Query 038401
Match_columns 542
No_of_seqs 720 out of 2921
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 10:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.5E-70 3.2E-75 551.1 67.4 519 15-540 366-915 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 5.1E-70 1.1E-74 558.8 56.1 505 15-539 218-725 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 1.3E-69 2.7E-74 555.9 54.7 516 2-532 105-652 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.2E-67 4.7E-72 528.3 62.5 493 1-500 388-910 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 8.1E-65 1.8E-69 508.2 53.8 474 52-538 85-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.8E-62 4E-67 491.3 51.3 507 16-539 84-609 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.3E-34 5.1E-39 303.6 66.3 514 2-532 348-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.8E-34 1.5E-38 300.1 65.4 517 2-537 314-869 (899)
9 PRK11447 cellulose synthase su 100.0 2.4E-26 5.1E-31 242.3 65.8 518 3-538 48-745 (1157)
10 PRK11447 cellulose synthase su 100.0 2.8E-24 6.1E-29 226.7 63.9 503 22-535 31-701 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.9E-22 4.2E-27 203.2 58.7 230 299-538 477-710 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1E-21 2.2E-26 198.1 59.4 503 2-535 63-741 (987)
13 KOG2002 TPR-containing nuclear 99.9 1.4E-21 3E-26 184.6 49.3 524 2-536 149-747 (1018)
14 KOG4626 O-linked N-acetylgluco 99.9 7.8E-23 1.7E-27 183.6 38.1 441 57-515 51-500 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 9E-22 1.9E-26 176.8 38.6 439 22-475 51-496 (966)
16 KOG2002 TPR-containing nuclear 99.9 5.6E-20 1.2E-24 173.9 48.0 454 37-501 254-748 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 6.2E-20 1.3E-24 182.2 50.3 423 93-533 131-570 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 3.2E-19 7E-24 177.1 52.7 428 21-465 129-572 (615)
19 PRK11788 tetratricopeptide rep 99.9 2.9E-21 6.3E-26 182.4 35.3 303 26-335 42-354 (389)
20 PRK10049 pgaA outer membrane p 99.9 1.1E-18 2.5E-23 176.2 50.7 400 53-496 14-453 (765)
21 PRK11788 tetratricopeptide rep 99.9 1.8E-20 4E-25 176.9 34.7 298 204-539 45-352 (389)
22 PRK10049 pgaA outer membrane p 99.9 6.2E-19 1.3E-23 178.2 47.5 428 3-465 2-457 (765)
23 PRK15174 Vi polysaccharide exp 99.9 2E-19 4.3E-24 177.8 42.6 332 125-465 43-382 (656)
24 PRK15174 Vi polysaccharide exp 99.9 4.2E-19 9.1E-24 175.4 44.0 327 26-361 49-379 (656)
25 PRK14574 hmsH outer membrane p 99.9 3.4E-17 7.3E-22 162.3 53.0 429 27-465 42-514 (822)
26 PRK14574 hmsH outer membrane p 99.9 6.7E-17 1.5E-21 160.2 50.7 424 63-498 43-512 (822)
27 KOG0495 HAT repeat protein [RN 99.9 4.7E-15 1E-19 135.0 55.6 496 15-535 376-881 (913)
28 KOG0495 HAT repeat protein [RN 99.8 4.3E-15 9.3E-20 135.2 49.2 462 15-497 406-878 (913)
29 KOG2003 TPR repeat-containing 99.8 3.1E-17 6.8E-22 142.6 32.1 451 56-520 203-709 (840)
30 KOG4422 Uncharacterized conser 99.8 7E-15 1.5E-19 127.2 43.2 322 19-361 116-460 (625)
31 KOG2076 RNA polymerase III tra 99.8 2.8E-14 6E-19 135.0 50.9 345 15-364 135-513 (895)
32 KOG1915 Cell cycle control pro 99.8 1.1E-13 2.3E-18 121.6 50.7 467 17-496 71-582 (677)
33 KOG2076 RNA polymerase III tra 99.8 5.4E-14 1.2E-18 133.1 51.6 526 1-535 157-850 (895)
34 KOG1915 Cell cycle control pro 99.8 5.4E-14 1.2E-18 123.4 47.6 449 1-464 91-585 (677)
35 KOG4422 Uncharacterized conser 99.8 1.8E-14 3.9E-19 124.8 41.7 323 55-398 117-466 (625)
36 KOG2003 TPR repeat-containing 99.8 5.3E-15 1.2E-19 128.9 33.8 456 20-485 202-709 (840)
37 PRK10747 putative protoheme IX 99.7 2.1E-14 4.6E-19 134.0 34.1 283 172-463 97-389 (398)
38 KOG1155 Anaphase-promoting com 99.7 2E-12 4.3E-17 113.5 40.1 156 336-495 332-491 (559)
39 TIGR00540 hemY_coli hemY prote 99.7 6.8E-14 1.5E-18 131.4 33.3 286 171-463 96-398 (409)
40 KOG2047 mRNA splicing factor [ 99.7 9.5E-11 2.1E-15 107.3 51.5 385 125-520 249-709 (835)
41 KOG1155 Anaphase-promoting com 99.7 7.6E-13 1.7E-17 116.0 35.8 329 190-533 160-494 (559)
42 PF13429 TPR_15: Tetratricopep 99.7 1.7E-16 3.7E-21 141.6 13.4 257 269-533 13-276 (280)
43 PF13429 TPR_15: Tetratricopep 99.7 5.4E-16 1.2E-20 138.5 14.4 261 24-291 13-275 (280)
44 PRK10747 putative protoheme IX 99.7 5.7E-13 1.2E-17 124.5 34.7 281 67-360 97-387 (398)
45 KOG0547 Translocase of outer m 99.7 1.1E-12 2.4E-17 115.8 33.5 409 57-496 118-563 (606)
46 KOG0547 Translocase of outer m 99.7 3.8E-12 8.2E-17 112.5 36.8 218 309-531 336-563 (606)
47 KOG1126 DNA-binding cell divis 99.7 2.2E-14 4.7E-19 131.5 23.7 287 243-540 333-626 (638)
48 TIGR00540 hemY_coli hemY prote 99.7 5.5E-13 1.2E-17 125.3 33.9 288 65-360 95-396 (409)
49 KOG2047 mRNA splicing factor [ 99.7 1.1E-10 2.4E-15 106.9 46.6 496 19-530 102-683 (835)
50 KOG4318 Bicoid mRNA stability 99.7 1.1E-12 2.4E-17 123.9 34.5 221 5-244 12-286 (1088)
51 KOG1173 Anaphase-promoting com 99.7 1.2E-11 2.5E-16 111.6 39.2 468 17-501 14-521 (611)
52 KOG3785 Uncharacterized conser 99.7 5.4E-11 1.2E-15 101.0 39.4 441 26-497 29-488 (557)
53 KOG1173 Anaphase-promoting com 99.7 1.1E-11 2.4E-16 111.7 37.3 469 53-535 15-519 (611)
54 COG3071 HemY Uncharacterized e 99.7 2.7E-12 5.9E-17 110.8 31.9 294 137-464 97-390 (400)
55 COG2956 Predicted N-acetylgluc 99.6 4E-12 8.7E-17 106.4 30.5 287 67-360 48-344 (389)
56 COG2956 Predicted N-acetylgluc 99.6 5.7E-12 1.2E-16 105.5 30.2 290 32-328 48-347 (389)
57 KOG3785 Uncharacterized conser 99.6 4.3E-11 9.2E-16 101.6 35.2 449 61-539 29-495 (557)
58 KOG1156 N-terminal acetyltrans 99.6 1.1E-09 2.3E-14 100.8 46.6 448 3-464 27-511 (700)
59 COG3071 HemY Uncharacterized e 99.6 2.3E-11 4.9E-16 105.3 32.9 284 67-360 97-387 (400)
60 KOG1126 DNA-binding cell divis 99.6 6.6E-13 1.4E-17 122.0 24.9 281 209-501 334-623 (638)
61 KOG1156 N-terminal acetyltrans 99.6 2.5E-09 5.5E-14 98.4 44.9 469 29-531 17-508 (700)
62 KOG4318 Bicoid mRNA stability 99.6 2.7E-11 5.9E-16 114.8 32.6 251 40-311 11-283 (1088)
63 KOG4162 Predicted calmodulin-b 99.5 3.9E-09 8.5E-14 99.2 42.5 402 118-533 317-782 (799)
64 KOG1174 Anaphase-promoting com 99.5 2.5E-09 5.3E-14 93.1 37.4 303 226-538 191-504 (564)
65 PF12569 NARP1: NMDA receptor- 99.5 8.3E-09 1.8E-13 97.5 41.0 53 477-530 463-516 (517)
66 KOG1129 TPR repeat-containing 99.5 1.3E-11 2.8E-16 103.5 19.3 231 268-536 227-460 (478)
67 KOG4162 Predicted calmodulin-b 99.5 4.7E-09 1E-13 98.7 37.9 403 83-496 317-780 (799)
68 TIGR02521 type_IV_pilW type IV 99.5 4.3E-11 9.2E-16 104.6 23.7 196 335-534 32-232 (234)
69 PRK12370 invasion protein regu 99.4 2.8E-10 6.1E-15 111.4 30.8 269 51-329 253-536 (553)
70 KOG1129 TPR repeat-containing 99.4 2.2E-11 4.8E-16 102.2 19.3 227 232-497 226-456 (478)
71 PRK12370 invasion protein regu 99.4 8.1E-11 1.8E-15 115.1 26.7 245 279-535 276-536 (553)
72 KOG2376 Signal recognition par 99.4 6.1E-08 1.3E-12 88.6 41.5 454 21-501 14-522 (652)
73 KOG1174 Anaphase-promoting com 99.4 8E-08 1.7E-12 84.0 38.3 80 382-465 421-501 (564)
74 TIGR02521 type_IV_pilW type IV 99.4 5.6E-10 1.2E-14 97.5 26.4 200 54-257 31-231 (234)
75 KOG1840 Kinesin light chain [C 99.4 6E-10 1.3E-14 103.7 26.0 243 265-532 200-477 (508)
76 PF12569 NARP1: NMDA receptor- 99.4 4.9E-09 1.1E-13 99.1 31.8 304 202-533 12-333 (517)
77 PRK11189 lipoprotein NlpI; Pro 99.4 3.6E-10 7.8E-15 101.1 23.0 149 276-427 38-192 (296)
78 KOG2376 Signal recognition par 99.3 1.9E-07 4E-12 85.6 39.0 444 58-530 16-516 (652)
79 COG3063 PilF Tfp pilus assembl 99.3 1.2E-09 2.5E-14 87.7 21.5 192 338-533 39-235 (250)
80 KOG1840 Kinesin light chain [C 99.3 4.4E-09 9.6E-14 98.1 27.9 126 302-427 328-477 (508)
81 PF13041 PPR_2: PPR repeat fam 99.3 8.6E-12 1.9E-16 77.5 6.8 50 17-66 1-50 (50)
82 KOG3616 Selective LIM binding 99.3 7.4E-08 1.6E-12 90.3 35.1 218 274-530 716-933 (1636)
83 KOG4340 Uncharacterized conser 99.3 1E-08 2.2E-13 85.4 26.2 197 20-226 11-210 (459)
84 COG3063 PilF Tfp pilus assembl 99.3 1E-08 2.2E-13 82.4 23.6 192 268-463 39-235 (250)
85 KOG1127 TPR repeat-containing 99.3 4.1E-08 8.9E-13 95.0 31.8 471 15-495 487-1032(1238)
86 PF13041 PPR_2: PPR repeat fam 99.3 1.6E-11 3.5E-16 76.3 6.2 48 122-169 1-48 (50)
87 KOG3617 WD40 and TPR repeat-co 99.3 1.3E-06 2.8E-11 83.3 40.8 471 18-536 756-1361(1416)
88 KOG2053 Mitochondrial inherita 99.3 2E-06 4.4E-11 82.9 42.5 511 2-532 28-606 (932)
89 KOG0548 Molecular co-chaperone 99.3 8.3E-08 1.8E-12 86.9 31.4 404 96-535 9-456 (539)
90 KOG0548 Molecular co-chaperone 99.2 4.1E-07 8.8E-12 82.6 34.7 443 27-495 10-485 (539)
91 KOG0985 Vesicle coat protein c 99.2 1.6E-06 3.4E-11 84.6 40.2 125 22-149 609-749 (1666)
92 KOG3616 Selective LIM binding 99.2 4E-07 8.6E-12 85.6 34.6 265 236-536 739-1026(1636)
93 cd05804 StaR_like StaR_like; a 99.2 2.2E-07 4.9E-12 86.7 33.0 197 339-535 119-337 (355)
94 PRK11189 lipoprotein NlpI; Pro 99.2 3.1E-08 6.8E-13 88.7 25.5 30 400-429 236-265 (296)
95 KOG4340 Uncharacterized conser 99.2 2.9E-07 6.3E-12 77.0 28.8 295 54-360 10-336 (459)
96 KOG1127 TPR repeat-containing 99.2 8.2E-07 1.8E-11 86.4 35.2 176 352-531 801-993 (1238)
97 KOG0624 dsRNA-activated protei 99.2 2E-06 4.4E-11 73.6 33.5 308 127-465 41-371 (504)
98 KOG0985 Vesicle coat protein c 99.1 8.6E-06 1.9E-10 79.7 40.9 416 26-495 845-1304(1666)
99 KOG3617 WD40 and TPR repeat-co 99.1 1.7E-06 3.8E-11 82.5 34.6 409 53-529 725-1169(1416)
100 PF04733 Coatomer_E: Coatomer 99.1 8E-09 1.7E-13 90.9 17.7 245 241-498 13-264 (290)
101 cd05804 StaR_like StaR_like; a 99.1 1.6E-06 3.5E-11 81.0 34.0 92 164-256 119-213 (355)
102 KOG1125 TPR repeat-containing 99.1 3E-08 6.4E-13 90.5 19.8 249 272-527 293-564 (579)
103 PRK04841 transcriptional regul 99.0 6.3E-06 1.4E-10 87.4 39.9 331 99-429 384-760 (903)
104 PRK04841 transcriptional regul 99.0 5.5E-06 1.2E-10 87.8 39.0 332 134-465 384-761 (903)
105 TIGR03302 OM_YfiO outer membra 99.0 3.8E-08 8.2E-13 85.7 18.5 61 475-535 171-233 (235)
106 PF04733 Coatomer_E: Coatomer 99.0 9.9E-08 2.2E-12 84.1 18.8 149 133-292 111-264 (290)
107 KOG1128 Uncharacterized conser 98.9 2.9E-07 6.4E-12 86.5 21.1 214 267-498 401-615 (777)
108 KOG1914 mRNA cleavage and poly 98.9 5.5E-05 1.2E-09 69.2 38.6 407 16-428 17-500 (656)
109 PRK10370 formate-dependent nit 98.9 2.5E-07 5.5E-12 76.9 17.5 144 341-497 23-171 (198)
110 KOG1125 TPR repeat-containing 98.9 9.8E-07 2.1E-11 80.9 22.1 222 27-256 293-525 (579)
111 KOG1070 rRNA processing protei 98.9 1.3E-06 2.9E-11 87.9 24.3 224 227-454 1456-1690(1710)
112 TIGR03302 OM_YfiO outer membra 98.9 4.3E-07 9.3E-12 79.0 18.9 183 298-500 32-233 (235)
113 KOG1128 Uncharacterized conser 98.9 8.1E-07 1.8E-11 83.7 21.1 220 226-465 395-617 (777)
114 PLN02789 farnesyltranstransfer 98.8 1E-05 2.2E-10 72.4 26.7 215 21-241 39-267 (320)
115 PRK15359 type III secretion sy 98.8 3.9E-07 8.4E-12 71.6 15.6 121 385-515 13-136 (144)
116 COG5010 TadD Flp pilus assembl 98.8 2.2E-06 4.8E-11 70.9 20.3 159 333-497 66-229 (257)
117 KOG0624 dsRNA-activated protei 98.8 6.4E-05 1.4E-09 64.7 33.3 304 17-329 36-371 (504)
118 COG4783 Putative Zn-dependent 98.8 1.8E-06 3.8E-11 77.8 20.4 140 373-535 314-455 (484)
119 KOG1070 rRNA processing protei 98.8 1.2E-06 2.7E-11 88.2 21.1 198 333-538 1457-1667(1710)
120 PRK15179 Vi polysaccharide bio 98.8 1.3E-06 2.8E-11 86.3 21.3 129 398-532 84-215 (694)
121 PLN02789 farnesyltranstransfer 98.8 8E-06 1.7E-10 73.1 24.5 200 313-518 51-268 (320)
122 PF09976 TPR_21: Tetratricopep 98.7 6.4E-07 1.4E-11 70.8 15.0 124 402-531 14-144 (145)
123 PRK10370 formate-dependent nit 98.7 2.6E-06 5.6E-11 70.9 19.0 95 368-465 76-174 (198)
124 KOG3081 Vesicle coat complex C 98.7 3.3E-05 7.1E-10 64.1 24.4 245 241-499 20-271 (299)
125 PRK15359 type III secretion sy 98.7 5.7E-07 1.2E-11 70.6 14.0 95 368-465 27-122 (144)
126 KOG1914 mRNA cleavage and poly 98.7 0.00027 5.8E-09 64.9 41.7 134 51-188 17-166 (656)
127 KOG3060 Uncharacterized conser 98.7 5.4E-05 1.2E-09 62.4 23.5 184 278-465 26-221 (289)
128 KOG3081 Vesicle coat complex C 98.6 7.1E-05 1.5E-09 62.2 23.4 133 165-308 114-250 (299)
129 PF12854 PPR_1: PPR repeat 98.6 5.6E-08 1.2E-12 53.9 3.9 32 14-45 2-33 (34)
130 PF12854 PPR_1: PPR repeat 98.6 5.7E-08 1.2E-12 53.8 3.8 32 49-80 2-33 (34)
131 COG5010 TadD Flp pilus assembl 98.6 1.4E-05 3.1E-10 66.3 18.2 157 369-530 70-227 (257)
132 KOG2053 Mitochondrial inherita 98.6 0.001 2.2E-08 65.1 43.5 478 29-526 19-562 (932)
133 TIGR02552 LcrH_SycD type III s 98.5 2E-06 4.3E-11 67.4 12.3 113 386-501 4-117 (135)
134 PRK14720 transcript cleavage f 98.5 0.00014 3E-09 73.2 27.5 219 53-309 30-267 (906)
135 COG4783 Putative Zn-dependent 98.5 0.00048 1E-08 62.7 27.6 139 238-394 315-454 (484)
136 PRK14720 transcript cleavage f 98.5 9.5E-05 2.1E-09 74.3 25.6 233 17-275 29-268 (906)
137 KOG3060 Uncharacterized conser 98.5 5E-05 1.1E-09 62.6 19.1 183 311-497 24-218 (289)
138 PF12895 Apc3: Anaphase-promot 98.5 3.9E-07 8.3E-12 64.2 6.3 82 448-531 2-84 (84)
139 TIGR02552 LcrH_SycD type III s 98.5 9.7E-06 2.1E-10 63.5 14.8 91 373-465 25-115 (135)
140 PRK15179 Vi polysaccharide bio 98.5 3.5E-05 7.7E-10 76.4 21.4 133 330-465 82-218 (694)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 8.3E-06 1.8E-10 74.5 15.3 122 338-462 173-295 (395)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.6E-05 3.4E-10 72.7 16.0 120 405-532 174-295 (395)
143 TIGR02795 tol_pal_ybgF tol-pal 98.3 2.7E-05 5.8E-10 59.4 12.2 91 403-495 5-101 (119)
144 PF09976 TPR_21: Tetratricopep 98.2 8.7E-05 1.9E-09 58.6 14.9 115 377-495 23-143 (145)
145 PF12895 Apc3: Anaphase-promot 98.2 4.1E-06 8.9E-11 58.9 5.8 81 413-495 2-83 (84)
146 PRK15363 pathogenicity island 98.2 4.3E-05 9.2E-10 59.0 11.6 95 400-498 35-131 (157)
147 PRK15363 pathogenicity island 98.2 7.1E-05 1.5E-09 57.8 12.7 98 371-470 41-138 (157)
148 PF13812 PPR_3: Pentatricopept 98.1 4.2E-06 9.2E-11 46.9 4.2 33 20-52 2-34 (34)
149 KOG0553 TPR repeat-containing 98.1 1.4E-05 3.1E-10 67.6 8.2 92 406-502 87-182 (304)
150 KOG0553 TPR repeat-containing 98.1 3.8E-05 8.1E-10 65.2 10.4 88 375-465 91-179 (304)
151 TIGR00756 PPR pentatricopeptid 98.1 6.9E-06 1.5E-10 46.4 4.2 33 21-53 2-34 (35)
152 cd00189 TPR Tetratricopeptide 98.1 6.1E-05 1.3E-09 54.7 10.4 92 440-534 5-97 (100)
153 COG4700 Uncharacterized protei 98.1 0.0017 3.7E-08 51.1 17.8 126 365-495 89-218 (251)
154 PF10037 MRP-S27: Mitochondria 98.1 0.00011 2.4E-09 67.5 13.6 121 191-311 63-185 (429)
155 KOG0550 Molecular chaperone (D 98.0 0.0029 6.4E-08 56.4 21.1 89 375-465 259-351 (486)
156 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00014 3.1E-09 55.4 12.1 95 369-465 6-106 (119)
157 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.2E-10 45.7 4.2 33 126-158 2-34 (35)
158 PF10037 MRP-S27: Mitochondria 98.0 0.0002 4.3E-09 65.9 14.2 118 88-205 65-184 (429)
159 KOG0550 Molecular chaperone (D 98.0 0.0015 3.2E-08 58.2 18.7 87 407-496 256-347 (486)
160 PRK10866 outer membrane biogen 98.0 0.0048 1E-07 53.3 21.8 58 60-118 38-98 (243)
161 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.7E-10 44.9 4.1 32 126-157 3-34 (34)
162 PLN03088 SGT1, suppressor of 98.0 7E-05 1.5E-09 68.9 11.2 104 405-514 7-113 (356)
163 PF13432 TPR_16: Tetratricopep 98.0 3.7E-05 8E-10 50.9 6.9 59 476-535 3-61 (65)
164 PRK02603 photosystem I assembl 98.0 0.00022 4.8E-09 58.3 12.8 89 400-490 35-126 (172)
165 PRK10803 tol-pal system protei 98.0 0.00018 3.9E-09 62.4 12.4 84 411-496 154-243 (263)
166 PLN03088 SGT1, suppressor of 97.9 0.00031 6.7E-09 64.7 14.5 92 371-465 8-100 (356)
167 COG3898 Uncharacterized membra 97.9 0.013 2.9E-07 52.0 28.0 276 206-496 96-389 (531)
168 PRK10866 outer membrane biogen 97.9 0.0041 8.9E-08 53.7 20.0 58 475-532 180-239 (243)
169 cd00189 TPR Tetratricopeptide 97.9 0.00028 6.1E-09 51.1 11.3 88 374-463 9-96 (100)
170 PF05843 Suf: Suppressor of fo 97.9 0.00063 1.4E-08 60.4 15.0 131 20-153 2-136 (280)
171 PF14938 SNAP: Soluble NSF att 97.9 0.0034 7.5E-08 56.0 19.5 199 271-496 42-263 (282)
172 PF12688 TPR_5: Tetratrico pep 97.9 0.00088 1.9E-08 50.0 13.0 91 406-496 7-101 (120)
173 PF14938 SNAP: Soluble NSF att 97.9 0.004 8.7E-08 55.6 19.8 181 314-508 30-235 (282)
174 COG4700 Uncharacterized protei 97.9 0.0082 1.8E-07 47.4 19.0 123 296-420 86-213 (251)
175 PF08579 RPM2: Mitochondrial r 97.8 0.00036 7.9E-09 49.9 9.9 75 96-170 32-115 (120)
176 PRK10153 DNA-binding transcrip 97.8 0.0013 2.8E-08 63.4 16.9 57 436-495 421-478 (517)
177 PF13414 TPR_11: TPR repeat; P 97.8 0.00016 3.4E-09 48.6 7.8 65 399-465 2-68 (69)
178 PRK02603 photosystem I assembl 97.8 0.0015 3.2E-08 53.4 14.8 88 20-108 36-125 (172)
179 PF05843 Suf: Suppressor of fo 97.8 0.0014 3E-08 58.2 15.1 128 336-465 3-137 (280)
180 COG4235 Cytochrome c biogenesi 97.8 0.0012 2.6E-08 56.7 13.9 114 380-498 137-255 (287)
181 KOG2041 WD40 repeat protein [G 97.8 0.044 9.6E-07 52.7 27.3 26 192-217 850-875 (1189)
182 KOG2041 WD40 repeat protein [G 97.8 0.045 9.7E-07 52.6 27.9 205 121-362 689-906 (1189)
183 PF12688 TPR_5: Tetratrico pep 97.7 0.00097 2.1E-08 49.8 11.6 94 440-533 6-103 (120)
184 CHL00033 ycf3 photosystem I as 97.7 0.0014 3.1E-08 53.3 13.7 94 400-494 35-137 (168)
185 PF13432 TPR_16: Tetratricopep 97.7 0.00024 5.2E-09 47.0 7.5 56 408-465 5-61 (65)
186 CHL00033 ycf3 photosystem I as 97.7 0.00067 1.5E-08 55.3 11.6 113 416-530 15-138 (168)
187 PF13525 YfiO: Outer membrane 97.7 0.01 2.2E-07 50.0 18.9 75 447-525 122-198 (203)
188 PF13414 TPR_11: TPR repeat; P 97.7 0.00023 5E-09 47.7 7.4 56 476-533 9-66 (69)
189 PF08579 RPM2: Mitochondrial r 97.7 0.00071 1.5E-08 48.4 9.8 76 23-98 29-113 (120)
190 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.036 7.9E-07 50.4 33.7 131 401-535 398-532 (660)
191 PRK10803 tol-pal system protei 97.7 0.00061 1.3E-08 59.2 11.6 90 446-535 154-247 (263)
192 PRK10153 DNA-binding transcrip 97.7 0.0039 8.4E-08 60.2 18.0 86 382-469 401-487 (517)
193 COG4235 Cytochrome c biogenesi 97.7 0.0016 3.4E-08 56.0 13.1 107 363-474 154-264 (287)
194 KOG1130 Predicted G-alpha GTPa 97.7 0.00039 8.5E-09 61.6 9.6 132 402-533 197-343 (639)
195 PF01535 PPR: PPR repeat; Int 97.7 7.4E-05 1.6E-09 40.6 3.5 29 21-49 2-30 (31)
196 PF14559 TPR_19: Tetratricopep 97.7 0.00024 5.3E-09 47.5 6.7 49 447-496 3-51 (68)
197 PF01535 PPR: PPR repeat; Int 97.6 8E-05 1.7E-09 40.5 3.5 29 126-154 2-30 (31)
198 PF14559 TPR_19: Tetratricopep 97.6 0.00027 5.9E-09 47.2 6.7 51 377-428 3-53 (68)
199 PF13525 YfiO: Outer membrane 97.6 0.019 4.2E-07 48.3 18.4 180 24-212 10-196 (203)
200 PF10300 DUF3808: Protein of u 97.5 0.0047 1E-07 59.2 16.1 119 413-533 246-375 (468)
201 PRK15331 chaperone protein Sic 97.5 0.001 2.2E-08 51.8 9.3 93 407-501 44-136 (165)
202 PRK15331 chaperone protein Sic 97.5 0.0041 9E-08 48.5 12.5 88 375-464 47-134 (165)
203 KOG1538 Uncharacterized conser 97.5 0.017 3.8E-07 54.7 18.1 214 268-498 602-845 (1081)
204 PF06239 ECSIT: Evolutionarily 97.5 0.0049 1.1E-07 50.3 12.7 35 279-313 118-152 (228)
205 PF07079 DUF1347: Protein of u 97.5 0.085 1.8E-06 48.2 46.3 442 29-498 16-523 (549)
206 KOG1130 Predicted G-alpha GTPa 97.4 0.0012 2.6E-08 58.7 9.7 96 436-531 196-301 (639)
207 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.089 1.9E-06 48.0 36.0 426 5-445 31-545 (660)
208 PF13281 DUF4071: Domain of un 97.4 0.023 5.1E-07 51.5 17.7 163 335-499 142-334 (374)
209 PF13371 TPR_9: Tetratricopept 97.4 0.00084 1.8E-08 45.6 6.4 52 443-496 3-55 (73)
210 KOG1538 Uncharacterized conser 97.3 0.058 1.3E-06 51.4 19.4 37 145-184 621-657 (1081)
211 PF06239 ECSIT: Evolutionarily 97.3 0.0077 1.7E-07 49.2 12.2 88 122-209 45-153 (228)
212 COG1729 Uncharacterized protei 97.3 0.0029 6.3E-08 53.7 9.7 95 402-499 144-244 (262)
213 PF13512 TPR_18: Tetratricopep 97.3 0.016 3.4E-07 44.3 12.5 67 406-472 16-84 (142)
214 COG3118 Thioredoxin domain-con 97.2 0.033 7.2E-07 47.9 15.7 153 374-530 143-297 (304)
215 PRK11906 transcriptional regul 97.2 0.024 5.2E-07 52.3 16.0 111 416-530 320-432 (458)
216 KOG1920 IkappaB kinase complex 97.2 0.18 3.9E-06 52.0 23.0 157 347-531 893-1052(1265)
217 KOG2796 Uncharacterized conser 97.2 0.041 8.8E-07 46.3 15.5 118 377-496 189-312 (366)
218 KOG2280 Vacuolar assembly/sort 97.2 0.26 5.7E-06 48.1 32.3 341 153-531 426-796 (829)
219 PF13281 DUF4071: Domain of un 97.1 0.1 2.2E-06 47.5 18.6 163 370-535 146-335 (374)
220 COG4785 NlpI Lipoprotein NlpI, 97.1 0.084 1.8E-06 43.1 15.9 162 367-535 101-267 (297)
221 PF13424 TPR_12: Tetratricopep 97.1 0.0016 3.5E-08 44.9 5.7 63 401-463 6-74 (78)
222 KOG0543 FKBP-type peptidyl-pro 97.1 0.02 4.4E-07 51.4 13.3 96 437-535 259-356 (397)
223 KOG2610 Uncharacterized conser 97.1 0.017 3.7E-07 50.2 12.4 112 347-461 116-235 (491)
224 PF13371 TPR_9: Tetratricopept 97.1 0.0052 1.1E-07 41.6 7.8 55 409-465 4-59 (73)
225 COG1729 Uncharacterized protei 97.0 0.0078 1.7E-07 51.2 9.9 89 377-465 153-245 (262)
226 PF03704 BTAD: Bacterial trans 97.0 0.058 1.3E-06 42.6 14.7 69 92-161 65-138 (146)
227 KOG1258 mRNA processing protei 97.0 0.35 7.5E-06 46.2 35.1 410 18-449 44-489 (577)
228 PF13424 TPR_12: Tetratricopep 97.0 0.0031 6.8E-08 43.4 6.4 57 476-532 11-73 (78)
229 COG3898 Uncharacterized membra 96.9 0.27 5.9E-06 44.1 30.5 218 241-465 166-393 (531)
230 PF04840 Vps16_C: Vps16, C-ter 96.9 0.29 6.2E-06 44.2 30.7 56 333-390 207-262 (319)
231 KOG2796 Uncharacterized conser 96.9 0.2 4.4E-06 42.3 22.0 127 302-429 180-315 (366)
232 PF07079 DUF1347: Protein of u 96.9 0.35 7.6E-06 44.4 42.7 433 2-462 25-522 (549)
233 PF13512 TPR_18: Tetratricopep 96.9 0.048 1E-06 41.7 12.1 50 446-495 21-72 (142)
234 PF10300 DUF3808: Protein of u 96.9 0.071 1.5E-06 51.3 16.4 116 378-497 246-374 (468)
235 KOG1941 Acetylcholine receptor 96.8 0.14 3.1E-06 45.3 16.2 54 373-426 130-188 (518)
236 KOG4555 TPR repeat-containing 96.8 0.036 7.8E-07 41.0 10.2 91 374-465 52-145 (175)
237 COG2976 Uncharacterized protei 96.8 0.11 2.4E-06 41.7 13.8 117 418-536 70-190 (207)
238 PRK11906 transcriptional regul 96.8 0.094 2E-06 48.6 15.3 110 379-495 318-432 (458)
239 PF03704 BTAD: Bacterial trans 96.8 0.02 4.3E-07 45.3 10.1 73 55-128 63-140 (146)
240 PF04840 Vps16_C: Vps16, C-ter 96.7 0.42 9.1E-06 43.2 32.1 108 266-389 179-286 (319)
241 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0097 2.1E-07 54.7 8.6 93 367-465 77-175 (453)
242 COG3118 Thioredoxin domain-con 96.7 0.094 2E-06 45.2 13.8 124 407-535 141-266 (304)
243 PF04184 ST7: ST7 protein; In 96.7 0.55 1.2E-05 43.9 19.3 97 369-466 263-377 (539)
244 COG4649 Uncharacterized protei 96.7 0.15 3.2E-06 40.1 13.4 123 375-499 68-196 (221)
245 COG4105 ComL DNA uptake lipopr 96.5 0.42 9.2E-06 40.6 21.6 57 165-222 173-232 (254)
246 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.027 5.9E-07 51.9 10.3 66 397-464 72-141 (453)
247 PF12921 ATP13: Mitochondrial 96.5 0.037 8.1E-07 41.9 9.4 53 118-170 46-99 (126)
248 smart00299 CLH Clathrin heavy 96.4 0.21 4.5E-06 39.1 13.6 131 364-517 6-137 (140)
249 PF12921 ATP13: Mitochondrial 96.4 0.086 1.9E-06 39.9 10.7 82 18-99 1-98 (126)
250 KOG2396 HAT (Half-A-TPR) repea 96.4 0.88 1.9E-05 42.6 40.0 69 15-84 101-170 (568)
251 KOG4555 TPR repeat-containing 96.4 0.066 1.4E-06 39.6 9.5 91 407-499 50-144 (175)
252 KOG0543 FKBP-type peptidyl-pro 96.3 0.088 1.9E-06 47.5 11.7 62 371-435 263-324 (397)
253 KOG1258 mRNA processing protei 96.3 1.2 2.5E-05 42.8 36.0 393 4-414 66-489 (577)
254 COG4105 ComL DNA uptake lipopr 96.2 0.64 1.4E-05 39.5 20.7 59 441-499 173-233 (254)
255 KOG1941 Acetylcholine receptor 96.2 0.86 1.9E-05 40.7 17.9 57 407-463 213-274 (518)
256 PF04053 Coatomer_WDAD: Coatom 96.2 0.22 4.7E-06 47.3 14.6 155 29-219 271-427 (443)
257 KOG2114 Vacuolar assembly/sort 96.2 1.6 3.5E-05 43.6 26.1 177 23-220 338-516 (933)
258 KOG2610 Uncharacterized conser 96.1 0.11 2.3E-06 45.5 10.9 159 375-538 113-280 (491)
259 PF04053 Coatomer_WDAD: Coatom 96.0 0.5 1.1E-05 44.9 16.0 154 239-424 271-426 (443)
260 PF04184 ST7: ST7 protein; In 95.9 0.8 1.7E-05 42.9 16.3 60 439-498 263-323 (539)
261 PF13176 TPR_7: Tetratricopept 95.9 0.0085 1.8E-07 33.7 2.4 27 507-533 1-27 (36)
262 KOG2280 Vacuolar assembly/sort 95.7 2.5 5.5E-05 41.8 33.2 361 64-460 399-795 (829)
263 COG4649 Uncharacterized protei 95.6 0.85 1.8E-05 36.0 14.4 120 346-465 70-197 (221)
264 KOG1585 Protein required for f 95.6 1.2 2.6E-05 37.5 15.2 205 301-530 33-252 (308)
265 KOG1920 IkappaB kinase complex 95.6 3.1 6.7E-05 43.6 20.2 102 345-462 950-1053(1265)
266 PF13431 TPR_17: Tetratricopep 95.4 0.015 3.3E-07 32.0 2.3 28 496-525 6-33 (34)
267 smart00299 CLH Clathrin heavy 95.4 0.95 2.1E-05 35.3 15.4 42 24-66 12-53 (140)
268 PF13428 TPR_14: Tetratricopep 95.4 0.062 1.3E-06 31.8 5.1 26 403-428 4-29 (44)
269 PF13428 TPR_14: Tetratricopep 95.2 0.085 1.8E-06 31.2 5.3 39 21-60 3-41 (44)
270 KOG2114 Vacuolar assembly/sort 95.2 4 8.7E-05 41.1 26.5 146 22-185 371-516 (933)
271 KOG3941 Intermediate in Toll s 95.1 0.27 5.8E-06 42.1 9.6 104 192-314 65-173 (406)
272 PF07719 TPR_2: Tetratricopept 95.0 0.062 1.4E-06 29.5 4.2 30 506-535 2-31 (34)
273 COG0457 NrfG FOG: TPR repeat [ 95.0 2.1 4.5E-05 36.9 31.3 197 299-498 59-264 (291)
274 KOG4234 TPR repeat-containing 95.0 0.42 9.2E-06 38.7 9.9 93 405-501 100-200 (271)
275 PF08631 SPO22: Meiosis protei 95.0 2.5 5.4E-05 37.7 26.3 147 383-532 105-273 (278)
276 PF13174 TPR_6: Tetratricopept 95.0 0.058 1.3E-06 29.3 3.9 30 507-536 2-31 (33)
277 KOG1585 Protein required for f 94.9 2 4.4E-05 36.2 18.1 207 266-495 33-252 (308)
278 PF00515 TPR_1: Tetratricopept 94.6 0.093 2E-06 28.8 4.2 30 506-535 2-31 (34)
279 PF09613 HrpB1_HrpK: Bacterial 94.6 1.8 3.8E-05 34.1 12.3 49 378-428 23-72 (160)
280 PF10602 RPN7: 26S proteasome 94.5 0.54 1.2E-05 38.4 9.9 101 400-500 36-143 (177)
281 KOG1550 Extracellular protein 94.5 5.8 0.00013 39.5 26.0 145 380-533 379-537 (552)
282 PF00515 TPR_1: Tetratricopept 94.3 0.12 2.6E-06 28.3 4.2 27 438-464 4-30 (34)
283 PF07035 Mic1: Colon cancer-as 94.3 2.2 4.8E-05 34.1 16.8 30 252-281 17-46 (167)
284 PF13176 TPR_7: Tetratricopept 94.3 0.12 2.6E-06 28.9 4.1 22 439-460 3-24 (36)
285 PF13170 DUF4003: Protein of u 94.3 3.8 8.3E-05 36.7 16.5 133 70-204 78-227 (297)
286 COG3629 DnrI DNA-binding trans 94.3 0.67 1.5E-05 40.5 10.4 79 54-133 153-236 (280)
287 KOG1586 Protein required for f 94.3 2.8 6.1E-05 35.1 16.5 146 344-515 83-241 (288)
288 KOG4234 TPR repeat-containing 94.2 1.4 3.1E-05 35.8 11.1 92 372-465 102-198 (271)
289 PF13929 mRNA_stabil: mRNA sta 94.1 1.6 3.4E-05 38.1 12.1 84 85-168 198-287 (292)
290 PF09205 DUF1955: Domain of un 94.1 1.9 4.1E-05 32.5 13.6 62 197-259 89-150 (161)
291 KOG3941 Intermediate in Toll s 94.0 0.72 1.6E-05 39.6 9.7 117 16-151 64-186 (406)
292 PF02259 FAT: FAT domain; Int 93.9 5.4 0.00012 37.1 20.0 53 271-327 5-57 (352)
293 PF07035 Mic1: Colon cancer-as 93.9 2.8 6E-05 33.5 14.4 101 180-290 15-115 (167)
294 PF08631 SPO22: Meiosis protei 93.7 4.9 0.00011 35.9 25.3 122 30-153 4-150 (278)
295 COG2909 MalT ATP-dependent tra 93.7 9.2 0.0002 39.0 23.5 159 376-534 469-647 (894)
296 PF07719 TPR_2: Tetratricopept 93.6 0.2 4.3E-06 27.4 4.2 27 438-464 4-30 (34)
297 COG3629 DnrI DNA-binding trans 93.4 1.2 2.5E-05 39.1 10.2 75 369-444 157-236 (280)
298 PF13181 TPR_8: Tetratricopept 93.3 0.21 4.6E-06 27.3 4.0 30 506-535 2-31 (34)
299 PRK11619 lytic murein transgly 93.3 10 0.00022 38.4 30.1 117 378-498 254-374 (644)
300 PF06552 TOM20_plant: Plant sp 93.2 1.6 3.4E-05 35.0 9.7 54 417-475 52-117 (186)
301 KOG2471 TPR repeat-containing 93.1 7.9 0.00017 36.5 21.8 64 475-538 624-688 (696)
302 PF09986 DUF2225: Uncharacteri 93.0 1.9 4.1E-05 36.4 10.8 94 411-504 88-199 (214)
303 PF13431 TPR_17: Tetratricopep 93.0 0.18 4E-06 27.7 3.3 31 389-420 3-33 (34)
304 PF10602 RPN7: 26S proteasome 92.9 2.4 5.2E-05 34.6 11.0 96 436-532 37-140 (177)
305 PF13170 DUF4003: Protein of u 92.8 7 0.00015 35.1 20.4 131 211-343 79-226 (297)
306 PF04097 Nic96: Nup93/Nic96; 92.7 12 0.00027 37.7 22.2 43 129-172 116-158 (613)
307 PF09205 DUF1955: Domain of un 92.7 3.4 7.4E-05 31.2 15.1 64 401-465 87-150 (161)
308 PF09613 HrpB1_HrpK: Bacterial 92.6 2.6 5.7E-05 33.2 10.2 82 400-485 7-93 (160)
309 KOG0276 Vesicle coat complex C 92.0 3 6.5E-05 40.2 11.5 159 336-530 616-774 (794)
310 TIGR02561 HrpB1_HrpK type III 91.8 4.5 9.8E-05 31.3 10.3 49 413-465 23-74 (153)
311 COG2976 Uncharacterized protei 91.8 6.3 0.00014 32.2 14.7 56 408-465 134-189 (207)
312 KOG4648 Uncharacterized conser 91.7 0.37 8E-06 42.5 5.0 93 405-501 102-197 (536)
313 COG4785 NlpI Lipoprotein NlpI, 91.5 7.3 0.00016 32.4 16.4 160 299-465 99-267 (297)
314 TIGR02561 HrpB1_HrpK type III 91.1 5.3 0.00012 31.0 10.1 85 446-533 21-121 (153)
315 COG0457 NrfG FOG: TPR repeat [ 90.9 9.4 0.0002 32.6 29.8 201 125-328 60-265 (291)
316 PF11207 DUF2989: Protein of u 90.9 2.8 6E-05 34.5 8.9 72 382-454 123-197 (203)
317 PF13374 TPR_10: Tetratricopep 90.8 0.5 1.1E-05 27.2 3.8 28 506-533 3-30 (42)
318 PF13174 TPR_6: Tetratricopept 90.7 0.41 9E-06 25.8 3.1 24 441-464 6-29 (33)
319 KOG2062 26S proteasome regulat 90.7 20 0.00042 36.0 34.0 120 409-533 510-634 (929)
320 KOG0276 Vesicle coat complex C 90.6 18 0.00038 35.3 15.7 134 301-463 616-749 (794)
321 KOG4570 Uncharacterized conser 90.5 8.1 0.00017 34.1 11.8 103 189-293 59-164 (418)
322 KOG4642 Chaperone-dependent E3 90.5 6.5 0.00014 33.2 10.7 81 378-462 23-105 (284)
323 KOG2396 HAT (Half-A-TPR) repea 90.1 18 0.00038 34.5 39.3 89 440-532 465-557 (568)
324 PRK09687 putative lyase; Provi 90.1 13 0.00029 33.1 27.3 22 406-428 241-262 (280)
325 PF13181 TPR_8: Tetratricopept 90.0 0.61 1.3E-05 25.4 3.5 26 403-428 4-29 (34)
326 PF10345 Cohesin_load: Cohesin 90.0 24 0.00052 35.9 40.0 182 38-220 40-251 (608)
327 cd00923 Cyt_c_Oxidase_Va Cytoc 89.9 3 6.5E-05 29.4 7.1 45 72-116 25-69 (103)
328 KOG4570 Uncharacterized conser 89.7 9.3 0.0002 33.8 11.5 103 224-328 59-164 (418)
329 PF13374 TPR_10: Tetratricopep 89.7 0.83 1.8E-05 26.3 4.1 28 436-463 3-30 (42)
330 COG0790 FOG: TPR repeat, SEL1 89.2 16 0.00036 32.8 21.9 18 311-328 53-70 (292)
331 PF02259 FAT: FAT domain; Int 88.9 20 0.00042 33.4 25.5 64 298-361 145-211 (352)
332 KOG1586 Protein required for f 88.9 13 0.00029 31.4 21.6 145 311-481 85-241 (288)
333 KOG3364 Membrane protein invol 88.8 8.7 0.00019 29.2 9.4 70 432-501 29-103 (149)
334 PF02284 COX5A: Cytochrome c o 88.8 6.9 0.00015 28.0 8.9 44 73-116 29-72 (108)
335 PF06552 TOM20_plant: Plant sp 88.8 11 0.00024 30.4 11.1 75 382-465 52-137 (186)
336 PF07721 TPR_4: Tetratricopept 88.7 0.66 1.4E-05 23.5 2.6 22 508-529 4-25 (26)
337 KOG4648 Uncharacterized conser 88.5 3.2 7E-05 36.9 8.1 93 371-465 103-195 (536)
338 cd00923 Cyt_c_Oxidase_Va Cytoc 88.4 4.1 8.8E-05 28.7 6.9 62 34-96 22-83 (103)
339 PF02284 COX5A: Cytochrome c o 88.3 7.5 0.00016 27.8 9.0 76 21-97 10-87 (108)
340 PF09986 DUF2225: Uncharacteri 88.2 7.6 0.00017 32.9 10.2 94 445-538 87-198 (214)
341 KOG2471 TPR repeat-containing 88.1 24 0.00053 33.5 14.5 101 344-446 250-380 (696)
342 KOG1550 Extracellular protein 88.0 31 0.00067 34.5 26.2 149 105-259 228-394 (552)
343 PF10345 Cohesin_load: Cohesin 88.0 33 0.00072 34.9 43.4 184 2-186 40-252 (608)
344 TIGR03504 FimV_Cterm FimV C-te 87.9 0.75 1.6E-05 27.0 2.8 23 476-498 5-27 (44)
345 PF07163 Pex26: Pex26 protein; 87.8 6.9 0.00015 34.0 9.4 85 407-493 90-181 (309)
346 PF11207 DUF2989: Protein of u 86.9 13 0.00029 30.7 10.2 79 134-214 117-198 (203)
347 PF10579 Rapsyn_N: Rapsyn N-te 86.9 2.5 5.3E-05 28.5 5.0 46 412-457 18-65 (80)
348 smart00028 TPR Tetratricopepti 85.9 1.8 3.9E-05 22.5 3.8 28 507-534 3-30 (34)
349 PF08424 NRDE-2: NRDE-2, neces 85.6 29 0.00063 31.8 14.9 79 382-463 48-130 (321)
350 PF10579 Rapsyn_N: Rapsyn N-te 85.4 2.7 5.8E-05 28.4 4.7 49 447-495 18-68 (80)
351 PRK11619 lytic murein transgly 85.0 48 0.001 33.8 41.2 452 54-539 34-510 (644)
352 PF09670 Cas_Cas02710: CRISPR- 85.0 13 0.00029 34.9 10.9 51 412-463 143-197 (379)
353 COG3947 Response regulator con 84.1 29 0.00063 30.6 16.2 70 231-301 281-355 (361)
354 PRK15180 Vi polysaccharide bio 83.5 42 0.0009 31.9 28.7 86 65-152 334-419 (831)
355 PF14561 TPR_20: Tetratricopep 83.2 14 0.00029 26.1 9.1 49 475-523 27-76 (90)
356 PF13929 mRNA_stabil: mRNA sta 83.0 33 0.00071 30.3 16.8 63 261-323 199-262 (292)
357 KOG0545 Aryl-hydrocarbon recep 82.6 7.2 0.00016 33.1 7.1 98 400-500 178-295 (329)
358 KOG2062 26S proteasome regulat 82.6 58 0.0013 32.9 32.8 470 38-528 42-560 (929)
359 COG4455 ImpE Protein of avirul 82.4 28 0.00061 29.2 10.4 74 368-444 4-81 (273)
360 PF12862 Apc5: Anaphase-promot 82.2 8.7 0.00019 27.4 6.8 22 510-531 46-67 (94)
361 KOG2066 Vacuolar assembly/sort 81.8 64 0.0014 32.9 29.8 101 27-136 364-467 (846)
362 PF04097 Nic96: Nup93/Nic96; 81.0 68 0.0015 32.6 28.6 47 90-138 113-159 (613)
363 KOG4642 Chaperone-dependent E3 80.4 8.1 0.00017 32.7 6.6 115 409-528 19-140 (284)
364 smart00028 TPR Tetratricopepti 80.4 3.4 7.5E-05 21.3 3.5 23 405-427 6-28 (34)
365 TIGR03504 FimV_Cterm FimV C-te 80.1 5.2 0.00011 23.6 4.0 25 25-49 5-29 (44)
366 PRK12798 chemotaxis protein; R 80.0 53 0.0011 30.8 19.6 227 303-540 85-330 (421)
367 COG4455 ImpE Protein of avirul 80.0 35 0.00075 28.7 10.6 72 338-409 5-81 (273)
368 PF00637 Clathrin: Region in C 80.0 0.49 1.1E-05 37.2 -0.3 53 26-78 14-66 (143)
369 COG1747 Uncharacterized N-term 79.9 59 0.0013 31.3 26.0 165 191-362 63-233 (711)
370 KOG0890 Protein kinase of the 79.9 1.3E+02 0.0029 35.3 35.9 51 204-255 1459-1509(2382)
371 PF08311 Mad3_BUB1_I: Mad3/BUB 79.7 20 0.00043 27.3 8.3 43 488-530 81-124 (126)
372 KOG2063 Vacuolar assembly/sort 79.6 86 0.0019 33.0 18.3 27 161-187 506-532 (877)
373 PRK09687 putative lyase; Provi 79.4 46 0.001 29.7 29.8 78 53-136 36-117 (280)
374 PF00637 Clathrin: Region in C 79.2 0.86 1.9E-05 35.8 0.9 83 130-219 13-95 (143)
375 KOG4507 Uncharacterized conser 78.9 19 0.0004 35.1 9.2 115 350-465 589-706 (886)
376 KOG1464 COP9 signalosome, subu 78.6 44 0.00095 29.0 17.5 205 259-464 21-260 (440)
377 KOG3364 Membrane protein invol 78.4 28 0.0006 26.7 9.8 68 397-465 29-101 (149)
378 KOG2581 26S proteasome regulat 78.3 47 0.001 30.9 11.1 60 476-535 215-277 (493)
379 KOG4507 Uncharacterized conser 77.5 7.5 0.00016 37.5 6.3 85 412-500 619-707 (886)
380 KOG0128 RNA-binding protein SA 76.9 95 0.0021 32.0 32.6 28 300-327 313-340 (881)
381 KOG0890 Protein kinase of the 76.3 1.7E+02 0.0036 34.6 33.3 55 476-533 1676-1730(2382)
382 COG3947 Response regulator con 75.9 56 0.0012 28.9 16.7 42 245-288 149-190 (361)
383 COG4259 Uncharacterized protei 75.8 8.8 0.00019 27.1 4.7 48 450-497 52-99 (121)
384 PF12968 DUF3856: Domain of Un 75.7 21 0.00046 26.5 6.8 19 512-530 107-125 (144)
385 KOG0376 Serine-threonine phosp 75.5 4 8.7E-05 38.3 4.1 86 407-497 11-99 (476)
386 PRK10941 hypothetical protein; 75.5 41 0.00088 29.8 10.0 54 440-495 186-240 (269)
387 PF07163 Pex26: Pex26 protein; 75.2 46 0.001 29.2 9.8 87 166-252 90-181 (309)
388 PRK10941 hypothetical protein; 74.7 54 0.0012 29.0 10.6 66 403-470 184-250 (269)
389 PF14561 TPR_20: Tetratricopep 74.7 17 0.00036 25.7 6.2 44 492-537 11-54 (90)
390 PF08311 Mad3_BUB1_I: Mad3/BUB 74.7 27 0.00059 26.6 7.8 43 453-495 81-124 (126)
391 KOG2066 Vacuolar assembly/sort 74.1 1.1E+02 0.0024 31.4 31.1 102 96-206 363-467 (846)
392 PF08424 NRDE-2: NRDE-2, neces 74.1 72 0.0016 29.3 17.2 78 71-150 48-128 (321)
393 PF07575 Nucleopor_Nup85: Nup8 73.9 1E+02 0.0023 31.0 16.6 25 89-114 149-173 (566)
394 KOG1308 Hsp70-interacting prot 73.5 3.6 7.8E-05 36.7 3.1 86 377-465 126-212 (377)
395 PF14853 Fis1_TPR_C: Fis1 C-te 73.0 9.7 0.00021 23.6 4.1 28 474-501 5-33 (53)
396 KOG2659 LisH motif-containing 72.7 48 0.001 28.1 9.1 117 396-514 22-147 (228)
397 PF12862 Apc5: Anaphase-promot 72.0 29 0.00063 24.7 7.1 24 441-464 47-70 (94)
398 KOG4077 Cytochrome c oxidase, 71.9 39 0.00085 25.4 7.5 48 418-465 67-114 (149)
399 KOG1308 Hsp70-interacting prot 71.4 2.9 6.4E-05 37.2 2.1 120 410-536 124-246 (377)
400 COG2909 MalT ATP-dependent tra 71.3 1.4E+02 0.003 31.3 31.6 229 133-361 424-686 (894)
401 PF14853 Fis1_TPR_C: Fis1 C-te 71.2 16 0.00035 22.6 4.7 20 409-428 10-29 (53)
402 KOG4077 Cytochrome c oxidase, 70.7 39 0.00084 25.5 7.2 43 75-117 70-112 (149)
403 COG4259 Uncharacterized protei 70.3 19 0.00041 25.6 5.3 24 441-464 78-101 (121)
404 cd08819 CARD_MDA5_2 Caspase ac 69.3 35 0.00077 23.7 7.2 36 346-382 48-83 (88)
405 KOG2659 LisH motif-containing 68.6 73 0.0016 27.1 10.2 74 7-82 14-92 (228)
406 TIGR02508 type_III_yscG type I 68.4 41 0.0009 24.1 9.0 83 35-127 21-105 (115)
407 PF11848 DUF3368: Domain of un 67.4 25 0.00054 21.2 5.0 34 29-62 12-45 (48)
408 TIGR02508 type_III_yscG type I 67.3 44 0.00095 24.0 8.3 51 409-465 48-98 (115)
409 KOG0991 Replication factor C, 67.0 81 0.0018 27.0 13.2 103 309-434 169-272 (333)
410 cd00280 TRFH Telomeric Repeat 66.5 71 0.0015 26.1 8.8 24 478-501 119-142 (200)
411 COG5159 RPN6 26S proteasome re 65.9 95 0.0021 27.4 14.5 156 375-530 13-190 (421)
412 COG5187 RPN7 26S proteasome re 65.9 96 0.0021 27.4 11.2 23 402-424 117-139 (412)
413 PF02184 HAT: HAT (Half-A-TPR) 65.9 16 0.00035 19.7 3.4 25 415-441 2-26 (32)
414 PF10516 SHNi-TPR: SHNi-TPR; 65.7 15 0.00034 20.8 3.5 28 506-533 2-29 (38)
415 PF07575 Nucleopor_Nup85: Nup8 65.7 1.6E+02 0.0034 29.8 20.5 24 19-43 149-172 (566)
416 PF07720 TPR_3: Tetratricopept 65.5 15 0.00032 20.5 3.4 23 507-529 3-25 (36)
417 PHA02875 ankyrin repeat protei 65.3 1.3E+02 0.0028 28.8 15.8 143 27-182 7-155 (413)
418 PF14689 SPOB_a: Sensor_kinase 65.2 14 0.00031 23.7 3.9 18 443-460 31-48 (62)
419 PHA02875 ankyrin repeat protei 64.7 1E+02 0.0022 29.6 11.3 9 290-298 187-195 (413)
420 PF13762 MNE1: Mitochondrial s 64.6 67 0.0014 25.1 10.2 25 56-80 41-65 (145)
421 KOG2422 Uncharacterized conser 64.3 1.5E+02 0.0033 29.2 19.1 155 372-533 349-515 (665)
422 PF11846 DUF3366: Domain of un 64.0 50 0.0011 27.5 8.0 43 421-465 132-174 (193)
423 PF04910 Tcf25: Transcriptiona 63.4 1.3E+02 0.0028 28.1 19.9 153 372-532 110-290 (360)
424 KOG0376 Serine-threonine phosp 63.2 19 0.00042 34.0 5.7 97 372-475 11-109 (476)
425 PF13934 ELYS: Nuclear pore co 63.2 98 0.0021 26.6 10.6 21 95-115 114-134 (226)
426 COG0790 FOG: TPR repeat, SEL1 62.8 1.2E+02 0.0025 27.3 23.7 169 276-484 53-236 (292)
427 PF14689 SPOB_a: Sensor_kinase 62.4 33 0.00072 22.1 5.2 22 304-325 28-49 (62)
428 PF11846 DUF3366: Domain of un 61.6 22 0.00047 29.6 5.4 64 18-83 107-173 (193)
429 PRK12798 chemotaxis protein; R 61.3 1.5E+02 0.0032 28.0 23.5 185 312-499 125-324 (421)
430 TIGR02710 CRISPR-associated pr 60.6 1.5E+02 0.0032 27.8 11.5 52 409-460 139-196 (380)
431 PF13762 MNE1: Mitochondrial s 60.5 81 0.0017 24.7 9.5 89 14-102 32-128 (145)
432 cd00280 TRFH Telomeric Repeat 59.8 83 0.0018 25.7 7.8 20 63-82 120-139 (200)
433 PF09670 Cas_Cas02710: CRISPR- 59.8 1.6E+02 0.0034 27.9 12.0 56 27-83 139-198 (379)
434 KOG1464 COP9 signalosome, subu 59.3 1.2E+02 0.0027 26.5 19.5 60 198-257 149-219 (440)
435 cd08819 CARD_MDA5_2 Caspase ac 59.0 59 0.0013 22.7 7.3 65 38-108 21-85 (88)
436 PF11663 Toxin_YhaV: Toxin wit 58.2 8.9 0.00019 29.1 2.2 27 514-540 104-130 (140)
437 PHA02537 M terminase endonucle 58.0 93 0.002 26.7 8.4 91 445-535 93-208 (230)
438 KOG4814 Uncharacterized conser 57.1 1.7E+02 0.0038 29.3 10.7 84 377-463 366-456 (872)
439 KOG2297 Predicted translation 57.0 1.5E+02 0.0032 26.6 18.9 21 299-319 321-341 (412)
440 smart00386 HAT HAT (Half-A-TPR 56.7 27 0.00059 18.1 4.0 13 381-393 3-15 (33)
441 PF10255 Paf67: RNA polymerase 56.4 23 0.00049 33.3 5.0 55 476-530 128-189 (404)
442 KOG0551 Hsp90 co-chaperone CNS 56.2 1.2E+02 0.0027 27.5 8.9 95 400-497 81-180 (390)
443 KOG0292 Vesicle coat complex C 56.2 1.2E+02 0.0025 31.7 9.8 155 341-533 627-781 (1202)
444 smart00777 Mad3_BUB1_I Mad3/BU 55.6 90 0.002 23.7 9.0 21 508-528 102-122 (125)
445 COG0735 Fur Fe2+/Zn2+ uptake r 55.1 90 0.0019 24.5 7.5 50 147-197 9-58 (145)
446 PF11663 Toxin_YhaV: Toxin wit 54.3 12 0.00027 28.4 2.4 28 33-62 109-136 (140)
447 COG5191 Uncharacterized conser 54.1 38 0.00081 30.2 5.5 85 9-95 97-182 (435)
448 PF11817 Foie-gras_1: Foie gra 54.0 79 0.0017 27.7 7.8 23 440-462 183-205 (247)
449 COG5108 RPO41 Mitochondrial DN 53.6 1.1E+02 0.0023 30.7 8.9 90 199-291 33-130 (1117)
450 PF12793 SgrR_N: Sugar transpo 53.2 94 0.002 23.2 7.1 26 504-529 69-94 (115)
451 KOG1497 COP9 signalosome, subu 53.1 1.4E+02 0.003 27.0 8.7 106 435-540 103-219 (399)
452 PF11838 ERAP1_C: ERAP1-like C 53.1 1.8E+02 0.0039 26.5 16.4 131 70-206 146-287 (324)
453 KOG3636 Uncharacterized conser 52.8 1.3E+02 0.0028 28.4 8.9 85 430-516 178-271 (669)
454 PF11848 DUF3368: Domain of un 52.5 50 0.0011 19.9 4.9 21 140-160 18-38 (48)
455 smart00777 Mad3_BUB1_I Mad3/BU 52.5 1E+02 0.0022 23.5 8.9 41 419-459 82-123 (125)
456 PF04910 Tcf25: Transcriptiona 52.4 2E+02 0.0044 26.9 17.9 90 442-533 110-221 (360)
457 COG1747 Uncharacterized N-term 52.0 2.4E+02 0.0052 27.6 25.3 179 121-307 63-247 (711)
458 KOG4567 GTPase-activating prot 51.9 1.5E+02 0.0033 26.6 8.7 57 284-345 263-319 (370)
459 PF11817 Foie-gras_1: Foie gra 51.0 88 0.0019 27.3 7.7 58 475-532 183-245 (247)
460 KOG2908 26S proteasome regulat 49.6 2.1E+02 0.0045 26.2 9.3 51 446-496 86-141 (380)
461 PF09454 Vps23_core: Vps23 cor 49.3 45 0.00096 21.8 4.1 51 16-67 5-55 (65)
462 COG5108 RPO41 Mitochondrial DN 49.1 1.8E+02 0.0038 29.4 9.5 91 94-187 33-131 (1117)
463 COG0735 Fur Fe2+/Zn2+ uptake r 48.3 1.3E+02 0.0028 23.7 7.4 60 389-449 10-69 (145)
464 PRK10564 maltose regulon perip 48.2 42 0.00091 29.9 5.0 36 267-302 260-295 (303)
465 PRK10564 maltose regulon perip 48.2 42 0.00091 29.9 5.0 30 22-51 260-289 (303)
466 KOG0545 Aryl-hydrocarbon recep 47.9 1.9E+02 0.004 25.1 10.3 53 375-428 240-292 (329)
467 PF00244 14-3-3: 14-3-3 protei 47.9 1.9E+02 0.004 25.1 11.7 40 235-274 7-46 (236)
468 KOG0687 26S proteasome regulat 46.5 2.3E+02 0.005 25.8 12.6 131 396-530 66-206 (393)
469 COG4941 Predicted RNA polymera 46.3 2.4E+02 0.0051 25.9 14.8 116 415-534 271-394 (415)
470 PF09454 Vps23_core: Vps23 cor 45.6 55 0.0012 21.4 4.1 46 298-344 7-52 (65)
471 PF13934 ELYS: Nuclear pore co 45.3 2E+02 0.0043 24.8 12.3 111 12-136 72-184 (226)
472 KOG4567 GTPase-activating prot 44.3 1.7E+02 0.0036 26.4 7.8 71 144-219 263-343 (370)
473 PF00244 14-3-3: 14-3-3 protei 44.0 2.2E+02 0.0047 24.8 12.0 39 306-344 8-46 (236)
474 PF09477 Type_III_YscG: Bacter 42.1 1.4E+02 0.003 22.0 9.5 79 209-294 21-99 (116)
475 PF03745 DUF309: Domain of unk 41.9 95 0.0021 20.0 5.5 48 29-76 9-61 (62)
476 PF04190 DUF410: Protein of un 41.9 2.5E+02 0.0054 24.8 17.4 21 514-534 150-170 (260)
477 PF04190 DUF410: Protein of un 41.0 2.6E+02 0.0055 24.8 16.9 88 25-112 16-113 (260)
478 PF10366 Vps39_1: Vacuolar sor 41.0 1.5E+02 0.0031 21.9 7.7 26 162-187 42-67 (108)
479 KOG0551 Hsp90 co-chaperone CNS 40.8 2E+02 0.0043 26.3 7.9 92 371-464 87-182 (390)
480 PF10366 Vps39_1: Vacuolar sor 40.7 1.5E+02 0.0032 21.9 7.4 26 57-82 42-67 (108)
481 PRK09857 putative transposase; 40.6 2.8E+02 0.006 25.1 9.2 58 481-539 217-274 (292)
482 PRK15180 Vi polysaccharide bio 40.5 3.5E+02 0.0076 26.2 31.7 90 98-189 332-421 (831)
483 PRK11639 zinc uptake transcrip 39.0 1.2E+02 0.0027 24.5 6.2 65 3-68 10-74 (169)
484 PF09868 DUF2095: Uncharacteri 39.0 1.3E+02 0.0029 22.1 5.4 25 25-49 67-91 (128)
485 PF09477 Type_III_YscG: Bacter 38.9 1.6E+02 0.0034 21.7 10.4 79 34-119 21-99 (116)
486 KOG3807 Predicted membrane pro 38.8 3E+02 0.0066 25.0 14.8 53 406-460 281-336 (556)
487 PF04090 RNA_pol_I_TF: RNA pol 38.7 2.4E+02 0.0051 23.7 12.4 31 486-516 158-189 (199)
488 PRK13800 putative oxidoreducta 38.2 5.6E+02 0.012 27.9 27.9 277 191-501 606-883 (897)
489 PF04348 LppC: LppC putative l 37.8 11 0.00023 37.4 0.0 86 406-491 30-119 (536)
490 cd02679 MIT_spastin MIT: domai 37.7 78 0.0017 21.7 4.0 13 520-532 54-66 (79)
491 PRK08691 DNA polymerase III su 37.4 5E+02 0.011 27.0 11.5 72 49-123 195-279 (709)
492 KOG1839 Uncharacterized protei 37.3 5.4E+02 0.012 28.6 11.7 156 375-530 942-1124(1236)
493 KOG0687 26S proteasome regulat 36.5 3.4E+02 0.0073 24.8 15.4 20 372-391 111-130 (393)
494 cd07153 Fur_like Ferric uptake 36.4 74 0.0016 23.6 4.4 44 25-68 6-49 (116)
495 COG4003 Uncharacterized protei 36.2 77 0.0017 21.6 3.6 27 24-50 36-62 (98)
496 KOG2300 Uncharacterized conser 35.8 4.2E+02 0.0092 25.8 35.1 433 29-495 57-552 (629)
497 KOG2034 Vacuolar sorting prote 35.8 5.6E+02 0.012 27.2 26.2 50 132-187 366-417 (911)
498 KOG2034 Vacuolar sorting prote 35.7 5.6E+02 0.012 27.2 25.2 49 27-81 366-416 (911)
499 PF11838 ERAP1_C: ERAP1-like C 35.2 3.5E+02 0.0076 24.7 19.8 110 140-254 146-262 (324)
500 KOG1310 WD40 repeat protein [G 34.7 1.8E+02 0.0039 28.4 7.1 81 451-534 390-474 (758)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-70 Score=551.07 Aligned_cols=519 Identities=16% Similarity=0.263 Sum_probs=488.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 038401 15 YSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGI-APDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYS 93 (542)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 93 (542)
-.++...|..++..+++.|++++|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+++.|.. |+..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 456788899999999999999999999999999986 46777888999999999999999999999964 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Q 038401 94 NLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENH 173 (542)
Q Consensus 94 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 173 (542)
.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH--CCCCCChhHHHHHHHHHHhcCcHHHHHHH
Q 038401 174 KFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRK--MGIDPSVVSYNTLLRVYGEAELFGEAIHL 251 (542)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 251 (542)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038401 252 FRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVE 331 (542)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 331 (542)
|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 038401 332 IDPVLYQTMIVAYERVGLVAHAKRLLHELR----QPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMI 407 (542)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 407 (542)
|+..+|+.++.+|++.|++++|.++|++|. .++...|+.++.+|++.|++++|.++|++|.+.|..||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 4778889999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----c-------------------CcHHHHHHHHHHHHHc
Q 038401 408 ELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGK----L-------------------REFETADDLYSEMQEE 464 (542)
Q Consensus 408 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~ 464 (542)
.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999876432 1 2347899999999999
Q ss_pred CCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCCCC
Q 038401 465 GCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRTFNSS 540 (542)
Q Consensus 465 ~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 540 (542)
| ..|+..++. ++.++...+..+.+..+++.+...+.......|..+++.++. ..++|..++++|...|+.|+-
T Consensus 842 G-i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 842 G-TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred C-CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCc
Confidence 8 668888888 778888999999999999998877777677889999998732 236899999999999999974
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.1e-70 Score=558.81 Aligned_cols=505 Identities=17% Similarity=0.255 Sum_probs=369.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 038401 15 YSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSN 94 (542)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 94 (542)
+.||+.+|+.++..|++.|++++|..+|+.|.+ ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.
