Query 038400
Match_columns 504
No_of_seqs 339 out of 3144
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 18:25:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1.8E-25 6.3E-30 215.6 15.6 223 226-476 79-310 (328)
2 3rgz_A Protein brassinosteroid 99.9 5.4E-25 1.8E-29 236.7 16.8 322 176-504 343-768 (768)
3 3v47_A TOLL-like receptor 5B a 99.9 7.2E-23 2.4E-27 207.2 21.2 287 174-478 28-406 (455)
4 4eco_A Uncharacterized protein 99.9 4.9E-23 1.7E-27 216.5 20.3 293 175-478 248-598 (636)
5 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-23 5.2E-28 200.9 12.9 230 224-482 72-306 (313)
6 4fcg_A Uncharacterized protein 99.9 5.1E-23 1.7E-27 198.5 15.9 221 201-453 81-311 (328)
7 2id5_A Lingo-1, leucine rich r 99.9 4E-22 1.4E-26 202.9 22.9 286 173-478 29-331 (477)
8 4eco_A Uncharacterized protein 99.9 5.4E-23 1.8E-27 216.2 15.4 148 221-370 199-389 (636)
9 4ecn_A Leucine-rich repeat pro 99.9 4.9E-22 1.7E-26 213.0 21.5 292 175-478 490-817 (876)
10 4ecn_A Leucine-rich repeat pro 99.9 3.4E-22 1.2E-26 214.2 19.3 148 221-371 441-632 (876)
11 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-21 4.6E-26 201.3 20.6 82 392-479 398-480 (520)
12 3rgz_A Protein brassinosteroid 99.9 1.7E-22 6E-27 217.2 13.2 301 177-480 295-693 (768)
13 3o6n_A APL1; leucine-rich repe 99.9 9.4E-22 3.2E-26 194.8 16.9 265 176-478 45-350 (390)
14 4fmz_A Internalin; leucine ric 99.9 3.2E-21 1.1E-25 187.8 20.3 257 176-478 66-322 (347)
15 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.8E-21 2E-25 198.3 23.2 154 308-478 351-508 (562)
16 3t6q_A CD180 antigen; protein- 99.9 3.1E-21 1E-25 202.5 20.2 179 173-369 30-213 (606)
17 2id5_A Lingo-1, leucine rich r 99.9 1.3E-21 4.3E-26 199.2 16.7 259 175-454 55-331 (477)
18 3vq2_A TLR4, TOLL-like recepto 99.9 5.3E-21 1.8E-25 200.7 21.1 263 197-479 281-557 (606)
19 3o6n_A APL1; leucine-rich repe 99.9 2.3E-21 8E-26 191.9 17.3 257 199-478 43-329 (390)
20 4fmz_A Internalin; leucine ric 99.9 2E-20 6.8E-25 182.2 21.6 256 176-479 44-299 (347)
21 3oja_B Anopheles plasmodium-re 99.9 2.5E-21 8.6E-26 202.3 16.0 264 177-478 52-356 (597)
22 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-20 4.8E-25 204.4 22.4 285 174-478 22-373 (844)
23 3bz5_A Internalin-J, INLJ; leu 99.9 3.9E-20 1.3E-24 186.3 23.7 161 176-369 42-202 (457)
24 2ft3_A Biglycan; proteoglycan, 99.9 9.1E-21 3.1E-25 183.4 17.7 241 201-479 54-306 (332)
25 3oja_B Anopheles plasmodium-re 99.9 4.7E-21 1.6E-25 200.2 16.7 257 199-478 49-335 (597)
26 1ogq_A PGIP-2, polygalacturona 99.9 2.1E-21 7.2E-26 186.0 12.6 226 228-480 50-281 (313)
27 3v47_A TOLL-like receptor 5B a 99.9 1.1E-20 3.8E-25 191.0 17.8 258 201-478 30-382 (455)
28 1xku_A Decorin; proteoglycan, 99.8 3.6E-20 1.2E-24 179.0 20.4 243 201-480 52-306 (330)
29 3t6q_A CD180 antigen; protein- 99.8 1.9E-20 6.5E-25 196.4 19.9 286 177-478 255-558 (606)
30 2z66_A Variable lymphocyte rec 99.8 2.6E-20 8.8E-25 178.0 18.8 203 224-478 48-259 (306)
31 2z80_A TOLL-like receptor 2, v 99.8 4.1E-21 1.4E-25 187.5 12.6 249 201-478 52-312 (353)
32 3zyi_A Leucine-rich repeat-con 99.8 7.8E-20 2.7E-24 184.5 22.2 220 228-478 75-301 (452)
33 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-20 8E-25 180.5 17.2 267 174-478 52-331 (332)
34 1xku_A Decorin; proteoglycan, 99.8 9.5E-20 3.2E-24 176.0 21.0 237 202-478 32-274 (330)
35 2z7x_B TOLL-like receptor 1, v 99.8 3.7E-20 1.3E-24 190.5 18.5 280 175-478 20-410 (520)
36 3zyj_A Leucine-rich repeat-con 99.8 1.4E-19 4.7E-24 182.1 22.2 221 228-478 64-290 (440)
37 3vq2_A TLR4, TOLL-like recepto 99.8 4E-20 1.4E-24 193.9 18.9 283 177-478 205-532 (606)
38 2z66_A Variable lymphocyte rec 99.8 5.2E-20 1.8E-24 175.9 16.7 229 174-454 26-259 (306)
39 3o53_A Protein LRIM1, AGAP0063 99.8 2.1E-21 7.2E-26 186.5 6.3 249 195-483 28-278 (317)
40 2z81_A CD282 antigen, TOLL-lik 99.8 1.8E-20 6.3E-25 194.1 13.8 154 175-343 25-181 (549)
41 2z63_A TOLL-like receptor 4, v 99.8 5.5E-20 1.9E-24 191.5 17.0 83 176-262 76-160 (570)
42 2a5y_B CED-4; apoptosis; HET: 99.8 3.7E-21 1.3E-25 198.2 7.9 148 2-164 304-472 (549)
43 1ziw_A TOLL-like receptor 3; i 99.8 1.9E-19 6.5E-24 191.4 20.8 173 174-363 23-200 (680)
44 1o6v_A Internalin A; bacterial 99.8 3.4E-19 1.2E-23 180.5 21.2 265 177-478 69-342 (466)
45 1o6v_A Internalin A; bacterial 99.8 2.4E-19 8.2E-24 181.7 19.8 266 176-479 90-365 (466)
46 1ozn_A Reticulon 4 receptor; N 99.8 4.6E-19 1.6E-23 167.5 20.3 198 228-478 32-236 (285)
47 2z63_A TOLL-like receptor 4, v 99.8 2E-19 6.8E-24 187.2 17.5 179 285-478 345-529 (570)
48 2z80_A TOLL-like receptor 2, v 99.8 5.4E-20 1.9E-24 179.5 12.1 255 174-457 50-315 (353)
49 3zyj_A Leucine-rich repeat-con 99.8 7.2E-19 2.5E-23 176.8 20.1 221 201-454 64-290 (440)
50 3bz5_A Internalin-J, INLJ; leu 99.8 1.1E-18 3.6E-23 175.8 21.2 269 176-478 64-350 (457)
51 3oja_A Leucine-rich immune mol 99.8 9.5E-20 3.2E-24 185.1 13.6 236 200-475 33-270 (487)
52 3zyi_A Leucine-rich repeat-con 99.8 4.3E-19 1.5E-23 179.1 18.0 221 201-454 75-301 (452)
53 3o53_A Protein LRIM1, AGAP0063 99.8 2.6E-19 8.8E-24 171.9 15.5 238 203-480 12-250 (317)
54 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.3E-19 1.1E-23 185.1 17.2 127 175-322 51-181 (562)
55 2z81_A CD282 antigen, TOLL-lik 99.8 5.1E-18 1.7E-22 175.8 23.5 274 176-478 148-508 (549)
56 3j0a_A TOLL-like receptor 5; m 99.8 8.8E-19 3E-23 190.3 18.0 262 199-478 22-349 (844)
57 1ziw_A TOLL-like receptor 3; i 99.8 8.7E-19 3E-23 186.3 17.3 154 201-371 25-184 (680)
58 3g06_A SSPH2 (leucine-rich rep 99.8 6.4E-18 2.2E-22 175.3 21.4 198 226-479 99-296 (622)
59 1p9a_G Platelet glycoprotein I 99.8 7.1E-18 2.4E-22 159.4 19.8 198 224-478 6-206 (290)
60 1ozn_A Reticulon 4 receptor; N 99.8 5.5E-18 1.9E-22 160.1 17.7 156 200-370 31-189 (285)
61 1h6u_A Internalin H; cell adhe 99.8 2.6E-18 9E-23 164.0 15.4 196 199-461 39-234 (308)
62 1wwl_A Monocyte differentiatio 99.8 1.3E-18 4.4E-23 166.6 13.1 198 226-478 93-307 (312)
63 2o6q_A Variable lymphocyte rec 99.8 2.3E-17 8E-22 154.4 20.6 124 230-368 18-143 (270)
64 2xwt_C Thyrotropin receptor; s 99.8 6.6E-18 2.3E-22 155.1 15.5 199 228-480 31-239 (239)
65 1jl5_A Outer protein YOPM; leu 99.8 1.8E-17 6.3E-22 166.6 19.2 170 175-369 90-268 (454)
66 4g8a_A TOLL-like receptor 4; l 99.8 2.9E-17 9.8E-22 173.1 20.1 135 330-478 441-578 (635)
67 3oja_A Leucine-rich immune mol 99.7 1.3E-18 4.3E-23 176.8 8.4 238 175-454 33-273 (487)
68 2ast_B S-phase kinase-associat 99.7 2.5E-18 8.6E-23 166.5 7.4 259 201-493 47-318 (336)
69 1h6u_A Internalin H; cell adhe 99.7 4.4E-17 1.5E-21 155.5 15.6 190 226-478 39-228 (308)
70 3rfs_A Internalin B, repeat mo 99.7 6E-17 2E-21 151.7 16.2 204 199-468 39-247 (272)
71 2z62_A TOLL-like receptor 4, v 99.7 1E-16 3.5E-21 150.6 17.1 199 228-475 28-232 (276)
72 1p9a_G Platelet glycoprotein I 99.7 1E-16 3.4E-21 151.5 16.3 152 197-369 6-159 (290)
73 1wwl_A Monocyte differentiatio 99.7 2.5E-18 8.6E-23 164.5 5.2 198 199-454 93-307 (312)
74 1jl5_A Outer protein YOPM; leu 99.7 3.8E-17 1.3E-21 164.3 13.8 257 176-478 11-288 (454)
75 4glp_A Monocyte differentiatio 99.7 6.1E-17 2.1E-21 154.8 14.1 227 200-478 63-305 (310)
76 2z62_A TOLL-like receptor 4, v 99.7 6.9E-17 2.4E-21 151.7 13.8 199 201-454 28-235 (276)
77 4g8a_A TOLL-like receptor 4; l 99.7 3.1E-16 1.1E-20 165.2 19.2 132 173-321 49-184 (635)
78 2ca6_A RAN GTPase-activating p 99.7 3.3E-18 1.1E-22 169.0 3.7 247 193-455 24-315 (386)
79 3g06_A SSPH2 (leucine-rich rep 99.7 4.5E-16 1.5E-20 161.5 19.6 232 177-478 41-272 (622)
80 2xwt_C Thyrotropin receptor; s 99.7 1.4E-16 4.7E-21 146.3 13.3 198 201-455 31-238 (239)
81 2o6q_A Variable lymphocyte rec 99.7 8.2E-16 2.8E-20 143.8 18.6 194 202-454 17-216 (270)
82 4ay9_X Follicle-stimulating ho 99.7 9.8E-16 3.4E-20 148.9 18.0 220 228-476 30-255 (350)
83 3rfs_A Internalin B, repeat mo 99.7 3.5E-16 1.2E-20 146.5 14.1 190 226-477 39-232 (272)
84 4ay9_X Follicle-stimulating ho 99.7 2.2E-15 7.6E-20 146.4 18.5 219 201-452 30-255 (350)
85 1z7x_W Ribonuclease inhibitor; 99.6 1.7E-17 5.9E-22 167.9 0.4 288 177-478 29-381 (461)
86 1z7x_W Ribonuclease inhibitor; 99.6 4.6E-17 1.6E-21 164.8 3.4 285 175-478 2-324 (461)
87 3m19_A Variable lymphocyte rec 99.6 7.8E-15 2.7E-19 135.6 18.0 172 228-454 14-190 (251)
88 3cvr_A Invasion plasmid antige 99.6 2.9E-15 9.9E-20 153.5 16.3 186 228-464 59-251 (571)
89 1h6t_A Internalin B; cell adhe 99.6 2.1E-15 7.1E-20 142.5 13.8 122 227-368 45-166 (291)
90 4glp_A Monocyte differentiatio 99.6 4.8E-16 1.6E-20 148.5 9.1 219 177-454 65-305 (310)
91 3m19_A Variable lymphocyte rec 99.6 1.5E-14 5.1E-19 133.7 17.9 174 251-479 14-191 (251)
92 2ca6_A RAN GTPase-activating p 99.6 8.2E-17 2.8E-21 158.9 2.7 241 177-432 33-316 (386)
93 3ogk_B Coronatine-insensitive 99.6 1E-16 3.4E-21 167.6 2.7 298 177-478 165-524 (592)
94 2ast_B S-phase kinase-associat 99.6 1.2E-16 4E-21 154.7 2.9 226 226-477 45-282 (336)
95 4ezg_A Putative uncharacterize 99.6 2.7E-15 9.2E-20 133.2 11.4 127 226-368 42-169 (197)
96 1m9s_A Internalin B; cell inva 99.6 3.5E-15 1.2E-19 154.5 13.6 124 226-369 41-164 (605)
97 1h6t_A Internalin B; cell adhe 99.6 7.3E-15 2.5E-19 138.8 13.3 182 234-454 30-211 (291)
98 3ogk_B Coronatine-insensitive 99.6 3.6E-16 1.2E-20 163.3 3.4 283 177-478 139-474 (592)
99 4ezg_A Putative uncharacterize 99.6 1.6E-14 5.4E-19 128.2 13.3 152 284-478 41-192 (197)
100 3sfz_A APAF-1, apoptotic pepti 99.6 2.9E-15 9.8E-20 170.1 10.3 133 13-163 304-452 (1249)
101 1m9s_A Internalin B; cell inva 99.6 4.5E-15 1.5E-19 153.8 9.7 187 230-455 23-209 (605)
102 3goz_A Leucine-rich repeat-con 99.6 1.9E-15 6.5E-20 147.7 6.1 245 193-454 14-295 (362)
103 1dce_A Protein (RAB geranylger 99.6 3.5E-17 1.2E-21 168.6 -6.7 206 225-474 346-567 (567)
104 3cvr_A Invasion plasmid antige 99.5 2.1E-14 7.2E-19 147.1 12.3 188 201-442 59-253 (571)
105 2o6s_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 123.8 15.0 122 231-369 10-135 (208)
106 2o6s_A Variable lymphocyte rec 99.5 6.5E-14 2.2E-18 125.4 13.1 128 227-369 27-159 (208)
107 1xeu_A Internalin C; cellular 99.5 1.8E-14 6.1E-19 133.9 9.0 121 227-368 40-160 (263)
108 1vt4_I APAF-1 related killer D 99.5 8E-15 2.7E-19 154.6 6.2 112 26-156 323-436 (1221)
109 2p1m_B Transport inhibitor res 99.5 3.2E-15 1.1E-19 156.2 1.4 85 177-262 106-195 (594)
110 1xeu_A Internalin C; cellular 99.5 9.1E-14 3.1E-18 129.1 10.7 172 226-460 17-188 (263)
111 2p1m_B Transport inhibitor res 99.5 1.6E-15 5.6E-20 158.4 -1.7 300 177-479 157-518 (594)
112 3goz_A Leucine-rich repeat-con 99.5 2.3E-14 8E-19 139.9 6.5 238 175-430 21-295 (362)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 9.1E-13 3.1E-17 118.9 15.2 86 283-368 53-139 (220)
114 2ell_A Acidic leucine-rich nuc 99.5 1.1E-13 3.8E-18 119.3 8.0 131 226-372 22-161 (168)
115 2v9t_B SLIT homolog 2 protein 99.4 6E-13 2E-17 120.1 12.7 128 228-369 32-163 (220)
116 2xot_A Amphoterin-induced prot 99.4 3.8E-13 1.3E-17 131.1 12.0 83 285-368 62-146 (361)
117 3e6j_A Variable lymphocyte rec 99.4 9.7E-13 3.3E-17 119.5 13.0 127 228-369 40-170 (229)
118 2v70_A SLIT-2, SLIT homolog 2 99.4 8.2E-13 2.8E-17 119.2 12.3 129 228-369 32-164 (220)
119 2v9t_B SLIT homolog 2 protein 99.4 2.4E-12 8.2E-17 116.1 14.7 125 231-371 14-141 (220)
120 3e6j_A Variable lymphocyte rec 99.4 2.8E-12 9.5E-17 116.5 14.6 125 229-370 20-147 (229)
121 2je0_A Acidic leucine-rich nuc 99.4 2.4E-13 8.2E-18 114.7 6.0 125 226-366 15-148 (149)
122 1w8a_A SLIT protein; signaling 99.4 2.3E-12 8E-17 113.5 12.5 124 231-369 11-137 (192)
123 2ell_A Acidic leucine-rich nuc 99.4 2.6E-12 9E-17 110.6 12.1 105 249-368 22-130 (168)
124 1z6t_A APAF-1, apoptotic prote 99.4 7.1E-13 2.4E-17 138.2 10.1 129 14-160 305-449 (591)
125 2xot_A Amphoterin-induced prot 99.4 2.4E-12 8.3E-17 125.5 11.9 150 289-478 41-200 (361)
126 2wfh_A SLIT homolog 2 protein 99.4 6.6E-12 2.3E-16 110.6 13.5 123 231-369 13-137 (193)
127 4b8c_D Glucose-repressible alc 99.4 1.7E-13 5.7E-18 145.6 3.7 122 219-354 215-336 (727)
128 1a9n_A U2A', U2A'; complex (nu 99.3 7.1E-13 2.4E-17 115.2 6.3 130 224-370 15-152 (176)
129 4b8c_D Glucose-repressible alc 99.3 4.4E-13 1.5E-17 142.3 4.7 123 234-371 207-329 (727)
130 1dce_A Protein (RAB geranylger 99.3 6E-12 2E-16 129.6 11.4 101 252-369 442-544 (567)
131 2je0_A Acidic leucine-rich nuc 99.3 1.8E-12 6.3E-17 109.2 4.8 127 200-343 16-149 (149)
132 1a9n_A U2A', U2A'; complex (nu 99.2 1E-11 3.5E-16 107.8 7.3 130 197-345 15-151 (176)
133 2o6r_A Variable lymphocyte rec 99.2 1.9E-10 6.6E-15 99.8 13.2 123 230-369 9-135 (177)
134 1w8a_A SLIT protein; signaling 99.2 1.1E-10 3.7E-15 102.8 9.7 105 228-345 29-137 (192)
135 1ds9_A Outer arm dynein; leuci 99.1 8.8E-13 3E-17 117.0 -4.2 126 223-364 43-180 (198)
136 2wfh_A SLIT homolog 2 protein 99.1 2E-10 6.8E-15 101.1 10.6 104 228-345 31-137 (193)
137 3sb4_A Hypothetical leucine ri 99.0 2.5E-09 8.6E-14 102.6 14.8 130 200-340 24-154 (329)
138 1ds9_A Outer arm dynein; leuci 99.0 1E-11 3.5E-16 110.1 -2.2 123 230-369 25-151 (198)
139 3g39_A Variable lymphocyte rec 99.0 1.3E-09 4.6E-14 93.6 10.4 100 230-345 11-113 (170)
140 2r9u_A Variable lymphocyte rec 99.0 1.7E-09 6E-14 93.3 10.3 99 231-345 15-116 (174)
141 2o6r_A Variable lymphocyte rec 99.0 2.1E-09 7.3E-14 93.1 10.9 105 227-345 27-135 (177)
142 3g39_A Variable lymphocyte rec 98.9 8.4E-09 2.9E-13 88.6 10.3 101 252-369 10-113 (170)
143 4fdw_A Leucine rich hypothetic 98.9 1.2E-07 4E-12 93.2 19.4 244 195-476 130-379 (401)
144 2r9u_A Variable lymphocyte rec 98.8 1.5E-08 5E-13 87.4 10.3 101 253-370 14-117 (174)
145 3sb4_A Hypothetical leucine ri 98.7 3.7E-08 1.3E-12 94.4 11.1 76 393-474 250-328 (329)
146 4fdw_A Leucine rich hypothetic 98.6 1.9E-06 6.5E-11 84.6 18.5 220 195-453 152-380 (401)
147 3un9_A NLR family member X1; l 98.6 1.5E-08 5.3E-13 98.5 2.6 16 329-344 206-221 (372)
148 2ifg_A High affinity nerve gro 98.6 1.1E-07 3.8E-12 91.8 8.6 84 224-320 27-113 (347)
149 2ifg_A High affinity nerve gro 98.6 2E-07 6.8E-12 90.0 9.9 99 232-345 12-114 (347)
150 2ra8_A Uncharacterized protein 98.5 1.4E-08 4.7E-13 98.1 0.8 62 392-454 251-318 (362)
151 3un9_A NLR family member X1; l 98.5 6.8E-08 2.3E-12 93.9 4.7 159 177-345 73-250 (372)
152 2ra8_A Uncharacterized protein 98.5 1.8E-07 6.1E-12 90.3 7.4 62 279-342 164-227 (362)
153 4fs7_A Uncharacterized protein 98.1 0.0001 3.6E-09 72.1 16.7 217 222-476 156-375 (394)
154 1io0_A Tropomodulin; LRR prote 98.0 4.7E-06 1.6E-10 72.3 4.5 90 220-317 28-128 (185)
155 3e4g_A ATP synthase subunit S, 98.0 5.1E-06 1.7E-10 70.5 4.4 66 306-371 81-152 (176)
156 3e4g_A ATP synthase subunit S, 97.9 6.6E-06 2.2E-10 69.8 3.9 39 444-482 115-154 (176)
157 1io0_A Tropomodulin; LRR prote 97.9 9.7E-06 3.3E-10 70.3 4.8 121 193-321 28-162 (185)
158 4fs7_A Uncharacterized protein 97.9 0.00066 2.2E-08 66.4 18.1 192 245-475 156-351 (394)
159 4gt6_A Cell surface protein; l 97.8 0.0013 4.3E-08 64.3 18.8 80 392-478 287-368 (394)
160 3rw6_A Nuclear RNA export fact 97.7 9.2E-06 3.2E-10 74.3 1.3 19 282-300 191-209 (267)
161 3rw6_A Nuclear RNA export fact 97.6 1.7E-05 5.9E-10 72.4 2.7 66 221-300 163-233 (267)
162 4h09_A Hypothetical leucine ri 97.4 0.012 4.1E-07 56.9 19.5 78 392-475 262-341 (379)
163 4gt6_A Cell surface protein; l 97.3 0.011 3.8E-07 57.5 17.5 272 177-475 65-386 (394)
164 4h09_A Hypothetical leucine ri 96.8 0.1 3.4E-06 50.3 19.7 78 392-475 239-318 (379)
165 1pgv_A TMD-1, tropomodulin TMD 94.6 0.04 1.4E-06 47.4 5.2 39 282-320 93-136 (197)
166 3rfe_A Platelet glycoprotein I 93.5 0.14 4.7E-06 40.9 6.0 52 232-298 12-66 (130)
167 1pgv_A TMD-1, tropomodulin TMD 92.3 0.081 2.8E-06 45.5 3.3 97 193-297 33-136 (197)
168 3rfe_A Platelet glycoprotein I 89.3 0.28 9.6E-06 39.0 3.6 35 228-262 31-66 (130)
169 2qen_A Walker-type ATPase; unk 81.3 5.6 0.00019 37.1 9.0 105 17-134 226-333 (350)
170 2fna_A Conserved hypothetical 74.0 7.4 0.00025 36.3 7.5 116 20-155 233-355 (357)
171 1hqc_A RUVB; extended AAA-ATPa 62.3 2.5 8.4E-05 39.2 1.3 114 17-132 191-323 (324)
172 1w5s_A Origin recognition comp 61.2 8.3 0.00028 36.9 5.0 117 16-135 239-372 (412)
173 2vda_B Maltoporin; sugar trans 33.5 27 0.00091 18.1 1.8 18 25-42 7-24 (28)
174 2lz0_A Uncharacterized protein 22.1 76 0.0026 23.3 3.4 35 285-319 18-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.8e-25 Score=215.59 Aligned_cols=223 Identities=25% Similarity=0.384 Sum_probs=182.7
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
....+++|+++++.+..+|..++++++|++|++++|. +..+|..++++++|++|++++|.+...|..
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-------------l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~ 145 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-------------LMELPDTMQQFAGLETLTLARNPLRALPAS 145 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-------------CCCCCSCGGGGTTCSEEEEESCCCCCCCGG
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-------------ccchhHHHhccCCCCEEECCCCccccCcHH
Confidence 3577888888888888888888888888888888775 567777788888888888888887777777
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCC---------CCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccc
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQ---------LRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNIN 376 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~---------l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~ 376 (504)
++++++|++|++++|+....+|..++. +++|++|++++|. ++.+|..++.+++|++|++++|....+.
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~-- 222 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALG-- 222 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCC--
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCc--
Confidence 888888888888888888888776654 8888888888874 5588888888888888888887643321
Q ss_pred ccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccC
Q 038400 377 MEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKL 456 (504)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 456 (504)
......++|+.|+++++.....+|.++ ..+++|+.|++++|.....+|..+..+++|++|++++|+.+
T Consensus 223 ----------~~l~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 223 ----------PAIHHLPKLEELDLRGCTALRNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp ----------GGGGGCTTCCEEECTTCTTCCBCCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred ----------hhhccCCCCCEEECcCCcchhhhHHHh--cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 112234578888888887777888777 78899999999999999999999999999999999999999
Q ss_pred CcCccCCCCCCCcCeEeEeC
Q 038400 457 SSLSEDMHHVTTLKSLTIGG 476 (504)
Q Consensus 457 ~~l~~~~~~l~~L~~L~l~~ 476 (504)
+.+|..+.++++|+.+++..
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCG
T ss_pred hhccHHHhhccCceEEeCCH
Confidence 99999999999999998864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=5.4e-25 Score=236.69 Aligned_cols=322 Identities=16% Similarity=0.162 Sum_probs=206.8
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCC-CeeEEeeecCCcccchHHHHHHhcC--CCcccEEEeCCCCcc-ccCccccCCC
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLG-RVRTIVFSTDDEKISQSFVESCISK--SQFLRVLNLSESAIE-VCPRKIGNLK 251 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~-~lp~~~~~l~ 251 (504)
..++.+.+..+... ..++..+..+. +|++|+++++... ...+ ..+.. ++.|++|++++|.+. .+|..+++++
T Consensus 343 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~~L~~L~Ls~N~l~--~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 343 RGLKVLDLSFNEFS-GELPESLTNLSASLLTLDLSSNNFS--GPIL-PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp TTCCEEECCSSEEE-ECCCTTHHHHTTTCSEEECCSSEEE--EECC-TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred CCCCEEeCcCCccC-ccccHHHHhhhcCCcEEEccCCCcC--CCcC-hhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 34566666655442 12233344444 5666666544322 0000 11111 445555555555555 4555555555
Q ss_pred CcCeeeccCCCCccccCccee-----------ccccc-cCchhhhccccCCeeeecccccc-cccccCCCCCCccEEeee
Q 038400 252 HMRYLDLSGNSKIKKLPKSIY-----------CLELE-ELPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTIS 318 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~-----------~~~l~-~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~ 318 (504)
+|++|++++|...+.+|..+. .+.+. .+|..+..+++|++|++++|.+. ..+..+.++++|+.|+++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 555555555543334443332 11233 57888889999999999988876 456678999999999999
Q ss_pred CCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCC----------------
Q 038400 319 GCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGE---------------- 382 (504)
Q Consensus 319 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~---------------- 382 (504)
+|.....+|..++.+++|++|++++|...+.+|..++.+++|+.|++++|......+.......
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 9887778899999999999999999987778999999999999999998864311110000000
Q ss_pred -------------------------------------------CCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCC
Q 038400 383 -------------------------------------------GSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTD 419 (504)
Q Consensus 383 -------------------------------------------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 419 (504)
+..........+|+.|+++++.-...+|..+ +.++
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l--~~l~ 656 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI--GSMP 656 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG--GGCT
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH--hccc
Confidence 0000011122478999999976556788888 7889
Q ss_pred CccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCc--------------------
Q 038400 420 TLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPA-------------------- 479 (504)
Q Consensus 420 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~-------------------- 479 (504)
+|+.|+|++|.....+|..++.+++|++|++++|.....+|..+..+++|+.|++++|+-
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g 736 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCS
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcC
Confidence 999999999976668999999999999999999976668999999999999999987632
Q ss_pred --------hhhhcCCCCCCCCCCcccCCccccC
Q 038400 480 --------LSERCKRPTGEDWPKIAHIPQVNLD 504 (504)
Q Consensus 480 --------l~~~~~~~~~~~~~~i~~~~~~~~~ 504 (504)
+. .|....+.+|++++|+|.++.|
T Consensus 737 N~~Lcg~~l~-~C~~~~~~~~~~~~~~~~~~~~ 768 (768)
T 3rgz_A 737 NPGLCGYPLP-RCDPSNADGYAHHQRSHHHHHH 768 (768)
T ss_dssp CTEEESTTSC-CCCSCC----------------
T ss_pred CchhcCCCCc-CCCCCccCCCCCCCCccccCCC
Confidence 11 4777889999999999998754
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=7.2e-23 Score=207.18 Aligned_cols=287 Identities=14% Similarity=0.133 Sum_probs=195.9
Q ss_pred CCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCC
Q 038400 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKH 252 (504)
Q Consensus 174 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~ 252 (504)
.+..++++++..+.+. ...+..+.++++|++|+++++... ....+..+.++++|++|++++|.+..+ |..++++++
T Consensus 28 l~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccC-cCChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 4577899999888773 334667889999999999876542 122344578899999999999999865 778999999
Q ss_pred cCeeeccCCCCccccCcc--e-----------eccccccC-chh-hhccccCCeeeeccccccccc-ccCC---------
Q 038400 253 MRYLDLSGNSKIKKLPKS--I-----------YCLELEEL-PKD-IRHLTSLRAFALTTKQKSLQE-SGIR--------- 307 (504)
Q Consensus 253 L~~L~l~~~~~~~~lp~~--~-----------~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~-~~~~--------- 307 (504)
|++|++++|...+.+|.. + ..+.+..+ |.. +.++++|++|++++|.+.... ..+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 999999998533222221 1 12334444 433 667777777777766654332 1122
Q ss_pred -------------------------CCCCccEEeeeCCCCcccchhhcCC------------------------------
Q 038400 308 -------------------------SLGSLRCLTISGCGDLEHLFEEIDQ------------------------------ 332 (504)
Q Consensus 308 -------------------------~l~~L~~L~l~~~~~l~~~~~~~~~------------------------------ 332 (504)
.+++|++|++++|......|..+..
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 2356666666666443333322211
Q ss_pred ---------CCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccC
Q 038400 333 ---------LRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEI 403 (504)
Q Consensus 333 ---------l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 403 (504)
.++|++|++++|......|..++.+++|++|++++|...... .......++|+.|+++++
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-----------DNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECCSS
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-----------hhHhcCcccCCEEECCCC
Confidence 146677777776555556777888888888888887644321 112234458999999986
Q ss_pred CCcccc-hhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc-CCCCCCCcCeEeEeCCC
Q 038400 404 TQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE-DMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 404 ~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 478 (504)
. +..+ |..+ ..+++|+.|++++|......|..+..+++|++|++++| .++.+|. .+..+++|+.|++++|+
T Consensus 334 ~-l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 334 F-LGSIDSRMF--ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp C-CCEECGGGG--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred c-cCCcChhHh--cCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 4 4555 4555 67899999999998544444778999999999999997 5677765 45789999999998765
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=4.9e-23 Score=216.50 Aligned_cols=293 Identities=13% Similarity=0.129 Sum_probs=190.6
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCC-cccchHHHHHHhcCC------CcccEEEeCCCCccccCc--
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDD-EKISQSFVESCISKS------QFLRVLNLSESAIEVCPR-- 245 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~lp~-- 245 (504)
...++.+.+..+... ..++..+.++++|++|+++++. .. ....+..+.++ ++|++|++++|.++.+|.
T Consensus 248 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~l~--~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 248 LKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACNRGIS--GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp CTTCCEEEEECCTTC-SSCCTTTTTCSSCCEEECTTCTTSC--HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred cCCCCEEEecCCcCC-ccChHHHhcCCCCCEEECcCCCCCc--cccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 356889999988763 3567788899999999999775 33 21344445554 999999999999999999
Q ss_pred cccCCCCcCeeeccCCCCccccCccee-----------ccccccCchhhhcccc-CCeeeecccccccccccCCCCC--C
Q 038400 246 KIGNLKHMRYLDLSGNSKIKKLPKSIY-----------CLELEELPKDIRHLTS-LRAFALTTKQKSLQESGIRSLG--S 311 (504)
Q Consensus 246 ~~~~l~~L~~L~l~~~~~~~~lp~~~~-----------~~~l~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~~~l~--~ 311 (504)
.++++++|++|++++|...+.+| .+. .+.+..+|..+..+++ |++|++++|.+...|..+..++ +
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 99999999999999986554888 443 3456678888889998 9999999888777776666654 8
Q ss_pred ccEEeeeCCCCcccchhhcC-------CCCcccEEeeccCCCccccCccC-CCCCCccEEEeccCCCccccccccc----
Q 038400 312 LRCLTISGCGDLEHLFEEID-------QLRVLRTLSIVCCPRLISLPPAI-KYLSSLETLFLYKCESLDLNINMEM---- 379 (504)
Q Consensus 312 L~~L~l~~~~~l~~~~~~~~-------~l~~L~~L~l~~~~~l~~l~~~l-~~l~~L~~L~l~~~~~l~~~~~~~~---- 379 (504)
|+.|++++|......|..++ .+++|++|++++|. +..+|..+ ..+++|++|++++|....+......
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 88899888877666777777 67788888888875 55666543 3578888888888764432211000
Q ss_pred -------------cCC--CCCCCCCC--CCCccceEEEccCCCcccchhhhhcCCCCCccEEEecc------CCCCCccC
Q 038400 380 -------------EGE--GSNHDRKN--TRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIID------CPNFMALP 436 (504)
Q Consensus 380 -------------~~~--~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~ 436 (504)
... ........ ..++|+.|+++++ .+..+|..+ ..+++|+.|++++ +.....+|
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQP--LNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG--GGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred cccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhh--hcCCCCCEEECCCCcccccCcccccCh
Confidence 000 00000011 2234555555553 233344444 3455555555532 22233455
Q ss_pred cCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 437 RSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 437 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
..+..+++|++|++++|. ++.+|..+. ++|+.|++++|+
T Consensus 560 ~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp TTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCT
T ss_pred HHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCC
Confidence 555555555555555553 355555433 556666666554
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=1.5e-23 Score=200.94 Aligned_cols=230 Identities=14% Similarity=0.186 Sum_probs=121.9
Q ss_pred hcCCCcccEEEeCC-CCcc-ccCccccCCCCcCeeeccCCCCccccCcceeccccc-cCchhhhccccCCeeeecccccc
Q 038400 224 ISKSQFLRVLNLSE-SAIE-VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE-ELPKDIRHLTSLRAFALTTKQKS 300 (504)
Q Consensus 224 ~~~~~~L~~L~l~~-~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~ 300 (504)
+.++++|++|++++ +.+. .+|..++++++|++|++++|. +. .+|..+.++++|++|++++|.+.
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~l~~L~~L~Ls~N~l~ 138 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-------------VSGAIPDFLSQIKTLVTLDFSYNALS 138 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-------------CEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-------------eCCcCCHHHhCCCCCCEEeCCCCccC
Confidence 44444455555442 4433 344444445555555554443 22 33334444445555555444443
Q ss_pred -cccccCCCCCCccEEeeeCCCCcccchhhcCCCC-cccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccccc
Q 038400 301 -LQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLR-VLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINME 378 (504)
Q Consensus 301 -~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 378 (504)
..+..+.++++|++|++++|.....+|..++.++ +|++|++++|.....+|..+..++ |+.|++++|......
T Consensus 139 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~---- 213 (313)
T 1ogq_A 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA---- 213 (313)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC----
T ss_pred CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC----
Confidence 2333444445555555544433334444444444 455555544433334444444443 555555444321110
Q ss_pred ccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCc
Q 038400 379 MEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSS 458 (504)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 458 (504)
.......++|+.|+++++. +...+..+ ..+++|++|++++|.....+|..+..+++|++|++++|.....
T Consensus 214 -------~~~~~~l~~L~~L~L~~N~-l~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 214 -------SVLFGSDKNTQKIHLAKNS-LAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp -------GGGCCTTSCCSEEECCSSE-ECCBGGGC--CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred -------CHHHhcCCCCCEEECCCCc-eeeecCcc--cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 0111122244455554432 22222223 5678899999988865447888888999999999999865557
Q ss_pred CccCCCCCCCcCeEeEeCCCchhh
Q 038400 459 LSEDMHHVTTLKSLTIGGCPALSE 482 (504)
Q Consensus 459 l~~~~~~l~~L~~L~l~~c~~l~~ 482 (504)
+|.. ..+++|+.+++.+++.+..
T Consensus 284 ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CCCC-ccccccChHHhcCCCCccC
Confidence 7765 7888999999999886654
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=5.1e-23 Score=198.47 Aligned_cols=221 Identities=23% Similarity=0.311 Sum_probs=145.0
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP 280 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp 280 (504)
.+++.|+++++... . ++..+.++++|++|++++|.+..+|..++++++|++|++++|. +..+|
T Consensus 81 ~~l~~L~L~~n~l~---~-lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-------------l~~lp 143 (328)
T 4fcg_A 81 PGRVALELRSVPLP---Q-FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-------------LRALP 143 (328)
T ss_dssp TTCCEEEEESSCCS---S-CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-------------CCCCC
T ss_pred cceeEEEccCCCch---h-cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-------------cccCc
Confidence 45666666654433 1 1222445666677777766666666666666777777776664 44566
Q ss_pred hhhhccccCCeeeecccc-cccccccCC---------CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCcccc
Q 038400 281 KDIRHLTSLRAFALTTKQ-KSLQESGIR---------SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISL 350 (504)
Q Consensus 281 ~~i~~l~~L~~L~l~~~~-~~~~~~~~~---------~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l 350 (504)
..+.++++|++|++++|. ....|..+. ++++|++|++++|. +..+|..++.+++|++|++++|. +..+
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~-l~~l 221 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP-LSAL 221 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC-CCCC
T ss_pred HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC-CCcC
Confidence 666666677777766543 233333333 36677777777653 44666666777777777777664 4456
Q ss_pred CccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCC
Q 038400 351 PPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCP 430 (504)
Q Consensus 351 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 430 (504)
|..++.+++|++|++++|...... .......++|+.|++++|.....+|.++ ..+++|+.|++++|.
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~-----------p~~~~~l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNY-----------PPIFGGRAPLKRLILKDCSNLLTLPLDI--HRLTQLEKLDLRGCV 288 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBC-----------CCCTTCCCCCCEEECTTCTTCCBCCTTG--GGCTTCCEEECTTCT
T ss_pred chhhccCCCCCEEECcCCcchhhh-----------HHHhcCCCCCCEEECCCCCchhhcchhh--hcCCCCCEEeCCCCC
Confidence 666666777777777766544321 1222234467777777766777777777 678999999999999
Q ss_pred CCCccCcCCCCCCCcceEecccC
Q 038400 431 NFMALPRSLKDLEALETLFILGC 453 (504)
Q Consensus 431 ~l~~l~~~~~~l~~L~~L~l~~c 453 (504)
.+..+|.+++.+++|+.+.+...
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEECCGG
T ss_pred chhhccHHHhhccCceEEeCCHH
Confidence 99999999999999999998764
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=4e-22 Score=202.88 Aligned_cols=286 Identities=18% Similarity=0.182 Sum_probs=182.6
Q ss_pred CCCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCC
Q 038400 173 SIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLK 251 (504)
Q Consensus 173 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~ 251 (504)
..+..++.+++..+.+. ...+..+..+++|++|+++++... ...+..+.++++|++|+|++|.+..+|. .+.+++
T Consensus 29 ~~~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp CCCTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 34567889999888773 233567888999999999877654 2234457889999999999999998886 478999
Q ss_pred CcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchhh
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFEE 329 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~ 329 (504)
+|++|++++|. +..+ |..+..+++|++|++++|.+... +..+.++++|++|++++|......+..