T Consensus 218 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ 293 (857)
T PLN03077 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293 (857)
T ss_pred CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 334444445555555555666666666655543 3555666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Q 038401 95 LIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHK 174 (542)
Q Consensus 95 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 174 (542)
++.+|.+.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|++++.+|++.|+
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCC
Confidence 6666666666666666666666666666666666666666666666666666666642 456666666666666666
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHH
Q 038401 175 FVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRL 254 (542)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 254 (542)
+++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|+.
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038401 255 MQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDP 334 (542)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (542)
|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++.
T Consensus 450 m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 450 IPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred CCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 653 4556666666666666777777777777764 46778888888888888888888888888888887888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 038401 335 VLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNK 414 (542)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 414 (542)
.++++++.+|+++|++++|.++|+.+ .++..+|+.++.+|.+.|+.++|+++|++|.+.|..||..+|+.++.+|.+.|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 88888888888888888888888888 77888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHH
Q 038401 415 KYANVIEVFEKMR-SAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESL 492 (542)
Q Consensus 415 ~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~ 492 (542)
++++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|. ..|+...|. ++.+|...|+.+.+...
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~----~~pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP----ITPDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 8888888888888 56888888888888888888888888888888873 346666666 78888888888888877
Q ss_pred HHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCCC
Q 038401 493 FERL-DSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRTFNS 539 (542)
Q Consensus 493 ~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 539 (542)
.+++ ..+|+ +...|..++++|...|+|++|.++.+.|.++|+.++
T Consensus 680 a~~l~~l~p~--~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 680 AQHIFELDPN--SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHHHHhhCCC--CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 7774 34444 557899999999999999999999999999999874
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-69 Score=555.95 Aligned_cols=516 Identities=21% Similarity=0.282 Sum_probs=443.1
Q ss_pred hhhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038401 2 SVAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQME 81 (542)
Q Consensus 2 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 81 (542)
|.++++.+. ..+..+++..+|.++..|++.|+++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|+++|++|.
T Consensus 105 a~~~~~~~~-~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~ 179 (857)
T PLN03077 105 GSRVCSRAL-SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRML 179 (857)
T ss_pred HHHHHHHHH-HcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344555555 345667777788888889999999999999998864 688899999999999999999999999999
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHH
Q 038401 82 QDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVS 161 (542)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 161 (542)
..|+.||..+|+.++.+|...+++..+.+++..+.+.|+.|+..+++.|+.+|++.|+++.|.++|++|.. ||..+
T Consensus 180 ~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s 255 (857)
T PLN03077 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCIS 255 (857)
T ss_pred HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999974 68899
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 038401 162 YSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGE 241 (542)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 241 (542)
|++++.+|++.|++++|+++|.+|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++
T Consensus 256 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038401 242 AELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAML 321 (542)
Q Consensus 242 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 321 (542)
.|++++|.++|+.|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++
T Consensus 336 ~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 336 LGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred cCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 999999999999986 4688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHH
Q 038401 322 FQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDIS 401 (542)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 401 (542)
++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.+++..+|+.++.+|.+.|+.++|+.+|++|... ..||..
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~ 490 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSV 490 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999763 677777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------------------CCCHHHHHHHHHHHhccCcH
Q 038401 402 VFGCMIELFSRNKKYANVIEVFEKMRSAGY------------------------------FPDSHIIALVLNSYGKLREF 451 (542)
Q Consensus 402 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------------------~p~~~~~~~l~~~~~~~g~~ 451 (542)
+|+.++.+|++.|+.+.+.+++..+.+.|+ .||..+|+.++.+|.+.|+.
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCH
Confidence 666555544444444444433333333322 35666777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHhhcchhhHHHHHH
Q 038401 452 ETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDS-DSNINKKELHHVVAGIYERANRLNDASRIMN 529 (542)
Q Consensus 452 ~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 529 (542)
++|.++|++|.+.+ ..|+..++. ++.+|.+.|++++|.++|+.|.. .+..++...|..++++|++.|++++|.++++
T Consensus 571 ~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 571 SMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHcC-CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 77777777777766 456666666 77777777777777777777763 3333334677777777777777777777777
Q ss_pred HHH
Q 038401 530 RMN 532 (542)
Q Consensus 530 ~~~ 532 (542)
+|+
T Consensus 650 ~m~ 652 (857)
T PLN03077 650 KMP 652 (857)
T ss_pred HCC
Confidence 774
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-67 Score=528.27 Aligned_cols=493 Identities=17% Similarity=0.272 Sum_probs=461.4
Q ss_pred ChhhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 038401 1 RSVAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQM 80 (542)
Q Consensus 1 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 80 (542)
+|+++|++|.+..-++++...++.++..|.+.|.+++|..+|+.|.. |+..+|+.++.+|++.|+++.|.++|+.|
T Consensus 388 eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M 463 (1060)
T PLN03218 388 DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLV 463 (1060)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 37899999986654678888999999999999999999999999875 89999999999999999999999999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHH
Q 038401 81 EQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTV 160 (542)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 160 (542)
.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHh--cCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 038401 161 SYSTLLNLYVENHKFVEALSVFAEMNE--VNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRV 238 (542)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 238 (542)
+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 999999999999999999999999976 578999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038401 239 YGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRA 318 (542)
Q Consensus 239 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 318 (542)
|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|
T Consensus 624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC----CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 038401 319 AMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ----PNTIPRETAITILARAGRIEEATWVFRQAFDA 394 (542)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 394 (542)
.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. |+..++..++.+|.+.|+++.|.+++.+|.+.
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999874 67777899999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHh-----------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 038401 395 GEVKDISVFGCMIELFSR-----------------------NKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREF 451 (542)
Q Consensus 395 ~~~~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 451 (542)
|..||..+|+.++..|.+ .+..++|..+|++|++.|+.||..||+.++.++...+..
T Consensus 784 Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~ 863 (1060)
T PLN03218 784 GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDA 863 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccH
Confidence 999999999999876432 123467999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhcCC
Q 038401 452 ETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDSDS 500 (542)
Q Consensus 452 ~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~ 500 (542)
+.+..+++.+...+ ..|+..+|. ++..+.+. .++|..+++.+...+
T Consensus 864 ~~~~~m~~~m~~~~-~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 864 TLRNRLIENLGISA-DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHHhccCC-CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 99999988887655 456667777 88877432 468999999986543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.1e-65 Score=508.24 Aligned_cols=474 Identities=19% Similarity=0.267 Sum_probs=449.5
Q ss_pred CCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHH
Q 038401 52 PDRYTYSTLITCFGKEGMFDSAISWLQQMEQDR-VSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTM 130 (542)
Q Consensus 52 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 130 (542)
++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 355689999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCH
Q 038401 131 INVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMA 210 (542)
Q Consensus 131 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (542)
+.+|++.|+++.|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|+..|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999974 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038401 211 KDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEM 290 (542)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (542)
+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|+.++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 468999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHH
Q 038401 291 QNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRET 370 (542)
Q Consensus 291 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (542)
.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++++.+|++.|++++|.++|++|.+++..+|+.
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccC
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRS-AGYFPDSHIIALVLNSYGKLR 449 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g 449 (542)
++.+|++.|+.++|.++|++|.+.|..||..+|+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986 599999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHH
Q 038401 450 EFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIM 528 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 528 (542)
++++|.++++++. ..|+...|. ++.+|...|+++.|..+++++... .+.+...|..++++|.+.|+|++|.+++
T Consensus 477 ~~~eA~~~~~~~~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~-~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 477 LLDEAYAMIRRAP----FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM-GPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC-CCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 9999999988763 456777777 999999999999999999996432 2224568999999999999999999999
Q ss_pred HHHHhcCCCC
Q 038401 529 NRMNKRRTFN 538 (542)
Q Consensus 529 ~~~~~~~~~~ 538 (542)
++|+++|+.+
T Consensus 552 ~~m~~~g~~k 561 (697)
T PLN03081 552 ETLKRKGLSM 561 (697)
T ss_pred HHHHHcCCcc
Confidence 9999999865
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-62 Score=491.28 Aligned_cols=507 Identities=15% Similarity=0.218 Sum_probs=456.1
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 038401 16 SPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRG-IAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSN 94 (542)
Q Consensus 16 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 94 (542)
.++..+|+.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4455689999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Q 038401 95 LIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHK 174 (542)
Q Consensus 95 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 174 (542)
++..|.+.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999997 589999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHH
Q 038401 175 FVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRL 254 (542)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 254 (542)
.+.+.+++..+.+.|+.+|..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 57899999999999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038401 255 MQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDP 334 (542)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (542)
|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864 688
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcC----CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHH-cCCCcCHHHHHHHHHH
Q 038401 335 VLYQTMIVAYERVGLVAHAKRLLHELRQ----PNTIPRETAITILARAGRIEEATWVFRQAFD-AGEVKDISVFGCMIEL 409 (542)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~ 409 (542)
.+|+.++.+|++.|+.++|.++|++|.. |+..++..++.+|.+.|..++|.++|+.|.+ .|..|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 9999999999999999999999999874 6777788999999999999999999999986 5889999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHH
Q 038401 410 FSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNM 488 (542)
Q Consensus 410 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~ 488 (542)
|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.+ |.+...|. ++.+|.+.|++++
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~--p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG--PEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC--CCCCcchHHHHHHHHhCCCHHH
Confidence 99999999999998876 578999999999999999999999999999998765 33445666 8999999999999
Q ss_pred HHHHHHHHhcCCCCC-chhHHHHH---------HHH-H-HhhcchhhHHHHHHHHHhcCCCCC
Q 038401 489 LESLFERLDSDSNIN-KKELHHVV---------AGI-Y-ERANRLNDASRIMNRMNKRRTFNS 539 (542)
Q Consensus 489 A~~~~~~~~~~~~~~-~~~~~~~l---------~~~-~-~~~g~~~~A~~~~~~~~~~~~~~~ 539 (542)
|.++++.|...+-.. |...|..+ ++. + ....-++...++..+|.+.|-.|+
T Consensus 547 A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~ 609 (697)
T PLN03081 547 AAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAE 609 (697)
T ss_pred HHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999987654221 11111100 000 0 001124555678888888887775
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.3e-34 Score=303.62 Aligned_cols=514 Identities=13% Similarity=0.067 Sum_probs=299.0
Q ss_pred hhhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038401 2 SVAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQME 81 (542)
Q Consensus 2 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 81 (542)
|++.++.+.+. .+.+...+..+...+.+.|++++|.+.|+.+.+.+. .+...+..+...+...|++++|++.++.+.
T Consensus 348 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 348 AIATLSPALGL--DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 44555555433 234455666667777777777777777777666532 244555555566666666666666666555
Q ss_pred hCCC---------------------------------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHH
Q 038401 82 QDRV---------------------------------SGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYN 128 (542)
Q Consensus 82 ~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 128 (542)
+..+ +.+..++..+...+...|++++|.+.|+++.+.. +.+...+.
T Consensus 425 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 503 (899)
T TIGR02917 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAA 503 (899)
T ss_pred hhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHH
Confidence 4432 2234444445555555555555555555554432 22333444
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccC
Q 038401 129 TMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLD 208 (542)
Q Consensus 129 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 208 (542)
.+...+...|++++|.+.++++...+ +.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..+...|
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC
Confidence 44455555555555555555554432 2244455555555555555555555555554443 234444555555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 038401 209 MAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQ 288 (542)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (542)
++++|..+++.+.+.. +.+..+|..+..++...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...++
T Consensus 582 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 582 QLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666655433 3445556666666666666666666666665543 2344555566666666666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC--CCCC
Q 038401 289 EMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ--PNTI 366 (542)
Q Consensus 289 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~ 366 (542)
++.+.. +.+..++..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|...++.+.. ++..
T Consensus 660 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 737 (899)
T TIGR02917 660 RALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ 737 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch
Confidence 665542 2235556666666666666666666666665553 34555566666666666777777766666543 2233
Q ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 038401 367 PRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYG 446 (542)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 446 (542)
.+..++.++.+.|++++|.+.++++++.. +.+...+..++..|...|++++|.+.|+++.+.. +++...+..++..+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34445566666677777777777766653 3456666667777777777777777777776642 234566666677777
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHhhcchhhH
Q 038401 447 KLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDS-DSNINKKELHHVVAGIYERANRLNDA 524 (542)
Q Consensus 447 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A 524 (542)
..|+ .+|+.+++++.+..+ .+...+. ++.++...|++++|.+.++++.. .|. +..++..++.+|...|++++|
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAP--NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE--AAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHH
Confidence 7777 667777777766541 2222222 66677777777777777777433 332 456677777777777777777
Q ss_pred HHHHHHHH
Q 038401 525 SRIMNRMN 532 (542)
Q Consensus 525 ~~~~~~~~ 532 (542)
.+++++|.
T Consensus 891 ~~~~~~~~ 898 (899)
T TIGR02917 891 RKELDKLL 898 (899)
T ss_pred HHHHHHHh
Confidence 77777765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.8e-34 Score=300.07 Aligned_cols=517 Identities=12% Similarity=0.060 Sum_probs=321.2
Q ss_pred hhhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038401 2 SVAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQME 81 (542)
Q Consensus 2 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 81 (542)
|.+.|+.+.+.. +.+...+..+...+.+.|++++|...++.+...+. .+...+..+...+.+.|++++|.++|+++.
T Consensus 314 A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 390 (899)
T TIGR02917 314 AYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKAT 390 (899)
T ss_pred HHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677788877543 45667788889999999999999999999988753 477889999999999999999999999998
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHH
Q 038401 82 QDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVS 161 (542)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 161 (542)
+..+ .+...+..+...+...|++++|.+.++.+.+.. +........++..+.+.|++++|..+++.+... .+++..+
T Consensus 391 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 467 (899)
T TIGR02917 391 ELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASL 467 (899)
T ss_pred hcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHH
Confidence 8643 366677778888888888888888888877653 222334444555556666666666666665543 2334455
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHH-----
Q 038401 162 YSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLL----- 236 (542)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll----- 236 (542)
+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+...+ +.+..++..+.
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 5555555555566666665555555432 2233444444555555555555555555554432 23334444444
Q ss_pred -----------------------------HHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHH
Q 038401 237 -----------------------------RVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLM 287 (542)
Q Consensus 237 -----------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (542)
..+...|++++|..+++.+.... +.+...|..+...+...|++++|...+
T Consensus 546 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444555555555554444332 234445555555555555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCC---
Q 038401 288 QEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPN--- 364 (542)
Q Consensus 288 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 364 (542)
+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.++++.+....
T Consensus 625 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 702 (899)
T TIGR02917 625 KKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA 702 (899)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence 5554432 2233444555555555555555555555555432 2334555555555555555555555555554322
Q ss_pred CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038401 365 TIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNS 444 (542)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 444 (542)
...+..+...+...|++++|.+.|+++.+.. |+..++..++.++...|++++|.+.++++.+.. +.+...+..++..
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 779 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL 779 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 2223334555666677777777777666643 333555566666677777777777777766632 2345666667777
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchh
Q 038401 445 YGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIYERANRLN 522 (542)
Q Consensus 445 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~ 522 (542)
|...|++++|...|+++.+.. |++...+. ++.++...|+ .+|+.++++. ...|+ +...+..++.+|...|+++
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN--IPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHH
Confidence 777777777777777777765 23333333 6777777777 6677777774 33333 3456777888888889999
Q ss_pred hHHHHHHHHHhcCCC
Q 038401 523 DASRIMNRMNKRRTF 537 (542)
Q Consensus 523 ~A~~~~~~~~~~~~~ 537 (542)
+|.++++++.+.+..
T Consensus 855 ~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 855 RALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHhhCCC
Confidence 999999998887653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.4e-26 Score=242.32 Aligned_cols=518 Identities=13% Similarity=0.053 Sum_probs=337.5
Q ss_pred hhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhH----------------HHHHHHHhc
Q 038401 3 VAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTY----------------STLITCFGK 66 (542)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~ 66 (542)
.+.++.+... -+.|+..+..++..+.+.|+.++|.+.++++.+..+. +...+ ......+..
T Consensus 48 ~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~ 124 (1157)
T PRK11447 48 RQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLAT 124 (1157)
T ss_pred HHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 3444444432 2335666777777788888888888888888776422 22222 223345677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHH
Q 038401 67 EGMFDSAISWLQQMEQDRVSGDLV-LYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARL 145 (542)
Q Consensus 67 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 145 (542)
.|++++|++.|+.+.+.+++ +.. ....+.......|+.++|.+.++++.+.. +.+...+..+...+...|+.++|+.
T Consensus 125 ~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~ 202 (1157)
T PRK11447 125 TGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFA 202 (1157)
T ss_pred CCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHH
Confidence 78888888888887765422 321 11111222234577888888888877763 3456666777777777788888888
Q ss_pred HHHHHHHcCC------------------C--------------CCHHHH---------------------HHHHHHHHHC
Q 038401 146 LIEEMREQGV------------------K--------------PDTVSY---------------------STLLNLYVEN 172 (542)
Q Consensus 146 ~~~~~~~~g~------------------~--------------~~~~~~---------------------~~l~~~~~~~ 172 (542)
.++++..... . |+.... ......+...
T Consensus 203 ~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~ 282 (1157)
T PRK11447 203 VLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDS 282 (1157)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHC
Confidence 7777644210 0 000000 0112345567
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-ChhHHH------------HHHHHH
Q 038401 173 HKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDP-SVVSYN------------TLLRVY 239 (542)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~ll~~~ 239 (542)
|++++|+..|++..+.. |.+...+..+..++.+.|++++|...|++..+..... ....+. .....+
T Consensus 283 g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 88888888888877754 3466777777788888888888888888877653111 111111 123345
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------
Q 038401 240 GEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYST--------------- 304 (542)
Q Consensus 240 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~--------------- 304 (542)
.+.|++++|...|+++.... +.+...+..+...+...|++++|++.|++..+.. +.+...+..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHH
Confidence 67778888888888777764 3355566667777777888888888877776542 112222211
Q ss_pred ---------------------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038401 305 ---------------------------IIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLL 357 (542)
Q Consensus 305 ---------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (542)
+...+...|++++|+..|+++++.. +-+...+..+...|.+.|++++|...+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2233445678888888888887764 335667777777888888888888888
Q ss_pred HHhcCCCCCCH---HH--------------------------------------------HHHHHHHhCCHHHHHHHHHH
Q 038401 358 HELRQPNTIPR---ET--------------------------------------------AITILARAGRIEEATWVFRQ 390 (542)
Q Consensus 358 ~~~~~~~~~~~---~~--------------------------------------------l~~~~~~~g~~~~A~~~~~~ 390 (542)
+++...++... .. ....+...|+.++|..+++.
T Consensus 519 ~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 519 RRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 87654222211 11 12233445555566555551
Q ss_pred HHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCc
Q 038401 391 AFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFS 469 (542)
Q Consensus 391 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 469 (542)
.+.++..+..+...+.+.|++++|+..|+++++. .| +...+..++..|...|++++|++.++.+.+.. +.
T Consensus 599 -----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~ 669 (1157)
T PRK11447 599 -----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--ND 669 (1157)
T ss_pred -----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CC
Confidence 3456667778889999999999999999999984 45 56888899999999999999999999988765 12
Q ss_pred hHH-HHHHHHHHhccCChHHHHHHHHHHhcC-CCCCc----hhHHHHHHHHHHhhcchhhHHHHHHHHHh-cCCCC
Q 038401 470 DQV-HFQMLSLYGARKDFNMLESLFERLDSD-SNINK----KELHHVVAGIYERANRLNDASRIMNRMNK-RRTFN 538 (542)
Q Consensus 470 ~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 538 (542)
+.. ...++.++...|++++|.+.++++... +...+ ...+..++.++...|++++|+++|+++.. .|+.|
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 222 233888999999999999999996543 22211 24566779999999999999999999753 34443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.8e-24 Score=226.71 Aligned_cols=503 Identities=13% Similarity=0.042 Sum_probs=335.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhH---------
Q 038401 22 YNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLY--------- 92 (542)
Q Consensus 22 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------- 92 (542)
.-..++.+...++.+.|.+.++++....+. ++..+..++..+.+.|+.++|.+.++++.+..+. +....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 455567778899999999999999987543 7888999999999999999999999999987533 32221
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHh-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038401 93 -------SNLIELARKLSDYSKAISIFSRLKSSGIVPDLV-AYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYST 164 (542)
Q Consensus 93 -------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 164 (542)
..+...+...|++++|.+.|+.+.+.+ +|+.. ....+.......|+.++|.+.++++.... +.+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 333456888999999999999998764 34432 11112222335699999999999999874 336777888
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhcCC----------------CCChh---hH----------------------------
Q 038401 165 LLNLYVENHKFVEALSVFAEMNEVNC----------------PLDLT---TC---------------------------- 197 (542)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~----------------~~~~~---~~---------------------------- 197 (542)
+...+...|+.++|++.++++..... +++.. .+
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998754321 00000 00
Q ss_pred ------HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-cHHHH---
Q 038401 198 ------NIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQ-NVVTY--- 267 (542)
Q Consensus 198 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--- 267 (542)
......+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+..... ....|
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 011334567789999999999988764 4477788888899999999999999999888764322 11112
Q ss_pred ---------HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038401 268 ---------NTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQ 338 (542)
Q Consensus 268 ---------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (542)
......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 122445678899999999999988763 3355667778888999999999999999988764 22344443
Q ss_pred HHHHH------------------------------------------HHHcCCHHHHHHHHHHhcCCCCC---CHHHHHH
Q 038401 339 TMIVA------------------------------------------YERVGLVAHAKRLLHELRQPNTI---PRETAIT 373 (542)
Q Consensus 339 ~l~~~------------------------------------------~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~ 373 (542)
.+... +...|++++|.+.+++..+.++. .+..+..
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~ 503 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33333 33455566666666555443222 2233455
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------------------
Q 038401 374 ILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA------------------------ 429 (542)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------ 429 (542)
.+.+.|++++|...++++++..+ .++..+..+...+...+++++|+..++++...
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 55666666666666666655422 23333322222233333333333333221100
Q ss_pred ---------------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHH
Q 038401 430 ---------------GYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLF 493 (542)
Q Consensus 430 ---------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~ 493 (542)
..+++...+..+...+.+.|++++|+..|+++++.. |.+..... ++.++...|++++|++.+
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 011233445556677778888888888888888875 22233333 778888888888888888
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 494 ERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
+++..... .+...+..++.++...|++++|.++++++....
T Consensus 661 ~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 661 AKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88643321 234566778888888888888888888877653
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.9e-22 Score=203.19 Aligned_cols=230 Identities=10% Similarity=0.004 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC--CCCCHHHHHHHHH
Q 038401 299 AITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQP--NTIPRETAITILA 376 (542)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~ 376 (542)
...|..+..++.. ++.++|...+...... .|+......+...+...|++++|...++++... ....+..+..++.
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all 553 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 3444555555544 6777788877777665 355444444455556899999999999887653 2223445566778
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 038401 377 RAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADD 456 (542)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 456 (542)
+.|++++|...++++++.. +.+...+..+.......|++++|+..+++.++ ..|+...+..+..++.+.|++++|+.
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8999999999999998864 23344444444445566999999999999998 55788889999999999999999999
Q ss_pred HHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhc
Q 038401 457 LYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 534 (542)
.++++++.. |.+..... ++.++...|++++|+..+++ +...|+ ...++..++.+|...|++++|+..+++..+.
T Consensus 631 ~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~--~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 631 DLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD--DPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999987 23333333 88899999999999999999 455555 5678999999999999999999999999876
Q ss_pred CCCC
Q 038401 535 RTFN 538 (542)
Q Consensus 535 ~~~~ 538 (542)
....
T Consensus 707 ~P~~ 710 (987)
T PRK09782 707 IDNQ 710 (987)
T ss_pred CCCC
Confidence 6433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1e-21 Score=198.10 Aligned_cols=503 Identities=10% Similarity=0.040 Sum_probs=339.1
Q ss_pred hhhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038401 2 SVAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQME 81 (542)
Q Consensus 2 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 81 (542)
|+..|+...+.. +-+..++..+...|.+.|++++|+..+++..+.. |+-..|..++..+ +++++|..+++++.
T Consensus 63 A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~ 135 (987)
T PRK09782 63 AIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELL 135 (987)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHH
Confidence 566777776543 3446677888889999999999999999888864 3333333333222 88888889998888
Q ss_pred hCCCCCCHHhHHHHHHH--------HHhcCCHHHHHHHHHHhHhCCCCccHhHHHHH-HHHHhccCcHHHHHHHHHHHHH
Q 038401 82 QDRVSGDLVLYSNLIEL--------ARKLSDYSKAISIFSRLKSSGIVPDLVAYNTM-INVFGKAKLFKEARLLIEEMRE 152 (542)
Q Consensus 82 ~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~ 152 (542)
...+. +..++..+... |.+. ++|.+.++ .......|.+.+.... ...|...+++++|++++.++.+
T Consensus 136 ~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k 210 (987)
T PRK09782 136 AQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQ 210 (987)
T ss_pred HhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 77433 44444444444 4444 44444444 3322223344444444 7788888888888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHH-CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChh
Q 038401 153 QGVKPDTVSYSTLLNLYVE-NHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGID-PSVV 230 (542)
Q Consensus 153 ~g~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 230 (542)
.+. .+..-...|..+|.. .++ +.+..+++. .++.++..+..++..+.+.|+.++|..+++.+...-.. |...
T Consensus 211 ~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 211 QNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred cCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 753 234445555566666 355 555555442 22246666777777777777777777776664321000 1100
Q ss_pred HHH-----------------------------------------------------------------------------
Q 038401 231 SYN----------------------------------------------------------------------------- 233 (542)
Q Consensus 231 ~~~----------------------------------------------------------------------------- 233 (542)
++-
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 000
Q ss_pred ----------------HHHHHHHhcCcHHHHHHHHHHHHhc-C-C-----------------------------------
Q 038401 234 ----------------TLLRVYGEAELFGEAIHLFRLMQRK-E-I----------------------------------- 260 (542)
Q Consensus 234 ----------------~ll~~~~~~~~~~~a~~~~~~~~~~-~-~----------------------------------- 260 (542)
.+.-...+.|+.++|.++++..... + .
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 0000012334455555555444331 0 0
Q ss_pred ---------------------------CC--cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038401 261 ---------------------------EQ--NVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGK 311 (542)
Q Consensus 261 ---------------------------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 311 (542)
++ +...|..+..++.. ++.++|...+.+.... .|+......+...+..
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQ 521 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHH
Confidence 11 23334444444444 5666788877777665 4665544444555678
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHh---CCHHHHHHHH
Q 038401 312 AGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARA---GRIEEATWVF 388 (542)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~ 388 (542)
.|++++|...|+.+... +|+...+..+..++.+.|+.++|...++.....++............. |++++|...+
T Consensus 522 ~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 522 VEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999998665 445555667778889999999999999998876655555444433344 9999999999
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC
Q 038401 389 RQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCV 467 (542)
Q Consensus 389 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 467 (542)
+++++.. |+...+..+..++.+.|++++|+..+++.++. .| +...+..+..++...|+.++|+..++++++..+
T Consensus 600 ~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P- 674 (987)
T PRK09782 600 TRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP- 674 (987)
T ss_pred HHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 9999864 56888999999999999999999999999984 46 457788888899999999999999999999872
Q ss_pred CchH-HHHHHHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 468 FSDQ-VHFQMLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 468 ~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
.+. ..+.++.++...|++++|+..+++. ..+|+ ...+....+.+..+..+++.|.+-+++.-.-+
T Consensus 675 -~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~--~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 675 -DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN--QALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 222 3344999999999999999999994 55554 55778888999999999999999888765543
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.4e-21 Score=184.61 Aligned_cols=524 Identities=13% Similarity=0.130 Sum_probs=317.4
Q ss_pred hhhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038401 2 SVAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQME 81 (542)
Q Consensus 2 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 81 (542)
|.+-|..+.+.. ++|+-.+---.......|++..|..+|..++...+.--+...-.+..++.+.|+.+.|+..|.+..
T Consensus 149 A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 149 ADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHH
Confidence 556677777653 556655544455556678999999999997765433223334455577889999999999999998
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC--
Q 038401 82 QDRVSGDLVLYSNLIELARKLSD---YSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVK-- 156 (542)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-- 156 (542)
+.++ .++.++..|...-....+ +..+..++...-... +-++...+.|...|...|++..++.+...+......
T Consensus 227 qLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 227 QLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred hcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 8754 244444444443333333 455666666655543 457788888999999999999999998888765211
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 038401 157 PDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLL 236 (542)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 236 (542)
.-...|..+.++|-..|++++|...|.+..+.+...-...+..+...+.+.|+.+.+...|+.+.+.. +.+..+...|.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG 383 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 12456888899999999999999999888775422223445667888889999999999998888764 44556666666
Q ss_pred HHHHhcC----cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHH
Q 038401 237 RVYGEAE----LFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEM----QNRGIEPNAITYSTIIAI 308 (542)
Q Consensus 237 ~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~l~~~ 308 (542)
..|...+ ..+.|..++.+..... +.|...|-.+...+-....+ .++.++... ...+-.+.+...+.+...
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 6666554 4566666666666543 44666666666655443333 335554433 334444566667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhc---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHhcCCCC--------------
Q 038401 309 WGKAGKLDRAAMLFQKLRSS---GVEIDP------VLYQTMIVAYERVGLVAHAKRLLHELRQPNT-------------- 365 (542)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------- 365 (542)
....|+++.|...|...... ...++. .+--.+..++...++.+.|.+.+..+....+
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHH
Confidence 77777777777777666543 111121 1122233444445555555555555544333
Q ss_pred -----------------------CCHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHh---------
Q 038401 366 -----------------------IPRETAITILARAGRIEEATWVFRQAFDAGE-VKDISVFGCMIELFSR--------- 412 (542)
Q Consensus 366 -----------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~--------- 412 (542)
..+..+...+.+...+..|.+-|..+.+.-. .+|+.+.-+|+..|.+
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 2233333344444444444443333332211 1344555555554432
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChH
Q 038401 413 ---NKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFN 487 (542)
Q Consensus 413 ---~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~ 487 (542)
.+..+.|+++|.++++. .| |...-+.++-.+...|++.+|..+|.+..+.. ......+. ++.+|..+|+|.
T Consensus 622 ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHH
Confidence 23355666666666652 23 44555566666666677777777777666643 11222333 677777777777
Q ss_pred HHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 488 MLESLFERL-DSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 488 ~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
.|+++++.. .+.......++...|++++.+.|.+.+|.+.+..+....+
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 777777763 3333333456666777777777777777776666655443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=7.8e-23 Score=183.57 Aligned_cols=441 Identities=14% Similarity=0.131 Sum_probs=349.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhc
Q 038401 57 YSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGK 136 (542)
Q Consensus 57 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (542)
...+..-..+.|++.+|.+.-...-+.+ +.+......+-..+.+..+.+.....-....+.. +.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4556666778899999988776665543 2233344444555666667766655544444432 4457899999999999
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHH-HHHHHHhccCCHHHHHH
Q 038401 137 AKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCN-IMIDVYGQLDMAKDADR 215 (542)
Q Consensus 137 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~ 215 (542)
.|+++.|+.+++.+++.. +-....|..+..++...|+.+.|...|.+..+.+ |+..... .+.......|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999999863 2257889999999999999999999999998865 5544433 33344455788999999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 038401 216 LFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGI 295 (542)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (542)
.+.+..... +--...|+.|.-.+-.+|+...|++.|++..+.+ +.-...|-.|...|...+.++.|...+.+....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 888887653 2235678889999999999999999999998864 223567888999999999999999999888765
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC---CCCCCHHHH
Q 038401 296 EPN-AITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ---PNTIPRETA 371 (542)
Q Consensus 296 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 371 (542)
.|+ ...+..+...|...|..+.|+..|++.++.. +.=+..|+.|..++-..|++.+|.+.+.+... ......+.+
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 555 4567777778899999999999999999874 22467899999999999999999999998765 344566778
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCc
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLRE 450 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 450 (542)
...+...|.+++|..+|..+.+-. +.-....+.|...|-++|++++|+..|++.++ +.|+. ..++.++..|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 899999999999999999999852 23366789999999999999999999999998 88975 789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCchHH-HHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHH
Q 038401 451 FETADDLYSEMQEEGCVFSDQV-HFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIY 515 (542)
Q Consensus 451 ~~~A~~~~~~~~~~~~~~~~~~-~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~ 515 (542)
.+.|++.|.+++..+ |... ... |+.+|-.+|+..+|+..+++ ++.+|+.+ .+|-.++.++
T Consensus 438 v~~A~q~y~rAI~~n---Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp--dA~cNllh~l 500 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQIN---PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP--DAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHHHHhcC---cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc--hhhhHHHHHH
Confidence 999999999999977 5433 333 99999999999999999999 66677754 3554555443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=9e-22 Score=176.83 Aligned_cols=439 Identities=14% Similarity=0.117 Sum_probs=358.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 038401 22 YNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARK 101 (542)
Q Consensus 22 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (542)
...|..-..+.|++.+|.+.-+..-..+. .+....-.+-..+.+..+.+.....-....+.. +.-..+|..+...+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 44566667788999999988776655532 234444455566777777777766655555543 3367799999999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHCCChHHHHH
Q 038401 102 LSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYST-LLNLYVENHKFVEALS 180 (542)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~g~~~~a~~ 180 (542)
.|+++.|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+. .|+.....+ +...+-..|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999999874 446889999999999999999999999998875 466554433 3344455899999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 038401 181 VFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEI 260 (542)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 260 (542)
.|.+..+.. +-=...|..+...+-..|+...|+..|++..+.. +.-...|-.|...|...+.+++|...|.......
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 998888754 2235678889999999999999999999999764 2335678889999999999999999999887763
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038401 261 EQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPN-AITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQT 339 (542)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (542)
+.....+..+...|-..|..|.|+..+++..+. .|+ +..|+.+..++-..|++.+|...|...+... +......+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 345677888888899999999999999999886 555 5689999999999999999999999999874 445778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCC
Q 038401 340 MIVAYERVGLVAHAKRLLHELRQPNT---IPRETAITILARAGRIEEATWVFRQAFDAGEVKD-ISVFGCMIELFSRNKK 415 (542)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 415 (542)
|...|...|.+++|.++|.....-.+ ...+.+...|-++|++++|+..+++++.. .|+ ...|+.++..|-..|+
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998775333 45677899999999999999999999984 554 6789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH
Q 038401 416 YANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ 475 (542)
Q Consensus 416 ~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 475 (542)
.+.|++.+.+++. +.|.- ...+.|...|-..|...+|++-|+.+++..+..|+.....
T Consensus 438 v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred HHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 9999999999998 66764 7888999999999999999999999999886556554433
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.6e-20 Score=173.91 Aligned_cols=454 Identities=11% Similarity=0.090 Sum_probs=314.1
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 038401 37 LAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVS--GDLVLYSNLIELARKLSDYSKAISIFSR 114 (542)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 114 (542)
.+...+...-.... -++...+.|...+...|++..++.+...+...... .-...|-.+.++|...|++++|..+|.+
T Consensus 254 ~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34444444333322 25666677777777778888888888777765311 1223466677888888888888888877
Q ss_pred hHhCCCCccH--hHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC----ChHHHHHHHHHHHhc
Q 038401 115 LKSSGIVPDL--VAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENH----KFVEALSVFAEMNEV 188 (542)
Q Consensus 115 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~ 188 (542)
..+. .++. ..+..|.+.+.+.|+++.+...|+.+.... +.+..+...|...|...+ ..+.|..++.+..+.
T Consensus 333 s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 333 SLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 7765 3333 334456777888888888888888877652 335566666666666664 456666777666665
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH----HCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCC
Q 038401 189 NCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMR----KMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRK---EIE 261 (542)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~ 261 (542)
. +.|...|..+...+-....+.. +..|..+. ..+..+.+...|.+...+...|+++.|...|...... ...
T Consensus 410 ~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 410 T-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred c-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 3 5577777777777766555444 65555443 4455567778888888888888888888888877654 112
Q ss_pred CcH------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038401 262 QNV------VTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAI-TYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDP 334 (542)
Q Consensus 262 ~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (542)
++. .+-..+...+-..++.+.|.+.+..+... .|+-. .|..+.......+...+|...+......+ ..++
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np 564 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNP 564 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCc
Confidence 222 23334555556667888888888888766 44433 34444433334577788888888887654 4466
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHH------------hCCHHHHHHHHHHHHHcCCC
Q 038401 335 VLYQTMIVAYERVGLVAHAKRLLHELRQ-----PNTIPRETAITILAR------------AGRIEEATWVFRQAFDAGEV 397 (542)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~ 397 (542)
..+..+...+.+...+..|.+-|..+.+ +++.....+...+.+ .+..+.|+++|.++++.. +
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-p 643 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-P 643 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-c
Confidence 6777777788888888888876665543 233333344454432 356789999999999874 4
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-H
Q 038401 398 KDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-M 476 (542)
Q Consensus 398 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l 476 (542)
.|...-|.++-+++..|++.+|..+|.+..+... .+..+|..++.+|..+|++..|++.|+...+......+..... |
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 6888888899999999999999999999998542 3557888999999999999999999999998875545555555 9
Q ss_pred HHHHhccCChHHHHHHHHH-HhcCCC
Q 038401 477 LSLYGARKDFNMLESLFER-LDSDSN 501 (542)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~-~~~~~~ 501 (542)
+.++.++|.+.+|.+.+.. +...|.
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 9999999999999998888 444444
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=6.2e-20 Score=182.17 Aligned_cols=423 Identities=13% Similarity=0.045 Sum_probs=182.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Q 038401 93 SNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVEN 172 (542)
Q Consensus 93 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 172 (542)
......+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|...++...+.. +.+...+..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 34455666667777777777776654 4556666666667777777777777777766642 22455666666777777
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHH
Q 038401 173 HKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLF 252 (542)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 252 (542)
|++++|+..|......+. .+......++..... ..+........+.. +++...+..+.. +...........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 777777666655543321 111111111111111 11111111111111 111111111111 11100000000000
Q ss_pred HHHHhcCCCCc-HHHHHHHHHH---HHccCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038401 253 RLMQRKEIEQN-VVTYNTMIKI---YGKSLEHEKATNLMQEMQNRG-IEP-NAITYSTIIAIWGKAGKLDRAAMLFQKLR 326 (542)
Q Consensus 253 ~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (542)
...... .+. ...+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..++...
T Consensus 281 ~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000000 000 0000000000 011234455555555544432 112 22334444444445555555555555554
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCC---CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHH
Q 038401 327 SSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPN---TIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVF 403 (542)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 403 (542)
+.. +.....|..+...+...|++++|...++.+...+ +..+..+..++...|++++|+..|+++++.. +.+...+
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 432 1123344444445555555555555555443321 2223333444455555555555555555542 2234444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH-----HHHH-H
Q 038401 404 GCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ-----VHFQ-M 476 (542)
Q Consensus 404 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~-l 476 (542)
..++.++.+.|++++|+..|++.++. .| +...+..++..+...|++++|+..|+++++.....+.. ..+. .
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 44555555555555555555555542 23 23444555555555555555555555555443110000 0000 1
Q ss_pred HHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 477 LSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
+..+...|++++|.+++++ +..+|. +...+..++.++...|++++|+++|++..+
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~--~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPE--CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1122224555555555555 222222 233455555555555555555555555433
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=3.2e-19 Score=177.10 Aligned_cols=428 Identities=13% Similarity=0.053 Sum_probs=291.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 038401 21 AYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELAR 100 (542)
Q Consensus 21 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (542)
.+......+.+.|++++|+..|+..++. .|++..|..+..+|.+.|++++|++.++..++..+ .+...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3556677888899999999999998875 56778899999999999999999999999988743 35678888999999
Q ss_pred hcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHH
Q 038401 101 KLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALS 180 (542)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 180 (542)
..|++++|...|..+...+...+. ....++..+.. ..+........+.. +++...+..+.. |...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 999999999888776654311121 11122211111 12222222222221 112222222222 222212222221
Q ss_pred HHHHHHhcCCCCC-hhhHHHHHHH---HhccCCHHHHHHHHHHHHHCC-C-CCChhHHHHHHHHHHhcCcHHHHHHHHHH
Q 038401 181 VFAEMNEVNCPLD-LTTCNIMIDV---YGQLDMAKDADRLFWSMRKMG-I-DPSVVSYNTLLRVYGEAELFGEAIHLFRL 254 (542)
Q Consensus 181 ~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 254 (542)
-+....+. .+. ...+..+... ....+.+++|...|+.....+ . +.....+..+...+...|++++|+..++.
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12211111 111 1111111111 123467889999999888764 1 23445677777888889999999999998
Q ss_pred HHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038401 255 MQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDP 334 (542)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (542)
..... +.....|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...|++.++.. +.+.
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 88763 2345678888888889999999999999887763 3356788888888889999999999999988874 3456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHH------HHHH
Q 038401 335 VLYQTMIVAYERVGLVAHAKRLLHELRQP---NTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDIS------VFGC 405 (542)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ 405 (542)
..+..+..++.+.|++++|+..+++.... ++..+..+..++...|++++|++.|+++++.....+.. .++.
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 77777888888999999999999887653 33445667788889999999999999998764322111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 406 MIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.+..+...|++++|.+++++.+.. .|+. ..+..++..+.+.|++++|+++|+++.+..
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 223344569999999999998874 4544 568888999999999999999999998865
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.9e-21 Score=182.40 Aligned_cols=303 Identities=16% Similarity=0.118 Sum_probs=192.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhc
Q 038401 26 LRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGD---LVLYSNLIELARKL 102 (542)
Q Consensus 26 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 102 (542)
...+...|++++|...|+.+.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3345566777777777777777642 2455677777777777777777777777766432211 23456667777777
Q ss_pred CCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCChHHH
Q 038401 103 SDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPD----TVSYSTLLNLYVENHKFVEA 178 (542)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~a 178 (542)
|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 77777777777776542 34566677777777777777777777777766543221 12344556666677777777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 038401 179 LSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRK 258 (542)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 258 (542)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777776643 33455566666777777777777777777765432222345666667777777777777777776665
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHH
Q 038401 259 EIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGK---AGKLDRAAMLFQKLRSSGVEIDPV 335 (542)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 335 (542)
. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+.++.|++.
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 44445566667777777777777777766655 5666666666655543 346667777777776655554443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1.1e-18 Score=176.23 Aligned_cols=400 Identities=9% Similarity=0.030 Sum_probs=206.5
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHH
Q 038401 53 DRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMIN 132 (542)
Q Consensus 53 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 132 (542)
++....-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..+|++..+.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44445555555666777777777776665522 3344456666667777777777777777766542 334555566666
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHH
Q 038401 133 VFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKD 212 (542)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (542)
.+...|++++|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. |.+...+..+...+...+..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 6667777777777777766652 22344 6666666667777777777777766653 2344444555556666666666
Q ss_pred HHHHHHHHHHCCCCCCh------hHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCH---HHH
Q 038401 213 ADRLFWSMRKMGIDPSV------VSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEH---EKA 283 (542)
Q Consensus 213 a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a 283 (542)
|...++.... .|+. .....++......+. ...+++ ++|
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ad~A 215 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAIADRA 215 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHHHHHH
Confidence 6666655442 2221 000111111110000 011112 344
Q ss_pred HHHHHHHHHc-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 038401 284 TNLMQEMQNR-GIEPNAI-TYS----TIIAIWGKAGKLDRAAMLFQKLRSSGVE-IDPVLYQTMIVAYERVGLVAHAKRL 356 (542)
Q Consensus 284 ~~~~~~~~~~-~~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (542)
+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHH
Confidence 4444444432 1111110 000 0012223445555555555555544311 111 111123445555555555555
Q ss_pred HHHhcCCCCCC-------HHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----------CcC---HHHHHHHHHHHHhcCC
Q 038401 357 LHELRQPNTIP-------RETAITILARAGRIEEATWVFRQAFDAGE-----------VKD---ISVFGCMIELFSRNKK 415 (542)
Q Consensus 357 ~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~ 415 (542)
|+++...++.. ...++.++...|++++|.+.++.+.+..+ .|+ ...+..++..+...|+
T Consensus 295 l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 295 LTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 55543322111 12223344555555555555555554321 112 1234455556666777
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH-HHHH-HHHHHhccCChHHHHHH
Q 038401 416 YANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ-VHFQ-MLSLYGARKDFNMLESL 492 (542)
Q Consensus 416 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~-l~~~~~~~g~~~~A~~~ 492 (542)
+++|+++++++... .| +...+..++..+...|++++|++.++++++.. |+. .... .+.++...|++++|...
T Consensus 375 ~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~---Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 375 LPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE---PRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 77777777777653 23 44566666667777777777777777777665 322 2222 55566667777777777
Q ss_pred HHHH
Q 038401 493 FERL 496 (542)
Q Consensus 493 ~~~~ 496 (542)
++++
T Consensus 450 ~~~l 453 (765)
T PRK10049 450 TDDV 453 (765)
T ss_pred HHHH
Confidence 7774
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.8e-20 Score=176.93 Aligned_cols=298 Identities=13% Similarity=0.138 Sum_probs=172.2
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHccCCH
Q 038401 204 YGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQN---VVTYNTMIKIYGKSLEH 280 (542)
Q Consensus 204 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 280 (542)
+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+......++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555442 22333445555555555555555555555544321111 12344444555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 038401 281 EKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHEL 360 (542)
Q Consensus 281 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (542)
++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+......
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---------------------- 180 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIA---------------------- 180 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHH----------------------
Confidence 55555555554431 2233444445555555555555555555544432111100000
Q ss_pred cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHH
Q 038401 361 RQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD--SHII 438 (542)
Q Consensus 361 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~ 438 (542)
..+..+...+...|++++|...|+++.+.. +.+...+..++..+.+.|++++|.++++++.+.+ |+ ..++
T Consensus 181 -----~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~ 252 (389)
T PRK11788 181 -----HFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEYLSEVL 252 (389)
T ss_pred -----HHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhhHHHHH
Confidence 001223445566777777777777777653 3446677778888888888888888888888643 43 3566
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHH
Q 038401 439 ALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIYE 516 (542)
Q Consensus 439 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 516 (542)
..++.+|...|++++|...++++.+.. |+..... ++.++.+.|++++|..+++++ ...|+ ...+..+...+.
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~---~~~~~~l~~~~~ 326 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEY---PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS---LRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC---HHHHHHHHHHhh
Confidence 777888888888888888888888765 3322224 778888888888888888874 33333 234444555544
Q ss_pred h---hcchhhHHHHHHHHHhcCCCCC
Q 038401 517 R---ANRLNDASRIMNRMNKRRTFNS 539 (542)
Q Consensus 517 ~---~g~~~~A~~~~~~~~~~~~~~~ 539 (542)
. .|+.++|+.++++|.++++.|+
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCC
Confidence 3 4588888888888888777665
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=6.2e-19 Score=178.16 Aligned_cols=428 Identities=11% Similarity=0.030 Sum_probs=274.6
Q ss_pred hhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038401 3 VAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQ 82 (542)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 82 (542)
++.++. .... +.+..-..-.+......|+.++|++++....... +.+...+..+...+...|++++|.+++++..+
T Consensus 2 ~~~~~~-~~~~--~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 2 LSWLRQ-ALKS--ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred chhhhh-hhcc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444 3333 4455555566777889999999999999998732 34566799999999999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHH
Q 038401 83 DRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSY 162 (542)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 162 (542)
.. +.+...+..+..++...|++++|...++++.+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+
T Consensus 78 ~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~ 153 (765)
T PRK10049 78 LE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYP 153 (765)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 74 3356777888899999999999999999998873 44566 8888899999999999999999999874 2356666
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHh-----ccCCH---HHHHHHHHHHHHC-CCCC
Q 038401 163 STLLNLYVENHKFVEALSVFAEMNEVNCPLDL------TTCNIMIDVYG-----QLDMA---KDADRLFWSMRKM-GIDP 227 (542)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~ 227 (542)
..+..++...|..+.|++.++.... .|+. ......+.... ..+++ ++|...++.+.+. ...|
T Consensus 154 ~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 154 TEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred HHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 7788888899999999999987654 1221 01111111111 11122 4455555555532 1112
Q ss_pred Chh-HHH----HHHHHHHhcCcHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---C
Q 038401 228 SVV-SYN----TLLRVYGEAELFGEAIHLFRLMQRKEIE-QNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEP---N 298 (542)
Q Consensus 228 ~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~ 298 (542)
+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+++....... .