T Consensus 105 ~L~~L~Ls~n~-------------i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 105 NLTKLDISENK-------------IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp TCCEEECTTSC-------------CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCCEEECCCCc-------------cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 99999999885 3332 34567788888888887776544 346778888888888886543333345
Q ss_pred cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccc----------cCCCCC-C--CCCCCCCccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEM----------EGEGSN-H--DRKNTRPHLR 396 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~----------~~~~~~-~--~~~~~~~~L~ 396 (504)
++.+++|+.|++.+|......+..+..+++|+.|++++|..+........ .+..-. . ......++|+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 77788888888887754444444677778888888887765432210000 000000 0 0011223555
Q ss_pred eEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc-CCCCCCCcCeEeEe
Q 038400 397 RVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE-DMHHVTTLKSLTIG 475 (504)
Q Consensus 397 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~ 475 (504)
.|+++++. +..++...+ ..+++|+.|++++|......|..+..+++|+.|++++| .++.++. .+..+++|+.|+++
T Consensus 252 ~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 252 FLNLSYNP-ISTIEGSML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp EEECCSSC-CCEECTTSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECC
T ss_pred eeECCCCc-CCccChhhc-cccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEcc
Confidence 55555532 333332211 34566666666665333333556677777777777776 4555554 35667778888777
Q ss_pred CCC
Q 038400 476 GCP 478 (504)
Q Consensus 476 ~c~ 478 (504)
+||
T Consensus 329 ~N~ 331 (477)
T 2id5_A 329 SNP 331 (477)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=5.4e-23 Score=216.21 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=107.4
Q ss_pred HHHhcCCCcccEEEeCCCCccc------------------cCcccc--CCCCcCeeeccCCCCccccCccee--------
Q 038400 221 ESCISKSQFLRVLNLSESAIEV------------------CPRKIG--NLKHMRYLDLSGNSKIKKLPKSIY-------- 272 (504)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~-------- 272 (504)
+..+.++++|++|++++|.++. +|..++ ++++|++|++++|...+.+|..+.
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 3457778888888888888886 888888 888888888888877777776553
Q ss_pred ---ccc-cc--cCchhhhcc------ccCCeeeecccccccccc--cCCCCCCccEEeeeCCCCcccchhhcCCCCcccE
Q 038400 273 ---CLE-LE--ELPKDIRHL------TSLRAFALTTKQKSLQES--GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRT 338 (504)
Q Consensus 273 ---~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 338 (504)
.+. +. .+|..++++ ++|++|++++|.+...|. .++++++|++|++++|.....+| .++.+++|++
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 222 44 377777776 788888888877776666 67888888888888765544666 6777777777
Q ss_pred EeeccCCCccccCccCCCCCC-ccEEEeccCCC
Q 038400 339 LSIVCCPRLISLPPAIKYLSS-LETLFLYKCES 370 (504)
Q Consensus 339 L~l~~~~~l~~l~~~l~~l~~-L~~L~l~~~~~ 370 (504)
|++++|. +..+|..+..+++ |++|++++|..
T Consensus 358 L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 358 LNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp EECCSSE-EEECCTTSEEECTTCCEEECCSSCC
T ss_pred EECCCCc-cccccHhhhhhcccCcEEEccCCcC
Confidence 7777764 4466666666666 77777776653
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=4.9e-22 Score=212.99 Aligned_cols=292 Identities=13% Similarity=0.134 Sum_probs=167.3
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCC-cccchHHHHHHh-------cCCCcccEEEeCCCCccccCc-
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDD-EKISQSFVESCI-------SKSQFLRVLNLSESAIEVCPR- 245 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~lp~- 245 (504)
...++.+.+..+... ..++..+.++++|+.|.++++. .. ....+..+ ..+++|++|++++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~-~~iP~~l~~L~~L~~L~Ls~N~~ls--g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACNRGIS--AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTC-CSCCGGGGGCSSCCEEECTTCTTSC--HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred CCCCCEEECcCCCCC-ccChHHHhCCCCCCEEECcCCCCcc--cccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 356889999988763 4557788999999999999775 33 21233333 345599999999999999999
Q ss_pred -cccCCCCcCeeeccCCCCccccCccee-----------ccccccCchhhhcccc-CCeeeecccccccccccCCCCCC-
Q 038400 246 -KIGNLKHMRYLDLSGNSKIKKLPKSIY-----------CLELEELPKDIRHLTS-LRAFALTTKQKSLQESGIRSLGS- 311 (504)
Q Consensus 246 -~~~~l~~L~~L~l~~~~~~~~lp~~~~-----------~~~l~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~~~l~~- 311 (504)
.++++++|++|++++|. +..+| .+. .+.+..+|..+..+++ |++|++++|.+...|..+..++.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 89999999999999985 44777 332 3445577777777777 88888877776665555555443
Q ss_pred -ccEEeeeCCCCcccch---hhcC--CCCcccEEeeccCCCccccCccCC-CCCCccEEEeccCCCccccccccccCCCC
Q 038400 312 -LRCLTISGCGDLEHLF---EEID--QLRVLRTLSIVCCPRLISLPPAIK-YLSSLETLFLYKCESLDLNINMEMEGEGS 384 (504)
Q Consensus 312 -L~~L~l~~~~~l~~~~---~~~~--~l~~L~~L~l~~~~~l~~l~~~l~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 384 (504)
|+.|++++|.....+| ..++ .+++|+.|++++|. +..+|..+. .+++|+.|++++|..-.++.... ...
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~-~~~-- 720 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSL-KPK-- 720 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSS-SCT--
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHh-ccc--
Confidence 7777776654433222 1222 22356666666653 345554432 55666666666654322110000 000
Q ss_pred CCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEeccc------CccCCc
Q 038400 385 NHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILG------CPKLSS 458 (504)
Q Consensus 385 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~------c~~l~~ 458 (504)
.......++|+.|+++++ .+..+|..+....+++|+.|+|++| .++.+|..+..+++|+.|++++ |.....
T Consensus 721 -~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 721 -DGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp -TSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred -cccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCccccccccc
Confidence 000000114555555553 3444554441124455555555554 2333454455555555555543 222334
Q ss_pred CccCCCCCCCcCeEeEeCCC
Q 038400 459 LSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 459 l~~~~~~l~~L~~L~l~~c~ 478 (504)
+|..+.++++|+.|++++|.
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSC
T ss_pred ChHHHhcCCCCCEEECCCCC
Confidence 44444445555555555443
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=3.4e-22 Score=214.20 Aligned_cols=148 Identities=16% Similarity=0.237 Sum_probs=120.5
Q ss_pred HHHhcCCCcccEEEeCCCCccc------------------cCcccc--CCCCcCeeeccCCCCccccCccee--------
Q 038400 221 ESCISKSQFLRVLNLSESAIEV------------------CPRKIG--NLKHMRYLDLSGNSKIKKLPKSIY-------- 272 (504)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~-------- 272 (504)
+..+.++++|++|+|++|.++. +|..++ ++++|++|++++|...+.+|..+.
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 4457888999999999999987 899888 999999999999987888887654
Q ss_pred ---ccc-cc--cCchhhhccc-------cCCeeeecccccccccc--cCCCCCCccEEeeeCCCCcccchhhcCCCCccc
Q 038400 273 ---CLE-LE--ELPKDIRHLT-------SLRAFALTTKQKSLQES--GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLR 337 (504)
Q Consensus 273 ---~~~-l~--~lp~~i~~l~-------~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 337 (504)
.+. +. .+|..+++++ +|++|++++|.+...|. .++++++|+.|++++|.. ..+| .++.+++|+
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-AFGTNVKLT 598 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-CCCTTSEES
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc-ccch-hhcCCCcce
Confidence 222 44 3788787776 89999999888877776 788999999999988754 4777 888889999
Q ss_pred EEeeccCCCccccCccCCCCCC-ccEEEeccCCCc
Q 038400 338 TLSIVCCPRLISLPPAIKYLSS-LETLFLYKCESL 371 (504)
Q Consensus 338 ~L~l~~~~~l~~l~~~l~~l~~-L~~L~l~~~~~l 371 (504)
.|++++|. +..+|..+..+++ |+.|++++|..-
T Consensus 599 ~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 599 DLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp EEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred EEECcCCc-cccchHHHhhccccCCEEECcCCCCC
Confidence 99998876 4588888888888 888888888643
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.3e-21 Score=201.29 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=64.0
Q ss_pred CCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccC-CCCCCCcC
Q 038400 392 RPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSED-MHHVTTLK 470 (504)
Q Consensus 392 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~ 470 (504)
.++|+.|+++++.-...+|..+ .++|+.|++++| .++.+|..+..+++|++|++++| .++.+|.. +..+++|+
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l----~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCL----PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSC----CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CccCCEEECcCCCCCcchhhhh----cccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCccc
Confidence 3578888888865434444433 268999999888 56788888889999999999998 67788876 78889999
Q ss_pred eEeEeCCCc
Q 038400 471 SLTIGGCPA 479 (504)
Q Consensus 471 ~L~l~~c~~ 479 (504)
.|++++|+-
T Consensus 472 ~L~l~~N~~ 480 (520)
T 2z7x_B 472 KIWLHTNPW 480 (520)
T ss_dssp EEECCSSCB
T ss_pred EEECcCCCC
Confidence 999998873
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1.7e-22 Score=217.16 Aligned_cols=301 Identities=14% Similarity=0.109 Sum_probs=180.9
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc-ccCccccCCC-CcC
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNLK-HMR 254 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~l~-~L~ 254 (504)
.++.+.+..+.+ ....+..+..+++|++|.++++... .......+.++++|++|++++|.+. .+|..+.++. +|+
T Consensus 295 ~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~--~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 295 TLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFS--GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TCSEEECCSSEE-EECCCGGGGGCTTCCEEECCSSEEE--EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred cCCEEECcCCcC-CCccchHHhcCCCccEEECCCCccc--CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 344555544433 1223445556666666666654421 1223334666777777777777666 5666666665 666
Q ss_pred eeeccCCCCccccCccee-------------ccccc-cCchhhhccccCCeeeecccccc-cccccCCCCCCccEEeeeC
Q 038400 255 YLDLSGNSKIKKLPKSIY-------------CLELE-ELPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTISG 319 (504)
Q Consensus 255 ~L~l~~~~~~~~lp~~~~-------------~~~l~-~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~ 319 (504)
+|++++|...+.+|..+. .+.+. .+|..+.++++|++|++++|.+. ..+..++++++|+.|++++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 666666544333443321 11111 45666777777777777776654 3445566677777777776
Q ss_pred CCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccc----------cccCCC---CCC
Q 038400 320 CGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINM----------EMEGEG---SNH 386 (504)
Q Consensus 320 ~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~----------~~~~~~---~~~ 386 (504)
|.....+|..++.+++|++|++++|.....+|..++.+++|+.|++++|......+.. ...... ...
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 6655566666666666666666666555556666666666666666666533211100 000000 001
Q ss_pred CCCCCCCccceEEEccCCCcccchhhhhc---------------------------------------------------
Q 038400 387 DRKNTRPHLRRVVIGEITQLLELPQWLLQ--------------------------------------------------- 415 (504)
Q Consensus 387 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--------------------------------------------------- 415 (504)
......++|+.|+++++.-...+|.++..
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 11122347888888876443344433211
Q ss_pred -----------------CCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 416 -----------------GSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 416 -----------------~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..++++++|+.|++++|.
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 124678889998886666889899999999999999987667899999999999999999986
Q ss_pred ch
Q 038400 479 AL 480 (504)
Q Consensus 479 ~l 480 (504)
--
T Consensus 692 l~ 693 (768)
T 3rgz_A 692 LD 693 (768)
T ss_dssp CE
T ss_pred cc
Confidence 43
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=9.4e-22 Score=194.78 Aligned_cols=265 Identities=17% Similarity=0.197 Sum_probs=150.9
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcC
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMR 254 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~ 254 (504)
..++.+++..+.+. .-....+..+++|++|.++++... ...+..+..+++|++|++++|.+..+| ..++.+++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCccc---ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 45677888776552 122344677888888888876644 222335778888899999888888665 4578888899
Q ss_pred eeeccCCCCccccCcceeccccccCchhh-hccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCcccchhhcCC
Q 038400 255 YLDLSGNSKIKKLPKSIYCLELEELPKDI-RHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDLEHLFEEIDQ 332 (504)
Q Consensus 255 ~L~l~~~~~~~~lp~~~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 332 (504)
+|++++|. +..+|..+ .++++|++|++++|.+...+ ..+.++++|++|++++|.. ..++ ++.
T Consensus 121 ~L~L~~n~-------------l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~--~~~ 184 (390)
T 3o6n_A 121 VLVLERND-------------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSL 184 (390)
T ss_dssp EEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCC--GGG
T ss_pred EEECCCCc-------------cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Cccc--ccc
Confidence 99988875 55555553 66777777777776655443 3466777777777776542 2221 223
Q ss_pred CCcccEEeeccCC------------------CccccC--------------------ccCCCCCCccEEEeccCCCcccc
Q 038400 333 LRVLRTLSIVCCP------------------RLISLP--------------------PAIKYLSSLETLFLYKCESLDLN 374 (504)
Q Consensus 333 l~~L~~L~l~~~~------------------~l~~l~--------------------~~l~~l~~L~~L~l~~~~~l~~~ 374 (504)
+++|+.|++++|. .+..+| ..+..+++|++|++++|......
T Consensus 185 l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp CTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE
T ss_pred ccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC
Confidence 3333333333321 112222 12333444444444444322110
Q ss_pred ccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCc
Q 038400 375 INMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
.......++|+.|+++++ .+..+|... ..+++|+.|++++| .++.+|..+..+++|++|++++|.
T Consensus 265 -----------~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 265 -----------YHPFVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp -----------SGGGTTCSSCCEEECCSS-CCCEEECSS--SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred -----------hhHccccccCCEEECCCC-cCcccCccc--CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc
Confidence 111122335666666653 344444443 45566666666665 345555555566666666666653
Q ss_pred cCCcCccCCCCCCCcCeEeEeCCC
Q 038400 455 KLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 455 ~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
++.++ +..+++|+.|++++|+
T Consensus 330 -i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 330 -IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -CCCCC--CCTTCCCSEEECCSSC
T ss_pred -cceeC--chhhccCCEEEcCCCC
Confidence 44443 4566677777776665
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=3.2e-21 Score=187.84 Aligned_cols=257 Identities=19% Similarity=0.252 Sum_probs=143.2
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
..++.+.+.++.+.. ++. +..+++|++|.++++..... ..+..+++|++|++++|.+..+|. +..+++|++
T Consensus 66 ~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDI-----SALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred CCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCc-----hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 456777777665532 222 66777777777776654421 136677778888887777776665 777777777
Q ss_pred eeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCc
Q 038400 256 LDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRV 335 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~ 335 (504)
|++++|.....+ ..+..+++|++|++++|.....+. +..+++|++|++++|. +..++. +..+++
T Consensus 137 L~l~~n~~~~~~-------------~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~ 200 (347)
T 4fmz_A 137 LNLGANHNLSDL-------------SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTS 200 (347)
T ss_dssp EECTTCTTCCCC-------------GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTT
T ss_pred EECCCCCCcccc-------------cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCc
Confidence 777777533322 225566666666666665544433 5566666666666653 333333 555666
Q ss_pred ccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhc
Q 038400 336 LRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQ 415 (504)
Q Consensus 336 L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 415 (504)
|+.|++++|. +..++. +..+++|++|++++|...... .....++|+.|+++++ .+..++ .+
T Consensus 201 L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l~~~~-------------~~~~l~~L~~L~l~~n-~l~~~~-~~-- 261 (347)
T 4fmz_A 201 LHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITDLS-------------PLANLSQLTWLEIGTN-QISDIN-AV-- 261 (347)
T ss_dssp CCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG-------------GGTTCTTCCEEECCSS-CCCCCG-GG--
T ss_pred cceeecccCC-CCCCch-hhcCCcCCEEEccCCccCCCc-------------chhcCCCCCEEECCCC-ccCCCh-hH--
Confidence 6666666653 333333 455566666666665432211 0122335566666554 333332 22
Q ss_pred CCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 416 GSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 416 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
..+++|+.|++++| .++.++ .+..+++|+.|++++|......|..+..+++|+.|++++|+
T Consensus 262 ~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 262 KDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred hcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 34556666666555 344443 24555566666666654333334444555666666666554
No 15
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=5.8e-21 Score=198.34 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=93.6
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccc---cCccCCCCCCccEEEeccCCCccccccccccCCCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLIS---LPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGS 384 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 384 (504)
.+++|++|++++|.....+|..++.+++|++|++++|. ++. +|..++.+++|+.|++++|......
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~---------- 419 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHA---------- 419 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCC----------
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCcc----------
Confidence 33444444444443333334444444444444444442 222 2233444445555555444322100
Q ss_pred CCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccC-C
Q 038400 385 NHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSED-M 463 (504)
Q Consensus 385 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~ 463 (504)
........++|+.|+++++.-...+|..+ .++|+.|++++| .++.+|..+..+++|++|++++| .++.+|.. +
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~ 493 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCL----PPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVF 493 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSC----CTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTST
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhh----cCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHH
Confidence 01112233588888888865333333322 168999999988 67889988889999999999998 67788887 8
Q ss_pred CCCCCcCeEeEeCCC
Q 038400 464 HHVTTLKSLTIGGCP 478 (504)
Q Consensus 464 ~~l~~L~~L~l~~c~ 478 (504)
..+++|+.|++++||
T Consensus 494 ~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 494 DRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCTTCCCEECCSCC
T ss_pred hcCCCCCEEEecCCC
Confidence 899999999999887
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=3.1e-21 Score=202.46 Aligned_cols=179 Identities=12% Similarity=0.086 Sum_probs=133.8
Q ss_pred CCCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCC
Q 038400 173 SIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLK 251 (504)
Q Consensus 173 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~ 251 (504)
..+..++++++..+.+. ...+..+.++++|++|+++++... ...+..|.++++|++|++++|.+..+ |..+++++
T Consensus 30 ~l~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY---WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TSCTTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCCcCcEEEccCCccC-cCChhHhccCccceEEECCCCccc---eeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 35668899999888773 334567889999999999977654 23345688999999999999999855 67899999
Q ss_pred CcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchhh
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFEE 329 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~ 329 (504)
+|++|++++|. +..+ |..++++++|++|++++|.+... .+.+..+++|++|++++|......+..
T Consensus 106 ~L~~L~L~~n~-------------i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 106 ALKHLFFIQTG-------------ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp TCCEEECTTSC-------------CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred cccEeeccccC-------------cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 99999999885 4554 44577888999999998887663 345566899999999887655555677
Q ss_pred cCCCCccc--EEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 330 IDQLRVLR--TLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 330 ~~~l~~L~--~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
++.+++|+ .|++++|. +..+++......+|+.|++++|.
T Consensus 173 ~~~l~~L~~l~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp HHTTTTCCSEEEECTTCC-CCEECTTTTTTCEEEEEECTTCS
T ss_pred hhhhcccceeEEecCCCc-cCccChhHhhhccccccccCCch
Confidence 88888888 78888875 34343333344566777666654
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=199.20 Aligned_cols=259 Identities=19% Similarity=0.200 Sum_probs=182.1
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCc
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHM 253 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L 253 (504)
...++.+.+..+.+. ...+..+.++++|++|+++++... ......+.++++|++|++++|.+..+ |..+..+++|
T Consensus 55 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 55 FPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK---LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCC---SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCC---ccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 346777777776552 233556777888888888766544 22233466778888888888887754 4567788888
Q ss_pred CeeeccCCCCcccc-Cccee-----------ccccccCch-hhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeC
Q 038400 254 RYLDLSGNSKIKKL-PKSIY-----------CLELEELPK-DIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISG 319 (504)
Q Consensus 254 ~~L~l~~~~~~~~l-p~~~~-----------~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~ 319 (504)
++|++++|. +..+ |..+. .+.+..+|. .+..+++|+.|++++|.+...+ ..+..+++|+.|++++
T Consensus 131 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 131 KSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 888888774 3322 22221 234555554 4677888888888877765543 3678888888888888
Q ss_pred CCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceE
Q 038400 320 CGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRV 398 (504)
Q Consensus 320 ~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 398 (504)
|..+..+|.......+|++|++++|. ++.+| ..+..+++|+.|++++|...... .......++|+.|
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L 277 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIE-----------GSMLHELLRLQEI 277 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEEC-----------TTSCTTCTTCCEE
T ss_pred CccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccC-----------hhhccccccCCEE
Confidence 88888887777777788888888874 55666 35778889999999888643322 1223345589999
Q ss_pred EEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCccCc-CCCCCCCcceEecccCc
Q 038400 399 VIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMALPR-SLKDLEALETLFILGCP 454 (504)
Q Consensus 399 ~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 454 (504)
+++++. +..+ |..+ ..+++|+.|++++| .++.++. .+..+++|+.|++++|+
T Consensus 278 ~L~~n~-l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 278 QLVGGQ-LAVVEPYAF--RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECCSSC-CSEECTTTB--TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ECCCCc-cceECHHHh--cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 999864 4444 4555 67899999999998 5666665 56889999999999885
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=5.3e-21 Score=200.67 Aligned_cols=263 Identities=15% Similarity=0.062 Sum_probs=201.7
Q ss_pred hcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcc------
Q 038400 197 LSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKS------ 270 (504)
Q Consensus 197 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~------ 270 (504)
+..+++|+.|.+.++...... .+..+++|++|++++|.+..+| .+ .+++|++|++++|..+..++..
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-----~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 353 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-----DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLS 353 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-----CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCC
T ss_pred cccCCCCCEEEecCccchhhh-----hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCC
Confidence 677788888888876654211 4667788888888888888777 44 7888888888887555443211
Q ss_pred ---eeccccccC---chhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeecc
Q 038400 271 ---IYCLELEEL---PKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVC 343 (504)
Q Consensus 271 ---~~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~ 343 (504)
+..+.+..+ |..+..+++|++|++++|.....+..+..+++|+.|++++|......| ..++.+++|++|++++
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 012233333 778889999999999999888777889999999999999976555555 5788999999999999
Q ss_pred CCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccE
Q 038400 344 CPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQN 423 (504)
Q Consensus 344 ~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 423 (504)
|......|..++.+++|++|++++|...... ........++|+.|+++++.-....|.++ ..+++|+.
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~ 501 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT----------LSNVFANTTNLTFLDLSKCQLEQISWGVF--DTLHRLQL 501 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGE----------ECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCE
T ss_pred CCCCccchhhhcCCCCCCEEECCCCcCCCcc----------hHHhhccCCCCCEEECCCCcCCccChhhh--cccccCCE
Confidence 9866677888999999999999998643211 02223344689999999975444445556 67899999
Q ss_pred EEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCC-CcCeEeEeCCCc
Q 038400 424 LLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVT-TLKSLTIGGCPA 479 (504)
Q Consensus 424 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~c~~ 479 (504)
|++++|......|..+..+++|++|++++| .++.+|..+..++ +|+.|++++||-
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 999999655555888999999999999998 5889998888887 699999998763
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=2.3e-21 Score=191.93 Aligned_cols=257 Identities=15% Similarity=0.136 Sum_probs=163.4
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE 277 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~ 277 (504)
.+.+++.+.+.++... .+....+..+++|++|++++|.+..++ ..+..+++|++|++++|. +.
T Consensus 43 ~l~~l~~l~l~~~~l~---~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------l~ 106 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-------------IR 106 (390)
T ss_dssp GGCCCSEEEEESCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------CC
T ss_pred ccCCceEEEecCCchh---hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-------------CC
Confidence 4688999999977654 333455778999999999999999776 489999999999999986 55
Q ss_pred cCc-hhhhccccCCeeeeccccccccccc-CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCC
Q 038400 278 ELP-KDIRHLTSLRAFALTTKQKSLQESG-IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIK 355 (504)
Q Consensus 278 ~lp-~~i~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~ 355 (504)
.+| ..+.++++|++|++++|.+...+.. +.++++|++|++++|......+..++.+++|++|++++|. ++.++ ++
T Consensus 107 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~ 183 (390)
T 3o6n_A 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LS 183 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GG
T ss_pred cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc--cc
Confidence 554 4478999999999999998877765 5899999999999986555556679999999999999985 44443 34
Q ss_pred CCCCccEEEeccCCCcccccc-----ccccCCCCC----------------------CCCCCCCCccceEEEccCCCccc
Q 038400 356 YLSSLETLFLYKCESLDLNIN-----MEMEGEGSN----------------------HDRKNTRPHLRRVVIGEITQLLE 408 (504)
Q Consensus 356 ~l~~L~~L~l~~~~~l~~~~~-----~~~~~~~~~----------------------~~~~~~~~~L~~L~l~~~~~l~~ 408 (504)
.+++|+.|++++|..-..... ....+.... .......++|+.|+++++.--..
T Consensus 184 ~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE
T ss_pred cccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc
Confidence 566666666666532211100 000000000 00011122444555544321111
Q ss_pred chhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 409 LPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 409 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
.|..+ ..+++|+.|++++| .++.+|..+..+++|++|++++| .++.+|..+..+++|+.|++++|+
T Consensus 264 ~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 264 MYHPF--VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp ESGGG--TTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred ChhHc--cccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc
Confidence 23333 34455555555554 34444444455555555555555 344555545555556666665554
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2e-20 Score=182.17 Aligned_cols=256 Identities=19% Similarity=0.261 Sum_probs=199.8
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
..++.+.+.++.+.. + ..+..+++|++|+++++....... +..+++|++|++++|.++.+| .+..+++|++
T Consensus 44 ~~L~~L~l~~~~i~~--~-~~~~~~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS--I-QGIEYLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp TTCSEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred ccccEEEEeCCcccc--c-hhhhhcCCccEEEccCCccccchh-----hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 356778887766532 2 336778999999998776542221 788999999999999988875 5889999999
Q ss_pred eeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCc
Q 038400 256 LDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRV 335 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~ 335 (504)
|++++|. +..+|. +..+++|++|++++|......+.+..+++|++|++++|. +..++. ++.+++
T Consensus 115 L~l~~n~-------------i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~ 178 (347)
T 4fmz_A 115 LYLNEDN-------------ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTD 178 (347)
T ss_dssp EECTTSC-------------CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTT
T ss_pred EECcCCc-------------ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCC
Confidence 9999886 566665 788999999999988655555668999999999999975 444443 889999
Q ss_pred ccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhc
Q 038400 336 LRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQ 415 (504)
Q Consensus 336 L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 415 (504)
|++|++++|. +..++. +..+++|+.|++++|...... .....++|+.|+++++ .+..++. +
T Consensus 179 L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~~L~~L~l~~n-~l~~~~~-~-- 239 (347)
T 4fmz_A 179 LYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDIT-------------PVANMTRLNSLKIGNN-KITDLSP-L-- 239 (347)
T ss_dssp CSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG-------------GGGGCTTCCEEECCSS-CCCCCGG-G--
T ss_pred CCEEEccCCc-cccccc-ccCCCccceeecccCCCCCCc-------------hhhcCCcCCEEEccCC-ccCCCcc-h--
Confidence 9999999985 566665 778899999999988543321 1233458999999996 4666665 4
Q ss_pred CCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCc
Q 038400 416 GSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPA 479 (504)
Q Consensus 416 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 479 (504)
..+++|+.|++++| .++.++ .+..+++|++|++++| .++.++ .+..+++|+.|++++|+.
T Consensus 240 ~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 240 ANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred hcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcC
Confidence 67899999999998 466664 5889999999999998 677775 477899999999999964
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.5e-21 Score=202.27 Aligned_cols=264 Identities=17% Similarity=0.192 Sum_probs=143.9
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCCCcCe
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLKHMRY 255 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~ 255 (504)
.++.+.+.++.+. ......+..+++|++|+++++... ...+..+..+++|++|+|++|.+..+|. .++++++|++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCC---CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4455666555441 122334566777777777766543 2223346677777888887777776554 4577777888
Q ss_pred eeccCCCCccccCcceeccccccCchh-hhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchhhcCCC
Q 038400 256 LDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFEEIDQL 333 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l 333 (504)
|++++|. +..+|.. ++++++|++|++++|.+...++ .++++++|++|++++|.. ..++ ++.+
T Consensus 128 L~L~~n~-------------l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l 191 (597)
T 3oja_B 128 LVLERND-------------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLI 191 (597)
T ss_dssp EECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGC
T ss_pred EEeeCCC-------------CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhh
Confidence 8877764 4445444 3566666666666665544432 466666666666666432 2221 2223
Q ss_pred CcccEEeeccCC------------------Ccccc--------------------CccCCCCCCccEEEeccCCCccccc
Q 038400 334 RVLRTLSIVCCP------------------RLISL--------------------PPAIKYLSSLETLFLYKCESLDLNI 375 (504)
Q Consensus 334 ~~L~~L~l~~~~------------------~l~~l--------------------~~~l~~l~~L~~L~l~~~~~l~~~~ 375 (504)
++|+.|++++|. .+..+ +..++.+++|+.|++++|......
T Consensus 192 ~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~- 270 (597)
T 3oja_B 192 PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM- 270 (597)
T ss_dssp TTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE-
T ss_pred hhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCC-
Confidence 333333333221 01111 123444445555555544322211
Q ss_pred cccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCcc
Q 038400 376 NMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPK 455 (504)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 455 (504)
.......++|+.|+++++ .+..+|... ..+++|+.|+|++| .+..+|..+..+++|+.|++++|.
T Consensus 271 ----------~~~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~- 335 (597)
T 3oja_B 271 ----------YHPFVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS- 335 (597)
T ss_dssp ----------SGGGTTCSSCCEEECTTS-CCCEEECSS--SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-
T ss_pred ----------HHHhcCccCCCEEECCCC-CCCCCCccc--ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-
Confidence 111122346666666663 445555444 45666777777666 345566666666777777777663
Q ss_pred CCcCccCCCCCCCcCeEeEeCCC
Q 038400 456 LSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 456 l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
+..+| +..+++|+.|++++|+
T Consensus 336 l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 336 IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCcC--hhhcCCCCEEEeeCCC
Confidence 44443 4566777777777766
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=204.39 Aligned_cols=285 Identities=15% Similarity=0.108 Sum_probs=190.9
Q ss_pred CCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCC
Q 038400 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKH 252 (504)
Q Consensus 174 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~ 252 (504)
.+..++.+.+..+.+. ...+..+.++++|++|+++++.. ...+.+..+.++++|++|+|++|.+..+ |..++++++
T Consensus 22 lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 5678999999998773 33456788999999999997642 2223345688999999999999999865 789999999
Q ss_pred cCeeeccCCCCccccCcceecccccc-Cchh--hhccccCCeeeeccccccccc--ccCCCCCCccEEeeeCCCCcccch
Q 038400 253 MRYLDLSGNSKIKKLPKSIYCLELEE-LPKD--IRHLTSLRAFALTTKQKSLQE--SGIRSLGSLRCLTISGCGDLEHLF 327 (504)
Q Consensus 253 L~~L~l~~~~~~~~lp~~~~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~ 327 (504)
|++|++++|. +.. +|.. +.++++|++|++++|.+...+ ..++++++|++|++++|......+
T Consensus 99 L~~L~Ls~n~-------------l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 99 LFELRLYFCG-------------LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CCCEECTTCC-------------CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cCEeeCcCCC-------------CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 9999999986 332 3333 778899999999988876543 468899999999999876655566
Q ss_pred hhcCCC--CcccEEeeccCCCccccCccCCCCCC------ccEEEeccCCCccccccc-------------ccc------
Q 038400 328 EEIDQL--RVLRTLSIVCCPRLISLPPAIKYLSS------LETLFLYKCESLDLNINM-------------EME------ 380 (504)
Q Consensus 328 ~~~~~l--~~L~~L~l~~~~~l~~l~~~l~~l~~------L~~L~l~~~~~l~~~~~~-------------~~~------ 380 (504)
..++.+ ++|+.|++++|......|..++.+++ |+.|++++|......... ...
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 667666 78888888887665556665555554 888888877321100000 000
Q ss_pred --------CCCC------------------------CCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEec
Q 038400 381 --------GEGS------------------------NHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLII 427 (504)
Q Consensus 381 --------~~~~------------------------~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~ 427 (504)
.... ........++|+.|+++++. +..+ |..+ ..+++|+.|+++
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~--~~l~~L~~L~Ls 322 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAF--YGLDNLQVLNLS 322 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTT--TTCSSCCEEEEE
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHHh--cCCCCCCEEECC
Confidence 0000 00111122356666666542 3332 3333 456777777777
Q ss_pred cCCCCCccCcCCCCCCCcceEecccCccCCcCcc-CCCCCCCcCeEeEeCCC
Q 038400 428 DCPNFMALPRSLKDLEALETLFILGCPKLSSLSE-DMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 428 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 478 (504)
+|..-...|..+..+++|+.|++++| .+..++. .+.++++|+.|++++|.
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence 76433333566777777777777776 4455443 46677788888887764
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=3.9e-20 Score=186.28 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=111.3
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
..++.+++..+.+.. ++ .+..+++|++|+++++..... .+..+++|++|++++|.++.+| ++++++|++
T Consensus 42 ~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~------~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL------DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE------ccccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 356778887776632 23 567888899998887765422 1678888999999998888775 788888999
Q ss_pred eeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCc
Q 038400 256 LDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRV 335 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~ 335 (504)
|++++|. +..+| ++.+++|++|++++|.+... .++.+++|++|++++|..+..+ .++.+++
T Consensus 111 L~L~~N~-------------l~~l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 111 LNCDTNK-------------LTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp EECCSSC-------------CSCCC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred EECCCCc-------------CCeec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 9998875 44444 56677777777777766554 2666777777777776555554 3566677
Q ss_pred ccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 336 LRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 336 L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
|++|++++|. ++.+| ++.+++|+.|++++|.
T Consensus 172 L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 172 LTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp CCEEECCSSC-CCCCC--CTTCTTCCEEECCSSC
T ss_pred CCEEECCCCc-cceec--cccCCCCCEEECcCCc
Confidence 7777777663 44454 5666666666666654
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=9.1e-21 Score=183.36 Aligned_cols=241 Identities=17% Similarity=0.240 Sum_probs=148.2
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+++++|+++++... ...+..+.++++|++|++++|.++.+ |..++++++|++|++++|. +..+
T Consensus 54 ~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~l 117 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-------------LVEI 117 (332)
T ss_dssp TTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-------------CCSC
T ss_pred CCCeEEECCCCcCC---ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-------------CCcc
Confidence 56777777766543 22233466777888888888877755 5677778888888887764 4444
Q ss_pred chhhhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCc--ccchhhcCCCCcccEEeeccCCCccccCccCCC
Q 038400 280 PKDIRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDL--EHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 280 p~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~ 356 (504)
|..+. ++|++|++++|.+...++ .+.++++|++|++++|... ...+..++.+ +|++|++++|. ++.+|..+.
T Consensus 118 ~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~- 192 (332)
T 2ft3_A 118 PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP- 192 (332)
T ss_dssp CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC-
T ss_pred Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc-
Confidence 44443 677777777776655543 3667777777777775432 2345555556 77777777764 555665443
Q ss_pred CCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchh-hhhcCCCCCccEEEeccCCCCCcc
Q 038400 357 LSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQ-WLLQGSTDTLQNLLIIDCPNFMAL 435 (504)
Q Consensus 357 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l 435 (504)
++|++|++++|...... .......++|+.|+++++ .+..++. ++ ..+++|+.|++++| .++.+
T Consensus 193 -~~L~~L~l~~n~i~~~~-----------~~~l~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~l 256 (332)
T 2ft3_A 193 -ETLNELHLDHNKIQAIE-----------LEDLLRYSKLYRLGLGHN-QIRMIENGSL--SFLPTLRELHLDNN-KLSRV 256 (332)
T ss_dssp -SSCSCCBCCSSCCCCCC-----------TTSSTTCTTCSCCBCCSS-CCCCCCTTGG--GGCTTCCEEECCSS-CCCBC
T ss_pred -CCCCEEECCCCcCCccC-----------HHHhcCCCCCCEEECCCC-cCCcCChhHh--hCCCCCCEEECCCC-cCeec
Confidence 56777777776433221 112223346777777764 3444433 34 45677777777776 45677
Q ss_pred CcCCCCCCCcceEecccCccCCcCccC-CCC------CCCcCeEeEeCCCc
Q 038400 436 PRSLKDLEALETLFILGCPKLSSLSED-MHH------VTTLKSLTIGGCPA 479 (504)
Q Consensus 436 ~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~------l~~L~~L~l~~c~~ 479 (504)
|..+..+++|+.|++++| .++.++.. +.. .++|+.|++.+||.
T Consensus 257 p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcc
Confidence 777777777777777776 35555432 221 35677777777764
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=4.7e-21 Score=200.25 Aligned_cols=257 Identities=15% Similarity=0.132 Sum_probs=168.5
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE 277 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~ 277 (504)
.+.+++.+.+.++... .+++..+.++++|++|++++|.+..+| ..++.+++|++|++++|. +.
T Consensus 49 ~l~~l~~l~l~~~~l~---~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~ 112 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-------------IR 112 (597)
T ss_dssp GGCCCSEEEESSCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------CC
T ss_pred cCCCceEEEeeCCCCC---CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-------------CC
Confidence 4578899999876544 334556778999999999999999766 489999999999999986 55
Q ss_pred cCch-hhhccccCCeeeeccccccccccc-CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCC
Q 038400 278 ELPK-DIRHLTSLRAFALTTKQKSLQESG-IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIK 355 (504)
Q Consensus 278 ~lp~-~i~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~ 355 (504)
.+|. .++.+++|++|++++|.+...++. ++++++|++|++++|......|..++.+++|++|++++|. +..++ ++
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~ 189 (597)
T 3oja_B 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LS 189 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GG
T ss_pred CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hh
Confidence 5554 468999999999999998877765 5899999999999987666666789999999999999985 55444 34
Q ss_pred CCCCccEEEeccCCCcccccc-----ccccCCCC----------------------CCCCCCCCCccceEEEccCCCccc
Q 038400 356 YLSSLETLFLYKCESLDLNIN-----MEMEGEGS----------------------NHDRKNTRPHLRRVVIGEITQLLE 408 (504)
Q Consensus 356 ~l~~L~~L~l~~~~~l~~~~~-----~~~~~~~~----------------------~~~~~~~~~~L~~L~l~~~~~l~~ 408 (504)
.+++|+.|++++|..-..... ....+... ........++|+.|+++++.-...
T Consensus 190 ~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE
T ss_pred hhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC
Confidence 566666666666532211100 00000000 000011122455555555432222
Q ss_pred chhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 409 LPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 409 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
.|..+ ..+++|+.|+|++| .++.+|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|+
T Consensus 270 ~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 270 MYHPF--VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp ESGGG--TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CHHHh--cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC
Confidence 23344 45566666666654 34455555555666666666665 344566555556666666666664
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=2.1e-21 Score=185.99 Aligned_cols=226 Identities=16% Similarity=0.127 Sum_probs=184.3
Q ss_pred CcccEEEeCCCCcc---ccCccccCCCCcCeeeccC-CCCccccCcceeccccccCchhhhccccCCeeeecccccc-cc
Q 038400 228 QFLRVLNLSESAIE---VCPRKIGNLKHMRYLDLSG-NSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKS-LQ 302 (504)
Q Consensus 228 ~~L~~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~-~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~-~~ 302 (504)
.+++.|+++++.+. .+|..++++++|++|++++ |. + ...+|..+.++++|++|++++|.+. ..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-l-----------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-L-----------VGPIPPAIAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-E-----------ESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-c-----------cccCChhHhcCCCCCEEECcCCeeCCcC
Confidence 57899999999987 5899999999999999995 54 1 2357788999999999999999887 66
Q ss_pred cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCC-CccEEEeccCCCccccccccccC
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLS-SLETLFLYKCESLDLNINMEMEG 381 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~-~L~~L~l~~~~~l~~~~~~~~~~ 381 (504)
+..+.++++|++|++++|.....+|..++.+++|++|++++|.....+|..++.++ +|+.|++++|......
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~------- 190 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI------- 190 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC-------
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC-------
Confidence 77799999999999999876668899999999999999999976558999999998 9999999998643211
Q ss_pred CCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc
Q 038400 382 EGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE 461 (504)
Q Consensus 382 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 461 (504)
........|+.|+++++.-....|..+ ..+++|+.|++++|.....+| .+..+++|++|++++|.....+|.
T Consensus 191 -----~~~~~~l~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 191 -----PPTFANLNLAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp -----CGGGGGCCCSEEECCSSEEEECCGGGC--CTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCG
T ss_pred -----ChHHhCCcccEEECcCCcccCcCCHHH--hcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCCh
Confidence 111111249999999875444556666 788999999999985433444 488899999999999965558899
Q ss_pred CCCCCCCcCeEeEeCCCch
Q 038400 462 DMHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 462 ~~~~l~~L~~L~l~~c~~l 480 (504)
.+..+++|+.|++++|+--
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp GGGGCTTCCEEECCSSEEE
T ss_pred HHhcCcCCCEEECcCCccc
Confidence 9999999999999999643
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1.1e-20 Score=191.04 Aligned_cols=258 Identities=15% Similarity=0.095 Sum_probs=160.8
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc-cc-CccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE-VC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
+++++|+++++... ...+..+.++++|++|++++|.+. .+ |..+..+++|++|++++|. +..
T Consensus 30 ~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-------------l~~ 93 (455)
T 3v47_A 30 AHVNYVDLSLNSIA---ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-------------FLQ 93 (455)
T ss_dssp TTCCEEECCSSCCC---EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-------------TCE
T ss_pred CccCEEEecCCccC---cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-------------cCc
Confidence 78999999987654 233456889999999999999986 44 5679999999999999986 333
Q ss_pred C-chhhhccccCCeeeeccccccc-ccc--cCCCCCCccEEeeeCCCCcccchhh-cCCCCcccEEeeccCCCccccCcc
Q 038400 279 L-PKDIRHLTSLRAFALTTKQKSL-QES--GIRSLGSLRCLTISGCGDLEHLFEE-IDQLRVLRTLSIVCCPRLISLPPA 353 (504)
Q Consensus 279 l-p~~i~~l~~L~~L~l~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~ 353 (504)
+ |..+.++++|++|++++|.+.. .+. .+.++++|++|++++|......|.. ++.+++|++|++++|......+..