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 111 110 0022233445555566655555554321 111 11113445555555555555555554331000 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCC---CHHHHHHHH
Q 038401 299 AITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTI---PRETAITIL 375 (542)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~ 375 (542)
......+..++...|++++|...++.+.+.. ++....+... . ..|+.. ........+
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~~------~-------------~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYGSP------T-------------SIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecCCC------C-------------CCCCchHHHHHHHHHHHH
Confidence 1223334444455555555555555555432 1111000000 0 000100 112345667
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 038401 376 ARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD-SHIIALVLNSYGKLREFETA 454 (542)
Q Consensus 376 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 454 (542)
...|++++|++.++++.... +.+...+..++..+...|++++|++.++++++ ..|+ ...+...+..+...|++++|
T Consensus 370 ~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHH
Confidence 78899999999999988763 45688899999999999999999999999998 4575 46666777788899999999
Q ss_pred HHHHHHHHHcC
Q 038401 455 DDLYSEMQEEG 465 (542)
Q Consensus 455 ~~~~~~~~~~~ 465 (542)
...++++++..
T Consensus 447 ~~~~~~ll~~~ 457 (765)
T PRK10049 447 DVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhC
Confidence 99999999976
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2e-19 Score=177.77 Aligned_cols=332 Identities=11% Similarity=-0.023 Sum_probs=237.4
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038401 125 VAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVY 204 (542)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 204 (542)
.-...++..+.+.|++++|..+++........ +...+..++.+....|++++|...++++.... |.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34455667778889999999998888876432 45556666677778899999999999988864 44667788888888
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHH
Q 038401 205 GQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKAT 284 (542)
Q Consensus 205 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 284 (542)
...|++++|...++++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 88899999999998888763 445667788888888899999999888887765432 33333333 3477788999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHh
Q 038401 285 NLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAH----AKRLLHEL 360 (542)
Q Consensus 285 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~ 360 (542)
..++.+......++...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++ |...+++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 888888766433344455555677788889999999998888764 4467777778888888888875 67777776
Q ss_pred cCCCCC---CHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H
Q 038401 361 RQPNTI---PRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-H 436 (542)
Q Consensus 361 ~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~ 436 (542)
...++. .+..+...+...|++++|...++++++.. +.+...+..+..++...|++++|+..|+++... .|+. .
T Consensus 277 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~ 353 (656)
T PRK15174 277 LQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSK 353 (656)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchH
Confidence 553333 34455666777777777777777777653 344556666777777777777777777777763 3543 2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 437 IIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.+..+..++...|+.++|...|+++.+..
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23334556677777777777777777765
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=4.2e-19 Score=175.45 Aligned_cols=327 Identities=11% Similarity=0.008 Sum_probs=150.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 038401 26 LRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDY 105 (542)
Q Consensus 26 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 105 (542)
+..+.+.|++++|..+++........ +...+..++.+....|++++|+..++++.+..+ .+...+..+...+...|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCH
Confidence 34444555555555555555544322 233334444444445555555555555554422 1344444455555555555
Q ss_pred HHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 038401 106 SKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEM 185 (542)
Q Consensus 106 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 185 (542)
++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 55555555555432 223444445555555555555555555544433211 11222222 2244455555555555554
Q ss_pred HhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHH----HHHHHHHHHhcCCC
Q 038401 186 NEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGE----AIHLFRLMQRKEIE 261 (542)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~ 261 (542)
.+....++......+...+...|++++|...++.+.... +.+...+..+...+...|++++ |...++...... +
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P 281 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S 281 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C
Confidence 443222222233333444455555555555555555443 2334444445555555555543 455555554432 2
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038401 262 QNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMI 341 (542)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (542)
.+...+..+...+.+.|++++|...+++..... +.+...+..+..++...|++++|...++.+...+. .+...+..+.
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~~~~~a 359 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKWNRYAA 359 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHHHHHHH
Confidence 234445555555555555555555555554432 11233344444455555555555555555544321 1112222233
Q ss_pred HHHHHcCCHHHHHHHHHHhc
Q 038401 342 VAYERVGLVAHAKRLLHELR 361 (542)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~ 361 (542)
.++...|+.++|...|++..
T Consensus 360 ~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 44445555555555555543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=3.4e-17 Score=162.27 Aligned_cols=429 Identities=11% Similarity=0.058 Sum_probs=255.6
Q ss_pred HHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 038401 27 RNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYS 106 (542)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (542)
-...+.|+++.|+..|+...+..+.-.+..+ .++..+...|+.++|+..+++.... ..........+...+...|+++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 3456788888888888888876432112233 7777777788888888888888721 1222333344456777888888
Q ss_pred HHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 038401 107 KAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMN 186 (542)
Q Consensus 107 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (542)
+|+++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8888888888764 334666677778888888888888888888775 4555555444444444566656888888888
Q ss_pred hcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHH------HHHHHHH---H--hcC---cHHHHHHHH
Q 038401 187 EVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSY------NTLLRVY---G--EAE---LFGEAIHLF 252 (542)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~ll~~~---~--~~~---~~~~a~~~~ 252 (542)
+.. |.+...+..+..+..+.|-...|.++...-... +.+....+ ..+++.- . ... -.+.|+.-+
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 865 446777777778888888877777665542211 01111000 0001000 0 011 233444444
Q ss_pred HHHHhc-CCCCc-HHH----HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038401 253 RLMQRK-EIEQN-VVT----YNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLR 326 (542)
Q Consensus 253 ~~~~~~-~~~~~-~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (542)
+.+... +..|. ... ..-.+-++...+++.++++.++.+...+.+....+-..+..+|...+.+++|..+|+.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 444442 11121 111 122344556667777777777777766654445566667777777777777777777765
Q ss_pred hcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCC-----------C---H----HHHHHHHHHhCCHHH
Q 038401 327 SSG-----VEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTI-----------P---R----ETAITILARAGRIEE 383 (542)
Q Consensus 327 ~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~---~----~~l~~~~~~~g~~~~ 383 (542)
... .+++......|.-++...+++++|..+++.+....+. + | ...+..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 532 1223333456666677777777777777776542220 0 1 112444555666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038401 384 ATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD-SHIIALVLNSYGKLREFETADDLYSEMQ 462 (542)
Q Consensus 384 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 462 (542)
|.+.++.+.... |-|......+.+.+...|++.+|++.++.+.. ..|+ ..+....+.++...|++++|..+.+.+.
T Consensus 435 Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 435 AQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666666665542 34566666666666666666666666655554 2343 3444455556666666666666666666
Q ss_pred HcC
Q 038401 463 EEG 465 (542)
Q Consensus 463 ~~~ 465 (542)
+..
T Consensus 512 ~~~ 514 (822)
T PRK14574 512 SRS 514 (822)
T ss_pred hhC
Confidence 654
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=6.7e-17 Score=160.17 Aligned_cols=424 Identities=11% Similarity=0.082 Sum_probs=306.8
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHH
Q 038401 63 CFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKE 142 (542)
Q Consensus 63 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 142 (542)
...+.|+++.|+..|++..+..+.-....+ .++..+...|+.++|+..+++.... .+........+...+...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 457899999999999999987533212344 8888888999999999999999821 12233334444668888899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038401 143 ARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRK 222 (542)
Q Consensus 143 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 222 (542)
|.++|+++.+... -+...+..++..+...++.++|++.++++.... |+...+..++..+...++..+|...++++.+
T Consensus 121 Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999998742 356777788889999999999999999998764 5555565555555556677679999999998
Q ss_pred CCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHH------HHHHHHH-H----ccCC---HHHHHHHHH
Q 038401 223 MGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTY------NTMIKIY-G----KSLE---HEKATNLMQ 288 (542)
Q Consensus 223 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~-~----~~~~---~~~a~~~~~ 288 (542)
.. +.+...+..+..++.+.|-...|+++...-... +.+....+ ..+++.- . ...+ .+.|+.-++
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 85 556777888889999999998888776653321 11111111 1111110 0 1122 244555555
Q ss_pred HHHHc-CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q 038401 289 EMQNR-GIEPN-AITY----STIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ 362 (542)
Q Consensus 289 ~~~~~-~~~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (542)
.+... +-.|. ...| .-.+.++...|+..++++.|+.+...+.+....+-..+.++|...+.+++|..+++.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 55542 11232 2222 233456778899999999999999888776777888999999999999999999999865
Q ss_pred CCC------CC---HHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----------CcC---HHHHHHHHHHHHhcCCHHHH
Q 038401 363 PNT------IP---RETAITILARAGRIEEATWVFRQAFDAGE-----------VKD---ISVFGCMIELFSRNKKYANV 419 (542)
Q Consensus 363 ~~~------~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A 419 (542)
..+ .. ...+..++...+++++|..+++.+.+..+ .|+ ......++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 321 11 24568888999999999999999987422 122 22344566778889999999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHH-HH-HHHHHHhccCChHHHHHHHHHH
Q 038401 420 IEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQV-HF-QMLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 420 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~-~l~~~~~~~g~~~~A~~~~~~~ 496 (542)
++.++++... .| |......+...+...|.+.+|++.++.+.... |+.. .. ..+.++...|++++|..+++++
T Consensus 436 e~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~---P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 436 QKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLA---PRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC---CccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999874 35 77888889999999999999999998887765 4433 22 3788888899999999999885
Q ss_pred hc
Q 038401 497 DS 498 (542)
Q Consensus 497 ~~ 498 (542)
..
T Consensus 511 ~~ 512 (822)
T PRK14574 511 IS 512 (822)
T ss_pred Hh
Confidence 43
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=4.7e-15 Score=134.97 Aligned_cols=496 Identities=11% Similarity=0.060 Sum_probs=376.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 038401 15 YSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSN 94 (542)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 94 (542)
++.++..|-..+ ...+.++|..++.+..+. ++.+...|. ++++..-++.|..++....+. ++.+...|.+
T Consensus 376 iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWit 445 (913)
T KOG0495|consen 376 IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWIT 445 (913)
T ss_pred CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHH
Confidence 455666665544 335666688888877775 333444444 445566788888888888765 6668888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHh----HhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 038401 95 LIELARKLSDYSKAISIFSRL----KSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKP--DTVSYSTLLNL 168 (542)
Q Consensus 95 l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~ 168 (542)
....--..|+.+...+++++- ...|+..+...|-.=...|-+.|..-.+..+....+.-|+.- ...||..-...
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 888888888888888887654 345777788888777778888888888888888888777643 34678888888
Q ss_pred HHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHH
Q 038401 169 YVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEA 248 (542)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 248 (542)
|.+.+.++-|..+|....+. .+-+...|...+..--..|..++...+|+++...- +.....|......+-..|+...|
T Consensus 526 ~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHH
Confidence 88999999999999888875 35567778877777778888999999999988763 44455666667777788999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038401 249 IHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSS 328 (542)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (542)
..++....+.. +.+...|..-+..-....+++.|..+|.+.... .|+...|..-+...-..++.++|++++++.++.
T Consensus 604 r~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999888775 347788888889999999999999999888765 677788877777777788999999999988876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC--CC-CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 038401 329 GVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ--PN-TIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGC 405 (542)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 405 (542)
++.-...|..+.+.+.+.++.+.|...|..-.+ |+ +..|-.+...--+.|.+..|..++++..-.+ +.+...|-.
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 343467788888889999999999998887665 33 3346666777778889999999999988764 367888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCC
Q 038401 406 MIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKD 485 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 485 (542)
.+.+-.+.|+.+.|..+..++++. ++.+...|..-|...-+.++-..+...+++... ...+...++..+....+
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~-----dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH-----DPHVLLAIAKLFWSEKK 832 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccC-----CchhHHHHHHHHHHHHH
Confidence 999999999999999999888874 333446777777777777775555555555432 23344447788888899
Q ss_pred hHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 486 FNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 486 ~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
+++|.++|++ +..+|+ ....|..+...+.+.|.-++-.+++++.....
T Consensus 833 ~~kar~Wf~Ravk~d~d--~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPD--NGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHccCCc--cchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 9999999999 455555 44677777788889998888888888765543
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=4.3e-15 Score=135.22 Aligned_cols=462 Identities=12% Similarity=0.086 Sum_probs=380.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHH----HHhCCCCCCHH
Q 038401 15 YSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQ----MEQDRVSGDLV 90 (542)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~ 90 (542)
++.++..|. ++++...|+.|..+++...+. ++.+..+|.+....--.+|+.+...+++.+ +...|+..+..
T Consensus 406 cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 406 CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 344444444 466778899999999999886 677899999988888889999998887765 45568888999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCc--cHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038401 91 LYSNLIELARKLSDYSKAISIFSRLKSSGIVP--DLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNL 168 (542)
Q Consensus 91 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 168 (542)
.|..=...|-..|..-.+..+....+.-|+.- -..+|..-...|.+.+.++-|..+|....+- .+.+...|......
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ 559 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMF 559 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHH
Confidence 99998999999999999999999988777553 3568888889999999999999999998875 34467778877777
Q ss_pred HHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHH
Q 038401 169 YVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEA 248 (542)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 248 (542)
--..|..++...+|++.... +|.....|......+-..|+...|..++....+.. +.+...|-.-+.....+.+++.|
T Consensus 560 ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 560 EKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHH
Confidence 77789999999999999886 56677788888888889999999999999999875 44777888889999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 249 IHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNA-ITYSTIIAIWGKAGKLDRAAMLFQKLRS 327 (542)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (542)
..+|.+.... .|+...|.--+..---.++.++|.+++++.++. .|+. ..|..+.+.+-+.++.+.|.+.|..-.+
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 9999988875 567777777777777789999999999998876 5554 4677778888899999999999887766
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 038401 328 SGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQP---NTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFG 404 (542)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 404 (542)
. ++-.+..|..+...-.+.|.+-+|..+++...-. +...|-..+.+-.+.|+.+.|..+..++++. .+.+...|.
T Consensus 714 ~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWa 791 (913)
T KOG0495|consen 714 K-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWA 791 (913)
T ss_pred c-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHH
Confidence 5 4567788888888888999999999999987643 4556778899999999999999999999987 567778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhcc
Q 038401 405 CMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGAR 483 (542)
Q Consensus 405 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~ 483 (542)
.-|....+.++--..+..+++. .-|.+.+..+...+....+++.|+++|.++++.+ +.....+. +...+.+.
T Consensus 792 EaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~h 864 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRH 864 (913)
T ss_pred HHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHh
Confidence 8888777777755555544433 3577888889999999999999999999999987 44555666 77888899
Q ss_pred CChHHHHHHHHHHh
Q 038401 484 KDFNMLESLFERLD 497 (542)
Q Consensus 484 g~~~~A~~~~~~~~ 497 (542)
|.-+.-.+++.+..
T Consensus 865 G~eed~kev~~~c~ 878 (913)
T KOG0495|consen 865 GTEEDQKEVLKKCE 878 (913)
T ss_pred CCHHHHHHHHHHHh
Confidence 98888888888854
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=3.1e-17 Score=142.61 Aligned_cols=451 Identities=14% Similarity=0.153 Sum_probs=309.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHhHhCCCCcc------HhHHH
Q 038401 56 TYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLY-SNLIELARKLSDYSKAISIFSRLKSSGIVPD------LVAYN 128 (542)
Q Consensus 56 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 128 (542)
+...|..-|..+....+|+..|+-+.+...-|+.... ..+...+.+..++.+|+++++..... .|+ ....+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~ 280 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHh
Confidence 3444555666778889999999998887766765543 34556778889999999999988765 332 23445
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCC------------hhh
Q 038401 129 TMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLD------------LTT 196 (542)
Q Consensus 129 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------------~~~ 196 (542)
.+...+.+.|.++.|..-|+...+. .|+..+-..|+-++..-|+-++..+.|.+|......+| ...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 5556688999999999999998876 58887777777788889999999999999976433322 222
Q ss_pred HHHH-----HHHHhccCCHHHHHHHHH---HHHHCCCCCChhH-------------HH--------HHHHHHHhcCcHHH
Q 038401 197 CNIM-----IDVYGQLDMAKDADRLFW---SMRKMGIDPSVVS-------------YN--------TLLRVYGEAELFGE 247 (542)
Q Consensus 197 ~~~l-----~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~-------------~~--------~ll~~~~~~~~~~~ 247 (542)
.+.. +.-+-+.+. ..|++..- .+..--+.|+-.. +. .-...+.+.|+++.
T Consensus 359 l~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 2222 222222211 11222211 1111112222110 00 01123678899999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHH-HH-ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038401 248 AIHLFRLMQRKEIEQNVVTYNTMIKI-YG-KSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKL 325 (542)
Q Consensus 248 a~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 325 (542)
|++++.-+.+..-..-...-+.|-.. |. -..++-.|..+-+...... .-+......-.......|++++|.+.|++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 99999888776433223333333222 22 2446667777666655432 223322222223334679999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHH
Q 038401 326 RSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELR---QPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISV 402 (542)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 402 (542)
+..+-......|+ +.-.+...|+.++|+..|-++. ..+......+...|....+...|++++.++... ++.|+.+
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 8764333333333 2334778999999999998764 356666777788899999999999999998775 6678999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH--HHHH
Q 038401 403 FGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ--MLSL 479 (542)
Q Consensus 403 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~ 479 (542)
+.-|.+.|-+.|+-..|.+.+-.--+ ..| +..+...+..-|....-+++|+.+|+++.-. .|+..-|. ++.+
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaali---qp~~~kwqlmiasc 669 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI---QPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc---CccHHHHHHHHHHH
Confidence 99999999999999999988765544 445 6788888888889999999999999998764 47777666 6688
Q ss_pred HhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcc
Q 038401 480 YGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANR 520 (542)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 520 (542)
+.+.|++++|.++++.+..... .+.+..-.|++++...|.
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfp-edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFP-EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCc-cchHHHHHHHHHhccccc
Confidence 8899999999999999754432 245677788888888885
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=7e-15 Score=127.21 Aligned_cols=322 Identities=15% Similarity=0.149 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH--HhccCCHHH-HHHHHHHHHhCCCCCCHHhHHHH
Q 038401 19 VFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITC--FGKEGMFDS-AISWLQQMEQDRVSGDLVLYSNL 95 (542)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l 95 (542)
+.+=|.|+.. ...|...++.-+++.|.+.|++.+...-..+++. |....++.- -++.|-.|...|-. +..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 4455666654 5668899999999999999988887776666553 223333222 23444445444311 22222
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCh
Q 038401 96 IELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKF 175 (542)
Q Consensus 96 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 175 (542)
+.|++.+ ++-+.. +.+..++..||.++++-...+.|.+++++......+.+..+||.+|.+-.-..+
T Consensus 191 -----K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~- 257 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG- 257 (625)
T ss_pred -----ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-
Confidence 2222221 211111 334555555555555555555555555555555445555555555544332211
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHH----HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHH-HHHH
Q 038401 176 VEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKD----ADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFG-EAIH 250 (542)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~ 250 (542)
.+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++.. .+..
T Consensus 258 ---K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 258 ---KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred ---HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 4555555555555566666666655555554433 3344555555555555555555555555554432 2333
Q ss_pred HHHHHHh----cCCC----CcHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHhcCCH
Q 038401 251 LFRLMQR----KEIE----QNVVTYNTMIKIYGKSLEHEKATNLMQEMQNR----GIEPN---AITYSTIIAIWGKAGKL 315 (542)
Q Consensus 251 ~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~---~~~~~~l~~~~~~~~~~ 315 (542)
++.++.. +.++ .+...|...+..|.+..+.+.|.++..-+... -+.|+ ..-|..+..+.+.....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222 1111 12333444455555555555555544333221 01222 12344455555555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 038401 316 DRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELR 361 (542)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (542)
+.....|+.|+-.-+-|+..+...++++..-.+.++-.-+++.++.
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~ 460 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK 460 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH
Confidence 5555555555555455555555555555555555555555555443
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=2.8e-14 Score=135.04 Aligned_cols=345 Identities=14% Similarity=0.145 Sum_probs=258.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 038401 15 YSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSN 94 (542)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 94 (542)
++|.+...-.....+.-.|+.++|..++.+.++..+. +...|..|...|-..|+.+++...+-..-... +.|...|..
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ 212 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKR 212 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 3444454555555566669999999999999998644 78899999999999999999998876665554 347789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHH
Q 038401 95 LIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSY----STLLNLYV 170 (542)
Q Consensus 95 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~~~ 170 (542)
+.....+.|++++|.-+|.+.++.. +++...+---+..|-+.|+...|..-|.++.....+.|..-+ ...+..+.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 555555556677888999999999999999887432232222 23456677
Q ss_pred HCCChHHHHHHHHHHHhc-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-------------------------
Q 038401 171 ENHKFVEALSVFAEMNEV-NCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMG------------------------- 224 (542)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------- 224 (542)
..++.+.|.+.+...... +-..+...+++++..+.+...++.+......+....
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 778888899888887662 223456678888888999889998888777766511
Q ss_pred --CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 038401 225 --IDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKE--IEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAI 300 (542)
Q Consensus 225 --~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 300 (542)
..++..+ -.++-++...+..+....+........ +.-+...|.-+..+|...|++.+|+.+|..+......-+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 1222222 122233444444455555555555554 33456778889999999999999999999998875455677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCC
Q 038401 301 TYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPN 364 (542)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 364 (542)
.|-.+..+|...|..+.|.+.|+..+... +.+...-..|...+.+.|+.++|.+.++.+..++
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 89999999999999999999999998874 3455666677788899999999999999987655
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.1e-13 Score=121.59 Aligned_cols=467 Identities=12% Similarity=0.064 Sum_probs=337.5
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 038401 17 PSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLI 96 (542)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 96 (542)
-++..|-...+--..++++..|..+|++.+..... +...|...+.+-.++..++.|..++++....=+. -...|--.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHH
Confidence 34445555555555677888899999999887643 7778888999989999999999999998775322 223555556
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChH
Q 038401 97 ELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFV 176 (542)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 176 (542)
..--..|++..|.++|++-.+- .|+...|.+.|..-.+-+..+.|..+++...-- .|++.+|......=.+.|+..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 6666789999999999988864 899999999999999999999999999998874 689999999888888999999
Q ss_pred HHHHHHHHHHhc-C-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCcHHHHHH--
Q 038401 177 EALSVFAEMNEV-N-CPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPS--VVSYNTLLRVYGEAELFGEAIH-- 250 (542)
Q Consensus 177 ~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~-- 250 (542)
.+..+|....+. | -..+...+.+....-.++..++.|.-+|+-.++.- +.+ ...|..+...--+.|+......
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 999999887653 1 11233445555555566778888999998888762 222 3344444444445565443333
Q ss_pred ------HHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH--------HHHhcCC
Q 038401 251 ------LFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAI--TYSTIIA--------IWGKAGK 314 (542)
Q Consensus 251 ------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~--------~~~~~~~ 314 (542)
-|+.+.+.+ +.|-.+|...+..-...|+.+...+++++.... ++|-.. .|...|- .-....+
T Consensus 304 v~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred hhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 234444443 567788888888888889999999999998876 344221 2222221 1235688
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhCCHHHHHHHH
Q 038401 315 LDRAAMLFQKLRSSGVEIDPVLYQTMIVAY----ERVGLVAHAKRLLHELRQ--PNTIPRETAITILARAGRIEEATWVF 388 (542)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (542)
.+.+.++|+..++. ++....|+..+--.| .++.+...|.+++..... |....+...+..-.+.++++.+..++
T Consensus 382 ~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 382 VERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999998884 455556665554444 467889999999988764 55666777788888899999999999
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC
Q 038401 389 RQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAG-YFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCV 467 (542)
Q Consensus 389 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 467 (542)
++.++.+ +.+..+|.-....-...|+.+.|..+|+-+++.. +......|...+.--...|.++.|..+|+++++....
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 9999974 3578889888888888999999999999988742 1122355666666667889999999999999987622
Q ss_pred CchHHHHHHHHHHh-----ccC-----------ChHHHHHHHHHH
Q 038401 468 FSDQVHFQMLSLYG-----ARK-----------DFNMLESLFERL 496 (542)
Q Consensus 468 ~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~ 496 (542)
.+ ++...+..-. +.| ....|..+|++.
T Consensus 540 ~k--vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferA 582 (677)
T KOG1915|consen 540 VK--VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERA 582 (677)
T ss_pred ch--HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHH
Confidence 22 3333333222 344 566788888873
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=5.4e-14 Score=133.13 Aligned_cols=526 Identities=13% Similarity=0.068 Sum_probs=292.7
Q ss_pred ChhhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 038401 1 RSVAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQM 80 (542)
Q Consensus 1 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 80 (542)
+|.+++..+.+. .+.+...|.+|...|-..|+.+++...+-.+-..... |...|..+.....+.|+++.|.-.|.+.
T Consensus 157 eA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 157 EAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 366777777765 3667788999999999999999999887666555433 6789999999999999999999999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHH----HHHHHHHhccCcHHHHHHHHHHHHHc-CC
Q 038401 81 EQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAY----NTMINVFGKAKLFKEARLLIEEMREQ-GV 155 (542)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~-g~ 155 (542)
++..++ +....-.-+..|.+.|+...|...|.++.....+.|..-+ -..++.+...++-+.|.+.++..... +-
T Consensus 234 I~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 234 IQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 988543 5555556678899999999999999999887432222222 23456677777778888888887762 22
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcC---------------------------CCCChhhHHHHHHHHhccC
Q 038401 156 KPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVN---------------------------CPLDLTTCNIMIDVYGQLD 208 (542)
Q Consensus 156 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~ 208 (542)
..+...++.++..+.+...++.+......+.... ..++...+. +.-++....
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~ 391 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICLVHLK 391 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-Hhhhhhccc
Confidence 3355667788888888888888887776665511 111111111 111222222
Q ss_pred CHHHHHHHHHHHHHCC--CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 038401 209 MAKDADRLFWSMRKMG--IDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNL 286 (542)
Q Consensus 209 ~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 286 (542)
..+....+...+.... +.-+...|.-+..++...|.+.+|+.+|..+.......+...|-.+..+|...|..+.|...
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 2233333333333332 11223334444445555555555555555444443333344444445555555555555555
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038401 287 MQEMQNRGIEPN-AITYSTIIAIWGKAGKLDRAAMLFQKLR--------SSGVEIDPVLYQTMIVAYERVGLVAHAKRLL 357 (542)
Q Consensus 287 ~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (542)
++..... .|+ ...-..|...+.+.|+.++|.+.+..+. ..+..|+..........+.+.|+.++-....
T Consensus 472 y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 472 YEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5444433 221 2222333333444444444444444421 1122333322222223333333322211111
Q ss_pred HHhc-----------------------------------------------------------------CCCCCCH----
Q 038401 358 HELR-----------------------------------------------------------------QPNTIPR---- 368 (542)
Q Consensus 358 ~~~~-----------------------------------------------------------------~~~~~~~---- 368 (542)
..+. .-....|
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~ 629 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELF 629 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHH
Confidence 1100 0000111
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCC--cCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC--CCCH-HHHH
Q 038401 369 ETAITILARAGRIEEATWVFRQAFDAGEV--KDI---SVFGCMIELFSRNKKYANVIEVFEKMRSA-GY--FPDS-HIIA 439 (542)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~p~~-~~~~ 439 (542)
..++..+.+.+++++|+.+...+.+...- ++. ..-...+.+.+..+++..|...++.|... +. .|.. ..|+
T Consensus 630 ~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n 709 (895)
T KOG2076|consen 630 RELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWN 709 (895)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 22355566777777777777776654211 111 12223344555667777777776666543 11 1211 2222
Q ss_pred HH-----------------------------------HHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhc-
Q 038401 440 LV-----------------------------------LNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGA- 482 (542)
Q Consensus 440 ~l-----------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~- 482 (542)
.. +.-....+.+.-|++.|-++...++.. +.... ++.++.+
T Consensus 710 ~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~--Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 710 LDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS--PLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHH
Confidence 11 111223467888899888888877222 22222 3333322
Q ss_pred -c--------CChHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 483 -R--------KDFNMLESLFERLDS-DSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 483 -~--------g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
. -..-++..++.+..+ ..+....++.+.++++|-..|-..-|..+|+++++-.
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 1 124556666666322 2222345788899999999999999999999998764
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=5.4e-14 Score=123.38 Aligned_cols=449 Identities=10% Similarity=0.070 Sum_probs=341.3
Q ss_pred ChhhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 038401 1 RSVAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQM 80 (542)
Q Consensus 1 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 80 (542)
||.++|+...+. -..+...|...+..-.+++++..|..+|++....-+.. ...|-..+..--..|++..|.++|++.
T Consensus 91 RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-dqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 91 RARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-DQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-HHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 689999999864 47888899999999999999999999999999863222 235666676667789999999999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHc-CC-CCC
Q 038401 81 EQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQ-GV-KPD 158 (542)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~-~~~ 158 (542)
.+. +|+...|.+.+..-.+.+..+.|..++++..-. .|+..+|-.....--+.|....+..+|+...+. |- .-+
T Consensus 168 ~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 168 MEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 875 899999999999999999999999999998865 699999999999889999999999999998764 10 012
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHhccCCHHHHHHH--------HHHHHHCCCCCC
Q 038401 159 TVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLD--LTTCNIMIDVYGQLDMAKDADRL--------FWSMRKMGIDPS 228 (542)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~ 228 (542)
...+.+....=.++..++.|.-+|+-..+. +|.+ ...|......--+.|+.....+. ++.+.+.+ +.|
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~n 321 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCC
Confidence 233444444445577888999999888775 3333 44555555555566665544443 34444444 567
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcH--HHHHHHHH--------HHHccCCHHHHHHHHHHHHHcCCCCC
Q 038401 229 VVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNV--VTYNTMIK--------IYGKSLEHEKATNLMQEMQNRGIEPN 298 (542)
Q Consensus 229 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~~~~~~a~~~~~~~~~~~~~p~ 298 (542)
-.+|--.+......|+.+...++|+..... ++|-. ..|...|- .=....+.+.+.++++..++. ++..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 778888888888899999999999999876 34422 12222221 113568899999999998884 4556
Q ss_pred HHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCC---CCCHHHH
Q 038401 299 AITYSTIIAIW----GKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPN---TIPRETA 371 (542)
Q Consensus 299 ~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l 371 (542)
.+||..+--.| .++.++..|.+++...+.. -|...++...|..-.+.++++.+..++++...-+ ..+|...
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 66776554444 4678899999999988754 6788999999999999999999999999987644 4456666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGE-VKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYG---- 446 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 446 (542)
...-...|+.+.|..+|.-++++.. ......|.+.|+.-...|.++.|..+|+++++.. +...+|.++..--.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccc
Confidence 7777889999999999999987621 1235678888888889999999999999999843 55557766654322
Q ss_pred -ccC-----------cHHHHHHHHHHHHHc
Q 038401 447 -KLR-----------EFETADDLYSEMQEE 464 (542)
Q Consensus 447 -~~g-----------~~~~A~~~~~~~~~~ 464 (542)
+.| ....|..+|+++...
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 334 567899999987653
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.8e-14 Score=124.76 Aligned_cols=323 Identities=15% Similarity=0.228 Sum_probs=234.5
Q ss_pred HhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHH---HHHHHhHhCCCCccHhHHHHHH
Q 038401 55 YTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAI---SIFSRLKSSGIVPDLVAYNTMI 131 (542)
Q Consensus 55 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~ 131 (542)
.+=+.++.. ..+|.+..+.-+|+.|.+.|++.+...-..|++..+-.+.-+--. +.|-.|.+.| ..+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc----
Confidence 345555554 467889999999999999998888877777776544333222112 2233333333 2233343
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHH
Q 038401 132 NVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAK 211 (542)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (542)
+.|.+.+ -+++.. +-+..++.++|.+.|+--..+.|.+++++......+.+..+||.+|.+-.-..
T Consensus 191 ----K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~--- 256 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV--- 256 (625)
T ss_pred ----ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc---
Confidence 3444433 333333 33778999999999999999999999999988888899999999997754332
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHH----HHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHH-HHHH
Q 038401 212 DADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGE----AIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEK-ATNL 286 (542)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~ 286 (542)
..+++.+|....+.||..|+|+++++..+.|+++. |.+++.+|.+-|+.|...+|..+|..+.+.++..+ +..+
T Consensus 257 -~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 257 -GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred -cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 37889999999999999999999999999998765 56788899999999999999999999999888754 5566
Q ss_pred HHHHHHc----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHHcCCHH
Q 038401 287 MQEMQNR----GIEP----NAITYSTIIAIWGKAGKLDRAAMLFQKLRSSG----VEID---PVLYQTMIVAYERVGLVA 351 (542)
Q Consensus 287 ~~~~~~~----~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~ 351 (542)
+.++... .++| |...|...+..|.+..+.+.|.++...+.... +.|+ ...|..+..+.++....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665542 2333 44567778888889999999999887665321 2232 345567778888999999
Q ss_pred HHHHHHHHhcC----CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc
Q 038401 352 HAKRLLHELRQ----PNTIPRETAITILARAGRIEEATWVFRQAFDAGEVK 398 (542)
Q Consensus 352 ~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 398 (542)
....+++.+.. ++......++.+....|+++-.-+++..++..|..-
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 99999999875 444455556666667777777777777777665433
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=5.3e-15 Score=128.94 Aligned_cols=456 Identities=13% Similarity=0.087 Sum_probs=305.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHH-HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH----hHHH
Q 038401 20 FAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYS-TLITCFGKEGMFDSAISWLQQMEQDRVSGDLV----LYSN 94 (542)
Q Consensus 20 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ 94 (542)
.....|.+-|..+..+.+|+..++-+.+...-|+..... .+...+.+..++.+|+++|+-.+..-++.+.. ..+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 334455666777788889999999888876667765433 45567888999999999999887763333332 3444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC------------CCHHHH
Q 038401 95 LIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVK------------PDTVSY 162 (542)
Q Consensus 95 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~ 162 (542)
+...+.+.|.++.|+..|+...+. .|+..+--.|+-++...|+-++..+.|.+|+.-... |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 555678899999999999998876 677665555555666789999999999999864322 222222
Q ss_pred HHHH-----HHHHHCC--ChHHHHHHHHHHHhcCCCCChhh---H------------------HHHHHHHhccCCHHHHH
Q 038401 163 STLL-----NLYVENH--KFVEALSVFAEMNEVNCPLDLTT---C------------------NIMIDVYGQLDMAKDAD 214 (542)
Q Consensus 163 ~~l~-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~---~------------------~~l~~~~~~~~~~~~a~ 214 (542)
+.-+ .-.-+.+ +-++++..-.++..--+.|+-.. | ..-...+.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2222 1111111 12223222222222222222111 0 01122467899999999
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHh--cCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038401 215 RLFWSMRKMGIDPSVVSYNTLLRVYGE--AELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQN 292 (542)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (542)
++++-+.+..-+.-...-+.|...+.- ..++..|.+.-+...... .-+......-.......|++++|.+.+++.+.
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 999988865433333333333333332 345777777666555332 22333222223334467999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC---CCCCCHH
Q 038401 293 RGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ---PNTIPRE 369 (542)
Q Consensus 293 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 369 (542)
..-......|+.=+ .+-..|++++|++.|-++... +..+..+...+...|....+..+|++++.+... .++....
T Consensus 519 ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ils 596 (840)
T KOG2003|consen 519 NDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILS 596 (840)
T ss_pred CchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHH
Confidence 63222222233222 356789999999999887653 233677778888889999999999999988654 4666677
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hcc
Q 038401 370 TAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSY-GKL 448 (542)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~ 448 (542)
.+...|-+.|+-..|.+.+-....- ++.+..+...|..-|....-+++|+.+|++..- +.|+..-|..++..| .+.
T Consensus 597 kl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence 8889999999999998876555443 567889999999999999999999999999876 789999998877655 578
Q ss_pred CcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCC
Q 038401 449 REFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKD 485 (542)
Q Consensus 449 g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~ 485 (542)
|+++.|...|+...+.. |.+..+.. ++.++...|.
T Consensus 674 gnyqka~d~yk~~hrkf--pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKF--PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHHHHHHHhccccc
Confidence 99999999999999876 33444444 7777777664
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=2.1e-14 Score=134.01 Aligned_cols=283 Identities=8% Similarity=0.018 Sum_probs=173.6
Q ss_pred CCChHHHHHHHHHHHhcCCCCChhh-HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHH--HHHHHHHhcCcHHHH
Q 038401 172 NHKFVEALSVFAEMNEVNCPLDLTT-CNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYN--TLLRVYGEAELFGEA 248 (542)
Q Consensus 172 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a 248 (542)
.|++++|.+.+....+.. +++.. +........+.|+++.+...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 567777766666544432 12222 222234446667777777777776654 34433222 224556667777777
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 038401 249 IHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNA-------ITYSTIIAIWGKAGKLDRAAML 321 (542)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~ 321 (542)
.+.++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777776654 335566666677777777777777777777666543222 1222333333334445555566
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHH
Q 038401 322 FQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDIS 401 (542)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 401 (542)
++.+.+. .+.++.....+...+...|+.++|.+.+++..+....+.-..+.+....++.+++++..+...+. .+.|+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~ 329 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPL 329 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh-CCCCHH
Confidence 6555433 24466677777777777777777777777665533333222333334457777777777777765 345666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038401 402 VFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQE 463 (542)
Q Consensus 402 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 463 (542)
.+..++..+...+++++|.+.|+++.+ ..|+...+..+..++.+.|+.++|.++|++...
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777778888888888888888877 457777777777778888888888888877655
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2e-12 Score=113.46 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 038401 336 LYQTMIVAYERVGLVAHAKRLLHELRQPNT---IPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSR 412 (542)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 412 (542)
|...+..-|.-.++.++|...|+...+-|+ ..|..+..-|....+...|.+-++.+++-. +.|-..|-.|+.+|.-
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEI 410 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHH
Confidence 333444444444445555555544443222 223334444444455555555555554432 2344445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHH
Q 038401 413 NKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLES 491 (542)
Q Consensus 413 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 491 (542)
.+...-|+-+|+++.. ++| |+..|..|+.+|.+.++.++|++.|.++...+.+ .....+.++.+|.+.++.++|..
T Consensus 411 m~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred hcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHH
Confidence 5555555555555444 333 3444555555555555555555555555444311 11222224455555555555544
Q ss_pred HHHH
Q 038401 492 LFER 495 (542)
Q Consensus 492 ~~~~ 495 (542)
.+++
T Consensus 488 ~yek 491 (559)
T KOG1155|consen 488 YYEK 491 (559)
T ss_pred HHHH
Confidence 4444
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=6.8e-14 Score=131.44 Aligned_cols=286 Identities=7% Similarity=0.015 Sum_probs=163.4
Q ss_pred HCCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHhcCcHHH
Q 038401 171 ENHKFVEALSVFAEMNEVNCPLD-LTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVV--SYNTLLRVYGEAELFGE 247 (542)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~ 247 (542)
..|+++.|.+.+....+.. |+ ...+.....+....|+.+.+.+.+....+.. |+.. ........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 4566666666666655532 22 2233344455566667777777766665442 3332 22333555666677777
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH---HHhcCCHHHHHHHHH
Q 038401 248 AIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYS-TIIAI---WGKAGKLDRAAMLFQ 323 (542)
Q Consensus 248 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~---~~~~~~~~~a~~~~~ 323 (542)
|...++.+.+.. +.+...+..+...+.+.|++++|.+.+..+.+.+..++ ..+. .-..+ ....+..+.+.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777766654 33445566666667777777777777777666653322 2221 11111 112222222223333
Q ss_pred HHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHH---HHHHH--HHHhCCHHHHHHHHHHHHHcC
Q 038401 324 KLRSSGV---EIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRE---TAITI--LARAGRIEEATWVFRQAFDAG 395 (542)
Q Consensus 324 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~--~~~~g~~~~A~~~~~~~~~~~ 395 (542)
.+.+... +.++..+..+...+...|+.++|.+.+++..+..+.... ..+.. ....++.+.+.+.+++..+.
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 3333211 136666667777777777777777777776553332221 12221 22345667777777777665
Q ss_pred CCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038401 396 EVKDI--SVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQE 463 (542)
Q Consensus 396 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 463 (542)
.+.|+ ....+++..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23445 566677777888888888888888433333557777777778888888888888888877654
No 40
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.71 E-value=9.5e-11 Score=107.31 Aligned_cols=385 Identities=11% Similarity=0.155 Sum_probs=227.5
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC----------------CC------hHHHHHHH
Q 038401 125 VAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVEN----------------HK------FVEALSVF 182 (542)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----------------g~------~~~a~~~~ 182 (542)
..|.+|.+.|.+.|.+++|..+|++.... ..+...|+.+.++|+.- |+ ++-....|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 45677777778888888888888776654 22333444444444321 11 11222223
Q ss_pred HHHHhcC-----------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC------ChhHHHHHHHHHHhcCcH
Q 038401 183 AEMNEVN-----------CPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDP------SVVSYNTLLRVYGEAELF 245 (542)
Q Consensus 183 ~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~ 245 (542)
+.+.+.. -+-++..|..-+. ...|+..+-...+.++.+. +.| -...|..+...|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 3332211 1123333333222 2334555666666666543 122 133577788888889999
Q ss_pred HHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----------CCC-------CHHHHHHH
Q 038401 246 GEAIHLFRLMQRKEIEQN---VVTYNTMIKIYGKSLEHEKATNLMQEMQNRG----------IEP-------NAITYSTI 305 (542)
Q Consensus 246 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~p-------~~~~~~~l 305 (542)
+.|..+|++..+-..+.- ..+|......=.+..+++.|+++++....-- -.| +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999988876533211 2344444455556777888888877654321 111 23345666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC--CCC---CHHHHHHHHHH---
Q 038401 306 IAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQP--NTI---PRETAITILAR--- 377 (542)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~l~~~~~~--- 377 (542)
+...-..|-++....+|+.+.+..+- ++.+.......+....-++++.+++++-... -+. .|+..+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 66666778888889999998887654 4444444444556677788888888886642 222 24444443332
Q ss_pred hCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHH
Q 038401 378 AGRIEEATWVFRQAFDAGEVKDIS--VFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS--HIIALVLNSYGKLREFET 453 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 453 (542)
.-.++.|..+|+++++ |.+|... .|-.....--..|-...|+.+++++.. ++++.. ..|+..|.--...=-+..
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 2478999999999998 4554322 222222222356888889999999765 354533 566666653333333456
Q ss_pred HHHHHHHHHHcCCCCchHH--HHH--HHHHHhccCChHHHHHHHHHHhcC-CCCCchhHHHHHHHHHHhhcc
Q 038401 454 ADDLYSEMQEEGCVFSDQV--HFQ--MLSLYGARKDFNMLESLFERLDSD-SNINKKELHHVVAGIYERANR 520 (542)
Q Consensus 454 A~~~~~~~~~~~~~~~~~~--~~~--l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 520 (542)
.+.+|+++++.- |+.. ... .+..-.+.|..+.|+.++.--.+- +.....+.|...=..=.+.|+
T Consensus 641 TR~iYekaIe~L---p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 641 TREIYEKAIESL---PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred cHHHHHHHHHhC---ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 678888888863 4332 222 667778899999999888874332 222345677777777778888
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=7.6e-13 Score=116.02 Aligned_cols=329 Identities=14% Similarity=0.083 Sum_probs=235.9
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCc--HHHH
Q 038401 190 CPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQN--VVTY 267 (542)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 267 (542)
...|...+......+.+.|....|.+.|...... -+..|.+.+....-..+.+.+.. .... .+.+ ...-
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~----l~~~-l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSI----LVVG-LPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHH----HHhc-CcccchHHHH
Confidence 3445555555555667788888888888877643 12334443333322223332222 2211 1211 1112
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHH
Q 038401 268 NTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVE--IDPVLYQTMIVAYE 345 (542)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 345 (542)
--+..++......+++..-.......|++-+...-+....+.....|+++|+.+|+++.+.++- .|..+|+.++-.-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 2344566666788888888888888887766666666666777889999999999999987421 24566666553322
Q ss_pred HcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038401 346 RVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEK 425 (542)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 425 (542)
......---.....+.+-.+.+-..+..-|.-.++.++|...|+++++.++ .....|+.+++-|....+...|++-+++
T Consensus 311 ~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 222222212222233344566666778888889999999999999999753 4577899999999999999999999999
Q ss_pred HHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhcCCCCC
Q 038401 426 MRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDSDSNIN 503 (542)
Q Consensus 426 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 503 (542)
+++ +.| |-..|-.++.+|.-.+...=|+-+|+++.... |.|...+. |+.+|.+.++.++|++-+.+...-++.
T Consensus 390 Avd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 390 AVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 998 556 77999999999999999999999999999976 45666666 999999999999999999996544443
Q ss_pred chhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 504 KKELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
...++..|+++|.+.++.++|.++|++..+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457899999999999999999999998665
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.7e-16 Score=141.63 Aligned_cols=257 Identities=14% Similarity=0.164 Sum_probs=101.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 038401 269 TMIKIYGKSLEHEKATNLMQEMQNRGIEP-NAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERV 347 (542)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (542)
.+...+.+.|++++|+++++.......+| |...|..+.......++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555666666666666665443332122 3333344444555566677777777766655422 44455555555 566
Q ss_pred CCHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038401 348 GLVAHAKRLLHELRQ--PNTIPRETAITILARAGRIEEATWVFRQAFDAG-EVKDISVFGCMIELFSRNKKYANVIEVFE 424 (542)
Q Consensus 348 ~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 424 (542)
+++++|.+++...-+ +++..+...+..+...++++++.++++.+.... .+.++..|..++..+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 667777666655432 334445555666677777777777777766432 24577888888999999999999999999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHh-cCCC
Q 038401 425 KMRSAGYFPD-SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLD-SDSN 501 (542)
Q Consensus 425 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~-~~~~ 501 (542)
++++ ..|+ ......++..+...|+.+++.++++...+.. ++++..+. ++.++...|++++|..++++.. ..|+
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 9998 4474 6778888899999999999888888887765 22333333 8899999999999999999954 3554
Q ss_pred CCchhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 502 INKKELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 502 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
+......+++++...|+.++|.++++++.+
T Consensus 247 --d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 --DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp ---HHHHHHHHHHHT-----------------
T ss_pred --cccccccccccccccccccccccccccccc
Confidence 557788899999999999999999887654
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=5.4e-16 Score=138.46 Aligned_cols=261 Identities=15% Similarity=0.133 Sum_probs=86.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 038401 24 VVLRNVLRAKQWELAHGLFDEMRQRG-IAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKL 102 (542)
Q Consensus 24 ~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (542)
.+...+.+.|++++|.++++...... .+.+...|..+.......++++.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45666777777777777775443332 2234455555555666677777777777777665433 45555566665 566
Q ss_pred CCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCChHHHHHH
Q 038401 103 SDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQG-VKPDTVSYSTLLNLYVENHKFVEALSV 181 (542)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 181 (542)
+++++|.++++...+. .+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777665544 3455556666666777777777777777765432 234556666667777777777777777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 038401 182 FAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIE 261 (542)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 261 (542)
+++..+.. |.|....+.++..+...|+.+++..++....+.. +.|+..+..+..++...|+.++|+..++...... +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 77776654 2346666667777777777777666666666543 4455566666777777777777777777766653 3
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 038401 262 QNVVTYNTMIKIYGKSLEHEKATNLMQEMQ 291 (542)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (542)
.|......+..++...|+.++|..+..+..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 356666666777777777777776665543
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=5.7e-13 Score=124.49 Aligned_cols=281 Identities=12% Similarity=0.081 Sum_probs=165.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHH--HHHHHHhccCcHHHH
Q 038401 67 EGMFDSAISWLQQMEQDRVSGDLVL-YSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYN--TMINVFGKAKLFKEA 143 (542)
Q Consensus 67 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 143 (542)
.|+++.|.+.+....+.. +++.. +.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577777776666554432 12222 222334446677777777777776654 44433222 224566667777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHhccCCHHHHHHH
Q 038401 144 RLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDL-------TTCNIMIDVYGQLDMAKDADRL 216 (542)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 216 (542)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777776654 224556666677777777777777777777665433211 1233333333334444555555
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 038401 217 FWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIE 296 (542)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (542)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. +++... .++.+....++.+++.+.++...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 5544332 1345666666777777777777777777776663 334321 12333344577777777777766552 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 038401 297 PNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHEL 360 (542)
Q Consensus 297 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (542)
-|+..+..+...+...+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445666667777777777777777777765 566677677777777777777777777664
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.1e-12 Score=115.85 Aligned_cols=409 Identities=14% Similarity=0.076 Sum_probs=241.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcc-HhHHHHHHHHH
Q 038401 57 YSTLITCFGKEGMFDSAISWLQQMEQDRVSGD-LVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPD-LVAYNTMINVF 134 (542)
Q Consensus 57 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 134 (542)
+-...+-|.++|++++|+++|.+.+.. .|+ +..|.....+|...|++++..+--.+..+. .|+ ...+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 334555677888999999999988875 566 777888888888999999888887777764 444 33445555666
Q ss_pred hccCcHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh-cC--CCCChhhHHHHHHHHhccCCH
Q 038401 135 GKAKLFKEARLLIEEMRE-QGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNE-VN--CPLDLTTCNIMIDVYGQLDMA 210 (542)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~ 210 (542)
-..|++++|+.=..-..- .|+. +..+ ..++.--.+ ..+....++-.. .+ +-|+.....+....+... +
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~ 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--P 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--c
Confidence 667777766543222211 1111 1111 111111111 111222222222 11 123333333322222110 0
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHH----Hh-cCcHHHHHHHHHHHHhc---CCCC---c------HHHHHHHHHH
Q 038401 211 KDADRLFWSMRKMGIDPSVVSYNTLLRVY----GE-AELFGEAIHLFRLMQRK---EIEQ---N------VVTYNTMIKI 273 (542)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~-~~~~~~a~~~~~~~~~~---~~~~---~------~~~~~~l~~~ 273 (542)
. ..+. .+.......+..++ .. ...+..|...+.+-... .... | ..+.......
T Consensus 266 ~------~~~~----~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 266 K------PLFD----NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred c------cccc----CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 0 0000 00011111111111 00 01123333322221110 0000 1 1111112223
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038401 274 YGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHA 353 (542)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (542)
+.-.|+.-.|..-|+..+.....++. .|-.+...|....+.++....|++..+.+ +-++.+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 34467888888888888876433332 37777778888899999999999988876 44667777777777778889999
Q ss_pred HHHHHHhcCCCCCC---HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038401 354 KRLLHELRQPNTIP---RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAG 430 (542)
Q Consensus 354 ~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 430 (542)
..-|++....++.. +..+.-+..+.++++++...|+..++. ++..+..|+.....+..+++++.|.+.|+...+
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 99898887654443 444455566788999999999999886 667788899999999999999999999998887
Q ss_pred CCCC-------HHHH--HHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH-HHHH-HHHHHhccCChHHHHHHHHHH
Q 038401 431 YFPD-------SHII--ALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ-VHFQ-MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 431 ~~p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~-l~~~~~~~g~~~~A~~~~~~~ 496 (542)
+.|. ...+ ..++ .+.-.+++..|.++++++.+.+ |.. ..+. |+....+.|+.++|+++|++.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D---pkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD---PKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC---chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3343 2222 1122 2223488889999999999876 433 3344 889999999999999999984
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.8e-12 Score=112.51 Aligned_cols=218 Identities=14% Similarity=0.124 Sum_probs=171.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHhCCHHHHH
Q 038401 309 WGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ---PNTIPRETAITILARAGRIEEAT 385 (542)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 385 (542)
+.-.|+.-.|..-|+..++....+ ...|-.+...|....+.++....|.+... .++..|..-..+..-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 334688889999999998875433 33377777789999999999999998765 45566666777888889999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 386 WVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.-|++.+... +.++..|-.+..+..+.++++++...|++..+. ++-.+..|+.....+...+++++|.+.|+.+++..
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999999863 356777888888888999999999999999873 54467899999999999999999999999999976
Q ss_pred CC------CchHHHHHHHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHH
Q 038401 466 CV------FSDQVHFQMLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 466 ~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 531 (542)
.. .+.+...--.-++.=.+++++|..++++ +..+|. ...+|..|+.+-...|+.++|+++|++.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk--ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK--CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch--HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22 1111111111122235999999999999 455554 6789999999999999999999999984
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2.2e-14 Score=131.52 Aligned_cols=287 Identities=13% Similarity=0.072 Sum_probs=219.6
Q ss_pred CcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038401 243 ELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRG--IEPNAITYSTIIAIWGKAGKLDRAAM 320 (542)
Q Consensus 243 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~ 320 (542)
-+..+|...|..+..+ +..+......+..+|...+++++|.++|+.+.+.. ..-+...|.+.+--+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3467888899885444 34455677788999999999999999999998762 12256677777654322 12222
Q ss_pred -HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCC-C--CHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 038401 321 -LFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNT-I--PRETAITILARAGRIEEATWVFRQAFDAGE 396 (542)
Q Consensus 321 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 396 (542)
+-+.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+.++ . .++.+..-+.....+|.|...|+.++...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 333444443 55789999999999999999999999999988665 3 34444555677889999999999997642
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH
Q 038401 397 VKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ 475 (542)
Q Consensus 397 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 475 (542)
+.+...|-.++..|.++++++.|+-.|+++++ +.| +......++..+.+.|+.++|+++++++...+... ...-+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn-~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN-PLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC-chhHHH
Confidence 12344555677889999999999999999998 667 55777788889999999999999999999987221 222333
Q ss_pred HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCCCC
Q 038401 476 MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRTFNSS 540 (542)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 540 (542)
.+.++...+++++|...+++++.-- ++....+..++.+|-+.|+.+.|+.-|-=|.+-.+++..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 8889999999999999999986532 225678999999999999999999998888776665543
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=5.5e-13 Score=125.32 Aligned_cols=288 Identities=11% Similarity=0.050 Sum_probs=183.1
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccH--hHHHHHHHHHhccCcHH
Q 038401 65 GKEGMFDSAISWLQQMEQDRVSGD-LVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDL--VAYNTMINVFGKAKLFK 141 (542)
Q Consensus 65 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 141 (542)
...|+++.|.+.+.+..+.. |+ ...+.....+....|+++.|.+.+.+..+. .|+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 35788888888887776653 33 233344456677778888888888887654 3333 23333466777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHH-HHHHHH---hccCCHHHHHHHH
Q 038401 142 EARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCN-IMIDVY---GQLDMAKDADRLF 217 (542)
Q Consensus 142 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~ 217 (542)
.|...++.+.+.+ +-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..++..+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888764 235567777888888888888888888888777543 222221 111111 2222223333344
Q ss_pred HHHHHCCC---CCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038401 218 WSMRKMGI---DPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVT-YNTMIKIYGKSLEHEKATNLMQEMQNR 293 (542)
Q Consensus 218 ~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (542)
..+..... +.+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44443321 13667777778888888888888888888877632221111 111122223456777788877777665
Q ss_pred CCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 038401 294 GIEPN-A--ITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHEL 360 (542)
Q Consensus 294 ~~~p~-~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (542)
.|+ + .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333 3 4455677778888888888888885444334677777778888888888888888888775
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.67 E-value=1.1e-10 Score=106.91 Aligned_cols=496 Identities=11% Similarity=0.137 Sum_probs=302.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038401 19 VFAYNVVLRNVLRAKQWELAHGLFDEMRQR-GIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIE 97 (542)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 97 (542)
+..|-..+..+.++|+.......|++.+.. .+.....+|...+......|-++-++++|++.++. ++..-.-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 456777788888999999999999888764 23334558999999888999999999999999875 4444667788
Q ss_pred HHHhcCCHHHHHHHHHHhHhCC------CCccHhHHHHHHHHHhccCcHH---HHHHHHHHHHHcCCCCC--HHHHHHHH
Q 038401 98 LARKLSDYSKAISIFSRLKSSG------IVPDLVAYNTMINVFGKAKLFK---EARLLIEEMREQGVKPD--TVSYSTLL 166 (542)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g~~~~--~~~~~~l~ 166 (542)
.++..+++++|.+.+..+.... .+.+...|.-+....+++-+.- ....+++.+... -+| ...|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 8889999999999998876431 2445566766666655544332 334445554443 344 35789999
Q ss_pred HHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCC----------------------HHHHHHHHHHHHHCC
Q 038401 167 NLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDM----------------------AKDADRLFWSMRKMG 224 (542)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~ 224 (542)
+.|.+.|.+++|.++|++....- ....-|..+.++|+.-.. ++-....|+.+....
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 99999999999999999987643 233444444444432211 111222233332211
Q ss_pred -----------CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHccCCHHHHHHHH
Q 038401 225 -----------IDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQ------NVVTYNTMIKIYGKSLEHEKATNLM 287 (542)
Q Consensus 225 -----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (542)
-+.++..|..-+. ...|+..+-...|.+..+. +.| -...|..+.+.|-..|+.+.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 0111222222111 2345666777777776654 111 2346777888888888888888888
Q ss_pred HHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------------CCHHHHHHHHHHHHHc
Q 038401 288 QEMQNRGIEPN---AITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVE-----------------IDPVLYQTMIVAYERV 347 (542)
Q Consensus 288 ~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~ 347 (542)
++...-..+-- ..+|..-...-.++.+++.|+++.+......-. .+..+|...++.-...
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 88776532211 234555555556777888888888776543111 1234455555555667
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHH---HHHHHHhCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHh---cCCHHHHH
Q 038401 348 GLVAHAKRLLHELRQPNTIPRETA---ITILARAGRIEEATWVFRQAFDAGEVKD-ISVFGCMIELFSR---NKKYANVI 420 (542)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~ 420 (542)
|-++....+++++......+...+ +..+-...-++++.+++++-+..-..|+ ...|+..+.-+.+ ....+.|.