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 3 5567777888888888777653 222 2777888888888876654444544 677788888888777533333333
Q ss_pred CC----------------------------------CCCCccEEEeccCCCcccccc-------------cccc------
Q 038400 354 IK----------------------------------YLSSLETLFLYKCESLDLNIN-------------MEME------ 380 (504)
Q Consensus 354 l~----------------------------------~l~~L~~L~l~~~~~l~~~~~-------------~~~~------ 380 (504)
+. .+++|++|++++|........ ....
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 32 335677777777743211000 0000
Q ss_pred ------------------------------CCC--C-CCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEe
Q 038400 381 ------------------------------GEG--S-NHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLI 426 (504)
Q Consensus 381 ------------------------------~~~--~-~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l 426 (504)
... . ........++|+.|+++++. +..+ |..+ ..+++|+.|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L 330 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAF--WGLTHLLKLNL 330 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT--TTCTTCCEEEC
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHh--cCcccCCEEEC
Confidence 000 0 00111122356666666543 3332 3344 45667777777
Q ss_pred ccCCCCCcc-CcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 427 IDCPNFMAL-PRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 427 ~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
++|. ++.+ |..+..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 331 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 331 SQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp CSSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCc-cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 7663 3333 4556777777777777764333335667777777777777764
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=3.6e-20 Score=179.01 Aligned_cols=243 Identities=14% Similarity=0.206 Sum_probs=170.5
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+.++.|+++++... ...+..+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..+
T Consensus 52 ~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~l 115 (330)
T 1xku_A 52 PDTALLDLQNNKIT---EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-------------LKEL 115 (330)
T ss_dssp TTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-------------CSBC
T ss_pred CCCeEEECCCCcCC---EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-------------CCcc
Confidence 57888888876654 22233477888899999998888866 7788888999999998875 4445
Q ss_pred chhhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCc--ccchhhcCCCCcccEEeeccCCCccccCccCCC
Q 038400 280 PKDIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDL--EHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 280 p~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~ 356 (504)
|..+. ++|++|++++|.+...+ ..+.++++|+.|++++|... ...+..++.+++|++|++++|. ++.+|..+.
T Consensus 116 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~- 191 (330)
T 1xku_A 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP- 191 (330)
T ss_dssp CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC-
T ss_pred Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc-
Confidence 54443 67888888887766544 34778888888888886542 2455677788888888888874 666776553
Q ss_pred CCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchh-hhhcCCCCCccEEEeccCCCCCcc
Q 038400 357 LSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQ-WLLQGSTDTLQNLLIIDCPNFMAL 435 (504)
Q Consensus 357 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l 435 (504)
++|++|++++|..-... .......++|+.|+++++. +..++. ++ ..+++|+.|++++| .++.+
T Consensus 192 -~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~N-~l~~l 255 (330)
T 1xku_A 192 -PSLTELHLDGNKITKVD-----------AASLKGLNNLAKLGLSFNS-ISAVDNGSL--ANTPHLRELHLNNN-KLVKV 255 (330)
T ss_dssp -TTCSEEECTTSCCCEEC-----------TGGGTTCTTCCEEECCSSC-CCEECTTTG--GGSTTCCEEECCSS-CCSSC
T ss_pred -ccCCEEECCCCcCCccC-----------HHHhcCCCCCCEEECCCCc-CceeChhhc--cCCCCCCEEECCCC-cCccC
Confidence 78888888887543321 1112234578888888753 444433 44 46788999999887 56788
Q ss_pred CcCCCCCCCcceEecccCccCCcCccC-CC------CCCCcCeEeEeCCCch
Q 038400 436 PRSLKDLEALETLFILGCPKLSSLSED-MH------HVTTLKSLTIGGCPAL 480 (504)
Q Consensus 436 ~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~------~l~~L~~L~l~~c~~l 480 (504)
|.++..+++|++|++++| .++.++.. +. ..++|+.|++.++|.-
T Consensus 256 p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccc
Confidence 888888899999999887 46666542 21 2477888888888743
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=1.9e-20 Score=196.40 Aligned_cols=286 Identities=14% Similarity=0.094 Sum_probs=119.6
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCe
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRY 255 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~ 255 (504)
.++.+.+..+.+. ......+..+++|+.|+++++.... .+..+..+++|++|++++|.+..+ |..+..+++|++
T Consensus 255 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~----lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSE----LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCSC----CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred ceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccCC----CChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 3444554444331 1122334555556666555444321 112244555566666665555543 345555555555
Q ss_pred eeccCCCCccccCcc-ee-----------ccccccC---chhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeC
Q 038400 256 LDLSGNSKIKKLPKS-IY-----------CLELEEL---PKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISG 319 (504)
Q Consensus 256 L~l~~~~~~~~lp~~-~~-----------~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~ 319 (504)
|++++|.....+|.. +. .+.+..+ |..+..+++|++|++++|.+... +..+..+++|++|++++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 555555432233221 00 1111111 22333444444444444332222 22334444444444444
Q ss_pred CCCcccchh-hcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceE
Q 038400 320 CGDLEHLFE-EIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRV 398 (504)
Q Consensus 320 ~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 398 (504)
|......+. .++.+++|+.|++++|......|..++.+++|++|++++|....... .........++|+.|
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI--------QKTNSLQTLGRLEIL 481 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE--------CSSCGGGGCTTCCEE
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc--------ccchhhccCCCccEE
Confidence 332222221 13444444444444443322333334444444444444443211000 000111122355555
Q ss_pred EEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 399 VIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 399 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
+++++.-....|..+ ..+++|+.|++++|......|..+..+++| .|++++|......|..+..+++|+.|++++||
T Consensus 482 ~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAF--TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ECCCCccCccChhhh--ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 555542222223333 445555555555554333344455555555 55555553332233334455566666666554
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=2.6e-20 Score=178.03 Aligned_cols=203 Identities=23% Similarity=0.220 Sum_probs=106.2
Q ss_pred hcCCCcccEEEeCCCCcccc---CccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVC---PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKS 300 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 300 (504)
+.++++|++|++++|.+... |..+..+++|++|++++|. +..+|..+..+++|++|++++|.+.
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-------------i~~l~~~~~~l~~L~~L~l~~n~l~ 114 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-------------VITMSSNFLGLEQLEHLDFQHSNLK 114 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-------------EEEEEEEEETCTTCCEEECTTSEEE
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-------------cccChhhcCCCCCCCEEECCCCccc
Confidence 44455555555555544422 3334444555555555443 3333334444555555555544443
Q ss_pred ccc--ccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCcc-ccCccCCCCCCccEEEeccCCCccccccc
Q 038400 301 LQE--SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLI-SLPPAIKYLSSLETLFLYKCESLDLNINM 377 (504)
Q Consensus 301 ~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~~~~~ 377 (504)
..+ ..+..+++|++|++++|......+..++.+++|++|++++|.... .+|..+..+++|++|++++|.
T Consensus 115 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-------- 186 (306)
T 2z66_A 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-------- 186 (306)
T ss_dssp SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC--------
T ss_pred ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC--------
Confidence 332 234445555555555544333333444445555555555443222 244444445555555554442
Q ss_pred cccCCCCCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCcc
Q 038400 378 EMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPK 455 (504)
Q Consensus 378 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~ 455 (504)
+..+ |.++ ..+++|+.|++++|. ++.++ ..+..+++|+.|++++|..
T Consensus 187 ----------------------------l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 187 ----------------------------LEQLSPTAF--NSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ----------------------------CCEECTTTT--TTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ----------------------------cCCcCHHHh--cCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCC
Confidence 2333 3344 456778888887774 44443 3567778888888888755
Q ss_pred CCcCccCCCCCC-CcCeEeEeCCC
Q 038400 456 LSSLSEDMHHVT-TLKSLTIGGCP 478 (504)
Q Consensus 456 l~~l~~~~~~l~-~L~~L~l~~c~ 478 (504)
....|..+..++ +|+.|++++|+
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cccCHHHHHhhhccCCEEEccCCC
Confidence 555566666664 78888887765
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=187.47 Aligned_cols=249 Identities=16% Similarity=0.197 Sum_probs=179.9
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
++|++|+++++... ......+.++++|++|++++|.++.++ ..+.++++|++|++++|. +..+
T Consensus 52 ~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~ 115 (353)
T 2z80_A 52 EAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-------------LSNL 115 (353)
T ss_dssp TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------CSSC
T ss_pred ccCcEEECCCCcCc---ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-------------CCcC
Confidence 47888888877654 222335778899999999999888664 568889999999999875 6667
Q ss_pred chh-hhccccCCeeeecccccccccc--cCCCCCCccEEeeeCCCCcccc-hhhcCCCCcccEEeeccCCCccccCccCC
Q 038400 280 PKD-IRHLTSLRAFALTTKQKSLQES--GIRSLGSLRCLTISGCGDLEHL-FEEIDQLRVLRTLSIVCCPRLISLPPAIK 355 (504)
Q Consensus 280 p~~-i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~l~ 355 (504)
|.. +.++++|++|++++|.+...+. .+.++++|++|++++|..+..+ +..++.+++|++|++++|......|..++
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 665 7788999999999888776655 6788999999999988656655 45788889999999998875555578888
Q ss_pred CCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhh-h-hcCCCCCccEEEeccCCC--
Q 038400 356 YLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQW-L-LQGSTDTLQNLLIIDCPN-- 431 (504)
Q Consensus 356 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~-~~~~~~~L~~L~l~~~~~-- 431 (504)
.+++|++|++++|..-..... .....++|+.|+++++. +..++.. + .....+.++.+++.++..
T Consensus 196 ~l~~L~~L~l~~n~l~~~~~~-----------~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 196 SIQNVSHLILHMKQHILLLEI-----------FVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TCSEEEEEEEECSCSTTHHHH-----------HHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred ccccCCeecCCCCccccchhh-----------hhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccC
Confidence 889999999988864222100 00113478888888753 3332211 1 112356677788777642
Q ss_pred --CCccCcCCCCCCCcceEecccCccCCcCccCC-CCCCCcCeEeEeCCC
Q 038400 432 --FMALPRSLKDLEALETLFILGCPKLSSLSEDM-HHVTTLKSLTIGGCP 478 (504)
Q Consensus 432 --l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~ 478 (504)
+..+|..+..+++|++|++++| .++.+|..+ ..+++|++|++++|+
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 1235667788899999999988 577888774 788999999998886
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=7.8e-20 Score=184.51 Aligned_cols=220 Identities=22% Similarity=0.249 Sum_probs=131.2
Q ss_pred CcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccccccCc-hhhhccccCCeeeeccccccccccc
Q 038400 228 QFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP-KDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
+++++|+|++|.+..+ |..+.++++|++|++++|. +..++ ..+..+++|++|++++|.+...++.
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-------------IRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-------------CCEECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-------------cCCcChhhccCcccCCEEECCCCcCCccChh
Confidence 4556666666666543 3455666666666666553 33322 3345566666666666555444332
Q ss_pred -CCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCCCccccccccccCC
Q 038400 306 -IRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCESLDLNINMEMEGE 382 (504)
Q Consensus 306 -~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 382 (504)
+..+++|++|++++|.. ..++ ..+..+++|++|++++|..++.++. .+..+++|++|++++|..-..
T Consensus 142 ~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--------- 211 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--------- 211 (452)
T ss_dssp TSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---------
T ss_pred hhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---------
Confidence 55566666666666442 2333 3455666666666666555555544 355566666666666542211
Q ss_pred CCCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc
Q 038400 383 GSNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE 461 (504)
Q Consensus 383 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 461 (504)
......++|+.|+++++. +..+ |..+ ..+++|+.|++++|......+..+..+++|+.|++++| .++.+|.
T Consensus 212 ----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 283 (452)
T 3zyi_A 212 ----PNLTPLVGLEELEMSGNH-FPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH 283 (452)
T ss_dssp ----CCCTTCTTCCEEECTTSC-CSEECGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred ----ccccccccccEEECcCCc-CcccCcccc--cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccCh
Confidence 112223356666666643 3333 4455 67788999999887544444667888899999999888 5666664
Q ss_pred -CCCCCCCcCeEeEeCCC
Q 038400 462 -DMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 462 -~~~~l~~L~~L~l~~c~ 478 (504)
.+..+++|+.|++++||
T Consensus 284 ~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSSTTCTTCCEEECCSSC
T ss_pred HHhccccCCCEEEccCCC
Confidence 45678889999998876
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=2.3e-20 Score=180.47 Aligned_cols=267 Identities=15% Similarity=0.161 Sum_probs=198.6
Q ss_pred CCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCc
Q 038400 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHM 253 (504)
Q Consensus 174 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L 253 (504)
.+..++.+.+..+.+. ...+..+.++++|++|.++++... ...+..+.++++|++|++++|.+..+|..+. ++|
T Consensus 52 ~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp CCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCC---EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccC---ccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 3457888998888763 233456888999999999877654 2234567889999999999999999888776 799
Q ss_pred CeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeecccccc---cccccCCCCCCccEEeeeCCCCcccchhh
Q 038400 254 RYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKS---LQESGIRSLGSLRCLTISGCGDLEHLFEE 329 (504)
Q Consensus 254 ~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 329 (504)
++|++++|. +..+|.. +..+++|++|++++|.+. ..+..+..+ +|+.|++++|. +..+|..
T Consensus 126 ~~L~l~~n~-------------i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~ 190 (332)
T 2ft3_A 126 VELRIHDNR-------------IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKD 190 (332)
T ss_dssp CEEECCSSC-------------CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSS
T ss_pred CEEECCCCc-------------cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcc
Confidence 999999885 5566543 778999999999988875 345566777 99999999864 5567765
Q ss_pred cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL 409 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 409 (504)
+. ++|++|++++|......+..+..+++|++|++++|..-... .......++|+.|+++++ .+..+
T Consensus 191 ~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~l 256 (332)
T 2ft3_A 191 LP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-----------NGSLSFLPTLRELHLDNN-KLSRV 256 (332)
T ss_dssp SC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-----------TTGGGGCTTCCEEECCSS-CCCBC
T ss_pred cc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-----------hhHhhCCCCCCEEECCCC-cCeec
Confidence 54 78999999998644444577889999999999998643321 111223458999999986 67788
Q ss_pred hhhhhcCCCCCccEEEeccCCCCCccCc-CCCC------CCCcceEecccCccC--CcCccCCCCCCCcCeEeEeCCC
Q 038400 410 PQWLLQGSTDTLQNLLIIDCPNFMALPR-SLKD------LEALETLFILGCPKL--SSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 410 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~------l~~L~~L~l~~c~~l--~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
|.++ ..+++|+.|+++++. ++.++. .+.. .++|+.|++.+++.. ...|..+..+++|+.+++++|.
T Consensus 257 p~~l--~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PAGL--PDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTG--GGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred Chhh--hcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8877 678999999999874 565543 2322 477999999998754 3456668889999999998875
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=9.5e-20 Score=176.05 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=187.2
Q ss_pred CeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccC-
Q 038400 202 RVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL- 279 (504)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l- 279 (504)
+++++.+++...... +. .-.+.|++|++++|.++.++. .++++++|++|++++|. +..+
T Consensus 32 ~l~~l~~~~~~l~~l----p~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~ 92 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV----PK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-------------ISKIS 92 (330)
T ss_dssp ETTEEECTTSCCCSC----CC--SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-------------CCCBC
T ss_pred CCeEEEecCCCcccc----Cc--cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-------------CCeeC
Confidence 567777765543311 11 123689999999999998775 79999999999999886 5555
Q ss_pred chhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCcc--ccCccCCCC
Q 038400 280 PKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLI--SLPPAIKYL 357 (504)
Q Consensus 280 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~l~~l 357 (504)
|..+..+++|++|++++|.+...+..+. ++|++|++++|......+..++.+++|+.|++++|.... ..+..+..+
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred HHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence 6778899999999999998887766554 799999999976555555678999999999999986432 556778899
Q ss_pred CCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCcc-
Q 038400 358 SSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMAL- 435 (504)
Q Consensus 358 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l- 435 (504)
++|++|++++|..-.+. . ...++|+.|+++++. +..+ +..+ ..+++|+.|++++|. ++.+
T Consensus 171 ~~L~~L~l~~n~l~~l~-------------~-~~~~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~Ls~n~-l~~~~ 232 (330)
T 1xku_A 171 KKLSYIRIADTNITTIP-------------Q-GLPPSLTELHLDGNK-ITKVDAASL--KGLNNLAKLGLSFNS-ISAVD 232 (330)
T ss_dssp TTCCEEECCSSCCCSCC-------------S-SCCTTCSEEECTTSC-CCEECTGGG--TTCTTCCEEECCSSC-CCEEC
T ss_pred CCcCEEECCCCccccCC-------------c-cccccCCEEECCCCc-CCccCHHHh--cCCCCCCEEECCCCc-CceeC
Confidence 99999999998644321 1 112689999999964 5544 4556 678999999999985 5544
Q ss_pred CcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 436 PRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 436 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
+..+..+++|++|++++| .++.+|..+..+++|++|++++|+
T Consensus 233 ~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred hhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 457889999999999998 688999999999999999999986
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=190.55 Aligned_cols=280 Identities=15% Similarity=0.099 Sum_probs=165.7
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcC
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMR 254 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~ 254 (504)
+..++++++..+.+. ...+..+..+++|++|+++++... ...+..+.++++|++|++++|.++.+|.. .+++|+
T Consensus 20 ~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 20 SQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp CTTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred cccccEEECCCCccc-ccChhhccccccccEEecCCCccC---CcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 467888888887763 233456788888888888877654 22344577888899999998888888876 788889
Q ss_pred eeeccCCCCccccCcceecccccc--CchhhhccccCCeeeecccccccccccCCCCCCc--cEEeeeCCCC--cccchh
Q 038400 255 YLDLSGNSKIKKLPKSIYCLELEE--LPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSL--RCLTISGCGD--LEHLFE 328 (504)
Q Consensus 255 ~L~l~~~~~~~~lp~~~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--l~~~~~ 328 (504)
+|++++|. +.. +|..++++++|++|++++|.+.. ..+..+++| +.|++++|.. ....|.
T Consensus 94 ~L~L~~N~-------------l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 94 HLDLSFNA-------------FDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp EEECCSSC-------------CSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred EEeccCCc-------------cccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccc
Confidence 99988875 433 45677777888888887766544 235556666 7777766544 233333
Q ss_pred hcCC--------------------------CC------------------------------------------------
Q 038400 329 EIDQ--------------------------LR------------------------------------------------ 334 (504)
Q Consensus 329 ~~~~--------------------------l~------------------------------------------------ 334 (504)
.++. ++
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH
Confidence 3322 22
Q ss_pred ---------cccEEeeccCCCccccCccC-----CCCCCccEEEeccCCCccccc-------------cccccCCCCCCC
Q 038400 335 ---------VLRTLSIVCCPRLISLPPAI-----KYLSSLETLFLYKCESLDLNI-------------NMEMEGEGSNHD 387 (504)
Q Consensus 335 ---------~L~~L~l~~~~~l~~l~~~l-----~~l~~L~~L~l~~~~~l~~~~-------------~~~~~~~~~~~~ 387 (504)
+|++|++++|...+.+|..+ +.+++|+.+++++|.. ..+. .....+......
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccc
Confidence 44555555543333566666 6666666666666543 2110 000000000000
Q ss_pred C-CCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCC--ccCcCCCCCCCcceEecccCccCCcCccC-C
Q 038400 388 R-KNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFM--ALPRSLKDLEALETLFILGCPKLSSLSED-M 463 (504)
Q Consensus 388 ~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~ 463 (504)
. ....++|+.|+++++.-...+|.++ ..+++|+.|++++|.... .+|..+..+++|++|++++|.....+|.. +
T Consensus 318 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 318 LCPSKISPFLHLDFSNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred cchhhCCcccEEEeECCccChhhhhhh--ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 0 1233467777777654333355555 566677777777664222 34455666777777777766433335543 5
Q ss_pred CCCCCcCeEeEeCCC
Q 038400 464 HHVTTLKSLTIGGCP 478 (504)
Q Consensus 464 ~~l~~L~~L~l~~c~ 478 (504)
..+++|+.|++++|.
T Consensus 396 ~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCCTTCCEEECCSSC
T ss_pred ccCccCCEEECcCCC
Confidence 556666666666664
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=1.4e-19 Score=182.06 Aligned_cols=221 Identities=19% Similarity=0.232 Sum_probs=112.4
Q ss_pred CcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccCc-hhhhccccCCeeeecccccccccc-
Q 038400 228 QFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP-KDIRHLTSLRAFALTTKQKSLQES- 304 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~- 304 (504)
.++++|+|++|.+..++ ..+.++++|++|++++|. +..++ ..+..+++|++|++++|.+...+.
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-------------IRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-------------CCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-------------CCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 34455555555554333 344555555555555443 22222 234445555555555444443332
Q ss_pred cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCCCccccccccccCCC
Q 038400 305 GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCESLDLNINMEMEGEG 383 (504)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 383 (504)
.+..+++|++|++++|......+..+..+++|++|++++|..+..++. .+..+++|++|++++|..-.+
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------- 200 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---------- 200 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC----------
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc----------
Confidence 344555555555555432222222444555555555555444444433 344455555555555432211
Q ss_pred CCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc-
Q 038400 384 SNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE- 461 (504)
Q Consensus 384 ~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~- 461 (504)
......++|+.|+++++ .+..+ |..+ ..+++|+.|+++++......+..+..+++|+.|+|++| .++.+|.
T Consensus 201 ---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 273 (440)
T 3zyj_A 201 ---PNLTPLIKLDELDLSGN-HLSAIRPGSF--QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHD 273 (440)
T ss_dssp ---CCCTTCSSCCEEECTTS-CCCEECTTTT--TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTT
T ss_pred ---cccCCCcccCEEECCCC-ccCccChhhh--ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChh
Confidence 11122234555555553 23333 3334 56677888888777433334556777888888888887 4555554
Q ss_pred CCCCCCCcCeEeEeCCC
Q 038400 462 DMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 462 ~~~~l~~L~~L~l~~c~ 478 (504)
.+..+++|+.|++++||
T Consensus 274 ~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSSCTTCCEEECCSSC
T ss_pred HhccccCCCEEEcCCCC
Confidence 35677888888887766
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=4e-20 Score=193.93 Aligned_cols=283 Identities=15% Similarity=0.045 Sum_probs=186.4
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCc-------------------------------ccchHHHHHHhc
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDE-------------------------------KISQSFVESCIS 225 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------------------------~~~~~~~~~~~~ 225 (504)
.++.+.+..+.......+..+..++.++.+.+..... ...... +. +.
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~-~~-~~ 282 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI-VK-FH 282 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGG-GS-CG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccc-cc-cc
Confidence 6788888887665455566677777777666532110 011111 22 67
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC---------chhhhccccCCeeeecc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL---------PKDIRHLTSLRAFALTT 296 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l---------p~~i~~l~~L~~L~l~~ 296 (504)
.+++|+.|+++++.+..+| .+..+++|++|++++|.. +.+|.. ....++.+ +..+..+++|++|++++
T Consensus 283 ~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR 359 (606)
T ss_dssp GGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCS
T ss_pred cCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcC
Confidence 7899999999999999888 889999999999999863 666632 21111111 11344566666666666
Q ss_pred cccccc---cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCcc
Q 038400 297 KQKSLQ---ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLD 372 (504)
Q Consensus 297 ~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~ 372 (504)
|.+... +..+..+++|++|++++|. +..+|..++.+++|+.|++++|......| ..+..+++|++|++++|....
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 655443 3445666666666666654 44455666666777777776664333333 356666777777777665332
Q ss_pred ccccccccCCCCCCCCCCCCCccceEEEccCCCccc-chhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecc
Q 038400 373 LNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLE-LPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFIL 451 (504)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 451 (504)
.. .......++|+.|+++++.-... +|..+ ..+++|+.|++++|......|..+..+++|++|+++
T Consensus 439 ~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 439 DF-----------DGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CC-----------TTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred cc-----------hhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 11 12223445899999988643332 45555 678999999999985544557778999999999999
Q ss_pred cCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 452 GCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 452 ~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
+|......|..+..+++|+.|++++|.
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 985555558888899999999999986
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=5.2e-20 Score=175.94 Aligned_cols=229 Identities=18% Similarity=0.197 Sum_probs=176.5
Q ss_pred CCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCc
Q 038400 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHM 253 (504)
Q Consensus 174 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L 253 (504)
.+..++++.+..+.+. ......+.++++|+.|+++++........ +..+..+++|++|++++|.+..+|..+..+++|
T Consensus 26 ~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 26 IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCC-SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEE-EHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCc-ccccccccccCEEECCCCccccChhhcCCCCCC
Confidence 4568899999888773 22234578999999999998765422111 123446899999999999999999999999999
Q ss_pred CeeeccCCCCccccCcceeccccccCch--hhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcc-cchhh
Q 038400 254 RYLDLSGNSKIKKLPKSIYCLELEELPK--DIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLE-HLFEE 329 (504)
Q Consensus 254 ~~L~l~~~~~~~~lp~~~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~-~~~~~ 329 (504)
++|++++|. +..++. .+..+++|++|++++|.+... +..+.++++|++|++++|.... .+|..
T Consensus 104 ~~L~l~~n~-------------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 104 EHLDFQHSN-------------LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp CEEECTTSE-------------EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred CEEECCCCc-------------ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH
Confidence 999999885 555543 678899999999999887654 4558899999999999976544 47888
Q ss_pred cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL 409 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 409 (504)
++.+++|++|++++|......|..+..+++|++|++++|......
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------------------- 215 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----------------------------------- 215 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC-----------------------------------
T ss_pred HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC-----------------------------------
Confidence 999999999999998644445778999999999999998532211
Q ss_pred hhhhhcCCCCCccEEEeccCCCCCccCcCCCCCC-CcceEecccCc
Q 038400 410 PQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLE-ALETLFILGCP 454 (504)
Q Consensus 410 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~ 454 (504)
+..+ ..+++|+.|++++|......|..+..++ +|++|++++|+
T Consensus 216 ~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 216 TFPY--KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SGGG--TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hhhc--cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 0112 4568888888888865555677778875 89999998875
No 39
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=2.1e-21 Score=186.46 Aligned_cols=249 Identities=14% Similarity=0.070 Sum_probs=182.7
Q ss_pred hhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecc
Q 038400 195 SLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCL 274 (504)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~ 274 (504)
..+..+++|+.|+++++... ...+..+..+++|++|++++|.+...+. +..+++|++|++++|.
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~------------ 91 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY------------ 91 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCC---CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE------------
T ss_pred HHhccCCCCCEEECcCCccC---cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc------------
Confidence 44556678999999877654 2344567888999999999998886655 8888999999999875
Q ss_pred ccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccC
Q 038400 275 ELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAI 354 (504)
Q Consensus 275 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l 354 (504)
+..+| ..++|++|++++|.+...+. ..+++|++|++++|......+..++.+++|++|++++|......+..+
T Consensus 92 -l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 92 -VQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp -EEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred -ccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 44433 34788999998888766653 347889999998876554445577888999999999886444344444
Q ss_pred -CCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCC
Q 038400 355 -KYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFM 433 (504)
Q Consensus 355 -~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 433 (504)
..+++|++|++++|..-... .....++|+.|+++++ .+..+|..+ ..+++|+.|++++| .++
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~~-------------~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~L~~N-~l~ 227 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDVK-------------GQVVFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNN-KLV 227 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEEE-------------CCCCCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTS-CCC
T ss_pred hhccCcCCEEECCCCcCcccc-------------cccccccCCEEECCCC-cCCcchhhh--cccCcccEEECcCC-ccc
Confidence 46788999999988643321 1112458888988885 566676665 56788999999887 567
Q ss_pred ccCcCCCCCCCcceEecccCccC-CcCccCCCCCCCcCeEeEeCCCchhhh
Q 038400 434 ALPRSLKDLEALETLFILGCPKL-SSLSEDMHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 434 ~l~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~~ 483 (504)
.+|..+..+++|+.|++++|+.. ..+|..+..+++|+.|++.+|..++..
T Consensus 228 ~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 78888888899999999888654 366666777888888888877766654
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.8e-20 Score=194.15 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=94.7
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCcc-ccCCCCc
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRK-IGNLKHM 253 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L 253 (504)
+..++.+++..+.+. ...+..+.++++|++|+++++... ...+..+.++++|++|++++|.+..+|.. ++++++|
T Consensus 25 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 457888888887763 233456788889999999877654 22334577888999999999988877654 8889999
Q ss_pred CeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccc-ccccc-ccCCCCCCccEEeeeCCCCcccchhhcC
Q 038400 254 RYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQ-KSLQE-SGIRSLGSLRCLTISGCGDLEHLFEEID 331 (504)
Q Consensus 254 ~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 331 (504)
++|++++|. +..+ ..|..++++++|++|++++|. ....+ ..+.++++|++|++++|......|..++
T Consensus 101 ~~L~Ls~n~-l~~~----------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 101 KYLNLMGNP-YQTL----------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CEEECTTCC-CSSS----------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred cEEECCCCc-cccc----------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 999998875 2211 123344555555555555544 22222 3455555555555555444333444444
Q ss_pred CCCcccEEeecc
Q 038400 332 QLRVLRTLSIVC 343 (504)
Q Consensus 332 ~l~~L~~L~l~~ 343 (504)
.+++|++|++.+
T Consensus 170 ~l~~L~~L~l~~ 181 (549)
T 2z81_A 170 SIRDIHHLTLHL 181 (549)
T ss_dssp TCSEEEEEEEEC
T ss_pred ccccCceEeccc
Confidence 444444444433
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=5.5e-20 Score=191.46 Aligned_cols=83 Identities=20% Similarity=0.230 Sum_probs=51.3
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccc--cCccccCCCCc
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEV--CPRKIGNLKHM 253 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--lp~~~~~l~~L 253 (504)
..++.+.+..+.+. ...+..+.++++|++|+++++..... ....+.++++|++|++++|.+.. +|..++++++|
T Consensus 76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 76 SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL---ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCS---TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred hhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccC---CCccccccccccEEecCCCccceecChhhhcccCCC
Confidence 45666666665542 22234566677777777765544311 11125677777777777777764 57777777777
Q ss_pred CeeeccCCC
Q 038400 254 RYLDLSGNS 262 (504)
Q Consensus 254 ~~L~l~~~~ 262 (504)
++|++++|.
T Consensus 152 ~~L~l~~n~ 160 (570)
T 2z63_A 152 EHLDLSSNK 160 (570)
T ss_dssp CEEECTTSC
T ss_pred CEEeCcCCc
Confidence 777777663
No 42
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.83 E-value=3.7e-21 Score=198.21 Aligned_cols=148 Identities=17% Similarity=0.220 Sum_probs=117.3
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhh---hh-----hccCCchhHHHhhhhCCChh
Q 038400 2 KCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY---LE-----QKESGILPILRLSYYQLPPH 73 (504)
Q Consensus 2 ~~Af~~~~~~~~~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~---~~-----~~~~~i~~~L~~sy~~L~~~ 73 (504)
++||+... ++++++++++||++|+|+||||+++|+.|+.+ . |+. +. .....+..+|++||+.||++
T Consensus 304 ~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~ 377 (549)
T 2a5y_B 304 AYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKMAQLNNKLESRGLVGVECITPYSYKSLAMA 377 (549)
T ss_dssp HTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHH
T ss_pred HHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHHHHhHHHhhcccHHHHHHHHhcccccccHH
Confidence 45776532 47899999999999999999999999999754 2 433 11 13567999999999999999
Q ss_pred hHhhhh-----------hhcccCCCCccChHHHHHHHHHc--cCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccC
Q 038400 74 LKQCVA-----------YCSIFPKDYPFDSFSLVQFWMAH--GLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLG 140 (504)
Q Consensus 74 ~k~~fl-----------~~a~fp~~~~i~~~~li~~w~~~--g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~ 140 (504)
+|.||+ |||+||+++.|+ ++.|+|+ ||+.........++++. ++++|++++|++....
T Consensus 378 lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~---- 448 (549)
T 2a5y_B 378 LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKR---- 448 (549)
T ss_dssp HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEEC----
T ss_pred HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecC----
Confidence 999999 999999999998 7899999 99987644566788888 9999999999987653
Q ss_pred CcEeEEEeChhHHHHHHHHhcCce
Q 038400 141 MGMFFFKMHDLMHDLALLVAKDEF 164 (504)
Q Consensus 141 ~~~~~~~mhdl~~~~~~~~~~~~~ 164 (504)
+....|+|||++|++|+.++.+++
T Consensus 449 ~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 449 MPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCceEEEeChHHHHHHHHHHHHHH
Confidence 134689999999999998887654
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=1.9e-19 Score=191.44 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=121.5
Q ss_pred CCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCCC
Q 038400 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLKH 252 (504)
Q Consensus 174 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~ 252 (504)
.+..++++++..+.+. ...+..+.++++|++|+++++... ...+..+.++++|++|++++|.+..+|. .++++++
T Consensus 23 ~~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp SCTTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 4568899999888763 233456888999999999877654 2234567789999999999999998886 5999999
Q ss_pred cCeeeccCCCCccccCcceeccccccCc-hhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchhhc
Q 038400 253 MRYLDLSGNSKIKKLPKSIYCLELEELP-KDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFEEI 330 (504)
Q Consensus 253 L~~L~l~~~~~~~~lp~~~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 330 (504)
|++|++++|. +..+| ..++++++|++|++++|..... +..++++++|++|++++|......+..+
T Consensus 99 L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 99 LTELHLMSNS-------------IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CSEEECCSSC-------------CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred CCEEECCCCc-------------cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence 9999999885 44444 3567788888888887765543 3456778888888888765433333433
Q ss_pred C--CCCcccEEeeccCCCccccCccCCCCCCccEE
Q 038400 331 D--QLRVLRTLSIVCCPRLISLPPAIKYLSSLETL 363 (504)
Q Consensus 331 ~--~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 363 (504)
+ .+++|++|++++|......|..+..+++|+.|
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred hccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 3 45778888887775333334444444333333
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=3.4e-19 Score=180.52 Aligned_cols=265 Identities=18% Similarity=0.233 Sum_probs=139.3
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCee
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYL 256 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 256 (504)
.++.+++..+.+.. .+. +..+++|+.|.++++...... + +.++++|++|++++|.+..+|. +.++++|++|
T Consensus 69 ~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~---~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 69 NLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADIT---P--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp TCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG---G--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred CCCEEECCCCccCC--chh-hhccccCCEEECCCCccccCh---h--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 44555555544321 122 455555555555544432111 1 4455555555555555555443 5555555665
Q ss_pred eccCCCCccccCcceec---------cccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccch
Q 038400 257 DLSGNSKIKKLPKSIYC---------LELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLF 327 (504)
Q Consensus 257 ~l~~~~~~~~lp~~~~~---------~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 327 (504)
++++|. +..+|..-.. ..+..++ .+.++++|++|++++|.....+ .+..+++|++|++++|.... ++
T Consensus 140 ~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~-~~ 215 (466)
T 1o6v_A 140 ELSSNT-ISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISD-IT 215 (466)
T ss_dssp EEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-CG
T ss_pred ECCCCc-cCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccc-cc
Confidence 555542 2222210000 0111111 1444555555555554443332 24455555555555543222 22
Q ss_pred hhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcc
Q 038400 328 EEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLL 407 (504)
Q Consensus 328 ~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 407 (504)
. ++.+++|+.|++++|. ++.++ .+..+++|+.|++++|...... .....++|+.|+++++ .+.
T Consensus 216 ~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~-------------~~~~l~~L~~L~l~~n-~l~ 278 (466)
T 1o6v_A 216 P-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLA-------------PLSGLTKLTELKLGAN-QIS 278 (466)
T ss_dssp G-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCG-------------GGTTCTTCSEEECCSS-CCC
T ss_pred c-ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccch-------------hhhcCCCCCEEECCCC-ccC
Confidence 1 4455555555555543 33332 3445555666666555422111 1223447888888875 455
Q ss_pred cchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 408 ELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 408 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
.++. + ..+++|+.|++++|. ++.++. +..+++|+.|++++| .+..++. +..+++|+.|++++|+
T Consensus 279 ~~~~-~--~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 279 NISP-L--AGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp CCGG-G--TTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSSC
T ss_pred cccc-c--cCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCCc
Confidence 5554 3 567888888888874 555554 678888888888888 4555544 6688899999998874
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=2.4e-19 Score=181.68 Aligned_cols=266 Identities=18% Similarity=0.251 Sum_probs=187.3
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
..++.+.+..+.+.. ... +..+++|++|+++++...... .+.++++|++|++++|.+..+|. +..+++|++
T Consensus 90 ~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 160 (466)
T 1o6v_A 90 TKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDID-----PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQ 160 (466)
T ss_dssp TTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSE
T ss_pred ccCCEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCCCh-----HHcCCCCCCEEECCCCccCCChh-hccCCcccE
Confidence 567888888776633 233 788899999999877654222 17788999999999998877653 566666666
Q ss_pred eeccCCCCccccCcc----------eeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCccc
Q 038400 256 LDLSGNSKIKKLPKS----------IYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEH 325 (504)
Q Consensus 256 L~l~~~~~~~~lp~~----------~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 325 (504)
|+++++ +..++.. +..+.+..++ .+..+++|++|++++|.+...++ ++.+++|+.|++++|. +..
T Consensus 161 L~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~ 235 (466)
T 1o6v_A 161 LSFGNQ--VTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKD 235 (466)
T ss_dssp EEEEES--CCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCC
T ss_pred eecCCc--ccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCC-ccc
Confidence 665421 1222110 0122244444 47788999999999888766654 7788999999998865 444
Q ss_pred chhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCC
Q 038400 326 LFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQ 405 (504)
Q Consensus 326 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 405 (504)
+ ..+..+++|+.|++++|. +..++. +..+++|+.|++++|...... .....++|+.|+++++ .
T Consensus 236 ~-~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-------------~~~~l~~L~~L~L~~n-~ 298 (466)
T 1o6v_A 236 I-GTLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNIS-------------PLAGLTALTNLELNEN-Q 298 (466)
T ss_dssp C-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCG-------------GGTTCTTCSEEECCSS-C
T ss_pred c-hhhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCccCccc-------------cccCCCccCeEEcCCC-c
Confidence 4 367888999999999885 555554 788899999999988543321 1223458899999886 4
Q ss_pred cccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCc
Q 038400 406 LLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPA 479 (504)
Q Consensus 406 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 479 (504)
+..++. + ..+++|+.|++++|. +..++. +..+++|+.|++++| .+..++ .+..+++|+.|++++|+.
T Consensus 299 l~~~~~-~--~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 299 LEDISP-I--SNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CSCCGG-G--GGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred ccCchh-h--cCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 555554 3 567899999999884 555444 678899999999988 566664 577889999999998863
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=4.6e-19 Score=167.45 Aligned_cols=198 Identities=23% Similarity=0.316 Sum_probs=114.4
Q ss_pred CcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecccc-cccc-c
Q 038400 228 QFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQ-KSLQ-E 303 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~-~~~~-~ 303 (504)
+.|++|+++++.++.+| ..+..+++|++|++++|. +..+ |..+..+++|++|++++|. +... +
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-------------LARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------CCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-------------cceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 45666666666666544 345666666666666553 3333 3345555666666666553 3333 3
Q ss_pred ccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCC
Q 038400 304 SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGE 382 (504)
Q Consensus 304 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 382 (504)
..+..+++|++|++++|......+..++.+++|++|++++|. ++.++ ..++.+++|++|++++|.
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~------------- 164 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR------------- 164 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-------------
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCc-------------
Confidence 445556666666666554333334455555666666665553 33333 235555556666555542
Q ss_pred CCCCCCCCCCCccceEEEccCCCcccchhh-hhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc-
Q 038400 383 GSNHDRKNTRPHLRRVVIGEITQLLELPQW-LLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS- 460 (504)
Q Consensus 383 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~- 460 (504)
++.++.. + ..+++|+.|++++|......|..+..+++|+.|++++| .++.++
T Consensus 165 -----------------------l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 218 (285)
T 1ozn_A 165 -----------------------ISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPT 218 (285)
T ss_dssp -----------------------CCEECTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCH
T ss_pred -----------------------ccccCHHHh--cCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCH
Confidence 3333332 3 45677888888877543344677778888888888887 455555
Q ss_pred cCCCCCCCcCeEeEeCCC
Q 038400 461 EDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 461 ~~~~~l~~L~~L~l~~c~ 478 (504)
..+..+++|+.|++++|+
T Consensus 219 ~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp HHHTTCTTCCEEECCSSC
T ss_pred HHcccCcccCEEeccCCC
Confidence 346778888888888776
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=187.25 Aligned_cols=179 Identities=18% Similarity=0.128 Sum_probs=99.6
Q ss_pred ccccCCeeeecccccccc---cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCc
Q 038400 285 HLTSLRAFALTTKQKSLQ---ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSL 360 (504)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L 360 (504)
.+++|++|++++|.+... +..+..+++|++|++++|. +..++..++.+++|++|++++|......+ ..+..+++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 344444555544443322 2334445555555555532 22333335555555555555543222222 234555566
Q ss_pred cEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCc-ccchhhhhcCCCCCccEEEeccCCCCCccCcCC
Q 038400 361 ETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQL-LELPQWLLQGSTDTLQNLLIIDCPNFMALPRSL 439 (504)
Q Consensus 361 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 439 (504)
++|++++|...... .......++|+.|+++++.-. ..+|.++ ..+++|+.|++++|......|..+
T Consensus 424 ~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 424 IYLDISHTHTRVAF-----------NGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp CEEECTTSCCEECC-----------TTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTT
T ss_pred CEEeCcCCcccccc-----------hhhhhcCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCCccccCChhhh
Confidence 66666555432211 112223457888888776432 2456555 667888888888875433447777
Q ss_pred CCCCCcceEecccCccCCcCc-cCCCCCCCcCeEeEeCCC
Q 038400 440 KDLEALETLFILGCPKLSSLS-EDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 440 ~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~ 478 (504)
..+++|++|++++| .++.+| ..+.++++|+.|++++|+
T Consensus 491 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 491 NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 88888888888887 455544 446778888888888765
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=5.4e-20 Score=179.49 Aligned_cols=255 Identities=16% Similarity=0.206 Sum_probs=193.1
Q ss_pred CCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCcc-ccCCCC
Q 038400 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRK-IGNLKH 252 (504)
Q Consensus 174 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~l~~ 252 (504)
.+..++.+.+..+.+. ......+.++++|++|+++++... ...+..+.++++|++|++++|.++.+|.. ++++++
T Consensus 50 ~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 50 LTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp CCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred ccccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccC---ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 3457899999888773 223346889999999999977654 22344578899999999999999988876 899999
Q ss_pred cCeeeccCCCCccccCcceeccccccCch--hhhccccCCeeeecccc-cccc-cccCCCCCCccEEeeeCCCCcccchh
Q 038400 253 MRYLDLSGNSKIKKLPKSIYCLELEELPK--DIRHLTSLRAFALTTKQ-KSLQ-ESGIRSLGSLRCLTISGCGDLEHLFE 328 (504)
Q Consensus 253 L~~L~l~~~~~~~~lp~~~~~~~l~~lp~--~i~~l~~L~~L~l~~~~-~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~ 328 (504)
|++|++++|. +..+|. .+..+++|++|++++|. .... +..+.++++|++|++++|......|.