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 777777777777766444443333 3334455667778887777766533444 3467766665543 23577888
Q ss_pred HHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhc-----cCChHHHHHHH
Q 038401 421 EVFEKMRSAGYFPDS--HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGA-----RKDFNMLESLF 493 (542)
Q Consensus 421 ~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~ 493 (542)
.+|+++++ |.+|.. ..|......-.+.|....|..+|+++...- +...-+.+.++|.+ -| ...-+.++
T Consensus 571 dLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v---~~a~~l~myni~I~kaae~yG-v~~TR~iY 645 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV---KEAQRLDMYNIYIKKAAEIYG-VPRTREIY 645 (835)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhC-CcccHHHH
Confidence 88888887 555543 223222233345677788888888876643 22222223333332 11 11223344
Q ss_pred HH-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHH
Q 038401 494 ER-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNR 530 (542)
Q Consensus 494 ~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 530 (542)
++ +..-|+....+.....++.=.+.|..+-|..+|.-
T Consensus 646 ekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 646 EKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 44 23333333446666777777788888888877765
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.67 E-value=1.1e-12 Score=123.90 Aligned_cols=221 Identities=13% Similarity=0.161 Sum_probs=147.5
Q ss_pred hhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 038401 5 ILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDR 84 (542)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 84 (542)
++..+. ..|+.|+-.+|..+|..|+..|+.+.|- +|.-|..+..+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e-~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHE-ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHH-HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 334444 6789999999999999999999999998 8888887766666666777777666666655443
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHhHh----CCC-----------------CccHhH----------HHHH
Q 038401 85 VSGDLVLYSNLIELARKLSDYSK---AISIFSRLKS----SGI-----------------VPDLVA----------YNTM 130 (542)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~-----------------~~~~~~----------~~~l 130 (542)
.|.+.+|..|..+|...||... +.+.+..+.. .|. -||... |..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 4566677777777777766543 2221111111 111 111111 1111
Q ss_pred HHHH-------------------hc-cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCC
Q 038401 131 INVF-------------------GK-AKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNC 190 (542)
Q Consensus 131 ~~~~-------------------~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 190 (542)
+... .. ...+++-..+.....+ .|+..+|..++.+-...|+.+.|..++.+|.+.|+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 1111 11 1111222222222222 47888999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCc
Q 038401 191 PLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAEL 244 (542)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 244 (542)
+.+.+-|-.++-+ .++...+..++.-|...|+.|+..|+...+-.+..+|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9888888777765 77888888889999999999999998887777666443
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.2e-11 Score=111.58 Aligned_cols=468 Identities=13% Similarity=0.096 Sum_probs=304.2
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 038401 17 PSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLI 96 (542)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 96 (542)
.+..-+..+++-+..+.++.-|.-+-+.....+. |+..---+.+++.-.|++.+|..+...-.-. ..|..+.....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 3455677777777777888888888777776654 4444455667777788888887776553221 24667777777
Q ss_pred HHHHhcCCHHHHHHHHHHhHhC--C-----------CCccHhH----HHHHH-------HHHhccCcHHHHHHHHHHHHH
Q 038401 97 ELARKLSDYSKAISIFSRLKSS--G-----------IVPDLVA----YNTMI-------NVFGKAKLFKEARLLIEEMRE 152 (542)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~--~-----------~~~~~~~----~~~l~-------~~~~~~~~~~~a~~~~~~~~~ 152 (542)
.++.+..++++|..++...... . +.++..- -+.-. ..|....+.++|...|.+...
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 8888888888888887722100 0 0111100 01111 223334455666666666554
Q ss_pred cCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCC----CCChhhHHHHHHHH-hccCCHHHHHHHHHHHHHCCCCC
Q 038401 153 QGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNC----PLDLTTCNIMIDVY-GQLDMAKDADRLFWSMRKMGIDP 227 (542)
Q Consensus 153 ~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 227 (542)
. |...+..+...-.. ..-.+.+.+..+...+. ..+......+.... ++..+. .....-.+..-.+...
T Consensus 170 ~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~~l~~ 242 (611)
T KOG1173|consen 170 A----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLIGLAE 242 (611)
T ss_pred c----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhhhhhh
Confidence 3 44443333221110 11111122222221110 01111111111111 000000 0000000011112344
Q ss_pred ChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038401 228 SVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIA 307 (542)
Q Consensus 228 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 307 (542)
+.........-+...+++.+..++.+.+.+.. +++...+..-|.++...|+..+-..+=.++.+.- +..+.+|-.+.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 56666666777888899999999999988874 5566666666778888999888888888888762 445678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHhCCHHHH
Q 038401 308 IWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ---PNTIPRETAITILARAGRIEEA 384 (542)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 384 (542)
-|...|+..+|.+.|.+....+. .=...|..+...|.-.|..++|+..+....+ ....|.-.+..-|.+.++++.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 88888999999999998876532 2356788889999999999999998887654 4455666666778889999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHhccCcHHHHHHHH
Q 038401 385 TWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA--GYFP----DSHIIALVLNSYGKLREFETADDLY 458 (542)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 458 (542)
.++|.++... .|.|+...+.++-.....+.+.+|..+|+..+.. .+.+ -..+++.++.+|.+.+++++|+..+
T Consensus 400 e~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 9999999886 4578899999988888899999999999988731 1111 2356888999999999999999999
Q ss_pred HHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCC
Q 038401 459 SEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSN 501 (542)
Q Consensus 459 ~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~ 501 (542)
++++... +.+..++. ++-+|...|+++.|++.|.+ +-..|+
T Consensus 479 q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 479 QKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 9999976 23344444 88999999999999999999 555555
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=5.4e-11 Score=101.02 Aligned_cols=441 Identities=12% Similarity=0.104 Sum_probs=264.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 038401 26 LRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDY 105 (542)
Q Consensus 26 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 105 (542)
+.-+....++..|+.+++.-...+-.-...+-.-+..++.+.|++++|+..|..+... -.++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 5667778899999999987765443322223333556778899999999999988775 356777777777777888999
Q ss_pred HHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 038401 106 SKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEM 185 (542)
Q Consensus 106 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 185 (542)
.+|.++-.... .++-.-..|+....+.++-++-..+.+.+.. ....--+|.......-.+.+|++++...
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988866643 3445555666777788888888877777765 3344556777777777899999999999
Q ss_pred HhcCCCCChhhHHHHH-HHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcH
Q 038401 186 NEVNCPLDLTTCNIMI-DVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNV 264 (542)
Q Consensus 186 ~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 264 (542)
...+ |+-...|..+ -+|.+..-++-+.+++.-..+.- +.++...|..+....+.=+-..|..-...+.+.+...
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 8765 5555555544 45677888888888888777652 3333444444433333323333444444444432111
Q ss_pred HHHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038401 265 VTYNTMIKIYGK-----SLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQT 339 (542)
Q Consensus 265 ~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (542)
| ..+.-+++ -.+-+.|++++-.+.+. .|. .-..++--|.+.+++.+|..+.+++.-. .|-..+...
T Consensus 253 --~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKg 323 (557)
T KOG3785|consen 253 --Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKG 323 (557)
T ss_pred --c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHH
Confidence 1 11111222 23446677777666654 332 3334455567778888887776655322 232233222
Q ss_pred HHHHH-----HHcCCHHHHHHHHHHhcC----CCCCC-HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 038401 340 MIVAY-----ERVGLVAHAKRLLHELRQ----PNTIP-RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIEL 409 (542)
Q Consensus 340 l~~~~-----~~~~~~~~a~~~~~~~~~----~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (542)
++.+- .......-|.+.|+-.-. .+..+ ...+...+.-..++++.+.++..+..--...|...+ .+..+
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence 22221 112234445566655432 23333 344555566667777777777766554222334333 36777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHhccCCh
Q 038401 410 FSRNKKYANVIEVFEKMRSAGYFPDSHIIA-LVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ--MLSLYGARKDF 486 (542)
Q Consensus 410 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~ 486 (542)
++..|++.+|+++|-++..-.++ |..+|. .+.++|.+.++++-|..++ ++.+ .+.+..... ++..|.+++.+
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~-t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM---LKTN-TPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH---HhcC-CchhHHHHHHHHHHHHHHHHHH
Confidence 78888888888888666542232 334443 4556777888877775554 3333 122222222 55667777777
Q ss_pred HHHHHHHHHHh
Q 038401 487 NMLESLFERLD 497 (542)
Q Consensus 487 ~~A~~~~~~~~ 497 (542)
--|.+.|..++
T Consensus 478 yyaaKAFd~lE 488 (557)
T KOG3785|consen 478 YYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhHHH
Confidence 77777777654
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-11 Score=111.72 Aligned_cols=469 Identities=12% Similarity=0.045 Sum_probs=304.1
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHH
Q 038401 53 DRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMIN 132 (542)
Q Consensus 53 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 132 (542)
+..-+..+++-+..+.++..|.-+-++....+..|+. ---+.+++.-.|+++.|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 3444556666666677788888888887766544443 334667777788888888877654322 457777888888
Q ss_pred HHhccCcHHHHHHHHHHH----HHcC---------CCCCHHH-----------HHHHHHHHHHCCChHHHHHHHHHHHhc
Q 038401 133 VFGKAKLFKEARLLIEEM----REQG---------VKPDTVS-----------YSTLLNLYVENHKFVEALSVFAEMNEV 188 (542)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~----~~~g---------~~~~~~~-----------~~~l~~~~~~~g~~~~a~~~~~~~~~~ 188 (542)
++.+..++++|..++..- ..-. +.++..- +-.-...|....+.++|...|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 889999999999998822 1100 0111100 000112344445566666666666543
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHH
Q 038401 189 NCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKM-GIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTY 267 (542)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 267 (542)
++. ....+..++....-. ..+-+.+++.+.-. -...+......+.........-+.....-.+..-.+...+....
T Consensus 171 D~~-c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll 247 (611)
T KOG1173|consen 171 DAK-CFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLL 247 (611)
T ss_pred chh-hHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHH
Confidence 211 222222222222111 11112222210000 00112222222222110000000000000101111234455666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 038401 268 NTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERV 347 (542)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (542)
..-.+-+...+++.+..++.+...+.. +++...+..-|.++...|+..+-..+=.++++. .|..+.+|-++.--|...
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 667777888999999999999988763 556666777777888999988888888888876 355788999999999999
Q ss_pred CCHHHHHHHHHHhcCCC---CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038401 348 GLVAHAKRLLHELRQPN---TIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFE 424 (542)
Q Consensus 348 ~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 424 (542)
|...+|.+.|.+...-+ ...|-.....+.-.|..+.|+..+..+-+.- +-.-..+--++--|.+.++..-|.+.|.
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999876533 3457778888999999999999999887752 2222223334556888999999999999
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCCCc-hHHHHH-HHHHHhccCChHHHHHHHHH-H
Q 038401 425 KMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEE----GCVFS-DQVHFQ-MLSLYGARKDFNMLESLFER-L 496 (542)
Q Consensus 425 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~-l~~~~~~~g~~~~A~~~~~~-~ 496 (542)
++.. +.| |+..++.++-.....+.+.+|..+|+..+.. ....+ ...++. ++.++.+.+.+++|+..+++ +
T Consensus 405 ~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 405 QALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 9987 556 5677888888888899999999999998832 11111 223344 99999999999999999999 5
Q ss_pred hcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 497 DSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
...|. +...|..++-+|...|+.+.|++.|.+.+...
T Consensus 483 ~l~~k--~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 483 LLSPK--DASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HcCCC--chhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 55554 56789999999999999999999999987655
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=2.7e-12 Score=110.84 Aligned_cols=294 Identities=14% Similarity=0.083 Sum_probs=153.6
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 038401 137 AKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRL 216 (542)
Q Consensus 137 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 216 (542)
.|++.+|+++..+-.+.+-. ....|..-+++.-..|+.+.+-.++.+..+..-.++..............|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 45555555555554444322 22233333444445555555555555554442233344444444445555555555555
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 038401 217 FWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIE 296 (542)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (542)
+..+.+.+ +.++........+|.+.|++.....++..+.+.+.-.+...-.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 55555443 3344445555555555555555555555555544332221000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 038401 297 PNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILA 376 (542)
Q Consensus 297 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 376 (542)
....+|..+++-....+..+.-...|+..... .+-++..-.+++.-+.++|+.++|.++..+..+....+.-...-.+.
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l 305 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRL 305 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhc
Confidence 00123333444333333333333344433322 12234444455555555555555555555544332222211222233
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 038401 377 RAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADD 456 (542)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 456 (542)
+-++...-++..++..+. .+.++..+..|+..|.+++.|.+|.+.|+...+ ..|+..+|..+..++.+.|+.++|.+
T Consensus 306 ~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred CCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHH
Confidence 445555555555555554 345667778888888888888888888887777 55888888888888888888888888
Q ss_pred HHHHHHHc
Q 038401 457 LYSEMQEE 464 (542)
Q Consensus 457 ~~~~~~~~ 464 (542)
..++.+..
T Consensus 383 ~r~e~L~~ 390 (400)
T COG3071 383 VRREALLL 390 (400)
T ss_pred HHHHHHHH
Confidence 88877643
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=4e-12 Score=106.42 Aligned_cols=287 Identities=14% Similarity=0.098 Sum_probs=209.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCcc---HhHHHHHHHHHhccCcHHHH
Q 038401 67 EGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPD---LVAYNTMINVFGKAKLFKEA 143 (542)
Q Consensus 67 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 143 (542)
..+.++|.+.|-+|.+... .+..+..+|.+.+.+.|..+.|+.+.+.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 5678899999999988532 2556677888999999999999999999887521111 23445566778889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHH
Q 038401 144 RLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDL----TTCNIMIDVYGQLDMAKDADRLFWS 219 (542)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 219 (542)
+.+|..+.+.|. --......|+..|-...+|++|+++-.++...+..+.. ..|--+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999988642 24556778899999999999999999988876643332 2244455556667788999999999
Q ss_pred HHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 038401 220 MRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNA 299 (542)
Q Consensus 220 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 299 (542)
..+.+ +.++..--.+.+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+..+.+.. ++.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 88775 445555666778888999999999999999988766667788889999999999999999999988773 344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHh
Q 038401 300 ITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERV---GLVAHAKRLLHEL 360 (542)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~ 360 (542)
..-..+..........+.|...+.+-+.. .|+...+..++..-... |...+....+++|
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 44444444444455566777666665555 68888888888875442 2344444444444
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=5.7e-12 Score=105.52 Aligned_cols=290 Identities=14% Similarity=0.094 Sum_probs=224.8
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCCHHHH
Q 038401 32 AKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGD---LVLYSNLIELARKLSDYSKA 108 (542)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 108 (542)
..+.++|.+.|-+|.+.... +.++.-+|.+.|.+.|..+.|+++.+.+.++.--+. ......|.+-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46899999999999986432 566777899999999999999999999987621111 12344567778999999999
Q ss_pred HHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCChHHHHHHHHH
Q 038401 109 ISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPD----TVSYSTLLNLYVENHKFVEALSVFAE 184 (542)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 184 (542)
..+|..+.+.+ .--......|+..|-...++++|.++-+++.+.|-.+. ...|.-|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998754 44567788999999999999999999999998765443 23566677777788999999999999
Q ss_pred HHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcH
Q 038401 185 MNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNV 264 (542)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 264 (542)
..+.+ +..+..--.+.+.....|+++.|.+.++.+.+.+...-+.+...|..+|...|+.++....+..+.+.. +..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 98876 335555566778899999999999999999988655566788899999999999999999999988764 333
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q 038401 265 VTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGK---AGKLDRAAMLFQKLRSS 328 (542)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 328 (542)
..-..+...-....-.+.|...+.+-... +|+...+..++..-.. .|...+-+..+++|...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 34444444444555567777777776666 7999999999986543 33455556666666543
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=4.3e-11 Score=101.64 Aligned_cols=449 Identities=13% Similarity=0.123 Sum_probs=287.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcH
Q 038401 61 ITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLF 140 (542)
Q Consensus 61 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 140 (542)
+.-+....++..|+.+++.-...+-+....+-.-+..++...|++++|...+..+.+.. .++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34455677888888888876544322222233334567779999999999999888754 56677777777777778888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038401 141 KEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSM 220 (542)
Q Consensus 141 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (542)
.+|..+-....+ +.-.-..++....+.++-++-..+-+.+.+. ..--.++.......-.+.+|.+++.+.
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888887665432 2333344455555677766666655554432 222334444444556789999999999
Q ss_pred HHCCCCCChhHHHHH-HHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 038401 221 RKMGIDPSVVSYNTL-LRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNA 299 (542)
Q Consensus 221 ~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 299 (542)
... .|+-...|.- .-+|.+..-++-+.+++.-..+. ++.+....|..+....+.-+-..|..-...+.+.+-..
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 876 3454444443 34567777788888888877765 34455556655555555444445555555555543211
Q ss_pred HHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHH
Q 038401 300 ITYSTIIAIWGK-----AGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITI 374 (542)
Q Consensus 300 ~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 374 (542)
|. .+.-+++ -.+-+.|++++-.+.+. .|. .-..|+--|.+.+++++|..+..++... .|+..++.+
T Consensus 253 --~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKg 323 (557)
T KOG3785|consen 253 --YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKG 323 (557)
T ss_pred --ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHH
Confidence 11 1122222 23557888888877764 333 3345666789999999999998887543 344444443
Q ss_pred H--HHh-------CCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038401 375 L--ARA-------GRIEEATWVFRQAFDAGEVKD-ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNS 444 (542)
Q Consensus 375 ~--~~~-------g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 444 (542)
. ... ....-|.+.|+..-+.+..-| +.--.++..++.-..++++.+.+++.+...=...|...+ .+..+
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence 2 222 345566666666544443322 223345566666677899999999888774222333333 57889
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchh
Q 038401 445 YGKLREFETADDLYSEMQEEGCVFSDQVHFQ--MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLN 522 (542)
Q Consensus 445 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 522 (542)
++..|.+.+|.++|-++.... + .+...|. ++.+|.++|+.+-|..++-+...... .-.....++..|++.+.+=
T Consensus 403 k~atgny~eaEelf~~is~~~-i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e--~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPE-I-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSE--RFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHhcChHHHHHHHhhhcChh-h-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876533 2 3344444 88999999999999999887653222 2345666788899999988
Q ss_pred hHHHHHHHHHhcCCCCC
Q 038401 523 DASRIMNRMNKRRTFNS 539 (542)
Q Consensus 523 ~A~~~~~~~~~~~~~~~ 539 (542)
=|.+.|+..-...+.|.
T Consensus 479 yaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 479 YAAKAFDELEILDPTPE 495 (557)
T ss_pred HHHHhhhHHHccCCCcc
Confidence 88888888777666654
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.62 E-value=1.1e-09 Score=100.83 Aligned_cols=448 Identities=13% Similarity=0.152 Sum_probs=274.7
Q ss_pred hhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038401 3 VAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQ 82 (542)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 82 (542)
+++.+.+.+.. +-..++.....-.+...|+-++|......-.+.++. +...|+.+.-.+....++++|++.|...+.
T Consensus 27 LK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 27 LKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred HHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 44555566543 333344444444456678888888887777775554 677888888888888888888888888887
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcC-CCCCHHH
Q 038401 83 DRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQG-VKPDTVS 161 (542)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~ 161 (542)
.+. .|...+.-+.-.-++.++++........+.+.. +.....|..+..+..-.|+...|..++++..+.. -.|+...
T Consensus 104 ~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 104 IEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred cCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 753 366777777777777888888877777777652 3345667777888888888888888888887654 2455555
Q ss_pred HHHHH------HHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHH
Q 038401 162 YSTLL------NLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTL 235 (542)
Q Consensus 162 ~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 235 (542)
+.-.. ....+.|.+++|++.+...... +......-..-...+.+.++.++|..++..+... .||..-|...
T Consensus 182 ~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~ 258 (700)
T KOG1156|consen 182 YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEG 258 (700)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHH
Confidence 43322 3345677788888777665442 1112223344556677888889999998888876 3665555544
Q ss_pred HH-HHHhcCcHHHHH-HHHHHHHhcCCCCcHHHHHHH-HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038401 236 LR-VYGEAELFGEAI-HLFRLMQRKEIEQNVVTYNTM-IKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKA 312 (542)
Q Consensus 236 l~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 312 (542)
+. ++.+..+..++. .+|....+.- |....-..+ +.......-.+..-.++..+.+.|+++ ++..+...|-..
T Consensus 259 l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p 333 (700)
T KOG1156|consen 259 LEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDP 333 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhch
Confidence 43 443333333333 5555554431 111111111 111111222344555666777777654 333444433322
Q ss_pred CCHHHHHHHHHHHHh----cC----------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHH---HH
Q 038401 313 GKLDRAAMLFQKLRS----SG----------VEIDPVLY--QTMIVAYERVGLVAHAKRLLHELRQPNTIPRETA---IT 373 (542)
Q Consensus 313 ~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~ 373 (542)
...+-..++...+.. .| -+|+...| -.+...+-..|+++.|...++......+...... ..
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaR 413 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKAR 413 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 222211111111111 10 14555444 4466778889999999999998887666554433 46
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CH----HHHH--HHHHHH
Q 038401 374 ILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP--DS----HIIA--LVLNSY 445 (542)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~----~~~~--~l~~~~ 445 (542)
.+...|.+++|...++++.+.+ .+|...-.--+.-..+.++.++|.++.....+.|... +. -.|- .=+.+|
T Consensus 414 I~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay 492 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAY 492 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHH
Confidence 7888899999999999998864 3555544455566678889999999988887766411 11 1121 124577
Q ss_pred hccCcHHHHHHHHHHHHHc
Q 038401 446 GKLREFETADDLYSEMQEE 464 (542)
Q Consensus 446 ~~~g~~~~A~~~~~~~~~~ 464 (542)
.+.|++..|++-|..+.+.
T Consensus 493 ~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 493 LRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 7888888888877776654
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=2.3e-11 Score=105.26 Aligned_cols=284 Identities=11% Similarity=0.054 Sum_probs=158.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHH
Q 038401 67 EGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLL 146 (542)
Q Consensus 67 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 146 (542)
.|++..|.+...+-.+.+.. ....|..-.++..+.||.+.+-.++.+..+..-.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 56666666666665554422 22334444455556666666666666665542234444445555555666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHhccCCHHHHHHHHHH
Q 038401 147 IEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDL-------TTCNIMIDVYGQLDMAKDADRLFWS 219 (542)
Q Consensus 147 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 219 (542)
++++.+.+. ..........++|.+.|++.....++..+.+.+.-.++ .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 666555432 24445555566666666666666666666665543332 3455555555554444444444444
Q ss_pred HHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 038401 220 MRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNA 299 (542)
Q Consensus 220 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 299 (542)
.... .+.++....+++.-+.+.|+.++|.++..+..+++..|+ -...-.+.+.++.+.-++..++-.+.. +-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 4332 134455555666666666777777766666666654444 111223345556555555555543331 2233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 038401 300 ITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHEL 360 (542)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (542)
..+.++...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 55666666666777777777777765554 566666777777777777777666666553
No 60
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=6.6e-13 Score=121.97 Aligned_cols=281 Identities=14% Similarity=0.101 Sum_probs=217.7
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHccCCHHHHHHH
Q 038401 209 MAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEI--EQNVVTYNTMIKIYGKSLEHEKATNL 286 (542)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 286 (542)
...+|...|..+..+ +.-+..+...+..+|...+++++|.++|+.+.+... ..+...|...+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 457788888885544 233446677788999999999999999999988632 2366777777765433 223333
Q ss_pred HH-HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCC
Q 038401 287 MQ-EMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNT 365 (542)
Q Consensus 287 ~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 365 (542)
+. .+.+. -+-.+.+|..+..+|.-.++.+.|++.|++....+ +-...+|+.+..-+....++|.|...|+.....++
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 32 23333 24467899999999999999999999999999864 22678888888888999999999999999998888
Q ss_pred CCHHHH---HHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 038401 366 IPRETA---ITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALV 441 (542)
Q Consensus 366 ~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 441 (542)
..|++. ...|.+.++++.|+-.|+++++.++ .+.+....++..+.+.|+.++|+.+++++...+ | |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhHHHH
Confidence 777665 6679999999999999999999753 456667778888899999999999999999843 4 44444455
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHhccCChHHHHHHHHHH-hcCCC
Q 038401 442 LNSYGKLREFETADDLYSEMQEEGCVFSDQV-HFQMLSLYGARKDFNMLESLFERL-DSDSN 501 (542)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 501 (542)
+..+...+++++|+..++++.+.- |.+.. ++.++.+|.+.|+.+.|+..|.-+ ..+|.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v--P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV--PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 667788999999999999999864 33333 333899999999999999999884 44443
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.58 E-value=2.5e-09 Score=98.44 Aligned_cols=469 Identities=11% Similarity=0.083 Sum_probs=241.3
Q ss_pred HHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 038401 29 VLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKA 108 (542)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 108 (542)
+...+++...++..+.+++. .+-...+.....-.+...|+-++|......-.+..+ .+...|..+.-.+....++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHH
Confidence 34557777777777777764 333445555555555667777777777776665433 3666777777777777777788
Q ss_pred HHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhc
Q 038401 109 ISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEV 188 (542)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 188 (542)
++.|......+ +.|...+.-+.-.-++.++++........+.+.. +.....|..++.++.-.|++..|..++++..+.
T Consensus 95 iKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88777777654 4456666665555556666666666666555541 224456667777777777777777777776654
Q ss_pred C-CCCChhhHHHHHHH------HhccCCHHHHHHHHHHHHHCCCCCChhH-HHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 038401 189 N-CPLDLTTCNIMIDV------YGQLDMAKDADRLFWSMRKMGIDPSVVS-YNTLLRVYGEAELFGEAIHLFRLMQRKEI 260 (542)
Q Consensus 189 ~-~~~~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 260 (542)
. -.|+...+.-.... ....|..+.|.+.+..-... ..|... -..-...+.+.+++++|..++..+...
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-- 248 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-- 248 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--
Confidence 3 23455444433222 23445555555554443322 112221 223334556667777777777776665
Q ss_pred CCcHHHHHHHHHHHH-ccCCHHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038401 261 EQNVVTYNTMIKIYG-KSLEHEKAT-NLMQEMQNRGIEPNAITYSTI-IAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLY 337 (542)
Q Consensus 261 ~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 337 (542)
.||...|...+..+. +-.+.-++. .+|....+. .|....-..+ +.......-.+....++..+.+.|+++- +
T Consensus 249 nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f 323 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---F 323 (700)
T ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---h
Confidence 345444444433332 222223333 444444333 2222111111 1111112223334445555556655432 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHH--HHHHHHhcCC
Q 038401 338 QTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGC--MIELFSRNKK 415 (542)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~ 415 (542)
..+...|-.-. ..- +++++. ..|...-.........+.- .-.+|....|.. ++..+-..|+
T Consensus 324 ~dl~SLyk~p~---k~~-~le~Lv-----------t~y~~~L~~~~~f~~~D~~--~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 324 KDLRSLYKDPE---KVA-FLEKLV-----------TSYQHSLSGTGMFNFLDDG--KQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred hhhHHHHhchh---HhH-HHHHHH-----------HHHHhhcccccCCCccccc--ccCCchHHHHHHHHHHHHHHHccc
Confidence 22322221111 111 222211 0000000000000000000 001344444443 4455666777
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHH
Q 038401 416 YANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLF 493 (542)
Q Consensus 416 ~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~ 493 (542)
++.|..+++.+.. ..|+. ..|..-.+.+...|+.++|..++.++.+.+ .+|..... .+.-..+++..++|.++.
T Consensus 387 ~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 387 YEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHccccHHHHHHH
Confidence 7777777777766 33554 445555566777777777777777777765 34444333 666667777777777777
Q ss_pred HHHhcCCCCC-c-----hhHHHHH--HHHHHhhcchhhHHHHHHHH
Q 038401 494 ERLDSDSNIN-K-----KELHHVV--AGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 494 ~~~~~~~~~~-~-----~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 531 (542)
.+....+... + ...|+.+ +..|.+.|++-+|++-|..+
T Consensus 463 skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 463 SKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 7765443210 0 1334333 44667777776666655443
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=2.7e-11 Score=114.81 Aligned_cols=251 Identities=14% Similarity=0.158 Sum_probs=166.1
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 038401 40 GLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSG 119 (542)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 119 (542)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35566788899999999999999999999999998 9999988888888899999999999988887765
Q ss_pred CCccHhHHHHHHHHHhccCcHHH---HHHHHHHHH----HcCCCCCHH--------------HHHHHHHHHHHCCChHHH
Q 038401 120 IVPDLVAYNTMINVFGKAKLFKE---ARLLIEEMR----EQGVKPDTV--------------SYSTLLNLYVENHKFVEA 178 (542)
Q Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~g~~~~~~--------------~~~~l~~~~~~~g~~~~a 178 (542)
.|.+.+|..|..+|...||... ..+.+.... ..|+-.... .-...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999655 333222222 122111110 011223333445556666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 038401 179 LSVFAEMNEVNCPLDLTTCNIMIDVYGQL-DMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQR 257 (542)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 257 (542)
++++..+....-. .+. ..+++-+... ..+++...+...... .|++.++..++.+-...|+.+.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~-~p~--~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-APF--QVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCccccc-chH--HHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 6666554322100 111 1123333332 233444444433332 47777777777777777888888888888887
Q ss_pred cCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038401 258 KEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGK 311 (542)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 311 (542)
.|++.+..-|-.|+-+ .++..-+..++.-|.+.|+.|++.|+...+..+..
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 7777777666666655 66677777777777777777777777665555444
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.53 E-value=3.9e-09 Score=99.23 Aligned_cols=402 Identities=11% Similarity=0.035 Sum_probs=249.4
Q ss_pred CCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCC-Chhh
Q 038401 118 SGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPL-DLTT 196 (542)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~ 196 (542)
..+.-+...|..|.-++...|+++.+.+.|++....- --..+.|..+...|...|.-..|..+++........| +...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3345577888888888888899999988888876542 2356778888888888888888888888765543223 3333
Q ss_pred HHHHHHHHh-ccCCHHHHHHHHHHHHHC--CC--CCChhHHHHHHHHHHhc-----------CcHHHHHHHHHHHHhcCC
Q 038401 197 CNIMIDVYG-QLDMAKDADRLFWSMRKM--GI--DPSVVSYNTLLRVYGEA-----------ELFGEAIHLFRLMQRKEI 260 (542)
Q Consensus 197 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~ 260 (542)
+...-..|. +.+..+++.+.-.++... +. ...+..+-.+.-+|... ....++++.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333334443 446666666666665541 10 12233333333333211 124566777777776642
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038401 261 EQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTM 340 (542)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (542)
. |......+.--|+..++.+.|....++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+.- ..+......-
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 2 3333344455567778889999988888877556677888888888888889999998888776541 1111111111
Q ss_pred HHHHHHcCCHHHHHHHHHHhcC----------------------------C----CCCCHHHHHHHHHHhC---CHHHHH
Q 038401 341 IVAYERVGLVAHAKRLLHELRQ----------------------------P----NTIPRETAITILARAG---RIEEAT 385 (542)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~----------------------------~----~~~~~~~l~~~~~~~g---~~~~A~ 385 (542)
+..-..-++.+++......+.. . .+.+...+.......+ .++..
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 1111223344433332222210 0 0011111111111000 00000
Q ss_pred HHHHHHHHcCCCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHH
Q 038401 386 WVFRQAFDAGEVKD------ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLY 458 (542)
Q Consensus 386 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 458 (542)
+...... ..|+ ...|......+...++.++|...+.++.. +.| ....|...+..+...|++++|.+.|
T Consensus 633 --Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 633 --LPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred --cCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0000000 1122 34566677788899999999988888876 445 4566777778888999999999999
Q ss_pred HHHHHcCCCCchHHHH-H-HHHHHhccCChHHHHH--HHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 459 SEMQEEGCVFSDQVHF-Q-MLSLYGARKDFNMLES--LFER-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 459 ~~~~~~~~~~~~~~~~-~-l~~~~~~~g~~~~A~~--~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
..+...+ |+.+.. . ++.++.+.|+..-|.. ++.. ++.+|. +.++|+.++.++...|+.++|.+.|.....
T Consensus 708 ~~Al~ld---P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~--n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 708 LVALALD---PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL--NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHhcC---CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9999977 444333 3 8999999998777776 7777 455554 678999999999999999999999998654
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.5e-09 Score=93.08 Aligned_cols=303 Identities=10% Similarity=0.049 Sum_probs=214.3
Q ss_pred CCChhHHHHHHHHH--HhcCcHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-H
Q 038401 226 DPSVVSYNTLLRVY--GEAELFGEAIHLFRLMQRK-EIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAI-T 301 (542)
Q Consensus 226 ~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~ 301 (542)
+|...+....+.++ +-.++...+...+-.+... -++.|+.....+.+.+...|+.++|...|++.... .|+.. .
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 44444444444443 3345555555554444333 34567788888999999999999999999887754 33322 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHH---HHHHHHh
Q 038401 302 YSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETA---ITILARA 378 (542)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~ 378 (542)
.....-.+...|+.+....+...+.... .-+...|..-.......+++..|+.+-++.++.++.....+ ..++...
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence 2222334557888888888888776542 22334444444455667889999999888877555444443 4678889
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH-hccCcHHHHHH
Q 038401 379 GRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVL-NSY-GKLREFETADD 456 (542)
Q Consensus 379 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~ 456 (542)
|+.++|.-.|+.++... +.+...|..|+++|...|++.+|.-.-+...+. +..+..++..++ ..| ....--++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999999998752 357889999999999999999999887776652 334566766663 333 33445688999
Q ss_pred HHHHHHHcCCCCchHHHHH--HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhc
Q 038401 457 LYSEMQEEGCVFSDQVHFQ--MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 534 (542)
++++.++.+ |...... ++..+..-|.++.+++++++-..+.. +......|++++...+.+++|.+.|..+.+.
T Consensus 426 f~ek~L~~~---P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 426 FAEKSLKIN---PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhhccC---CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999876 5544333 78999999999999999999433322 3467889999999999999999999999887
Q ss_pred CCCC
Q 038401 535 RTFN 538 (542)
Q Consensus 535 ~~~~ 538 (542)
++..
T Consensus 501 dP~~ 504 (564)
T KOG1174|consen 501 DPKS 504 (564)
T ss_pred Cccc
Confidence 7543
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.47 E-value=8.3e-09 Score=97.53 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=39.4
Q ss_pred HHHHhccC-ChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHH
Q 038401 477 LSLYGARK-DFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNR 530 (542)
Q Consensus 477 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 530 (542)
+.-+.+.. -.++|.++++-+..... .....|..-.++|.+.|++-.|++.+++
T Consensus 463 GekL~~t~dPLe~A~kfl~pL~~~a~-~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 463 GEKLLKTEDPLEEAMKFLKPLLELAP-DNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhCc-cchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 33344444 57889999988754332 3557888999999999999999988765
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.3e-11 Score=103.54 Aligned_cols=231 Identities=12% Similarity=0.136 Sum_probs=124.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 038401 268 NTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERV 347 (542)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (542)
+.+.++|.+.|-+.+|.+.|+...+. .|-+.||..|-..|.+..++..|+.++.+-++. ++.+......+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea- 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA- 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH-
Confidence 44555666666666666666655554 445555666666666666666666666655554 12222222333334444
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038401 348 GLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMR 427 (542)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 427 (542)
.++.++|.++++...+.. +.++.....+...|.-.++++-|+.+|++++
T Consensus 303 ------------------------------m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 303 ------------------------------MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred ------------------------------HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 445555555555555542 2344444444455555566666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--CCchHHHHHHHHHHhccCChHHHHHHHHHH-hcCCCCCc
Q 038401 428 SAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGC--VFSDQVHFQMLSLYGARKDFNMLESLFERL-DSDSNINK 504 (542)
Q Consensus 428 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~ 504 (542)
+.|+ -+...|+.+.-+|.-.++++-++..|++++..-. .....++|.++.+....|++.-|.+.|+-. ..+++ .
T Consensus 352 qmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~--h 428 (478)
T KOG1129|consen 352 QMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ--H 428 (478)
T ss_pred HhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc--h
Confidence 6554 2445555555566666666666666666554321 111234444666666666666666666653 22222 4
Q ss_pred hhHHHHHHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 505 KELHHVVAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
.++++.|+-+-.+.|+.++|..++..+....+
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 45666666666666666666666666555443
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.46 E-value=4.7e-09 Score=98.69 Aligned_cols=403 Identities=11% Similarity=0.029 Sum_probs=260.9
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC-CHHH
Q 038401 83 DRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKP-DTVS 161 (542)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~ 161 (542)
..+.-+...|..+.-+....|+++.+.+.|++..... ......|..+...+...|.-..|..+++.-......| +...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3455688888888888999999999999999877532 3456778888888888999889999988876553234 3344
Q ss_pred HHHHHHHHH-HCCChHHHHHHHHHHHhc--C--CCCChhhHHHHHHHHhcc-----------CCHHHHHHHHHHHHHCCC
Q 038401 162 YSTLLNLYV-ENHKFVEALSVFAEMNEV--N--CPLDLTTCNIMIDVYGQL-----------DMAKDADRLFWSMRKMGI 225 (542)
Q Consensus 162 ~~~l~~~~~-~~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~ 225 (542)
+-..-..|. +.+..++++++-.++... + -...+..+..+.-+|... ....++.+.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d- 474 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD- 474 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-
Confidence 444444444 346677777776666551 1 112334444444444321 12345777788877665
Q ss_pred CCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Q 038401 226 DPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNR-GIEPNAITYST 304 (542)
Q Consensus 226 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ 304 (542)
+.|+.+.-.+.--|+..++++.|.+..++..+-+...+...|..+.-.+...+++.+|+.+.+...+. |. |......
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~ 552 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDG 552 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchh
Confidence 33444444455567778899999999999988866778899999999999999999999998876543 21 1111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----------------------------CCCCCHHHHHHHHHHHHHcC---CHHHH
Q 038401 305 IIAIWGKAGKLDRAAMLFQKLRSS----------------------------GVEIDPVLYQTMIVAYERVG---LVAHA 353 (542)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~---~~~~a 353 (542)
-+..-..-++.++++.....+... .......++..+.......+ ..+..
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 111112234444443332222110 01111222222222111111 01111
Q ss_pred HHHHHHhcCCCCC-C-------HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038401 354 KRLLHELRQPNTI-P-------RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEK 425 (542)
Q Consensus 354 ~~~~~~~~~~~~~-~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 425 (542)
+..+.. .+++. + |......+.+.++.++|...+.++... .+.....|...+..+...|...+|.+.|..
T Consensus 633 Lp~s~~--~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 LPSSTV--LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cCcccc--cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 000000 01111 1 233456678889999999888888775 345677888888889999999999999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHhccCcHHHHHH--HHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH
Q 038401 426 MRSAGYFPD-SHIIALVLNSYGKLREFETADD--LYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 426 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 496 (542)
.+. +.|+ ..+..+++.++.+.|+..-|.. ++..+++.+ |.++..|. ++.++-+.|+.++|.+.|...
T Consensus 710 Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 710 ALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 988 5575 4778899999999998877777 999999987 34444444 999999999999999999983
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=4.3e-11 Score=104.63 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 038401 335 VLYQTMIVAYERVGLVAHAKRLLHELRQPNT---IPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFS 411 (542)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 411 (542)
..+..+...+...|++++|...+++....++ ..+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 3344444444455555555555544433221 122334455666677777777777777653 345667788888889
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHH
Q 038401 412 RNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNML 489 (542)
Q Consensus 412 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A 489 (542)
..|++++|.+.++++.+....| ....+..+..++...|++++|...++++.+..+ .+...+. ++.++...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999988743222 345677788888999999999999999988762 2233333 88899999999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhc
Q 038401 490 ESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 534 (542)
...+++..... +.....+..++.++...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999854432 224456678889999999999999998887654
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=2.8e-10 Score=111.39 Aligned_cols=269 Identities=12% Similarity=-0.001 Sum_probs=184.5
Q ss_pred CCCHHhHHHHHHHHhc-----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH---------hcCCHHHHHHHHHHhH
Q 038401 51 APDRYTYSTLITCFGK-----EGMFDSAISWLQQMEQDRVSGDLVLYSNLIELAR---------KLSDYSKAISIFSRLK 116 (542)
Q Consensus 51 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 116 (542)
..+...|...+.+... .+++++|++.|++..+..+. +...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3466666666665322 24567899999998876432 4555655555443 2245889999999998
Q ss_pred hCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhh
Q 038401 117 SSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTT 196 (542)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 196 (542)
+.+ +.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|+..+++..+.+.. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 874 4467788888888889999999999999988874 335667888888999999999999999999887522 3333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Q 038401 197 CNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGK 276 (542)
Q Consensus 197 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (542)
+..++..+...|++++|...++++.....+.+...+..+..++...|+.++|...+..+.... +.+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 334444566688899999999988765422244556777788889999999999998876552 2344455666667777
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038401 277 SLEHEKATNLMQEMQNR-GIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSG 329 (542)
Q Consensus 277 ~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 329 (542)
.| ++|...++.+.+. ...|....+ +-..+.-.|+.+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4777777776543 112222223 33334456676666665 7777654
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=2.2e-11 Score=102.18 Aligned_cols=227 Identities=14% Similarity=0.102 Sum_probs=169.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHH
Q 038401 232 YNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITY-STIIAIWG 310 (542)
Q Consensus 232 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~ 310 (542)
-+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-++|.+..+++.|+.++.+-.+. .|-..|| ....+.+.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 467889999999999999999988876 577789999999999999999999999998876 5555554 55667778
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHH
Q 038401 311 KAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQ 390 (542)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (542)
..++.++|.++|+...+.. +.+.....++...| .-.++++-|+.++++
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~y-------------------------------fY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGY-------------------------------FYDNNPEMALRYYRR 349 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-Cccceeeeeeeecc-------------------------------ccCCChHHHHHHHHH
Confidence 8899999999999988764 33444433333333 344566666666777
Q ss_pred HHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC
Q 038401 391 AFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS--HIIALVLNSYGKLREFETADDLYSEMQEEGCVF 468 (542)
Q Consensus 391 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 468 (542)
+++.|. .++..|+.+.-+|...+++|-++.-|++.+..--.|+. ..|-.+.....-.|++.-|.+.|+-++..+ +
T Consensus 350 iLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~ 426 (478)
T KOG1129|consen 350 ILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--A 426 (478)
T ss_pred HHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--c
Confidence 777765 56777888888888888888888888888765444543 567677777777888888888888888765 2
Q ss_pred chHHHHH-HHHHHhccCChHHHHHHHHHHh
Q 038401 469 SDQVHFQ-MLSLYGARKDFNMLESLFERLD 497 (542)
Q Consensus 469 ~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 497 (542)
.....+. ++-.-.+.|++++|..+++...
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 3333444 7777778888888888888754
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=8.1e-11 Score=115.12 Aligned_cols=245 Identities=11% Similarity=0.052 Sum_probs=143.5
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 038401 279 EHEKATNLMQEMQNRGIEPN-AITYSTIIAIWG---------KAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVG 348 (542)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (542)
+.++|...|++..+. .|+ ...|..+..++. ..+++++|...++++.+.+ +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 345677777776655 333 333433333322 2234677777777777664 335666666666777777
Q ss_pred CHHHHHHHHHHhcCCCCC---CHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038401 349 LVAHAKRLLHELRQPNTI---PRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEK 425 (542)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 425 (542)
++++|...+++....++. .+..+..++...|++++|...++++++..+. ++..+..++..+...|++++|+..+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777776654433 3444566677777888888888887775432 232333344445567778888888877
Q ss_pred HHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHhccCChHHHHHHHHHHhcCCCC
Q 038401 426 MRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ--MLSLYGARKDFNMLESLFERLDSDSNI 502 (542)
Q Consensus 426 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~ 502 (542)
+.+.. .| +...+..+..++...|+.++|...+.++.... |...... ++..|...| ++|...++++......
T Consensus 432 ~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 432 LRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE---ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc---chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 76532 24 33445666677777888888888887765543 3333222 556666666 4666666664332111
Q ss_pred CchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 503 NKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 503 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
.+ ........+|.-.|+.+.|..+ +++.+.+
T Consensus 506 ~~-~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 ID-NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hh-cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 11 1112245566666776666666 6665544
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=6.1e-08 Score=88.62 Aligned_cols=454 Identities=12% Similarity=0.074 Sum_probs=255.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 038401 21 AYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELAR 100 (542)
Q Consensus 21 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (542)
..-+=++.+...|++++|.+..+.++..+ +-+...+..=+-++.+.+.|++|+.+.+.-... ..+...+-.-..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 33345666778899999999999999876 446667777777889999999999665543211 111112122234456
Q ss_pred hcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCChHHHH
Q 038401 101 KLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKP-DTVSYSTLLNLYVENHKFVEAL 179 (542)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~ 179 (542)
+.+..++|...++-+. +.+..+...-...+.+.|++++|.++|+.+.+++.+- +...-..++.+- -.-.+.
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH
Confidence 8899999999988332 2234466666788899999999999999998875321 111111222111 111111
Q ss_pred HHHHHHHhcCCCCChhhHHH---HHHHHhccCCHHHHHHHHHHHHHCC-------CCCCh-------hHHHHHHHHHHhc
Q 038401 180 SVFAEMNEVNCPLDLTTCNI---MIDVYGQLDMAKDADRLFWSMRKMG-------IDPSV-------VSYNTLLRVYGEA 242 (542)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~ll~~~~~~ 242 (542)
+ +......| ..+|.. ....+...|++.+|+++++...+.+ -.-+. .+-..+...+...
T Consensus 163 -~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 163 -L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred -H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1 22222222 223333 3455678899999999998883221 01111 1123344566788
Q ss_pred CcHHHHHHHHHHHHhcCCCCcHHHHHHHHH---HHHccCCH-H-HHHHHHHHHHHcC-------C---CCCHHHH-HHHH
Q 038401 243 ELFGEAIHLFRLMQRKEIEQNVVTYNTMIK---IYGKSLEH-E-KATNLMQEMQNRG-------I---EPNAITY-STII 306 (542)
Q Consensus 243 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~-~-~a~~~~~~~~~~~-------~---~p~~~~~-~~l~ 306 (542)
|+..+|..+|....+.. .+|........+ ++....++ + .++..++...... + .-..... +.++
T Consensus 238 Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998875 334432222211 12111111 1 1222222111100 0 0001111 1222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHhcCCCCCC----HHHHHHHHHHhCC
Q 038401 307 AIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYE--RVGLVAHAKRLLHELRQPNTIP----RETAITILARAGR 380 (542)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~----~~~l~~~~~~~g~ 380 (542)
..+ .+..+.+.++-..+-. ..|. ..+..++..+. +...+.++..++.......+.. .-..+......|+
T Consensus 317 ~l~--tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 317 ALF--TNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHH--hhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 222 2233333333322211 1222 33344444332 2235777778877776544443 2334566778899
Q ss_pred HHHHHHHHH--------HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHH----HHHHHHHHh
Q 038401 381 IEEATWVFR--------QAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA--GYFPDSHI----IALVLNSYG 446 (542)
Q Consensus 381 ~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~----~~~l~~~~~ 446 (542)
++.|++++. .+.+.+. .+.+...+...+.+.++-+.|..++...+.. .-.+.... +..++..-.
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 999999998 5555433 3455566777788888878888888777642 11222222 222333335
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhcCCC
Q 038401 447 KLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDSDSN 501 (542)
Q Consensus 447 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~ 501 (542)
+.|.-++|...++++.+.+ +++..... ++.+|++. +.+.|..+-+.+...++
T Consensus 470 r~G~~~ea~s~leel~k~n--~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~~ 522 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFN--PNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLKG 522 (652)
T ss_pred hcCchHHHHHHHHHHHHhC--CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCccc
Confidence 6799999999999999876 34544444 77777655 47788888777654443
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8e-08 Score=83.96 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 038401 382 EEATWVFRQAFDAGEVKD-ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSE 460 (542)
Q Consensus 382 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (542)
++|.+++++.+.. .|+ ....+.+...+...|.+.+++.++++.+. ..||....+.++..+...+.+++|.+.|..
T Consensus 421 EKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 421 EKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5566666665553 233 34455556666666666666666666665 446666666666666666666666666666
Q ss_pred HHHcC
Q 038401 461 MQEEG 465 (542)
Q Consensus 461 ~~~~~ 465 (542)
+++.+
T Consensus 497 ALr~d 501 (564)
T KOG1174|consen 497 ALRQD 501 (564)
T ss_pred HHhcC
Confidence 66655
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=5.6e-10 Score=97.51 Aligned_cols=200 Identities=14% Similarity=0.075 Sum_probs=117.7
Q ss_pred HHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHH
Q 038401 54 RYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINV 133 (542)
Q Consensus 54 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (542)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455555666666666666666666665543 2234555556666666666666666666665543 3344455555666
Q ss_pred HhccCcHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHH
Q 038401 134 FGKAKLFKEARLLIEEMREQGV-KPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKD 212 (542)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (542)
+...|++++|.+.+++...... ......+..+...+...|++++|...+.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666654321 1123445556666666777777777776666543 2344556666666667777777
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 038401 213 ADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQR 257 (542)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 257 (542)
|...+++..... +.+...+..+...+...|+.+.|..+.+.+..
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777776666552 33445555566666666777777766665543
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=6e-10 Score=103.75 Aligned_cols=243 Identities=16% Similarity=0.219 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC--
Q 038401 265 VTYNTMIKIYGKSLEHEKATNLMQEMQNR-----G-IEPNAIT-YSTIIAIWGKAGKLDRAAMLFQKLRSS-----GV-- 330 (542)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-- 330 (542)
.+...+...|...|+++.|..+++...+. | ..|...+ ...+...|...+++++|..+|+++... |-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666655432 1 1222222 223556677788888888888877542 11
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHH
Q 038401 331 EIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKD-ISVFGCMIEL 409 (542)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 409 (542)
+--..+++.|..+|.+.|++++|...++. |++++++..-. ..|. ...++.++..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~------------------------Al~I~~~~~~~-~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCER------------------------ALEIYEKLLGA-SHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHH------------------------HHHHHHHhhcc-ChHHHHHHHHHHHHH
Confidence 11134555566667777777777776543 44444442211 1122 2345666777
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC----C-CCc--hHHHHH
Q 038401 410 FSRNKKYANVIEVFEKMRSA---GYFPD----SHIIALVLNSYGKLREFETADDLYSEMQEEG----C-VFS--DQVHFQ 475 (542)
Q Consensus 410 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~--~~~~~~ 475 (542)
+...+++++|..++++..+. -+.++ ..+++.+...|...|++++|.+++++++... + ..+ ....+.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 88888888888888877542 11222 2678888889999999999999998887642 1 112 122333
Q ss_pred HHHHHhccCChHHHHHHHHHHh---c--CCCC-CchhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 476 MLSLYGARKDFNMLESLFERLD---S--DSNI-NKKELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~---~--~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
++..|.+.+++++|..+|.+.. . .|+. .....|..|+.+|.+.|++++|.++...+.
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8888888888888888887721 1 1221 224678889999999999999999888754
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=4.9e-09 Score=99.06 Aligned_cols=304 Identities=13% Similarity=0.107 Sum_probs=171.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc-----
Q 038401 202 DVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGK----- 276 (542)
Q Consensus 202 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 276 (542)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ +.+..-|..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 4455667777777777654433 12223444555666677777777777777777664 2233333344443311
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 038401 277 SLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKL-DRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKR 355 (542)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (542)
..+.+....+++++... .|.......+.-.+.....+ ..+...+..+...|+|+ ++..+-..|.......-...
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 12455666666666554 34443333332222221122 23344455555555432 34444334432222222222
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038401 356 LLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVF--GCMIELFSRNKKYANVIEVFEKMRSAGYFP 433 (542)
Q Consensus 356 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 433 (542)
++..... .+...+.+.... .....+|....| .-+...|...|++++|++++++.++ ..|
T Consensus 165 l~~~~~~-----------~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htP 225 (517)
T PF12569_consen 165 LVEEYVN-----------SLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTP 225 (517)
T ss_pred HHHHHHH-----------hhcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCC
Confidence 2222110 000000000000 000123444334 4556677888999999999999988 447
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhcCCCCCch------
Q 038401 434 D-SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDSDSNINKK------ 505 (542)
Q Consensus 434 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------ 505 (542)
+ ...|..-++.+-+.|++++|.+.++.+...+ .-|.-... .+..+.++|++++|.+.+..+...+.....
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 5 5778888888899999999999999999876 22333333 788888999999999999987654421111
Q ss_pred hHH--HHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 506 ELH--HVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 506 ~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
..| ...+.+|.+.|++..|++.|..+.+
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 233 4467889999999999988877654
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=3.6e-10 Score=101.08 Aligned_cols=149 Identities=11% Similarity=0.003 Sum_probs=80.8
Q ss_pred ccCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 038401 276 KSLEHEKATNLMQEMQNRG-IEPN--AITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAH 352 (542)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (542)
..+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|+...+.. +.++..|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3455566666666666432 1222 2345556666667777777777777777654 3356666667667777777777
Q ss_pred HHHHHHHhcCCCCC---CHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038401 353 AKRLLHELRQPNTI---PRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMR 427 (542)
Q Consensus 353 a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 427 (542)
|...++...+.++. .+..+..++...|++++|.+.|++.++..+ .++. .......+...+++++|+..|++..
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P-~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP-NDPY-RALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHccCCHHHHHHHHHHHH
Confidence 76666665543322 233344445555666666666666655422 1221 1111112233455666666665443
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.9e-07 Score=85.56 Aligned_cols=444 Identities=13% Similarity=0.118 Sum_probs=259.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHH--HHHH--
Q 038401 58 STLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNT--MINV-- 133 (542)
Q Consensus 58 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~-- 133 (542)
-+=++.+...|++++|.+...+++..+ +-+...+..-+-+..+.+.+++|+.+.+.-.. ..+++. +=.+
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHH
Confidence 334556678899999999999999876 44667777777888899999999865544221 111111 2333
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH-hccCCHHH
Q 038401 134 FGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVY-GQLDMAKD 212 (542)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 212 (542)
..+.+..++|+..++-... .+..+...-...+.+.|++++|+++|+.+.+.+.+ + +...+.+- ...+....
T Consensus 89 ~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhh
Confidence 4478999999998883322 23446666677888999999999999999876533 2 21111111 00000011
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHH---HHHhcCcHHHHHHHHHHHHhc-------CCCCcH-------HHHHHHHHHHH
Q 038401 213 ADRLFWSMRKMGIDPSVVSYNTLLR---VYGEAELFGEAIHLFRLMQRK-------EIEQNV-------VTYNTMIKIYG 275 (542)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~ 275 (542)
+. .+......| ..+|..+.+ .+...|++.+|+++++...+. +-..+. ..-..+.-++.
T Consensus 161 ~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 161 VQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11 122222223 334444433 456789999999999988332 111111 11233455667
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHH--HHHHHHHHHHhcC-------C---CCCHHHH-H
Q 038401 276 KSLEHEKATNLMQEMQNRGIEPNAITY----STIIAIWGKAGKLD--RAAMLFQKLRSSG-------V---EIDPVLY-Q 338 (542)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~--~a~~~~~~~~~~~-------~---~~~~~~~-~ 338 (542)
..|+.++|..++....... .+|.... |.++. +....++- .++..++...... + ....... +
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999988875 4454322 23332 22222221 1222222221110 0 0011111 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCCCCCC-HHHHHHHH--HHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 038401 339 TMIVAYERVGLVAHAKRLLHELRQPNTIP-RETAITIL--ARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKK 415 (542)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 415 (542)
.++..| .+..+.+.++...+....+.. +..++..+ .+......|.+++...-+..+.....+.-.++......|+
T Consensus 314 ~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 314 ALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 222222 344556666655554433222 22232222 2333678888888888776444445666667777889999
Q ss_pred HHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC---C--CCchHHHHH-HHHHHh
Q 038401 416 YANVIEVFE--------KMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG---C--VFSDQVHFQ-MLSLYG 481 (542)
Q Consensus 416 ~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~--~~~~~~~~~-l~~~~~ 481 (542)
++.|++++. .+.+.+..| .+...+...+.+.++.+.|..++..++..- . .......+. .+..-.
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 999999999 555544444 455556667777776665666555554421 0 011112222 666677
Q ss_pred ccCChHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHhhcchhhHHHHHHH
Q 038401 482 ARKDFNMLESLFERLDS-DSNINKKELHHVVAGIYERANRLNDASRIMNR 530 (542)
Q Consensus 482 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 530 (542)
+.|+-++|..+++++-+ +|+ +......++.+|++. +.+.|..+-+.
T Consensus 470 r~G~~~ea~s~leel~k~n~~--d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPN--DTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 78999999999999754 555 567788888888766 66777776655
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=1.2e-09 Score=87.69 Aligned_cols=192 Identities=14% Similarity=0.121 Sum_probs=126.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCCCCCC---HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 038401 338 QTMIVAYERVGLVAHAKRLLHELRQPNTIP---RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNK 414 (542)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 414 (542)
..|.-.|...|+...|...+++..+.++.. +..+...|.+.|..+.|.+.|++++... +.+..+.|..+..+|.+|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 344455666666666666666665544433 3344556666777777777777777653 345667777777778888
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHH
Q 038401 415 KYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESL 492 (542)
Q Consensus 415 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~ 492 (542)
++++|...|++++....-| -+.+|..++.+..+.|+.+.|...|++.++.. +..+.... ++......|++-.|..+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHH
Confidence 8888888888877642222 23677777777778888888888888888776 22233333 77777788888888888
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 493 FERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
+++.....+ ...+.....+++--+.|+.+.|-++=....+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 887655444 3445555667777777777777666555544
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=4.4e-09 Score=98.09 Aligned_cols=126 Identities=20% Similarity=0.197 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC-----------
Q 038401 302 YSTIIAIWGKAGKLDRAAMLFQKLRSS---GVE----IDPVLYQTMIVAYERVGLVAHAKRLLHELRQP----------- 363 (542)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------- 363 (542)
++.+...+...++++.|..+++...+. -+. .-..+++.|...|...|++++|.++++++...
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 334444455555555555555544321 011 11345555666666666666666666554320
Q ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHc------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038401 364 NTIPRETAITILARAGRIEEATWVFRQAFDA------GEVKDISVFGCMIELFSRNKKYANVIEVFEKMR 427 (542)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 427 (542)
...+.+.+...|.+.+++.+|.++|.+.... +.+....+|..|+..|...|+++.|+++.+.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0122344455556666666666665554422 122235678888888888888888888887776
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=8.6e-12 Score=77.51 Aligned_cols=50 Identities=44% Similarity=0.760 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhc
Q 038401 17 PSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGK 66 (542)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 66 (542)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 77888888888888888888888888888888888888888888887764
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.31 E-value=7.4e-08 Score=90.33 Aligned_cols=218 Identities=18% Similarity=0.209 Sum_probs=134.7
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038401 274 YGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHA 353 (542)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (542)
+...|+++.|+..|-+.. .....+.+......|.+|+.+++.+.+.. .....|..+.+.|...|+++.|
T Consensus 716 l~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHH
Confidence 334455555555443322 11223444556677888888888777653 2344566677778888888888
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038401 354 KRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP 433 (542)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 433 (542)
.++|.+.. .+...+.+|.+.|+++.|.++-.+.. |+...+..|-+-..-+-.+|++.+|.++|-.+.. |
T Consensus 785 e~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p 853 (1636)
T KOG3616|consen 785 EELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----P 853 (1636)
T ss_pred HHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----c
Confidence 88876643 45566777888888888877766652 2333455566666667778888888877755433 5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038401 434 DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAG 513 (542)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 513 (542)
+. .+.+|-+.|..++.+++..+-.-.. -...+..++.-|...|+..+|...|-+.. -|-..++
T Consensus 854 ~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavn 916 (1636)
T KOG3616|consen 854 DK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVN 916 (1636)
T ss_pred hH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHH
Confidence 53 3456777787777777666543211 12223336777777888888777665432 2444556
Q ss_pred HHHhhcchhhHHHHHHH
Q 038401 514 IYERANRLNDASRIMNR 530 (542)
Q Consensus 514 ~~~~~g~~~~A~~~~~~ 530 (542)
.|-..+.|++|.++.+.
T Consensus 917 myk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 917 MYKASELWEDAYRIAKT 933 (1636)
T ss_pred HhhhhhhHHHHHHHHhc
Confidence 67677777777666543
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1e-08 Score=85.43 Aligned_cols=197 Identities=17% Similarity=0.149 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHH-HHHH
Q 038401 20 FAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSN-LIEL 98 (542)
Q Consensus 20 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 98 (542)
.-+++++..+.+..++++|++++..-.++..+ +....+.+..+|....++..|...|+++-... |...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 34677888889999999999999988887533 77788889999999999999999999997753 33333332 3455
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHH--HHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChH
Q 038401 99 ARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMIN--VFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFV 176 (542)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 176 (542)
+.+.+.+..|+.+...|... |+...-..-+. .....+++..+..++++....| +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 66788899999998888653 33222222222 2345788888999988887543 4555555556667899999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 038401 177 EALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGID 226 (542)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 226 (542)
.|.+-|+...+-+--.....|+..+.. .+.++++.|.+...++.+.|++
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 999999998876433456677766644 4678899999999998887754
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=1e-08 Score=82.40 Aligned_cols=192 Identities=13% Similarity=0.085 Sum_probs=88.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 038401 268 NTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERV 347 (542)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (542)
..|.-.|.+.|+...|..-+++.+++. +.+..+|..+...|.+.|..+.|.+.|+...+.. +.+..+.|.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 344455556666666666666655552 2233445555555556666666666666655543 22444455555555555
Q ss_pred CCHHHHHHHHHHhcC-C----CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038401 348 GLVAHAKRLLHELRQ-P----NTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEV 422 (542)
Q Consensus 348 ~~~~~a~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 422 (542)
|.+++|...|+.... | ...++..+.-+..+.|+++.|...|++.++... ..+.+...+.......|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHH
Confidence 555555555554432 1 122233333333444444444444444444321 2233333444444444444444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038401 423 FEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQE 463 (542)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 463 (542)
++.....+. ++..++...++.--..|+.+.+.++=.++.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444443322 4444444444444444444444444333333
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.27 E-value=4.1e-08 Score=95.04 Aligned_cols=471 Identities=12% Similarity=0.042 Sum_probs=236.9
Q ss_pred CCCcH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHHhH
Q 038401 15 YSPSV-FAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRV-SGDLVLY 92 (542)
Q Consensus 15 ~~~~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ 92 (542)
+.|+. ..|..|...|..-.+..+|.+.|+..-+.+.. +...+......|++..+++.|..+.-..-+... ..-..-|
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW 565 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENW 565 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhh
Confidence 44443 36777777777777777788888777776432 666777777788888888877776333322210 0111223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHH
Q 038401 93 SNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYST--LLNLYV 170 (542)
Q Consensus 93 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--l~~~~~ 170 (542)
....-.|...++...+..-|+...... +.|...|..+..+|.+.|++..|.++|.+.... .|+ .+|.. ....-+
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMEC 641 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHH
Confidence 334445667777777777777776654 446777777777777777777777777776654 222 22222 222345
Q ss_pred HCCChHHHHHHHHHHHhcC------CCCChhhHHHHHHHHhccCCHHH-------HHHHHHHHHHCCCCCChhHHHHHHH
Q 038401 171 ENHKFVEALSVFAEMNEVN------CPLDLTTCNIMIDVYGQLDMAKD-------ADRLFWSMRKMGIDPSVVSYNTLLR 237 (542)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~~~~~~~~~~~ll~ 237 (542)
..|.+.+++..+..+.... ..--..++..+...+...|-... +.+.|.-...+....+...|-.+-.
T Consensus 642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd 721 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD 721 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Confidence 5677777777666654311 00011122222222222222222 2222222211111111111111111
Q ss_pred H-----------------------HHhcCcH---H---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHc----cC----CH
Q 038401 238 V-----------------------YGEAELF---G---EAIHLFRLMQRKEIEQNVVTYNTMIKIYGK----SL----EH 280 (542)
Q Consensus 238 ~-----------------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~ 280 (542)
+ .-..+.. + -+.+.+-.-.+ ...+..+|..+...|.+ .+ +.
T Consensus 722 ac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 722 ACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 1 1111111 0 00111100000 11123344444433322 11 22
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 038401 281 EKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHEL 360 (542)
Q Consensus 281 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (542)
..|+..+.+..+.. .-+..+|+.|.-. ...|++.-+...|-...-.. +....+|..+...+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 35666666655432 2355566665544 55566766666666555442 345666777777777788888888888777
Q ss_pred cCCCCC---CHHHHHHHHHHhCCHHHHHHHHHHHH----HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 038401 361 RQPNTI---PRETAITILARAGRIEEATWVFRQAF----DAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA---- 429 (542)
Q Consensus 361 ~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 429 (542)
..-+|. +|-.........|+.-++..+|...- ..|..++...|-........+|+.++-+...+++...
T Consensus 877 qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 877 QSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 654333 33333334455677777777776622 2223344444444444445566655544433333211
Q ss_pred -----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc---CC-CCchHHHHH-HHHHHhccCChHHHHHHHHH
Q 038401 430 -----GYFPDSHIIALVLNSYGKLREFETADDLYSEMQEE---GC-VFSDQVHFQ-MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 430 -----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 495 (542)
+.+.+...|...+....+.+.+++|.....+.+.. .. ....++.-. ++.++...|.++.|...+..
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~ 1032 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWK 1032 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcc
Confidence 22223456666666666777777777766665432 10 111121222 56666777777766655554
No 86
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.6e-11 Score=76.26 Aligned_cols=48 Identities=46% Similarity=0.784 Sum_probs=21.8
Q ss_pred ccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038401 122 PDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLY 169 (542)
Q Consensus 122 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 169 (542)
||..+|+++|.+|++.|++++|.++|++|.+.|++||..||+.++++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.3e-06 Score=83.30 Aligned_cols=471 Identities=15% Similarity=0.167 Sum_probs=223.4
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-C--------CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 038401 18 SVFAYNVVLRNVLRAKQWELAHGLFDEMRQR-G--------IAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGD 88 (542)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 88 (542)
+-..|..+.+.|.+..+.+-|.-.+-.|... | -.|+ ..=..........|..++|..+|.+-.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 4455666666666666666555554444321 1 0111 1111111222345666666666665543
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHH----------HcC----
Q 038401 89 LVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMR----------EQG---- 154 (542)
Q Consensus 89 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~g---- 154 (542)
|..|-..|...|.+++|.++-+.--... -..||......+-..++.+.|++.|++.. ...
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 2233445556666666666544322111 12344444444445566666666655321 110
Q ss_pred -----CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh
Q 038401 155 -----VKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSV 229 (542)
Q Consensus 155 -----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 229 (542)
-..|...|.......-..|+.+.|+.+|....+ |-.+++..|-.|+.++|-++-++ .-|.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccH
Confidence 011233334444444445666666666655433 44455556666666666665543 2355
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc-------------cC--CHHHHHHHHHHHHHcC
Q 038401 230 VSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGK-------------SL--EHEKATNLMQEMQNRG 294 (542)
Q Consensus 230 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~--~~~~a~~~~~~~~~~~ 294 (542)
.....+.+.|-..|++.+|..+|..... |...|+.|-. .| +.-.|-++|++. |
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g 1035 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---G 1035 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---c
Confidence 5666777888888888888887766543 2222222211 11 111222233221 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HH--hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC--
Q 038401 295 IEPNAITYSTIIAIWGKAGKLDRAAMLFQK--------LR--SSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ-- 362 (542)
Q Consensus 295 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 362 (542)
. -+...+..|.+.|.+.+|+++--. ++ +.....|+...+.-.+.++...++++|..++-..+.
T Consensus 1036 ~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~ 1110 (1416)
T KOG3617|consen 1036 G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFS 1110 (1416)
T ss_pred h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 0 112233445566666666554211 11 122234566666666666666666666655533220
Q ss_pred ------------------------CCCC--------CHHHHHHHHHHhCCHHHHHHHHHHHH----------HcCCCc--
Q 038401 363 ------------------------PNTI--------PRETAITILARAGRIEEATWVFRQAF----------DAGEVK-- 398 (542)
Q Consensus 363 ------------------------~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~~-- 398 (542)
.+.. ....+...|.++|.+..|-+-|.++= +.|...
T Consensus 1111 ~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI 1190 (1416)
T KOG3617|consen 1111 GALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKI 1190 (1416)
T ss_pred HHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceE
Confidence 1111 12345667777888777766665542 111100
Q ss_pred --------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh---------------ccCcHHHHH
Q 038401 399 --------DISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYG---------------KLREFETAD 455 (542)
Q Consensus 399 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---------------~~g~~~~A~ 455 (542)
...+| .+..-|.+.-+|+.--++++.+.. +-.....+..|.+-|. ..|-.++|.
T Consensus 1191 ~FFAn~sRqkEiY-ImAANyLQtlDWq~~pq~mK~I~t--FYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~ 1267 (1416)
T KOG3617|consen 1191 RFFANTSRQKEIY-IMAANYLQTLDWQDNPQTMKDIET--FYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAA 1267 (1416)
T ss_pred EEEeeccccceee-eehhhhhhhcccccChHHHhhhHh--hhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHH
Confidence 00011 111122222222222222222221 1111112222222221 124556677
Q ss_pred HHHHHHHHcCCCCchH----HHHHHHHHHhc-----cCChHHHHHHHHHHhcCCCCC----chhHHHHHHHHHHhhcchh
Q 038401 456 DLYSEMQEEGCVFSDQ----VHFQMLSLYGA-----RKDFNMLESLFERLDSDSNIN----KKELHHVVAGIYERANRLN 522 (542)
Q Consensus 456 ~~~~~~~~~~~~~~~~----~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~ 522 (542)
+.+.++..++....-. ..........+ ..+....+...+.+...|..+ ....|..++..|.+..+|.
T Consensus 1268 kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~ 1347 (1416)
T KOG3617|consen 1268 KCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYK 1347 (1416)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhcc
Confidence 7777776554111100 00011111111 224555555555555555433 2467888999999999999
Q ss_pred hHHHHHHHHHhcCC
Q 038401 523 DASRIMNRMNKRRT 536 (542)
Q Consensus 523 ~A~~~~~~~~~~~~ 536 (542)
.|.+.+++|+++-+
T Consensus 1348 ~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1348 PAYRALTELQKKVP 1361 (1416)
T ss_pred HHHHHHHHHhhcCC
Confidence 99999999998753
No 88
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.26 E-value=2e-06 Score=82.90 Aligned_cols=511 Identities=13% Similarity=0.096 Sum_probs=276.0
Q ss_pred hhhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038401 2 SVAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQME 81 (542)
Q Consensus 2 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 81 (542)
|++-.+.+.++++-.+....+..+. +.|.|..++|..+++.....+.. |..|...+-.+|...++.++|..+|++..
T Consensus 28 al~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~ 104 (932)
T KOG2053|consen 28 ALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERAN 104 (932)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5666677777654333333343333 56889999999988888776554 77889999999999999999999999998
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccC----------cHHHHHHHHHHHH
Q 038401 82 QDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAK----------LFKEARLLIEEMR 151 (542)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~ 151 (542)
+. .|+......++.+|.+.+++.+-.+.--++-+. .+.++..+=++++.....- -..-|.+.++.+.
T Consensus 105 ~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l 181 (932)
T KOG2053|consen 105 QK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL 181 (932)
T ss_pred hh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence 76 456777788888899888877655554444432 2334444444444443221 1335666777776
Q ss_pred HcC-CCCCHHHHHHHHHHHHHCCChHHHHHHH-HHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh
Q 038401 152 EQG-VKPDTVSYSTLLNLYVENHKFVEALSVF-AEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSV 229 (542)
Q Consensus 152 ~~g-~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 229 (542)
+.+ .--+..-...-...+...|++++|.+++ ....+.-.+.+...-+.-+..+...+++.+..++..++...| +|.
T Consensus 182 ~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd 259 (932)
T KOG2053|consen 182 EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD 259 (932)
T ss_pred ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc
Confidence 653 1112222222233455688899999998 344444444455555677788888899999999999998876 332
Q ss_pred hHHHHHHHHH----------------HhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038401 230 VSYNTLLRVY----------------GEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNR 293 (542)
Q Consensus 230 ~~~~~ll~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (542)
|...+..+ ...+..+...+...+..........-++-.+..-+-.-|+.+++...|-+- -
T Consensus 260 --y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--f 335 (932)
T KOG2053|consen 260 --YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--F 335 (932)
T ss_pred --hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--h
Confidence 22222211 111222333333332222211111111222222223457777655444221 1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHHcCC-----HHHHHHHHHH--
Q 038401 294 GIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPV-------LYQTMIVAYERVGL-----VAHAKRLLHE-- 359 (542)
Q Consensus 294 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~a~~~~~~-- 359 (542)
|-.| .+..=+..|...=..+.-..++....... ++.. .+...+..-...|. -+.-..++.+
T Consensus 336 g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~ 410 (932)
T KOG2053|consen 336 GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLK 410 (932)
T ss_pred CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 2122 11111112222222222233333332211 1100 01111111111221 1111111111
Q ss_pred --hcCC---------CCC---------CHHHHHHHHHHhCCHH---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 038401 360 --LRQP---------NTI---------PRETAITILARAGRIE---EATWVFRQAFDAGEVKDISVFGCMIELFSRNKKY 416 (542)
Q Consensus 360 --~~~~---------~~~---------~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 416 (542)
...+ ... ..+.++..+.+.++.. +|+-+++...... +.|..+--.+++.|+-.|-+
T Consensus 411 ~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~ 489 (932)
T KOG2053|consen 411 LTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAF 489 (932)
T ss_pred HHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCC
Confidence 1111 000 1233456666666654 4666666666542 34566666788888888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHH-
Q 038401 417 ANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFER- 495 (542)
Q Consensus 417 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~- 495 (542)
..|.++|+.+--..+.-|...+. +..-+.-.|++..+...++...+... .....+..++....+.|.+.+..++..-
T Consensus 490 p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~-~~~kE~~eyI~~AYr~g~ySkI~em~~fr 567 (932)
T KOG2053|consen 490 PDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYD-SSLKETPEYIALAYRRGAYSKIPEMLAFR 567 (932)
T ss_pred hhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHh-hhhhhhHHHHHHHHHcCchhhhHHHHHHH
Confidence 99999998886555655554443 33455677888888888888877541 1222233355555577777776654432
Q ss_pred --HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 496 --LDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 496 --~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
+.......-...-+...+..+..++.++=...++.|.
T Consensus 568 ~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 568 DRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 3321111111233445566677778777777777765
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=8.3e-08 Score=86.89 Aligned_cols=404 Identities=14% Similarity=0.105 Sum_probs=215.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCC
Q 038401 96 IELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPD-TVSYSTLLNLYVENHK 174 (542)
Q Consensus 96 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~ 174 (542)
..+....|+++.|..+|...+... +++...|+.-..+|+..|++++|++=-.+-++. .|+ ...|+....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 356678899999999999998875 568888999999999999999998877777765 565 4678888889999999
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHH-----HHHHhcCcHHHHH
Q 038401 175 FVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLL-----RVYGEAELFGEAI 249 (542)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~~a~ 249 (542)
+++|+..|.+-++.. +.|...++.+..++. -+.. +.+.| .++..|..+. +.+.....+..-+
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~--~~~~-~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYL--EDYA-ADQLF---------TKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhh--HHHH-hhhhc---------cCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 999999999988864 456777777777761 1111 11111 1111111111 1111111111111
Q ss_pred HHHHHHHhc-CCCCcHHHHHHHHHHHHccC-------------------CHH----HHHHHHHHHHH-cCCCCCHHHHHH
Q 038401 250 HLFRLMQRK-EIEQNVVTYNTMIKIYGKSL-------------------EHE----KATNLMQEMQN-RGIEPNAITYST 304 (542)
Q Consensus 250 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-------------------~~~----~a~~~~~~~~~-~~~~p~~~~~~~ 304 (542)
+.+..-... +...+ ...++.+..... .+. .......++.+ ....--..-...
T Consensus 153 ~~~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHhhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 111000000 00000 000111100000 000 00000000000 000001122345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCH---H-------HHHHH
Q 038401 305 IIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPR---E-------TAITI 374 (542)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~-------~l~~~ 374 (542)
+.++..+..+++.+.+-+....+.. -+...++....+|...|.+.+.........+.+...+ + .+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 5666666677777777777776654 3444445555566666666655555444333222111 1 12334
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHH
Q 038401 375 LARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFET 453 (542)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 453 (542)
+.+.++++.|+..|.+.+.....|+. ..+....++++...+...- +.|.. .-...-+..+.+.|++..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 55667777777777777664333322 1122333444444444333 22432 112223556666677777
Q ss_pred HHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHH
Q 038401 454 ADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 454 A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 531 (542)
|...|.+++..+ |.+...|. .+.+|.+.|.+..|.+=.++ +..+|. -...|..-+.++....+|++|.+.|.+.
T Consensus 377 Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~--~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 377 AVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN--FIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776665 34445555 66667777777777666665 344443 3456666666666666777777777666
Q ss_pred HhcC
Q 038401 532 NKRR 535 (542)
Q Consensus 532 ~~~~ 535 (542)
++..
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 6544
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.1e-07 Score=82.57 Aligned_cols=443 Identities=13% Similarity=0.079 Sum_probs=254.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCH
Q 038401 27 RNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGD-LVLYSNLIELARKLSDY 105 (542)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 105 (542)
.+....|+++.|+..|.+.+...+. |...|+.-..+|+..|++++|++=-.+-.+. .|+ +.-|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4556789999999999999887644 8888999999999999999998877766664 444 45788888999999999
Q ss_pred HHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcH---HHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHC-------
Q 038401 106 SKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLF---KEARLLIEEMREQ---GVKPDTVSYSTLLNLYVEN------- 172 (542)
Q Consensus 106 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~------- 172 (542)
++|+..|.+-++.. +.+...++.+..++...... -.--.++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988763 44566677777766111000 0000011111110 0000111222222221110
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHh-ccCCHH----HHHHHHHHHHHC-CCCCChhHHHHHHHHHHhcCcHH
Q 038401 173 HKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYG-QLDMAK----DADRLFWSMRKM-GIDPSVVSYNTLLRVYGEAELFG 246 (542)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~----~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~ 246 (542)
.+.+......-.+...+.. .+...-.... ....+. ............ ....-..-...+.++..+..+++
T Consensus 166 l~d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred cccHHHHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 0001111111111000000 0000000000 000000 000000000000 00001122445667777788888
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHhcCCHHHHH
Q 038401 247 EAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITY-------STIIAIWGKAGKLDRAA 319 (542)
Q Consensus 247 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-------~~l~~~~~~~~~~~~a~ 319 (542)
.|.+.+....... .+..-++....+|...|....+.....+..+.|.. ...-| ..+..++.+.++++.++
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 9998888887764 45666677778888888888777777766655422 11222 22334566678888899
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCC---HHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 038401 320 MLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIP---RETAITILARAGRIEEATWVFRQAFDAGE 396 (542)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 396 (542)
..|.+.+.....|+. ..+....+++....+...-.++.. ...-...+.+.|++..|+..|.++++..
T Consensus 319 ~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~- 388 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD- 388 (539)
T ss_pred HHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-
Confidence 888887765433332 222334444444444332222221 1112556778899999999999999885
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH
Q 038401 397 VKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ 475 (542)
Q Consensus 397 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 475 (542)
+.|...|....-+|.+.|.+..|+.-.+...+. .|+. ..|..=+.++....+|++|.+.|++.++.+ |+..-+.
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d---p~~~e~~ 463 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD---PSNAEAI 463 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---chhHHHH
Confidence 578889999999999999999999998888884 4543 455555666777788999999999999876 5444333
Q ss_pred --HHHHHhccCChHHHHHHHHH
Q 038401 476 --MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 476 --l~~~~~~~g~~~~A~~~~~~ 495 (542)
+..+...........++.++
T Consensus 464 ~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 464 DGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHhhcCCCHHHHHHh
Confidence 44444432222333344444
No 91
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.6e-06 Score=84.57 Aligned_cols=125 Identities=12% Similarity=0.080 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHH-----HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 038401 22 YNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYST-----LITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLI 96 (542)
Q Consensus 22 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 96 (542)
+..+.+.|.+.|-+.+|++.+..+... + .....+. -+..|...-.++.+.+.++.|...++..+..+...+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 667788888888888888777665432 0 0111111 1123344456788888888888887777777777666
Q ss_pred HHHHhcCCHHHHHHHHHHhHhC-----------CCCccHhHHHHHHHHHhccCcHHHHHHHHHH
Q 038401 97 ELARKLSDYSKAISIFSRLKSS-----------GIVPDLVAYNTMINVFGKAKLFKEARLLIEE 149 (542)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 149 (542)
.-|...-..+..+++|+....- ++..|+...-..|.+.++.|++.+.+++.++
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 6666666666777777765432 2345666666778888899988888877653
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.22 E-value=4e-07 Score=85.63 Aligned_cols=265 Identities=20% Similarity=0.238 Sum_probs=151.1
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 038401 236 LRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKL 315 (542)
Q Consensus 236 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 315 (542)
+.+......+.+|+.+++.+..+. .-..-|..+.+.|+..|+++.|.++|.+.- .++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 444556677777777777776653 233446667777888888888877775432 244556777788888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 038401 316 DRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAG 395 (542)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (542)
+.|.++-.+... .......|.+-..-+...|++.+|.+++-.+..|+ ..+.+|-+.|..+..+++..+--..
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~-----~aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD-----KAIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCch-----HHHHHHHhhCcchHHHHHHHHhChh-
Confidence 887777655432 23344555555555667777777777766554433 3466677777777776666553211
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCc-hHHHH
Q 038401 396 EVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFS-DQVHF 474 (542)
Q Consensus 396 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~ 474 (542)
.-..+-..+..-|-..|+...|..-|-+..+ |.+.+++|...+.|++|.++-+ ..|+... ..+.+
T Consensus 880 --~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~f 945 (1636)
T KOG3616|consen 880 --HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAF 945 (1636)
T ss_pred --hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHH
Confidence 1123344555666677777777776654432 3344556666666666655432 2221100 11111
Q ss_pred H---------HHHHHhc-------------cCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 475 Q---------MLSLYGA-------------RKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 475 ~---------l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
. .+..+-+ .+-++-|.++-+-..++. ..+....++..+...|++++|.+-|-+..
T Consensus 946 lwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 946 LWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 1 0112222 333333333333322111 23566677888888899999987777766
Q ss_pred hcCC
Q 038401 533 KRRT 536 (542)
Q Consensus 533 ~~~~ 536 (542)
+.++
T Consensus 1023 klnt 1026 (1636)
T KOG3616|consen 1023 KLNT 1026 (1636)
T ss_pred hccc
Confidence 5443
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=2.2e-07 Score=86.69 Aligned_cols=197 Identities=10% Similarity=0.050 Sum_probs=105.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCCC---CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-cC--HHHHHHHHHHHHh
Q 038401 339 TMIVAYERVGLVAHAKRLLHELRQPN---TIPRETAITILARAGRIEEATWVFRQAFDAGEV-KD--ISVFGCMIELFSR 412 (542)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~ 412 (542)
.+...+...|++++|...+++....+ ......+..++...|++++|...+++.++.... ++ ...|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 33444555555555555555544321 222333455556666666666666666654221 22 2345567777888
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHhccCcHHHHHHH--H-HHHHHcCCCCchHHH-HHHHHHHhccC
Q 038401 413 NKKYANVIEVFEKMRSAGY-FPDSHII-A--LVLNSYGKLREFETADDL--Y-SEMQEEGCVFSDQVH-FQMLSLYGARK 484 (542)
Q Consensus 413 ~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~~~~~~~~~~~~-~~l~~~~~~~g 484 (542)
.|++++|..+++++..... .+..... + .++.-+...|....+.++ + .........+..... ...+.++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 8888888888888764321 1111111 1 223333344433333332 1 111111000001111 12667788899
Q ss_pred ChHHHHHHHHHHhcCCCC---C-----chhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 485 DFNMLESLFERLDSDSNI---N-----KKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 485 ~~~~A~~~~~~~~~~~~~---~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
+.++|...++.+...... . ........+-++...|++++|.+.+.......
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999998886432211 0 12445566677889999999999998876543
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=3.1e-08 Score=88.69 Aligned_cols=30 Identities=3% Similarity=0.076 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSA 429 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 429 (542)
...|..++..+.+.|++++|+..|++.++.
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445666666777777777777777777663
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=2.9e-07 Score=76.98 Aligned_cols=295 Identities=14% Similarity=0.122 Sum_probs=203.2
Q ss_pred HHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHH-HHH
Q 038401 54 RYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNT-MIN 132 (542)
Q Consensus 54 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 132 (542)
..-+++.+..+.+..+++.|++++....++.+ .+......+..+|....++..|...++++-.. .|...-|.. -..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 33467777778888999999999998887743 27778888999999999999999999999875 565555543 245
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCH
Q 038401 133 VFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNL--YVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMA 210 (542)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (542)
.+.+.+.+..|+++...|... |....-..-+.+ ....+++..+..++++....| +..+.+.......+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 667789999999999988763 333222222222 235788999999988876543 455566666667899999
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-------------cHH--------HHHH
Q 038401 211 KDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQ-------------NVV--------TYNT 269 (542)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~ 269 (542)
+.|.+-|....+-+--.....|+..+ +..+.++++.|++...++..+|+.. |+. .-+.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 99999999988754333455566544 4567889999999999998876532 111 1122
Q ss_pred HH-------HHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038401 270 MI-------KIYGKSLEHEKATNLMQEMQNR-GIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMI 341 (542)
Q Consensus 270 l~-------~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (542)
++ ..+.+.++++.|.+.+.+|.-+ .-..|+.|...+.-.- ..+++....+-+.-+...+ +....||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence 33 3345678888888888777432 1234666655543322 2344555555555566554 34567888888
Q ss_pred HHHHHcCCHHHHHHHHHHh
Q 038401 342 VAYERVGLVAHAKRLLHEL 360 (542)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~ 360 (542)
-.|++..-++.|-.++.+-
T Consensus 318 llyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHhhhHHHhHHHHHHhhC
Confidence 8888888888888777653
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.17 E-value=8.2e-07 Score=86.43 Aligned_cols=176 Identities=10% Similarity=-0.051 Sum_probs=101.4
Q ss_pred HHHHHHHHhcC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 352 HAKRLLHELRQ---PNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRS 428 (542)
Q Consensus 352 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 428 (542)
.|+..+....+ .+...|+.+.-+ ...|++.-|...|-+.... .+....+|..+.-.+.+..+++-|...|.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 45555554432 344445444333 4446666666655555544 234556677777777777888888888887776
Q ss_pred CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHH--HHHcC-CCCchHHHHH-HHHHHhccCChHHHHHHHHHHhc-----
Q 038401 429 AGYFP-DSHIIALVLNSYGKLREFETADDLYSE--MQEEG-CVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDS----- 498 (542)
Q Consensus 429 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~-~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~----- 498 (542)
+.| |...|..........|+.-++..+|.. ....+ +..+.-..+. .......+|++++-+...+++..
T Consensus 879 --LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 879 --LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred --cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 445 445565555555667777777777776 22221 1122222222 33445556666655554444321
Q ss_pred ----CCCCCchhHHHHHHHHHHhhcchhhHHHHHHHH
Q 038401 499 ----DSNINKKELHHVVAGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 499 ----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 531 (542)
...+....+|...+....+.+.+.+|..+..+.
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 112224467888888888888888888877763
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=2e-06 Score=73.58 Aligned_cols=308 Identities=12% Similarity=0.048 Sum_probs=148.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHH-HHHH
Q 038401 127 YNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYST---LLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCN-IMID 202 (542)
Q Consensus 127 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 202 (542)
---+...+...|.+..|+.-|...++. |+..|.+ -...|...|+-..|+.-+....+. .||-..-. .-..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 334445555556666666666555543 2222322 234555566666666555555553 24432211 1123
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHH
Q 038401 203 VYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEK 282 (542)
Q Consensus 203 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 282 (542)
.+.+.|.+++|..-|+.+++.. |+..+- ..+..+.-..++- ......+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhh
Confidence 3455666666666666665542 211100 0000000000000 001111222333444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q 038401 283 ATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ 362 (542)
Q Consensus 283 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (542)
|+.....+++-. +.|...+..-..+|...|++..|+.=++...+.. ..+...+-.+-..+...|+.+.++...++..+
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 444444444431 2344444444444445555554444444443332 12333333334444444444444444444433
Q ss_pred CCCCCHH------H---------HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHH
Q 038401 363 PNTIPRE------T---------AITILARAGRIEEATWVFRQAFDAGEVKDIS---VFGCMIELFSRNKKYANVIEVFE 424 (542)
Q Consensus 363 ~~~~~~~------~---------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~ 424 (542)
-++..-. . .+......+++.++++..+..++..+..... .+..+-.++...|++.+|++...
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 2222110 0 0122345577777777777777654332222 23334455666778888888888
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 425 KMRSAGYFPD-SHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 425 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
++++ +.|| ..++.--..+|.-...+++|+.-|+.+.+.+
T Consensus 332 evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 332 EVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777 5565 5667667777777778888888888887765
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=8.6e-06 Score=79.69 Aligned_cols=416 Identities=13% Similarity=0.150 Sum_probs=211.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHH-HH---HHHHH------HhCCC----------
Q 038401 26 LRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSA-IS---WLQQM------EQDRV---------- 85 (542)
Q Consensus 26 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~---~~~~~------~~~~~---------- 85 (542)
+.-.-+.++..--...++...+.|.. ++.+++++...|...++-.+- ++ .|+.. .++++
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerG 923 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERG 923 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeeccc
Confidence 33344566677777788888888876 888999998888765543321 11 11111 11110
Q ss_pred ---------CCCHHhHHHHHHHHHhcCCHHHHH-----------HHHHHhHhCCCC--ccHhHHHHHHHHHhccCcHHHH
Q 038401 86 ---------SGDLVLYSNLIELARKLSDYSKAI-----------SIFSRLKSSGIV--PDLVAYNTMINVFGKAKLFKEA 143 (542)
Q Consensus 86 ---------~~~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 143 (542)
......|....+.+....|.+.=. ++.++..+.+++ .|+...+..+.++...+-..+-
T Consensus 924 qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eL 1003 (1666)
T KOG0985|consen 924 QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNEL 1003 (1666)
T ss_pred CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHH
Confidence 011122333333333333332211 222333332221 2445555566666666666777
Q ss_pred HHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038401 144 RLLIEEMREQG--VKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMR 221 (542)
Q Consensus 144 ~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 221 (542)
.++++++.-.+ +.-+...-+.|+-...+ -+...+.+..+++..-+. |+ +...+...+-+++|+.+|+...
T Consensus 1004 IELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 1004 IELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred HHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhc
Confidence 77776665321 11122222333332222 333445555555443321 11 2333444555666666665542
Q ss_pred HCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 038401 222 KMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAIT 301 (542)
Q Consensus 222 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 301 (542)
.+....+.|+. .-+..++|.++-+... .+..|+.+..+-.+.|...+|++-|-+. -|+..
T Consensus 1076 -----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~ 1135 (1666)
T KOG0985|consen 1076 -----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSN 1135 (1666)
T ss_pred -----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHH
Confidence 23333333333 2344555554443332 4456777777777777777777655432 25667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCH
Q 038401 302 YSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRI 381 (542)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 381 (542)
|..++....+.|.+++-.+.+...++..-.|. +-..|+-+|++.++..+-.+++ ..++......+.+-|...|.+
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhh
Confidence 77777777778888877777777766544433 3345667777777776655543 234444555555666666666
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 038401 382 EEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEM 461 (542)
Q Consensus 382 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 461 (542)
+.|.-+|... ..|..|...+...|+++.|...-+++ .+..+|..+..+|...+.+.-| ++
T Consensus 1211 ~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----Qi 1270 (1666)
T KOG0985|consen 1211 EAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QI 1270 (1666)
T ss_pred HHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----Hh
Confidence 6665554432 23555555566666666655443332 2345555555555554443322 22
Q ss_pred HHcCCCCchHHHHHHHHHHhccCChHHHHHHHHH
Q 038401 462 QEEGCVFSDQVHFQMLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 462 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (542)
.-.+.+......-.++..|...|-+++.+.+++.
T Consensus 1271 CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1271 CGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 2222222222222244555555555555555544
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.7e-06 Score=82.46 Aligned_cols=409 Identities=14% Similarity=0.150 Sum_probs=209.2
Q ss_pred CHHhHHHHHH--HHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCC---------CC
Q 038401 53 DRYTYSTLIT--CFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSG---------IV 121 (542)
Q Consensus 53 ~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~ 121 (542)
|..|-..+++ .|.-.|+.+.|.+..+.+. +...|..+.+.|.+..+++-|.-.+-.|.... -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4555555554 3556788888877776654 44678888888888888877776665554321 01
Q ss_pred ccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 038401 122 PDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMI 201 (542)
Q Consensus 122 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 201 (542)
|+ ..-..........|.+++|+.+|++... |..|=..|-..|.|++|.++-+.--... =..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 21 2222233344567888888888888765 3445556677888888888765432222 123455555
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHH
Q 038401 202 DVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHE 281 (542)
Q Consensus 202 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (542)
..+-..++.+.|++.|++... |--.++..|. .++....++.+.+. |...|.....-+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchH
Confidence 566666777777777765321 1111111111 11222222222221 3344444444455566666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 038401 282 KATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELR 361 (542)
Q Consensus 282 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (542)
.|+.++....+ |-.+++..|-.|+.++|-++-++- | |......+.+.|...|++.+|..+|.+..
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66666665543 333444455566666666554432 1 34444455666666666666666665543
Q ss_pred CC--------CCCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH-------
Q 038401 362 QP--------NTIPRETAITILARA--GRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFE------- 424 (542)
Q Consensus 362 ~~--------~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------- 424 (542)
.- ....-..+...+... .+.-.|-.+|++. |. ...--+..|-+.|.+.+|+++--
T Consensus 995 afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~a 1066 (1416)
T KOG3617|consen 995 AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSA 1066 (1416)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHH
Confidence 10 000011112221111 1222223333322 10 01112334555566555554411
Q ss_pred -HHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhcCCC
Q 038401 425 -KMRSAGYFP--DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDSDSN 501 (542)
Q Consensus 425 -~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 501 (542)
+++..++.| |+..++....-++...++++|..++-.+.+. .-+--++...+..--.++-+.|....+
T Consensus 1067 L~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~----------~~AlqlC~~~nv~vtee~aE~mTp~Kd 1136 (1416)
T KOG3617|consen 1067 LDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF----------SGALQLCKNRNVRVTEEFAELMTPTKD 1136 (1416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHhcCCCchhHHHHHhcCcCcC
Confidence 112223333 5566666667777777788777777666542 111112333333334444455422211
Q ss_pred CCc-----hhHHHHHHHHHHhhcchhhHHHHHH
Q 038401 502 INK-----KELHHVVAGIYERANRLNDASRIMN 529 (542)
Q Consensus 502 ~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 529 (542)
..+ ......++++|.++|.|..|-+-|-
T Consensus 1137 ~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1137 DMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred CCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 111 2556677777777777766655443
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=8e-09 Score=90.91 Aligned_cols=245 Identities=13% Similarity=0.114 Sum_probs=127.0
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038401 241 EAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAM 320 (542)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 320 (542)
-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3455555554333 222211122333444555666666655332 2222222 4444444444433333334444444
Q ss_pred HHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcC
Q 038401 321 LFQKLRSSGVEI-DPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKD 399 (542)
Q Consensus 321 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (542)
-++......... +..........+...|++++|++++... .+.......+.++.+.++++.|.+.++.|.+. ..|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 444333322221 2222222223345566777776666543 22223333466677777778887777777664 233
Q ss_pred HHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH
Q 038401 400 ISVFGCMIELFS----RNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ 475 (542)
Q Consensus 400 ~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 475 (542)
.. ...+..++. ..+.+.+|.-+|+++.+. +.+++.+++.++.++...|++++|.+.++++.+.+ +.++.+..
T Consensus 164 ~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d~La 239 (290)
T PF04733_consen 164 SI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPDTLA 239 (290)
T ss_dssp HH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHH
T ss_pred HH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHHHHH
Confidence 22 223333332 234688888888887653 45777888888888888888888888888887765 33444444
Q ss_pred -HHHHHhccCCh-HHHHHHHHHHhc
Q 038401 476 -MLSLYGARKDF-NMLESLFERLDS 498 (542)
Q Consensus 476 -l~~~~~~~g~~-~~A~~~~~~~~~ 498 (542)
++.+....|+. +.+.++++++..
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHH
Confidence 77777777776 566778888653
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=1.6e-06 Score=80.97 Aligned_cols=92 Identities=16% Similarity=0.065 Sum_probs=46.4
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCCh--hHHHHHHHHHH
Q 038401 164 TLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGI-DPSV--VSYNTLLRVYG 240 (542)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~ 240 (542)
.+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++....... .++. ..+..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445555555555555555555543 22344445555555555555655555555544321 1111 12334455555
Q ss_pred hcCcHHHHHHHHHHHH
Q 038401 241 EAELFGEAIHLFRLMQ 256 (542)
Q Consensus 241 ~~~~~~~a~~~~~~~~ 256 (542)
..|++++|..+++...
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 6666666666665553
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=3e-08 Score=90.52 Aligned_cols=249 Identities=11% Similarity=0.065 Sum_probs=179.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 038401 272 KIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVA 351 (542)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (542)
.-+.+.|++.+|.-.|+...... +-+...|..|.......++-..|+..+++..+.+ +-+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567888888888888887763 3356678888888888888888999999888875 446777788888888999888
Q ss_pred HHHHHHHHhcCCCCCCH-HHH---------HHHHHHhCCHHHHHHHHHHH-HHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038401 352 HAKRLLHELRQPNTIPR-ETA---------ITILARAGRIEEATWVFRQA-FDAGEVKDISVFGCMIELFSRNKKYANVI 420 (542)
Q Consensus 352 ~a~~~~~~~~~~~~~~~-~~l---------~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 420 (542)
+|.+.++......+.-. ... -..+.....+....++|-.+ .+.+...|+.+...|+-.|--.|++++|+
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99998888743211100 000 01111222233334444444 44444578999999999999999999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH--HHHHHHHHHhccCChHHHHHHHHH-H
Q 038401 421 EVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ--VHFQMLSLYGARKDFNMLESLFER-L 496 (542)
Q Consensus 421 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~-~ 496 (542)
..|+.++. ++| |...|+.|+..+....+.++|+..|+++++.. |.. +.|.|+-.|...|.|++|.+.|-. +
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq---P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ---PGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC---CCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999998 668 45889999999999999999999999999976 554 345599999999999999988877 2
Q ss_pred --hcCC------CCCchhHHHHHHHHHHhhcchhhHHHH
Q 038401 497 --DSDS------NINKKELHHVVAGIYERANRLNDASRI 527 (542)
Q Consensus 497 --~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 527 (542)
.... +..+..+|..|=.++.-.++.+-+.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2110 111235777777777777776655443
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.05 E-value=6.3e-06 Score=87.37 Aligned_cols=331 Identities=9% Similarity=-0.016 Sum_probs=191.0
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcC--C----CCC--HHHHHHHHHHHH
Q 038401 99 ARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQG--V----KPD--TVSYSTLLNLYV 170 (542)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~----~~~--~~~~~~l~~~~~ 170 (542)
....|+++.+...++.+.......++.........+...|+++++...+......- . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 34456666666666554211111122223334445566788888888887765421 0 111 112222334556
Q ss_pred HCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHHCCC---CCC--hhHHHHHHHHHHh
Q 038401 171 ENHKFVEALSVFAEMNEVNCPLDL----TTCNIMIDVYGQLDMAKDADRLFWSMRKMGI---DPS--VVSYNTLLRVYGE 241 (542)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~ 241 (542)
..|++++|...+++........+. ...+.+...+...|++++|...+++.....- .+. ..+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788888888888887653111121 2344555666778888888888877764210 111 2334455666778
Q ss_pred cCcHHHHHHHHHHHHhc----CCC--C-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHH
Q 038401 242 AELFGEAIHLFRLMQRK----EIE--Q-NVVTYNTMIKIYGKSLEHEKATNLMQEMQNR--GIEPN--AITYSTIIAIWG 310 (542)
Q Consensus 242 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~ 310 (542)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888887776542 211 1 1223444555666778888888888776542 11121 233444555677
Q ss_pred hcCCHHHHHHHHHHHHhcC--CCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHhcCCCCC-C------HHHHHHHHHH
Q 038401 311 KAGKLDRAAMLFQKLRSSG--VEIDPV--LY--QTMIVAYERVGLVAHAKRLLHELRQPNTI-P------RETAITILAR 377 (542)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~------~~~l~~~~~~ 377 (542)
..|+++.|...+....... ...... .. ...+..+...|+.+.|..++.....+... . ...+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 7888888888887765421 111110 00 11223445578888888887776543211 1 1234556777
Q ss_pred hCCHHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038401 378 AGRIEEATWVFRQAFDA----GEVK-DISVFGCMIELFSRNKKYANVIEVFEKMRSA 429 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 429 (542)
.|++++|...++++... +... ...+...+..++...|+.++|...+.++++.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888887653 2211 2345666677788888888888888888764
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=5.5e-06 Score=87.84 Aligned_cols=332 Identities=11% Similarity=-0.002 Sum_probs=195.5
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCC------CCCh--hhHHHHHHHHh
Q 038401 134 FGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNC------PLDL--TTCNIMIDVYG 205 (542)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~~~ 205 (542)
....|+++.+...++.+.......+..........+...|+++++...+......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666665542211111222223344455678888988888877654210 1111 11222334456
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHc
Q 038401 206 QLDMAKDADRLFWSMRKMGIDPSV----VSYNTLLRVYGEAELFGEAIHLFRLMQRK----EI-EQNVVTYNTMIKIYGK 276 (542)
Q Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~ 276 (542)
..|+++.|...++.....-...+. ...+.+...+...|++++|...++..... +. .........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788899999888887653111121 23345556667789999998888877643 11 1112344556667788
Q ss_pred cCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHH
Q 038401 277 SLEHEKATNLMQEMQNR----GIE--P-NAITYSTIIAIWGKAGKLDRAAMLFQKLRSSG--VEI--DPVLYQTMIVAYE 345 (542)
Q Consensus 277 ~~~~~~a~~~~~~~~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~ 345 (542)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 89999998888776542 211 1 12234444555667799999988888765421 111 1333444556677
Q ss_pred HcCCHHHHHHHHHHhcC----CCC-CCHHH-----HHHHHHHhCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHh
Q 038401 346 RVGLVAHAKRLLHELRQ----PNT-IPRET-----AITILARAGRIEEATWVFRQAFDAGEVKD---ISVFGCMIELFSR 412 (542)
Q Consensus 346 ~~~~~~~a~~~~~~~~~----~~~-~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 412 (542)
..|+.+.|.+.+..... ... ..+.. ....+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 88999988888777632 111 11111 12334457888888888776544211111 1123456677788
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 413 NKKYANVIEVFEKMRSA----GYFPD-SHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 413 ~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.|++++|...++++... |..++ ..+...+..++...|+.++|...+.++.+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999998888887653 32222 2456667778888899999999999888764
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.02 E-value=3.8e-08 Score=85.67 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=50.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHhc-CCCC-CchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 475 QMLSLYGARKDFNMLESLFERLDS-DSNI-NKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
.++..+.+.|++++|+..++++.. .|+. ....++..++.+|...|++++|..+++.+..+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 367788899999999999999543 3432 235789999999999999999999999987765
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=9.9e-08 Score=84.06 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=60.5
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHh----ccC
Q 038401 133 VFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYG----QLD 208 (542)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 208 (542)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++. ..+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 334445555555544332 133444444455555555555555555554432 11 22222222221 122
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCH-HHHHHHH
Q 038401 209 MAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEH-EKATNLM 287 (542)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~ 287 (542)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+ +.+..+...++.+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 344555555554332 23444444444444555555555555554444332 22333333344444444443 3344444
Q ss_pred HHHHH
Q 038401 288 QEMQN 292 (542)
Q Consensus 288 ~~~~~ 292 (542)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=2.9e-07 Score=86.52 Aligned_cols=214 Identities=12% Similarity=0.089 Sum_probs=171.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 038401 267 YNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYER 346 (542)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (542)
-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+.....+. +||+..|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3556677888888899998887764 4677788899999999999998888874 7899999999998888
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038401 347 VGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKM 426 (542)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 426 (542)
..-+++|.++.+..... .-..+.....+.++++++.+.|+...+.. +....+|-.+..+..+.++++.|.+.|...
T Consensus 470 ~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 88889999988775432 11112222344789999999999998864 356788989999999999999999999999
Q ss_pred HhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhc
Q 038401 427 RSAGYFPDS-HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDS 498 (542)
Q Consensus 427 ~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 498 (542)
+. ..||. ..|+.+..+|.+.|+..+|...++++.+.+ ..+-..+-....+..+.|.+++|++.+.++..
T Consensus 546 vt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 98 56754 889999999999999999999999999987 33444444466778889999999999998643
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.89 E-value=5.5e-05 Score=69.20 Aligned_cols=407 Identities=11% Similarity=0.119 Sum_probs=238.9
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 038401 16 SPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNL 95 (542)
Q Consensus 16 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 95 (542)
+-|+.+|+.||+-+..+ -++++.+.++++... .+-.+..|..-|..-....+++....+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 56889999999988777 999999999999876 3446779999999999999999999999998776 3456677766
Q ss_pred HHHHHhc-CCHHH----HHHHHHHhH-hCCCCc-cHhHHHHHHHH---------HhccCcHHHHHHHHHHHHHcCCCCCH
Q 038401 96 IELARKL-SDYSK----AISIFSRLK-SSGIVP-DLVAYNTMINV---------FGKAKLFKEARLLIEEMREQGVKPDT 159 (542)
Q Consensus 96 ~~~~~~~-~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~g~~~~~ 159 (542)
+.-..+. ++... ..+.|+-.. +.|..+ +-..|+..+.. +..+.+.+...++++++...-+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 6544332 22222 233344333 334333 23345544433 23344667778888887754221111
Q ss_pred H------HHHHHHHHH-------HHCCChHHHHHHHHHHHh--cCCCCChhh---------------HHHHHHHHhccC-
Q 038401 160 V------SYSTLLNLY-------VENHKFVEALSVFAEMNE--VNCPLDLTT---------------CNIMIDVYGQLD- 208 (542)
Q Consensus 160 ~------~~~~l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~~~~~- 208 (542)
. .|..=++.. -+...+-.|.++++++.. .|...+..+ |..+|..-...+
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 1 121111111 123456677777777643 122111111 322332211111
Q ss_pred -----CH--HHHHHHHHHHH-HCCCCCChhHHH-HHH----HHHHhcCc-------HHHHHHHHHHHHhcCCCCcHHHHH
Q 038401 209 -----MA--KDADRLFWSMR-KMGIDPSVVSYN-TLL----RVYGEAEL-------FGEAIHLFRLMQRKEIEQNVVTYN 268 (542)
Q Consensus 209 -----~~--~~a~~~~~~~~-~~~~~~~~~~~~-~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 268 (542)
.. ....-++++.. -.+..|+..... ..+ +.+...|+ .+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11111222221 123333322111 111 12222333 345555665554432222334444
Q ss_pred HHHHHHH---ccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHH
Q 038401 269 TMIKIYG---KSLEHEKATNLMQEMQNRG-IEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEI-DPVLYQTMIVA 343 (542)
Q Consensus 269 ~l~~~~~---~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 343 (542)
.+...-- ..+..+.....+++++..- +.| ..+|..++....+...+..|..+|.++.+.+..+ +..+.++++.-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 4333211 1123555666666665542 233 3567788888788888999999999998877666 66777777775
Q ss_pred HHHcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHH
Q 038401 344 YERVGLVAHAKRLLHELRQ---PNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKD--ISVFGCMIELFSRNKKYAN 418 (542)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 418 (542)
+ ..++..-|.++|+.-.+ ..+.-....+..+...++-..+..+|++++..+..++ ...|..++.--..-|+...
T Consensus 412 ~-cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 412 Y-CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred H-hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 46788889999887554 2233344557777888888889999999888755443 5788888888888899888
Q ss_pred HHHHHHHHHh
Q 038401 419 VIEVFEKMRS 428 (542)
Q Consensus 419 A~~~~~~~~~ 428 (542)
+.++-+++..
T Consensus 491 i~~lekR~~~ 500 (656)
T KOG1914|consen 491 ILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHH
Confidence 8888877765
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.89 E-value=2.5e-07 Score=76.88 Aligned_cols=144 Identities=9% Similarity=0.086 Sum_probs=102.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038401 341 IVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVI 420 (542)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 420 (542)
+..|...|+++.+....+.+..+.. -+...++.+++...+++.++.. +.+...|..++..|...|++++|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3457888888887555433322110 1123677788888888888764 467888888888888999999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHH-hccCc--HHHHHHHHHHHHHcCCCCchHHH-HHHHHHHhccCChHHHHHHHHH
Q 038401 421 EVFEKMRSAGYFP-DSHIIALVLNSY-GKLRE--FETADDLYSEMQEEGCVFSDQVH-FQMLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 421 ~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 495 (542)
..|++..+. .| +...+..+..++ ...|+ .++|.++++++++.+ |.+... +.++..+...|++++|+..+++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999988884 45 556777777764 56676 588999999988877 222233 3388888889999999998888
Q ss_pred Hh
Q 038401 496 LD 497 (542)
Q Consensus 496 ~~ 497 (542)
+.
T Consensus 170 aL 171 (198)
T PRK10370 170 VL 171 (198)
T ss_pred HH
Confidence 53
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=9.8e-07 Score=80.91 Aligned_cols=222 Identities=15% Similarity=0.061 Sum_probs=139.7
Q ss_pred HHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 038401 27 RNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYS 106 (542)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (542)
..+.+.|++.+|.-.|+...+.++. +...|..|......+++-..|+..+++..+..+. +......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 3456777888888888887777544 6778888888888888888888888887776432 5667777777777777777
Q ss_pred HHHHHHHHhHhCCCCccHhHHHHHH---------HHHhccCcHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCChH
Q 038401 107 KAISIFSRLKSSGIVPDLVAYNTMI---------NVFGKAKLFKEARLLIEEMR-EQGVKPDTVSYSTLLNLYVENHKFV 176 (542)
Q Consensus 107 ~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~l~~~~~~~g~~~ 176 (542)
.|...++.-+... +|- .|...- ..+.....+....++|-++. ..+..+|......|.-.|.-.|+++
T Consensus 371 ~Al~~L~~Wi~~~-p~y--~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 371 QALKMLDKWIRNK-PKY--VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHhC-ccc--hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 7777777665432 110 000000 11222223334444444433 3343456666666666677777777
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 038401 177 EALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPS-VVSYNTLLRVYGEAELFGEAIHLFRLM 255 (542)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 255 (542)
+|.+.|+..+... |-|...||.+...++...+.++|+..|.+.++. .|+ +.+...|.-+|...|.+++|.+.|-..
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 7777777776653 446666777777777777777777777777765 333 334444555667777777777666544
Q ss_pred H
Q 038401 256 Q 256 (542)
Q Consensus 256 ~ 256 (542)
+
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 3
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=1.3e-06 Score=87.95 Aligned_cols=224 Identities=11% Similarity=0.072 Sum_probs=138.8
Q ss_pred CChhHHHHHHHHHHhcCcHHHHHHHHHHHHhc-CCCC---cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 038401 227 PSVVSYNTLLRVYGEAELFGEAIHLFRLMQRK-EIEQ---NVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITY 302 (542)
Q Consensus 227 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 302 (542)
-+...|-..|......++.+.|.++.++.+.. ++.- -.-.|.++++.-..-|.-+...++|+++.+.. -....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 34455666666667777777777777776654 1111 12345666665556666667777777766541 123346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHH
Q 038401 303 STIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQP-----NTIPRETAITILAR 377 (542)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~ 377 (542)
..|...|.+.+..++|.++++.|.+. +.....+|...+..+.+..+-+.|..++.+..+. ........+.+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 66677777777777777777777664 2345667777777777777777777777665431 22223334555667
Q ss_pred hCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHH
Q 038401 378 AGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS--HIIALVLNSYGKLREFETA 454 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A 454 (542)
.|+.+++..+|+..+.. .+.....|+.+++.-.++|+.+.+..+|+++...++.|-. ..|..++..--+.|+-+.+
T Consensus 1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 77777777777777765 3345667777777777777777777777777776666543 3444444433344444433
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=4.3e-07 Score=79.04 Aligned_cols=183 Identities=13% Similarity=-0.027 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCC------H
Q 038401 298 NAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDP---VLYQTMIVAYERVGLVAHAKRLLHELRQPNTIP------R 368 (542)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~ 368 (542)
....+..+...+...|+++.|...++++..... .++ ..+..+..++.+.|++++|...++++.+..+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 445566666777778888888888888776531 122 355666677777777877777777765422211 2
Q ss_pred HHHHHHHHHh--------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038401 369 ETAITILARA--------GRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIAL 440 (542)
Q Consensus 369 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 440 (542)
..+..++... |+++.|.+.++++++..+ .+...+..+..... .... . ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----HHHH------H--------HHHHHH
Confidence 2223333332 556666666666666422 22222222211100 0000 0 001124
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCch--HHHHHHHHHHhccCChHHHHHHHHHHhcCC
Q 038401 441 VLNSYGKLREFETADDLYSEMQEEGCVFSD--QVHFQMLSLYGARKDFNMLESLFERLDSDS 500 (542)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 500 (542)
+...+.+.|++++|...++++.+..+..|. ...+.++.++...|++++|.+.++.+..++
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566788899999999999999987633232 234448999999999999999999886654
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=8.1e-07 Score=83.66 Aligned_cols=220 Identities=13% Similarity=0.110 Sum_probs=172.6
Q ss_pred CCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038401 226 DPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTI 305 (542)
Q Consensus 226 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 305 (542)
+|--..-..+...+.+.|-...|..+++... .|..++.+|...|+..+|..+..+..++ +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444566778889999999999998665 5778899999999999999999888875 8899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCC---CCCHHHHHHHHHHhCCHH
Q 038401 306 IAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPN---TIPRETAITILARAGRIE 382 (542)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 382 (542)
.+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-...+ ..+|.....+..+.+++.
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 88877777788888888765432 12222233345789999999998765543 345666667778999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038401 383 EATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQ 462 (542)
Q Consensus 383 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 462 (542)
.|.+.|...... .+.+...||.+..+|.+.|+..+|...+++..+.+.. +...|...+-...+.|.+++|.+.++++.
T Consensus 537 ~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999999999885 3456889999999999999999999999999987633 34556666666779999999999999988
Q ss_pred HcC
Q 038401 463 EEG 465 (542)
Q Consensus 463 ~~~ 465 (542)
...
T Consensus 615 ~~~ 617 (777)
T KOG1128|consen 615 DLR 617 (777)
T ss_pred Hhh
Confidence 754
No 114
>PLN02789 farnesyltranstransferase
Probab=98.83 E-value=1e-05 Score=72.42 Aligned_cols=215 Identities=10% Similarity=0.111 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 038401 21 AYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEG-MFDSAISWLQQMEQDRVSGDLVLYSNLIELA 99 (542)
Q Consensus 21 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (542)
++..+-..+...++.++|+.+.+.+++..+. +..+|+....++...| ++++++..++++.+.+++ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 4555556666778888899998888886433 5556776666666666 578888888888877544 555676665556
Q ss_pred HhcCCH--HHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC---CC
Q 038401 100 RKLSDY--SKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVEN---HK 174 (542)
Q Consensus 100 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~ 174 (542)
.+.|+. +.+..+++++.+.. +.+..+|+....++...|+++++++.++++++.+.. +...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 666653 56777887777664 456777887777777888888888888888876533 556666655554443 22
Q ss_pred h----HHHHHHHHHHHhcCCCCChhhHHHHHHHHhcc----CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 038401 175 F----VEALSVFAEMNEVNCPLDLTTCNIMIDVYGQL----DMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGE 241 (542)
Q Consensus 175 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 241 (542)
. ++.++...++.... |-|...|+-+...+... +...++...+.+....+ +.+......|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2 35566665655543 44666676666666552 23345666666655543 3445556666666653
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=3.9e-07 Score=71.59 Aligned_cols=121 Identities=10% Similarity=0.039 Sum_probs=88.5
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038401 385 TWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQE 463 (542)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 463 (542)
...++++++. .|+ .+..+...+...|++++|...|++++.. .| +...+..++.++...|++++|...|+++.+
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4556666653 233 3556777888899999999999998874 45 567888888899999999999999999998
Q ss_pred cCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHH
Q 038401 464 EGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIY 515 (542)
Q Consensus 464 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~ 515 (542)
.+ |.+...+. ++.++...|++++|+..+++ +...|+ ....|...+.+.