T Consensus 126 L~~L~L~~n~-------------l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 126 LTFLNLLGNP-------------YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp CSEEECTTCC-------------CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CCEEECCCCC-------------CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 9999999985 566665 57889999999999873 4433 45789999999999999876666688
Q ss_pred hcCCCCcccEEeeccCCCccccCcc-CCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCC---
Q 038400 329 EIDQLRVLRTLSIVCCPRLISLPPA-IKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEIT--- 404 (504)
Q Consensus 329 ~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--- 404 (504)
.++.+++|++|++++|. ++.+|.. +..+++|+.|++++|..-..... ..........++.+++.++.
T Consensus 193 ~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFS--------ELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------CCCCCCEEEEESCBCCH
T ss_pred HHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCcccccccc--------ccccccccchhhccccccccccC
Confidence 99999999999999986 5666553 34588999999999864432210 00111122356666666642
Q ss_pred -CcccchhhhhcCCCCCccEEEeccCCCCCccCcCC-CCCCCcceEecccCccCC
Q 038400 405 -QLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSL-KDLEALETLFILGCPKLS 457 (504)
Q Consensus 405 -~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~ 457 (504)
.+..+|.++ ..+++|+.|++++| .++.+|..+ ..+++|++|++++|+...
T Consensus 264 ~~l~~l~~~l--~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 264 ESLFQVMKLL--NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHHH--HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhhHHHH--hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 233467776 67899999999998 577888874 899999999999986433
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=7.2e-19 Score=176.80 Aligned_cols=221 Identities=20% Similarity=0.280 Sum_probs=169.7
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
++++.|+++++.+.. .....|.++++|++|+|++|.+..++ ..+.++++|++|++++|. +..+
T Consensus 64 ~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-------------l~~~ 127 (440)
T 3zyj_A 64 TNTRLLNLHENQIQI---IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-------------LTTI 127 (440)
T ss_dssp TTCSEEECCSCCCCE---ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-------------CSSC
T ss_pred CCCcEEEccCCcCCe---eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-------------CCee
Confidence 578889988776552 22345788999999999999988665 678889999999999885 5566
Q ss_pred ch-hhhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchh-hcCCCCcccEEeeccCCCccccCccCCC
Q 038400 280 PK-DIRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFE-EIDQLRVLRTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 280 p~-~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~l~~ 356 (504)
|. .+..+++|++|++++|.+...+. .+.++++|++|++++|+.+..++. .+..+++|++|++++|. ++.+|. +..
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~ 205 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTP 205 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTT
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCC
Confidence 54 47788999999999888766543 688899999999999888877765 57889999999999884 677775 788
Q ss_pred CCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccch-hhhhcCCCCCccEEEeccCCCCCcc
Q 038400 357 LSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELP-QWLLQGSTDTLQNLLIIDCPNFMAL 435 (504)
Q Consensus 357 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l 435 (504)
+++|+.|++++|...... .......++|+.|++.++ .+..++ ..+ ..+++|+.|+|++| .++.+
T Consensus 206 l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~ 270 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIR-----------PGSFQGLMHLQKLWMIQS-QIQVIERNAF--DNLQSLVEINLAHN-NLTLL 270 (440)
T ss_dssp CSSCCEEECTTSCCCEEC-----------TTTTTTCTTCCEEECTTC-CCCEECTTSS--TTCTTCCEEECTTS-CCCCC
T ss_pred CcccCEEECCCCccCccC-----------hhhhccCccCCEEECCCC-ceeEEChhhh--cCCCCCCEEECCCC-CCCcc
Confidence 999999999998544322 222334458999999885 455443 334 67899999999998 46666
Q ss_pred C-cCCCCCCCcceEecccCc
Q 038400 436 P-RSLKDLEALETLFILGCP 454 (504)
Q Consensus 436 ~-~~~~~l~~L~~L~l~~c~ 454 (504)
| ..+..+++|+.|++++|+
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSC
T ss_pred ChhHhccccCCCEEEcCCCC
Confidence 5 446889999999998875
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=1.1e-18 Score=175.79 Aligned_cols=269 Identities=16% Similarity=0.162 Sum_probs=149.1
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
..++.+.+..+.+..- + +..+++|+.|+++++..... .+.++++|++|++++|.++.+| ++.+++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~------~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL------DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp TTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee------ecCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 4677888877766432 2 66788888888887765422 1677888888888888888775 788888888
Q ss_pred eeccCCCCccccCcce---------e-ccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCccc
Q 038400 256 LDLSGNSKIKKLPKSI---------Y-CLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEH 325 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~---------~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 325 (504)
|++++|. ++.+|-.- . +..+..+ .+..+++|++|++++|.+...+ ++.+++|+.|++++|. +..
T Consensus 132 L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~-l~~ 205 (457)
T 3bz5_A 132 LNCARNT-LTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITK 205 (457)
T ss_dssp EECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC-CSC
T ss_pred EECCCCc-cceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc-CCe
Confidence 8888774 33232100 0 0012222 2445555666666655554443 5556666666665543 222
Q ss_pred chhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCC
Q 038400 326 LFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQ 405 (504)
Q Consensus 326 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 405 (504)
+ .++.+++|+.|++++|. ++.+| ++.+++|+.|++++|..-..... .-...........+|+.|+++++..
T Consensus 206 ~--~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l~~~~~~----~l~~L~~L~l~~n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 206 L--DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELDVS----TLSKLTTLHCIQTDLLEIDLTHNTQ 276 (457)
T ss_dssp C--CCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCCCT----TCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred e--ccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCcCCCcCHH----HCCCCCEEeccCCCCCEEECCCCcc
Confidence 3 25566666666666653 44454 55666666666666542221100 0000000000011344455555544
Q ss_pred cccchhhhhcCCCCCccEEEeccCCCCCccCc--------CCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCC
Q 038400 406 LLELPQWLLQGSTDTLQNLLIIDCPNFMALPR--------SLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGC 477 (504)
Q Consensus 406 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--------~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 477 (504)
+..+|. ..+++|+.|++++|..+..+|. .+..+++|++|++++| .++.++ +.++++|+.|+++++
T Consensus 277 ~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 277 LIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS
T ss_pred CCcccc----cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCC
Confidence 444441 3457777777777765554442 1344556666666665 455553 566777777777665
Q ss_pred C
Q 038400 478 P 478 (504)
Q Consensus 478 ~ 478 (504)
.
T Consensus 350 ~ 350 (457)
T 3bz5_A 350 H 350 (457)
T ss_dssp C
T ss_pred C
Confidence 3
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=9.5e-20 Score=185.08 Aligned_cols=236 Identities=13% Similarity=0.061 Sum_probs=166.5
Q ss_pred CCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 200 LGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+++|+.|+++++... ...+..+..+++|++|+|++|.++..++ ++.+++|++|++++|. +..+
T Consensus 33 ~~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-------------l~~l 95 (487)
T 3oja_A 33 AWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-------------VQEL 95 (487)
T ss_dssp GGGCCEEECCSSCCC---CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-------------EEEE
T ss_pred CCCccEEEeeCCcCC---CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-------------CCCC
Confidence 347888888877654 2233457788888888888888876554 8888888888888874 4444
Q ss_pred chhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCC-CCC
Q 038400 280 PKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIK-YLS 358 (504)
Q Consensus 280 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~-~l~ 358 (504)
| ..++|++|++++|.+...+. ..+++|+.|++++|......|..++.+++|++|++++|......|..+. .++
T Consensus 96 ~----~~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 96 L----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp E----ECTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred C----CCCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 3 23788888888888776654 3568888888888765555566778888888888888865555566664 688
Q ss_pred CccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcC
Q 038400 359 SLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRS 438 (504)
Q Consensus 359 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 438 (504)
+|+.|++++|..-... .....++|+.|+++++ .+..+|..+ ..+++|+.|++++| .+..+|..
T Consensus 170 ~L~~L~Ls~N~l~~~~-------------~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~l~~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVK-------------GQVVFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp TCCEEECTTSCCCEEE-------------CCCCCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTS-CCCEECTT
T ss_pred cccEEecCCCcccccc-------------ccccCCCCCEEECCCC-CCCCCCHhH--cCCCCccEEEecCC-cCcccchh
Confidence 8888888888643221 1113457888888774 466666555 56678888888876 46667777
Q ss_pred CCCCCCcceEecccCccC-CcCccCCCCCCCcCeEeEe
Q 038400 439 LKDLEALETLFILGCPKL-SSLSEDMHHVTTLKSLTIG 475 (504)
Q Consensus 439 ~~~l~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~ 475 (504)
+..+++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus 233 l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 777888888888877544 3556666667777766664
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=4.3e-19 Score=179.05 Aligned_cols=221 Identities=19% Similarity=0.239 Sum_probs=172.2
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
++++.|+++++.+. ...+..|.++++|++|+|++|.+..++ ..+..+++|++|++++|. +..+
T Consensus 75 ~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~ 138 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ---MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-------------LTVI 138 (452)
T ss_dssp TTCSEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-------------CSBC
T ss_pred CCccEEECcCCcCc---eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-------------CCcc
Confidence 57899999877654 223445788999999999999998665 678899999999999885 5556
Q ss_pred chh-hhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchh-hcCCCCcccEEeeccCCCccccCccCCC
Q 038400 280 PKD-IRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFE-EIDQLRVLRTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 280 p~~-i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~l~~ 356 (504)
|.. +..+++|++|++++|.+...+. .+.++++|+.|++++|+.+..++. .++.+++|++|++++|. +..+|. +..
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~ 216 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-LTP 216 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC-CTT
T ss_pred ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc-ccc
Confidence 544 6789999999999888776543 688899999999999888888775 57889999999999985 666764 788
Q ss_pred CCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCcc
Q 038400 357 LSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMAL 435 (504)
Q Consensus 357 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l 435 (504)
+++|+.|++++|...... .......++|+.|+++++. +..+ +..+ ..+++|+.|+|++| .++.+
T Consensus 217 l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~ 281 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIR-----------PGSFHGLSSLKKLWVMNSQ-VSLIERNAF--DGLASLVELNLAHN-NLSSL 281 (452)
T ss_dssp CTTCCEEECTTSCCSEEC-----------GGGGTTCTTCCEEECTTSC-CCEECTTTT--TTCTTCCEEECCSS-CCSCC
T ss_pred cccccEEECcCCcCcccC-----------cccccCccCCCEEEeCCCc-CceECHHHh--cCCCCCCEEECCCC-cCCcc
Confidence 999999999998654432 1122334589999999864 4444 4445 67899999999998 56666
Q ss_pred C-cCCCCCCCcceEecccCc
Q 038400 436 P-RSLKDLEALETLFILGCP 454 (504)
Q Consensus 436 ~-~~~~~l~~L~~L~l~~c~ 454 (504)
| ..+..+++|+.|++++|+
T Consensus 282 ~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 282 PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSSTTCTTCCEEECCSSC
T ss_pred ChHHhccccCCCEEEccCCC
Confidence 5 456889999999999875
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=2.6e-19 Score=171.88 Aligned_cols=238 Identities=12% Similarity=0.090 Sum_probs=183.9
Q ss_pred eeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccCch
Q 038400 203 VRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK 281 (504)
Q Consensus 203 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~ 281 (504)
++...++... ........+..+++|++|++++|.++.++ ..+..+++|++|++++|. +..++.
T Consensus 12 l~i~~ls~~~---l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~ 75 (317)
T 3o53_A 12 YKIEKVTDSS---LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-------------LYETLD 75 (317)
T ss_dssp EEEESCCTTT---HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-------------CEEEEE
T ss_pred eeEeeccccc---hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-------------CCcchh
Confidence 4444444332 23445566778889999999999999765 689999999999999986 444443
Q ss_pred hhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCcc
Q 038400 282 DIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLE 361 (504)
Q Consensus 282 ~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~ 361 (504)
+..+++|++|++++|.+...+ ..++|++|++++|. +..++. ..+++|++|++++|......+..++.+++|+
T Consensus 76 -~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 76 -LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp -ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred -hhhcCCCCEEECcCCcccccc----CCCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence 788999999999999876554 34899999999975 444442 3578999999999864444455788899999
Q ss_pred EEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCC
Q 038400 362 TLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKD 441 (504)
Q Consensus 362 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 441 (504)
+|++++|........ ......++|+.|+++++ .++.++... .+++|+.|++++| .++.+|..+..
T Consensus 148 ~L~Ls~N~l~~~~~~----------~~~~~l~~L~~L~L~~N-~l~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~~~ 212 (317)
T 3o53_A 148 YLDLKLNEIDTVNFA----------ELAASSDTLEHLNLQYN-FIYDVKGQV---VFAKLKTLDLSSN-KLAFMGPEFQS 212 (317)
T ss_dssp EEECTTSCCCEEEGG----------GGGGGTTTCCEEECTTS-CCCEEECCC---CCTTCCEEECCSS-CCCEECGGGGG
T ss_pred EEECCCCCCCcccHH----------HHhhccCcCCEEECCCC-cCccccccc---ccccCCEEECCCC-cCCcchhhhcc
Confidence 999999865443211 00112358999999986 466665443 4799999999998 57788888999
Q ss_pred CCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCch
Q 038400 442 LEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 442 l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 480 (504)
+++|+.|++++| .++.+|..+..+++|+.|++++|+-.
T Consensus 213 l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 213 AAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 999999999998 68889999999999999999998754
No 54
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=3.3e-19 Score=185.14 Aligned_cols=127 Identities=22% Similarity=0.246 Sum_probs=86.3
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcC
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMR 254 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~ 254 (504)
+..++.+++..+.+. ...+..+..+++|++|+++++... ...+..|.++++|++|++++|.++.+|.. .+++|+
T Consensus 51 ~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 51 PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCC---cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 456777777776652 222356677777777777766544 22234466777777777777777777766 677777
Q ss_pred eeeccCCCCccccCcceeccccccC--chhhhccccCCeeeecccccccccccCCCCCCc--cEEeeeCCCC
Q 038400 255 YLDLSGNSKIKKLPKSIYCLELEEL--PKDIRHLTSLRAFALTTKQKSLQESGIRSLGSL--RCLTISGCGD 322 (504)
Q Consensus 255 ~L~l~~~~~~~~lp~~~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 322 (504)
+|++++|. +..+ |..++++++|++|++++|.+.. ..+..+++| +.|++++|..
T Consensus 125 ~L~Ls~N~-------------l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 125 HLDLSFND-------------FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp EEECCSSC-------------CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred EEECCCCC-------------ccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccc
Confidence 77777764 4443 4678888889999888877654 245556666 8888888755
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=5.1e-18 Score=175.75 Aligned_cols=274 Identities=17% Similarity=0.170 Sum_probs=190.0
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC---cc-ccCCC
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP---RK-IGNLK 251 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp---~~-~~~l~ 251 (504)
..++.+.+..+.+. ...+..+..+++|+.|.+..+... ......+..+++|++|++++|.+..++ .. ...+.
T Consensus 148 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 148 TSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESA---FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp CEEEEEEEEETTCC-EECTTTTTTCSEEEEEEEECSBST---THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred cccCeeeccCCccc-ccChhhhhccccCceEecccCccc---ccchhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence 45777777776653 234556677778888887765533 233344567888888888888877542 11 12233
Q ss_pred CcCeeeccC----------------------------CCCcc--cc------------------------Cc--------
Q 038400 252 HMRYLDLSG----------------------------NSKIK--KL------------------------PK-------- 269 (504)
Q Consensus 252 ~L~~L~l~~----------------------------~~~~~--~l------------------------p~-------- 269 (504)
+|+.|++++ |...+ .+ |.
T Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~ 303 (549)
T 2z81_A 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303 (549)
T ss_dssp CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence 344444333 21100 00 00
Q ss_pred ------------ceeccccccCchhh-hccccCCeeeecccccccc----cccCCCCCCccEEeeeCCCCcccch---hh
Q 038400 270 ------------SIYCLELEELPKDI-RHLTSLRAFALTTKQKSLQ----ESGIRSLGSLRCLTISGCGDLEHLF---EE 329 (504)
Q Consensus 270 ------------~~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~----~~~~~~l~~L~~L~l~~~~~l~~~~---~~ 329 (504)
.+..+.+..+|..+ ..+++|++|++++|.+... +..++.+++|++|++++|. +..++ ..
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 382 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEI 382 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHH
T ss_pred hhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhh
Confidence 01123355677776 4799999999998887653 2347889999999999974 44444 45
Q ss_pred cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL 409 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 409 (504)
++.+++|++|++++|. ++.+|..+..+++|++|++++|..-.+. ...+.+|+.|+++++ .++.+
T Consensus 383 ~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~~l~--------------~~~~~~L~~L~Ls~N-~l~~~ 446 (549)
T 2z81_A 383 LLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVK--------------TCIPQTLEVLDVSNN-NLDSF 446 (549)
T ss_dssp GGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCSCCC--------------TTSCTTCSEEECCSS-CCSCC
T ss_pred hhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCccccc--------------chhcCCceEEECCCC-Chhhh
Confidence 8899999999999984 7789998999999999999998633211 111248999999986 45554
Q ss_pred hhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc-cCCCCCCCcCeEeEeCCC
Q 038400 410 PQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS-EDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 410 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~ 478 (504)
+ ..+++|+.|++++| .++.+|. ...+++|++|++++| .++.++ ..+..+++|+.|++++|+
T Consensus 447 ~-----~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 447 S-----LFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp C-----CCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred c-----ccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 3 46799999999998 5778887 567999999999998 455554 457899999999999887
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=8.8e-19 Score=190.29 Aligned_cols=262 Identities=15% Similarity=0.102 Sum_probs=181.3
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCc-ccc-CccccCCCCcCeeeccCCCCccccCcceecccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAI-EVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLEL 276 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l 276 (504)
-.+++++|+++++.+. ...+..+.++++|++|++++|.. ..+ |..+.++++|++|++++|. +
T Consensus 22 lp~~l~~LdLs~N~i~---~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-------------l 85 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR---TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-------------I 85 (844)
T ss_dssp SCTTCCEEEEESCCCC---EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-------------C
T ss_pred CCCCcCEEECCCCcCC---ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-------------C
Confidence 4578999999987754 22344588999999999999954 455 7789999999999999986 4
Q ss_pred ccC-chhhhccccCCeeeeccccccc-ccc--cCCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccC
Q 038400 277 EEL-PKDIRHLTSLRAFALTTKQKSL-QES--GIRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLP 351 (504)
Q Consensus 277 ~~l-p~~i~~l~~L~~L~l~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~ 351 (504)
..+ |..+.++++|++|++++|.+.. .+. .+.++++|++|++++|......+ ..++++++|++|++++|......+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 444 6678899999999999998765 233 38999999999999986554433 578999999999999987555566
Q ss_pred ccCCCC--CCccEEEeccCCCcccccc----------------ccccCCC---CC---CCCCC-----------------
Q 038400 352 PAIKYL--SSLETLFLYKCESLDLNIN----------------MEMEGEG---SN---HDRKN----------------- 390 (504)
Q Consensus 352 ~~l~~l--~~L~~L~l~~~~~l~~~~~----------------~~~~~~~---~~---~~~~~----------------- 390 (504)
..+..+ ++|+.|++++|........ ....+.. .. .....
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 777766 8999999998864321100 0000000 00 00000
Q ss_pred ------------------CCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEeccc
Q 038400 391 ------------------TRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILG 452 (504)
Q Consensus 391 ------------------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 452 (504)
..++|+.|+++++.-....+..+ ..+++|+.|++++|..-...|..+..+++|++|++++
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 01356666666543222223333 5567788888877743334456677888888888888
Q ss_pred CccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 453 CPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 453 c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
|..-...|..+..+++|+.|++++|.
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCC
Confidence 74333346677788888888888774
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=8.7e-19 Score=186.31 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=125.7
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+++++|+++++... ...+..+.++++|++|++++|.+..+ |..++++++|++|++++|. +..+
T Consensus 25 ~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~l 88 (680)
T 1ziw_A 25 TNITVLNLTHNQLR---RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-------------LSQL 88 (680)
T ss_dssp TTCSEEECCSSCCC---CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-------------CCCC
T ss_pred CCCcEEECCCCCCC---CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-------------cCcc
Confidence 68999999987654 23344588899999999999999865 5678999999999999885 6677
Q ss_pred ch-hhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cC--
Q 038400 280 PK-DIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AI-- 354 (504)
Q Consensus 280 p~-~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l-- 354 (504)
|. .++++++|++|++++|.+...+ ..++++++|++|++++|......|..++.+++|++|++++|. ++.++. .+
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 167 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDI 167 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGG
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhc
Confidence 76 4889999999999998877665 568999999999999987666667788999999999999986 444443 32
Q ss_pred CCCCCccEEEeccCCCc
Q 038400 355 KYLSSLETLFLYKCESL 371 (504)
Q Consensus 355 ~~l~~L~~L~l~~~~~l 371 (504)
..+++|+.|++++|..-
T Consensus 168 ~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIK 184 (680)
T ss_dssp GTTCEESEEECTTCCCC
T ss_pred cccccccEEECCCCccc
Confidence 35689999999998543
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=6.4e-18 Score=175.32 Aligned_cols=198 Identities=22% Similarity=0.231 Sum_probs=137.4
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+++|++|++++|.++.+|. .+.+|++|++++|. +..+|.. +++|++|++++|.+...+.
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-------------l~~lp~~---l~~L~~L~Ls~N~l~~l~~- 158 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-------------LTSLPVL---PPGLQELSVSDNQLASLPA- 158 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-------------CSCCCCC---CTTCCEEECCSSCCSCCCC-
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-------------CCcCCCC---CCCCCEEECcCCcCCCcCC-
Confidence 34555555555555555544 34455555555543 4455543 3677777877776665543
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSN 385 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 385 (504)
.+++|+.|++++| .+..+| ..+++|+.|++++|. +..+|.. +++|+.|++++|..-.+.
T Consensus 159 --~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l~~l~----------- 217 (622)
T 3g06_A 159 --LPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLP----------- 217 (622)
T ss_dssp --CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSSCC-----------
T ss_pred --ccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCCc---cchhhEEECcCCcccccC-----------
Confidence 3467777777774 344555 456788888888874 5566653 467888888877533211
Q ss_pred CCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCC
Q 038400 386 HDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHH 465 (504)
Q Consensus 386 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 465 (504)
...++|+.|+++++ .++.+| ..+++|+.|++++| .++.+|. .+++|+.|++++| .++.+|..+.+
T Consensus 218 ----~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~ 282 (622)
T 3g06_A 218 ----ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIH 282 (622)
T ss_dssp ----CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGG
T ss_pred ----CCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhh
Confidence 12358999999986 677777 34589999999998 6778887 6789999999998 67899999999
Q ss_pred CCCcCeEeEeCCCc
Q 038400 466 VTTLKSLTIGGCPA 479 (504)
Q Consensus 466 l~~L~~L~l~~c~~ 479 (504)
+++|+.|++++|+-
T Consensus 283 l~~L~~L~L~~N~l 296 (622)
T 3g06_A 283 LSSETTVNLEGNPL 296 (622)
T ss_dssp SCTTCEEECCSCCC
T ss_pred ccccCEEEecCCCC
Confidence 99999999999974
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=7.1e-18 Score=159.38 Aligned_cols=198 Identities=26% Similarity=0.295 Sum_probs=133.2
Q ss_pred hcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
+.++++++.++++++.++.+|..+. +++++|++++|. +..+ |..+..+++|++|++++|.+...
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-------------LYTFSLATLMPYTRLTQLNLDRAELTKL 70 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-------------CSEEEGGGGTTCTTCCEEECTTSCCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-------------CCccCHHHhhcCCCCCEEECCCCccCcc
Confidence 4567788888888888888887664 688888888875 4444 34577888888888888877766
Q ss_pred cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccC
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEG 381 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 381 (504)
+. .+.+++|++|++++| .+..+|..+..+++|++|++++|. ++.+| ..+..+++|++|++++|..-.
T Consensus 71 ~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~--------- 138 (290)
T 1p9a_G 71 QV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT--------- 138 (290)
T ss_dssp EC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC---------
T ss_pred cC-CCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc---------
Confidence 54 377888888888885 456777778888888888888875 55554 567888888888888874322
Q ss_pred CCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcC-CCCCCCcceEecccCccCCcCc
Q 038400 382 EGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRS-LKDLEALETLFILGCPKLSSLS 460 (504)
Q Consensus 382 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~ 460 (504)
+|...+ ..+++|+.|+++++ .++.+|.. +..+++|+.|++++| .++.+|
T Consensus 139 ---------------------------~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip 188 (290)
T 1p9a_G 139 ---------------------------LPPGLL-TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIP 188 (290)
T ss_dssp ---------------------------CCTTTT-TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred ---------------------------cChhhc-ccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccC
Confidence 111110 23455666666555 34444443 355666666666665 455666
Q ss_pred cCCCCCCCcCeEeEeCCC
Q 038400 461 EDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 461 ~~~~~l~~L~~L~l~~c~ 478 (504)
..+...++|+.|++.++|
T Consensus 189 ~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTTCCCSEEECCSCC
T ss_pred hhhcccccCCeEEeCCCC
Confidence 665556666666666544
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=5.5e-18 Score=160.06 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=125.5
Q ss_pred CCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 200 LGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
.++++.|.++++... ...+..+..+++|++|++++|.+..+ |..+..+++|++|++++|..++.++
T Consensus 31 ~~~l~~L~l~~n~i~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~---------- 97 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD---------- 97 (285)
T ss_dssp CTTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC----------
T ss_pred CCCceEEEeeCCcCC---ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC----------
Confidence 468999999987655 22334578899999999999999976 6789999999999999885333321
Q ss_pred CchhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCC
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKY 356 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~ 356 (504)
|..+..+++|++|++++|.+... +..+.++++|++|++++|......+..++.+++|++|++++|. ++.++. .+..
T Consensus 98 -~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 175 (285)
T 1ozn_A 98 -PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRG 175 (285)
T ss_dssp -TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred -HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcC
Confidence 45678899999999999887765 4568899999999999976444334558999999999999985 666665 5889
Q ss_pred CCCccEEEeccCCC
Q 038400 357 LSSLETLFLYKCES 370 (504)
Q Consensus 357 l~~L~~L~l~~~~~ 370 (504)
+++|+.|++++|..
T Consensus 176 l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 176 LHSLDRLLLHQNRV 189 (285)
T ss_dssp CTTCCEEECCSSCC
T ss_pred ccccCEEECCCCcc
Confidence 99999999999864
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=2.6e-18 Score=163.95 Aligned_cols=196 Identities=21% Similarity=0.248 Sum_probs=115.0
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
++++|+.|.+.++..... + .+..+++|++|++++|.+..++. +..+++|++|++++|. +..
T Consensus 39 ~l~~L~~L~l~~~~i~~l----~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-------------l~~ 99 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI----E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-------------LKN 99 (308)
T ss_dssp HHHTCCEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-------------CSC
T ss_pred HcCCcCEEEeeCCCccCc----h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-------------CCC
Confidence 345566666655443311 1 24556666666666666665555 6666666666666654 333
Q ss_pred CchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCC
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLS 358 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~ 358 (504)
+| .+..+++|++|++++|.+...+ .+..+++|++|++++|. +..++. ++.+++|+.|++++|. +..++. +..++
T Consensus 100 ~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~ 173 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLS 173 (308)
T ss_dssp CG-GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCT
T ss_pred ch-hhcCCCCCCEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCC
Confidence 33 3555666666666666555443 25666666666666643 333332 5556666666666653 444444 55566
Q ss_pred CccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcC
Q 038400 359 SLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRS 438 (504)
Q Consensus 359 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 438 (504)
+|+.|++++|. +..++. + ..+++|+.|++++| .++.++.
T Consensus 174 ~L~~L~l~~n~------------------------------------l~~~~~-l--~~l~~L~~L~L~~N-~l~~~~~- 212 (308)
T 1h6u_A 174 KLTTLKADDNK------------------------------------ISDISP-L--ASLPNLIEVHLKNN-QISDVSP- 212 (308)
T ss_dssp TCCEEECCSSC------------------------------------CCCCGG-G--GGCTTCCEEECTTS-CCCBCGG-
T ss_pred CCCEEECCCCc------------------------------------cCcChh-h--cCCCCCCEEEccCC-ccCcccc-
Confidence 66666665552 233332 2 45688999999888 4566663
Q ss_pred CCCCCCcceEecccCccCCcCcc
Q 038400 439 LKDLEALETLFILGCPKLSSLSE 461 (504)
Q Consensus 439 ~~~l~~L~~L~l~~c~~l~~l~~ 461 (504)
+..+++|+.|++++|+ +...|.
T Consensus 213 l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 213 LANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp GTTCTTCCEEEEEEEE-EECCCE
T ss_pred ccCCCCCCEEEccCCe-eecCCe
Confidence 7888999999998874 555554
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=1.3e-18 Score=166.61 Aligned_cols=198 Identities=16% Similarity=0.167 Sum_probs=135.9
Q ss_pred CCCcccEEEeCCCCcc-ccCccc--cCCCCcCeeeccCCCCccccCcceeccccccCchhhhcc-----ccCCeeeeccc
Q 038400 226 KSQFLRVLNLSESAIE-VCPRKI--GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHL-----TSLRAFALTTK 297 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~-~lp~~~--~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l-----~~L~~L~l~~~ 297 (504)
++++|++|++++|.+. .+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~l~~~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-------------WATRDAWLAELQQWLKPGLKVLSIAQA 159 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-------------CSSSSSHHHHHHTTCCTTCCEEEEESC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-------------CcchhHHHHHHHHhhcCCCcEEEeeCC
Confidence 6788888888888887 577765 788888888888875 55556666666 78888888888
Q ss_pred cccccc-ccCCCCCCccEEeeeCCCCccc--chhhc--CCCCcccEEeeccCCCccc---cCc-cCCCCCCccEEEeccC
Q 038400 298 QKSLQE-SGIRSLGSLRCLTISGCGDLEH--LFEEI--DQLRVLRTLSIVCCPRLIS---LPP-AIKYLSSLETLFLYKC 368 (504)
Q Consensus 298 ~~~~~~-~~~~~l~~L~~L~l~~~~~l~~--~~~~~--~~l~~L~~L~l~~~~~l~~---l~~-~l~~l~~L~~L~l~~~ 368 (504)
.+...+ ..++++++|++|++++|..... +|..+ +.+++|++|++++|. ++. ++. .+..+++|++|++++|
T Consensus 160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCC
Confidence 776655 5678888888888888765443 34455 778888888888875 442 222 2346678888888877
Q ss_pred CCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceE
Q 038400 369 ESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETL 448 (504)
Q Consensus 369 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L 448 (504)
...... . . ..+ ..+++|+.|++++| .++.+|..+. ++|++|
T Consensus 239 ~l~~~~-----------~----------------------~-~~~--~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L 279 (312)
T 1wwl_A 239 SLRDAA-----------G----------------------A-PSC--DWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVL 279 (312)
T ss_dssp CCCSSC-----------C----------------------C-SCC--CCCTTCCEEECTTS-CCSSCCSSCC--SEEEEE
T ss_pred cCCccc-----------c----------------------h-hhh--hhcCCCCEEECCCC-ccChhhhhcc--CCceEE
Confidence 422110 0 0 011 23467777777776 3557776655 778888
Q ss_pred ecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 449 FILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 449 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
++++| .++.+|. +..+++|++|++++++
T Consensus 280 ~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 280 DLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 88776 5666665 7777888888887765
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.3e-17 Score=154.38 Aligned_cols=124 Identities=23% Similarity=0.235 Sum_probs=56.1
Q ss_pred ccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeeccccccccccc-CC
Q 038400 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQESG-IR 307 (504)
Q Consensus 230 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~-~~ 307 (504)
.+.++++++.++.+|..+. .+|+.|++++|. +..+|. .+.++++|++|++++|.+...+.. +.
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~ 82 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-------------LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-------------CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCC-------------CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc
Confidence 3445555555555544332 345555555443 333322 344455555555555444433322 24
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKC 368 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~ 368 (504)
++++|++|++++|......+..++.+++|++|++++|......+..++.+++|++|++++|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 4555555555554322211223445555555555554322222233455555555555554
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=6.6e-18 Score=155.11 Aligned_cols=199 Identities=17% Similarity=0.257 Sum_probs=130.4
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecc-ccccccc-c
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTT-KQKSLQE-S 304 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~-~~~~~~~-~ 304 (504)
..|++|++++|.++.+|. .+..+++|++|++++|..++.+|. ..+..+++|++|++++ |.+...+ .
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-----------~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-----------HSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-----------TTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-----------hHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 367777888887776665 577778888888877632333322 1345677777777776 6655443 3
Q ss_pred cCCCCCCccEEeeeCCCCcccchhhcCCCCccc---EEeeccCCCccccCc-cCCCCCCcc-EEEeccCCCccccccccc
Q 038400 305 GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLR---TLSIVCCPRLISLPP-AIKYLSSLE-TLFLYKCESLDLNINMEM 379 (504)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~---~L~l~~~~~l~~l~~-~l~~l~~L~-~L~l~~~~~l~~~~~~~~ 379 (504)
.+.++++|++|++++|. +..+|. ++.+++|+ +|++++|..++.+|. .+..+++|+ .|++++|.
T Consensus 100 ~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~---------- 167 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG---------- 167 (239)
T ss_dssp SEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC----------
T ss_pred HhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC----------
Confidence 46677777777777754 444554 66666666 777777744555554 466777777 77777653
Q ss_pred cCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCC-CCcceEecccCccCC
Q 038400 380 EGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDL-EALETLFILGCPKLS 457 (504)
Q Consensus 380 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l-~~L~~L~l~~c~~l~ 457 (504)
++.+|...+ ..++|+.|++++|..++.+| ..+..+ ++|+.|+++++ .++
T Consensus 168 --------------------------l~~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~ 218 (239)
T 2xwt_C 168 --------------------------FTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVT 218 (239)
T ss_dssp --------------------------CCEECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCC
T ss_pred --------------------------CcccCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccc
Confidence 223333331 22678888888876566664 456778 88999999886 577
Q ss_pred cCccCCCCCCCcCeEeEeCCCch
Q 038400 458 SLSEDMHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 458 ~l~~~~~~l~~L~~L~l~~c~~l 480 (504)
.+|.. .+++|+.|++.++..|
T Consensus 219 ~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 219 ALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp CCCCT--TCTTCSEEECTTC---
T ss_pred cCChh--HhccCceeeccCccCC
Confidence 77764 6788888888887653
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=1.8e-17 Score=166.59 Aligned_cols=170 Identities=24% Similarity=0.288 Sum_probs=109.5
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCC-CcccEEEeCCCCccccCccccCCCCc
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKS-QFLRVLNLSESAIEVCPRKIGNLKHM 253 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~lp~~~~~l~~L 253 (504)
+..++.+.+..+.... ++. ..++|+.|+++++.... +... ++|++|++++|.++.+| .++++++|
T Consensus 90 ~~~L~~L~l~~n~l~~--lp~---~~~~L~~L~l~~n~l~~--------l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L 155 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE--LPE---LPQSLKSLLVDNNNLKA--------LSDLPPLLEYLGVSNNQLEKLP-ELQNSSFL 155 (454)
T ss_dssp CTTCSEEECCSSCCSS--CCC---CCTTCCEEECCSSCCSC--------CCSCCTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred cCCCCEEEccCCcCCc--ccc---ccCCCcEEECCCCccCc--------ccCCCCCCCEEECcCCCCCCCc-ccCCCCCC
Confidence 4567777777665532 222 24678888887665431 1112 57888888888888877 58888888
Q ss_pred CeeeccCCCCccccCcce--------eccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCccc
Q 038400 254 RYLDLSGNSKIKKLPKSI--------YCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEH 325 (504)
Q Consensus 254 ~~L~l~~~~~~~~lp~~~--------~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 325 (504)
++|++++| .++.+|..+ ..+.+..+| .++.+++|++|++++|.+...+.. .++|++|++++|. +..
T Consensus 156 ~~L~l~~N-~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~-l~~ 229 (454)
T 1jl5_A 156 KIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNI-LEE 229 (454)
T ss_dssp CEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSS
T ss_pred CEEECCCC-cCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCc-CCc
Confidence 88888877 355565432 134566666 577888888888887776654432 2477777777763 446
Q ss_pred chhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 326 LFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 326 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
+| .++.+++|++|++++|. +..+|.. +++|+.|++++|.
T Consensus 230 lp-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNY 268 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSC
T ss_pred cc-ccCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCc
Confidence 66 47777777777777764 4445542 2456666665554
No 66
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=2.9e-17 Score=173.08 Aligned_cols=135 Identities=24% Similarity=0.196 Sum_probs=92.4
Q ss_pred cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL 409 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 409 (504)
+..+++++.++++.|......+..+..+++|+.|++++|....... .......++|+.|+++++ .++.+
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~----------~~~~~~l~~L~~L~Ls~N-~L~~l 509 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL----------PDIFTELRNLTFLDLSQC-QLEQL 509 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE----------CSCCTTCTTCCEEECTTS-CCCEE
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccC----------chhhhhccccCEEECCCC-ccCCc
Confidence 4455566666666655444445556667777777777765433210 122233458999999997 45555
Q ss_pred -hhhhhcCCCCCccEEEeccCCCCCcc-CcCCCCCCCcceEecccCccCCcCccCCCCC-CCcCeEeEeCCC
Q 038400 410 -PQWLLQGSTDTLQNLLIIDCPNFMAL-PRSLKDLEALETLFILGCPKLSSLSEDMHHV-TTLKSLTIGGCP 478 (504)
Q Consensus 410 -~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~c~ 478 (504)
|..+ ..+++|+.|+|++| .++.+ |..+..+++|++|++++|......|..+..+ ++|+.|++++||
T Consensus 510 ~~~~f--~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 510 SPTAF--NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTTT--TTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred ChHHH--cCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 4555 67899999999998 46665 4568899999999999985444556667777 689999998765
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.3e-18 Score=176.81 Aligned_cols=238 Identities=11% Similarity=0.074 Sum_probs=185.6
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcC
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMR 254 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~ 254 (504)
...++.+++.++.+.. ..+..+..+++|++|+++++...... + +..+++|++|++++|.++.+|.. ++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~---~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETL---D--LESLSTLRTLDLNNNYVQELLVG----PSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEE---E--CTTCTTCCEEECCSSEEEEEEEC----TTCC
T ss_pred CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCc---c--cccCCCCCEEEecCCcCCCCCCC----CCcC
Confidence 3468999999887732 33567889999999999988764221 1 78899999999999999877643 8999
Q ss_pred eeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchhhcC-C
Q 038400 255 YLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFEEID-Q 332 (504)
Q Consensus 255 ~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~ 332 (504)
+|++++|. +..+|.. .+++|++|++++|.+... +..++.+++|+.|++++|......|..+. .
T Consensus 103 ~L~L~~N~-------------l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 103 TLHAANNN-------------ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (487)
T ss_dssp EEECCSSC-------------CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred EEECcCCc-------------CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence 99999985 4444332 468899999999987765 45688999999999999876666777776 7
Q ss_pred CCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhh
Q 038400 333 LRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQW 412 (504)
Q Consensus 333 l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 412 (504)
+++|++|++++|. +..+|. ...+++|+.|++++|..-..+. .....++|+.|+++++ .+..+|.+
T Consensus 168 l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~------------~~~~l~~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 168 SDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKLAFMGP------------EFQSAAGVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp TTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSCCCEECG------------GGGGGTTCSEEECTTS-CCCEECTT
T ss_pred CCcccEEecCCCc-cccccc-cccCCCCCEEECCCCCCCCCCH------------hHcCCCCccEEEecCC-cCcccchh
Confidence 9999999999986 666655 4469999999999986443221 1223458999999995 57778887
Q ss_pred hhcCCCCCccEEEeccCCCC-CccCcCCCCCCCcceEecccCc
Q 038400 413 LLQGSTDTLQNLLIIDCPNF-MALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 413 ~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
+ ..+++|+.|++++|+.. ..+|.++..++.|+.+.+..+.
T Consensus 233 l--~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 233 L--RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp C--CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h--ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccc
Confidence 7 77899999999998654 3677788899999999887443
No 68
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=2.5e-18 Score=166.47 Aligned_cols=259 Identities=17% Similarity=0.209 Sum_probs=178.9
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCC--CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKS--QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
..++.++++++... +..+..+ ..+++|+++++.+...+..+..+++|++|++++|. +. -..