T Consensus 87 l~--p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~--~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LD--ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA--DASWSEIRQNAQ 136 (144)
T ss_pred cC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHH
Confidence 76 23333333 88889999999999999999 444554 345565555544
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.82 E-value=2.2e-06 Score=70.89 Aligned_cols=159 Identities=15% Similarity=0.088 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCC---CHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 038401 333 DPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTI---PRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIEL 409 (542)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (542)
|..+ ..+-..+...|+-+....+.......++. .....+....+.|++..|...++++... -++|...|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence 3444 45556666777777777777665432222 2333567778889999999999998876 45889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChH
Q 038401 410 FSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFN 487 (542)
Q Consensus 410 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~ 487 (542)
|.+.|++++|..-|.+..+ +.| +....+.+...+.-.|+.+.|..++....... +.+..... ++.+....|+++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 144 LDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChH
Confidence 9999999999999999998 445 45778888888999999999999999998865 22333333 889999999999
Q ss_pred HHHHHHHHHh
Q 038401 488 MLESLFERLD 497 (542)
Q Consensus 488 ~A~~~~~~~~ 497 (542)
+|......-.
T Consensus 220 ~A~~i~~~e~ 229 (257)
T COG5010 220 EAEDIAVQEL 229 (257)
T ss_pred HHHhhccccc
Confidence 9999888744
No 117
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=6.4e-05 Score=64.71 Aligned_cols=304 Identities=12% Similarity=0.039 Sum_probs=203.9
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHh-HHHH
Q 038401 17 PSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVL-YSNL 95 (542)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l 95 (542)
.++.----+...+...|++.+|+.-|....+-++. +-.++-.-...|...|+-..|+.-+.+.++. +||-.. -..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 34444555677788889999999988888775211 2233344445778888888888888888775 555322 2223
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCc--cHhH------------HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHH
Q 038401 96 IELARKLSDYSKAISIFSRLKSSGIVP--DLVA------------YNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVS 161 (542)
Q Consensus 96 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 161 (542)
...+.+.|.++.|..=|+.+++..... .... ....+..+...|+...|+..+..+.+.. +-|...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 345778999999999999998763211 1111 1223445667889999999999988863 347888
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHH------
Q 038401 162 YSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTL------ 235 (542)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 235 (542)
+..-..+|...|++..|+.-++...+.. ..++.++..+-..+...|+.+.++...++.++. .||...+-..
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 8888999999999999988888776653 346677777788888899999998888888876 4554322111
Q ss_pred -------HHHHHhcCcHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 038401 236 -------LRVYGEAELFGEAIHLFRLMQRKEIEQNV---VTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPN-AITYST 304 (542)
Q Consensus 236 -------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ 304 (542)
+......+++.++++..+...+..+.... ..+..+-.++...+++.+|++...+.++. .|+ ..++.-
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~d 346 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHH
Confidence 11224456666666666666655332122 22334455566677777787777777654 343 667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 038401 305 IIAIWGKAGKLDRAAMLFQKLRSSG 329 (542)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~ 329 (542)
-..+|.-...++.|+.-|+...+.+
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777777788887777777653
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=1.8e-06 Score=77.84 Aligned_cols=140 Identities=15% Similarity=0.073 Sum_probs=101.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcH
Q 038401 373 TILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD-SHIIALVLNSYGKLREF 451 (542)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 451 (542)
......|.++.|+..++.++.. .+.|+..+....+.+...++..+|.+.+++++. ..|+ ......+..+|.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCCh
Confidence 3455668888888888888776 446677777777888888888888888888887 4576 45566777888888888
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHH
Q 038401 452 ETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNR 530 (542)
Q Consensus 452 ~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 530 (542)
++|+.+++...... |.++..|. |+.+|...|+..+|.... +..|...|+|++|+..+++
T Consensus 391 ~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 391 QEAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHH
Confidence 88888888888776 44555666 788888888776665433 3345556677777777766
Q ss_pred HHhcC
Q 038401 531 MNKRR 535 (542)
Q Consensus 531 ~~~~~ 535 (542)
..++.
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 66543
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.78 E-value=1.2e-06 Score=88.18 Aligned_cols=198 Identities=13% Similarity=0.138 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhcC-C-------CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 038401 333 DPVLYQTMIVAYERVGLVAHAKRLLHELRQ-P-------NTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFG 404 (542)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 404 (542)
+...|...|......++.++|.++.++... . ....|.+++.....-|.-+...++|+++.+- -.....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 344455555555555555555555555432 0 1122444444444455555556666666553 22334455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCch--HHHHH--HHHHH
Q 038401 405 CMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSD--QVHFQ--MLSLY 480 (542)
Q Consensus 405 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~--l~~~~ 480 (542)
.|...|.+.+.+++|.++++.|.+. +.-....|..++..+.+..+-+.|..+++++++.- |. ++-+. .+..-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l---Pk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL---PKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc---chhhhHHHHHHHHHHH
Confidence 5666666666666666666666553 22344556666666666666666666666666543 32 22121 44455
Q ss_pred hccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCC
Q 038401 481 GARKDFNMLESLFERL-DSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRTFN 538 (542)
Q Consensus 481 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 538 (542)
.+.|+.+.++.+|+.+ ...|. ....|...++.=.+.|..+.++.+|+++...++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK--RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK--RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc--chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5566666666666663 32332 23456655665556666666666666666655554
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.78 E-value=1.3e-06 Score=86.25 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=62.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHH-HHH
Q 038401 398 KDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQV-HFQ 475 (542)
Q Consensus 398 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 475 (542)
.+...+-.|.....+.|++++|..+++.+.+ +.|+. .....++..+.+.+++++|+..++++.... |+.. ...
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~---p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG---SSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC---CCCHHHHH
Confidence 3344455555555555555555555555554 33432 333444445555555555555555555544 2221 111
Q ss_pred -HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 476 -MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 476 -l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
++.++.+.|++++|..+|+++.. +++.+..++..++.++...|+.++|...|++..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555432 222234455555555555555555555555543
No 121
>PLN02789 farnesyltranstransferase
Probab=98.78 E-value=8e-06 Score=73.12 Aligned_cols=200 Identities=7% Similarity=-0.007 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhcCCCCCC---HHHHHHHHHHhCC--HHHHHH
Q 038401 313 GKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVG-LVAHAKRLLHELRQPNTIP---RETAITILARAGR--IEEATW 386 (542)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~--~~~A~~ 386 (542)
+..++|+..+.+++..+ +-+..+|+....++...| ++++++..++++...++.. |..-..++.+.|+ .++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 34444444444444432 112233333333333333 3455555555444322222 2222222333343 255667
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---Cc----HHHHHHHHH
Q 038401 387 VFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKL---RE----FETADDLYS 459 (542)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~~~ 459 (542)
+++++++.. +.+..+|+....++...|+++++++.++++++.+. -|...|+.....+.+. |. .++++.+..
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 777777653 35677777777777777788888888888877542 2445566555544443 22 245677776
Q ss_pred HHHHcCCCCchHHHHH-HHHHHhc----cCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhh
Q 038401 460 EMQEEGCVFSDQVHFQ-MLSLYGA----RKDFNMLESLFERLDSDSNINKKELHHVVAGIYERA 518 (542)
Q Consensus 460 ~~~~~~~~~~~~~~~~-l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 518 (542)
+++... |.+...+. +..++.. .+...+|.+.+.++.. .++....+...|+++|+..
T Consensus 208 ~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~-~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 208 DAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS-KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc-ccCCcHHHHHHHHHHHHhh
Confidence 777665 23333333 5555555 2344567777766433 2223456677777887753
No 122
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.75 E-value=6.4e-07 Score=70.79 Aligned_cols=124 Identities=7% Similarity=0.130 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH---HHH
Q 038401 402 VFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS----HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ---VHF 474 (542)
Q Consensus 402 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~ 474 (542)
.|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+.... ..|.. ..+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHH
Confidence 344444444 4788899999999998753 433 344456788889999999999999999976 22221 222
Q ss_pred HHHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHH
Q 038401 475 QMLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 531 (542)
.++.++...|++++|...++.+...+. ....+...+++|.+.|++++|+..|++.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 388999999999999999988654333 4567889999999999999999999875
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=2.6e-06 Score=70.89 Aligned_cols=95 Identities=9% Similarity=0.133 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 038401 368 RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELF-SRNKK--YANVIEVFEKMRSAGYFP-DSHIIALVLN 443 (542)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 443 (542)
|..+...+...|++++|...|+++.+.. +.+...+..+..++ ...|+ .++|.+++++.++. .| +...+..++.
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~ 152 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHH
Confidence 3334444444444444444444444432 12344444444432 33333 24444444444442 12 2344444444
Q ss_pred HHhccCcHHHHHHHHHHHHHcC
Q 038401 444 SYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 444 ~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.+.+.|++++|+..|+++++..
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC
Confidence 4444444444444444444443
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=3.3e-05 Score=64.11 Aligned_cols=245 Identities=12% Similarity=0.092 Sum_probs=139.0
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038401 241 EAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAM 320 (542)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 320 (542)
-.|++..++..-...... +.+...-..+.++|...|.+..... ++.... .|....+..+......-++.+.-..
T Consensus 20 Y~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHH
Confidence 345555554444333322 1233333344455555555433221 222211 3333333333333333444333333
Q ss_pred H-HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcC
Q 038401 321 L-FQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKD 399 (542)
Q Consensus 321 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (542)
- .+.+......-+......-...|...|++++|.+.++... +......-...+.+..+++-|.+.+++|.+. .+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 3 3333333222222222333345677778888877776622 2222222245567778888888888888763 34
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH
Q 038401 400 ISVFGCMIELFSR----NKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ 475 (542)
Q Consensus 400 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 475 (542)
..+.+.|..++.+ .+.+.+|.-+|++|-+. ..|+..+.+..+.++...|++++|..+++.++.+.. .++.+..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~--~dpetL~ 245 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA--KDPETLA 245 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC--CCHHHHH
Confidence 5566666666653 45688899999998763 568889999999999999999999999999998763 3344444
Q ss_pred -HHHHHhccCChHHH-HHHHHHHhcC
Q 038401 476 -MLSLYGARKDFNML-ESLFERLDSD 499 (542)
Q Consensus 476 -l~~~~~~~g~~~~A-~~~~~~~~~~ 499 (542)
++.+-...|...++ .+.+.++...
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 55555566666555 4777776544
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=5.7e-07 Score=70.65 Aligned_cols=95 Identities=9% Similarity=-0.049 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHh
Q 038401 368 RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYG 446 (542)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 446 (542)
+......+...|++++|...|+.++... +.+...|..++.++...|++++|+..|+++... .| +...+..++.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 4445566778888888888888888864 457888899999999999999999999999984 35 5688888888999
Q ss_pred ccCcHHHHHHHHHHHHHcC
Q 038401 447 KLREFETADDLYSEMQEEG 465 (542)
Q Consensus 447 ~~g~~~~A~~~~~~~~~~~ 465 (542)
..|+.++|+..|+++++..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999876
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.00027 Score=64.94 Aligned_cols=134 Identities=14% Similarity=0.139 Sum_probs=88.8
Q ss_pred CCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHH
Q 038401 51 APDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTM 130 (542)
Q Consensus 51 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 130 (542)
+-|..+|+.||+-+..+ .++++.+.++++... ++-.+..|..-+..-....+++....+|.+.... ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 34889999999987666 999999999999876 4557788999999999999999999999998865 3456667666
Q ss_pred HHHHhc-cCcHH----HHHHHHHHHH-HcCCCC-CHHHHHHHHHH---------HHHCCChHHHHHHHHHHHhc
Q 038401 131 INVFGK-AKLFK----EARLLIEEMR-EQGVKP-DTVSYSTLLNL---------YVENHKFVEALSVFAEMNEV 188 (542)
Q Consensus 131 ~~~~~~-~~~~~----~a~~~~~~~~-~~g~~~-~~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~~ 188 (542)
++.-.+ .++.. ...+.|+-.. +.|+.+ +...|+..+.. |..+.+.+...+++.++...
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 654332 22222 2233344333 334333 22334444332 33344556677777777654
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=5.4e-05 Score=62.36 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 038401 278 LEHEKATNLMQEMQNR---G-IEPNAI-TYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAH 352 (542)
Q Consensus 278 ~~~~~a~~~~~~~~~~---~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (542)
.+.++..+++.++... | ..++.. .|..++.+....|+.+.|...++.+... ++.+..+-..-...+...|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 4566666666666432 3 445544 3556666667778888888888887765 24344443333334566788888
Q ss_pred HHHHHHHhcCCCCCCH---HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038401 353 AKRLLHELRQPNTIPR---ETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA 429 (542)
Q Consensus 353 a~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 429 (542)
|.++++.+.+.++... ..=+-+....|+.-+|++-+....+. +..|...|..+.+.|...|++..|.-.+++++-
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll- 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL- 182 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-
Confidence 8888888776554332 22244455667777888877777776 668999999999999999999999999999987
Q ss_pred CCCCC-HHHHHHHHHHHhc---cCcHHHHHHHHHHHHHcC
Q 038401 430 GYFPD-SHIIALVLNSYGK---LREFETADDLYSEMQEEG 465 (542)
Q Consensus 430 ~~~p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~ 465 (542)
+.|. +..+..+...+.- ..+.+-|+++|.++++..
T Consensus 183 -~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 -IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred -cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 5574 4455556655543 335778999999999876
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=7.1e-05 Score=62.19 Aligned_cols=133 Identities=15% Similarity=0.210 Sum_probs=68.6
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh---
Q 038401 165 LLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGE--- 241 (542)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 241 (542)
-...|++.|++++|++.++... +......=+..+.+..+++-|.+.++.|.+. .+..|.+.|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 3445566666666666655411 2222222233344555566666666666543 244455555554432
Q ss_pred -cCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038401 242 -AELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAI 308 (542)
Q Consensus 242 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 308 (542)
.+.+.+|.-+|++|.++ .+|+..+.+....++...|++++|..+++...... .-++.+...++.+
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVL 250 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHH
Confidence 23455666666666553 24555566666666666666666666666665543 2234444444333
No 129
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=5.6e-08 Score=53.87 Aligned_cols=32 Identities=34% Similarity=0.548 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 038401 14 RYSPSVFAYNVVLRNVLRAKQWELAHGLFDEM 45 (542)
Q Consensus 14 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 45 (542)
|+.||+.+|+++|.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 130
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=5.7e-08 Score=53.84 Aligned_cols=32 Identities=41% Similarity=0.650 Sum_probs=22.8
Q ss_pred CCCCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 038401 49 GIAPDRYTYSTLITCFGKEGMFDSAISWLQQM 80 (542)
Q Consensus 49 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 80 (542)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=1.4e-05 Score=66.26 Aligned_cols=157 Identities=16% Similarity=0.109 Sum_probs=127.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 038401 369 ETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKL 448 (542)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 448 (542)
......+...|+-+.+..+..+.... .+.|......++....+.|++..|+..++++... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 34456677788888888888886554 4567778888999999999999999999999883 245789999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHH
Q 038401 449 REFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRI 527 (542)
Q Consensus 449 g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 527 (542)
|+.++|..-|.++.+..+ .++.... ++-.+.-.|+++.|..++......+.. +..+-..++.+....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~--~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAP--NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhcc--CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999999862 3333444 888888999999999999997666543 346677888899999999999887
Q ss_pred HHH
Q 038401 528 MNR 530 (542)
Q Consensus 528 ~~~ 530 (542)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 654
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.57 E-value=0.001 Score=65.11 Aligned_cols=478 Identities=12% Similarity=0.127 Sum_probs=262.0
Q ss_pred HHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH--HhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 038401 29 VLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITC--FGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYS 106 (542)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (542)
....+++..|.+-.+.+.++. |+. .|..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|...+..+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 345678999999998888763 343 23444443 45789999999888888766555 8889999999999999999
Q ss_pred HHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC-C---------hH
Q 038401 107 KAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENH-K---------FV 176 (542)
Q Consensus 107 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~---------~~ 176 (542)
+|..+|++.... .|+......+..+|.+.+++.+-.+.--++-+. .+-+...+=++++.+...- . ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999876 677777788888888888876554444443332 1223333333444433321 1 22
Q ss_pred HHHHHHHHHHhcC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHH-HHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHH
Q 038401 177 EALSVFAEMNEVN-CPLDLTTCNIMIDVYGQLDMAKDADRLFWSM-RKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRL 254 (542)
Q Consensus 177 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 254 (542)
-|.+.++.+.+.+ .-.+..-...........|++++|.+++..- .+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555666665543 1112222223334455678899999988433 3332233444455667777888899999888888
Q ss_pred HHhcCCCCcHHHHHHHHHHHH----------------ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038401 255 MQRKEIEQNVVTYNTMIKIYG----------------KSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRA 318 (542)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 318 (542)
+...+. |. |...++.+. ..+..+...+...+.......-.....--+..-+..-|+.+++
T Consensus 252 Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~ 327 (932)
T KOG2053|consen 252 LLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEM 327 (932)
T ss_pred HHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHH
Confidence 888752 32 322222111 1122223333333322221111111122222223355777776
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCH---------HHHHHHHHHhCCH-----HHH
Q 038401 319 AMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPR---------ETAITILARAGRI-----EEA 384 (542)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~l~~~~~~~g~~-----~~A 384 (542)
.-.|-+-... .| .+..=+..|...=..++-..++......+.... ...+......|.+ +.-
T Consensus 328 ~~~y~~kfg~--kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 328 LSYYFKKFGD--KP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred HHHHHHHhCC--Cc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 5544332211 11 111112222222223333333333322111110 0111111222321 222
Q ss_pred HHHHHHHH---HcC------CCcC---------HHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCC-CHHHHHHHH
Q 038401 385 TWVFRQAF---DAG------EVKD---------ISVFGCMIELFSRNKKYA---NVIEVFEKMRSAGYFP-DSHIIALVL 442 (542)
Q Consensus 385 ~~~~~~~~---~~~------~~~~---------~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p-~~~~~~~l~ 442 (542)
..++++.. +.| .-|+ ..+-+.|++.+.+.++.. +|+-+++..... .| |..+-..++
T Consensus 403 ~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlLi 480 (932)
T KOG2053|consen 403 LAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHHH
Confidence 23332222 222 1111 124566777888777644 566666666653 34 445556788
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchh
Q 038401 443 NSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLN 522 (542)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 522 (542)
+.|.-.|-...|.+.|..+--++ +..+...+.+...+...|++.-+...+....+-.+..-.+.-..++.+| +.|.|.
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~-IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~yS 558 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKN-IQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYS 558 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHH-hhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchh
Confidence 88888899999999998876555 4456666667777888889999998888843333322223333334444 666665
Q ss_pred hHHH
Q 038401 523 DASR 526 (542)
Q Consensus 523 ~A~~ 526 (542)
+-.+
T Consensus 559 kI~e 562 (932)
T KOG2053|consen 559 KIPE 562 (932)
T ss_pred hhHH
Confidence 5443
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.54 E-value=2e-06 Score=67.39 Aligned_cols=113 Identities=10% Similarity=0.056 Sum_probs=79.5
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 386 WVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
+.+++++... +.+......++..+...|++++|...|+++...+ +.+...+..+..++...|++++|..+++++.+.+
T Consensus 4 ~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566666642 2345556677777888888888888888887743 2256777788888888888888888888888766
Q ss_pred CCCchHHHHHHHHHHhccCChHHHHHHHHHH-hcCCC
Q 038401 466 CVFSDQVHFQMLSLYGARKDFNMLESLFERL-DSDSN 501 (542)
Q Consensus 466 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 501 (542)
+ .+....+.++.++...|++++|...+++. ...|+
T Consensus 82 p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 82 P-DDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 1 12233333788888888888888888884 43443
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=0.00014 Score=73.16 Aligned_cols=219 Identities=9% Similarity=0.098 Sum_probs=110.6
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHH
Q 038401 53 DRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMIN 132 (542)
Q Consensus 53 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 132 (542)
+...|..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+.+..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 3456666666666677777777776655554211 222333333344444443333222 2223
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHH
Q 038401 133 VFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKD 212 (542)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (542)
......++.-...+...+... .-+...+..+..+|-+.|+.+++..+++++.+.+ +-|+.+.|-+...|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 333333333333333344432 1233455666666666666667766666666665 44666666666666666 6666
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhc-------------------CCCCcHHHHHHHHHH
Q 038401 213 ADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRK-------------------EIEQNVVTYNTMIKI 273 (542)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~l~~~ 273 (542)
|..++.+.... +...+++..+.++|.++... +...-..++-.+...
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 66666655532 33333444444444444433 112223334444455
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038401 274 YGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIW 309 (542)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 309 (542)
|-..++++++..+++.+.+.. +-|.....-++.+|
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y 267 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHD-NKNNKAREELIRFY 267 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHH
Confidence 555566666666666666552 22334444444444
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=0.00048 Score=62.72 Aligned_cols=139 Identities=19% Similarity=0.171 Sum_probs=95.5
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 038401 238 VYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPN-AITYSTIIAIWGKAGKLD 316 (542)
Q Consensus 238 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 316 (542)
.+...|++++|+..++.+.... +.|...+......+.+.|+.++|.+.++++... .|+ ....-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3446677777777777776652 345555666667777777777777777777766 455 445556667777777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 038401 317 RAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDA 394 (542)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 394 (542)
+|..+++...... +.|+..|..|.++|...|+..++..... ..+...|+++.|...+..+.+.
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A--------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA--------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH--------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 7777777776653 5577777777777777777777765443 3456677777777777777665
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=9.5e-05 Score=74.29 Aligned_cols=233 Identities=10% Similarity=0.037 Sum_probs=119.1
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 038401 17 PSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDR-YTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNL 95 (542)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 95 (542)
.+...+..|+..+.+.+++++|.++.+...+.. |+. ..|-.+...+.+.++.+.+.-+ .+...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~------------ 92 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--NLIDS------------ 92 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--hhhhh------------
Confidence 345689999999999999999999999777753 333 3444444466677776666555 33222
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCh
Q 038401 96 IELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKF 175 (542)
Q Consensus 96 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 175 (542)
.....++.....+...+... .-+...+..+..+|-+.|+.+++..+++++.+.. +-+....+.+...|... +.
T Consensus 93 ---~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 93 ---FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred ---cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 11111221111122222221 1122344444444445555555555555544443 22444444444444444 44
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHH-----hccCCHHHHHHHHHHHHHC-CCCCChhHHHHHHHHHHhcCcHHHHH
Q 038401 176 VEALSVFAEMNEVNCPLDLTTCNIMIDVY-----GQLDMAKDADRLFWSMRKM-GIDPSVVSYNTLLRVYGEAELFGEAI 249 (542)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~ 249 (542)
++|.+++.+....-+ +..-|+.+...+ ....+.+.-..+.+.+... |...-..++-.+-..|...++++++.
T Consensus 166 ~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 166 EKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 555444444433210 011111111100 1112233333444444432 33334455666667777788888888
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHH
Q 038401 250 HLFRLMQRKEIEQNVVTYNTMIKIYG 275 (542)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (542)
.+++.+.+.. +.|......++.+|.
T Consensus 244 ~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 8888888775 335566666766664
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=5e-05 Score=62.58 Aligned_cols=183 Identities=15% Similarity=0.182 Sum_probs=137.0
Q ss_pred hcCCHHHHHHHHHHHHh---cC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHH--H-HHHHHHhCCHH
Q 038401 311 KAGKLDRAAMLFQKLRS---SG-VEIDPV-LYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRET--A-ITILARAGRIE 382 (542)
Q Consensus 311 ~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--l-~~~~~~~g~~~ 382 (542)
...+.++..+++..+.. .| ..++.. ++..++-+....|+.+.|...++.+...-+.+... + ...+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 45688999999988864 23 444543 34455666778899999999999987644433332 2 34456789999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038401 383 EATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQ 462 (542)
Q Consensus 383 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 462 (542)
+|+++++..++.+ +.|..++..-+-..-.+|+.-+|++-+...++. +..|...|..+...|...|++++|.-++++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999875 467777777777777888888999988888873 55688999999999999999999999999999
Q ss_pred HcCCCCchHHHHH-HHHHHhccC---ChHHHHHHHHHHh
Q 038401 463 EEGCVFSDQVHFQ-MLSLYGARK---DFNMLESLFERLD 497 (542)
Q Consensus 463 ~~~~~~~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~ 497 (542)
-.. |-++..+. ++.++.-.| +..-|.+++.+..
T Consensus 182 l~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 182 LIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 865 33444444 776665544 5777888998843
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.50 E-value=3.9e-07 Score=64.18 Aligned_cols=82 Identities=13% Similarity=0.255 Sum_probs=52.8
Q ss_pred cCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHH
Q 038401 448 LREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASR 526 (542)
Q Consensus 448 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 526 (542)
.|++++|+.+++++.+..+..++...+. ++.++.+.|++++|+.++++...++. +......++.+|...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~--~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPS--NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHC--HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677888888888877652222333333 67888888888888888877333332 33444456888888888888888
Q ss_pred HHHHH
Q 038401 527 IMNRM 531 (542)
Q Consensus 527 ~~~~~ 531 (542)
.+++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 87763
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.49 E-value=9.7e-06 Score=63.47 Aligned_cols=91 Identities=16% Similarity=0.051 Sum_probs=42.6
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 038401 373 TILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFE 452 (542)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 452 (542)
..+...|++++|.+.++.+.+.+ +.+...|..+..++...|++++|...+++..+.+ +.+...+..+..++...|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHH
Confidence 33444455555555555554432 2344444445555555555555555555544422 112344444444555555555
Q ss_pred HHHHHHHHHHHcC
Q 038401 453 TADDLYSEMQEEG 465 (542)
Q Consensus 453 ~A~~~~~~~~~~~ 465 (542)
+|...|+++++..
T Consensus 103 ~A~~~~~~al~~~ 115 (135)
T TIGR02552 103 SALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555443
No 140
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=3.5e-05 Score=76.40 Aligned_cols=133 Identities=11% Similarity=0.005 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCC---HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 038401 330 VEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIP---RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCM 406 (542)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 406 (542)
.+.+...+..|.....+.|.+++|..+++...+..+.. ...++..+.+.+++++|+..+++.++.. +.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 34456777777777777777777777777766533332 3345666777777777777777777653 3456666667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 407 IELFSRNKKYANVIEVFEKMRSAGYFPD-SHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 407 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
..++.+.|++++|..+|+++... .|+ ..++..+..++...|+.++|...|+++.+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 77777777777777777777762 243 4666677777777777777777777777654
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=8.3e-06 Score=74.47 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 038401 338 QTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYA 417 (542)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 417 (542)
..++..+...++++.|..+++++.+.++.....++..+...++-.+|.+++.+.++. .+.+...+..-...+...++++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHH
Confidence 344445555666666666666666666665555666666666677777777777765 3345666666677777788888
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038401 418 NVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFETADDLYSEMQ 462 (542)
Q Consensus 418 ~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 462 (542)
.|+++.+++.+ ..|+. .+|..|..+|.+.|++++|+..++.+.
T Consensus 252 lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888877 44644 677788888888888888887777655
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.41 E-value=1.6e-05 Score=72.70 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhcc
Q 038401 405 CMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGAR 483 (542)
Q Consensus 405 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~ 483 (542)
.|+..+...++++.|+.+|+++.+.. |+. ...+++.+...++-.+|.+++++.+... |.+..... -+..+...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 33444444555555555555555532 332 2224444444555555555555555443 11222222 34445555
Q ss_pred CChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 484 KDFNMLESLFERL-DSDSNINKKELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 484 g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
|+++.|.++.++. ...|+ .-..|..|+.+|...|++++|+..+..++
T Consensus 248 ~~~~lAL~iAk~av~lsP~--~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS--EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555553 22222 33455555555555555555555555544
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=2.7e-05 Score=59.39 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCch--HHHHHH
Q 038401 403 FGCMIELFSRNKKYANVIEVFEKMRSAGYFPD----SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSD--QVHFQM 476 (542)
Q Consensus 403 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l 476 (542)
+..++..+...|++++|.+.|+++.+.. |+ ...+..++.++.+.|++++|...|+.+....+..+. ...+.+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3344444555555555555555554421 21 123334445555555555555555555543311111 112224
Q ss_pred HHHHhccCChHHHHHHHHH
Q 038401 477 LSLYGARKDFNMLESLFER 495 (542)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~ 495 (542)
+.++.+.|++++|...+++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHHHhCChHHHHHHHHH
Confidence 4555555555555555555
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=8.7e-05 Score=58.63 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=75.0
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcH
Q 038401 377 RAGRIEEATWVFRQAFDAGEVKD---ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS--HIIALVLNSYGKLREF 451 (542)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~ 451 (542)
..++...+...++.+.+... .+ ....-.+...+...|++++|...|+.+......|+. .....+...+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 46777777777777776532 22 223334556677888888888888888875522221 2344567777888888
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH
Q 038401 452 ETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 452 ~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 495 (542)
++|+..++...... ....... .+.++.+.|++++|+..+++
T Consensus 102 d~Al~~L~~~~~~~---~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEA---FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcc---hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888886643221 2222333 77888888888888888775
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.19 E-value=4.1e-06 Score=58.92 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=44.8
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHH
Q 038401 413 NKKYANVIEVFEKMRSAGY-FPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLES 491 (542)
Q Consensus 413 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 491 (542)
.|+++.|+.+++++.+... .|+...+..++.+|.+.|++++|..++++ .+.+ ..+....+.++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4666777777777766321 11334444466677777777777777766 3222 1112233335667777777777777
Q ss_pred HHHH
Q 038401 492 LFER 495 (542)
Q Consensus 492 ~~~~ 495 (542)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.19 E-value=4.3e-05 Score=58.99 Aligned_cols=95 Identities=8% Similarity=0.035 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH-HHHHHH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ-VHFQML 477 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~ 477 (542)
....-.+...+...|++++|..+|+.+.. +.| +..-|..|.-++...|++++|+..|.++....+ .++ ..+.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~~~~~ag 110 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHH
Confidence 33344455666788999999999988887 446 446677788888888999999999999888772 333 333488
Q ss_pred HHHhccCChHHHHHHHHHHhc
Q 038401 478 SLYGARKDFNMLESLFERLDS 498 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~ 498 (542)
.++...|+.+.|++.|+....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888899999999998888543
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.18 E-value=7.1e-05 Score=57.78 Aligned_cols=98 Identities=9% Similarity=-0.029 Sum_probs=79.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLRE 450 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 450 (542)
+...+...|++++|..+|+.....+ +.+..-|-.|..++-..|++.+|+..|..+...+. -|+..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 3455677899999999999988764 35677888899999999999999999999998542 256788888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCch
Q 038401 451 FETADDLYSEMQEEGCVFSD 470 (542)
Q Consensus 451 ~~~A~~~~~~~~~~~~~~~~ 470 (542)
.+.|++.|+.++......|.
T Consensus 119 ~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 119 VCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHHHHHHHHHHhccChh
Confidence 99999999999886533343
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=4.2e-06 Score=46.89 Aligned_cols=33 Identities=39% Similarity=0.692 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 038401 20 FAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAP 52 (542)
Q Consensus 20 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 52 (542)
.+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=1.4e-05 Score=67.62 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=70.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCch-HHHHH-HHHHHhc
Q 038401 406 MIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSD-QVHFQ-MLSLYGA 482 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~-l~~~~~~ 482 (542)
=+.-+.+.++|++|+..|.++++ +.| |...|..=..+|.+.|.++.|++-.+.++..+ |. ...|. |+.+|..
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHc
Confidence 35556778888899988888888 556 45666777778888899999988888888876 43 33444 8888888
Q ss_pred cCChHHHHHHHHH-HhcCCCC
Q 038401 483 RKDFNMLESLFER-LDSDSNI 502 (542)
Q Consensus 483 ~g~~~~A~~~~~~-~~~~~~~ 502 (542)
.|++++|++.|++ +..+|..
T Consensus 162 ~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCc
Confidence 8999999888888 5666663
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=3.8e-05 Score=65.16 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=53.9
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHH
Q 038401 375 LARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFET 453 (542)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 453 (542)
+.+.+++.+|+..|.++++.. +.|++.|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 344566666666666666652 34555566666666666666666666666665 44533 566666666666666666
Q ss_pred HHHHHHHHHHcC
Q 038401 454 ADDLYSEMQEEG 465 (542)
Q Consensus 454 A~~~~~~~~~~~ 465 (542)
|++.|+++++..
T Consensus 168 A~~aykKaLeld 179 (304)
T KOG0553|consen 168 AIEAYKKALELD 179 (304)
T ss_pred HHHHHHhhhccC
Confidence 666666666654
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=6.9e-06 Score=46.42 Aligned_cols=33 Identities=42% Similarity=0.678 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCC
Q 038401 21 AYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPD 53 (542)
Q Consensus 21 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 53 (542)
+||++|.+|++.|++++|.++|+.|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777765
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.07 E-value=6.1e-05 Score=54.71 Aligned_cols=92 Identities=13% Similarity=0.145 Sum_probs=50.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHhh
Q 038401 440 LVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDS-DSNINKKELHHVVAGIYERA 518 (542)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 518 (542)
.++..+...|++++|...++++.+..+. .....+.++.++...|++++|.+.+++... .+. ....+..++.++...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chhHHHHHHHHHHHH
Confidence 3444555566666666666666554411 111222255666666666666666666332 222 224566666666666
Q ss_pred cchhhHHHHHHHHHhc
Q 038401 519 NRLNDASRIMNRMNKR 534 (542)
Q Consensus 519 g~~~~A~~~~~~~~~~ 534 (542)
|++++|...+.+..+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 6666666666665543
No 153
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.06 E-value=0.0017 Score=51.06 Aligned_cols=126 Identities=12% Similarity=0.096 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHH
Q 038401 365 TIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP---DSHIIALV 441 (542)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l 441 (542)
....-.+...+...|+..+|...|++...--...|+...-.+..+....+++.+|...++++.+.. | ++.+-..+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~ 166 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLF 166 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHH
Confidence 333445677777788888888888887765555677777777777777788888888888777642 2 22344456
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH
Q 038401 442 LNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 495 (542)
.+.+...|++++|+..|+.+.... |...... ....+.++|+.++|..-+..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 677777788888888888877765 4444444 56666677766666544433
No 154
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.06 E-value=0.00011 Score=67.53 Aligned_cols=121 Identities=15% Similarity=0.112 Sum_probs=66.2
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHH
Q 038401 191 PLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKM--GIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYN 268 (542)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 268 (542)
+.+......++..+....+.+.+..++.+.... ....-..|..++++.|...|..+.++.++..=...|+.||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555555555543 111122333456666666666666666666666666666666666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038401 269 TMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGK 311 (542)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 311 (542)
.|+..+.+.|++..|.++...|..++...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666665555544455555444444443
No 155
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.0029 Score=56.40 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=61.8
Q ss_pred HHHhCCHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCc
Q 038401 375 LARAGRIEEATWVFRQAFDAGE---VKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLRE 450 (542)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 450 (542)
..+.|++..|.+.|..++...+ .++...|.....+..+.|+.++|+.-.+..++ +.|.. ..+..-..++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888876432 34455666666777788888888888888877 33322 333344456667788
Q ss_pred HHHHHHHHHHHHHcC
Q 038401 451 FETADDLYSEMQEEG 465 (542)
Q Consensus 451 ~~~A~~~~~~~~~~~ 465 (542)
|++|.+.|+++.+..
T Consensus 337 ~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHhhc
Confidence 888888888887765
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=0.00014 Score=55.35 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHH
Q 038401 369 ETAITILARAGRIEEATWVFRQAFDAGEV--KDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD----SHIIALVL 442 (542)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~ 442 (542)
...+..+.+.|++++|.+.|+++++.... .....+..++.++...|+++.|...|+.+.... |+ ...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHH
Confidence 34455667778888888888888765321 124566678888889999999999999888742 33 45677778
Q ss_pred HHHhccCcHHHHHHHHHHHHHcC
Q 038401 443 NSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.++.+.|++++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 88888999999999999998876
No 157
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=1e-05 Score=45.68 Aligned_cols=33 Identities=45% Similarity=0.659 Sum_probs=17.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 038401 126 AYNTMINVFGKAKLFKEARLLIEEMREQGVKPD 158 (542)
Q Consensus 126 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 158 (542)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555555444
No 158
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.01 E-value=0.0002 Score=65.94 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=59.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhHhC--CCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038401 88 DLVLYSNLIELARKLSDYSKAISIFSRLKSS--GIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTL 165 (542)
Q Consensus 88 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 165 (542)
+......++..+....+++.+..++-+.... ....-+.|..++++.|...|..+.+..+++.=..-|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444444444444445555555555555433 11112333445555555555555555555555555555555555555
Q ss_pred HHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 038401 166 LNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYG 205 (542)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 205 (542)
++.+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555555544444444444444444433
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.0015 Score=58.16 Aligned_cols=87 Identities=10% Similarity=-0.014 Sum_probs=67.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHh
Q 038401 407 IELFSRNKKYANVIEVFEKMRSA---GYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ--MLSLYG 481 (542)
Q Consensus 407 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~ 481 (542)
..-..+.|++..|.+.|.+.+.. +..|+...|........+.|+.++|+.-.+.+++.+ |...... -+.++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHH
Confidence 44456889999999999999873 233445667777777889999999999999999865 4444333 567788
Q ss_pred ccCChHHHHHHHHHH
Q 038401 482 ARKDFNMLESLFERL 496 (542)
Q Consensus 482 ~~g~~~~A~~~~~~~ 496 (542)
..+++++|.+-+++.
T Consensus 333 ~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999999994
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.99 E-value=0.0048 Score=53.29 Aligned_cols=58 Identities=19% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhH---HHHHHHHHhcCCHHHHHHHHHHhHhC
Q 038401 60 LITCFGKEGMFDSAISWLQQMEQDRVSGDLVLY---SNLIELARKLSDYSKAISIFSRLKSS 118 (542)
Q Consensus 60 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 118 (542)
....+...|++++|++.|+.+....+.+ ...- -.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344455677777777777776653322 2221 33456666777777777777777665
No 161
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1.2e-05 Score=44.94 Aligned_cols=32 Identities=44% Similarity=0.622 Sum_probs=15.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC
Q 038401 126 AYNTMINVFGKAKLFKEARLLIEEMREQGVKP 157 (542)
Q Consensus 126 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 157 (542)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.99 E-value=7e-05 Score=68.92 Aligned_cols=104 Identities=10% Similarity=0.051 Sum_probs=80.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhc
Q 038401 405 CMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGA 482 (542)
Q Consensus 405 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 482 (542)
..+..+...|++++|+..|+++++. .| +...|..+..+|.+.|++++|+..++++++.. +.....+. ++.+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHH
Confidence 3456677889999999999999984 45 56788888999999999999999999999987 22333344 8999999
Q ss_pred cCChHHHHHHHHH-HhcCCCCCchhHHHHHHHH
Q 038401 483 RKDFNMLESLFER-LDSDSNINKKELHHVVAGI 514 (542)
Q Consensus 483 ~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~ 514 (542)
.|++++|+..+++ +...|+ .......+..+
T Consensus 83 lg~~~eA~~~~~~al~l~P~--~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPG--DSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Confidence 9999999999999 455555 33444444443
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.98 E-value=3.7e-05 Score=50.91 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=37.7
Q ss_pred HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 476 MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
++..+...|++++|++.++++.... +....++..++.++...|++++|..+|+++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556667777777777777743322 2255667777777777777777777777766544
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.97 E-value=0.00022 Score=58.31 Aligned_cols=89 Identities=17% Similarity=0.110 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-H
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD--SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-M 476 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l 476 (542)
...+..++..+...|++++|...|++.++....+. ...+..++.++.+.|++++|...++++++.. +.+...+. +
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 44566667777777888888888887776432221 3566677777777888888888888777764 11222222 6
Q ss_pred HHHHhccCChHHHH
Q 038401 477 LSLYGARKDFNMLE 490 (542)
Q Consensus 477 ~~~~~~~g~~~~A~ 490 (542)
+.++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66676666544444
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.95 E-value=0.00018 Score=62.45 Aligned_cols=84 Identities=8% Similarity=0.110 Sum_probs=40.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH-HHH-HHHHHHhccC
Q 038401 411 SRNKKYANVIEVFEKMRSAGYFPDS----HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ-VHF-QMLSLYGARK 484 (542)
Q Consensus 411 ~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~~g 484 (542)
.+.|++++|+..|+.+++. .|+. ..+..++.+|...|++++|...|+.+++..+..|.. ..+ .++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 4445555555555555542 2322 234445555555555555555555555544222211 111 1445555555
Q ss_pred ChHHHHHHHHHH
Q 038401 485 DFNMLESLFERL 496 (542)
Q Consensus 485 ~~~~A~~~~~~~ 496 (542)
+.++|.+.++++
T Consensus 232 ~~~~A~~~~~~v 243 (263)
T PRK10803 232 DTAKAKAVYQQV 243 (263)
T ss_pred CHHHHHHHHHHH
Confidence 555555555553
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.94 E-value=0.00031 Score=64.73 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=81.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccC
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLR 449 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 449 (542)
-...+...|+++.|++.|+++++.. +.+...|..+..+|...|++++|+..++++++. .| +...|..++.+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 3556778899999999999999974 357888999999999999999999999999984 46 5678888999999999
Q ss_pred cHHHHHHHHHHHHHcC
Q 038401 450 EFETADDLYSEMQEEG 465 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~ 465 (542)
++++|+..|+++++.+
T Consensus 85 ~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 85 EYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999987
No 167
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.93 E-value=0.013 Score=52.01 Aligned_cols=276 Identities=14% Similarity=0.132 Sum_probs=141.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH--HHhcCcHHHHHHHHHHHHhcCCCCcHHH--HHHHHHHHHccCCHH
Q 038401 206 QLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRV--YGEAELFGEAIHLFRLMQRKEIEQNVVT--YNTMIKIYGKSLEHE 281 (542)
Q Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 281 (542)
-.|+-..|.++-.+..+. +..|....-.++.+ -.-.|+++.|.+-|+.|... |.... ...|.-.-.+.|..+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 456666676665554422 13344444444433 33467888888888888752 22221 222222334567777
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHH--HHHHHHHH---HcCCHHHHH
Q 038401 282 KATNLMQEMQNRGIEP-NAITYSTIIAIWGKAGKLDRAAMLFQKLRSSG-VEIDPVLY--QTMIVAYE---RVGLVAHAK 354 (542)
Q Consensus 282 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~l~~~~~---~~~~~~~a~ 354 (542)
.|..+-+..-.. .| -...+...+...+..|+|+.|+++++.-.... +.++..-- ..|+.+-. -..+...|.
T Consensus 172 aAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 777777666544 23 23556677777777888888888877655432 22222111 11221111 122344454
Q ss_pred HHHHHhcC--CCCCCHHH-HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 038401 355 RLLHELRQ--PNTIPRET-AITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA-G 430 (542)
Q Consensus 355 ~~~~~~~~--~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 430 (542)
..-.+..+ ++..+-.. ...++.+.|+..++-.+++.+-+.. |.+..+..++ +.+.| +.++.-+++..+. .
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~g--dta~dRlkRa~~L~s 323 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSG--DTALDRLKRAKKLES 323 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCC--CcHHHHHHHHHHHHh
Confidence 44444333 33333222 2455666677777777776666643 3333322211 22333 3333333333321 2
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhc-cCChHHHHHHHHHH
Q 038401 431 YFPDS-HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGA-RKDFNMLESLFERL 496 (542)
Q Consensus 431 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~-~g~~~~A~~~~~~~ 496 (542)
++||. .+...+..+-...|++..|..--+.+.+.. |....|. ++.+-.. .|+-.++..++-+.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~---pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA---PRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC---chhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 44533 455556666666666666666666665543 5555554 5555443 36666666666664
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.92 E-value=0.0041 Score=53.71 Aligned_cols=58 Identities=10% Similarity=0.231 Sum_probs=44.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHhcC-CCCC-chhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 475 QMLSLYGARKDFNMLESLFERLDSD-SNIN-KKELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
.++..|.+.|.+..|+.-++.+..+ |+.. ..++...++..|...|..++|.+......
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3778899999999999888886443 3322 24778889999999999999988876654
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00028 Score=51.07 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=39.2
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 038401 374 ILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFET 453 (542)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 453 (542)
.+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.+++..+.. +.+..++..++..+...|++++
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHH
Confidence 3344445555555555444432 1223344444444445555555555555544421 1122344444444444555555
Q ss_pred HHHHHHHHHH
Q 038401 454 ADDLYSEMQE 463 (542)
Q Consensus 454 A~~~~~~~~~ 463 (542)
|...+....+
T Consensus 87 a~~~~~~~~~ 96 (100)
T cd00189 87 ALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHc
Confidence 5555544443
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.89 E-value=0.00063 Score=60.36 Aligned_cols=131 Identities=16% Similarity=0.162 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 038401 20 FAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITC-FGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIEL 98 (542)
Q Consensus 20 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (542)
.+|..+++..-|.+..+.|..+|.+..+.+. .+..+|...... +...++.+.|.++|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688888999999999999999999986532 244455544444 33356777799999998876 55678888888898
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCccH---hHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038401 99 ARKLSDYSKAISIFSRLKSSGIVPDL---VAYNTMINVFGKAKLFKEARLLIEEMREQ 153 (542)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 153 (542)
+...++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998866 33332 47888888888888888888888888775
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.87 E-value=0.0034 Score=55.99 Aligned_cols=199 Identities=18% Similarity=0.236 Sum_probs=103.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038401 271 IKIYGKSLEHEKATNLMQEMQNRGI---EPN--AITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYE 345 (542)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 345 (542)
...|-..+++++|.+.|.+..+... .+. ...|.....++.+ .+++.|...++.. +..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A---------------~~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKA---------------IEIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHH---------------HHHHH
Confidence 3345556666666666655432200 000 1122222233322 2555555544443 34566
Q ss_pred HcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHh-CCHHHHHHHHHHHHHcCC---Cc--CHHHHHHHHHHHHhcCCHHHH
Q 038401 346 RVGLVAHAKRLLHELRQPNTIPRETAITILARA-GRIEEATWVFRQAFDAGE---VK--DISVFGCMIELFSRNKKYANV 419 (542)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A 419 (542)
..|++..|-+.+..+ ...|... |+++.|++.|+++.+.-. .+ -...+..++..+.+.|++++|
T Consensus 106 ~~G~~~~aA~~~~~l-----------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 106 EAGRFSQAAKCLKEL-----------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HCT-HHHHHHHHHHH-----------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred hcCcHHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 777777777666553 3455555 778888888877764311 11 134556677778888899999
Q ss_pred HHHHHHHHhCCCC-----CCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC--CchHHHHH--HHHHHhc--cCChH
Q 038401 420 IEVFEKMRSAGYF-----PDS-HIIALVLNSYGKLREFETADDLYSEMQEEGCV--FSDQVHFQ--MLSLYGA--RKDFN 487 (542)
Q Consensus 420 ~~~~~~~~~~~~~-----p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~--l~~~~~~--~g~~~ 487 (542)
+++|+++...... .+. ..+...+-++...|+...|.+.+++.....+. .+....+. ++.++-. ...++
T Consensus 175 ~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~ 254 (282)
T PF14938_consen 175 IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFT 254 (282)
T ss_dssp HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHH
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence 9998888764221 112 22333344666778888888888888765421 12212222 5555543 33455
Q ss_pred HHHHHHHHH
Q 038401 488 MLESLFERL 496 (542)
Q Consensus 488 ~A~~~~~~~ 496 (542)
+|+.-|+.+
T Consensus 255 ~av~~~d~~ 263 (282)
T PF14938_consen 255 EAVAEYDSI 263 (282)
T ss_dssp HHCHHHTTS
T ss_pred HHHHHHccc
Confidence 555555554
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.87 E-value=0.00088 Score=49.99 Aligned_cols=91 Identities=10% Similarity=0.003 Sum_probs=61.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCc-h-HHHHHHHHHHh
Q 038401 406 MIELFSRNKKYANVIEVFEKMRSAGYFPD--SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFS-D-QVHFQMLSLYG 481 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~l~~~~~ 481 (542)
+..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..+++......+..+ + .....++-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566777888888888888887765543 24566677778888888888888888777642111 1 22222556777
Q ss_pred ccCChHHHHHHHHHH
Q 038401 482 ARKDFNMLESLFERL 496 (542)
Q Consensus 482 ~~g~~~~A~~~~~~~ 496 (542)
..|+.++|++++-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 788888888777653
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=0.004 Score=55.56 Aligned_cols=181 Identities=19% Similarity=0.288 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHH
Q 038401 314 KLDRAAMLFQKLRS-----SGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVF 388 (542)
Q Consensus 314 ~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (542)
+++.|...|.+.-. .....-...|.....++.+.++...|-..+..+ ..+ .+.+++++|.+.+
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~A-----------a~~-~k~~~~~~Ai~~~ 97 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEA-----------ANC-YKKGDPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH-----------HHH-HHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHH-HHhhCHHHHHHHH
Confidence 56666666655422 111112334444455555555555554444332 222 3334777777777
Q ss_pred HHHHHc----CCCcC--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhccCcHHHHH
Q 038401 389 RQAFDA----GEVKD--ISVFGCMIELFSRN-KKYANVIEVFEKMRSA----GYFPD--SHIIALVLNSYGKLREFETAD 455 (542)
Q Consensus 389 ~~~~~~----~~~~~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~ 455 (542)
+++.+. |. ++ ...+..+...|... |++++|++.|+++.+. + .+. ...+..++..+.+.|++++|.
T Consensus 98 ~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~ 175 (282)
T PF14938_consen 98 EKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAI 175 (282)
T ss_dssp HHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 776542 21 22 33556666677676 7888888888777642 2 121 245566677777788888888
Q ss_pred HHHHHHHHcCCCCc----hH-HHHH-HHHHHhccCChHHHHHHHHHH-hcCCCCCchhHH
Q 038401 456 DLYSEMQEEGCVFS----DQ-VHFQ-MLSLYGARKDFNMLESLFERL-DSDSNINKKELH 508 (542)
Q Consensus 456 ~~~~~~~~~~~~~~----~~-~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~ 508 (542)
++|+++.......+ .. ..+. .+-++...|+.-.|...+++. ..+|....+.-+
T Consensus 176 ~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 176 EIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 88887776432111 11 1222 344566677888888888874 344555555333
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.86 E-value=0.0082 Score=47.38 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC-----CCCCHHH
Q 038401 296 EPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQP-----NTIPRET 370 (542)
Q Consensus 296 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 370 (542)
.|+...-..|..++...|+..+|...|++...--+-.|......+.++....+++..|...++++.+- .+.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 56666666677777777888888777777776555567777777777777777777777777766542 2222333
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVI 420 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 420 (542)
+...+...|++..|...|+.++.. -|++..-......+.++|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 344455555555555555555543 233333333334444455444443
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.84 E-value=0.00036 Score=49.85 Aligned_cols=75 Identities=20% Similarity=0.414 Sum_probs=42.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCC-CccHhHHHHHHHHHhccC--------cHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038401 96 IELARKLSDYSKAISIFSRLKSSGI-VPDLVAYNTMINVFGKAK--------LFKEARLLIEEMREQGVKPDTVSYSTLL 166 (542)
Q Consensus 96 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 166 (542)
|..+...+++...-.+|+.++..|+ .|+..+|+.++.+.++.. +.-..+.+++.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3444444555566666666666555 556666666555544322 2334555666666666666666666666
Q ss_pred HHHH
Q 038401 167 NLYV 170 (542)
Q Consensus 167 ~~~~ 170 (542)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5554
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.82 E-value=0.0013 Score=63.43 Aligned_cols=57 Identities=7% Similarity=0.068 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH
Q 038401 436 HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 495 (542)
..+..+.-.+...|++++|...++++++.+ |+...+. ++.++...|+.++|.+.+++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444444555555555555555554 2222233 55555555555555555555
No 177
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.82 E-value=0.00016 Score=48.56 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccC-cHHHHHHHHHHHHHcC
Q 038401 399 DISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD-SHIIALVLNSYGKLR-EFETADDLYSEMQEEG 465 (542)
Q Consensus 399 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 465 (542)
++..|..++..+...|++++|+..|++.++. .|+ ...|..+..+|...| ++++|++.++++++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3456666677777777777777777777763 353 356666666777777 5777777777766644
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.0015 Score=53.42 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038401 20 FAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPD--RYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIE 97 (542)
Q Consensus 20 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 97 (542)
..+..+...+.+.|++++|...|++..+.+..+. ...+..+...+.+.|++++|+..+++..+..+ .+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3456666667777777777777777766433222 34666777777777777777777777766532 24455555666
Q ss_pred HHHhcCCHHHH
Q 038401 98 LARKLSDYSKA 108 (542)
Q Consensus 98 ~~~~~~~~~~a 108 (542)
++...|+...+
T Consensus 115 ~~~~~g~~~~a 125 (172)
T PRK02603 115 IYHKRGEKAEE 125 (172)
T ss_pred HHHHcCChHhH
Confidence 66666654443
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.77 E-value=0.0014 Score=58.23 Aligned_cols=128 Identities=11% Similarity=0.118 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHH---HHHHHH-hCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 038401 336 LYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETA---ITILAR-AGRIEEATWVFRQAFDAGEVKDISVFGCMIELFS 411 (542)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 411 (542)
+|..+++...+.+..+.|..+|.+..+.....+... +..-.+ .++.+.|..+|+..++. .+.+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 344444444444445555555554443322222221 122122 34444466666666655 4456666777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 412 RNKKYANVIEVFEKMRSAGYFPDS---HIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 412 ~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
..|+.+.|..+|++.+.. +.++. ..|...+.-=.+.|+.+...++.+++.+..
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777777777777777653 22221 366666666666677777777777766653
No 180
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0012 Score=56.67 Aligned_cols=114 Identities=6% Similarity=0.006 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CcHHHHHH
Q 038401 380 RIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKL---REFETADD 456 (542)
Q Consensus 380 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~ 456 (542)
..+....-++.-+..+ +.|...|-.|...|...|+++.|...|.+..+.. .++...+..+..++..+ ....++..
T Consensus 137 ~~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 4555566666666653 4688889999999999999999999999988732 13556677777666432 34678889
Q ss_pred HHHHHHHcCCCCchHHHHH--HHHHHhccCChHHHHHHHHHHhc
Q 038401 457 LYSEMQEEGCVFSDQVHFQ--MLSLYGARKDFNMLESLFERLDS 498 (542)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 498 (542)
.++++++.+ |+++... ++..+...|++.+|...++.|..
T Consensus 215 ll~~al~~D---~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 215 LLRQALALD---PANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 999998876 4443333 77888899999999999998644
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.044 Score=52.67 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=13.9
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHH
Q 038401 192 LDLTTCNIMIDVYGQLDMAKDADRLF 217 (542)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 217 (542)
.+....-.+...+...|.-++|.+.+
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHH
Confidence 34444555555555556555555544
No 182
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=0.045 Score=52.62 Aligned_cols=205 Identities=11% Similarity=0.112 Sum_probs=111.7
Q ss_pred CccHhHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCC
Q 038401 121 VPDLVAYNTMINVFGKAKLFKEARLLIEEMREQ-GVKP--------DTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCP 191 (542)
Q Consensus 121 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 191 (542)
.|.+..|..+.......-.++.|+..|-+...- |++. +...-.+=+. .--|++++|.++|-++-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 577788888887777777777777766554431 2210 0011111122 22478888888887775543
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHH
Q 038401 192 LDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPS----VVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTY 267 (542)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 267 (542)
..+..+.+.|++-...++++.- |-..| ...|+.+...+.....+++|.+.|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 2345566667776655554321 11111 235666666666666677776666543211
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 038401 268 NTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERV 347 (542)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (542)
...+.++.+..++++...+...+ +-++...-.+..++.+.|--++|.+.|-+.. . | .+.+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHH
Confidence 12344555544454444333332 3345556666677777777777766653321 1 1 2345566667
Q ss_pred CCHHHHHHHHHHhcC
Q 038401 348 GLVAHAKRLLHELRQ 362 (542)
Q Consensus 348 ~~~~~a~~~~~~~~~ 362 (542)
++|.+|.++-+...-
T Consensus 892 nQW~~avelaq~~~l 906 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQL 906 (1189)
T ss_pred HHHHHHHHHHHhccc
Confidence 777777776665543
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.74 E-value=0.00097 Score=49.78 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=71.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCchHH-HHH-HHHHHhccCChHHHHHHHHHHhcC-CCCC-chhHHHHHHHHH
Q 038401 440 LVLNSYGKLREFETADDLYSEMQEEGCVFSDQV-HFQ-MLSLYGARKDFNMLESLFERLDSD-SNIN-KKELHHVVAGIY 515 (542)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~-l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~ 515 (542)
....++-..|+.++|+.+|+++...+...+... .+. ++..+...|++++|..++++.... |+.. +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 456788899999999999999999874444322 223 889999999999999999995433 4311 234455567788
Q ss_pred HhhcchhhHHHHHHHHHh
Q 038401 516 ERANRLNDASRIMNRMNK 533 (542)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~ 533 (542)
...|+.++|++.+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999998876543
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.73 E-value=0.0014 Score=53.30 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP--DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQML 477 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 477 (542)
...|..++..+...|++++|+..|++.+.....| ...++..+..++...|++++|+..++++.+.....+ .....++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~-~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP-QALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Confidence 4556666777777788888888888887642222 124677777788888888888888888877642111 1122255
Q ss_pred HHHh-------ccCChHHHHHHHH
Q 038401 478 SLYG-------ARKDFNMLESLFE 494 (542)
Q Consensus 478 ~~~~-------~~g~~~~A~~~~~ 494 (542)
.++. ..|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 6677665544443
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=0.00024 Score=46.96 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=27.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 408 ELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 408 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
..+...|++++|+..|+++++.. | +...+..++.++...|++++|...|+++++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445555555555555555432 3 23444455555555555555555555555443
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.00067 Score=55.25 Aligned_cols=113 Identities=9% Similarity=-0.015 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH--HHHHHHHHHhccCChHHHHHH
Q 038401 416 YANVIEVFEKMRSA-GYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ--VHFQMLSLYGARKDFNMLESL 492 (542)
Q Consensus 416 ~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 492 (542)
+..+...+..+.+. +..-....+..++..+...|++++|...|+++......++.. .+..++.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444444444322 211124567778888889999999999999998875322222 233389999999999999999
Q ss_pred HHHHh-cCCCCCchhHHHHHHHHHH-------hhcchhhHHHHHHH
Q 038401 493 FERLD-SDSNINKKELHHVVAGIYE-------RANRLNDASRIMNR 530 (542)
Q Consensus 493 ~~~~~-~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 530 (542)
+++.. ..|. ....+..++.+|. ..|++++|...+++
T Consensus 95 ~~~Al~~~~~--~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERNPF--LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhCcC--cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99954 3333 3455667777776 88888766555554
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.72 E-value=0.01 Score=49.96 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=46.0
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhcC-CCCCc-hhHHHHHHHHHHhhcchhhH
Q 038401 447 KLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDSD-SNINK-KELHHVVAGIYERANRLNDA 524 (542)
Q Consensus 447 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A 524 (542)
......+|...+..+.+. -....+.++..|.+.|.+..|..-++.+..+ |+... ..+...++..|.+.|..+.|
T Consensus 122 ~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 122 NSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 334444554444444331 1112333788899999999999999996444 44322 36788899999999988754
Q ss_pred H
Q 038401 525 S 525 (542)
Q Consensus 525 ~ 525 (542)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.72 E-value=0.00023 Score=47.75 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=28.0
Q ss_pred HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhc-chhhHHHHHHHHHh
Q 038401 476 MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERAN-RLNDASRIMNRMNK 533 (542)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 533 (542)
++..+...|++++|+..|++ +..+|+ ...+|..++.+|...| ++++|++.+++..+
T Consensus 9 ~g~~~~~~~~~~~A~~~~~~ai~~~p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 9 LGQIYFQQGDYEEAIEYFEKAIELDPN--NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 44555555555555555555 333332 3445555555555555 45555555555443
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.72 E-value=0.00071 Score=48.42 Aligned_cols=76 Identities=11% Similarity=0.296 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHhccC--------CHHHHHHHHHHHHhCCCCCCHHhHH
Q 038401 23 NVVLRNVLRAKQWELAHGLFDEMRQRGI-APDRYTYSTLITCFGKEG--------MFDSAISWLQQMEQDRVSGDLVLYS 93 (542)
Q Consensus 23 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 93 (542)
...|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555556777777777777777776 667777777776655422 1223334444444444444444444
Q ss_pred HHHHH
Q 038401 94 NLIEL 98 (542)
Q Consensus 94 ~l~~~ 98 (542)
.++..