T Consensus 47 ~~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~----------~~~ 109 (336)
T 2ast_B 47 SLWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IE----------VST 109 (336)
T ss_dssp TTSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-EC----------HHH
T ss_pred hhheeeccccccCC------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cC----------HHH
Confidence 44677777755433 2234444 78999999999988777778889999999999874 11 122
Q ss_pred CchhhhccccCCeeeecccccc-cccccCCCCCCccEEeeeCCCCcc--cchhhcCCCCcccEEeeccCCCccc--cCcc
Q 038400 279 LPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTISGCGDLE--HLFEEIDQLRVLRTLSIVCCPRLIS--LPPA 353 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~ 353 (504)
+|..+..+++|++|++++|.+. ..+..+.++++|++|++++|..+. .++..++.+++|++|++++|..++. ++..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 6677888999999999988765 344567889999999999986665 3677788899999999999844553 6677
Q ss_pred CCCCC-CccEEEeccCC-CccccccccccCCCCCCCCCCCCCccceEEEccCCCcc-cchhhhhcCCCCCccEEEeccCC
Q 038400 354 IKYLS-SLETLFLYKCE-SLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLL-ELPQWLLQGSTDTLQNLLIIDCP 430 (504)
Q Consensus 354 l~~l~-~L~~L~l~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~ 430 (504)
+..++ +|++|++++|. .+.... ........++|+.|++++|..++ ..+..+ ..+++|+.|++++|.
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~---------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSD---------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHH---------HHHHHHHCTTCSEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTCT
T ss_pred HHhcccCCCEEEeCCCcccCCHHH---------HHHHHhhCCCCCEEeCCCCCcCCHHHHHHH--hCCCCCCEeeCCCCC
Confidence 78888 99999999985 232100 00011124589999999987554 344455 567999999999997
Q ss_pred CCCc-cCcCCCCCCCcceEecccCccCCcCcc-CCCCC-CCcCeEeEeCCCchhhhcCCCCCCCCC
Q 038400 431 NFMA-LPRSLKDLEALETLFILGCPKLSSLSE-DMHHV-TTLKSLTIGGCPALSERCKRPTGEDWP 493 (504)
Q Consensus 431 ~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~ 493 (504)
.+.. ....+..+++|++|++++| ++. .+..+ .+|+.|+++ |..++...+...+..|.
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~~~~~~~~~~~ 318 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN-CSHFTTIARPTIGNKKN 318 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES-CCCSCCTTCSSCSSTTC
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe-cccCccccCCccccccc
Confidence 4432 1224778999999999998 222 22223 336667775 44566554444444333
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=4.4e-17 Score=155.46 Aligned_cols=190 Identities=17% Similarity=0.252 Sum_probs=123.1
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+++|++|+++++.+..+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+...+ .
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-------------i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~ 102 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-------------ITDLAP-LKNLTKITELELSGNPLKNVS-A 102 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-------------CCCCGG-GTTCCSCCEEECCSCCCSCCG-G
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-------------CCCChh-HccCCCCCEEEccCCcCCCch-h
Confidence 3566777777777777665 46677777777777764 555555 667777777777777665553 5
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSN 385 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 385 (504)
+..+++|++|++++|. +..++ .++.+++|++|++++|. +..++. +..+++|+.|++++|..
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l--------------- 163 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVT-PLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQV--------------- 163 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCC---------------
T ss_pred hcCCCCCCEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcC---------------
Confidence 6777777777777754 44444 36777777777777764 444544 56667777777766531
Q ss_pred CCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCC
Q 038400 386 HDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHH 465 (504)
Q Consensus 386 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 465 (504)
..++. + ..+++|+.|++++| .++.++. +..+++|++|++++| .++.++. +..
T Consensus 164 ---------------------~~~~~-l--~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~-l~~ 215 (308)
T 1h6u_A 164 ---------------------SDLTP-L--ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP-LAN 215 (308)
T ss_dssp ---------------------CCCGG-G--TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG-GTT
T ss_pred ---------------------CCChh-h--cCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-ccCcccc-ccC
Confidence 11222 2 45567777777766 3455554 666777777777776 4555553 567
Q ss_pred CCCcCeEeEeCCC
Q 038400 466 VTTLKSLTIGGCP 478 (504)
Q Consensus 466 l~~L~~L~l~~c~ 478 (504)
+++|+.|++++|+
T Consensus 216 l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 216 TSNLFIVTLTNQT 228 (308)
T ss_dssp CTTCCEEEEEEEE
T ss_pred CCCCCEEEccCCe
Confidence 7777777777665
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=6e-17 Score=151.73 Aligned_cols=204 Identities=25% Similarity=0.311 Sum_probs=104.0
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
.+++|+.|.+.++...... .+..+++|++|++++|.+..++ .+..+++|++|++++|. +..
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-----~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-------------l~~ 99 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-----GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-------------LQS 99 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-----TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-------------CCC
T ss_pred cccceeeeeeCCCCccccc-----ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-------------cCc
Confidence 3445555555544332111 1444555555555555555432 45555555555555543 333
Q ss_pred Cchh-hhccccCCeeeeccccccccccc-CCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccC-ccC
Q 038400 279 LPKD-IRHLTSLRAFALTTKQKSLQESG-IRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLP-PAI 354 (504)
Q Consensus 279 lp~~-i~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~l 354 (504)
+|.. +..+++|++|++++|.+...++. +..+++|++|++++|. +..++ ..++.+++|++|++++|. ++.++ ..+
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 177 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVF 177 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCC-cCccCHHHh
Confidence 3322 34555555555555554433322 4455555555555543 22222 223455555555555553 22232 223
Q ss_pred CCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhh-hhcCCCCCccEEEeccCCCCC
Q 038400 355 KYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQW-LLQGSTDTLQNLLIIDCPNFM 433 (504)
Q Consensus 355 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~l~ 433 (504)
+.+++|+.|++++|. +..++.. + ..+++|+.|++++|+.
T Consensus 178 ~~l~~L~~L~L~~N~------------------------------------l~~~~~~~~--~~l~~L~~L~l~~N~~-- 217 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQ------------------------------------LKSVPDGVF--DRLTSLQYIWLHDNPW-- 217 (272)
T ss_dssp TTCTTCCEEECCSSC------------------------------------CSCCCTTTT--TTCTTCCEEECCSSCB--
T ss_pred cCCccCCEEECCCCc------------------------------------CCccCHHHH--hCCcCCCEEEccCCCc--
Confidence 445555555555442 2233222 2 4567888888887742
Q ss_pred ccCcCCCCCCCcceEecccCccCCcCccCCCCCCC
Q 038400 434 ALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTT 468 (504)
Q Consensus 434 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~ 468 (504)
.+.+++|+.|++..+.....+|..++.++.
T Consensus 218 -----~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 218 -----DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -----CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -----cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 245667888888877666677776665544
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=1e-16 Score=150.57 Aligned_cols=199 Identities=18% Similarity=0.149 Sum_probs=133.3
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeeccccccccc-c
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQE-S 304 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~-~ 304 (504)
+.|++|++++|.++.++. .+.++++|++|++++|. +..++. .+..+++|++|++++|.+...+ .
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-------------IQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-------------CCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-------------CCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 468999999999987765 78889999999999885 444443 5678889999999988776554 5
Q ss_pred cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCcc-ccCccCCCCCCccEEEeccCCCccccccccccCCC
Q 038400 305 GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLI-SLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEG 383 (504)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 383 (504)
.+.++++|++|++++|......+..++.+++|++|++++|.... .+|..++.+++|++|++++|........
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~------- 167 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT------- 167 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-------
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-------
Confidence 68889999999998875444333468888999999999876333 3678888889999999988753322100
Q ss_pred CCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCcc-EEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccC
Q 038400 384 SNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQ-NLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSED 462 (504)
Q Consensus 384 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 462 (504)
.+. .+ ..++.|. .|+++++ .++.++.......+|+.|++++|. ++.+|..
T Consensus 168 ------------------------~~~-~l--~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~ 218 (276)
T 2z62_A 168 ------------------------DLR-VL--HQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPDG 218 (276)
T ss_dssp ------------------------GGH-HH--HTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCTT
T ss_pred ------------------------Hhh-hh--hhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCHh
Confidence 000 00 1122222 5666555 344554444444567777776663 5555543
Q ss_pred -CCCCCCcCeEeEe
Q 038400 463 -MHHVTTLKSLTIG 475 (504)
Q Consensus 463 -~~~l~~L~~L~l~ 475 (504)
+..+++|+.|+++
T Consensus 219 ~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 219 IFDRLTSLQKIWLH 232 (276)
T ss_dssp TTTTCCSCCEEECC
T ss_pred HhcccccccEEEcc
Confidence 3566667777766
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1e-16 Score=151.47 Aligned_cols=152 Identities=19% Similarity=0.151 Sum_probs=110.5
Q ss_pred hcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccc
Q 038400 197 LSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE 275 (504)
Q Consensus 197 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~ 275 (504)
+.++++++.+.+.++..... + . .-.+.+++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i---p-~--~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~------------- 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL---P-P--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE------------- 66 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC---C-S--CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-------------
T ss_pred ccccCCccEEECCCCCCCcC---C-C--CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-------------
Confidence 34567788888876554311 1 1 1136788899999988865 4678888899999998875
Q ss_pred cccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cC
Q 038400 276 LEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AI 354 (504)
Q Consensus 276 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l 354 (504)
+..+|.. ..+++|++|++++|.+...+..+..+++|++|++++|......+..++.+++|++|++++|. ++.+|. .+
T Consensus 67 l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 144 (290)
T 1p9a_G 67 LTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLL 144 (290)
T ss_dssp CCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTT
T ss_pred cCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhc
Confidence 4444443 57888999999988888777778888899999998865433333668888999999998875 445544 46
Q ss_pred CCCCCccEEEeccCC
Q 038400 355 KYLSSLETLFLYKCE 369 (504)
Q Consensus 355 ~~l~~L~~L~l~~~~ 369 (504)
..+++|+.|++++|.
T Consensus 145 ~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 145 TPTPKLEKLSLANNN 159 (290)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred ccccCCCEEECCCCc
Confidence 778888888888874
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=2.5e-18 Score=164.54 Aligned_cols=198 Identities=15% Similarity=0.180 Sum_probs=148.1
Q ss_pred CCCCeeEEeeecCCcccchHHHHHH-hcCCCcccEEEeCCCCccccCccccCC-----CCcCeeeccCCCCccccCccee
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESC-ISKSQFLRVLNLSESAIEVCPRKIGNL-----KHMRYLDLSGNSKIKKLPKSIY 272 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~~~~lp~~~~ 272 (504)
++++|+.|+++++... ...+... +..+++|++|++++|.+...|..++.+ ++|++|++++|.
T Consensus 93 ~l~~L~~L~L~~n~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~---------- 160 (312)
T 1wwl_A 93 GISGLQELTLENLEVT--GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH---------- 160 (312)
T ss_dssp TTSCCCEEEEEEEBCB--SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS----------
T ss_pred CcCCccEEEccCCccc--chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC----------
Confidence 6899999999977644 1111111 378999999999999999888888777 899999999986
Q ss_pred ccccccCc-hhhhccccCCeeeecccccccc---cccC--CCCCCccEEeeeCCCCcc---cch-hhcCCCCcccEEeec
Q 038400 273 CLELEELP-KDIRHLTSLRAFALTTKQKSLQ---ESGI--RSLGSLRCLTISGCGDLE---HLF-EEIDQLRVLRTLSIV 342 (504)
Q Consensus 273 ~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~---~~~~--~~l~~L~~L~l~~~~~l~---~~~-~~~~~l~~L~~L~l~ 342 (504)
+..+| ..++.+++|++|++++|..... +..+ .++++|++|++++|. +. .++ ..+..+++|++|+++
T Consensus 161 ---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 161 ---SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp ---CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECT
T ss_pred ---CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECC
Confidence 55555 5688999999999999975432 2334 899999999999975 44 333 234578999999999
Q ss_pred cCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCc
Q 038400 343 CCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTL 421 (504)
Q Consensus 343 ~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 421 (504)
+|......| ..+..+++|++|++++|.. +.+|.++ . ++|
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l------------------------------------~~ip~~~--~--~~L 276 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGL------------------------------------KQVPKGL--P--AKL 276 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCC------------------------------------SSCCSSC--C--SEE
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCcc------------------------------------Chhhhhc--c--CCc
Confidence 986444343 4566788999999998742 2344443 1 678
Q ss_pred cEEEeccCCCCCccCcCCCCCCCcceEecccCc
Q 038400 422 QNLLIIDCPNFMALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 422 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
+.|++++| .++.+|. +..+++|++|++++++
T Consensus 277 ~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 277 SVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred eEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 88888877 4666676 8888889999988874
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=3.8e-17 Score=164.28 Aligned_cols=257 Identities=17% Similarity=0.146 Sum_probs=157.4
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCc-------------ccEEEeCCCCccc
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQF-------------LRVLNLSESAIEV 242 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~ 242 (504)
..++.+.+..+.+ ..++..+.++++|+.|.++++... ...+..++++.+ +++|+++++.++.
T Consensus 11 ~~L~~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~~~---~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 11 TFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWE---RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHH---HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred ccchhhhcccCch--hhCChhHhcccchhhhhccCCccc---ccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 3556677766665 456777888888888888754321 112223444443 4888888888877
Q ss_pred cCccccCCCCcCeeeccCCCCccccCccee--------ccccccCchhhhccccCCeeeecccccccccccCCCCCCccE
Q 038400 243 CPRKIGNLKHMRYLDLSGNSKIKKLPKSIY--------CLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRC 314 (504)
Q Consensus 243 lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~--------~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 314 (504)
+|.. .++|++|++++|. ++.+|..+. .+.+..+|.. .++|++|++++|.+...+ .++++++|++
T Consensus 86 lp~~---~~~L~~L~l~~n~-l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CCSC---CTTCSEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCC---cCCCCEEEccCCc-CCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 7763 3678888888763 444554321 2223333321 157888888888777665 5888888888
Q ss_pred EeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCc
Q 038400 315 LTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPH 394 (504)
Q Consensus 315 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 394 (504)
|++++|. +..+|.. ..+|++|++++|. ++.+| .++.+++|+.|++++|....+. ....+
T Consensus 158 L~l~~N~-l~~lp~~---~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~---------------~~~~~ 216 (454)
T 1jl5_A 158 IDVDNNS-LKKLPDL---PPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLP---------------DLPLS 216 (454)
T ss_dssp EECCSSC-CSCCCCC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCC---------------CCCTT
T ss_pred EECCCCc-CcccCCC---cccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCC---------------CCcCc
Confidence 8888864 4456643 3588888888874 55677 5788888899988887532211 11248
Q ss_pred cceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeE
Q 038400 395 LRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTI 474 (504)
Q Consensus 395 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 474 (504)
|+.|+++++ .+..+|. + ..+++|+.|++++| .++.+|.. +++|++|++++| .++.+|.. +++|+.|++
T Consensus 217 L~~L~l~~n-~l~~lp~-~--~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l 284 (454)
T 1jl5_A 217 LESIVAGNN-ILEELPE-L--QNLPFLTTIYADNN-LLKTLPDL---PPSLEALNVRDN-YLTDLPEL---PQSLTFLDV 284 (454)
T ss_dssp CCEEECCSS-CCSSCCC-C--TTCTTCCEEECCSS-CCSSCCSC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEEC
T ss_pred ccEEECcCC-cCCcccc-c--CCCCCCCEEECCCC-cCCccccc---ccccCEEECCCC-cccccCcc---cCcCCEEEC
Confidence 999999986 5667774 4 57899999999987 46667653 478999999887 46667653 467788888
Q ss_pred eCCC
Q 038400 475 GGCP 478 (504)
Q Consensus 475 ~~c~ 478 (504)
++|.
T Consensus 285 s~N~ 288 (454)
T 1jl5_A 285 SENI 288 (454)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 7764
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=6.1e-17 Score=154.79 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=151.4
Q ss_pred CCCeeEEeeecCCcccchHHHHH--HhcCCCcccEEEeCCCCcc-ccCccc--cCCCCcCeeeccCCCCccccCcceecc
Q 038400 200 LGRVRTIVFSTDDEKISQSFVES--CISKSQFLRVLNLSESAIE-VCPRKI--GNLKHMRYLDLSGNSKIKKLPKSIYCL 274 (504)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~lp~~~--~~l~~L~~L~l~~~~~~~~lp~~~~~~ 274 (504)
...++.+.+...... ...... .+..++.|++|++++|.+. ..|..+ ..+++|++|++++|......|
T Consensus 63 ~~~l~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~------ 134 (310)
T 4glp_A 63 ALRVRRLTVGAAQVP--AQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS------ 134 (310)
T ss_dssp SCCCCEEEECSCCCB--HHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS------
T ss_pred hcceeEEEEeCCcCC--HHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh------
Confidence 345677777655432 222211 1223466999999999988 566666 899999999999986221111
Q ss_pred ccccCc-hhhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCccc--ch--hhcCCCCcccEEeeccCCCcc
Q 038400 275 ELEELP-KDIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDLEH--LF--EEIDQLRVLRTLSIVCCPRLI 348 (504)
Q Consensus 275 ~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~--~~--~~~~~l~~L~~L~l~~~~~l~ 348 (504)
.++ ..+..+++|++|++++|.+...+ ..++.+++|++|++++|..... ++ ..++.+++|++|++++|. ++
T Consensus 135 ---~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~ 210 (310)
T 4glp_A 135 ---WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-ME 210 (310)
T ss_dssp ---SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CC
T ss_pred ---hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CC
Confidence 111 23457889999999988876554 5688899999999999764432 22 223688999999999985 55
Q ss_pred ccCc----cCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhh-cCCCCCccE
Q 038400 349 SLPP----AIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLL-QGSTDTLQN 423 (504)
Q Consensus 349 ~l~~----~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~L~~ 423 (504)
.++. .++.+++|++|++++|...... |..+. ...+++|+.
T Consensus 211 ~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-----------------------------------p~~~~~~~~~~~L~~ 255 (310)
T 4glp_A 211 TPTGVCAALAAAGVQPHSLDLSHNSLRATV-----------------------------------NPSAPRCMWSSALNS 255 (310)
T ss_dssp CHHHHHHHHHHHTCCCSSEECTTSCCCCCC-----------------------------------CSCCSSCCCCTTCCC
T ss_pred chHHHHHHHHhcCCCCCEEECCCCCCCccc-----------------------------------hhhHHhccCcCcCCE
Confidence 4444 2466788999999888533210 11110 012367888
Q ss_pred EEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 424 LLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 424 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
|++++| .++.+|..+. ++|++|++++| .++.+|. +..+++|+.|++++++
T Consensus 256 L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 256 LNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp EECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred EECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 888776 4567776654 78888888887 5666654 5677888888888875
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=6.9e-17 Score=151.72 Aligned_cols=199 Identities=18% Similarity=0.169 Sum_probs=147.6
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccC
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l 279 (504)
+++++|+++++.... .....+.++++|++|++++|.+..++. .+..+++|++|++++|. +..+
T Consensus 28 ~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~ 91 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-------------IQSL 91 (276)
T ss_dssp TTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-------------CCEE
T ss_pred CCccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-------------cCcc
Confidence 479999999877552 223357889999999999999997764 78999999999999986 4444
Q ss_pred c-hhhhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcc-cchhhcCCCCcccEEeeccCCCccccCccCCC
Q 038400 280 P-KDIRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLE-HLFEEIDQLRVLRTLSIVCCPRLISLPPAIKY 356 (504)
Q Consensus 280 p-~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~ 356 (504)
+ ..+.++++|++|++++|.+...+. .+.++++|++|++++|.... .+|..++.+++|++|++++|......+..+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 4 457889999999999988776554 68999999999999976443 36889999999999999998643333445665
Q ss_pred CCCcc----EEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCC
Q 038400 357 LSSLE----TLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNF 432 (504)
Q Consensus 357 l~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 432 (504)
+++|+ +|++++|..- .++... ....+|+.|++++|. +
T Consensus 172 l~~L~~l~l~L~ls~n~l~------------------------------------~~~~~~--~~~~~L~~L~L~~n~-l 212 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMN------------------------------------FIQPGA--FKEIRLKELALDTNQ-L 212 (276)
T ss_dssp HHTCTTCCEEEECCSSCCC------------------------------------EECTTS--SCSCCEEEEECCSSC-C
T ss_pred hhhccccceeeecCCCccc------------------------------------ccCccc--cCCCcccEEECCCCc-e
Confidence 66666 7777776422 222222 122467777777764 5
Q ss_pred CccCcC-CCCCCCcceEecccCc
Q 038400 433 MALPRS-LKDLEALETLFILGCP 454 (504)
Q Consensus 433 ~~l~~~-~~~l~~L~~L~l~~c~ 454 (504)
+.+|.. +..+++|+.|++++++
T Consensus 213 ~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 213 KSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SCCCTTTTTTCCSCCEEECCSSC
T ss_pred eecCHhHhcccccccEEEccCCc
Confidence 555543 5778888888888764
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=3.1e-16 Score=165.15 Aligned_cols=132 Identities=15% Similarity=0.174 Sum_probs=106.8
Q ss_pred CCCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCC
Q 038400 173 SIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLK 251 (504)
Q Consensus 173 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~ 251 (504)
..|..++.+++..+.+. ...+..+.++++|++|+++++.+. .+.+..|.++++|++|+|++|.++.+|. .+.++.
T Consensus 49 ~lp~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 45678899999988773 233457889999999999987655 2334568899999999999999998875 579999
Q ss_pred CcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeeccccccc--ccccCCCCCCccEEeeeCCC
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSL--QESGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~ 321 (504)
+|++|++++|. +..+|. .++++++|++|++++|.+.. .+..++.+++|++|++++|.
T Consensus 125 ~L~~L~Ls~N~-------------l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 125 SLQKLVAVETN-------------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TCCEEECTTSC-------------CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-------------CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 99999999885 666654 37899999999999988754 35667889999999998865
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=3.3e-18 Score=168.97 Aligned_cols=247 Identities=17% Similarity=0.127 Sum_probs=147.4
Q ss_pred hhhhhcCCCCeeEEeeecCCcccc-hHHHHHHhcCCCcccEEEeCCCCcc----ccCccc-------cCCCCcCeeeccC
Q 038400 193 FSSLLSDLGRVRTIVFSTDDEKIS-QSFVESCISKSQFLRVLNLSESAIE----VCPRKI-------GNLKHMRYLDLSG 260 (504)
Q Consensus 193 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~----~lp~~~-------~~l~~L~~L~l~~ 260 (504)
+...+..+++|+.|.++++.+... ...+...+..+++|++|+|++|.+. .+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 345566778888888887654411 1223344677888888888887544 234333 6788888888888
Q ss_pred CCCccccCcceeccccccCchhhhccccCCeeeecccccccc-----cccCCCC---------CCccEEeeeCCCCc-cc
Q 038400 261 NSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ-----ESGIRSL---------GSLRCLTISGCGDL-EH 325 (504)
Q Consensus 261 ~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-----~~~~~~l---------~~L~~L~l~~~~~l-~~ 325 (504)
|. ++ ......+|..+..+++|++|++++|.+... +..+..+ ++|++|++++|... ..
T Consensus 104 n~-l~-------~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 104 NA-FG-------PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CC-CC-------TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred Cc-CC-------HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 75 11 011223677778888888888888776422 1223333 78888888887543 23
Q ss_pred ch---hhcCCCCcccEEeeccCCCcc-----ccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccce
Q 038400 326 LF---EEIDQLRVLRTLSIVCCPRLI-----SLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRR 397 (504)
Q Consensus 326 ~~---~~~~~l~~L~~L~l~~~~~l~-----~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 397 (504)
++ ..+..+++|++|++++|.... ..+..+..+++|++|++++|..-..... . ........++|+.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~------l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-A------LAIALKSWPNLRE 248 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-H------HHHHGGGCTTCCE
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH-H------HHHHHccCCCcCE
Confidence 33 466678888888888875321 2333677788888888888753110000 0 0000112335667
Q ss_pred EEEccCCCccc-----chhhhhcCCCCCccEEEeccCCCCC----ccCcCC-CCCCCcceEecccCcc
Q 038400 398 VVIGEITQLLE-----LPQWLLQGSTDTLQNLLIIDCPNFM----ALPRSL-KDLEALETLFILGCPK 455 (504)
Q Consensus 398 L~l~~~~~l~~-----~~~~~~~~~~~~L~~L~l~~~~~l~----~l~~~~-~~l~~L~~L~l~~c~~ 455 (504)
|+++++. +.. ++.++....+++|+.|++++|..-. .+|..+ .++++|++|++++|+.
T Consensus 249 L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 249 LGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp EECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred EECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 7776653 322 2344322346777777777764322 256555 4567777777777743
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=4.5e-16 Score=161.47 Aligned_cols=232 Identities=21% Similarity=0.191 Sum_probs=179.1
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCee
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYL 256 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 256 (504)
.++.+.+..+.+. .++..+. ++|+.|.++++.+.... ..+++|++|++++|.++.+|. .+++|++|
T Consensus 41 ~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~~lp-------~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 41 GNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLTSLP-------ALPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp CCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCSCCC-------CCCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCCCCC-------CcCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 3577787777663 3343333 78999999987755211 157899999999999998887 77899999
Q ss_pred eccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcc
Q 038400 257 DLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVL 336 (504)
Q Consensus 257 ~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L 336 (504)
++++|. +..+|. .+++|+.|++++|.+...+.. +++|++|++++| .+..+|. .+++|
T Consensus 107 ~Ls~N~-------------l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~---~~~~L 163 (622)
T 3g06_A 107 SIFSNP-------------LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA---LPSEL 163 (622)
T ss_dssp EECSCC-------------CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTC
T ss_pred ECcCCc-------------CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC---ccCCC
Confidence 999885 566665 568899999999988777653 589999999997 4555664 45789
Q ss_pred cEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcC
Q 038400 337 RTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQG 416 (504)
Q Consensus 337 ~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 416 (504)
+.|++++|. ++.+| ..+++|+.|++++|..-.+. ...++|+.|.+.++ .+..+|.
T Consensus 164 ~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~~l~---------------~~~~~L~~L~L~~N-~l~~l~~----- 218 (622)
T 3g06_A 164 CKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLASLP---------------TLPSELYKLWAYNN-RLTSLPA----- 218 (622)
T ss_dssp CEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCC---------------CCCTTCCEEECCSS-CCSSCCC-----
T ss_pred CEEECCCCC-CCCCc---ccCCCCcEEECCCCCCCCCC---------------CccchhhEEECcCC-cccccCC-----
Confidence 999999975 67777 45789999999998633211 12358999999985 5666664
Q ss_pred CCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 417 STDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 417 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
.+++|+.|++++| .++.+| ..+++|+.|++++| .++.+|. .+++|+.|++++|.
T Consensus 219 ~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 219 LPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred CCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC
Confidence 3489999999988 677788 56689999999998 6888887 67999999999984
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.4e-16 Score=146.26 Aligned_cols=198 Identities=14% Similarity=0.137 Sum_probs=147.7
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCC-ccccCc-cccCCCCcCeeeccC-CCCccccCcceeccccc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESA-IEVCPR-KIGNLKHMRYLDLSG-NSKIKKLPKSIYCLELE 277 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~lp~-~~~~l~~L~~L~l~~-~~~~~~lp~~~~~~~l~ 277 (504)
.+++.|.++++... ...+..+..+++|++|++++|. ++.+|. .+..+++|++|++++ |. +.
T Consensus 31 ~~l~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-------------l~ 94 (239)
T 2xwt_C 31 PSTQTLKLIETHLR---TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-------------LT 94 (239)
T ss_dssp TTCCEEEEESCCCS---EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-------------CC
T ss_pred CcccEEEEeCCcce---EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-------------ee
Confidence 47899999877655 2233457789999999999997 887775 788999999999998 54 45
Q ss_pred cCch-hhhccccCCeeeecccccccccccCCCCCCcc---EEeeeCCCCcccchh-hcCCCCccc-EEeeccCCCccccC
Q 038400 278 ELPK-DIRHLTSLRAFALTTKQKSLQESGIRSLGSLR---CLTISGCGDLEHLFE-EIDQLRVLR-TLSIVCCPRLISLP 351 (504)
Q Consensus 278 ~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~---~L~l~~~~~l~~~~~-~~~~l~~L~-~L~l~~~~~l~~l~ 351 (504)
.+|. .+..+++|++|++++|.+...+. +..+++|+ +|++++|..+..+|. .++.+++|+ .|++++|. ++.+|
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~ 172 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQ 172 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEEC
T ss_pred EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccC
Confidence 5543 46789999999999998877765 88888888 999999856777765 588999999 99999985 56777
Q ss_pred ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCC-CCccEEEeccCC
Q 038400 352 PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGST-DTLQNLLIIDCP 430 (504)
Q Consensus 352 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~ 430 (504)
......++|+.|++++|..++ .+|...+ ..+ ++|+.|+++++
T Consensus 173 ~~~~~~~~L~~L~L~~n~~l~-----------------------------------~i~~~~~-~~l~~~L~~L~l~~N- 215 (239)
T 2xwt_C 173 GYAFNGTKLDAVYLNKNKYLT-----------------------------------VIDKDAF-GGVYSGPSLLDVSQT- 215 (239)
T ss_dssp TTTTTTCEEEEEECTTCTTCC-----------------------------------EECTTTT-TTCSBCCSEEECTTC-
T ss_pred HhhcCCCCCCEEEcCCCCCcc-----------------------------------cCCHHHh-hccccCCcEEECCCC-
Confidence 655444788888888774332 2222111 345 77888888876
Q ss_pred CCCccCcCCCCCCCcceEecccCcc
Q 038400 431 NFMALPRSLKDLEALETLFILGCPK 455 (504)
Q Consensus 431 ~l~~l~~~~~~l~~L~~L~l~~c~~ 455 (504)
.++.+|.. .+++|+.|.+.++..
T Consensus 216 ~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 216 SVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CCCCCCCT--TCTTCSEEECTTC--
T ss_pred ccccCChh--HhccCceeeccCccC
Confidence 46677754 678888888887653
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=8.2e-16 Score=143.80 Aligned_cols=194 Identities=23% Similarity=0.267 Sum_probs=138.0
Q ss_pred CeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccCc
Q 038400 202 RVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP 280 (504)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp 280 (504)
..++++++++..... +. .-...|+.|++++|.+..+|. .+..+++|++|++++|. +..+|
T Consensus 17 ~~~~l~~~~~~l~~i----p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~i~ 77 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI----PS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-------------LQTLP 77 (270)
T ss_dssp TTTEEECTTSCCSSC----CS--CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-------------CSCCC
T ss_pred CCCEEEccCCCCCcc----CC--CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-------------cCeeC
Confidence 356677765543311 11 112578999999999987775 78899999999999875 56666
Q ss_pred hhh-hccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCC
Q 038400 281 KDI-RHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYL 357 (504)
Q Consensus 281 ~~i-~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l 357 (504)
..+ ..+++|++|++++|.+...+. .+.++++|++|++++|......+..++.+++|++|++++|. ++.+|. .+..+
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 156 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKL 156 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCC
Confidence 554 678999999999888776554 46889999999999976544445567899999999999985 555654 47889
Q ss_pred CCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchh-hhhcCCCCCccEEEeccCCCCCccC
Q 038400 358 SSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQ-WLLQGSTDTLQNLLIIDCPNFMALP 436 (504)
Q Consensus 358 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l~ 436 (504)
++|+.|++++|.... ++. .+ ..+++|+.|++++| .++.+|
T Consensus 157 ~~L~~L~L~~n~l~~------------------------------------~~~~~~--~~l~~L~~L~L~~N-~l~~~~ 197 (270)
T 2o6q_A 157 TSLKELRLYNNQLKR------------------------------------VPEGAF--DKLTELKTLKLDNN-QLKRVP 197 (270)
T ss_dssp TTCCEEECCSSCCSC------------------------------------CCTTTT--TTCTTCCEEECCSS-CCSCCC
T ss_pred cccceeEecCCcCcE------------------------------------eChhHh--ccCCCcCEEECCCC-cCCcCC
Confidence 999999998874322 111 12 34567777777776 445554
Q ss_pred c-CCCCCCCcceEecccCc
Q 038400 437 R-SLKDLEALETLFILGCP 454 (504)
Q Consensus 437 ~-~~~~l~~L~~L~l~~c~ 454 (504)
. .+..+++|+.|++++|+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHhccccCCCEEEecCCC
Confidence 4 36667777777777764
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=9.8e-16 Score=148.95 Aligned_cols=220 Identities=17% Similarity=0.170 Sum_probs=167.3
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCee-eecccccccc-cc
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAF-ALTTKQKSLQ-ES 304 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L-~l~~~~~~~~-~~ 304 (504)
.+++.|+|++|.++.+|. .+.++++|++|++++|...+.+|.. .+.++++|+++ .+..|.+... +.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-----------~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-----------VFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT-----------SBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh-----------HhhcchhhhhhhcccCCcccccCch
Confidence 679999999999999986 5899999999999998633333322 24677787764 4455665554 55
Q ss_pred cCCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCc-cCCCCC-CccEEEeccCCCccccccccccC
Q 038400 305 GIRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPP-AIKYLS-SLETLFLYKCESLDLNINMEMEG 381 (504)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~-~L~~L~l~~~~~l~~~~~~~~~~ 381 (504)
.+..+++|++|++++|.. ..+| ..+....++..|++.++..+..++. .+..+. .++.|++++|..-++
T Consensus 99 ~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-------- 169 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-------- 169 (350)
T ss_dssp SBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--------
T ss_pred hhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC--------
Confidence 689999999999999754 4444 3455667788999988777887765 345554 688999998864433
Q ss_pred CCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc
Q 038400 382 EGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE 461 (504)
Q Consensus 382 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 461 (504)
........+|+.+.+.++..++.+|...+ ..+++|+.|+++++ .++.+|. ..+.+|+.|.+.++..++.+|.
T Consensus 170 ----~~~~f~~~~L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 170 ----HNSAFNGTQLDELNLSDNNNLEELPNDVF-HGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp ----CTTSSTTEEEEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCC
T ss_pred ----ChhhccccchhHHhhccCCcccCCCHHHh-ccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCC
Confidence 22223345899999998889999986542 57899999999998 6888886 4478899999999999999994
Q ss_pred CCCCCCCcCeEeEeC
Q 038400 462 DMHHVTTLKSLTIGG 476 (504)
Q Consensus 462 ~~~~l~~L~~L~l~~ 476 (504)
+..+++|+.+++.+
T Consensus 242 -l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 -LEKLVALMEASLTY 255 (350)
T ss_dssp -TTTCCSCCEEECSC
T ss_pred -chhCcChhhCcCCC
Confidence 78899999999864
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=3.5e-16 Score=146.51 Aligned_cols=190 Identities=23% Similarity=0.273 Sum_probs=125.4
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+++|+.|+++++.+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++|.+...++.
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-------------l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~ 103 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-------------LHDIS-ALKELTNLTYLILTGNQLQSLPNG 103 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-------------CCCCG-GGTTCTTCCEEECTTSCCCCCCTT
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-------------CCCch-hhcCCCCCCEEECCCCccCccChh
Confidence 4577888888888777654 46778888888888775 44443 566777788888877776655433
Q ss_pred -CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCCCccccccccccCCC
Q 038400 306 -IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCESLDLNINMEMEGEG 383 (504)
Q Consensus 306 -~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 383 (504)
+.++++|++|++++|......+..++.+++|++|++++|. ++.++. .++.+++|+.|++++|.
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-------------- 168 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-------------- 168 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC--------------
T ss_pred HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCC--------------
Confidence 5777777777777765433333446777777777777774 444443 35677777777777763
Q ss_pred CCCCCCCCCCccceEEEccCCCcccchhh-hhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCcc
Q 038400 384 SNHDRKNTRPHLRRVVIGEITQLLELPQW-LLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSE 461 (504)
Q Consensus 384 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~ 461 (504)
+..++.. + ..+++|+.|++++|. ++.++ ..+..+++|+.|++++|+..
T Consensus 169 ----------------------l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~----- 218 (272)
T 3rfs_A 169 ----------------------LQSLPEGVF--DKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD----- 218 (272)
T ss_dssp ----------------------CCCCCTTTT--TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC-----
T ss_pred ----------------------cCccCHHHh--cCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCcc-----
Confidence 2222221 2 456889999999885 44444 45788999999999988532
Q ss_pred CCCCCCCcCeEeEeCC
Q 038400 462 DMHHVTTLKSLTIGGC 477 (504)
Q Consensus 462 ~~~~l~~L~~L~l~~c 477 (504)
..+++|+.|++..+
T Consensus 219 --~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 219 --CTCPGIRYLSEWIN 232 (272)
T ss_dssp --CCTTTTHHHHHHHH
T ss_pred --ccCcHHHHHHHHHH
Confidence 23556666665543
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=2.2e-15 Score=146.43 Aligned_cols=219 Identities=15% Similarity=0.081 Sum_probs=165.8
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc-ccCc-cccCCCCcCee-eccCCCCccccCcceeccccc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE-VCPR-KIGNLKHMRYL-DLSGNSKIKKLPKSIYCLELE 277 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~-~~~~l~~L~~L-~l~~~~~~~~lp~~~~~~~l~ 277 (504)
++++.|.++++.+. .+....|.++++|++|+|++|.+. .+|. .+.++++|+.+ .+++|. +.
T Consensus 30 ~~l~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-------------l~ 93 (350)
T 4ay9_X 30 RNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-------------LL 93 (350)
T ss_dssp TTCSEEEEESCCCS---EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-------------CC
T ss_pred CCCCEEEccCCcCC---CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-------------cc
Confidence 57999999987765 333456889999999999999975 4654 57888887764 444443 55
Q ss_pred cCc-hhhhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchh-hcCCC-CcccEEeeccCCCccccCcc
Q 038400 278 ELP-KDIRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFE-EIDQL-RVLRTLSIVCCPRLISLPPA 353 (504)
Q Consensus 278 ~lp-~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l-~~L~~L~l~~~~~l~~l~~~ 353 (504)
.+| ..+..+++|++|++++|.+...++ .+....++..|++.++..+..++. .+..+ ..++.|++++|. ++.++..
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~ 172 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS 172 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh
Confidence 553 346789999999999988766543 455677888999988888887764 34554 468999999874 7788887
Q ss_pred CCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCC
Q 038400 354 IKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFM 433 (504)
Q Consensus 354 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 433 (504)
.....+|+.|.+.++..++... ........+|+.|+++++ .++.+|.. .+.+|+.|.+.++..++
T Consensus 173 ~f~~~~L~~l~l~~~n~l~~i~----------~~~f~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLEELP----------NDVFHGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLK 237 (350)
T ss_dssp SSTTEEEEEEECTTCTTCCCCC----------TTTTTTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCC
T ss_pred hccccchhHHhhccCCcccCCC----------HHHhccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcC
Confidence 7778899999998876655321 112233448999999985 68888764 46899999999999999
Q ss_pred ccCcCCCCCCCcceEeccc
Q 038400 434 ALPRSLKDLEALETLFILG 452 (504)
Q Consensus 434 ~l~~~~~~l~~L~~L~l~~ 452 (504)
.+|. +..+++|+.+++.+
T Consensus 238 ~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 238 KLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCC-TTTCCSCCEEECSC
T ss_pred cCCC-chhCcChhhCcCCC
Confidence 9995 88999999999865
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=1.7e-17 Score=167.90 Aligned_cols=288 Identities=17% Similarity=0.213 Sum_probs=149.4
Q ss_pred CeEEEEEEcCCCCcc---chhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCC----cccEEEeCCCCcc-----ccC
Q 038400 177 RVRHLSFAAANASRK---DFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQ----FLRVLNLSESAIE-----VCP 244 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~-----~lp 244 (504)
.++.+.+..+.+... .+...+..+++|++|+++++... ..........+. +|++|++++|.+. .+|
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 456777777766432 33455666777888888765532 222333333444 5888888888776 356
Q ss_pred ccccCCCCcCeeeccCCCCcccc-Ccc-----------ee-----ccccc-----cCchhhhccccCCeeeecccccccc
Q 038400 245 RKIGNLKHMRYLDLSGNSKIKKL-PKS-----------IY-----CLELE-----ELPKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 245 ~~~~~l~~L~~L~l~~~~~~~~l-p~~-----------~~-----~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
..+..+++|++|++++|. ++.. +.. +. .+.+. .++..+..+++|++|++++|.+...
T Consensus 107 ~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 677777888888888774 3211 100 00 01111 2344445556666666665554322
Q ss_pred c-ccCC-----CCCCccEEeeeCCCCcc----cchhhcCCCCcccEEeeccCCCccc-----c-CccCCCCCCccEEEec
Q 038400 303 E-SGIR-----SLGSLRCLTISGCGDLE----HLFEEIDQLRVLRTLSIVCCPRLIS-----L-PPAIKYLSSLETLFLY 366 (504)
Q Consensus 303 ~-~~~~-----~l~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~l~~-----l-~~~l~~l~~L~~L~l~ 366 (504)
. ..+. .+++|++|++++|.... .++..+..+++|++|++++|. ++. + +.....+++|++|+++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECc
Confidence 1 1111 23466666666654322 134555566666666666653 221 1 2222345666666666
Q ss_pred cCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc-----hhhhhcCCCCCccEEEeccCCCCCc----cCc
Q 038400 367 KCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL-----PQWLLQGSTDTLQNLLIIDCPNFMA----LPR 437 (504)
Q Consensus 367 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~~~L~~L~l~~~~~l~~----l~~ 437 (504)
+|..-..... .+ .......++|+.|+++++. +.+. ...+ ....++|+.|++++|..-.. ++.
T Consensus 265 ~n~l~~~~~~-~l------~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 265 ECGITAKGCG-DL------CRVLRAKESLKELSLAGNE-LGDEGARLLCETL-LEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp TSCCCHHHHH-HH------HHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHH-TSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCCCCHHHHH-HH------HHHHhhCCCcceEECCCCC-CchHHHHHHHHHh-ccCCccceeeEcCCCCCchHHHHHHHH
Confidence 6632211000 00 0000113467777777653 3221 1111 12335778888877752221 345
Q ss_pred CCCCCCCcceEecccCccCCcC-c----cCCC-CCCCcCeEeEeCCC
Q 038400 438 SLKDLEALETLFILGCPKLSSL-S----EDMH-HVTTLKSLTIGGCP 478 (504)
Q Consensus 438 ~~~~l~~L~~L~l~~c~~l~~l-~----~~~~-~l~~L~~L~l~~c~ 478 (504)
.+..+++|++|++++|. +... + ..+. ..++|++|++++|.
T Consensus 336 ~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 55667888888888873 4322 1 2222 25788888888885
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=4.6e-17 Score=164.76 Aligned_cols=285 Identities=19% Similarity=0.216 Sum_probs=194.2
Q ss_pred CCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCccc-chHHHHHHhcCCCcccEEEeCCCCccc-cCcc-ccCCC
Q 038400 175 PKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKI-SQSFVESCISKSQFLRVLNLSESAIEV-CPRK-IGNLK 251 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~-lp~~-~~~l~ 251 (504)
+..++.+.+..+.+....+...+..+++|++|.++++.... ....+...+..+++|++|++++|.+.. .+.. ...+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 34678899988887655666668889999999999887542 122456678889999999999999873 2222 23344
Q ss_pred ----CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccc-c----c-CCCCCCccEEeeeCCC
Q 038400 252 ----HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE-S----G-IRSLGSLRCLTISGCG 321 (504)
Q Consensus 252 ----~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~-~----~-~~~l~~L~~L~l~~~~ 321 (504)
+|++|++++|. ++ ......+|..+..+++|++|++++|.+.... . . ....++|++|++++|.
T Consensus 82 ~~~~~L~~L~L~~n~-i~-------~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LT-------GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp STTCCCCEEECTTSC-CB-------GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred hCCCceeEEEccCCC-CC-------HHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 79999999985 21 1112356788889999999999998865321 1 1 2346789999999986
Q ss_pred Ccc----cchhhcCCCCcccEEeeccCCCccccCccCC-----CCCCccEEEeccCCCccccccccccCCCCCCCCCCCC
Q 038400 322 DLE----HLFEEIDQLRVLRTLSIVCCPRLISLPPAIK-----YLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTR 392 (504)
Q Consensus 322 ~l~----~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~-----~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 392 (504)
... .++..++.+++|++|++++|.....-+..+. ..++|++|++++|..-..... . ........
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~------l~~~l~~~ 226 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-D------LCGIVASK 226 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-H------HHHHHHHC
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-H------HHHHHHhC
Confidence 443 3466777889999999999863222122221 356899999999853321000 0 00001123
Q ss_pred CccceEEEccCCCcccc-----hhhhhcCCCCCccEEEeccCCCCCc-----cCcCCCCCCCcceEecccCccCCc----
Q 038400 393 PHLRRVVIGEITQLLEL-----PQWLLQGSTDTLQNLLIIDCPNFMA-----LPRSLKDLEALETLFILGCPKLSS---- 458 (504)
Q Consensus 393 ~~L~~L~l~~~~~l~~~-----~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~---- 458 (504)
++|+.|+++++. +... ...+ ...+++|+.|++++| .++. ++..+..+++|++|++++|. +..
T Consensus 227 ~~L~~L~Ls~n~-l~~~~~~~l~~~~-~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~ 302 (461)
T 1z7x_W 227 ASLRELALGSNK-LGDVGMAELCPGL-LHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGAR 302 (461)
T ss_dssp TTCCEEECCSSB-CHHHHHHHHHHHH-TSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHH
T ss_pred CCccEEeccCCc-CChHHHHHHHHHH-hcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHH
Confidence 589999999873 4332 1222 135789999999998 4554 67777789999999999984 432
Q ss_pred -CccCC-CCCCCcCeEeEeCCC
Q 038400 459 -LSEDM-HHVTTLKSLTIGGCP 478 (504)
Q Consensus 459 -l~~~~-~~l~~L~~L~l~~c~ 478 (504)
++..+ ...++|+.|++++|.
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHhccCCccceeeEcCCCC
Confidence 22222 234799999999997
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=7.8e-15 Score=135.56 Aligned_cols=172 Identities=22% Similarity=0.260 Sum_probs=108.1
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecccccccccc-c
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQES-G 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~-~ 305 (504)
...++++++++.++.+|..+. .+|+.|++++|. +..++. .+.++++|++|++++|.+...++ .
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-------------LATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCC-------------cCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 356778888888888877665 578888888775 444432 46677778888887776655443 3
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCCCccccccccccCCCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCESLDLNINMEMEGEGS 384 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 384 (504)
+.++++|++|++++|......+..++.+++|++|++++|. ++.+|. .+..+++|+.|++++|..-
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~------------- 144 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQ------------- 144 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-------------
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCC-------------
Confidence 6777777777777765433333456777777777777764 445544 3566777777777766321
Q ss_pred CCCCCCCCCccceEEEccCCCcccchh-hhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCc
Q 038400 385 NHDRKNTRPHLRRVVIGEITQLLELPQ-WLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCP 454 (504)
Q Consensus 385 ~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 454 (504)
.+|. .+ ..+++|+.|++++|. ++.++ ..+..+++|+.|++++|+
T Consensus 145 -----------------------~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 145 -----------------------SIPAGAF--DKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -----------------------CCCTTTT--TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred -----------------------ccCHHHc--CcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 1221 12 345666666666653 34443 346666777777776654
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=2.9e-15 Score=153.52 Aligned_cols=186 Identities=19% Similarity=0.211 Sum_probs=125.4
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCC
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIR 307 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 307 (504)
.+|++|+++++.++.+|..+. ++|++|++++|. +..+| ..+++|++|++++|.+...+. +.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-------------l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~ 119 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-------------LISLP---ELPASLEYLDACDNRLSTLPE-LP 119 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-------------CSCCC---CCCTTCCEEECCSSCCSCCCC-CC
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-------------Ccccc---cccCCCCEEEccCCCCCCcch-hh
Confidence 367778888877777777653 678888887764 44555 345777888887777666655 54
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHD 387 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 387 (504)
+ +|++|++++|. +..+|. .+++|+.|++++|. ++.+|. .+++|+.|++++|..-.++ .
T Consensus 120 ~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp------------~ 177 (571)
T 3cvr_A 120 A--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLP------------E 177 (571)
T ss_dssp T--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCC------------C
T ss_pred c--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcc------------h
Confidence 4 78888887754 444665 57778888887764 555665 4677888888777532211 1
Q ss_pred CCCCCCccceEEEccCCCcccchhhhhcCCCCCc-------cEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc
Q 038400 388 RKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTL-------QNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS 460 (504)
Q Consensus 388 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L-------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 460 (504)
.. ++|+.|+++++ .++.+|. +. .+| +.|++++| .++.+|..+..+++|+.|++++|+....+|
T Consensus 178 --l~-~~L~~L~Ls~N-~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 178 --LP-ESLEALDVSTN-LLESLPA-VP----VRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp --CC-TTCCEEECCSS-CCSSCCC-CC------------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred --hh-CCCCEEECcCC-CCCchhh-HH----HhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 11 56777777774 5666665 31 155 99999887 577889888889999999999986555566
Q ss_pred cCCC
Q 038400 461 EDMH 464 (504)
Q Consensus 461 ~~~~ 464 (504)
..+.
T Consensus 248 ~~l~ 251 (571)
T 3cvr_A 248 ESLS 251 (571)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=2.1e-15 Score=142.52 Aligned_cols=122 Identities=20% Similarity=0.277 Sum_probs=62.2
Q ss_pred CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccC
Q 038400 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGI 306 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 306 (504)
+++|++|++++|.+..++. +..+++|++|++++|. +..++. +.++++|++|++++|.+...+ .+
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-------------l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l 108 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-------------LTDIKP-LANLKNLGWLFLDENKVKDLS-SL 108 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-------------CCCCGG-GTTCTTCCEEECCSSCCCCGG-GG
T ss_pred cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-------------cCCCcc-cccCCCCCEEECCCCcCCCCh-hh
Confidence 3445555555555554432 4555555555555553 334433 455555555555555544433 35
Q ss_pred CCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccC
Q 038400 307 RSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKC 368 (504)
Q Consensus 307 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~ 368 (504)
..+++|++|++++|. +..+ +.++.+++|+.|++++|. +..+ ..+..+++|+.|++++|
T Consensus 109 ~~l~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp TTCTTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS
T ss_pred ccCCCCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCC
Confidence 555555555555543 2233 245555555555555553 3333 33455555555555554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=4.8e-16 Score=148.52 Aligned_cols=219 Identities=15% Similarity=0.157 Sum_probs=152.9
Q ss_pred CeEEEEEEcCCCCccchhhh--hcCCCCeeEEeeecCCcccchHHHHHHh--cCCCcccEEEeCCCCccc-cC----ccc
Q 038400 177 RVRHLSFAAANASRKDFSSL--LSDLGRVRTIVFSTDDEKISQSFVESCI--SKSQFLRVLNLSESAIEV-CP----RKI 247 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~-lp----~~~ 247 (504)
.++++.+.........+... ...+++|+.|.++++... .. .+..+ ..+++|++|++++|.+.. .| ..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT--GT-MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB--SC-CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec--cc-hhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 35677777665543322221 223467999999877643 11 11223 788999999999999884 22 334
Q ss_pred cCCCCcCeeeccCCCCccccCcceeccccccCc-hhhhccccCCeeeeccccccc---c--cccCCCCCCccEEeeeCCC
Q 038400 248 GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP-KDIRHLTSLRAFALTTKQKSL---Q--ESGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 248 ~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~---~--~~~~~~l~~L~~L~l~~~~ 321 (504)
..+++|++|++++|. +..+| ..+..+++|++|++++|.+.. . ...+..+++|++|++++|.
T Consensus 142 ~~~~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 142 WLKPGLKVLSIAQAH-------------SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp TBCSCCCEEEEECCS-------------SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred hhccCCCEEEeeCCC-------------cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 578999999999886 44443 457789999999999987543 2 2234789999999999975
Q ss_pred Ccccchh----hcCCCCcccEEeeccCCCccccCccCCCC---CCccEEEeccCCCccccccccccCCCCCCCCCCCCCc
Q 038400 322 DLEHLFE----EIDQLRVLRTLSIVCCPRLISLPPAIKYL---SSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPH 394 (504)
Q Consensus 322 ~l~~~~~----~~~~l~~L~~L~l~~~~~l~~l~~~l~~l---~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 394 (504)
++.++. .++.+++|++|++++|......|..+..+ ++|++|++++|..
T Consensus 209 -l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l------------------------ 263 (310)
T 4glp_A 209 -METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL------------------------ 263 (310)
T ss_dssp -CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC------------------------
T ss_pred -CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC------------------------
Confidence 454444 25788999999999987544447767666 6899999988742
Q ss_pred cceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCc
Q 038400 395 LRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 395 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
+.+|..+ +++|+.|++++| .++.+|. +..+++|+.|++++++
T Consensus 264 ------------~~lp~~~----~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 264 ------------EQVPKGL----PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ------------CSCCSCC----CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred ------------Cchhhhh----cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 2333333 267888888877 4666665 6778889999988874
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=1.5e-14 Score=133.66 Aligned_cols=174 Identities=22% Similarity=0.292 Sum_probs=128.5
Q ss_pred CCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchhh
Q 038400 251 KHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFEE 329 (504)
Q Consensus 251 ~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~ 329 (504)
.+.+.++++++. +..+|..+. ++++.|++++|.+...++ .+.++++|++|++++|......+..
T Consensus 14 ~~~~~l~~~~~~-------------l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 14 EGKKEVDCQGKS-------------LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp GGGTEEECTTCC-------------CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCeEEecCCCC-------------ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 356778888764 566665554 578889998887765543 5788889999999887655444556
Q ss_pred cCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCccc
Q 038400 330 IDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLE 408 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 408 (504)
+..+++|++|++++|. ++.++ ..+..+++|++|++++|.. ..
T Consensus 79 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l------------------------------------~~ 121 (251)
T 3m19_A 79 FDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQL------------------------------------KS 121 (251)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCC------------------------------------CC
T ss_pred hccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcC------------------------------------CC
Confidence 7888889999998876 44444 5567888888888887742 22
Q ss_pred chhhhhcCCCCCccEEEeccCCCCCccCc-CCCCCCCcceEecccCccCCcCcc-CCCCCCCcCeEeEeCCCc
Q 038400 409 LPQWLLQGSTDTLQNLLIIDCPNFMALPR-SLKDLEALETLFILGCPKLSSLSE-DMHHVTTLKSLTIGGCPA 479 (504)
Q Consensus 409 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~ 479 (504)
++...+ ..+++|+.|+++++ .++.+|. .+..+++|++|++++| .++.++. .+..+++|+.|++++|+-
T Consensus 122 ~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 122 LPSGVF-DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cChhHh-ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 222211 46789999999988 5667765 6899999999999998 5666654 678899999999998763
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=8.2e-17 Score=158.93 Aligned_cols=241 Identities=14% Similarity=0.087 Sum_probs=168.3
Q ss_pred CeEEEEEEcCCCCccc---hhhhhcCCCCeeEEeeecCCcc-cc------hHHHHHHhcCCCcccEEEeCCCCccc----
Q 038400 177 RVRHLSFAAANASRKD---FSSLLSDLGRVRTIVFSTDDEK-IS------QSFVESCISKSQFLRVLNLSESAIEV---- 242 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~-~~------~~~~~~~~~~~~~L~~L~l~~~~~~~---- 242 (504)
.++.+.+.++.+.... +...+..+++|++|.++++... .. ...+...+..+++|++|+|++|.+..
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 5688888887664332 3344778999999999876433 11 11223446889999999999999885
Q ss_pred -cCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhcc---------ccCCeeeecccccc--ccc---ccCC
Q 038400 243 -CPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHL---------TSLRAFALTTKQKS--LQE---SGIR 307 (504)
Q Consensus 243 -lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l---------~~L~~L~l~~~~~~--~~~---~~~~ 307 (504)
+|..+..+++|++|++++|. ++.. ....++..+..+ ++|++|++++|.+. ..+ ..+.
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~-l~~~-------~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNG-LGPQ-------AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSC-CHHH-------HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEECcCCC-CCHH-------HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 77888999999999999985 2211 012344445555 89999999998875 222 3567
Q ss_pred CCCCccEEeeeCCCCcc-----cchhhcCCCCcccEEeeccCCCc----cccCccCCCCCCccEEEeccCCCcccccccc
Q 038400 308 SLGSLRCLTISGCGDLE-----HLFEEIDQLRVLRTLSIVCCPRL----ISLPPAIKYLSSLETLFLYKCESLDLNINME 378 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~L~l~~~~~l----~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 378 (504)
.+++|++|++++|.... .++..+..+++|++|++++|... ..+|..+..+++|++|++++|..-..... .
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-~ 263 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA-A 263 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH-H
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH-H
Confidence 88999999999985432 23337889999999999998742 66788888999999999999964322000 0
Q ss_pred ccCCCCCCCCCCCCCccceEEEccCCCccc-----chhhhhcCCCCCccEEEeccCCCC
Q 038400 379 MEGEGSNHDRKNTRPHLRRVVIGEITQLLE-----LPQWLLQGSTDTLQNLLIIDCPNF 432 (504)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~L~~L~l~~~~~l 432 (504)
+.. .......++|+.|+++++. +.. +|..+. ..+++|+.|++++|..-
T Consensus 264 l~~----~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 264 VVD----AFSKLENIGLQTLRLQYNE-IELDAVRTLKTVID-EKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHH----HHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHH-HHCTTCCEEECTTSBSC
T ss_pred HHH----HHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHH-hcCCCceEEEccCCcCC
Confidence 000 0000224689999999974 444 666652 34799999999998543
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=1e-16 Score=167.61 Aligned_cols=298 Identities=14% Similarity=0.097 Sum_probs=167.1
Q ss_pred CeEEEEEEcCCCCccc---hhhhhcCCCCeeEEeeecCCcc-cchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCC
Q 038400 177 RVRHLSFAAANASRKD---FSSLLSDLGRVRTIVFSTDDEK-ISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKH 252 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~ 252 (504)
.++.+++..+...... +......+++|++|.++++... .........+.++++|++|++++|.+..+|..+..+++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~ 244 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence 4556666555432111 3344556677777777655543 33344555666778888888888777777777777777
Q ss_pred cCeeeccCCCCcc---ccCccee-----------ccccccCchhhhccccCCeeeecccccccc--cccCCCCCCccEEe
Q 038400 253 MRYLDLSGNSKIK---KLPKSIY-----------CLELEELPKDIRHLTSLRAFALTTKQKSLQ--ESGIRSLGSLRCLT 316 (504)
Q Consensus 253 L~~L~l~~~~~~~---~lp~~~~-----------~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~ 316 (504)
|+.|+++++.... ..+..+. ......+|..+..+++|++|++++|.+... ...+..+++|++|+
T Consensus 245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred HHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 7777776432111 0111110 112344566677788888888887764322 12256778888888
Q ss_pred eeCCCCcccchhhcCCCCcccEEeecc----------CCCccc--cCccCCCCCCccEEEeccCCCccccc---------
Q 038400 317 ISGCGDLEHLFEEIDQLRVLRTLSIVC----------CPRLIS--LPPAIKYLSSLETLFLYKCESLDLNI--------- 375 (504)
Q Consensus 317 l~~~~~l~~~~~~~~~l~~L~~L~l~~----------~~~l~~--l~~~l~~l~~L~~L~l~~~~~l~~~~--------- 375 (504)
++++.....++.....+++|++|++.+ |..++. ++.....+++|++|+++.+ .+....
T Consensus 325 L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLK 403 (592)
T ss_dssp EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCC
T ss_pred ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCC
Confidence 774333333344445667777777773 444431 2222334566666666322 111100
Q ss_pred ---cccccC---CCCCCCC---------CCCCCccceEEEccCCC-cccc-hhhhhcCCCCCccEEEeccCCCCC--ccC
Q 038400 376 ---NMEMEG---EGSNHDR---------KNTRPHLRRVVIGEITQ-LLEL-PQWLLQGSTDTLQNLLIIDCPNFM--ALP 436 (504)
Q Consensus 376 ---~~~~~~---~~~~~~~---------~~~~~~L~~L~l~~~~~-l~~~-~~~~~~~~~~~L~~L~l~~~~~l~--~l~ 436 (504)
.....+ ....... ....++|+.|+++.|.+ +... +..+ ...+++|+.|++++|. ++ .++
T Consensus 404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~ 481 (592)
T 3ogk_B 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVG-ESDEGLM 481 (592)
T ss_dssp SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCC-SSHHHHH
T ss_pred CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCC-CCHHHHH
Confidence 000000 0000000 11244778888866543 2221 1122 2346888888888775 43 244
Q ss_pred cCCCCCCCcceEecccCccCCc--CccCCCCCCCcCeEeEeCCC
Q 038400 437 RSLKDLEALETLFILGCPKLSS--LSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 437 ~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~c~ 478 (504)
..+..+++|++|++++|+ +.. ++.....+++|+.|++++|.
T Consensus 482 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 455778999999999997 442 34444578899999999997
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=1.2e-16 Score=154.71 Aligned_cols=226 Identities=14% Similarity=0.182 Sum_probs=173.6
Q ss_pred CCCcccEEEeCCCCccccCccccCC--CCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccc--
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNL--KHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSL-- 301 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l--~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-- 301 (504)
....++.++++++.+. |..+..+ .+++.|++++|. +...+..+..+++|++|++++|.+..
T Consensus 45 ~~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~-------------l~~~~~~~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 45 DESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF-------------MDQPLAEHFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp CSTTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE-------------ECSCCCSCCCCBCCCEEECTTCEECHHH
T ss_pred CchhheeeccccccCC--HHHHHhhhhccceEEEcCCcc-------------ccccchhhccCCCCCEEEccCCCcCHHH
Confidence 3456899999998876 5566666 899999999875 44444456789999999999987653
Q ss_pred ccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCcc--ccCccCCCCCCccEEEeccCCCccccccccc
Q 038400 302 QESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLI--SLPPAIKYLSSLETLFLYKCESLDLNINMEM 379 (504)
Q Consensus 302 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 379 (504)
.+..+..+++|++|++++|......+..++.+++|++|++++|..++ .++..+..+++|++|++++|..++...-
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--- 186 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV--- 186 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH---
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH---
Confidence 45568899999999999987666778889999999999999996565 4677788899999999999954442100
Q ss_pred cCCCCCCCCCCCCC-ccceEEEccCC-Cc--ccchhhhhcCCCCCccEEEeccCCCCC-ccCcCCCCCCCcceEecccCc
Q 038400 380 EGEGSNHDRKNTRP-HLRRVVIGEIT-QL--LELPQWLLQGSTDTLQNLLIIDCPNFM-ALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 380 ~~~~~~~~~~~~~~-~L~~L~l~~~~-~l--~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~ 454 (504)
.......+ +|+.|++++|. .+ ..++..+ ..+++|+.|++++|..++ ..+..+..+++|++|++++|.
T Consensus 187 ------~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 187 ------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLV--RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ------HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred ------HHHHHhcccCCCEEEeCCCcccCCHHHHHHHH--hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 00112345 89999999985 34 3455555 568999999999997554 556678899999999999997
Q ss_pred cCCcC-ccCCCCCCCcCeEeEeCC
Q 038400 455 KLSSL-SEDMHHVTTLKSLTIGGC 477 (504)
Q Consensus 455 ~l~~l-~~~~~~l~~L~~L~l~~c 477 (504)
.+... ...+..+++|+.|++++|
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc
Confidence 33321 124668999999999998
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.7e-15 Score=133.21 Aligned_cols=127 Identities=16% Similarity=0.213 Sum_probs=76.6
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccc-ccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSL-QES 304 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~~~ 304 (504)
.+++|++|+++++.+..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|.+.. .+.
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-------------~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-------------ATNYN-PISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-------------CSCCG-GGTTCTTCCEEEEECTTCBGGGSC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-------------CCcch-hhhcCCCCCEEEeECCccCcccCh
Confidence 3456777777777777666 56677777777777663 33332 45566666666666665543 344
Q ss_pred cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccC
Q 038400 305 GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKC 368 (504)
Q Consensus 305 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~ 368 (504)
.+..+++|++|++++|......|..++.+++|++|++++|..++.+| .+..+++|+.|++++|
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 56666666666666655444455566666666666666654344444 3555556666665554
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=3.5e-15 Score=154.55 Aligned_cols=124 Identities=19% Similarity=0.280 Sum_probs=72.3
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+.+|+.|+++++.+..+| .+..+++|+.|+|++|. +..+|. +..+++|++|++++|.+...+ .
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-------------l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~ 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-------------LTDIKP-LTNLKNLGWLFLDENKIKDLS-S 104 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-------------CCCCGG-GGGCTTCCEEECCSSCCCCCT-T
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-------------CCCChh-hccCCCCCEEECcCCCCCCCh-h
Confidence 3455666666666666554 35666666666666654 444443 556666666666666555443 4
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
+..+++|+.|++++|. +..+ +.++.+++|+.|+|++|. +..+ ..+..+++|+.|+|++|.
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp STTCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSC
T ss_pred hccCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCc
Confidence 6666666666666653 3333 346666666666666653 3444 345566666666666653
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=7.3e-15 Score=138.78 Aligned_cols=182 Identities=18% Similarity=0.261 Sum_probs=128.7
Q ss_pred EeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCcc
Q 038400 234 NLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLR 313 (504)
Q Consensus 234 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 313 (504)
.+....+... .....+.+|++|++++|. +..+| .+..+++|++|++++|.+...++ +.++++|+
T Consensus 30 ~l~~~~~~~~-~~~~~l~~L~~L~l~~~~-------------i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~ 93 (291)
T 1h6t_A 30 NLKKKSVTDA-VTQNELNSIDQIIANNSD-------------IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLG 93 (291)
T ss_dssp HTTCSCTTSE-ECHHHHHTCCEEECTTSC-------------CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred HhcCCCcccc-cchhhcCcccEEEccCCC-------------cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCC
Confidence 4555555433 234578899999999885 55665 47889999999999998887765 99999999
Q ss_pred EEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCC
Q 038400 314 CLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRP 393 (504)
Q Consensus 314 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 393 (504)
+|++++|. +..++ .++.+++|++|++++|. +..++ .+..+++|+.|++++|..-.. ......+
T Consensus 94 ~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~-------------~~l~~l~ 156 (291)
T 1h6t_A 94 WLFLDENK-VKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-------------TVLSRLT 156 (291)
T ss_dssp EEECCSSC-CCCGG-GGTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCCC-------------GGGGGCT
T ss_pred EEECCCCc-CCCCh-hhccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCcc-------------hhhccCC
Confidence 99999965 55554 58999999999999985 55564 578899999999999853321 1111233
Q ss_pred ccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCc
Q 038400 394 HLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 394 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
+|+.|+++++ .+..++. + ..+++|+.|++++| .++.++. +..+++|+.|++++|+
T Consensus 157 ~L~~L~L~~N-~l~~~~~-l--~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 157 KLDTLSLEDN-QISDIVP-L--AGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp TCSEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred CCCEEEccCC-ccccchh-h--cCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence 6777777664 4444443 3 45667777777666 4555553 6667777777777663
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=3.6e-16 Score=163.35 Aligned_cols=283 Identities=12% Similarity=0.072 Sum_probs=151.4
Q ss_pred CeEEEEEEcCC-CCccchhhhhcCCCCeeEEeeecCCcc-cchHHHHHHhcCCCcccEEEeCCCCcc-----ccCccccC
Q 038400 177 RVRHLSFAAAN-ASRKDFSSLLSDLGRVRTIVFSTDDEK-ISQSFVESCISKSQFLRVLNLSESAIE-----VCPRKIGN 249 (504)
Q Consensus 177 ~~~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~lp~~~~~ 249 (504)
.++.+.+..+. .....+......+++|++|++.++... ....++......++.|++|+++++.++ .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 35667776554 212233444557788888888766432 112234455667788888888887775 34445567
Q ss_pred CCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccc----cccccCCCCCCccEEeeeCCCCccc
Q 038400 250 LKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKS----LQESGIRSLGSLRCLTISGCGDLEH 325 (504)
Q Consensus 250 l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~ 325 (504)
+++|++|++++|. +..+|..+..+++|++|+++..... .....+..+++|+.|+++++ ....
T Consensus 219 ~~~L~~L~L~~~~-------------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~ 284 (592)
T 3ogk_B 219 CRSLVSVKVGDFE-------------ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNE 284 (592)
T ss_dssp CTTCCEEECSSCB-------------GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTT
T ss_pred CCCCcEEeccCcc-------------HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhH
Confidence 7888888888764 4556666677777777777632211 11234555666666666553 3344
Q ss_pred chhhcCCCCcccEEeeccCCCcc--ccCccCCCCCCccEEEeccCC-------------CccccccccccC---------
Q 038400 326 LFEEIDQLRVLRTLSIVCCPRLI--SLPPAIKYLSSLETLFLYKCE-------------SLDLNINMEMEG--------- 381 (504)
Q Consensus 326 ~~~~~~~l~~L~~L~l~~~~~l~--~l~~~l~~l~~L~~L~l~~~~-------------~l~~~~~~~~~~--------- 381 (504)
+|..+..+++|++|++++|. +. .++..+..+++|++|+++++. .++.. .+..
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L---~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL---RIERGADEQGMED 360 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE---EEECCCCSSTTSS
T ss_pred HHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE---EeecCcccccccc
Confidence 55556666667777776665 22 122234556666666665221 11100 0000
Q ss_pred -CCCCC-----CCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEecc---CCCCCccCc------CCCCCCCcc
Q 038400 382 -EGSNH-----DRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIID---CPNFMALPR------SLKDLEALE 446 (504)
Q Consensus 382 -~~~~~-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~---~~~l~~l~~------~~~~l~~L~ 446 (504)
..... ......++|+.|++. |..++..........+++|+.|++++ |..++..|. .+..+++|+
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred ccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 00000 000113466777763 33443321111112367777777763 445554321 245577888
Q ss_pred eEecccCcc-CCc-CccC-CCCCCCcCeEeEeCCC
Q 038400 447 TLFILGCPK-LSS-LSED-MHHVTTLKSLTIGGCP 478 (504)
Q Consensus 447 ~L~l~~c~~-l~~-l~~~-~~~l~~L~~L~l~~c~ 478 (504)
+|++++|.. +.. .+.. ...+++|+.|++++|.
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 888876653 221 1111 1247788888888876
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.6e-14 Score=128.18 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=93.4
Q ss_pred hccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEE
Q 038400 284 RHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETL 363 (504)
Q Consensus 284 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L 363 (504)
..+++|++|++++|.+...+ .+..+++|++|++++| .+..+ ..++.+++|++|++++|......+..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45566666666666555444 4666666777777665 33333 356667777777777765444456666777777777
Q ss_pred EeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCC
Q 038400 364 FLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLE 443 (504)
Q Consensus 364 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~ 443 (504)
++++|.... ..+..+ ..+++|+.|++++|..++.+| .+..++
T Consensus 118 ~Ls~n~i~~-----------------------------------~~~~~l--~~l~~L~~L~L~~n~~i~~~~-~l~~l~ 159 (197)
T 4ezg_A 118 DISHSAHDD-----------------------------------SILTKI--NTLPKVNSIDLSYNGAITDIM-PLKTLP 159 (197)
T ss_dssp ECCSSBCBG-----------------------------------GGHHHH--TTCSSCCEEECCSCTBCCCCG-GGGGCS
T ss_pred EecCCccCc-----------------------------------HhHHHH--hhCCCCCEEEccCCCCccccH-hhcCCC
Confidence 776653211 123333 456677777777765566665 466777
Q ss_pred CcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 444 ALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 444 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
+|++|++++| .++.++ .+..+++|+.|++++++
T Consensus 160 ~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 160 ELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 7777777776 455555 55667777777777665
No 100
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.57 E-value=2.9e-15 Score=170.08 Aligned_cols=133 Identities=24% Similarity=0.366 Sum_probs=110.4
Q ss_pred cchHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhh----hhhc------------cCCchhHHHhhhhCCChhhHh
Q 038400 13 PNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY----LEQK------------ESGILPILRLSYYQLPPHLKQ 76 (504)
Q Consensus 13 ~~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~----~~~~------------~~~i~~~L~~sy~~L~~~~k~ 76 (504)
+++.+++++|+++|+|+||||+++|++|+.+. ..|+. +... ...+..++.+||+.|++++|.
T Consensus 304 ~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~ 381 (1249)
T 3sfz_A 304 EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKD 381 (1249)
T ss_dssp TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHH
T ss_pred hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHH
Confidence 45677899999999999999999999998654 35765 1111 123788999999999999999
Q ss_pred hhhhhcccCCCCccChHHHHHHHHHccCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEEeChhHHHHH
Q 038400 77 CVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLA 156 (504)
Q Consensus 77 ~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~mhdl~~~~~ 156 (504)
||+|||+||+++.|++..++..|.++ ++.+..++.+|++++|++... .+....|+||+++|+++
T Consensus 382 ~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~----~~~~~~~~~h~l~~~~~ 445 (1249)
T 3sfz_A 382 YYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNR----NGKSFCYYLHDLQVDFL 445 (1249)
T ss_dssp HHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEE----SSSSEEEECCHHHHHHH
T ss_pred HHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEec----CCCceEEEecHHHHHHH
Confidence 99999999999999999999999544 356788999999999998654 34456799999999999
Q ss_pred HHHhcCc
Q 038400 157 LLVAKDE 163 (504)
Q Consensus 157 ~~~~~~~ 163 (504)
+....++
T Consensus 446 ~~~~~~~ 452 (1249)
T 3sfz_A 446 TEKNRSQ 452 (1249)
T ss_dssp HHHTGGG
T ss_pred HhhhhHH
Confidence 8887665
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=4.5e-15 Score=153.79 Aligned_cols=187 Identities=17% Similarity=0.239 Sum_probs=141.7
Q ss_pred ccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCC
Q 038400 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSL 309 (504)
Q Consensus 230 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l 309 (504)
+..+.+..+.+..++ .+..+.+|+.|++++|. +..+| .+..+++|+.|++++|.+...++ +..+
T Consensus 23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~-------------i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l 86 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSD-------------IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNL 86 (605)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCC-------------CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGC
T ss_pred HHHHhccCCCccccc-chhcCCCCCEEECcCCC-------------CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccC
Confidence 444556666665443 25678999999999885 56665 58899999999999998877765 8999
Q ss_pred CCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCC
Q 038400 310 GSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRK 389 (504)
Q Consensus 310 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 389 (504)
++|+.|++++|. +..++ .++.+++|+.|++++|. +..++ .+..+++|+.|++++|..-.. ...
T Consensus 87 ~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-------------~~l 149 (605)
T 1m9s_A 87 KNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-------------TVL 149 (605)
T ss_dssp TTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC-------------GGG
T ss_pred CCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCCc-------------hhh
Confidence 999999999974 55554 78999999999999986 55554 488899999999999854321 112
Q ss_pred CCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCcc
Q 038400 390 NTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPK 455 (504)
Q Consensus 390 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 455 (504)
...++|+.|+|+++ .+..++. + ..+++|+.|+|++| .+..+| .+..+++|+.|+|++|+.
T Consensus 150 ~~l~~L~~L~Ls~N-~l~~~~~-l--~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 150 SRLTKLDTLSLEDN-QISDIVP-L--AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GSCTTCSEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred cccCCCCEEECcCC-cCCCchh-h--ccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcC
Confidence 23457888888886 4555544 4 67788999999887 466665 478888899999988753
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=1.9e-15 Score=147.69 Aligned_cols=245 Identities=16% Similarity=0.097 Sum_probs=136.0
Q ss_pred hhhhhcCCCCeeEEeeecCCcc-cchHHHHHHhcCCC-cccEEEeCCCCcccc-CccccCC-----CCcCeeeccCCCCc
Q 038400 193 FSSLLSDLGRVRTIVFSTDDEK-ISQSFVESCISKSQ-FLRVLNLSESAIEVC-PRKIGNL-----KHMRYLDLSGNSKI 264 (504)
Q Consensus 193 ~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l-p~~~~~l-----~~L~~L~l~~~~~~ 264 (504)
++......++|+.|+++++... .........+.+++ +|++|++++|.+... +..+..+ ++|++|++++|. +
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 92 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-L 92 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-G
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-C
Confidence 3444555566888888877654 22223335567777 788888888888743 3444443 788888888875 2
Q ss_pred cccCcceeccccccCchhhhcc-ccCCeeeecccccccccc-----cCCC-CCCccEEeeeCCCCcc----cchhhcCCC
Q 038400 265 KKLPKSIYCLELEELPKDIRHL-TSLRAFALTTKQKSLQES-----GIRS-LGSLRCLTISGCGDLE----HLFEEIDQL 333 (504)
Q Consensus 265 ~~lp~~~~~~~l~~lp~~i~~l-~~L~~L~l~~~~~~~~~~-----~~~~-l~~L~~L~l~~~~~l~----~~~~~~~~l 333 (504)
+..+ ...+...+..+ ++|++|++++|.+...+. .+.. .++|++|++++|.... .++..+..+
T Consensus 93 ~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 165 (362)
T 3goz_A 93 SYKS-------SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165 (362)
T ss_dssp GGSC-------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred ChHH-------HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence 1111 01111123344 788888888887655432 1334 3588888888865432 344555555
Q ss_pred C-cccEEeeccCCCccccC-----ccCCCC-CCccEEEeccCCCccccccccccCCCCCCCCCCC-CCccceEEEccCCC
Q 038400 334 R-VLRTLSIVCCPRLISLP-----PAIKYL-SSLETLFLYKCESLDLNINMEMEGEGSNHDRKNT-RPHLRRVVIGEITQ 405 (504)
Q Consensus 334 ~-~L~~L~l~~~~~l~~l~-----~~l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~ 405 (504)
+ +|++|++++|. ++... ..+..+ ++|++|++++|..-..... ........ .++|+.|+++++ .
T Consensus 166 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~-------~l~~~l~~~~~~L~~L~Ls~N-~ 236 (362)
T 3goz_A 166 PANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA-------ELAYIFSSIPNHVVSLNLCLN-C 236 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH-------HHHHHHHHSCTTCCEEECCSS-C
T ss_pred CccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH-------HHHHHHhcCCCCceEEECcCC-C
Confidence 5 88888888875 33222 233344 4888888888753221000 00000000 135666776664 3
Q ss_pred cccchh-h--hhcCCCCCccEEEeccCC-------CCCccCcCCCCCCCcceEecccCc
Q 038400 406 LLELPQ-W--LLQGSTDTLQNLLIIDCP-------NFMALPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 406 l~~~~~-~--~~~~~~~~L~~L~l~~~~-------~l~~l~~~~~~l~~L~~L~l~~c~ 454 (504)
+...+. . .....+++|+.|++++|. .+..++..+..+++|+.|+++++.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 333221 0 111455667777776664 122334455666667777776664
No 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=3.5e-17 Score=168.59 Aligned_cols=206 Identities=18% Similarity=0.179 Sum_probs=143.8
Q ss_pred cCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCccee-ccccccCchhhhccccCCeee-ecccccccc
Q 038400 225 SKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIY-CLELEELPKDIRHLTSLRAFA-LTTKQKSLQ 302 (504)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~-~~~l~~lp~~i~~l~~L~~L~-l~~~~~~~~ 302 (504)
...++|+.|+|++|.++.+|+.++++++|+.|++++|..+..+|..+. +.....+|..++.+++|+.|+ ++.+.....
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 457889999999999999999999999999999976543334443222 112345567788888888888 444322111
Q ss_pred cc------cCCC--CCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccc
Q 038400 303 ES------GIRS--LGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLN 374 (504)
Q Consensus 303 ~~------~~~~--l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~ 374 (504)
+. .+.. ...|+.|++++| .+..+|. ++.+++|+.|++++|. ++.+|..++.+++|+.|++++|.
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~----- 497 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA----- 497 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-----
T ss_pred hhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-----
Confidence 00 0111 125788888886 4556775 8888888888888875 66888888888888888888763
Q ss_pred ccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCcc--CcCCCCCCCcceEeccc
Q 038400 375 INMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMAL--PRSLKDLEALETLFILG 452 (504)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~ 452 (504)
++.+| .+ ..+++|+.|+|++| .++.+ |..++.+++|+.|++++
T Consensus 498 -------------------------------l~~lp-~l--~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 498 -------------------------------LENVD-GV--ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp -------------------------------CCCCG-GG--TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred -------------------------------CCCCc-cc--CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecC
Confidence 22344 34 56788999999887 45665 78888899999999998
Q ss_pred CccCCcCccCCC----CCCCcCeEeE
Q 038400 453 CPKLSSLSEDMH----HVTTLKSLTI 474 (504)
Q Consensus 453 c~~l~~l~~~~~----~l~~L~~L~l 474 (504)
| .++.+|+... .+|+|+.|++
T Consensus 543 N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 543 N-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp S-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-cCCCCccHHHHHHHHCcccCccCC
Confidence 7 4666655433 3688888753
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=2.1e-14 Score=147.14 Aligned_cols=188 Identities=20% Similarity=0.204 Sum_probs=141.5
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP 280 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp 280 (504)
.+++.|+++++.... + +..+ +++|++|++++|.++.+| ..+++|++|++++|. +..+|
T Consensus 59 ~~L~~L~Ls~n~L~~---l-p~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-------------l~~ip 116 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS---L-PDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNR-------------LSTLP 116 (571)
T ss_dssp TTCSEEECCSSCCSC---C-CSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-------------CSCCC
T ss_pred CCccEEEeCCCCCCc---c-CHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-------------CCCcc
Confidence 478899998776541 1 1112 378999999999999988 568899999999985 55566
Q ss_pred hhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCc
Q 038400 281 KDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSL 360 (504)
Q Consensus 281 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L 360 (504)
. +.. +|++|++++|.+...+. .+++|+.|++++|. +..+|. .+++|++|++++|. ++.+|. +. ++|
T Consensus 117 ~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L 182 (571)
T 3cvr_A 117 E-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESL 182 (571)
T ss_dssp C-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTC
T ss_pred h-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCC
Confidence 5 444 89999999998887665 68999999999965 555775 67899999999985 666888 65 899
Q ss_pred cEEEeccCCCccccccccccCCCCCCCCCCCCCcc-------ceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCC
Q 038400 361 ETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHL-------RRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFM 433 (504)
Q Consensus 361 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 433 (504)
+.|++++|..-.++ . ... +| +.|+++++ .++.+|.++ ..+++|+.|++++|+...