T Consensus 109 ivl~~ 113 (120)
T PF08579_consen 109 IVLGS 113 (120)
T ss_pred HHHHH
Confidence 44443
No 190
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.71 E-value=0.036 Score=50.36 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH--HH
Q 038401 401 SVFGCMIELFSRNKKYANVIEVFEKMRSAG-YFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ--ML 477 (542)
Q Consensus 401 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~ 477 (542)
.+|..++....+....+.|..+|-++.+.+ +.++..++++++.- ...|+...|-.+|+.-.... |+...+. .+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~-~~~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEY-YATGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHH-HhcCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 456667777777788899999999998887 45677777777754 45688899999999888765 4444444 77
Q ss_pred HHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 478 SLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
..+.+-++-+.|..+|++ ++.-....-..+|-.+++-=..-|+.+.+..+-++|.+.-
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 788888999999999995 2221111234678777777677788888888888776643
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.71 E-value=0.00061 Score=59.23 Aligned_cols=90 Identities=8% Similarity=-0.003 Sum_probs=46.3
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHhccCChHHHHHHHHHHhc-CCCCC-chhHHHHHHHHHHhhcch
Q 038401 446 GKLREFETADDLYSEMQEEGCVFS--DQVHFQMLSLYGARKDFNMLESLFERLDS-DSNIN-KKELHHVVAGIYERANRL 521 (542)
Q Consensus 446 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~ 521 (542)
.+.|++++|...|+.+++..+..+ ....+.++.+|...|++++|...|+++.. .|+.. ...++..++.+|...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444566666666666665542211 12333355666666666666666666432 22211 134455555666666666
Q ss_pred hhHHHHHHHHHhcC
Q 038401 522 NDASRIMNRMNKRR 535 (542)
Q Consensus 522 ~~A~~~~~~~~~~~ 535 (542)
++|.++|+++.+..
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 66666666555544
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.0039 Score=60.25 Aligned_cols=86 Identities=9% Similarity=-0.107 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 038401 382 EEATWVFRQAFDA-GEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSE 460 (542)
Q Consensus 382 ~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (542)
..+.+..++.... ..+.++..+..+.......|++++|...++++++ ..|+...|..++..+...|+.++|...|++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444445554442 1334567788887777788999999999999998 448888999999999999999999999999
Q ss_pred HHHcCCCCc
Q 038401 461 MQEEGCVFS 469 (542)
Q Consensus 461 ~~~~~~~~~ 469 (542)
+.+.++..|
T Consensus 479 A~~L~P~~p 487 (517)
T PRK10153 479 AFNLRPGEN 487 (517)
T ss_pred HHhcCCCCc
Confidence 999884444
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0016 Score=56.00 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=84.7
Q ss_pred CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCC-CHHHH
Q 038401 363 PNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRN---KKYANVIEVFEKMRSAGYFP-DSHII 438 (542)
Q Consensus 363 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p-~~~~~ 438 (542)
.+...|..+...|...|+++.|...|.++.+. .++++..+..+..++..+ ....++..+|++++.. +| |..+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 46667888888888889999999999999886 346788888888887644 3466888999999984 46 55777
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHH
Q 038401 439 ALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHF 474 (542)
Q Consensus 439 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 474 (542)
..+...+...|++.+|...|+.|++.. +|+....
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr 264 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRR 264 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchH
Confidence 788889999999999999999999986 4444443
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.66 E-value=0.00039 Score=61.62 Aligned_cols=132 Identities=13% Similarity=0.108 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CC-CCchH
Q 038401 402 VFGCMIELFSRNKKYANVIEVFEKMR----SAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEE----GC-VFSDQ 471 (542)
Q Consensus 402 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 471 (542)
.|..|...|.-.|+++.|+...+.=+ +.|-+. ....+..+.+++.-.|+++.|.+.|+..... +. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666666778888876654322 223222 2245667777788888888888888765432 21 12233
Q ss_pred HHHHHHHHHhccCChHHHHHHHHH-H--hcC--CCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 472 VHFQMLSLYGARKDFNMLESLFER-L--DSD--SNINKKELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~-~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
..|.++..|.-...+++|+.++++ + ... .-....-++..|+..|-..|.-++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455577888778888888887777 2 111 0111234566788888888888888777666443
No 195
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=7.4e-05 Score=40.61 Aligned_cols=29 Identities=41% Similarity=0.692 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Q 038401 21 AYNVVLRNVLRAKQWELAHGLFDEMRQRG 49 (542)
Q Consensus 21 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 49 (542)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56677777777777777777777776655
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.65 E-value=0.00024 Score=47.47 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=24.3
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHH
Q 038401 447 KLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 447 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (542)
+.|++++|++.|+++....+ ......+.++.+|.+.|++++|.+.++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555666666666555541 11112222555666666666666666653
No 197
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=8e-05 Score=40.49 Aligned_cols=29 Identities=41% Similarity=0.690 Sum_probs=14.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 126 AYNTMINVFGKAKLFKEARLLIEEMREQG 154 (542)
Q Consensus 126 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 154 (542)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34455555555555555555555554443
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.63 E-value=0.00027 Score=47.22 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=24.4
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 377 RAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRS 428 (542)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 428 (542)
..|++++|++.|+++.+.. +.+...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555554442 22444444455555555555555555555544
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.56 E-value=0.019 Score=48.28 Aligned_cols=180 Identities=14% Similarity=0.151 Sum_probs=88.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 038401 24 VVLRNVLRAKQWELAHGLFDEMRQRGIA--PDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARK 101 (542)
Q Consensus 24 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (542)
.....+...|++.+|+..|+.+....+. --....-.++.++.+.|+++.|...++.+.+.-+......+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 4555667788899999999888875322 12345667777888889999999888888776333222223222222221
Q ss_pred cCCHHHHHHHHHHhHhCCCC---ccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHH
Q 038401 102 LSDYSKAISIFSRLKSSGIV---PDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEA 178 (542)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 178 (542)
....... + ....+.. .-...+..++.-|-.+....+|...+..+.+. =...--.+...|.+.|.+..|
T Consensus 90 ~~~~~~~---~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 90 YKQIPGI---L--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHH---H---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHH
T ss_pred HHhCccc---h--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHH
Confidence 1111100 0 0000000 01223444445555555555555555544432 111122345666777777777
Q ss_pred HHHHHHHHhcC--CCCChhhHHHHHHHHhccCCHHH
Q 038401 179 LSVFAEMNEVN--CPLDLTTCNIMIDVYGQLDMAKD 212 (542)
Q Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 212 (542)
..-++.+.+.= .+........++.++.+.|..+.
T Consensus 161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 77777766642 11112334555566666666553
No 200
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.54 E-value=0.0047 Score=59.17 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=81.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCcHHHHHHHHHHHHHcCCCCch--HH-HHHHHHHHhccCChHH
Q 038401 413 NKKYANVIEVFEKMRSAGYFPDSHIIAL-VLNSYGKLREFETADDLYSEMQEEGCVFSD--QV-HFQMLSLYGARKDFNM 488 (542)
Q Consensus 413 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~-~~~l~~~~~~~g~~~~ 488 (542)
..+.+.|.++++.+.+ .-|+...|.. -.+.+...|+.++|++.|+++.......+. .. .+.+++++.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4567778888888877 3476655543 345666788888888888876642211121 12 2237788888888888
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHhhcch-------hhHHHHHHHHHh
Q 038401 489 LESLFERLDSDSNINKKELHHVVAGIYERANRL-------NDASRIMNRMNK 533 (542)
Q Consensus 489 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~ 533 (542)
|...+..+......+....++..+-++...|+. ++|.+++++++.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888877665555556666667777778887 888888888665
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.53 E-value=0.001 Score=51.85 Aligned_cols=93 Identities=11% Similarity=-0.008 Sum_probs=71.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCCh
Q 038401 407 IELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDF 486 (542)
Q Consensus 407 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 486 (542)
..-+...|++++|..+|+-+.-.+. -+..-|..|..++-..+++++|+..|..+.......| .+.+..+.++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp-~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY-RPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CccchHHHHHHHhCCH
Confidence 3345688999999999998877432 2566778888888889999999999999887653222 2355589999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 038401 487 NMLESLFERLDSDSN 501 (542)
Q Consensus 487 ~~A~~~~~~~~~~~~ 501 (542)
++|+..|+.....|.
T Consensus 122 ~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 122 AKARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999999766543
No 202
>PRK15331 chaperone protein SicA; Provisional
Probab=97.53 E-value=0.0041 Score=48.51 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=55.5
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 038401 375 LARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETA 454 (542)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 454 (542)
+...|++++|..+|+-+.-.++ -+...|..|..++-..+++++|+..|......+. -|+...-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3456777777777777665433 4555666666667777777777777776654321 1233334456677777777777
Q ss_pred HHHHHHHHHc
Q 038401 455 DDLYSEMQEE 464 (542)
Q Consensus 455 ~~~~~~~~~~ 464 (542)
+..|+.+.+.
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 7777777763
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.48 E-value=0.017 Score=54.73 Aligned_cols=214 Identities=17% Similarity=0.177 Sum_probs=106.9
Q ss_pred HHHHHHHHccCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCHHHHHHHH
Q 038401 268 NTMIKIYGKSLEHE--KATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGV----EIDPVLYQTMI 341 (542)
Q Consensus 268 ~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~ 341 (542)
+..-++|.+-.+.. +.+.-++++.++|-.|+.... ...++-.|.+.+|.++|.+--..+- -.|...| -..
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~a 677 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYA 677 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHH
Confidence 33334454443332 333445666677766765432 2233444555555555543211100 0000001 112
Q ss_pred HHHHHcCCHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhCCHHHHHHHHH------HHHHcCC---CcCHHHHHHHHHHH
Q 038401 342 VAYERVGLVAHAKRLLHELRQ--PNTIPRETAITILARAGRIEEATWVFR------QAFDAGE---VKDISVFGCMIELF 410 (542)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~------~~~~~~~---~~~~~~~~~l~~~~ 410 (542)
+-+...|..++-..+.++-.. .+.........++...|+.++|..+.- .+++.+. ..+..+...+..-+
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~yl 757 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYL 757 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHH
Confidence 233444444443333322111 222333445566666777766665421 1222111 12344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-------------HH
Q 038401 411 SRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-------------ML 477 (542)
Q Consensus 411 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------------l~ 477 (542)
.+...+.-|.++|.+|-+ ..+++......++|.+|..+-++..+.- |+ +++. .-
T Consensus 758 k~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~---~d-Vy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFK---DD-VYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred hhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcccc---cc-ccchHHHHhhhhhhHHHHH
Confidence 566777788888887754 1246667788999999998887776642 21 1111 22
Q ss_pred HHHhccCChHHHHHHHHHHhc
Q 038401 478 SLYGARKDFNMLESLFERLDS 498 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~ 498 (542)
.+|.++|+-.||..+++++..
T Consensus 825 kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhh
Confidence 456677777777777777654
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.47 E-value=0.0049 Score=50.34 Aligned_cols=35 Identities=29% Similarity=0.610 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 038401 279 EHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAG 313 (542)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 313 (542)
+-+-|++++++|...|+.||..++..++..+.+.+
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 34566777777777777777777777777765444
No 205
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.46 E-value=0.085 Score=48.19 Aligned_cols=442 Identities=13% Similarity=0.128 Sum_probs=224.3
Q ss_pred HHHhcCHHHHHHHHHHHHhCCCCCCHH------hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH--HHH
Q 038401 29 VLRAKQWELAHGLFDEMRQRGIAPDRY------TYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIE--LAR 100 (542)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 100 (542)
+-+++++.+|.++|-++...- ..++. .-+.++++|. ..+.+.....+..+.+.. | ...|..+.. .+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 457889999999998886642 21222 3345666665 345666666666665542 2 223333333 345
Q ss_pred hcCCHHHHHHHHHHhHhC--CCCc------------cHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCC----CCCHHHH
Q 038401 101 KLSDYSKAISIFSRLKSS--GIVP------------DLVAYNTMINVFGKAKLFKEARLLIEEMREQGV----KPDTVSY 162 (542)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~ 162 (542)
+.+.+.+|.+.+..-.+. +..| |-..=+..+.++...|++.++..+++++...=. .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778899998888766544 2222 112224556778889999999999988876533 3577788
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhc-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 038401 163 STLLNLYVENHKFVEALSVFAEMNEV-NCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGE 241 (542)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 241 (542)
+.++-.+.+ ..|-++.+. ....-+. |..++-.|.+.= ..++.-.-..+.|.......++....-
T Consensus 171 d~~vlmlsr--------SYfLEl~e~~s~dl~pd-yYemilfY~kki------~~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSR--------SYFLELKESMSSDLYPD-YYEMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhH--------HHHHHHHHhcccccChH-HHHHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 776655543 223333221 1111112 222333332211 111111111123444444444433322
Q ss_pred c--CcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCC
Q 038401 242 A--ELFGEAIHLFRLMQRKEIEQNVV-TYNTMIKIYGKSLEHEKATNLMQEMQNRGIEP----NAITYSTIIAIWGKAGK 314 (542)
Q Consensus 242 ~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~ 314 (542)
. ....--.++++.....-+.|+.. ....+...+.+ +.+++..+.+.+....+.+ =..+|..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11222233333333333334322 22333333333 4455555444443321111 12456677777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHH-H---cCCHHHHHHHHHHhcCCCCCCH---HHH---HHHHHH
Q 038401 315 LDRAAMLFQKLRSSGVEIDPVLYQTM-------IVAYE-R---VGLVAHAKRLLHELRQPNTIPR---ETA---ITILAR 377 (542)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~-~---~~~~~~a~~~~~~~~~~~~~~~---~~l---~~~~~~ 377 (542)
...|.+.+..+...+ |+...-..+ .+..+ . ..+...-+.+++.+...+...- ..+ +.-+-+
T Consensus 314 T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 314 TEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh
Confidence 777777777665542 222211111 11111 0 1111222333333333222211 111 222334
Q ss_pred hCC-HHHHHHHHHHHHHcCCCcCHHHHHHHHH----HHHh---cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH--
Q 038401 378 AGR-IEEATWVFRQAFDAGEVKDISVFGCMIE----LFSR---NKKYANVIEVFEKMRSAGYFPD----SHIIALVLN-- 443 (542)
Q Consensus 378 ~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~-- 443 (542)
.|. -++|+.+++.+++- .+-|...-|.+.. +|.+ .....+-+.+-+-+.+.|+.|- ...-+.+.+
T Consensus 392 ~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred cCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 454 78889999988875 2345554444332 2222 2233333444444456677773 233444443
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhc
Q 038401 444 SYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDS 498 (542)
Q Consensus 444 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 498 (542)
-+...|++.++.-+-..+.+-. |.+..+. ++-++....++++|...+..++.
T Consensus 471 yLysqgey~kc~~ys~WL~~ia---PS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIA---PSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 3457899999888777777744 6666676 77888889999999999998865
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.44 E-value=0.0012 Score=58.67 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHH----cCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH---h-cCCCC-Cch
Q 038401 436 HIIALVLNSYGKLREFETADDLYSEMQE----EGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL---D-SDSNI-NKK 505 (542)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~---~-~~~~~-~~~ 505 (542)
..|..+.+.|.-.|+++.|+..-+.-++ .|........+. ++.++.-.|+++.|.+.+++. . .-++. ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4577778888888999999988765433 221111222333 889999999999999999882 1 11111 123
Q ss_pred hHHHHHHHHHHhhcchhhHHHHHHHH
Q 038401 506 ELHHVVAGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 531 (542)
...+.|+..|.-...+++|+.++.+=
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 55678999999999999999999873
No 207
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.44 E-value=0.089 Score=47.98 Aligned_cols=426 Identities=14% Similarity=0.136 Sum_probs=233.0
Q ss_pred hhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 038401 5 ILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDR 84 (542)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 84 (542)
+-+.+.+. +.|+.+|-.|++.+..+|..++..+++++|... .+--+.+|...+.+-....++.....+|.+.+...
T Consensus 31 LRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 31 LRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 34455432 567789999999999999999999999999874 33345688888888778889999999999988764
Q ss_pred CCCCHHhHHHHHHHHHhcCCHH------HHHHHHHHhHh-CCCCc-cHhHHHHHHHH---HhccC------cHHHHHHHH
Q 038401 85 VSGDLVLYSNLIELARKLSDYS------KAISIFSRLKS-SGIVP-DLVAYNTMINV---FGKAK------LFKEARLLI 147 (542)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~-~~~~~-~~~~~~~l~~~---~~~~~------~~~~a~~~~ 147 (542)
.+...|...+.-..+.+..- ...+.|+-... .++.| +...|+..+.. .-..| +.+.....+
T Consensus 107 --l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 --LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred --ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 34666666666544443211 12233443333 23333 22334433322 22223 345555566
Q ss_pred HHHHHcCCCCCHHHHH------HHHHHHH-H--CC----ChHHHHHHHHHHHh--cCC----CCChhhHHH---------
Q 038401 148 EEMREQGVKPDTVSYS------TLLNLYV-E--NH----KFVEALSVFAEMNE--VNC----PLDLTTCNI--------- 199 (542)
Q Consensus 148 ~~~~~~g~~~~~~~~~------~l~~~~~-~--~g----~~~~a~~~~~~~~~--~~~----~~~~~~~~~--------- 199 (542)
.++....+..-...|. .=+.-.. + .| -+-.|...++++.. .|. +.+..+++.
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 6665431111111111 1111000 0 11 13345555555532 121 112222222
Q ss_pred --HHHHHhcc-----CC-H-HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 038401 200 --MIDVYGQL-----DM-A-KDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTM 270 (542)
Q Consensus 200 --l~~~~~~~-----~~-~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 270 (542)
.|..-... ++ . ...--++++.... +.....+|----.-+...++-+.|++..+.-... .|+. ...+
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL--~~~l 339 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSL--TMFL 339 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCch--heeH
Confidence 22211111 11 1 1122223332221 1223333433333444556666666555433321 1221 1111
Q ss_pred HHHHHccCCHHHHHHHHHHHHH--------------cCC---------------CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038401 271 IKIYGKSLEHEKATNLMQEMQN--------------RGI---------------EPNAITYSTIIAIWGKAGKLDRAAML 321 (542)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~--------------~~~---------------~p~~~~~~~l~~~~~~~~~~~~a~~~ 321 (542)
...|--.++.+.....|+...+ .+. .-=...|...+....+...++.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 1112222222222222211100 000 01234566777777788889999999
Q ss_pred HHHHHhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC--CCCCC-HHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 038401 322 FQKLRSSG-VEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ--PNTIP-RETAITILARAGRIEEATWVFRQAFDAGEV 397 (542)
Q Consensus 322 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (542)
|.++.+.+ ..++..++++++..+ ..|+...|.++|+.-.. ++... ....+..+...++-+.|..+|+..++. +.
T Consensus 420 F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~ 497 (660)
T COG5107 420 FIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LE 497 (660)
T ss_pred HHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HH
Confidence 99999988 567888888888765 57888899999987543 33322 344567778899999999999977654 22
Q ss_pred cC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038401 398 KD--ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSY 445 (542)
Q Consensus 398 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 445 (542)
.+ ...|..++.--..-|+...+..+-+++.. +.|...+.......|
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 33 56788888888888999999988888887 446554444444333
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.41 E-value=0.023 Score=51.51 Aligned_cols=163 Identities=14% Similarity=0.083 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCC-------CCCHHHHHHHHHH---hCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 038401 335 VLYQTMIVAYERVGLVAHAKRLLHELRQPN-------TIPRETAITILAR---AGRIEEATWVFRQAFDAGEVKDISVFG 404 (542)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ 404 (542)
.+...++-+|....+++..+++.+.+.... +..-...+-++.+ .|+.++|++++..++.....+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455556777777777777777776531 1111123445555 788888888888866666678888888
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc----HHHHHHHH----HHHHHcCCC
Q 038401 405 CMIELFSR---------NKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLRE----FETADDLY----SEMQEEGCV 467 (542)
Q Consensus 405 ~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~----~~~~~~~~~ 467 (542)
.++..|-. ....++|+..|.+.-+ +.|+..+-..++..+...|. ..+..++- ..+.+++..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88876632 2246778888887776 44655333333333333332 22333333 223344444
Q ss_pred CchHHHHH---HHHHHhccCChHHHHHHHHHHhcC
Q 038401 468 FSDQVHFQ---MLSLYGARKDFNMLESLFERLDSD 499 (542)
Q Consensus 468 ~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~ 499 (542)
.+...+|. ++.+..-.|++++|.+..+++...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 44444444 677888899999999999996543
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.35 E-value=0.00084 Score=45.61 Aligned_cols=52 Identities=13% Similarity=0.048 Sum_probs=33.8
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH
Q 038401 443 NSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 496 (542)
..|.+.+++++|.+++++++..+ |.+...+. .+.++.+.|++++|.+.+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 45667777777777777777765 22222333 677777777777777777773
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.32 E-value=0.058 Score=51.41 Aligned_cols=37 Identities=27% Similarity=0.484 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 038401 145 LLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAE 184 (542)
Q Consensus 145 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 184 (542)
.-++++.++|-.|+... +...++-.|++.+|-++|.+
T Consensus 621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 33455666666566543 33444556666666666654
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.31 E-value=0.0077 Score=49.20 Aligned_cols=88 Identities=17% Similarity=0.331 Sum_probs=46.5
Q ss_pred ccHhHHHHHHHHHhc-----cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC----------------CChHHHHH
Q 038401 122 PDLVAYNTMINVFGK-----AKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVEN----------------HKFVEALS 180 (542)
Q Consensus 122 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----------------g~~~~a~~ 180 (542)
.+-.+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344555555555432 345555555666666666666666666666554321 12334555
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhccCC
Q 038401 181 VFAEMNEVNCPLDLTTCNIMIDVYGQLDM 209 (542)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (542)
++++|...|+-||..++..++..+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 55555555555555555555555544443
No 212
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.0029 Score=53.68 Aligned_cols=95 Identities=8% Similarity=0.130 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH-HHHH-
Q 038401 402 VFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD----SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ-VHFQ- 475 (542)
Q Consensus 402 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~- 475 (542)
.|+.-+. +.+.|++.+|...|...++.. |+ ...+-.|+.++...|++++|..+|..+.+..+..|.. ....
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4555444 345666777777777777642 22 1334456777777777777777777777766444433 3333
Q ss_pred HHHHHhccCChHHHHHHHHHHhcC
Q 038401 476 MLSLYGARKDFNMLESLFERLDSD 499 (542)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~~~ 499 (542)
++.+..+.|+.++|...++++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777775443
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.25 E-value=0.016 Score=44.27 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=43.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHH
Q 038401 406 MIELFSRNKKYANVIEVFEKMRSAG-YFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQV 472 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 472 (542)
-+....+.|++++|++.|+.+...- ..| ....-..++.+|.+.|++++|...+++.++.++..|+..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 3444556777788877777776641 111 224455677777777777777777777777775555433
No 214
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.033 Score=47.91 Aligned_cols=153 Identities=11% Similarity=0.045 Sum_probs=103.1
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 038401 374 ILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFET 453 (542)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 453 (542)
.....|++.+|...|+.+.+... .+...--.++++|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 35667888899999998887643 34556667889999999999999999887643211222222233444555555555
Q ss_pred HHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHH
Q 038401 454 ADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNR 530 (542)
Q Consensus 454 A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 530 (542)
...+-++.-. + |.+..... ++..+...|+.++|.+.+-. ++.+-+..+...--.++.++...|..+.+...+++
T Consensus 222 ~~~l~~~~aa-d--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 222 IQDLQRRLAA-D--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHh-C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5554444443 2 22333333 88999999999999877766 66666666778888899999888877765554444
No 215
>PRK11906 transcriptional regulator; Provisional
Probab=97.25 E-value=0.024 Score=52.35 Aligned_cols=111 Identities=9% Similarity=0.106 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHhccCChHHHHHHHH
Q 038401 416 YANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ-VHFQMLSLYGARKDFNMLESLFE 494 (542)
Q Consensus 416 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 494 (542)
..+|.++.++.++.+ +-|......++.+....|+.+.|...|+++...+ |... .++..+.++.-+|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334455555555532 1144444445555555555666666666666655 1111 22225555555666666666666
Q ss_pred H-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHH
Q 038401 495 R-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNR 530 (542)
Q Consensus 495 ~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 530 (542)
+ +..+|..-...+.-..++.|+.. ..++|+++|-+
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 6 44444433333333344455444 33555555443
No 216
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.23 E-value=0.18 Score=51.99 Aligned_cols=157 Identities=13% Similarity=0.192 Sum_probs=96.3
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038401 347 VGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKM 426 (542)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 426 (542)
.++++.|+.-+..+. ...+........+.|-+.+|+.++..-.+ .-...|.+....+...+.+++|.-.|+..
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 455666666555543 33455555666667777777766442211 12334555556666778888888887766
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHH---HHHHHHHhccCChHHHHHHHHHHhcCCCCC
Q 038401 427 RSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVH---FQMLSLYGARKDFNMLESLFERLDSDSNIN 503 (542)
Q Consensus 427 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 503 (542)
-+ ....+.+|..+|+|.+|..+..++... -+... ..|..-+...++.-+|.++....-.++
T Consensus 966 Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~--- 1029 (1265)
T KOG1920|consen 966 GK---------LEKALKAYKECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP--- 1029 (1265)
T ss_pred cc---------HHHHHHHHHHhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH---
Confidence 43 123455777888888888887776542 22222 227777788888888887777654432
Q ss_pred chhHHHHHHHHHHhhcchhhHHHHHHHH
Q 038401 504 KKELHHVVAGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 531 (542)
..+ ..+|+++-.|++|++.....
T Consensus 1030 -~~a----v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1030 -EEA----VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred -HHH----HHHHhhHhHHHHHHHHHHhc
Confidence 223 34666677788887765543
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.041 Score=46.27 Aligned_cols=118 Identities=6% Similarity=-0.051 Sum_probs=58.3
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCcH
Q 038401 377 RAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD-----SHIIALVLNSYGKLREF 451 (542)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~ 451 (542)
-.|.+.-....+.+.++...+.++.....|++.-.+.|+.+.|...|++..+..-..| ..........|.-++++
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~ 268 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF 268 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch
Confidence 3455555556666666655445555566666666666666666666665443211111 12222222333445556
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH
Q 038401 452 ETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 452 ~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 496 (542)
.+|...+.++.+.+. .+..... -+-++.-.|+...|++.++.+
T Consensus 269 a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred HHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655441 1112211 333333455566666666664
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.26 Score=48.14 Aligned_cols=341 Identities=12% Similarity=0.096 Sum_probs=174.3
Q ss_pred cCCCCCHHHHHH-----HHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCC---HHHHHHHHHHHHHCC
Q 038401 153 QGVKPDTVSYST-----LLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDM---AKDADRLFWSMRKMG 224 (542)
Q Consensus 153 ~g~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~ 224 (542)
-|++.+..-|.. +++-+...+.+..|+++-..+...-.. +...|......+.+..+ .+.+..+-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 366666655544 466677778888888877666432111 14556666666655532 22233333333322
Q ss_pred CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 038401 225 IDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIE----QNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAI 300 (542)
Q Consensus 225 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 300 (542)
. ....+|..+.......|+.+-|..+++.-...+.. .+..-+...+.-+.+.|+.+....++-.+..+ .+..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 2 33455777777777888888888777543222110 01122333444455556666655555555432 1111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh-c-----CCCCCCHHHHHHH
Q 038401 301 TYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHEL-R-----QPNTIPRETAITI 374 (542)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-----~~~~~~~~~l~~~ 374 (542)
.+...+ .+.-.|..+|.+..+.. +.. .+-+.|.+..+....-.+.-+- . .............
T Consensus 580 ~l~~~l------~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 580 SLFMTL------RNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHHHH------HhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 111111 22334445555444321 110 1111122222222211111110 0 0111112223333
Q ss_pred HHHhCCHH---HH-------HHHHHHHHH-cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038401 375 LARAGRIE---EA-------TWVFRQAFD-AGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLN 443 (542)
Q Consensus 375 ~~~~g~~~---~A-------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 443 (542)
+.+..... +| +.+.+.... .+..-.--+.+--+.-+...|+..+|.++-.+..- ||...|..-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHH
Confidence 33332211 11 111222211 11112222344455567778888888887776653 78888888888
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchh
Q 038401 444 SYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLN 522 (542)
Q Consensus 444 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 522 (542)
++...++|++-+++-+... + +..|. ...+|.+.|+.+||.+++.++...+ ..+..|.+.|++.
T Consensus 724 aLa~~~kweeLekfAkskk------s-PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~---------ekv~ay~~~~~~~ 787 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK------S-PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ---------EKVKAYLRVGDVK 787 (829)
T ss_pred HHHhhhhHHHHHHHHhccC------C-CCCchhHHHHHHhcccHHHHhhhhhccCChH---------HHHHHHHHhccHH
Confidence 8888899887766644432 1 34555 7888889999999999888765321 4566778888888
Q ss_pred hHHHHHHHH
Q 038401 523 DASRIMNRM 531 (542)
Q Consensus 523 ~A~~~~~~~ 531 (542)
+|.++.-+-
T Consensus 788 eAad~A~~~ 796 (829)
T KOG2280|consen 788 EAADLAAEH 796 (829)
T ss_pred HHHHHHHHh
Confidence 888765543
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.13 E-value=0.1 Score=47.54 Aligned_cols=163 Identities=9% Similarity=0.002 Sum_probs=107.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038401 370 TAITILARAGRIEEATWVFRQAFDAG---EVKDISVFGCMIELFSR---NKKYANVIEVFEKMRSAGYFPDSHIIALVLN 443 (542)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 443 (542)
.++-+|....+++.-+++.+.+...- ......+-..++.++-+ .|+.++|+.++..++...-.+++.++..+++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44556778889999999999987641 11123333345566667 8999999999999776666688889988887
Q ss_pred HHh----c-----cCcHHHHHHHHHHHHHcCCCCchHHH-HHHHHHHhccCChH----HHHHHH---HH-HhcCCC---C
Q 038401 444 SYG----K-----LREFETADDLYSEMQEEGCVFSDQVH-FQMLSLYGARKDFN----MLESLF---ER-LDSDSN---I 502 (542)
Q Consensus 444 ~~~----~-----~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~----~A~~~~---~~-~~~~~~---~ 502 (542)
.|- . ....++|+..|.+..+.. |+.-. ..++.++...|.-. +..++- .. +...+. .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE---PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC---ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 762 2 234789999999998875 33222 22455555555422 222222 11 112221 1
Q ss_pred CchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 503 NKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 503 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
.+.-.+..++.++.-.|++++|.+.+++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 233556678888889999999999999998765
No 220
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.12 E-value=0.084 Score=43.08 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 038401 367 PRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGY-FPDSHIIALVLNSY 445 (542)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~ 445 (542)
.++.+.--+...|+++.|.+.|+...+.++..+....|.-+ ++.-.|++.-|.+-+.+.-+.+. .|-...|..+.
T Consensus 101 vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~--- 176 (297)
T COG4785 101 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN--- 176 (297)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---
Confidence 34444455566677777777777776654433433333322 23345677777666665554321 11112222222
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCC----chhHHHHHHHHHHhhcch
Q 038401 446 GKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDSDSNIN----KKELHHVVAGIYERANRL 521 (542)
Q Consensus 446 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~ 521 (542)
.+.-++.+|..-+.+-.+.. ..+...+.++..|...=..+.+.+-+.....+ +.. -.+.|+.+++.|...|..
T Consensus 177 E~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~-n~~~Ae~LTEtyFYL~K~~l~~G~~ 253 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYLGKISEETLMERLKADATD-NTSLAEHLTETYFYLGKYYLSLGDL 253 (297)
T ss_pred HhhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHHhhccHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHhccccH
Confidence 23345555554443322211 12222223444443322222222222221110 000 125677777777777777
Q ss_pred hhHHHHHHHHHhcC
Q 038401 522 NDASRIMNRMNKRR 535 (542)
Q Consensus 522 ~~A~~~~~~~~~~~ 535 (542)
++|..+|+-....+
T Consensus 254 ~~A~~LfKLaiann 267 (297)
T COG4785 254 DEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777665544
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.10 E-value=0.0016 Score=44.91 Aligned_cols=63 Identities=14% Similarity=0.336 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC---C-HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038401 401 SVFGCMIELFSRNKKYANVIEVFEKMRSA--GYFP---D-SHIIALVLNSYGKLREFETADDLYSEMQE 463 (542)
Q Consensus 401 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 463 (542)
.+++.+..+|...|++++|+..|++.++. ...+ + ..++..++.+|...|++++|+++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777776542 1111 1 24556666677777777777777776654
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.02 Score=51.41 Aligned_cols=96 Identities=10% Similarity=0.146 Sum_probs=61.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHH
Q 038401 437 IIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIY 515 (542)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~ 515 (542)
++..+..+|.+.+++.+|++..++.++.+ ....-..|.-+.++...|+++.|+..|+++ ..+|. +..+-..++.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~--Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS--NKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHH
Confidence 45556667778888888888888888766 112223444777888888888888888884 44554 455666666655
Q ss_pred Hhhcchhh-HHHHHHHHHhcC
Q 038401 516 ERANRLND-ASRIMNRMNKRR 535 (542)
Q Consensus 516 ~~~g~~~~-A~~~~~~~~~~~ 535 (542)
.+...+++ ..++|..|-.+-
T Consensus 336 ~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 55544433 366777776543
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.017 Score=50.21 Aligned_cols=112 Identities=8% Similarity=-0.047 Sum_probs=44.9
Q ss_pred cCCHHHHHHHHHHhcCCC---CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHHHH
Q 038401 347 VGLVAHAKRLLHELRQPN---TIPRETAITILARAGRIEEATWVFRQAFDAGEVKDI----SVFGCMIELFSRNKKYANV 419 (542)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 419 (542)
.|...+|...++++.+.. ...+...-.++...|+.+.-...+++++.. ..++. .+-..+..++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 344444444444444322 222223334444455555555555554432 11221 1112222333344555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 038401 420 IEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEM 461 (542)
Q Consensus 420 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 461 (542)
++.-++..+ +.| |.-....+...+...|+.+++.++.++-
T Consensus 195 Ek~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555554444 222 2222223333334445555555554443
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.05 E-value=0.0052 Score=41.64 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=30.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 409 LFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.|.+.+++++|++++++++.. .| +...+...+.++.+.|++++|.+.++++.+..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 455556666666666666552 23 33444555555566666666666666666554
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.0078 Score=51.17 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=38.1
Q ss_pred HhCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHhccCcHH
Q 038401 377 RAGRIEEATWVFRQAFDAGEVK--DISVFGCMIELFSRNKKYANVIEVFEKMRSA-GYFP-DSHIIALVLNSYGKLREFE 452 (542)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 452 (542)
+.|++..|...|...++..+.. .+..+-.|+.++...|++++|..+|..+.+. +-.| -+..+.-+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3444555555555554442211 1222333444444555555555555444432 1111 1234444444444455555
Q ss_pred HHHHHHHHHHHcC
Q 038401 453 TADDLYSEMQEEG 465 (542)
Q Consensus 453 ~A~~~~~~~~~~~ 465 (542)
+|...|+++.+..
T Consensus 233 ~A~atl~qv~k~Y 245 (262)
T COG1729 233 EACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHHC
Confidence 5555555554443
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.01 E-value=0.058 Score=42.62 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHH-----cCCCCCHHH
Q 038401 92 YSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMRE-----QGVKPDTVS 161 (542)
Q Consensus 92 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 161 (542)
...++..+...|+++.|..+.+.+.... +-+...|..+|.++...|+...|.+.|+.+.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666666667766666666553 44566666666666667776666666666542 356565544
No 227
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.00 E-value=0.35 Score=46.20 Aligned_cols=410 Identities=10% Similarity=0.079 Sum_probs=216.6
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 038401 18 SVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDR-YTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLI 96 (542)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 96 (542)
+...|+.++.---+..+.+.+..+++.++.. -|.. .-|......-.+.|..+.+.++|++-... ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3455666666555555666777777777754 2333 35556666666788888888888887764 566777776665
Q ss_pred HHHH-hcCCHHHHHHHHHHhHhC-CCC-ccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--
Q 038401 97 ELAR-KLSDYSKAISIFSRLKSS-GIV-PDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVE-- 171 (542)
Q Consensus 97 ~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-- 171 (542)
..+. ..|+.+.....|+..... |.. .+...|...|..-...+++.....++++..+. ....++....-|.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 5444 456777777888877653 221 24556777777777788888888888888874 23333333332221
Q ss_pred -CC------ChHHHHHHHHHHHhc-C---CCCChhhHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 038401 172 -NH------KFVEALSVFAEMNEV-N---CPLDLTTCNIMIDVYGQ-LDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVY 239 (542)
Q Consensus 172 -~g------~~~~a~~~~~~~~~~-~---~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 239 (542)
.. ..+++.++-...... . ..+....+..-+.-... .+..+.+..++.+.. ..--.++
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~ 265 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVY 265 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHH
Confidence 11 122222222111110 0 00000011111100000 000111111111000 0001112
Q ss_pred HhcCcHHHHHHHHHHHHhc---CC----CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038401 240 GEAELFGEAIHLFRLMQRK---EI----EQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKA 312 (542)
Q Consensus 240 ~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 312 (542)
...-........++.-... .+ .++..+|...+..-...|+.+.+.-+++...-- +..=...|-..+.-....
T Consensus 266 ~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~ 344 (577)
T KOG1258|consen 266 QKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESS 344 (577)
T ss_pred HhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHc
Confidence 2222223333333333332 11 234567888888888889999888888876532 111223444445545556
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHH---HHHHHHHHhCCHHHHH---H
Q 038401 313 GKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRE---TAITILARAGRIEEAT---W 386 (542)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~---~ 386 (542)
|+.+.|..++....+...+..+.+-..-.......|++..|..+++.+...-+.... .-+....+.|+.+.+. +
T Consensus 345 ~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 345 GDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred CchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 888888888877766544433333322223344578899999998888753322222 1245567778888877 4
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 038401 387 VFRQAFDAGEVKDISVFGCMIEL-----FSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLR 449 (542)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 449 (542)
++....+. ..+....+.+.-- +.-.++.+.|..++.++.+. ++++...|..+++.+...+
T Consensus 425 l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 425 LYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 44444332 1222222222211 23457888888888888873 3445566666666554443
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.00 E-value=0.0031 Score=43.43 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=27.3
Q ss_pred HHHHHhccCChHHHHHHHHHHh----cCCCCC--chhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 476 MLSLYGARKDFNMLESLFERLD----SDSNIN--KKELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~----~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
++.+|...|++++|+..+++.. ..++.. ....+..++.+|...|++++|++++++..
T Consensus 11 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 11 LARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555421 111111 12445556666666666666666666543
No 229
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.95 E-value=0.27 Score=44.15 Aligned_cols=218 Identities=11% Similarity=0.013 Sum_probs=111.0
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHH---HhcCC
Q 038401 241 EAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRG-IEPNAIT--YSTIIAIW---GKAGK 314 (542)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~--~~~l~~~~---~~~~~ 314 (542)
+.|..+.|.++-+.....- +.-...+...+...+..|+++.|+++++.-+... +.++..- -..|+.+- .-.-+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4444454444444443321 1122344455555555555555555554433321 1222211 11111110 01223
Q ss_pred HHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHH-
Q 038401 315 LDRAAMLFQKLRSSGVEIDPVL-YQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAF- 392 (542)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 392 (542)
...|...-.+..+. .||..- ...-..++.+.|+..++-.+++.+-+..+.+-........+.|+. ++.-++++.
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCc--HHHHHHHHHH
Confidence 44455444444443 233211 122234566777777777777776555444444333334444433 222222222
Q ss_pred -HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHcC
Q 038401 393 -DAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYG-KLREFETADDLYSEMQEEG 465 (542)
Q Consensus 393 -~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 465 (542)
+.-.+.+......+..+....|++..|..--+.... ..|....|..+.+.-. ..|+-.++..++.+.++..
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 221234566666777777788888888877777766 5577777777776554 4588888888888888753
No 230
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.94 E-value=0.29 Score=44.22 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHH
Q 038401 333 DPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQ 390 (542)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (542)
+...|...+.+++..++|++-.++... +..|..+...+..|.+.|+..+|..+..+
T Consensus 207 dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 207 DKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 444444444444444444444443322 23444444455555555555444444443
No 231
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.2 Score=42.32 Aligned_cols=127 Identities=9% Similarity=0.069 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC----CCCCCHHH-----HH
Q 038401 302 YSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ----PNTIPRET-----AI 372 (542)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-----l~ 372 (542)
...++..+...|.+.-....+.+.++...+.++.....+++.-.+.|+.+.|...|++..+ -+...... ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455556666777777777777777776666777777788777788888888777775542 11111111 12
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038401 373 TILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA 429 (542)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 429 (542)
..+.-.+++..|...+.+++..+ +.++...|.-.-+..-.|+..+|++.++.|+..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444566666666676666653 245555555555555667777777777777763
No 232
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.89 E-value=0.35 Score=44.43 Aligned_cols=433 Identities=13% Similarity=0.139 Sum_probs=223.9
Q ss_pred hhhhhHHHHhhCCCCCcH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH--HhccCCHHHHHH
Q 038401 2 SVAILDWINEEARYSPSV----FAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITC--FGKEGMFDSAIS 75 (542)
Q Consensus 2 A~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~ 75 (542)
|-++|..+.++.--.|.. ..-+.++++|... +.+.....+....+.. | ...|-.+..+ +.+.+.++.|++
T Consensus 25 sEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~ 100 (549)
T PF07079_consen 25 SEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKEYRKALQ 100 (549)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhhHHHHHH
Confidence 445666665543223322 2345667777654 5555555555555542 2 2234444443 357899999999
Q ss_pred HHHHHHhC--CCCC------------CHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCC----CCccHhHHHHHHHHHhcc
Q 038401 76 WLQQMEQD--RVSG------------DLVLYSNLIELARKLSDYSKAISIFSRLKSSG----IVPDLVAYNTMINVFGKA 137 (542)
Q Consensus 76 ~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 137 (542)
.+...... +..+ |...-+..+..+...|++.++..+++++...= ..-+..+|+.++-.++++
T Consensus 101 ~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 101 ALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 88776554 2221 22223456678889999999999999887542 235778888866655542
Q ss_pred CcHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccC--CHHH
Q 038401 138 KLFKEARLLIEEMREQ---GVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLD--MAKD 212 (542)
Q Consensus 138 ~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~ 212 (542)
.|-++.+. .+-|+ |.-++-.|.+.=+ .++.-.-..+-|.......++....-.. ...-
T Consensus 181 --------YfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 181 --------YFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred --------HHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccH
Confidence 33333221 12222 2233333332111 0111000011222222333332222111 1112
Q ss_pred HHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHccCCHHHHHHHH
Q 038401 213 ADRLFWSMRKMGIDPSVV-SYNTLLRVYGEAELFGEAIHLFRLMQRKEIE----QNVVTYNTMIKIYGKSLEHEKATNLM 287 (542)
Q Consensus 213 a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (542)
-.++++.-...-+.|+-. +...+...+.+ +.+++..+.+.+....+. .=..+|..++....+.++...|...+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 223333333333344422 22233333332 444444444444332111 12346777777778888888888877
Q ss_pred HHHHHcCCCCCHHHHHHH-------HHHHH----hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHHcCC-HHH
Q 038401 288 QEMQNRGIEPNAITYSTI-------IAIWG----KAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVA---YERVGL-VAH 352 (542)
Q Consensus 288 ~~~~~~~~~p~~~~~~~l-------~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~-~~~ 352 (542)
.-+... .|+...-..+ .+..+ ..-+...-+.+|+.....++. .......|+.+ +-+.|. -++
T Consensus 322 ~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 322 ALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHH
Confidence 766654 3433321111 11111 111233345556666555432 12222223322 344554 778
Q ss_pred HHHHHHHhcCCCCCCH---HHHH----HHH---HHhCCHHHHHHHHHHHHHcCCCc----CHHHHHHHHHH--HHhcCCH
Q 038401 353 AKRLLHELRQPNTIPR---ETAI----TIL---ARAGRIEEATWVFRQAFDAGEVK----DISVFGCMIEL--FSRNKKY 416 (542)
Q Consensus 353 a~~~~~~~~~~~~~~~---~~l~----~~~---~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~ 416 (542)
|+++++.+.+-..... +.+. ..| .....+.+-+.+-.-+.+.|.+| +...-|.|.++ +..+|++
T Consensus 399 alnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 399 ALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 8888888765322221 1111 111 12234444444545555667665 34455666655 4578999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038401 417 ANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQ 462 (542)
Q Consensus 417 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 462 (542)
.++.-.-.-+.+ +.|++.+|..++-++....++++|..++..+.
T Consensus 479 ~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 479 HKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999888777777 77999999999999999999999999998764
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.87 E-value=0.048 Score=41.70 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=22.1
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCchHH--HHHHHHHHhccCChHHHHHHHHH
Q 038401 446 GKLREFETADDLYSEMQEEGCVFSDQV--HFQMLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 446 ~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~ 495 (542)
.+.|++++|.+.|+.+....+..+-.. ...++.+|.+.|++++|+..+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 344555555555555554432222111 11144455555555555555555
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.86 E-value=0.071 Score=51.28 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=69.3
Q ss_pred hCCHHHHHHHHHHHHHcCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhccCcHHH
Q 038401 378 AGRIEEATWVFRQAFDAGEVKDISVFG-CMIELFSRNKKYANVIEVFEKMRSAG-YFP--DSHIIALVLNSYGKLREFET 453 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~ 453 (542)
..+.+.|.++++.+.+. . |+...|. .-.+.+...|+.++|++.|+++.... -.| ....+--++..+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~-y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR-Y-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34566777777777765 2 3433332 33455666778888888877665311 111 12233345566677778888
Q ss_pred HHHHHHHHHHcCCCCchHHHHH--HHHHHhccCCh-------HHHHHHHHHHh
Q 038401 454 ADDLYSEMQEEGCVFSDQVHFQ--MLSLYGARKDF-------NMLESLFERLD 497 (542)
Q Consensus 454 A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~-------~~A~~~~~~~~ 497 (542)
|...|.++.+.+ ......|. .+.++...|+. ++|.++|++++
T Consensus 324 A~~~f~~L~~~s--~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES--KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc--ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 888888887765 12233333 55666677777 77777777753
No 235
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.84 E-value=0.14 Score=45.30 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=24.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCC-----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038401 373 TILARAGRIEEATWVFRQAFDAGE-----VKDISVFGCMIELFSRNKKYANVIEVFEKM 426 (542)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 426 (542)
.+....+.++++++.|+.+.+-.. .....++-.|...|.+..++++|.-+..++
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKA 188 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhH
Confidence 334444445555555554443110 011234445555555555555555444443
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.78 E-value=0.036 Score=40.99 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=55.8
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCc
Q 038401 374 ILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS---HIIALVLNSYGKLRE 450 (542)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~ 450 (542)
++...|+.+.|++.|.+.+.. .+..+..||.-..++.-+|+.++|++-+++.++..-.... ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345567777777777777665 3345667777777777777777777777777664111111 223333345556677
Q ss_pred HHHHHHHHHHHHHcC
Q 038401 451 FETADDLYSEMQEEG 465 (542)
Q Consensus 451 ~~~A~~~~~~~~~~~ 465 (542)
.+.|+.-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766665
No 237
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.11 Score=41.73 Aligned_cols=117 Identities=8% Similarity=0.016 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhCCCCCCHHH--HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCc-hHH-HHHHHHHHhccCChHHHHHHH
Q 038401 418 NVIEVFEKMRSAGYFPDSHI--IALVLNSYGKLREFETADDLYSEMQEEGCVFS-DQV-HFQMLSLYGARKDFNMLESLF 493 (542)
Q Consensus 418 ~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~-~~~l~~~~~~~g~~~~A~~~~ 493 (542)
+.....+++....-...... -..+...+...|++++|...++..+....... ... ...++.+....|.+|+|...+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44455556655321111122 22355677889999999999998886431101 111 222788899999999999999
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 494 ERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
+....... .+..-..-++++...|+.++|+.-|++.+..+.
T Consensus 150 ~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 150 DTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred hccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 98764432 233456778999999999999999999988763
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=96.76 E-value=0.094 Score=48.61 Aligned_cols=110 Identities=10% Similarity=-0.033 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHH
Q 038401 379 GRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFETADDL 457 (542)
Q Consensus 379 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 457 (542)
....+|.+..+++++.+ +.|+.....++.+....++++.|...|++... +.||. .+|......+.-.|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567888888888875 47888888899888888999999999999998 55865 6676777777889999999999
Q ss_pred HHHHHHcCCCCchHHHHH----HHHHHhccCChHHHHHHHHH
Q 038401 458 YSEMQEEGCVFSDQVHFQ----MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~ 495 (542)
++++.+.. |...... .+..|+..+ .+.|++++-+
T Consensus 395 i~~alrLs---P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQLE---PRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHhccC---chhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 99999976 5443333 334555554 6777777765
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.76 E-value=0.02 Score=45.32 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=48.5
Q ss_pred HhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHh-----CCCCccHhHHH
Q 038401 55 YTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKS-----SGIVPDLVAYN 128 (542)
Q Consensus 55 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 128 (542)
.+...++..+...|++++|.++.+.+.... +.+...|..+|.++...|+...|.+.|+.+.. .|+.|++.+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 356667777777888888888888887764 33777888888888888888888888877643 47777766543
No 240
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.73 E-value=0.42 Score=43.19 Aligned_cols=108 Identities=17% Similarity=0.242 Sum_probs=70.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038401 266 TYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYE 345 (542)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 345 (542)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... .-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34445566666777777776655553 46777777777777777777766554321 123456777777777
Q ss_pred HcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHH
Q 038401 346 RVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFR 389 (542)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (542)
+.|...+|..++..+ +...-+..|.++|.+.+|.+.--
T Consensus 249 ~~~~~~eA~~yI~k~------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhC------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777777662 23556677777777777765533
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.69 E-value=0.0097 Score=54.73 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038401 367 PRETAITILARAGRIEEATWVFRQAFDAGEVKD-I---SVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVL 442 (542)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 442 (542)
.+..+..+|.+.|++++|+..|+++++.. |+ . .+|..+..+|...|+.++|+..++++++.+ .| .|..+.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~~i~ 150 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFSTIL 150 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHHHHH
Confidence 35667788889999999999999998864 43 3 358888999999999999999999998842 12 222111
Q ss_pred H--HHhccCcHHHHHHHHHHHHHcC
Q 038401 443 N--SYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 443 ~--~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
. .+....+.++..++++.+.+-+
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhC
Confidence 1 1112234446666666666655
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.094 Score=45.25 Aligned_cols=124 Identities=14% Similarity=0.156 Sum_probs=96.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccC
Q 038401 407 IELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARK 484 (542)
Q Consensus 407 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g 484 (542)
.......|++.+|..+|+...... | +......++.+|...|+.+.|..++..+..... ........ -+..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHh
Confidence 334567899999999999998843 4 456677889999999999999999999876541 11112211 456777888
Q ss_pred ChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 485 DFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 485 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
...+...+-+++..+|+ +...-+.++..|...|+.++|.+.+-.+.+++
T Consensus 218 ~~~~~~~l~~~~aadPd--d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 218 ATPEIQDLQRRLAADPD--DVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred cCCCHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 88888888888888886 55678899999999999999999988877653
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.67 E-value=0.55 Score=43.93 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHH
Q 038401 369 ETAITILARAGRIEEATWVFRQAFDAGEVK-DISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS--HIIALVLNSY 445 (542)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~ 445 (542)
..+..++.+.|+.++|++.++++.+..+.. +..+...|+.++...+.+.++..++.+--+... |.+ ..|+..+--+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHHHH
Confidence 345666677788888888888887653322 344566788888888888888888887654322 433 3344433222
Q ss_pred hccCc---------------HHHHHHHHHHHHHcCC
Q 038401 446 GKLRE---------------FETADDLYSEMQEEGC 466 (542)
Q Consensus 446 ~~~g~---------------~~~A~~~~~~~~~~~~ 466 (542)
...++ -..|.+.+.++.+.++
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 22222 1246677888887763
No 244
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.67 E-value=0.15 Score=40.10 Aligned_cols=123 Identities=13% Similarity=0.112 Sum_probs=64.0
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHH--HHHHHHhccCc
Q 038401 375 LARAGRIEEATWVFRQAFDAGEVKDIS-VFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSH-IIA--LVLNSYGKLRE 450 (542)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~--~l~~~~~~~g~ 450 (542)
+.+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|.++-...-.|-.. -.. .-...+...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345566777777777776655432221 11222333456677777777777766533233221 111 11223445666
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHH--HHHHHhccCChHHHHHHHHHHhcC
Q 038401 451 FETADDLYSEMQEEGCVFSDQVHFQ--MLSLYGARKDFNMLESLFERLDSD 499 (542)
Q Consensus 451 ~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 499 (542)
+++...-.+.+...+ .|-.+... |+.+-.+.|++..|.++|..+..+
T Consensus 148 y~dV~srvepLa~d~--n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDG--NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCC--ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666655554433 12222222 556666677777777777776544
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.53 E-value=0.42 Score=40.60 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=32.4
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038401 165 LLNLYVENHKFVEALSVFAEMNEVNCPLD---LTTCNIMIDVYGQLDMAKDADRLFWSMRK 222 (542)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 222 (542)
+.+.|.+.|.+..|..-++.|.+. .+-. ...+-.+..+|...|-.++|.+.-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 455666777777777777777664 2222 22344455566666666666655544443
No 246
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.52 E-value=0.027 Score=51.89 Aligned_cols=66 Identities=12% Similarity=-0.020 Sum_probs=57.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038401 397 VKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS----HIIALVLNSYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 397 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 464 (542)
+.+...++.+..+|...|++++|+..|++.++ +.|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45688899999999999999999999999998 55764 35888999999999999999999999986
No 247
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.51 E-value=0.037 Score=41.87 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=33.3
Q ss_pred CCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 038401 118 SGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQ-GVKPDTVSYSTLLNLYV 170 (542)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~ 170 (542)
..+.|+..+..+++.+|+..+++..|.++++...+. +++.+..+|..|+.-..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566667777777777777777777777666543 45555666666665443
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.39 E-value=0.21 Score=39.09 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038401 364 NTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLN 443 (542)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 443 (542)
+......++..+...+.......+++.++..+. .++...+.++..|++.+. .+..+.++. . ++......+++
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~----~~~yd~~~~~~ 77 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--K----SNHYDIEKVGK 77 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--c----cccCCHHHHHH
Confidence 445566777888888889999999999988764 678889999999987643 444454442 1 23333445778
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhcc-CChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh
Q 038401 444 SYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGAR-KDFNMLESLFERLDSDSNINKKELHHVVAGIYER 517 (542)
Q Consensus 444 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 517 (542)
.|.+.+.++++..++.++-.. . ..+..+... ++++.|++++++.. +.+.|..++..+..
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~~-----~----~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l~ 137 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGNF-----K----DAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALLD 137 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcCH-----H----HHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHHc
Confidence 888999999999999876431 1 123333333 88999999988632 34577777766643
No 249
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.38 E-value=0.086 Score=39.93 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC---------------CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038401 18 SVFAYNVVLRNVLRAKQWELAHGLFDEMRQRG---------------IAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQ 82 (542)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 82 (542)
|..++..++.++++.|+.+....+++..-..+ ..|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34667788888888888888888776553211 224445555555555555555555555554433
Q ss_pred C-CCCCCHHhHHHHHHHH
Q 038401 83 D-RVSGDLVLYSNLIELA 99 (542)
Q Consensus 83 ~-~~~~~~~~~~~l~~~~ 99 (542)
. +++.+..+|..|+.-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 2 3444444555444443
No 250
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.37 E-value=0.88 Score=42.55 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=41.6
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HhccCCHHHHHHHHHHHHhCC
Q 038401 15 YSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITC-FGKEGMFDSAISWLQQMEQDR 84 (542)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~ 84 (542)
+..|+..|...+..+.+.+.+.+...+|..|...++. ++..|-....- |-.+.+++.|..+|..-++.+
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 4567777777777777777777777777777765322 44444433332 223334777777776666653
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.37 E-value=0.066 Score=39.64 Aligned_cols=91 Identities=13% Similarity=0.017 Sum_probs=72.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHH--HHH-HHHHHhc
Q 038401 407 IELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQV--HFQ-MLSLYGA 482 (542)
Q Consensus 407 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~-l~~~~~~ 482 (542)
.-++...|+.+.|++.|.+.+. +-| ....|+.-..++.-+|+.++|+.-++++++..+...... .+. -+.+|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3456788999999999999998 444 568899999999999999999999999999754433222 222 5678888
Q ss_pred cCChHHHHHHHHHHhcC
Q 038401 483 RKDFNMLESLFERLDSD 499 (542)
Q Consensus 483 ~g~~~~A~~~~~~~~~~ 499 (542)
.|+-+.|..-|+....-
T Consensus 128 ~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQL 144 (175)
T ss_pred hCchHHHHHhHHHHHHh
Confidence 99999999999886443
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.088 Score=47.53 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=33.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS 435 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 435 (542)
+.-++.+.+++..|++...+.++.+ ++|...+-.-..++...|+++.|+..|+++++ +.|+.