T Consensus 183 ~~L~Ls~N~L~~lp-------------~-~~~-~L~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 183 EALDVSTNLLESLP-------------A-VPV-RNHHSEETEIFFRCREN-RITHIPENI--LSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CEEECCSSCCSSCC-------------C-CC---------CCEEEECCSS-CCCCCCGGG--GGSCTTEEEECCSSSCCH
T ss_pred CEEECcCCCCCchh-------------h-HHH-hhhcccccceEEecCCC-cceecCHHH--hcCCCCCEEEeeCCcCCC
Confidence 99999998643321 1 111 55 99999985 678899887 458999999999997655
Q ss_pred ccCcCCCCC
Q 038400 434 ALPRSLKDL 442 (504)
Q Consensus 434 ~l~~~~~~l 442 (504)
.+|..+..+
T Consensus 245 ~~p~~l~~l 253 (571)
T 3cvr_A 245 RIRESLSQQ 253 (571)
T ss_dssp HHHHHHHHH
T ss_pred cCHHHHHHh
Confidence 666555443
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=1.1e-13 Score=123.84 Aligned_cols=122 Identities=30% Similarity=0.395 Sum_probs=70.5
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeeccccccccccc-CCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKSLQESG-IRS 308 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~-~~~ 308 (504)
+.++.+++.++.+|..+ ..+|++|++++|. +..+|.. +..+++|++|++++|.+...+.. +..
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNS-------------LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC-------------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCc-------------cCcCChhhhcccccCcEEECCCCccCccChhhcCC
Confidence 44555666666666544 3466667766654 3344332 45666666666666655544332 466
Q ss_pred CCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCC
Q 038400 309 LGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCE 369 (504)
Q Consensus 309 l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 369 (504)
+++|++|++++|. +..++ ..++.+++|++|++++|. ++.++. .+..+++|++|++++|.
T Consensus 75 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 75 LTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc
Confidence 6777777776654 33333 335667777777777664 444443 35666777777776653
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=6.5e-14 Score=125.41 Aligned_cols=128 Identities=27% Similarity=0.383 Sum_probs=99.0
Q ss_pred CCcccEEEeCCCCccccCcc-ccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeecccccccccc
Q 038400 227 SQFLRVLNLSESAIEVCPRK-IGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKSLQES 304 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~ 304 (504)
.++|++|+++++.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+...++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-------------LQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-------------cCccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 45788999999988877654 6788999999999875 5555544 4788999999999888776654
Q ss_pred c-CCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCC
Q 038400 305 G-IRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCE 369 (504)
Q Consensus 305 ~-~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 369 (504)
. +.++++|++|++++|. +..++ ..++.+++|++|++++|. ++.++. .+..+++|++|++++|+
T Consensus 94 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred hHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 4 6889999999999865 44444 447889999999999985 555554 47788899999888874
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.8e-14 Score=133.91 Aligned_cols=121 Identities=24% Similarity=0.258 Sum_probs=50.6
Q ss_pred CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccC
Q 038400 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGI 306 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 306 (504)
+++|++|++++|.+..+| .+..+++|++|++++|. +..+|. +..+++|++|++++|.+...+. +
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-------------i~~~~~-l~~l~~L~~L~L~~N~l~~l~~-~ 103 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-------------ISDLSP-LKDLTKLEELSVNRNRLKNLNG-I 103 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-------------CCCCGG-GTTCSSCCEEECCSSCCSCCTT-C
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-------------cCCChh-hccCCCCCEEECCCCccCCcCc-c
Confidence 344444455444444444 34444444444444443 333333 4444444444444444433322 1
Q ss_pred CCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccC
Q 038400 307 RSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKC 368 (504)
Q Consensus 307 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~ 368 (504)
.. ++|++|++++|. +..++ .++.+++|+.|++++|. ++.++ .+..+++|+.|++++|
T Consensus 104 ~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS
T ss_pred cc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC
Confidence 22 444444444432 22222 34444444444444432 33332 2334444444444443
No 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.51 E-value=8e-15 Score=154.62 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=96.1
Q ss_pred cCCchHHHHHHHhhhcCCC-ChhhhhhhhhccCCchhHHHhhhhCCChhh-HhhhhhhcccCCCCccChHHHHHHHHHcc
Q 038400 26 CGGIPLAVRALGSLLYCST-DEHDWEYLEQKESGILPILRLSYYQLPPHL-KQCVAYCSIFPKDYPFDSFSLVQFWMAHG 103 (504)
Q Consensus 26 c~GlPLal~~ig~~L~~~~-~~~~W~~~~~~~~~i~~~L~~sy~~L~~~~-k~~fl~~a~fp~~~~i~~~~li~~w~~~g 103 (504)
|+|+||||+++|+.|+++. +.++|+.. ....+..+|++||+.|++++ |.||+|||+||+++.|....++.+|+++|
T Consensus 323 CgGLPLALkLaGs~Lr~k~~s~eeW~~~--~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG 400 (1221)
T 1vt4_I 323 LTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSHHHHHHC--SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC
T ss_pred hCCCHHHHHHHHHHHhCCCCCHHHHhcC--ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC
Confidence 9999999999999999764 66788764 23568899999999999999 99999999999999999999999998876
Q ss_pred CcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEEeChhHHHHH
Q 038400 104 LLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLA 156 (504)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~mhdl~~~~~ 156 (504)
++.+..++++|++++|++... ....|+|||++++++
T Consensus 401 -----------eedAe~~L~eLvdRSLLq~d~------~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 401 -----------KSDVMVVVNKLHKYSLVEKQP------KESTISIPSIYLELK 436 (1221)
T ss_dssp -----------SHHHHHHHHHHHTSSSSSBCS------SSSEEBCCCHHHHHH
T ss_pred -----------HHHHHHHHHHHHhhCCEEEeC------CCCEEEehHHHHHHh
Confidence 124778999999999998631 234799999999866
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=3.2e-15 Score=156.25 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=59.3
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccc-----cCccccCCC
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEV-----CPRKIGNLK 251 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----lp~~~~~l~ 251 (504)
.++++.+..+.+....+......+++|++|.+.++. ............++++|++|++++|.++. ++.....++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 568888888776443333333468899999998653 23344455666688999999999988652 334445778
Q ss_pred CcCeeeccCCC
Q 038400 252 HMRYLDLSGNS 262 (504)
Q Consensus 252 ~L~~L~l~~~~ 262 (504)
+|++|++++|.
T Consensus 185 ~L~~L~l~~~~ 195 (594)
T 2p1m_B 185 SLVSLNISCLA 195 (594)
T ss_dssp CCCEEECTTCC
T ss_pred cCcEEEecccC
Confidence 89999998874
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=9.1e-14 Score=129.13 Aligned_cols=172 Identities=17% Similarity=0.156 Sum_probs=130.5
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+..+..++++++.++.++ .+..+++|++|++++|. +..+| .+..+++|++|++++|.+...++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-------------i~~l~-~l~~l~~L~~L~L~~N~i~~~~~- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-------------IQSLA-GMQFFTNLKELHLSHNQISDLSP- 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-------------CCCCT-TGGGCTTCCEEECCSSCCCCCGG-
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-------------cccch-HHhhCCCCCEEECCCCccCCChh-
Confidence 3456777788899888777 67889999999999875 66666 67888999999999888877766
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSN 385 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 385 (504)
+.++++|++|++++|. +..+|.. .. ++|+.|++++|. ++.++ .+..+++|+.|++++|.
T Consensus 81 l~~l~~L~~L~L~~N~-l~~l~~~-~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~---------------- 139 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNR-LKNLNGI-PS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK---------------- 139 (263)
T ss_dssp GTTCSSCCEEECCSSC-CSCCTTC-CC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC----------------
T ss_pred hccCCCCCEEECCCCc-cCCcCcc-cc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc----------------
Confidence 8889999999999864 5555543 33 889999998874 55665 47788888888888874
Q ss_pred CCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc
Q 038400 386 HDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS 460 (504)
Q Consensus 386 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 460 (504)
++.++ .+ ..+++|+.|++++|. ++.+ ..+..+++|+.|++++|+ +...|
T Consensus 140 --------------------i~~~~-~l--~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 140 --------------------LKSIV-ML--GFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp --------------------CCBCG-GG--GGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEEE-EECCC
T ss_pred --------------------CCCCh-HH--ccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCCc-ccCCc
Confidence 22222 22 457899999999884 5555 568899999999999985 34334
No 111
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.48 E-value=1.6e-15 Score=158.43 Aligned_cols=300 Identities=14% Similarity=0.107 Sum_probs=147.0
Q ss_pred CeEEEEEEcCCCCc---cchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCC-CccccCccccCCCC
Q 038400 177 RVRHLSFAAANASR---KDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSES-AIEVCPRKIGNLKH 252 (504)
Q Consensus 177 ~~~~l~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~lp~~~~~l~~ 252 (504)
.++.+.+..+.+.. ..+......+++|++|.++.+........+...+.++++|++|++++| .+..+|..+..+++
T Consensus 157 ~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 236 (594)
T 2p1m_B 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ 236 (594)
T ss_dssp TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTT
T ss_pred CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCc
Confidence 44555555443211 112333345667777777654422333444444555677777777776 34455666666677
Q ss_pred cCeeeccCCCC------ccccCcc------------eeccccccCchhhhccccCCeeeecccccccc--cccCCCCCCc
Q 038400 253 MRYLDLSGNSK------IKKLPKS------------IYCLELEELPKDIRHLTSLRAFALTTKQKSLQ--ESGIRSLGSL 312 (504)
Q Consensus 253 L~~L~l~~~~~------~~~lp~~------------~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L 312 (504)
|+.|+++++.. +..++.. +.......+|..+..+++|++|++++|.+... ...+..+++|
T Consensus 237 L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L 316 (594)
T 2p1m_B 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316 (594)
T ss_dssp CSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTC
T ss_pred ceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCc
Confidence 77776554421 0001100 00111223444555678888888887763321 1224577888
Q ss_pred cEEeeeCCCCcccchhhcCCCCcccEEeecc--------CCCccc--cCccCCCCCCccEEEeccCCCccccc-------
Q 038400 313 RCLTISGCGDLEHLFEEIDQLRVLRTLSIVC--------CPRLIS--LPPAIKYLSSLETLFLYKCESLDLNI------- 375 (504)
Q Consensus 313 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~--------~~~l~~--l~~~l~~l~~L~~L~l~~~~~l~~~~------- 375 (504)
++|++++|.....++.....+++|++|++.+ |..++. +......+++|+.|.+..+ .+....
T Consensus 317 ~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 317 QRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR-QMTNAALITIARN 395 (594)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES-CCCHHHHHHHHHH
T ss_pred CEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC-CcCHHHHHHHHhh
Confidence 8888887622222222333467777777733 222211 1111112444555533222 111000
Q ss_pred -----ccccc--C---CCCCCC---------CCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC
Q 038400 376 -----NMEME--G---EGSNHD---------RKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP 436 (504)
Q Consensus 376 -----~~~~~--~---~~~~~~---------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 436 (504)
..... + ...... .....++|+.|++.+ .+.+.........+++|+.|++++|......+
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 00000 0 000000 011123566666654 33222111111236788888888775322212
Q ss_pred cCC-CCCCCcceEecccCccCCcC-ccCCCCCCCcCeEeEeCCCc
Q 038400 437 RSL-KDLEALETLFILGCPKLSSL-SEDMHHVTTLKSLTIGGCPA 479 (504)
Q Consensus 437 ~~~-~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~ 479 (504)
..+ ..+++|++|++++|+..... ...+..+++|+.|++++|+.
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 222 55899999999999752222 22344689999999999986
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=2.3e-14 Score=139.92 Aligned_cols=238 Identities=12% Similarity=0.088 Sum_probs=154.2
Q ss_pred CCCeEEEEEEcCCCCccc---hhhhhcCCC-CeeEEeeecCCcccc-hHHHHHHhcCC-CcccEEEeCCCCccccC-cc-
Q 038400 175 PKRVRHLSFAAANASRKD---FSSLLSDLG-RVRTIVFSTDDEKIS-QSFVESCISKS-QFLRVLNLSESAIEVCP-RK- 246 (504)
Q Consensus 175 ~~~~~~l~l~~~~~~~~~---~~~~~~~~~-~L~~L~l~~~~~~~~-~~~~~~~~~~~-~~L~~L~l~~~~~~~lp-~~- 246 (504)
+..++.+++..+.+.... +...+..++ +|+.|+++++..... ...+...+... +.|++|++++|.++..+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 456889999888764322 225677788 899999998876522 22333344444 99999999999998544 32
Q ss_pred ---ccCC-CCcCeeeccCCCCccccCcceeccccccCchhhhc-cccCCeeeecccccccc-----cccCCCCC-CccEE
Q 038400 247 ---IGNL-KHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRH-LTSLRAFALTTKQKSLQ-----ESGIRSLG-SLRCL 315 (504)
Q Consensus 247 ---~~~l-~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~-----~~~~~~l~-~L~~L 315 (504)
+..+ ++|++|++++|. ++..+ ...+...+.. .++|++|++++|.+... +..+..++ +|++|
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~-l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWND-FSSKS-------SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSC-GGGSC-------HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHHHhCCCCccEEECcCCc-CCcHH-------HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 4555 899999999985 22221 1111222334 36999999999887632 23344555 99999
Q ss_pred eeeCCCCcccchh----hcCCC-CcccEEeeccCCCccc-----cCccCCC-CCCccEEEeccCCCccccccccccCCCC
Q 038400 316 TISGCGDLEHLFE----EIDQL-RVLRTLSIVCCPRLIS-----LPPAIKY-LSSLETLFLYKCESLDLNINMEMEGEGS 384 (504)
Q Consensus 316 ~l~~~~~l~~~~~----~~~~l-~~L~~L~l~~~~~l~~-----l~~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 384 (504)
++++|......+. .+..+ ++|++|++++|. ++. ++..+.. .++|++|++++|..-..... .
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-------~ 244 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE-------N 244 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH-------H
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH-------H
Confidence 9999865444443 34455 599999999986 444 5655555 35999999999864321100 0
Q ss_pred CCCCCCCCCccceEEEccCC--C-----cccchhhhhcCCCCCccEEEeccCC
Q 038400 385 NHDRKNTRPHLRRVVIGEIT--Q-----LLELPQWLLQGSTDTLQNLLIIDCP 430 (504)
Q Consensus 385 ~~~~~~~~~~L~~L~l~~~~--~-----l~~~~~~~~~~~~~~L~~L~l~~~~ 430 (504)
........++|+.|+++++. . +..++..+ ..+++|+.|+++++.
T Consensus 245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCc
Confidence 00111233479999999874 1 22223333 467788899998885
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=9.1e-13 Score=118.87 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=37.8
Q ss_pred hhccccCCeeeecccccccccc-cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCcc
Q 038400 283 IRHLTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLE 361 (504)
Q Consensus 283 i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~ 361 (504)
+..+++|++|++++|.+...++ .+.++++|++|++++|......+..++.+++|++|++++|......|..+..+++|+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 3444455555555444433322 344455555555554433222223344455555555554432222234444444444
Q ss_pred EEEeccC
Q 038400 362 TLFLYKC 368 (504)
Q Consensus 362 ~L~l~~~ 368 (504)
.|++++|
T Consensus 133 ~L~L~~N 139 (220)
T 2v70_A 133 LLSLYDN 139 (220)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 4444444
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1.1e-13 Score=119.29 Aligned_cols=131 Identities=21% Similarity=0.300 Sum_probs=98.0
Q ss_pred CCCcccEEEeCCCCcc--ccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccc-c
Q 038400 226 KSQFLRVLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSL-Q 302 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~ 302 (504)
..+.|++|++++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.. .
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-------------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------------LISV-SNLPKLPKLKKLELSENRIFGGL 87 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-------------CCCC-SSCCCCSSCCEEEEESCCCCSCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-------------CCCh-hhhccCCCCCEEECcCCcCchHH
Confidence 4577888888888887 788777888888888888875 4444 456778888888888887766 4
Q ss_pred cccCCCCCCccEEeeeCCCCcccch--hhcCCCCcccEEeeccCCCccccCc----cCCCCCCccEEEeccCCCcc
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLF--EEIDQLRVLRTLSIVCCPRLISLPP----AIKYLSSLETLFLYKCESLD 372 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~----~l~~l~~L~~L~l~~~~~l~ 372 (504)
+..+.++++|++|++++| .+..++ ..++.+++|++|++++|. +..+|. .+..+++|++|++++|...+
T Consensus 88 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 444556888888888886 445544 677888888888888874 556665 67788888888888886544
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=6e-13 Score=120.09 Aligned_cols=128 Identities=23% Similarity=0.297 Sum_probs=93.8
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeeccccccccccc
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
+.|+.|++++|.+..+|. .+..+++|++|++++|. +..+ |..+..+++|++|++++|.+...++.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-------------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-------------ISELAPDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-------------CCEECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-------------CCCcCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence 567888888888876664 67778888888888775 4444 55677788888888888777666544
Q ss_pred -CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCC
Q 038400 306 -IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 306 -~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~ 369 (504)
+.++++|+.|++++|......|..++.+++|++|++++|. ++.++ ..+..+++|+.|++++|+
T Consensus 99 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 5778888888888866554456677888888888888875 44444 457778888888888775
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=3.8e-13 Score=131.14 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=39.6
Q ss_pred ccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCccCCCCCCccE
Q 038400 285 HLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLET 362 (504)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 362 (504)
.+++|++|++++|.+...+ ..+.++++|++|++++|. +..++ ..+..+++|+.|++++|......|..+..+++|+.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence 4455555555555444333 234555555555555543 22222 23455555555555555422222444555555555
Q ss_pred EEeccC
Q 038400 363 LFLYKC 368 (504)
Q Consensus 363 L~l~~~ 368 (504)
|++++|
T Consensus 141 L~L~~N 146 (361)
T 2xot_A 141 LYLSQN 146 (361)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 555554
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=9.7e-13 Score=119.51 Aligned_cols=127 Identities=28% Similarity=0.345 Sum_probs=101.0
Q ss_pred CcccEEEeCCCCcccc-CccccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeeccccccccccc
Q 038400 228 QFLRVLNLSESAIEVC-PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
++|++|++++|.+..+ |..+..+++|++|++++|. +..+|.. +..+++|++|++++|.+...++.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-------------l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-------------LGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-------------CCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 6788899999988866 5678888999999999875 5556543 47888899999998887766544
Q ss_pred -CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCC
Q 038400 306 -IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 306 -~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~ 369 (504)
+..+++|+.|++++| .+..+|..+..+++|++|++++|. +..++ ..+..+++|+.|++++|+
T Consensus 107 ~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred HhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 678899999999885 466788888889999999999875 55555 457888899999998875
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=8.2e-13 Score=119.18 Aligned_cols=129 Identities=20% Similarity=0.207 Sum_probs=105.1
Q ss_pred CcccEEEeCCCCccccC--ccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecccccccccc
Q 038400 228 QFLRVLNLSESAIEVCP--RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQES 304 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~ 304 (504)
..+++|++++|.++.++ ..+..+++|++|++++|. +..++. .+..+++|++|++++|.+...++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-------------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-------------ITDIEEGAFEGASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-------------CCEECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-------------CCEECHHHhCCCCCCCEEECCCCccCccCH
Confidence 45789999999998774 347889999999999885 555544 57889999999999888776654
Q ss_pred -cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 305 -GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 305 -~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
.+.++++|++|++++|......|..++.+++|++|++++|......|..+..+++|+.|++++|+
T Consensus 99 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 48899999999999976655557889999999999999986444447889999999999999885
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=2.4e-12 Score=116.11 Aligned_cols=125 Identities=19% Similarity=0.246 Sum_probs=101.2
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecccccccc-cccCCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQ-ESGIRS 308 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~-~~~~~~ 308 (504)
+.++++++.++.+|..+. .+|+.|++++|. +..+|. .+..+++|++|++++|.+... +..+.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-------------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-------------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-------------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-------------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence 678899999999998765 689999999885 555544 577899999999999887765 567899
Q ss_pred CCCccEEeeeCCCCcccchhh-cCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCc
Q 038400 309 LGSLRCLTISGCGDLEHLFEE-IDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESL 371 (504)
Q Consensus 309 l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l 371 (504)
+++|++|++++|. +..+|.. ++.+++|++|++++|......|..+..+++|+.|++++|..-
T Consensus 79 l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 79 LRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 9999999999964 5566654 688999999999998644444677889999999999988643
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=2.8e-12 Score=116.50 Aligned_cols=125 Identities=24% Similarity=0.270 Sum_probs=104.0
Q ss_pred cccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecccccccccc-cC
Q 038400 229 FLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQES-GI 306 (504)
Q Consensus 229 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~-~~ 306 (504)
..+.++.+++.+..+|..+. .+|++|++++|. +..+ |..+..+++|++|++++|.+...+. .+
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~-------------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 84 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQ-------------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVF 84 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCc-------------cCccCHHHhhCccCCcEEECCCCCCCCcChhhc
Confidence 35678899999999998765 899999999986 5555 5567899999999999999877664 46
Q ss_pred CCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCC
Q 038400 307 RSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCES 370 (504)
Q Consensus 307 ~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~ 370 (504)
..+++|+.|++++|. +..++ ..++.+++|++|++++|. +..+|..+..+++|+.|++++|..
T Consensus 85 ~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCC
T ss_pred ccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcC
Confidence 899999999999975 44555 457899999999999985 778999999999999999999853
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=2.4e-13 Score=114.67 Aligned_cols=125 Identities=21% Similarity=0.292 Sum_probs=95.6
Q ss_pred CCCcccEEEeCCCCcc--ccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccc-c
Q 038400 226 KSQFLRVLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSL-Q 302 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~ 302 (504)
..++|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.. .
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~-~~~~~l~~L~~L~Ls~n~i~~~~ 80 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-------------LTSI-ANLPKLNKLKKLELSDNRVSGGL 80 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-------------CCCC-TTCCCCTTCCEEECCSSCCCSCT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-------------CCCc-hhhhcCCCCCEEECCCCcccchH
Confidence 4577888999988887 788888888899999998875 4444 556778888888888888776 5
Q ss_pred cccCCCCCCccEEeeeCCCCcccch--hhcCCCCcccEEeeccCCCccccCc----cCCCCCCccEEEec
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLF--EEIDQLRVLRTLSIVCCPRLISLPP----AIKYLSSLETLFLY 366 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~----~l~~l~~L~~L~l~ 366 (504)
+..+..+++|++|++++|. +..++ ..++.+++|++|++++|. +..+|. .+..+++|+.|+++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 5555668888888888865 44443 778888888888888874 566654 57778888888765
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=2.3e-12 Score=113.53 Aligned_cols=124 Identities=20% Similarity=0.191 Sum_probs=102.0
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchh--hhccccCCeeeecccccccc-cccCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD--IRHLTSLRAFALTTKQKSLQ-ESGIR 307 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~-~~~~~ 307 (504)
++++++++.++.+|..+.. +|++|++++|. +..++.. +..+++|++|++++|.+... +..+.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-------------i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 75 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-------------LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-------------CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-------------CCccCCccccccCCCCCEEECCCCCCCCcCHhHcC
Confidence 7889999999999987754 89999999885 5555543 78899999999998887766 56788
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
++++|++|++++|......+..++.+++|++|++++|......|..+..+++|++|++++|+
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 99999999999976555445568899999999999987555667888999999999999885
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=2.6e-12 Score=110.61 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=71.8
Q ss_pred CCCCcCeeeccCCCCccccCcceeccccc--cCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccc
Q 038400 249 NLKHMRYLDLSGNSKIKKLPKSIYCLELE--ELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHL 326 (504)
Q Consensus 249 ~l~~L~~L~l~~~~~~~~lp~~~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 326 (504)
..++|+.|++++|. +. .+|..+..+++|++|++++|.+... ..+..+++|++|++++|.....+
T Consensus 22 ~~~~L~~L~l~~n~-------------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 22 TPAAVRELVLDNCK-------------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGL 87 (168)
T ss_dssp CTTSCSEEECCSCB-------------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCC
T ss_pred CcccCCEEECCCCC-------------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHH
Confidence 44678888888775 44 5666667778888888887776655 56777777788877776544446
Q ss_pred hhhcCCCCcccEEeeccCCCccccC--ccCCCCCCccEEEeccC
Q 038400 327 FEEIDQLRVLRTLSIVCCPRLISLP--PAIKYLSSLETLFLYKC 368 (504)
Q Consensus 327 ~~~~~~l~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L~l~~~ 368 (504)
|..++.+++|++|++++|. ++.+| ..+..+++|+.|++++|
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS
T ss_pred HHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC
Confidence 6666667777777777763 55544 45666666666666665
No 124
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.38 E-value=7.1e-13 Score=138.20 Aligned_cols=129 Identities=25% Similarity=0.363 Sum_probs=104.2
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhhh----hhc------------cCCchhHHHhhhhCCChhhHhh
Q 038400 14 NLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYL----EQK------------ESGILPILRLSYYQLPPHLKQC 77 (504)
Q Consensus 14 ~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~~----~~~------------~~~i~~~L~~sy~~L~~~~k~~ 77 (504)
.+.+.+.+|+++|+|+||||+.+|++|+... ..|+.. ... ...+..++..||+.|+++.|.|
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~ 382 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDY 382 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHH
Confidence 3456789999999999999999999998653 357651 111 1246789999999999999999
Q ss_pred hhhhcccCCCCccChHHHHHHHHHccCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEEeChhHHHHHH
Q 038400 78 VAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLAL 157 (504)
Q Consensus 78 fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~mhdl~~~~~~ 157 (504)
|+++|+||+++.|+...+...|.++ .+.+..++.+|+++++++... .+....|.||+++++++.
T Consensus 383 l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~----~~~~~~~~~H~lv~~~~~ 446 (591)
T 1z6t_A 383 YTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDR----NGKSFRYYLHDLQVDFLT 446 (591)
T ss_dssp HHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEE----ETTEEEEECCHHHHHHHH
T ss_pred HHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEec----CCCccEEEEcHHHHHHHH
Confidence 9999999999999999999999533 234677899999999998543 234568999999999998
Q ss_pred HHh
Q 038400 158 LVA 160 (504)
Q Consensus 158 ~~~ 160 (504)
...
T Consensus 447 ~~~ 449 (591)
T 1z6t_A 447 EKN 449 (591)
T ss_dssp HHT
T ss_pred hhh
Confidence 763
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=2.4e-12 Score=125.45 Aligned_cols=150 Identities=21% Similarity=0.193 Sum_probs=93.1
Q ss_pred CCeeeecccccccccc-cCC-CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEe
Q 038400 289 LRAFALTTKQKSLQES-GIR-SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFL 365 (504)
Q Consensus 289 L~~L~l~~~~~~~~~~-~~~-~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l 365 (504)
++.|++++|.+...+. .+. ++++|+.|++++|......+..+..+++|++|++++|. +..++ ..+..+++|+.|++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEEC
Confidence 4555555555444433 344 89999999999975444334678999999999999986 55555 46889999999999
Q ss_pred ccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCC----CC
Q 038400 366 YKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSL----KD 441 (504)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~ 441 (504)
++|....+. |..+ ..+++|+.|+|++| .++.+|... ..
T Consensus 120 ~~N~i~~~~-----------------------------------~~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 120 YNNHIVVVD-----------------------------------RNAF--EDMAQLQKLYLSQN-QISRFPVELIKDGNK 161 (361)
T ss_dssp CSSCCCEEC-----------------------------------TTTT--TTCTTCCEEECCSS-CCCSCCGGGTC----
T ss_pred CCCcccEEC-----------------------------------HHHh--CCcccCCEEECCCC-cCCeeCHHHhcCccc
Confidence 988643221 1122 34456666666655 344555432 45
Q ss_pred CCCcceEecccCccCCcCcc-CCCCCCC--cCeEeEeCCC
Q 038400 442 LEALETLFILGCPKLSSLSE-DMHHVTT--LKSLTIGGCP 478 (504)
Q Consensus 442 l~~L~~L~l~~c~~l~~l~~-~~~~l~~--L~~L~l~~c~ 478 (504)
+++|+.|++++| .++.+|. .+..++. |+.|++.++|
T Consensus 162 l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 162 LPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 666666666665 4555542 2334444 3566666654
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=6.6e-12 Score=110.64 Aligned_cols=123 Identities=24% Similarity=0.272 Sum_probs=101.8
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccc-ccCCCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE-SGIRSL 309 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l 309 (504)
++++++++.++.+|..+. .+|++|++++|. +..+|..+..+++|++|++++|.+...+ ..+.++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-------------i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-------------FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC-------------CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-------------CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCC
Confidence 678899999998887664 589999999886 6777878889999999999988877665 458899
Q ss_pred CCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCC
Q 038400 310 GSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCE 369 (504)
Q Consensus 310 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 369 (504)
++|++|++++|......+..++.+++|++|++++|. +..+|. .+..+++|+.|++++|+
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 999999999976544445678999999999999985 666665 57889999999999885
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=1.7e-13 Score=145.58 Aligned_cols=122 Identities=23% Similarity=0.239 Sum_probs=88.4
Q ss_pred HHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccc
Q 038400 219 FVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQ 298 (504)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 298 (504)
..+..+..+..|++|+|++|.+..+|..+..+++|++|+|++|. +..+|..+++|++|++|++++|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-------------l~~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-------------LTELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-------------CSCCCGGGGGGTTCCEEECTTSC
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-------------CcccChhhhCCCCCCEEeCcCCc
Confidence 34556777788888888888888888777788888888888775 56777777888888888888887
Q ss_pred cccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccC
Q 038400 299 KSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAI 354 (504)
Q Consensus 299 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l 354 (504)
+...|..+++|++|++|++++| .+..+|..++.+++|+.|+|++|.....+|..+
T Consensus 282 l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 282 LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 7777777788888888888875 456777778888888888888876544555444
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=7.1e-13 Score=115.17 Aligned_cols=130 Identities=20% Similarity=0.260 Sum_probs=86.0
Q ss_pred hcCCCcccEEEeCCCCccccCccccCCC-CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCPRKIGNLK-HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
+..+.+|++|++++|.++.+|. +..+. +|++|++++|. +..+ ..+..+++|++|++++|.+...
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-------------l~~~-~~l~~l~~L~~L~Ls~N~l~~~ 79 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-------------IRKL-DGFPLLRRLKTLLVNNNRICRI 79 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-------------CCEE-CCCCCCSSCCEEECCSSCCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-------------CCcc-cccccCCCCCEEECCCCccccc
Confidence 3455677777777777776654 33333 77777777764 3333 3456677777777777776665
Q ss_pred cccC-CCCCCccEEeeeCCCCcccchh--hcCCCCcccEEeeccCCCccccCcc----CCCCCCccEEEeccCCC
Q 038400 303 ESGI-RSLGSLRCLTISGCGDLEHLFE--EIDQLRVLRTLSIVCCPRLISLPPA----IKYLSSLETLFLYKCES 370 (504)
Q Consensus 303 ~~~~-~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~l~~l~~~----l~~l~~L~~L~l~~~~~ 370 (504)
++.+ ..+++|++|++++|. +..+|. .++.+++|+.|++++|. +..+|.. +..+++|+.|++++|..
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5444 677777777777753 455665 67777788888887775 5566653 66778888888777653
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=4.4e-13 Score=142.33 Aligned_cols=123 Identities=19% Similarity=0.113 Sum_probs=98.4
Q ss_pred EeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCcc
Q 038400 234 NLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLR 313 (504)
Q Consensus 234 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 313 (504)
++..+.+...|..+..+.+|+.|+|++|. +..+|..+..+++|++|++++|.+...|..+++|++|+
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 273 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQ-------------IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLR 273 (727)
T ss_dssp ---------------CCCCCCEEECTTSC-------------CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCC
T ss_pred cccccceecChhhhccCCCCcEEECCCCC-------------CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCC
Confidence 34445555567788999999999999986 77888888899999999999999888888899999999
Q ss_pred EEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCc
Q 038400 314 CLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESL 371 (504)
Q Consensus 314 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l 371 (504)
+|++++|. +..+|..++.+++|++|+|++|. ++.+|..++.+++|+.|+|++|...
T Consensus 274 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 274 VLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 99999975 55889999999999999999984 7899999999999999999998643
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=6e-12 Score=129.55 Aligned_cols=101 Identities=20% Similarity=0.187 Sum_probs=62.9
Q ss_pred CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcC
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEID 331 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 331 (504)
.|++|++++|. +..+|. ++.+++|+.|++++|.+...|..++++++|+.|++++|. +..+| .++
T Consensus 442 ~L~~L~Ls~n~-------------l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~ 505 (567)
T 1dce_A 442 DVRVLHLAHKD-------------LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVA 505 (567)
T ss_dssp TCSEEECTTSC-------------CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGT
T ss_pred CceEEEecCCC-------------CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccC
Confidence 36666666654 455554 666666666666666666556666666666666666643 34455 566
Q ss_pred CCCcccEEeeccCCCcccc--CccCCCCCCccEEEeccCC
Q 038400 332 QLRVLRTLSIVCCPRLISL--PPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 332 ~l~~L~~L~l~~~~~l~~l--~~~l~~l~~L~~L~l~~~~ 369 (504)
.+++|+.|++++|. ++.+ |..++.+++|+.|++++|.
T Consensus 506 ~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 506 NLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp TCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 66666666666654 4444 5666666666666666664
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=1.8e-12 Score=109.19 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=100.3
Q ss_pred CCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccccc-
Q 038400 200 LGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE- 278 (504)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~- 278 (504)
.++++.|.++++... ....+..+..+++|++|++++|.+..+ ..++.+++|++|++++|. +..
T Consensus 16 ~~~l~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-------------i~~~ 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-------------VSGG 79 (149)
T ss_dssp GGGCSEEECTTCBCB--TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-------------CCSC
T ss_pred CccCeEEEccCCcCC--hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-------------ccch
Confidence 467888888876543 111233467889999999999999877 778899999999999886 555
Q ss_pred CchhhhccccCCeeeeccccccccc--ccCCCCCCccEEeeeCCCCcccchh----hcCCCCcccEEeecc
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSLQE--SGIRSLGSLRCLTISGCGDLEHLFE----EIDQLRVLRTLSIVC 343 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~ 343 (504)
+|..+..+++|++|++++|.+...+ ..+..+++|++|++++|. +..++. .++.+++|+.|++++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 7777778999999999999887653 678999999999999974 455553 688899999998763
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=1e-11 Score=107.76 Aligned_cols=130 Identities=16% Similarity=0.153 Sum_probs=104.5
Q ss_pred hcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccc
Q 038400 197 LSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLEL 276 (504)
Q Consensus 197 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l 276 (504)
+.++.+|+.|.++++..... +......++|++|++++|.++.+ ..+..+++|++|++++|. +
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i----~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-------------l 76 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-------------I 76 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC----CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-------------C
T ss_pred cCCcCCceEEEeeCCCCchh----HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-------------c
Confidence 45678899999987765522 22223334999999999999987 688999999999999986 6
Q ss_pred ccCchhh-hccccCCeeeecccccccccc--cCCCCCCccEEeeeCCCCcccchhh----cCCCCcccEEeeccCC
Q 038400 277 EELPKDI-RHLTSLRAFALTTKQKSLQES--GIRSLGSLRCLTISGCGDLEHLFEE----IDQLRVLRTLSIVCCP 345 (504)
Q Consensus 277 ~~lp~~i-~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~----~~~l~~L~~L~l~~~~ 345 (504)
..+|..+ ..+++|++|++++|.+...+. .+..+++|+.|++++|. +..+|.. ++.+++|+.|++++|.
T Consensus 77 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 77 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666555 889999999999999877665 78899999999999975 4566664 8899999999999875
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.9e-10 Score=99.76 Aligned_cols=123 Identities=24% Similarity=0.337 Sum_probs=90.8
Q ss_pred ccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeeccccccccccc-CC
Q 038400 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKSLQESG-IR 307 (504)
Q Consensus 230 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~-~~ 307 (504)
.+.++++++.+..+|..+. .+|++|++++|. +..+|.. +..+++|++|++++|.+...++. +.
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNK-------------LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSC-------------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCc-------------ccEeCHHHhcCcccccEEECCCCcceEeChhHcc
Confidence 4677888888888776543 688888888875 4455443 46788888888888877665543 57
Q ss_pred CCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccCcc-CCCCCCccEEEeccCC
Q 038400 308 SLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLPPA-IKYLSSLETLFLYKCE 369 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~~~ 369 (504)
.+++|+.|++++|. +..+| ..++.+++|++|++++|. ++.+|.. +..+++|++|++++|+
T Consensus 74 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 74 KLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 88889999988865 44444 446788899999998874 5566654 5778889999998875
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=1.1e-10 Score=102.77 Aligned_cols=105 Identities=17% Similarity=0.242 Sum_probs=89.6
Q ss_pred CcccEEEeCCCCccccCcc--ccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecccccccccc
Q 038400 228 QFLRVLNLSESAIEVCPRK--IGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQES 304 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~ 304 (504)
..|++|++++|.+..++.. ++.+++|++|++++|. +..+ |..+..+++|++|++++|.+...++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 95 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-------------LTGIEPNAFEGASHIQELQLGENKIKEISN 95 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-------------CCCBCTTTTTTCTTCCEEECCSCCCCEECS
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-------------CCCcCHhHcCCcccCCEEECCCCcCCccCH
Confidence 3899999999999988764 8899999999999886 5555 5678899999999999998877654
Q ss_pred -cCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCC
Q 038400 305 -GIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 305 -~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 345 (504)
.+.++++|++|++++|......|..++.+++|++|++++|.
T Consensus 96 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 48899999999999987666668889999999999999986
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=8.8e-13 Score=116.97 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=99.0
Q ss_pred HhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc
Q 038400 223 CISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
.+..+++|++|++++|.+..+| .+..+++|++|++++|. +..+|..+..+++|++|++++|.+...
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-------------l~~l~~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-------------IKKIENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-------------ECSCSSHHHHHHHCSEEEEEEEECCCH
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-------------cccccchhhcCCcCCEEECcCCcCCcC
Confidence 5778889999999999988888 88889999999999875 667777777889999999998887776
Q ss_pred cccCCCCCCccEEeeeCCCCcccch--hhcCCCCcccEEeeccCCCccccCc----------cCCCCCCccEEE
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLF--EEIDQLRVLRTLSIVCCPRLISLPP----------AIKYLSSLETLF 364 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~----------~l~~l~~L~~L~ 364 (504)
+ .+..+++|++|++++|. +..++ ..+..+++|++|++++|......|. .+..+++|+.|+
T Consensus 109 ~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp H-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred C-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5 67888899999998864 44444 3688899999999998863333332 266788888886
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=2e-10 Score=101.10 Aligned_cols=104 Identities=25% Similarity=0.404 Sum_probs=87.1
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecccccccccc-c
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQES-G 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~-~ 305 (504)
..|++|++++|.++.+|..+..+++|++|++++|. +..++. .+..+++|++|++++|.+...++ .
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-------------i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-------------ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-------------CCEeCHhHccCCCCCCEEECCCCccCEeCHHH
Confidence 57899999999999999999999999999999885 555553 47889999999999988776654 5
Q ss_pred CCCCCCccEEeeeCCCCcccchh-hcCCCCcccEEeeccCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFE-EIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~ 345 (504)
+.++++|++|++++|. +..+|. .+..+++|+.|++++|+
T Consensus 98 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred hCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 8899999999999965 455554 58889999999999886
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=2.5e-09 Score=102.60 Aligned_cols=130 Identities=13% Similarity=0.174 Sum_probs=59.5
Q ss_pred CCCeeEEeeecCCcccchHHHHHHhcC-CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 200 LGRVRTIVFSTDDEKISQSFVESCISK-SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
+.+++.|.+.+.- ...... .+.. +++|++|||++|.+......-+.++.++++.+..+ .+|.... -..
T Consensus 24 ~~~l~~L~l~g~i---~~~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF---~~~ 92 (329)
T 3sb4_A 24 ANSITHLTLTGKL---NAEDFR-HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAF---SNV 92 (329)
T ss_dssp HHHCSEEEEEEEE---CHHHHH-HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTT---EEE
T ss_pred hCceeEEEEeccc---cHHHHH-HHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHh---ccc
Confidence 4567777777431 111122 2333 78899999998888721111122222344444332 1221110 000
Q ss_pred CchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEe
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLS 340 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 340 (504)
.|.....+++|+.+++.++........|.++++|+.|++..+.....-+..+....++..+.
T Consensus 93 ~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp ETTEEEECTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred ccccccccCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 11111226666776666633333344566677777777766443222233344444444443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=1e-11 Score=110.06 Aligned_cols=123 Identities=24% Similarity=0.235 Sum_probs=95.9
Q ss_pred ccEEEeCCC--CccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCC
Q 038400 230 LRVLNLSES--AIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIR 307 (504)
Q Consensus 230 L~~L~l~~~--~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 307 (504)
|+...+.++ .++.+|..+..+++|++|++++|. +..+| .+..+++|++|++++|.+...+..+.
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-------------l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~ 90 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-------------IEKIS-SLSGMENLRILSLGRNLIKKIENLDA 90 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-------------ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHH
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-------------Ccccc-ccccCCCCCEEECCCCCcccccchhh
Confidence 344444443 344556688999999999999875 66677 78899999999999998887776677
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc--cCCCCCCccEEEeccCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP--AIKYLSSLETLFLYKCE 369 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~l~~l~~L~~L~l~~~~ 369 (504)
.+++|+.|++++| .+..+| .++.+++|++|++++|. +..++. .+..+++|++|++++|.
T Consensus 91 ~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 91 VADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 7889999999997 455566 68889999999999885 555443 67888999999998885
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=1.3e-09 Score=93.62 Aligned_cols=100 Identities=22% Similarity=0.325 Sum_probs=59.4
Q ss_pred ccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeeccccccccccc-CC
Q 038400 230 LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQESG-IR 307 (504)
Q Consensus 230 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~-~~ 307 (504)
.++++++++.++.+|..+. .+|++|++++|. +..+ |..+..+++|++|++++|.+...++. +.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-------------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-------------ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-------------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCc-------------CCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 4677888888877777663 677888887765 4444 33455666666666666665544433 35
Q ss_pred CCCCccEEeeeCCCCcccchh-hcCCCCcccEEeeccCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFE-EIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~ 345 (504)
++++|++|++++|. +..+|. .++.+++|++|++++|+
T Consensus 76 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 76 KLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 56666666665543 333332 35555555555555543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=1.7e-09 Score=93.26 Aligned_cols=99 Identities=20% Similarity=0.323 Sum_probs=58.0
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeeccccccccccc-CCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTTKQKSLQESG-IRS 308 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~-~~~ 308 (504)
+.++++++.+..+|..+. .+|++|++++|. +..+ |..+..+++|++|++++|.+...++. +.+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-------------ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-------------ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 567777777777776654 677777777764 4444 33455666666666666665554433 355
Q ss_pred CCCccEEeeeCCCCcccchhh-cCCCCcccEEeeccCC
Q 038400 309 LGSLRCLTISGCGDLEHLFEE-IDQLRVLRTLSIVCCP 345 (504)
Q Consensus 309 l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~ 345 (504)
+++|++|++++|. +..+|.. ++.+++|++|++++|+
T Consensus 80 l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 80 LTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 6666666665542 3334332 5555555555555553
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=2.1e-09 Score=93.08 Aligned_cols=105 Identities=22% Similarity=0.340 Sum_probs=82.8
Q ss_pred CCcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeecccccccccc
Q 038400 227 SQFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQKSLQES 304 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~ 304 (504)
.+.|++|++++|.+..+|. .+..+++|++|++++|. +..+|.. +..+++|++|++++|.+...++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 93 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-------------IQSLPDGVFDKLTKLTILYLHENKLQSLPN 93 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-------------ceEeChhHccCCCccCEEECCCCCccccCH
Confidence 3678999999999887765 46888999999999875 5555544 5788999999999888776654
Q ss_pred c-CCCCCCccEEeeeCCCCcccchhh-cCCCCcccEEeeccCC
Q 038400 305 G-IRSLGSLRCLTISGCGDLEHLFEE-IDQLRVLRTLSIVCCP 345 (504)
Q Consensus 305 ~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~ 345 (504)
. +.++++|++|++++|. +..+|.. +..+++|++|++++|+
T Consensus 94 ~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 4 6889999999999864 5556654 5789999999999886
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=8.4e-09 Score=88.59 Aligned_cols=101 Identities=28% Similarity=0.299 Sum_probs=81.6
Q ss_pred CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchh-h
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFE-E 329 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~ 329 (504)
..+.++++++. +..+|..+. ++|++|++++|.+... +..+.++++|++|++++|. +..+|. .
T Consensus 10 ~~~~l~~s~n~-------------l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~ 73 (170)
T 3g39_A 10 SGTTVDCSGKS-------------LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGV 73 (170)
T ss_dssp ETTEEECTTSC-------------CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT
T ss_pred CCCEEEeCCCC-------------cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhh
Confidence 35788998875 666666553 7899999999988776 5568999999999999975 555654 4
Q ss_pred cCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCC
Q 038400 330 IDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCE 369 (504)
Q Consensus 330 ~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 369 (504)
++.+++|++|++++|. ++.+|. .+..+++|+.|++++|+
T Consensus 74 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 6899999999999985 666665 58899999999999985
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=1.2e-07 Score=93.18 Aligned_cols=244 Identities=14% Similarity=0.173 Sum_probs=154.5
Q ss_pred hhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceec
Q 038400 195 SLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYC 273 (504)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 273 (504)
..|.++ +|+.+.+..+ .. .+....|.+ ..|+.+.+.. .+..++ ..+.++.+|+.+++.+|.
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~---~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~----------- 191 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LK---SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK----------- 191 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CC---EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-----------
T ss_pred hhcccC-CccEEEeCCC-cc---EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-----------
Confidence 345554 6888877643 22 122234555 3688888876 555554 567888999999998764
Q ss_pred cccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCcccc-C
Q 038400 274 LELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISL-P 351 (504)
Q Consensus 274 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l-~ 351 (504)
+..+|.......+|+.+.+..+........+.++++|+.+++.. .+..+. ..+.+ .+|+.+.+.. .++.+ .
T Consensus 192 --l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~ 264 (401)
T 4fdw_A 192 --ITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPN--GVTNIAS 264 (401)
T ss_dssp --CSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEET--TCCEECT
T ss_pred --ceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCC--CccEECh
Confidence 55555554456788888888665555566788899999999876 344444 34444 7888888854 35555 4
Q ss_pred ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCC
Q 038400 352 PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPN 431 (504)
Q Consensus 352 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 431 (504)
..+.++++|+.+.+.++..-.... .. ..........+|+.+.+.+ .++.++...+ ..+++|+.+.+.+.
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~--~~----I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~~-- 333 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPE--AM----IHPYCLEGCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPAN-- 333 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTT--CE----ECTTTTTTCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECTT--
T ss_pred hHhhCCCCCCEEEeCCccccCCcc--cE----ECHHHhhCCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECcc--
Confidence 567888999999887754220000 00 0022333444788888774 4666655442 45688888888553
Q ss_pred CCccC-cCCCCCCCcceEecccCccCCcCc-cCCCCCC-CcCeEeEeC
Q 038400 432 FMALP-RSLKDLEALETLFILGCPKLSSLS-EDMHHVT-TLKSLTIGG 476 (504)
Q Consensus 432 l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~-~L~~L~l~~ 476 (504)
++.+. ..|.++ +|+.+.+.++. +..++ ..+.+++ +++.|++-.
T Consensus 334 l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 334 VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECG
T ss_pred ccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCH
Confidence 56654 457777 89999888874 33333 3455663 677887755
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=1.5e-08 Score=87.40 Aligned_cols=101 Identities=22% Similarity=0.256 Sum_probs=81.7
Q ss_pred cCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCCCcccchhh-c
Q 038400 253 MRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCGDLEHLFEE-I 330 (504)
Q Consensus 253 L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~-~ 330 (504)
-+.++++++. +..+|..+. ++|++|++++|.+... +..+.++++|+.|++++| .+..+|.. +
T Consensus 14 ~~~l~~~~n~-------------l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~ 77 (174)
T 2r9u_A 14 QTLVNCQNIR-------------LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVF 77 (174)
T ss_dssp SSEEECCSSC-------------CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CcEEEeCCCC-------------CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHh
Confidence 3678888774 666666554 7899999999988776 456899999999999996 56667654 5
Q ss_pred CCCCcccEEeeccCCCccccCcc-CCCCCCccEEEeccCCC
Q 038400 331 DQLRVLRTLSIVCCPRLISLPPA-IKYLSSLETLFLYKCES 370 (504)
Q Consensus 331 ~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~~~~ 370 (504)
+.+++|++|++++|. +..+|.. +..+++|+.|++++|+.
T Consensus 78 ~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred CCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCCc
Confidence 899999999999985 6677764 88999999999999863
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=3.7e-08 Score=94.39 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=53.6
Q ss_pred CccceEEEccCCCcccchhhhhcCCCCCcc-EEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCcc-CCCCCCCc
Q 038400 393 PHLRRVVIGEITQLLELPQWLLQGSTDTLQ-NLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSE-DMHHVTTL 469 (504)
Q Consensus 393 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 469 (504)
.+|+.+.+.+ +++.++...+ ..+++|+ .+.+.+ .++.++ ..|.++++|+.+++.++ .++.++. .|.++++|
T Consensus 250 ~~L~~l~l~~--ni~~I~~~aF-~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 250 KYLLKIKLPH--NLKTIGQRVF-SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPS 323 (329)
T ss_dssp TTCCEEECCT--TCCEECTTTT-TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCC
T ss_pred CCCCEEECCc--ccceehHHHh-hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcch
Confidence 3555665554 2555554432 5677888 888877 566664 56889999999999775 6777765 67788999
Q ss_pred CeEeE
Q 038400 470 KSLTI 474 (504)
Q Consensus 470 ~~L~l 474 (504)
+.++.
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 98863
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=1.9e-06 Score=84.56 Aligned_cols=220 Identities=9% Similarity=0.106 Sum_probs=149.6
Q ss_pred hhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecc
Q 038400 195 SLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCL 274 (504)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~ 274 (504)
..|.++ +|+.+.+.. ... .+....|.++.+|+.+++.++.++.+|.......+|+.+.+..+
T Consensus 152 ~aF~~~-~L~~i~lp~-~l~---~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~------------- 213 (401)
T 4fdw_A 152 MAFFNS-TVQEIVFPS-TLE---QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT------------- 213 (401)
T ss_dssp TTTTTC-CCCEEECCT-TCC---EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-------------
T ss_pred HhcCCC-CceEEEeCC-Ccc---EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-------------
Confidence 345554 688888874 222 22234688999999999999999988876656789999999753
Q ss_pred ccccCch-hhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccc-hhhcCCCCcccEEeeccCCCc----c
Q 038400 275 ELEELPK-DIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHL-FEEIDQLRVLRTLSIVCCPRL----I 348 (504)
Q Consensus 275 ~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l----~ 348 (504)
+..++. .+.++++|+.+.+..+........+.+ .+|+.+.+.. .+..+ ...+..+++|+.+.+.++... .
T Consensus 214 -l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 214 -LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp -CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred -hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence 444433 356788999999987654444555666 7899999954 34555 357788999999999875422 1
Q ss_pred cc-CccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEec
Q 038400 349 SL-PPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLII 427 (504)
Q Consensus 349 ~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 427 (504)
.+ +..+..|++|+.+.+... ++... ........+|+.+.|.. .++.++...+ ..+ +|+.+.+.
T Consensus 290 ~I~~~aF~~c~~L~~l~l~~~--i~~I~----------~~aF~~c~~L~~l~lp~--~l~~I~~~aF-~~~-~L~~l~l~ 353 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIPES--IRILG----------QGLLGGNRKVTQLTIPA--NVTQINFSAF-NNT-GIKEVKVE 353 (401)
T ss_dssp EECTTTTTTCTTCCEECCCTT--CCEEC----------TTTTTTCCSCCEEEECT--TCCEECTTSS-SSS-CCCEEEEC
T ss_pred EECHHHhhCCccCCeEEeCCc--eEEEh----------hhhhcCCCCccEEEECc--cccEEcHHhC-CCC-CCCEEEEc
Confidence 23 356888999999988742 32210 22233345899999865 5666665543 345 89999998
Q ss_pred cCCCCCcc-CcCCCCCC-CcceEecccC
Q 038400 428 DCPNFMAL-PRSLKDLE-ALETLFILGC 453 (504)
Q Consensus 428 ~~~~l~~l-~~~~~~l~-~L~~L~l~~c 453 (504)
++. ...+ +..+.+++ +++.|.+...
T Consensus 354 ~n~-~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 354 GTT-PPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CSS-CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCC-CcccccccccCCCCCccEEEeCHH
Confidence 874 3333 34566665 6788877653
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=1.5e-08 Score=98.51 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=7.5
Q ss_pred hcCCCCcccEEeeccC
Q 038400 329 EIDQLRVLRTLSIVCC 344 (504)
Q Consensus 329 ~~~~l~~L~~L~l~~~ 344 (504)
.+...++|++|++++|
T Consensus 206 ~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 206 QLDRNRQLQELNVAYN 221 (372)
T ss_dssp HGGGCSCCCEEECCSS
T ss_pred HHhcCCCcCeEECCCC
Confidence 3344444555555544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=1.1e-07 Score=91.76 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=47.0
Q ss_pred hcCCCcccEEEeCC-CCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecccccc
Q 038400 224 ISKSQFLRVLNLSE-SAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKS 300 (504)
Q Consensus 224 ~~~~~~L~~L~l~~-~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~ 300 (504)
+..+.+|++|+|++ |.+..+| ..++.|.+|++|+|++|. +..+|. .+.+|++|++|+|++|.+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-------------l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-------------LRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-------------CCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-------------cceeCHHHhcCCcCCCEEeCCCCccc
Confidence 55566666666664 6666555 346666666666666654 333332 3456666666666666655
Q ss_pred cccccCCCCCCccEEeeeCC
Q 038400 301 LQESGIRSLGSLRCLTISGC 320 (504)
Q Consensus 301 ~~~~~~~~l~~L~~L~l~~~ 320 (504)
..++.+.....|+.|++.+|
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSS
T ss_pred eeCHHHcccCCceEEEeeCC
Confidence 55443333333666666654
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.55 E-value=2e-07 Score=90.00 Aligned_cols=99 Identities=20% Similarity=0.216 Sum_probs=68.8
Q ss_pred EEEeCCC-CccccCccccCCCCcCeeeccC-CCCccccCcceeccccccCc-hhhhccccCCeeeecccccccccc-cCC
Q 038400 232 VLNLSES-AIEVCPRKIGNLKHMRYLDLSG-NSKIKKLPKSIYCLELEELP-KDIRHLTSLRAFALTTKQKSLQES-GIR 307 (504)
Q Consensus 232 ~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~-~~~~~~lp~~~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~-~~~ 307 (504)
.++.+++ .++.+|. +..+.+|++|+|++ |. +..+| ..+..|++|++|++++|.+...++ .|.
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-------------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 77 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQH-------------LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-------------CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-------------CCCcChhHhccccCCCEEECCCCccceeCHHHhc
Confidence 4577777 7888888 88888888888885 54 55554 346778888888888777666543 467
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 345 (504)
+|++|+.|+|++| .+..+|..+.....|+.|++.+|.
T Consensus 78 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 78 FTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCcCCCEEeCCCC-ccceeCHHHcccCCceEEEeeCCC
Confidence 7888888888775 345555443333337788877765
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.52 E-value=1.4e-08 Score=98.08 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=36.0
Q ss_pred CCccceEEEccCCCcccchh-hhhcCCCCCccEEEeccCCCCCc-----cCcCCCCCCCcceEecccCc
Q 038400 392 RPHLRRVVIGEITQLLELPQ-WLLQGSTDTLQNLLIIDCPNFMA-----LPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 392 ~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~ 454 (504)
+++|+.|.+.+|......+. +.....+++|+.|+|+.| .+.. ++..+..+++|+.|++++|.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 34566666655432221211 121235688999999765 3443 34444567889999998874
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.49 E-value=6.8e-08 Score=93.95 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=109.7
Q ss_pred CeEEEEEEcCCCCccc---hhhhhc-CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcccc-----Cccc
Q 038400 177 RVRHLSFAAANASRKD---FSSLLS-DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVC-----PRKI 247 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~---~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-----p~~~ 247 (504)
.++.+++..+.+.... +...+. ...+|+.|+++++... ..........+.+|+.|+|++|.++.. ...+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4677888777764332 222333 3379999999987643 333344444566899999999998732 2223
Q ss_pred -cCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc-----cccCCCCCCccEEeeeCCC
Q 038400 248 -GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ-----ESGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 248 -~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~ 321 (504)
....+|++|++++|. ++. .....++..+..+++|++|++++|.+... ...+...++|++|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~-------~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTA-------AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHH-------HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCC-CCh-------HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 356889999999985 321 11344666677889999999999886543 3446777899999999986
Q ss_pred Ccc----cchhhcCCCCcccEEeeccCC
Q 038400 322 DLE----HLFEEIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 322 ~l~----~~~~~~~~l~~L~~L~l~~~~ 345 (504)
.-. .++..+...++|++|++++|.
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 433 344556667889999999986
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.48 E-value=1.8e-07 Score=90.26 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=28.2
Q ss_pred CchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcC--CCCcccEEeec
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEID--QLRVLRTLSIV 342 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~l~~L~~L~l~ 342 (504)
++..+..+++|+.|+++++.....++ + .+++|++|++..|.........+. .+++|++|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 33444555666666665542111111 2 255666666655442222222222 45555555553
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.07 E-value=0.0001 Score=72.12 Aligned_cols=217 Identities=12% Similarity=0.074 Sum_probs=123.9
Q ss_pred HHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccc
Q 038400 222 SCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSL 301 (504)
Q Consensus 222 ~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~ 301 (504)
..|.++.+|+.+.+.++...--...+.++.+|+.+.+..+ ++.++. ..+.++..|+.+.+..+....
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~-----------~~F~~~~~L~~i~~~~~~~~i 222 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRD-----------YCFAECILLENMEFPNSLYYL 222 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECT-----------TTTTTCTTCCBCCCCTTCCEE
T ss_pred hhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCc-----------hhhccccccceeecCCCceEe
Confidence 3577888888888876543322345677888888887653 222221 124456666666665443322
Q ss_pred ccccCCCCCCccEEeeeCCCCcccc-hhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccccccc
Q 038400 302 QESGIRSLGSLRCLTISGCGDLEHL-FEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEME 380 (504)
Q Consensus 302 ~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 380 (504)
. ......++|+.+.+... ...+ ...+..+.+|+.+.+..+. ..--...+..+..++.+...... +.
T Consensus 223 ~-~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~---i~------ 289 (394)
T 4fs7_A 223 G-DFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI---VP------ 289 (394)
T ss_dssp C-TTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE---EC------
T ss_pred e-hhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee---ec------
Confidence 2 23344566777766542 2222 2345566777777775531 22223345566666666554321 00
Q ss_pred CCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcC
Q 038400 381 GEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSL 459 (504)
Q Consensus 381 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l 459 (504)
........+|+.+.+.+ +++.++...+ ..+.+|+.+++.+ .++.+. ..|.++.+|+.+.+... ++.+
T Consensus 290 -----~~~F~~~~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I 357 (394)
T 4fs7_A 290 -----EKTFYGCSSLTEVKLLD--SVKFIGEEAF-ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKI 357 (394)
T ss_dssp -----TTTTTTCTTCCEEEECT--TCCEECTTTT-TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEE
T ss_pred -----ccccccccccccccccc--ccceechhhh-cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEe
Confidence 11223334677777654 4555554432 4567888888754 356664 45778888888888653 6666
Q ss_pred cc-CCCCCCCcCeEeEeC
Q 038400 460 SE-DMHHVTTLKSLTIGG 476 (504)
Q Consensus 460 ~~-~~~~l~~L~~L~l~~ 476 (504)
+. .|.++++|+.+++..
T Consensus 358 ~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTTBTTCTTCCEEEEEG
T ss_pred hHHHhhCCCCCCEEEECC
Confidence 54 567888888888854
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.98 E-value=4.7e-06 Score=72.30 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHhcCCCcccEEEeCCC-Ccc-----ccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeee
Q 038400 220 VESCISKSQFLRVLNLSES-AIE-----VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFA 293 (504)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~-~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~ 293 (504)
+...+...+.|++|+|++| .+. .+...+...++|++|+|++|. ++ ......+...+...+.|++|+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~-------~~g~~~l~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SN-------DPVAFALAEMLKVNNTLKSLN 99 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CC-------HHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CC-------hHHHHHHHHHHHhCCCcCEEE
Confidence 3344555556666666665 543 233344455556666666553 11 011122333344445555555
Q ss_pred ecccccccc-----cccCCCCCCccEEee
Q 038400 294 LTTKQKSLQ-----ESGIRSLGSLRCLTI 317 (504)
Q Consensus 294 l~~~~~~~~-----~~~~~~l~~L~~L~l 317 (504)
+++|.+... ...+...++|++|++
T Consensus 100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 100 VESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 555544321 123344445555555
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=5.1e-06 Score=70.46 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=33.9
Q ss_pred CCCCCCccEEeeeCCCCcccc-hhhcCCC----CcccEEeeccCCCcccc-CccCCCCCCccEEEeccCCCc
Q 038400 306 IRSLGSLRCLTISGCGDLEHL-FEEIDQL----RVLRTLSIVCCPRLISL-PPAIKYLSSLETLFLYKCESL 371 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~-~~~~~~l----~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~~~~l 371 (504)
+.++++|++|++++|..++.- ...++.+ ++|++|+|++|..++.- -..+..+++|++|++++|+.+
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 345666666666666544431 1233332 25666666666554421 012344566666666666544
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=6.6e-06 Score=69.77 Aligned_cols=39 Identities=23% Similarity=0.468 Sum_probs=18.1
Q ss_pred CcceEecccCccCCcCc-cCCCCCCCcCeEeEeCCCchhh
Q 038400 444 ALETLFILGCPKLSSLS-EDMHHVTTLKSLTIGGCPALSE 482 (504)
Q Consensus 444 ~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~ 482 (504)
+|++|+|++|+.++.-. ..+..+++|+.|++++|+.+++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 45555555555444311 1123455555555555555443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.88 E-value=9.7e-06 Score=70.28 Aligned_cols=121 Identities=7% Similarity=0.085 Sum_probs=80.9
Q ss_pred hhhhhcCCCCeeEEeeecC-Cccc-chHHHHHHhcCCCcccEEEeCCCCcc-----ccCccccCCCCcCeeeccCCCCcc
Q 038400 193 FSSLLSDLGRVRTIVFSTD-DEKI-SQSFVESCISKSQFLRVLNLSESAIE-----VCPRKIGNLKHMRYLDLSGNSKIK 265 (504)
Q Consensus 193 ~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~ 265 (504)
+...+...+.|+.|.++++ .++. ....+...+...+.|++|+|++|.+. .+...+...++|++|++++|. ++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 4556777889999999876 6542 12334455677889999999999886 244556667889999999884 22
Q ss_pred ccCcceeccccccCchhhhccccCCeeee--cccccccc-----cccCCCCCCccEEeeeCCC
Q 038400 266 KLPKSIYCLELEELPKDIRHLTSLRAFAL--TTKQKSLQ-----ESGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 266 ~lp~~~~~~~l~~lp~~i~~l~~L~~L~l--~~~~~~~~-----~~~~~~l~~L~~L~l~~~~ 321 (504)
......+...+...+.|++|++ ++|.+... ...+...++|++|++++|.
T Consensus 107 -------~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 -------GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -------HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -------HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 1123345666777888999999 66765432 1233444667777776653
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.86 E-value=0.00066 Score=66.37 Aligned_cols=192 Identities=12% Similarity=0.164 Sum_probs=118.0
Q ss_pred ccccCCCCcCeeeccCCCCccccCcceeccccccCch-hhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCc
Q 038400 245 RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPK-DIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDL 323 (504)
Q Consensus 245 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 323 (504)
..+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+........+.++..|+.+.+... .
T Consensus 156 ~aF~~c~~L~~i~l~~~--------------~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~--~ 219 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS--------------METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNS--L 219 (394)
T ss_dssp TTTTTCTTCCEEECCTT--------------CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTT--C
T ss_pred hhhcccCCCcEEecCCc--------------cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCC--c
Confidence 45777888888888753 333333 355778888888876655555566788888888877653 2
Q ss_pred ccchhhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEcc
Q 038400 324 EHLFEEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGE 402 (504)
Q Consensus 324 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 402 (504)
..+........+|+.+.+... ...+. ..+..+.+|+.+.+..+.. .+. .........++.+.+..
T Consensus 220 ~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~-~i~-----------~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 220 YYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKL-RIG-----------GSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTC-EEC-----------SCTTTTCTTCCEEEECS
T ss_pred eEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcc-eee-----------ccccccccccceeccCc
Confidence 233333444577888877542 33333 3466778888888765421 110 11222233555555443
Q ss_pred CCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCcc-CCCCCCCcCeEeEe
Q 038400 403 ITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSE-DMHHVTTLKSLTIG 475 (504)
Q Consensus 403 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~ 475 (504)
. .++...+ ..+.+|+.+.+.+ .++.++ ..+.++.+|+.+.|.. .++.++. .|.++.+|+.+.+.
T Consensus 286 ~----~i~~~~F-~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 286 V----IVPEKTF-YGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp S----EECTTTT-TTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred e----eeccccc-ccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 1 1222221 4567888888865 366664 3477889999999864 3666653 57788888888774
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.79 E-value=0.0013 Score=64.34 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=56.0
Q ss_pred CCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCcc-CCCCCCCc
Q 038400 392 RPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSE-DMHHVTTL 469 (504)
Q Consensus 392 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 469 (504)
..+|+.+.+.. .++.++...+ ..+.+|+.+.+.+ .++.+. ..|.++.+|+.+.|.. .++.++. .|.++++|
T Consensus 287 c~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 287 CPALQDIEFSS--RITELPESVF-AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTAL 359 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTC
T ss_pred ccccccccCCC--cccccCceee-cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCC
Confidence 34677777653 5666665543 4567888888864 366664 4578889999999964 4666654 57889999
Q ss_pred CeEeEeCCC
Q 038400 470 KSLTIGGCP 478 (504)
Q Consensus 470 ~~L~l~~c~ 478 (504)
+.+++.+..
T Consensus 360 ~~i~~~~~~ 368 (394)
T 4gt6_A 360 NNIEYSGSR 368 (394)
T ss_dssp CEEEESSCH
T ss_pred CEEEECCce
Confidence 999998753
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.67 E-value=9.2e-06 Score=74.26 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=8.8
Q ss_pred hhhccccCCeeeecccccc
Q 038400 282 DIRHLTSLRAFALTTKQKS 300 (504)
Q Consensus 282 ~i~~l~~L~~L~l~~~~~~ 300 (504)
.+..+++|+.|++++|.+.
T Consensus 191 ~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 191 IVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HHHHSTTCCEEECTTSCCC
T ss_pred HHhhCCCCCEEECCCCccC
Confidence 3344445555555444433
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=1.7e-05 Score=72.44 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=46.0
Q ss_pred HHHhcCCCcccEEEeCCCCcccc---CccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccc--cCCeeeec
Q 038400 221 ESCISKSQFLRVLNLSESAIEVC---PRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLT--SLRAFALT 295 (504)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~--~L~~L~l~ 295 (504)
.....+++.|+.|+|++|.+..+ |..+..+++|++|+|++|. +..+ ..+..+. +|++|+++
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-------------i~~~-~~l~~l~~l~L~~L~L~ 228 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-------------LKSE-RELDKIKGLKLEELWLD 228 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-------------CCSG-GGGGGGTTSCCSEEECT
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-------------cCCc-hhhhhcccCCcceEEcc
Confidence 33446789999999999999854 4567789999999999985 3333 2233333 66666666
Q ss_pred ccccc
Q 038400 296 TKQKS 300 (504)
Q Consensus 296 ~~~~~ 300 (504)
+|.+.
T Consensus 229 ~Npl~ 233 (267)
T 3rw6_A 229 GNSLC 233 (267)
T ss_dssp TSTTG
T ss_pred CCcCc
Confidence 65543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.40 E-value=0.012 Score=56.88 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=50.8
Q ss_pred CCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCcc-CCCCCCCc
Q 038400 392 RPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSE-DMHHVTTL 469 (504)
Q Consensus 392 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 469 (504)
..+|+.+.+.. .+..++...+ ..+++|+.+.+.++ .++.++ ..+.++.+|+.+.|.. .++.++. .|.++.+|
T Consensus 262 ~~~l~~i~l~~--~i~~i~~~aF-~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 262 CTALKTLNFYA--KVKTVPYLLC-SGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKAL 335 (379)
T ss_dssp CTTCCEEEECC--CCSEECTTTT-TTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred eehhccccccc--cceecccccc-cccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCC
Confidence 33677777654 4555554432 46678888888654 355554 4577888888888864 3666654 46778888
Q ss_pred CeEeEe
Q 038400 470 KSLTIG 475 (504)
Q Consensus 470 ~~L~l~ 475 (504)
+.+.+.
T Consensus 336 ~~i~ip 341 (379)
T 4h09_A 336 STISYP 341 (379)
T ss_dssp CCCCCC
T ss_pred CEEEEC
Confidence 887774
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.26 E-value=0.011 Score=57.54 Aligned_cols=272 Identities=9% Similarity=0.134 Sum_probs=130.8
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccC-ccccCCCCcCe
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRY 255 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~ 255 (504)
.++.+.+...-. ..-...|.+|.+|+.+.+..+.......+....|..+..|+.+.+..+ ++.++ ..+..+.+|+.
T Consensus 65 ~L~sI~iP~svt--~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDTVT--EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTTCC--EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCCee--EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 356666654322 112466888899999887643211111122334566666666555433 23232 34556666666
Q ss_pred eeccCCCCccccCccee--cc---------ccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCC--
Q 038400 256 LDLSGNSKIKKLPKSIY--CL---------ELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGD-- 322 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~--~~---------~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~-- 322 (504)
+.+... +..++.... |. .+..+....-...+|+.+.+..+........+..+.+|..........
T Consensus 142 i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 142 VTIPEG--VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccccce--eeeecccceecccccccccccceeeEeccccccccceeEEEECCcccccccchhhhccccceeccccccccc
Confidence 666431 222221110 11 122222222223455555555443333333445555555443322100
Q ss_pred ------------------------cc--cch--------hhcCCCCcccEEeeccCCCcccc-CccCCCCCCccEEEecc
Q 038400 323 ------------------------LE--HLF--------EEIDQLRVLRTLSIVCCPRLISL-PPAIKYLSSLETLFLYK 367 (504)
Q Consensus 323 ------------------------l~--~~~--------~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~ 367 (504)
.. .+| ..+..+.+|+.+.+... ...+ ...+.++++|+.+.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~ 297 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS 297 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc--cceecCcccccccccccccCCC
Confidence 00 011 12334455555555331 1222 22345556666665532
Q ss_pred CCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcc
Q 038400 368 CESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALE 446 (504)
Q Consensus 368 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~ 446 (504)
. ++.. .........+|+.+.|.+ +++.+....+ ..+.+|+.+.+.+ .++.+. ..|.++++|+
T Consensus 298 ~--i~~I----------~~~aF~~c~~L~~i~lp~--~v~~I~~~aF-~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 298 R--ITEL----------PESVFAGCISLKSIDIPE--GITQILDDAF-AGCEQLERIAIPS--SVTKIPESAFSNCTALN 360 (394)
T ss_dssp T--CCEE----------CTTTTTTCTTCCEEECCT--TCCEECTTTT-TTCTTCCEEEECT--TCCBCCGGGGTTCTTCC
T ss_pred c--cccc----------CceeecCCCCcCEEEeCC--cccEehHhHh-hCCCCCCEEEECc--ccCEEhHhHhhCCCCCC
Confidence 1 1111 022233345888888865 5666655432 5678999999964 366665 4588999999
Q ss_pred eEecccCccCCcCccCCCCCCCcCeEeEe
Q 038400 447 TLFILGCPKLSSLSEDMHHVTTLKSLTIG 475 (504)
Q Consensus 447 ~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 475 (504)
.+.+.+... .+ ..+..+.+|+.+.+.
T Consensus 361 ~i~~~~~~~--~~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 361 NIEYSGSRS--QW-NAISTDSGLQNLPVA 386 (394)
T ss_dssp EEEESSCHH--HH-HTCBCCCCC------
T ss_pred EEEECCcee--eh-hhhhccCCCCEEEeC
Confidence 999987532 11 345566777777664
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.83 E-value=0.1 Score=50.28 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=54.0
Q ss_pred CCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCc-CCCCCCCcceEecccCccCCcCcc-CCCCCCCc
Q 038400 392 RPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPR-SLKDLEALETLFILGCPKLSSLSE-DMHHVTTL 469 (504)
Q Consensus 392 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L 469 (504)
...|+.+.+.. .++.+....+ ..+.+|+.+.+.. .++.++. .+..+++|+.+.+.++ .++.++. .|.++.+|
T Consensus 239 ~~~L~~i~lp~--~v~~I~~~aF-~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 239 MKALDEIAIPK--NVTSIGSFLL-QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKL 312 (379)
T ss_dssp CSSCCEEEECT--TCCEECTTTT-TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTC
T ss_pred CccceEEEcCC--CccEeCcccc-ceeehhccccccc--cceecccccccccccccccccccc-ccceehhhhhcCCCCC
Confidence 34677777754 3555544432 4567888888864 3566654 4788999999999764 5666654 57788999
Q ss_pred CeEeEe
Q 038400 470 KSLTIG 475 (504)
Q Consensus 470 ~~L~l~ 475 (504)
+.+.+.
T Consensus 313 ~~i~lp 318 (379)
T 4h09_A 313 SSVTLP 318 (379)
T ss_dssp CEEECC
T ss_pred CEEEcC
Confidence 999884
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.60 E-value=0.04 Score=47.38 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=18.0
Q ss_pred hhhccccCCeeeeccccccccc-----ccCCCCCCccEEeeeCC
Q 038400 282 DIRHLTSLRAFALTTKQKSLQE-----SGIRSLGSLRCLTISGC 320 (504)
Q Consensus 282 ~i~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~ 320 (504)
.+..-+.|++|++++|.+.... ..+..=+.|++|+++++
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3334455555555555543221 12333344666666543
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.46 E-value=0.14 Score=40.85 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=27.9
Q ss_pred EEEeCCCCcc--ccCccccCCCCcCeeeccCCCCccccCcceeccccccCchh-hhccccCCeeeecccc
Q 038400 232 VLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD-IRHLTSLRAFALTTKQ 298 (504)
Q Consensus 232 ~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 298 (504)
+++.++..++ .+|..+. .+|++|+|++|. +..||.+ +..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-------------l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-------------LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-------------CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-------------CCccChhhhhhccccCEEEecCCC
Confidence 5566666666 6665432 356667776664 4444433 3345555555555443
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.34 E-value=0.081 Score=45.45 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=58.5
Q ss_pred hhhhhcCCCCeeEEeeecC-Cccc-chHHHHHHhcCCCcccEEEeCCCCcc-----ccCccccCCCCcCeeeccCCCCcc
Q 038400 193 FSSLLSDLGRVRTIVFSTD-DEKI-SQSFVESCISKSQFLRVLNLSESAIE-----VCPRKIGNLKHMRYLDLSGNSKIK 265 (504)
Q Consensus 193 ~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~ 265 (504)
+.......+.|+.|.++++ .++. ....+...+..-..|+.|+|++|.+. .+-+.+..=..|+.|+|++|. ++
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CC
Confidence 3445556677888888753 4431 12234455666778888888888876 333445555678888888774 22
Q ss_pred ccCcceeccccccCchhhhccccCCeeeeccc
Q 038400 266 KLPKSIYCLELEELPKDIRHLTSLRAFALTTK 297 (504)
Q Consensus 266 ~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~ 297 (504)
......|-+.+..-+.|++|+++++
T Consensus 112 -------~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 -------PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp -------HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred -------HHHHHHHHHHHhhCCceeEEECCCC
Confidence 1112333344445566888888754
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.27 E-value=0.28 Score=39.01 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=30.7
Q ss_pred CcccEEEeCCCCccccCcc-ccCCCCcCeeeccCCC
Q 038400 228 QFLRVLNLSESAIEVCPRK-IGNLKHMRYLDLSGNS 262 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 262 (504)
.+|+.|+|++|.++.+|.. +..+.+|++|+|++|.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4699999999999998864 6789999999999985
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=81.31 E-value=5.6 Score=37.08 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhhhhhccCCchhHHHhhhhCC---ChhhHhhhhhhcccCCCCccChH
Q 038400 17 KIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLEQKESGILPILRLSYYQL---PPHLKQCVAYCSIFPKDYPFDSF 93 (504)
Q Consensus 17 ~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~~~~~~~~i~~~L~~sy~~L---~~~~k~~fl~~a~fp~~~~i~~~ 93 (504)
+.+.+|++.|+|.|+++..++..+....+. |.......+.+...+.-.+..+ ++..+.++..+|+ + ..+..
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~ 299 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDF--GRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWS 299 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccH--hHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHH
Confidence 466789999999999999998765422222 2211111111111121122222 6788999998887 2 23444
Q ss_pred HHHHHHHHccCcccCCCCchHHHHHHHHHHHHHHCcceeee
Q 038400 94 SLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDL 134 (504)
Q Consensus 94 ~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 134 (504)
.+........ +... ......+++.|.+.+++...
T Consensus 300 ~l~~~~~~~~------~~~~-~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 300 LIRDYLAVKG------TKIP-EPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHHHHTT------CCCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHh------CCCC-HHHHHHHHHHHHhCCCEEec
Confidence 5444432211 0011 23456789999999998764
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=74.02 E-value=7.4 Score=36.29 Aligned_cols=116 Identities=15% Similarity=0.016 Sum_probs=64.7
Q ss_pred HHHHHHcCCchHHHHHHHhhhcCCCChhhhhh-h-hhccCCchhHHH-hhhh--CCChhhHhhhhhhcccCCCCccChHH
Q 038400 20 EEIVKKCGGIPLAVRALGSLLYCSTDEHDWEY-L-EQKESGILPILR-LSYY--QLPPHLKQCVAYCSIFPKDYPFDSFS 94 (504)
Q Consensus 20 ~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~-~-~~~~~~i~~~L~-~sy~--~L~~~~k~~fl~~a~fp~~~~i~~~~ 94 (504)
..|++.|+|.|+++..++..+..+.+...|-. . ......+...+. +.++ .+++..+..+..+|+ +. +...
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~ 307 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSD 307 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHH
Confidence 68999999999999999987753333323321 0 010001111111 2221 577888999999998 22 4444
Q ss_pred HHHHHH-HccCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEE-eChhHHHH
Q 038400 95 LVQFWM-AHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFK-MHDLMHDL 155 (504)
Q Consensus 95 li~~w~-~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~-mhdl~~~~ 155 (504)
+..... ..|. . . .......++..|.+.+++..... .+. .|.++++.
T Consensus 308 l~~~~~~~~g~--~----~-~~~~~~~~L~~L~~~gli~~~~~--------~y~f~~~~~~~~ 355 (357)
T 2fna_A 308 VKRALELEEGI--E----I-SDSEIYNYLTQLTKHSWIIKEGE--------KYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHHCS--C----C-CHHHHHHHHHHHHHTTSEEESSS--------CEEESSHHHHHH
T ss_pred HHHHHHHhcCC--C----C-CHHHHHHHHHHHHhCCCEEecCC--------EEEecCHHHHHh
Confidence 433211 1121 0 0 12345678999999999875421 234 46777654
No 171
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=62.27 E-value=2.5 Score=39.24 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHhhhcCCCC---hhhhhhhhhccCCchhHHHhhhhCCChhhHhhhhhhcccCCCCcc---
Q 038400 17 KIGEEIVKKCGGIPLAVRALGSLLYCSTD---EHDWEYLEQKESGILPILRLSYYQLPPHLKQCVAYCSIFPKDYPF--- 90 (504)
Q Consensus 17 ~i~~~iv~~c~GlPLal~~ig~~L~~~~~---~~~W~~~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~fp~~~~i--- 90 (504)
+....+++++.|.|-.+..+.......-. ...... .....+.+.+..++..+++.++..+...+....+..+
T Consensus 191 ~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~--~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~ 268 (324)
T 1hqc_A 191 EAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITR--ERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLA 268 (324)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCH--HHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHH
Confidence 45667888889999877666554421100 000000 0001112223344567777777777665543333322
Q ss_pred --------ChHHH----HHHHHHccCcccCCCCchHHHHHHHHHH-HHHHCccee
Q 038400 91 --------DSFSL----VQFWMAHGLLQSHNKNEELEDIGMRYLK-ELLSRSFFH 132 (504)
Q Consensus 91 --------~~~~l----i~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~~~~l~~ 132 (504)
++..+ -++.+..|++.....+..+.+.|..|++ ++.+|+++|
T Consensus 269 ~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (324)
T 1hqc_A 269 TLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLE 323 (324)
T ss_dssp HHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC-----
T ss_pred HHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCC
Confidence 22222 2234556666554445566666777765 666666665
No 172
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=61.22 E-value=8.3 Score=36.94 Aligned_cols=117 Identities=14% Similarity=-0.054 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcC------CchHHHHHHHh-hhc----CCCChhhhhhhhhccC-Cc-hhHHHhhhhCCChhhHhhhhhhc
Q 038400 16 IKIGEEIVKKCG------GIPLAVRALGS-LLY----CSTDEHDWEYLEQKES-GI-LPILRLSYYQLPPHLKQCVAYCS 82 (504)
Q Consensus 16 ~~i~~~iv~~c~------GlPLal~~ig~-~L~----~~~~~~~W~~~~~~~~-~i-~~~L~~sy~~L~~~~k~~fl~~a 82 (504)
.+....|+++|+ |.|..+..+.. +.. .....-.++.+..... .. ...+.-+++.|+...+.++..+|
T Consensus 239 ~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia 318 (412)
T 1w5s_A 239 PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIA 318 (412)
T ss_dssp HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHH
Confidence 346678888899 99975544433 221 1111111121111111 11 34456677899999999999888
Q ss_pred ccC--CCCccChHHHHHHHHHcc--CcccCCCCchHHHHHHHHHHHHHHCcceeeec
Q 038400 83 IFP--KDYPFDSFSLVQFWMAHG--LLQSHNKNEELEDIGMRYLKELLSRSFFHDLT 135 (504)
Q Consensus 83 ~fp--~~~~i~~~~li~~w~~~g--~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~ 135 (504)
.+. .+..+...++...+.... .... ..........++.+|.+.+++....
T Consensus 319 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 319 EATLGGMEWINAGLLRQRYEDASLTMYNV---KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHTTCSSBCHHHHHHHHHHHHHHHSCC---CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 754 333555555554442110 1100 0011234567799999999997653
No 173
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=33.47 E-value=27 Score=18.07 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=14.4
Q ss_pred HcCCchHHHHHHHhhhcC
Q 038400 25 KCGGIPLAVRALGSLLYC 42 (504)
Q Consensus 25 ~c~GlPLal~~ig~~L~~ 42 (504)
+-.-||||..|.++.+..
T Consensus 7 krrklplavav~agv~~a 24 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCCTHHHHHHHHTTCC
T ss_pred ccccCchHHHHHHHHhHh
Confidence 345799999999998763
No 174
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.10 E-value=76 Score=23.26 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=15.6
Q ss_pred ccccCCeeeecccccccccccCCCCCCccEEeeeC
Q 038400 285 HLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISG 319 (504)
Q Consensus 285 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 319 (504)
.+.+|+.+.+..+........|.++.+|+.+.+.+
T Consensus 18 ~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 44444444444333333333455555555555543
Done!