T Consensus 263 lA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~N 324 (397)
T KOG0543|consen 263 LAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSN 324 (397)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCc
Confidence 3444555555555555555555543 24455444555555555666666666665555 44543
No 253
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.26 E-value=1.2 Score=42.83 Aligned_cols=393 Identities=11% Similarity=0.058 Sum_probs=212.3
Q ss_pred hhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHh-ccCCHHHHHHHHHHHHh
Q 038401 4 AILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFG-KEGMFDSAISWLQQMEQ 82 (542)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 82 (542)
.+++.+..++ |---..|-.....-.+.|..+.+.++|++-+.. ++.+...|......+. ..|+.+...+.|+....
T Consensus 66 ~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~ 142 (577)
T KOG1258|consen 66 EVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKS 142 (577)
T ss_pred HHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3444454332 222335666666777889999999999998874 6677888888776554 47888888888988876
Q ss_pred C-CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhc-----cCcHHHHHHHHHHHHHc--
Q 038401 83 D-RVS-GDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGK-----AKLFKEARLLIEEMREQ-- 153 (542)
Q Consensus 83 ~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~-- 153 (542)
. |.. .+...|...|..-..++++.....+++++++.....-...|.......-. ....+++.++-......
T Consensus 143 ~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~ 222 (577)
T KOG1258|consen 143 YVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSK 222 (577)
T ss_pred hcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhh
Confidence 4 321 25567888888888889999999999999874211111112221111111 12233333332222211
Q ss_pred -C-CCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC---C--
Q 038401 154 -G-VKPDTVSYSTLLNLYV-ENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMG---I-- 225 (542)
Q Consensus 154 -g-~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-- 225 (542)
+ ..+....+..-+.--. ..+..+++...+.+... ..-..+............++.-.+.. +
T Consensus 223 ~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkp 291 (577)
T KOG1258|consen 223 ITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKP 291 (577)
T ss_pred cccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCc
Confidence 0 0001111111111000 01111122211111111 01111222222233333333333211 1
Q ss_pred --CCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038401 226 --DPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYS 303 (542)
Q Consensus 226 --~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 303 (542)
.++..+|..-+.--...|+.+.+.-+|+...-. +..-...|-..+.-....|+.+-|..++....+-.++-.+.+.-
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 234567777778788889998888888876532 11223345555555555688888887776655543332222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHH---HHHHHhcC--CCCCCHHHHHH----
Q 038401 304 TIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPV-LYQTMIVAYERVGLVAHAK---RLLHELRQ--PNTIPRETAIT---- 373 (542)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~--~~~~~~~~l~~---- 373 (542)
.-....-..|+++.|..+++.+.+.- |+.. .-..-+....+.|..+.+. .++..... .+......+.-
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFAR 448 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHH
Confidence 12222335689999999999988763 4422 2223334455677777776 33333322 12222222221
Q ss_pred -HHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 038401 374 -ILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNK 414 (542)
Q Consensus 374 -~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 414 (542)
.+.-.++.+.|..++.++.+. .+++...|..+++....++
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 123458899999999999887 5577788888887766554
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.23 E-value=0.64 Score=39.55 Aligned_cols=59 Identities=15% Similarity=0.026 Sum_probs=28.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCchH--HHHHHHHHHhccCChHHHHHHHHHHhcC
Q 038401 441 VLNSYGKLREFETADDLYSEMQEEGCVFSDQ--VHFQMLSLYGARKDFNMLESLFERLDSD 499 (542)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 499 (542)
+.+-|.+.|.+..|..-++.+++.....+.. ....+..+|.+.|..++|...-+-+..+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3344555555666666666665553221111 1111445555566666555555554433
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.20 E-value=0.86 Score=40.68 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=30.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038401 407 IELFSRNKKYANVIEVFEKMRS----AGYFPD-SHIIALVLNSYGKLREFETADDLYSEMQE 463 (542)
Q Consensus 407 ~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 463 (542)
.-++...|+..+|.+..++..+ .|-+|. ......+.+.|...|+.+.|..-|+.+..
T Consensus 213 aValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 213 AVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 3345555666666666555433 232221 23344555666666666666666665543
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.18 E-value=0.22 Score=47.28 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=96.2
Q ss_pred HHHhcCHHHHHHHHH--HHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 038401 29 VLRAKQWELAHGLFD--EMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYS 106 (542)
Q Consensus 29 ~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 106 (542)
..-+|+++.+.+..+ .+.. .+ +....+.++.-+.+.|..+.|+++... +. .-.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHH
Confidence 445678888766664 2221 12 244577888888888888888877433 21 2345566788888
Q ss_pred HHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 038401 107 KAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMN 186 (542)
Q Consensus 107 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (542)
.|.++.+++ ++...|..|.....+.|+++-|++.|.+..+ +..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 887764443 3677888888888888888888888887654 5667777788888877777777766
Q ss_pred hcCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038401 187 EVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWS 219 (542)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 219 (542)
..| -++....++.-.|+.++..+++..
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 654 245555556666777777766644
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=1.6 Score=43.63 Aligned_cols=177 Identities=15% Similarity=0.134 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 038401 23 NVVLRNVLRAKQWELAHGLFDEMRQRGIAPDR--YTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELAR 100 (542)
Q Consensus 23 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (542)
..-+..+.+...++-|+.+-+ ..+..++. .........+.+.|++++|...|-+-... +.|. .++.-+.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 344455555555555555432 22222111 12223333444567777776666555432 1221 2333344
Q ss_pred hcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHH
Q 038401 101 KLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALS 180 (542)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 180 (542)
...+..+...+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.-
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 444455555566666666543 34444566666666666666555544433 2211 1112334444444454455443
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038401 181 VFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSM 220 (542)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (542)
+-..... +......++ -..+++++|.+.+..+
T Consensus 485 LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 3332211 222222222 2345566666655543
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.11 Score=45.54 Aligned_cols=159 Identities=11% Similarity=0.014 Sum_probs=120.1
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCc
Q 038401 375 LARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSH----IIALVLNSYGKLRE 450 (542)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~ 450 (542)
+--.|+..+|-..++++++. .|.|...++..-++|...|+...-...++++... ..|+.. .-..+..++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34568888898999999886 5678888888889999999999999999988753 234432 22344456678999
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHH--HHHHHhccCChHHHHHHHHHHhcCCCC---CchhHHHHHHHHHHhhcchhhHH
Q 038401 451 FETADDLYSEMQEEGCVFSDQVHFQ--MLSLYGARKDFNMLESLFERLDSDSNI---NKKELHHVVAGIYERANRLNDAS 525 (542)
Q Consensus 451 ~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 525 (542)
+++|.+.-+++.+.+ +...+.. ...++.-.|++.++.++..+-..+=.. .-...|-+.+-.+...+.++.|+
T Consensus 191 y~dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred chhHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 999999999999987 4444333 888999999999999999986543221 11355777888888889999999
Q ss_pred HHHHHHHhcCCCC
Q 038401 526 RIMNRMNKRRTFN 538 (542)
Q Consensus 526 ~~~~~~~~~~~~~ 538 (542)
++|++=.-+....
T Consensus 268 eIyD~ei~k~l~k 280 (491)
T KOG2610|consen 268 EIYDREIWKRLEK 280 (491)
T ss_pred HHHHHHHHHHhhc
Confidence 9999844433333
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.99 E-value=0.5 Score=44.91 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=74.7
Q ss_pred HHhcCcHHHHHHHHH--HHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 038401 239 YGEAELFGEAIHLFR--LMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLD 316 (542)
Q Consensus 239 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 316 (542)
..-.++++.+.++.+ .+.. .+ +....+.++..+.+.|-.+.|+.+..+-.. -.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHH
Confidence 344566666555553 1111 11 133355666666666766666665433211 122334567776
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 038401 317 RAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGE 396 (542)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 396 (542)
.|.++.+. ..+...|..|.+...+.|+++-|.+.+.+.. .+..+.-.|...|+.+.-.++.+.+...|.
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 66655432 2255677777777777777777777776654 345555555666666555555555554432
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038401 397 VKDISVFGCMIELFSRNKKYANVIEVFE 424 (542)
Q Consensus 397 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 424 (542)
++....++...|+.++..+++.
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHH
Confidence 3333444444555555555444
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.94 E-value=0.8 Score=42.92 Aligned_cols=60 Identities=10% Similarity=0.146 Sum_probs=39.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHhccCChHHHHHHHHHHhc
Q 038401 439 ALVLNSYGKLREFETADDLYSEMQEEGCVF-SDQVHFQMLSLYGARKDFNMLESLFERLDS 498 (542)
Q Consensus 439 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 498 (542)
..+..++.+.|+.++|++.+..+.+..+.. .-.+.+.|+.++...+.+.++..++.+-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 346666677788888888888877654221 122344477778888888888888777643
No 261
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.87 E-value=0.0085 Score=33.65 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 507 LHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 507 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
+|..|+.+|.+.|+|++|+++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366788888888888888888888543
No 262
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=2.5 Score=41.79 Aligned_cols=361 Identities=13% Similarity=0.090 Sum_probs=182.5
Q ss_pred HhccCCHHHHHHHHHHH--------HhCCCCCCHHhHHH-----HHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHH
Q 038401 64 FGKEGMFDSAISWLQQM--------EQDRVSGDLVLYSN-----LIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTM 130 (542)
Q Consensus 64 ~~~~g~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 130 (542)
+.+.-++++-..+.+.+ ...|++.+..-|.. ++.-+...+.+..|+++-..+...-... ...|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHH
Confidence 34455666655554433 23466666665554 4555667788888888877765322122 4556666
Q ss_pred HHHHhccCc---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCC----CChhhHHHHHHH
Q 038401 131 INVFGKAKL---FKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCP----LDLTTCNIMIDV 203 (542)
Q Consensus 131 ~~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~ 203 (542)
...+.+..+ -+.+..+-+++... . .+..+|..+.+.....|+.+-|..+++.=...+.. .+..-+...+.-
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKK 555 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHH
Confidence 666655432 22233333333322 2 34556777888788889998888877543222110 112223334444
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHH
Q 038401 204 YGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKA 283 (542)
Q Consensus 204 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 283 (542)
+...|+.+-...++-.+... -+...+. ....+...|..+|.+..++. +.. .+-..|-...+...+
T Consensus 556 aies~d~~Li~~Vllhlk~~---~~~s~l~------~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~ 620 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLKNK---LNRSSLF------MTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQAL 620 (829)
T ss_pred HHhcCCchhHHHHHHHHHHH---HHHHHHH------HHHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhh
Confidence 45555555555555444432 1111111 11123345555555554421 111 111222222222221
Q ss_pred HHH-HHHHH----HcCCCCCHHHHHHHHHHHHhcCCHH---HH-------HHHHHHHHh-cCCCCCHHHHHHHHHHHHHc
Q 038401 284 TNL-MQEMQ----NRGIEPNAITYSTIIAIWGKAGKLD---RA-------AMLFQKLRS-SGVEIDPVLYQTMIVAYERV 347 (542)
Q Consensus 284 ~~~-~~~~~----~~~~~p~~~~~~~l~~~~~~~~~~~---~a-------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 347 (542)
-.+ ++... ..|..|+. ......+.+..... +| +.+.+.+.. .+......+.+--+.-+...
T Consensus 621 a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~ 697 (829)
T KOG2280|consen 621 ASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILI 697 (829)
T ss_pred hhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHc
Confidence 111 11100 11223332 22233333332211 11 111222211 12223334445555566677
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038401 348 GLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMR 427 (542)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 427 (542)
|+-.+|.++-.+.+-++-..|-.-+.++...+++++-+++-+.. .++.-|.-.+.+|.+.|+.++|.+++-+..
T Consensus 698 g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 698 GQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred cchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 88888888888777777777776777778888877665554432 224456667778888888888888776653
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 038401 428 SAGYFPDSHIIALVLNSYGKLREFETADDLYSE 460 (542)
Q Consensus 428 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (542)
. .. -...+|.+.|++.+|.+.--+
T Consensus 772 ~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 772 G-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred C-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 2 11 345567777888777766443
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.85 Score=36.05 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=57.5
Q ss_pred HcCCHHHHHHHHHHhcCCCCCCHHHH-----HHHHHHhCCHHHHHHHHHHHHHcCCCcCHHH-HHHH--HHHHHhcCCHH
Q 038401 346 RVGLVAHAKRLLHELRQPNTIPRETA-----ITILARAGRIEEATWVFRQAFDAGEVKDISV-FGCM--IELFSRNKKYA 417 (542)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l--~~~~~~~g~~~ 417 (542)
+.+..++|+.-|..+.+.+...|..+ .......|+...|...|+++-.-...|-+.- .-.| ...+..+|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34444444444444444333333322 2234445555666666665544322222210 0011 12234566676
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 418 NVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 418 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
......+-+-..+-+.-...-..|.-+-.+.|++.+|.++|..+....
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 666665555433221122333455556667777777777777776644
No 264
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=1.2 Score=37.53 Aligned_cols=205 Identities=13% Similarity=0.144 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHh
Q 038401 301 TYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPN--TIPRETAITILARA 378 (542)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~ 378 (542)
.|.....+|....++++|...+.+..+. ...+...|. ..+.++.|.-+.+++..-+ ...++....+|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4555555666667777776666555542 122222111 1122333333333332211 01122223444444
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHhccCcHHH
Q 038401 379 GRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA---GY--FPDSHIIALVLNSYGKLREFET 453 (542)
Q Consensus 379 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~g~~~~ 453 (542)
|..+.|-..++++-+ .....++++|+++|++.... +- +.-...+..+.+.+.+..++.+
T Consensus 105 GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 544444444443322 23456778888888876542 10 1112445566677778888888
Q ss_pred HHHHHHHHHHcC----CC-CchHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHhhcchhhHH
Q 038401 454 ADDLYSEMQEEG----CV-FSDQVHFQMLSLYGARKDFNMLESLFERLDSDSNINK---KELHHVVAGIYERANRLNDAS 525 (542)
Q Consensus 454 A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 525 (542)
|-..+.+-.... .. .+-..+...+-++....++..|.+.++.--..|+... ......|+..| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 777666543221 00 1111122255666778899999999998544444433 34555666666 567766666
Q ss_pred HHHHH
Q 038401 526 RIMNR 530 (542)
Q Consensus 526 ~~~~~ 530 (542)
.++..
T Consensus 248 kvl~s 252 (308)
T KOG1585|consen 248 KVLSS 252 (308)
T ss_pred HHHcC
Confidence 55543
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.59 E-value=3.1 Score=43.59 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=46.2
Q ss_pred HHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHH--HHHHHHHHHhcCCHHHHHHH
Q 038401 345 ERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISV--FGCMIELFSRNKKYANVIEV 422 (542)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~ 422 (542)
...+.+++|.-.|+..- .....+.++..+|++.+|+.+..++.. ..+... -..|+.-+...+++-+|-++
T Consensus 950 ~~~~~~~~Aal~Ye~~G-----klekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~i 1021 (1265)
T KOG1920|consen 950 REELMSDEAALMYERCG-----KLEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKI 1021 (1265)
T ss_pred HHhccccHHHHHHHHhc-----cHHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHH
Confidence 34455555555544432 122334445555555555555444421 111111 13444455555666666655
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038401 423 FEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQ 462 (542)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 462 (542)
..+.... |. ..+..|++...|++|.++.....
T Consensus 1022 l~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1022 LLEYLSD---PE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 5555431 11 12223445556666666554443
No 266
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.44 E-value=0.015 Score=32.05 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=20.4
Q ss_pred HhcCCCCCchhHHHHHHHHHHhhcchhhHH
Q 038401 496 LDSDSNINKKELHHVVAGIYERANRLNDAS 525 (542)
Q Consensus 496 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 525 (542)
+..+|+ +..+|+.++.+|...|++++|+
T Consensus 6 ie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 444555 5678888888888888888875
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.43 E-value=0.95 Score=35.34 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhc
Q 038401 24 VVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGK 66 (542)
Q Consensus 24 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 66 (542)
.++..+.+.+.+......++.+...+. .++..++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444445554444444432 244444444444443
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.38 E-value=0.062 Score=31.81 Aligned_cols=26 Identities=4% Similarity=0.109 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 403 FGCMIELFSRNKKYANVIEVFEKMRS 428 (542)
Q Consensus 403 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 428 (542)
+..+..+|...|++++|+++|+++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.23 E-value=0.085 Score=31.21 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 038401 21 AYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTL 60 (542)
Q Consensus 21 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 60 (542)
++..+...+.+.|++++|+++|+++.+..+. |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 4555666666666666666666666665332 44444433
No 270
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=4 Score=41.05 Aligned_cols=146 Identities=18% Similarity=0.233 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 038401 22 YNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARK 101 (542)
Q Consensus 22 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (542)
.-...+.+.+.|++++|...+-+-... +.| ..+|.-|....+...-..+++.+.+.|.. +...-..|+.+|.+
T Consensus 371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiK 443 (933)
T KOG2114|consen 371 HRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIK 443 (933)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHH
Confidence 444455667899999999988665543 233 34566667777778888899999999876 66666789999999
Q ss_pred cCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHH
Q 038401 102 LSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSV 181 (542)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~ 181 (542)
.++.++..+..+... .|.. ..-....+..+.+.+-.++|.-+-..... .......+ +-..+++++|++.
T Consensus 444 lkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~y 512 (933)
T KOG2114|consen 444 LKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRY 512 (933)
T ss_pred hcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHH
Confidence 999998877766654 2211 11244566777777777777776665543 23333333 3457889999998
Q ss_pred HHHH
Q 038401 182 FAEM 185 (542)
Q Consensus 182 ~~~~ 185 (542)
+..+
T Consensus 513 i~sl 516 (933)
T KOG2114|consen 513 ISSL 516 (933)
T ss_pred HhcC
Confidence 8776
No 271
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.14 E-value=0.27 Score=42.08 Aligned_cols=104 Identities=13% Similarity=0.251 Sum_probs=61.1
Q ss_pred CChhhHHHHHHHHh-----ccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHH
Q 038401 192 LDLTTCNIMIDVYG-----QLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVT 266 (542)
Q Consensus 192 ~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 266 (542)
-|..+|...+..+. +.+.++-....++.|.+.|+..|..+|+.|+..+-+..-. |. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-HH
Confidence 34555555555443 2344555555666666666666666666666654332211 11 11
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 038401 267 YNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGK 314 (542)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 314 (542)
+....-.|- .+-+-+++++++|..+|+.||..+-..+++++.+.+-
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111121 2335578899999999999999999999998877664
No 272
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.02 E-value=0.062 Score=29.47 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 506 ELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
..|..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467788888888888888888888877654
No 273
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.02 E-value=2.1 Score=36.92 Aligned_cols=197 Identities=18% Similarity=0.137 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCC---HHHHHH-
Q 038401 299 AITYSTIIAIWGKAGKLDRAAMLFQKLRSS-GVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIP---RETAIT- 373 (542)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~- 373 (542)
...+......+...+.+..+...+...... ........+......+...+.+..+...+.......... ......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555555666666666666655531 123344455555555566666666666666655422221 222222
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccC
Q 038401 374 ILARAGRIEEATWVFRQAFDAGE--VKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD--SHIIALVLNSYGKLR 449 (542)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 449 (542)
.+...|+++.|...+.++..... ......+......+...++.+.+...+.+.... .|+ ...+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 56777888888888888765321 123334444444466778888888888888873 233 566777777888888
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhc
Q 038401 450 EFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDS 498 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 498 (542)
++++|...+..+...... .......+...+...|.++++...+.+...
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888886511 012233355555567778888888888543
No 274
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.01 E-value=0.42 Score=38.65 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH--HH
Q 038401 405 CMIELFSRNKKYANVIEVFEKMRSAGYFPDS-----HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ--ML 477 (542)
Q Consensus 405 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~ 477 (542)
.=+.-+...|++.+|..-|..++... +|.+ ..|..-..++.+.+.++.|+.-..++++.+ |...-.. -+
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---pty~kAl~RRA 175 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN---PTYEKALERRA 175 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---chhHHHHHHHH
Confidence 34566788999999999999999853 2322 234444567789999999999999999987 5443333 57
Q ss_pred HHHhccCChHHHHHHHHHH-hcCCC
Q 038401 478 SLYGARKDFNMLESLFERL-DSDSN 501 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~-~~~~~ 501 (542)
.+|.+..++++|+.=++++ ..+|.
T Consensus 176 eayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 8899999999999999996 44554
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.99 E-value=2.5 Score=37.71 Aligned_cols=147 Identities=14% Similarity=0.046 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hccCcHHHHHHHHH
Q 038401 383 EATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSY---GKLREFETADDLYS 459 (542)
Q Consensus 383 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~ 459 (542)
+|..+++.+... .+..+.++-.-+..+.+.++.+++.+.+.+|+..-..+ ...+..++..+ .... ...|...+.
T Consensus 105 ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~-e~~~~~~l~~i~~l~~~~-~~~a~~~ld 181 (278)
T PF08631_consen 105 KALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS-ESNFDSILHHIKQLAEKS-PELAAFCLD 181 (278)
T ss_pred HHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc-cchHHHHHHHHHHHHhhC-cHHHHHHHH
Confidence 445555555443 22234444445566666777788888888887642112 22333333332 3322 345555555
Q ss_pred HHHHcCCCCchHHHHH--HH-HHHh--ccCC------hHHHHHHHHHHhcC---CCCCch-----hHHHHHHHHHHhhcc
Q 038401 460 EMQEEGCVFSDQVHFQ--ML-SLYG--ARKD------FNMLESLFERLDSD---SNINKK-----ELHHVVAGIYERANR 520 (542)
Q Consensus 460 ~~~~~~~~~~~~~~~~--l~-~~~~--~~g~------~~~A~~~~~~~~~~---~~~~~~-----~~~~~l~~~~~~~g~ 520 (542)
.++.....++...+.. ++ ..+. ..++ .+...++++.+... +-.... .....-+..++++++
T Consensus 182 ~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~ 261 (278)
T PF08631_consen 182 YLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKN 261 (278)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5554432323221111 11 2222 2111 34444445543221 111111 122234556778999
Q ss_pred hhhHHHHHHHHH
Q 038401 521 LNDASRIMNRMN 532 (542)
Q Consensus 521 ~~~A~~~~~~~~ 532 (542)
|++|...|+-..
T Consensus 262 y~~A~~w~~~al 273 (278)
T PF08631_consen 262 YDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHH
Confidence 999999998644
No 276
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.99 E-value=0.058 Score=29.33 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 507 LHHVVAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 507 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
+++.++.+|.+.|++++|.+.|+++.++.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 466788888888888888888888887663
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=2 Score=36.18 Aligned_cols=207 Identities=16% Similarity=0.242 Sum_probs=106.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038401 266 TYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYE 345 (542)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 345 (542)
.|..-..+|...+++++|...+.+..+. ..-|...| -....++.|..+.+++.+. +--...+..-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444555666677777777766655421 01111111 1123345555555555443 222344555566677
Q ss_pred HcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHc---CC--CcCHHHHHHHHHHHHhcCCHHHHH
Q 038401 346 RVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDA---GE--VKDISVFGCMIELFSRNKKYANVI 420 (542)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g~~~~A~ 420 (542)
.+|..+.|-..+++.-+ ....-+++.|++++++...- +. +.-...+......+.+...+.+|.
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 77777766665555321 22345666777777665432 11 011234455556666777777776
Q ss_pred HHHHHHHhC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CchHHH-HH-HHHHHhccCChHHHHHH
Q 038401 421 EVFEKMRSA----GYFPDS-HIIALVLNSYGKLREFETADDLYSEMQEEGCV-FSDQVH-FQ-MLSLYGARKDFNMLESL 492 (542)
Q Consensus 421 ~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-~~-l~~~~~~~g~~~~A~~~ 492 (542)
..+.+-... .--|+. ..+...+-.+.-..++..|.+.++...+.+.. .|+... .. |+.+| ..|+.+++.++
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 655543221 111222 33445555666677888888888776554322 222222 22 44444 46677776665
Q ss_pred HHH
Q 038401 493 FER 495 (542)
Q Consensus 493 ~~~ 495 (542)
+..
T Consensus 250 l~s 252 (308)
T KOG1585|consen 250 LSS 252 (308)
T ss_pred HcC
Confidence 554
No 278
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.62 E-value=0.093 Score=28.80 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 506 ELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
..|..++.+|...|++++|+..++++.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467888888999999999999998887754
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.59 E-value=1.8 Score=34.13 Aligned_cols=49 Identities=6% Similarity=-0.016 Sum_probs=22.3
Q ss_pred hCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 378 AGRIEEATWVFRQAFDAGEVKD-ISVFGCMIELFSRNKKYANVIEVFEKMRS 428 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 428 (542)
.++.+++..++..+.-. +|. +..-..-+..+...|++.+|+.+|+.+..
T Consensus 23 ~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred cCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34555555555554442 222 11111222334555666666666666544
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.52 E-value=0.54 Score=38.37 Aligned_cols=101 Identities=10% Similarity=0.016 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHH--H
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS--HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHF--Q 475 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~ 475 (542)
...+..++..|.+.|+.++|++.|.++.+....|.. ..+..+++.....|++..+...+.++...-....+.... .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 346778899999999999999999999886554543 566778888889999999999988877643111111111 1
Q ss_pred ---HHHHHhccCChHHHHHHHHHHhcCC
Q 038401 476 ---MLSLYGARKDFNMLESLFERLDSDS 500 (542)
Q Consensus 476 ---l~~~~~~~g~~~~A~~~~~~~~~~~ 500 (542)
-+-.+...+++.+|.+.|-......
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 2334556899999998888865443
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.46 E-value=5.8 Score=39.51 Aligned_cols=145 Identities=15% Similarity=0.203 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---Hhc----cCcHH
Q 038401 380 RIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNS---YGK----LREFE 452 (542)
Q Consensus 380 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~---~~~----~g~~~ 452 (542)
+.+.|..+++++.+.|.+...... ..+..+.. ++++.+.-.+..+.+.|..-....-..+... ... ..+.+
T Consensus 379 ~~~~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred CHHHHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchh
Confidence 556666666666665521111111 11222222 5555555555555544332111110011110 111 12455
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHhcc----CChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhh-c--chhhHH
Q 038401 453 TADDLYSEMQEEGCVFSDQVHFQMLSLYGAR----KDFNMLESLFERLDSDSNINKKELHHVVAGIYERA-N--RLNDAS 525 (542)
Q Consensus 453 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~ 525 (542)
.+...|.+....+ +......++..|... .+++.|...+.....++ ....+.++..+... | .+..|.
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~~~a~ 529 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVLHLAK 529 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchhHHHH
Confidence 6666666666655 222222244444332 23666666666644333 22333444444321 1 145666
Q ss_pred HHHHHHHh
Q 038401 526 RIMNRMNK 533 (542)
Q Consensus 526 ~~~~~~~~ 533 (542)
+++++...
T Consensus 530 ~~~~~~~~ 537 (552)
T KOG1550|consen 530 RYYDQASE 537 (552)
T ss_pred HHHHHHHh
Confidence 66666544
No 282
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.33 E-value=0.12 Score=28.34 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=11.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038401 438 IALVLNSYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 464 (542)
|..++.+|...|++++|+..|+++++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.31 E-value=2.2 Score=34.08 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=15.5
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHccCCHH
Q 038401 252 FRLMQRKEIEQNVVTYNTMIKIYGKSLEHE 281 (542)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (542)
++.+.+.+++|+...+..+++.+.+.|++.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 333444455555555555555555555543
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.29 E-value=0.12 Score=28.92 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=10.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHH
Q 038401 439 ALVLNSYGKLREFETADDLYSE 460 (542)
Q Consensus 439 ~~l~~~~~~~g~~~~A~~~~~~ 460 (542)
..+...|.+.|++++|+++|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.28 E-value=3.8 Score=36.70 Aligned_cols=133 Identities=8% Similarity=0.181 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--cC----CHHHHHHHHHHhHhCCC---CccHhHHHHHHHHHhccCc-
Q 038401 70 FDSAISWLQQMEQDRVSGDLVLYSNLIELARK--LS----DYSKAISIFSRLKSSGI---VPDLVAYNTMINVFGKAKL- 139 (542)
Q Consensus 70 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 139 (542)
+++.+.+++.|.+.|+..+..+|.+....... .. ....+..+++.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556778888888888777666654443333 12 24577888888887631 2334445555433 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHC-CC--hHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038401 140 ---FKEARLLIEEMREQGVKPDTV-SYSTLLNLYVEN-HK--FVEALSVFAEMNEVNCPLDLTTCNIMIDVY 204 (542)
Q Consensus 140 ---~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~-g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 204 (542)
.+.++.+|+.+.+.|+..+.. .+.+-+-++... .+ ..++.++++.+.+.++++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 356778888888877665433 222222222222 11 346778888888888887777766554433
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.28 E-value=0.67 Score=40.47 Aligned_cols=79 Identities=22% Similarity=0.151 Sum_probs=51.2
Q ss_pred HHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHh-----CCCCccHhHHH
Q 038401 54 RYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKS-----SGIVPDLVAYN 128 (542)
Q Consensus 54 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 128 (542)
..++..++..+...|+++.+...++++....+ -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.+.+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34566666666667777777777777666542 2666677777777777777777776666554 46667666666
Q ss_pred HHHHH
Q 038401 129 TMINV 133 (542)
Q Consensus 129 ~l~~~ 133 (542)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
No 287
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=2.8 Score=35.13 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=80.5
Q ss_pred HHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CCHHHHHHH
Q 038401 344 YERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRN-KKYANVIEV 422 (542)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~ 422 (542)
|.+.+++++|...++. .+..|...|++..|-..... +...|-.. .+++.|+..
T Consensus 83 cykk~~~~eAv~cL~~-----------aieIyt~~Grf~~aAk~~~~---------------iaEiyEsdl~d~ekaI~~ 136 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEK-----------AIEIYTDMGRFTMAAKHHIE---------------IAEIYESDLQDFEKAIAH 136 (288)
T ss_pred HhhccChHHHHHHHHH-----------HHHHHHhhhHHHHHHhhhhh---------------HHHHHhhhHHHHHHHHHH
Confidence 3455577777766554 24556666666665443332 23333322 456666666
Q ss_pred HHHHHhC--CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHH-----HHH-HHHHHhccCChHHHHH
Q 038401 423 FEKMRSA--GYFPD---SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQV-----HFQ-MLSLYGARKDFNMLES 491 (542)
Q Consensus 423 ~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~-l~~~~~~~g~~~~A~~ 491 (542)
|++.-+. |-..+ ...+.-+...-...|++.+|+.+|++..+.....+..- ++. .+-++.-..+.=.+..
T Consensus 137 YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ 216 (288)
T KOG1586|consen 137 YEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQR 216 (288)
T ss_pred HHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHH
Confidence 6666542 11111 12333444444678999999999999988653223221 111 2223333467667777
Q ss_pred HHHHH-hcCCCCCchhHHHHHHHHH
Q 038401 492 LFERL-DSDSNINKKELHHVVAGIY 515 (542)
Q Consensus 492 ~~~~~-~~~~~~~~~~~~~~l~~~~ 515 (542)
.+++- ..+|...++--+..|-+++
T Consensus 217 ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 217 ALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHhcCCcccccHHHHHHHHHH
Confidence 77774 4567766665555555544
No 288
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.21 E-value=1.4 Score=35.76 Aligned_cols=92 Identities=18% Similarity=0.260 Sum_probs=71.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHh
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEVKD----ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYG 446 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 446 (542)
..-+...|++++|..-|..+++.-+... ...|..-..++.+.+.++.|+.-..+.++ +.|+. ..+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHH
Confidence 4457788999999999999998733222 33455566778899999999999999988 44643 44444567889
Q ss_pred ccCcHHHHHHHHHHHHHcC
Q 038401 447 KLREFETADDLYSEMQEEG 465 (542)
Q Consensus 447 ~~g~~~~A~~~~~~~~~~~ 465 (542)
+..++++|+.-|+++++..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 9999999999999999976
No 289
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.12 E-value=1.6 Score=38.12 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=47.9
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhC-CCCccHhHHHHHHHHHhccCcHHHHHHHHHH-----HHHcCCCCC
Q 038401 85 VSGDLVLYSNLIELARKLSDYSKAISIFSRLKSS-GIVPDLVAYNTMINVFGKAKLFKEARLLIEE-----MREQGVKPD 158 (542)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~g~~~~ 158 (542)
-.++..+....+..++..+++.+-.++++..... +...|...|..+|......|+..-..++.++ +...|+..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 3455566666666667777777766666665543 3344666666777777777766555555443 122344444
Q ss_pred HHHHHHHHHH
Q 038401 159 TVSYSTLLNL 168 (542)
Q Consensus 159 ~~~~~~l~~~ 168 (542)
...-..+-+.
T Consensus 278 ~~L~~~L~~L 287 (292)
T PF13929_consen 278 DELRSQLSEL 287 (292)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 290
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.09 E-value=1.9 Score=32.45 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=29.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 038401 197 CNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKE 259 (542)
Q Consensus 197 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 259 (542)
....+......|.-++..+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444445555555555555555554432 4555555555555555555555555555555554
No 291
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.03 E-value=0.72 Score=39.58 Aligned_cols=117 Identities=15% Similarity=0.259 Sum_probs=68.5
Q ss_pred CCcHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH
Q 038401 16 SPSVFAYNVVLRNVLRA-----KQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLV 90 (542)
Q Consensus 16 ~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 90 (542)
..|-.+|-..+..+... +.++=.-..+..|.+.|+.-|..+|+.|++.+-+..- -|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 34555566666555432 3444455556667777777777777777765533221 111 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcH-HHHHHHHHHHH
Q 038401 91 LYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLF-KEARLLIEEMR 151 (542)
Q Consensus 91 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 151 (542)
.+...+-.|-+ +-+-++.++++|...|+.||-.+-..|++++.+.+-. .+..++.--|.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 11112212222 2345788999999999999999999999999887763 33444444443
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.93 E-value=5.4 Score=37.13 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=31.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 271 IKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRS 327 (542)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (542)
..+.-+.|+++...+........ .++...+..+... ..++++++....+.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45666778888755555444432 2344444444433 77888888877776654
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.86 E-value=2.8 Score=33.55 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 038401 180 SVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKE 259 (542)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 259 (542)
+.++.+.+.+++|+...+..++..+.+.|++... ..+...++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 3344444455555555555566666555554432 223333334444333333222211 122233333333321
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038401 260 IEQNVVTYNTMIKIYGKSLEHEKATNLMQEM 290 (542)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (542)
=...+..++..+...|++-+|.++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012344455555566666666555443
No 294
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.70 E-value=4.9 Score=35.87 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=61.3
Q ss_pred HHhcCHHHHHHHHHHHHhCC--CCCCHH------hHHHHHHHHhccC-CHHHHHHHHHHHHhC--------CCCCCH---
Q 038401 30 LRAKQWELAHGLFDEMRQRG--IAPDRY------TYSTLITCFGKEG-MFDSAISWLQQMEQD--------RVSGDL--- 89 (542)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~~--- 89 (542)
.+.|+.+.|...+.+....- ..|+.. .|+.-.. ....+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788888888887776542 122211 2222222 23344 777777776665332 112222
Q ss_pred --HhHHHHHHHHHhcCCHH---HHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038401 90 --VLYSNLIELARKLSDYS---KAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQ 153 (542)
Q Consensus 90 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 153 (542)
.++..++.++...+..+ +|..+++.+.+.. +..+..+-.-+..+.+.++.+.+.+++.+|+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23444555555555433 3344444443321 212334444455555566666666666666654
No 295
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.69 E-value=9.2 Score=39.03 Aligned_cols=159 Identities=10% Similarity=-0.005 Sum_probs=72.2
Q ss_pred HHhCCHHHHHHHHHHHHHcC----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHH--HHHh
Q 038401 376 ARAGRIEEATWVFRQAFDAG----EVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS---HIIALVL--NSYG 446 (542)
Q Consensus 376 ~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~--~~~~ 446 (542)
...|+++.|.++.+.....- ..+....+..+..+..-.|++++|..+..+..+..-.-+. ..|..+. ..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 44567777777766666431 1223455556666666677777777766655442111122 2222221 2334
Q ss_pred ccCc--HHHHHHHHHHHHHcCC-CCch----HHHHH-HHHHHhc-cCChHHHHHHHHHHhcC-CCC-CchhHHHHHHHHH
Q 038401 447 KLRE--FETADDLYSEMQEEGC-VFSD----QVHFQ-MLSLYGA-RKDFNMLESLFERLDSD-SNI-NKKELHHVVAGIY 515 (542)
Q Consensus 447 ~~g~--~~~A~~~~~~~~~~~~-~~~~----~~~~~-l~~~~~~-~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~ 515 (542)
..|+ +++....+........ ..|- ..... +.+++.+ .+.-.+|...++-.... +.. .....+..|+.++
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 5552 3333333333332210 0111 11111 3333333 22233333333332211 111 1112234667777
Q ss_pred HhhcchhhHHHHHHHHHhc
Q 038401 516 ERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~ 534 (542)
...|+.++|...+.++...
T Consensus 629 ~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 629 FLRGDLDKALAQLDELERL 647 (894)
T ss_pred HhcCCHHHHHHHHHHHHHH
Confidence 7777777777777776553
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.58 E-value=0.2 Score=27.35 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=12.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038401 438 IALVLNSYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 464 (542)
+..++..+...|++++|++.|+++++.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334444455555555555555555443
No 297
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.38 E-value=1.2 Score=39.07 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHH
Q 038401 369 ETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRS-----AGYFPDSHIIALVLN 443 (542)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~~ 443 (542)
..++..+...|+++.+.+.+++.+... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+......
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 345566777788888888888888763 46788888889999999999999888888765 377777666655444
Q ss_pred H
Q 038401 444 S 444 (542)
Q Consensus 444 ~ 444 (542)
.
T Consensus 236 ~ 236 (280)
T COG3629 236 I 236 (280)
T ss_pred H
Confidence 3
No 298
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.32 E-value=0.21 Score=27.30 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 506 ELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
..|..++.+|...|++++|...|++..+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 468889999999999999999999987644
No 299
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.29 E-value=10 Score=38.40 Aligned_cols=117 Identities=8% Similarity=-0.044 Sum_probs=72.1
Q ss_pred hCCHHHHHHHHHHHHHcC-CCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 038401 378 AGRIEEATWVFRQAFDAG-EVKD--ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETA 454 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 454 (542)
..+.+.|...+....... ..+. ..++..++......+...+|...+....... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 456688888888765443 2221 2334444444444433566666666554322 2444455555555688899988
Q ss_pred HHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhc
Q 038401 455 DDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDS 498 (542)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 498 (542)
...+..|.... .....+.. ++.++...|+.++|...++++..
T Consensus 332 ~~~i~~L~~~~--~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEA--KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhh--ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888875543 12333444 78887788999999999999753
No 300
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.15 E-value=1.6 Score=35.01 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccC-----------cHHHHHHHHHHHHHcCCCCchHHHHH
Q 038401 417 ANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLR-----------EFETADDLYSEMQEEGCVFSDQVHFQ 475 (542)
Q Consensus 417 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~ 475 (542)
++|+.-|++++. +.|+. .++..++.+|...+ .+++|..+|+++.+.. |+...|.
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~---P~ne~Y~ 117 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED---PNNELYR 117 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC---CCcHHHH
Confidence 344444555555 55654 55666666665433 2556666666666654 5555554
No 301
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.10 E-value=7.9 Score=36.49 Aligned_cols=64 Identities=9% Similarity=0.017 Sum_probs=44.6
Q ss_pred HHHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCC
Q 038401 475 QMLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRTFN 538 (542)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 538 (542)
.++.+++-+|++++|..++... ...+...+..+......+=...|+...|...+++-+--...|
T Consensus 624 nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~~~~v~ 688 (696)
T KOG2471|consen 624 NLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTHVSFVP 688 (696)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcccccccC
Confidence 3889999999999999999652 222322244444444445567899999999999866554444
No 302
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.01 E-value=1.9 Score=36.45 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=59.5
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHhccCcHH-------HHHHHHHHHHHcCCCC-----chHH
Q 038401 411 SRNKKYANVIEVFEKMRS----AGYFPD--SHIIALVLNSYGKLREFE-------TADDLYSEMQEEGCVF-----SDQV 472 (542)
Q Consensus 411 ~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~~-----~~~~ 472 (542)
.....+++|++.|.-++- .+.+|. ...+..+.+.|...|+.+ .|.+.|.++.+....+ ....
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 344566667666665432 133343 255667778888888744 5666666666544221 1233
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHhcCCCCCc
Q 038401 473 HFQMLSLYGARKDFNMLESLFERLDSDSNINK 504 (542)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 504 (542)
.|.++.+..+.|++++|.++|.++...++.+.
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 44478888899999999999999877766543
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.00 E-value=0.18 Score=27.70 Aligned_cols=31 Identities=13% Similarity=0.399 Sum_probs=17.5
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038401 389 RQAFDAGEVKDISVFGCMIELFSRNKKYANVI 420 (542)
Q Consensus 389 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 420 (542)
+++++.. |.+...|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444432 345666666666666666666654
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.90 E-value=2.4 Score=34.61 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHH---HHHHHHHHhccCChHHHHHHHHHHhcCCCCC-ch----hH
Q 038401 436 HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQV---HFQMLSLYGARKDFNMLESLFERLDSDSNIN-KK----EL 507 (542)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~----~~ 507 (542)
..+..++.-|.+.|+.++|.+.|.++.+.. ..+... .+.++.+....|++..+...+.+....+... +. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 567788999999999999999999988865 334333 2237788888999999999999864332211 11 11
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 508 HHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 508 ~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
-..-+-.+...|++.+|.+.|-...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 1122334456788999988887643
No 305
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.81 E-value=7 Score=35.09 Aligned_cols=131 Identities=19% Similarity=0.324 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHh--c----CcHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHccCCH-
Q 038401 211 KDADRLFWSMRKMGIDPSVVSYNTLLRVYGE--A----ELFGEAIHLFRLMQRKEIE---QNVVTYNTMIKIYGKSLEH- 280 (542)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~- 280 (542)
++...+++.+.+.|+..+..++-+....... . ....++..+|+.|.+..+. ++...+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455666777777766666555443222222 1 1245677777777776432 233344444333 33333
Q ss_pred ---HHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038401 281 ---EKATNLMQEMQNRGIEPNA--ITYSTIIAIWGKAGK--LDRAAMLFQKLRSSGVEIDPVLYQTMIVA 343 (542)
Q Consensus 281 ---~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (542)
+.+..+++.+.+.|+..+- ...+.++..+..... ..++.++++.+.+.++++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 3455666666666655432 233344433322222 34677777788888777777666655433
No 306
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.70 E-value=12 Score=37.74 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=25.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Q 038401 129 TMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVEN 172 (542)
Q Consensus 129 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 172 (542)
.+|-.|.++|++++|.++....... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4455677788888888877554433 333445566666666654
No 307
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.67 E-value=3.4 Score=31.16 Aligned_cols=64 Identities=16% Similarity=0.331 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 401 SVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 401 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
......+..+..+|+-+.-.+++..+.+ +-.|++..+..+..+|.+.|+..++.+++.++.+.|
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344445566666776666666666654 234666666677777777777777777777777766
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.64 E-value=2.6 Score=33.18 Aligned_cols=82 Identities=15% Similarity=0.040 Sum_probs=53.6
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH
Q 038401 400 ISVFGCMIEL---FSRNKKYANVIEVFEKMRSAGYFPDSHII-ALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ 475 (542)
Q Consensus 400 ~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 475 (542)
..+.+.|+.. -...++.+++..++..+.- ++|..... ..-...+...|+|.+|+.+++.+.+.. +..+..-.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kA 82 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKA 82 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHH
Confidence 3445555544 4578899999999999987 56765332 233456778999999999999987765 12222223
Q ss_pred -HHHHHhccCC
Q 038401 476 -MLSLYGARKD 485 (542)
Q Consensus 476 -l~~~~~~~g~ 485 (542)
++.++...|+
T Consensus 83 LlA~CL~~~~D 93 (160)
T PF09613_consen 83 LLALCLYALGD 93 (160)
T ss_pred HHHHHHHHcCC
Confidence 4455545554
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.03 E-value=3 Score=40.20 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 038401 336 LYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKK 415 (542)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 415 (542)
..+.+...+.+.|-.++|+.+-.. ...-.....+.|+++.|.++..+. .+..-|..|.++....|+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D--------~d~rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD--------PDQRFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC--------hhhhhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhccc
Confidence 445566666777777777654221 112234556778888888776654 456778899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHH
Q 038401 416 YANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 416 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (542)
+..|.+.|.+... |..|+-.+...|+.+.-..+-+...+.+ ..+. ...+|...|+++++.+++.+
T Consensus 682 l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g--~~N~----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 682 LPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG--KNNL----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc--ccch----HHHHHHHcCCHHHHHHHHHh
Confidence 9999988887765 3345556666777666555555565555 1121 23456678999999888876
Q ss_pred HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHH
Q 038401 496 LDSDSNINKKELHHVVAGIYERANRLNDASRIMNR 530 (542)
Q Consensus 496 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 530 (542)
-..-|. .+ .+++.|+. .+..+-..++++
T Consensus 747 t~r~pe----Aa--l~ArtYlp-s~vs~iv~~wk~ 774 (794)
T KOG0276|consen 747 TQRLPE----AA--LFARTYLP-SQVSRIVELWKE 774 (794)
T ss_pred cCcCcH----HH--HHHhhhCh-HHHHHHHHHHHH
Confidence 533221 22 34555554 234444444443
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.79 E-value=4.5 Score=31.35 Aligned_cols=49 Identities=8% Similarity=0.118 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 413 NKKYANVIEVFEKMRSAGYFPDS---HIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 413 ~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.++.+++..++..|.- ++|+. .++. ...+...|+|.+|.++++...+..
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 4555555555555544 33332 1221 223344555555555555555443
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.75 E-value=6.3 Score=32.20 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=26.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 408 ELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 408 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
+.....|.+++|+..++.....+. .+.....-++.+...|+.++|+.-|+++++.+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 344455555555555554443221 11222233445555555555555555555543
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.65 E-value=0.37 Score=42.46 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhc
Q 038401 405 CMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGA 482 (542)
Q Consensus 405 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 482 (542)
.-+.-|.++|.+++|+..|.+... +.| |.+++..-..+|.+..++..|..-...++..+. .-.-.|. -+.+-..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQARES 177 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHHH
Confidence 346678889999999999988887 456 778887778889999888888888887776540 1111111 3333334
Q ss_pred cCChHHHHHHHHH-HhcCCC
Q 038401 483 RKDFNMLESLFER-LDSDSN 501 (542)
Q Consensus 483 ~g~~~~A~~~~~~-~~~~~~ 501 (542)
.|+..+|.+-.+. +...|.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcc
Confidence 5666666666666 344443
No 313
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.46 E-value=7.3 Score=32.39 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHH--
Q 038401 299 AITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILA-- 376 (542)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-- 376 (542)
+..|+.+.--+...|+++.|.+.|+...+.+..-+-...|.-+. +.-.|+++-|.+-+...-+.++......+..|.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34566666666677777777777777777643333333333222 223566777766665555444433333333332
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHhccC
Q 038401 377 RAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD-------SHIIALVLNSYGKLR 449 (542)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g 449 (542)
..-++.+|..-+.+--+ ..|..-|...+-.|.- |+.. ...+++++... -..+ ..||-.+..-+...|
T Consensus 178 ~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccc
Confidence 22345555443332221 2344444443333221 2211 12334444431 1111 245666677777778
Q ss_pred cHHHHHHHHHHHHHcC
Q 038401 450 EFETADDLYSEMQEEG 465 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~ 465 (542)
+.++|..+|+-++..+
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 8888888887777654
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.14 E-value=5.3 Score=30.99 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=57.7
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHhccCChHHHHHHHHHHhcCCCCCc--------------hhHHH
Q 038401 446 GKLREFETADDLYSEMQEEGCVFSDQVHFQ--MLSLYGARKDFNMLESLFERLDSDSNINK--------------KELHH 509 (542)
Q Consensus 446 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~ 509 (542)
...++.+++..++..+.-.. |...... -+..+...|++++|..+|+.+...+...+ +..|.
T Consensus 21 L~~~d~~D~e~lLdALrvLr---P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr 97 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR---PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWH 97 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC---CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHH
Confidence 45899999999999998876 4333332 56788899999999999999887664432 12344
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHh
Q 038401 510 VVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 510 ~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
..+......|.-.+|..+.+.+..
T Consensus 98 ~~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 98 VHADEVLARDADADAVALVRALLG 121 (153)
T ss_pred HHHHHHHHhCCCHhHHHHHHHHhc
Confidence 444444445555566666665553
No 315
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.92 E-value=9.4 Score=32.64 Aligned_cols=201 Identities=14% Similarity=0.056 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHH-
Q 038401 125 VAYNTMINVFGKAKLFKEARLLIEEMREQ-GVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMID- 202 (542)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 202 (542)
..+......+...+.+..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444445555555555555555554431 112233444444455555555555555555555432221 111111112
Q ss_pred HHhccCCHHHHHHHHHHHHHCCC--CCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCH
Q 038401 203 VYGQLDMAKDADRLFWSMRKMGI--DPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEH 280 (542)
Q Consensus 203 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (542)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555555555555555533110 0111222222222344555555555555555432111234444444455555555
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038401 281 EKATNLMQEMQNRGIEPN-AITYSTIIAIWGKAGKLDRAAMLFQKLRSS 328 (542)
Q Consensus 281 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (542)
+.+...+...... .|+ ...+..+...+...+..+.+...+......
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555443 222 222222222222344455555555444443
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.85 E-value=2.8 Score=34.48 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHH
Q 038401 382 EEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA---GYFPDSHIIALVLNSYGKLREFETA 454 (542)
Q Consensus 382 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A 454 (542)
+.|.+.|-++...+.-.++...-.|+..|. ..+.++++.++.++++. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344455555544443344444444444333 44556666666555542 2234555666666666666665555
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.81 E-value=0.5 Score=27.25 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 506 ELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
..+..++.+|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567888888889999999998888654
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.72 E-value=0.41 Score=25.78 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=11.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc
Q 038401 441 VLNSYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~~~~~ 464 (542)
++.++.+.|++++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344444455555555555555444
No 319
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=20 Score=35.98 Aligned_cols=120 Identities=9% Similarity=-0.000 Sum_probs=58.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHhccC
Q 038401 409 LFSRNKKYANVIEVFEKMRSAGYFPDSH--IIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ--MLSLYGARK 484 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g 484 (542)
++..-|+-++|..+.++|.... .|-.. -.-.++.+|+-.|+..-..+++.-++... .+.+-.. ++-.+.-..
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~---nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV---NDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccccc---chHHHHHHHHHheeeEec
Confidence 3445566666666777666532 22111 11133445666666666666665555432 2332222 344455556
Q ss_pred ChHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 485 DFNMLESLFERLDSDSNINK-KELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 485 ~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
+.+......+-+....++.- ..+-..|+=+|.-.|. .+|+.+++-|..
T Consensus 586 dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 66666666666554443222 1223334444444443 566666666554
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=18 Score=35.32 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCC
Q 038401 301 TYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGR 380 (542)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 380 (542)
..+.+++.+.+.|-.++|+++ .+|+... .....+.|+++.|.++..+. .+..-|..+..+..+.|+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhccc
Confidence 445556666666666655532 3343332 23345778888888877654 356678888999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 038401 381 IEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSE 460 (542)
Q Consensus 381 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (542)
+..|.+.|.++.+ |..|+-.+...|+-+....+-....+.|. +... ..+|...|+++++.+++.+
T Consensus 682 l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~--~N~A----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 682 LPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK--NNLA----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc--cchH----HHHHHHcCCHHHHHHHHHh
Confidence 9999988887754 45666677777877666666555555542 2222 2366778999988887765
Q ss_pred HHH
Q 038401 461 MQE 463 (542)
Q Consensus 461 ~~~ 463 (542)
-.+
T Consensus 747 t~r 749 (794)
T KOG0276|consen 747 TQR 749 (794)
T ss_pred cCc
Confidence 543
No 321
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.53 E-value=8.1 Score=34.15 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=58.8
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHH
Q 038401 189 NCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMG---IDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVV 265 (542)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 265 (542)
|.+....+....+..-....+++.+...+-.+.... ..|+...+ ..++.+ -.-+.++++.++..=+..|+.||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 444455555555555555566666666665554321 11111111 122222 2235557777776666777777777
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038401 266 TYNTMIKIYGKSLEHEKATNLMQEMQNR 293 (542)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (542)
+++.+++.+.+.+++.+|..+...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777776666544
No 322
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=6.5 Score=33.23 Aligned_cols=81 Identities=11% Similarity=0.043 Sum_probs=40.9
Q ss_pred hCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHH
Q 038401 378 AGRIEEATWVFRQAFDAGEVKDI-SVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSH-IIALVLNSYGKLREFETAD 455 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 455 (542)
..+++.|+..|.+++.. .|+. ..|..-+.++.+..+++.+..--.+.++ +.||.. ..-.+...+.....+++|+
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 34555555555555553 2332 3444455555555666655555555555 445442 2223344444555556666
Q ss_pred HHHHHHH
Q 038401 456 DLYSEMQ 462 (542)
Q Consensus 456 ~~~~~~~ 462 (542)
..++++.
T Consensus 99 ~~Lqra~ 105 (284)
T KOG4642|consen 99 KVLQRAY 105 (284)
T ss_pred HHHHHHH
Confidence 6666553
No 323
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.09 E-value=18 Score=34.48 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=47.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHH---HhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038401 440 LVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSL---YGARKDFNMLESLFERLDSDSNINKKELHHVVAGIY 515 (542)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 515 (542)
.+++-+.+.|-.++|+..|..+.... ||....+. ++.. ...+| ...++.+++.+....+ .++..|.-....=
T Consensus 465 ~~l~~~~e~~~~~~ark~y~~l~~lp--p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 465 KYLDWAYESGGYKKARKVYKSLQELP--PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG-ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhCC--CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC-CChHHHHHHHHhh
Confidence 34555556666777777777766653 23333333 3322 22344 5556666666554444 2334444433333
Q ss_pred HhhcchhhHHHHHHHHH
Q 038401 516 ERANRLNDASRIMNRMN 532 (542)
Q Consensus 516 ~~~g~~~~A~~~~~~~~ 532 (542)
...|+.+.+-.++.++.
T Consensus 541 ~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAM 557 (568)
T ss_pred ccCCCcccccHHHHHHH
Confidence 45666666666666644
No 324
>PRK09687 putative lyase; Provisional
Probab=90.09 E-value=13 Score=33.08 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 038401 406 MIELFSRNKKYANVIEVFEKMRS 428 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~ 428 (542)
.+.++...|.. +|+..+.++.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHh
Confidence 34444444443 34444444443
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.04 E-value=0.61 Score=25.38 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 403 FGCMIELFSRNKKYANVIEVFEKMRS 428 (542)
Q Consensus 403 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 428 (542)
|..+...|...|++++|...|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444445555555555555555444
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.00 E-value=24 Score=35.87 Aligned_cols=182 Identities=12% Similarity=0.084 Sum_probs=90.2
Q ss_pred HHHHHHHHHh-CCCCCCH--HhHHHHHHHHh-ccCCHHHHHHHHHHHHhCCCCCCHH-----hHHHHHHHHHhcCCHHHH
Q 038401 38 AHGLFDEMRQ-RGIAPDR--YTYSTLITCFG-KEGMFDSAISWLQQMEQDRVSGDLV-----LYSNLIELARKLSDYSKA 108 (542)
Q Consensus 38 A~~~~~~~~~-~~~~~~~--~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a 108 (542)
|+..++.+.+ ..++|.. .++-.+...+. ...+++.|...+++.....-.++.. .-..+++.+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4455555553 2333322 24445555554 5677888888887664432222211 1223445555555444 7
Q ss_pred HHHHHHhHhC----CCCccHhHHHHH-HHHHhccCcHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--HCCChHHH
Q 038401 109 ISIFSRLKSS----GIVPDLVAYNTM-INVFGKAKLFKEARLLIEEMREQG---VKPDTVSYSTLLNLYV--ENHKFVEA 178 (542)
Q Consensus 109 ~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~--~~g~~~~a 178 (542)
...+++.++. +..+-...|..+ +..+...+++..|.+.++.+...- ..|-...+..++.+.. +.+..+.+
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 7777765543 111223333333 233333367888888777765431 2233444444444443 34545666
Q ss_pred HHHHHHHHhcC---------CCCChhhHHHHHHHHh--ccCCHHHHHHHHHHH
Q 038401 179 LSVFAEMNEVN---------CPLDLTTCNIMIDVYG--QLDMAKDADRLFWSM 220 (542)
Q Consensus 179 ~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 220 (542)
.+.++.+.... .+|...+|..+++.++ ..|+++.+...++.+
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666553211 1234555666655543 455555555554444
No 327
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.87 E-value=3 Score=29.38 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038401 72 SAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLK 116 (542)
Q Consensus 72 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 116 (542)
++.+.++.+......|++....+.+++|.+.+|+..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444555555555555555555555555566666655555554
No 328
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.72 E-value=9.3 Score=33.79 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=74.5
Q ss_pred CCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 038401 224 GIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKE---IEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAI 300 (542)
Q Consensus 224 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 300 (542)
|.+....+...++..-....+++.+...+-++...- ..++.. -...++.+.+ -++++++.++..=..-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 445556666666666666788899988887776541 112211 1223333333 36778998888888899999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038401 301 TYSTIIAIWGKAGKLDRAAMLFQKLRSS 328 (542)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (542)
+++.++..+.+.+++..|..+...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988877654
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.70 E-value=0.83 Score=26.27 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038401 436 HIIALVLNSYGKLREFETADDLYSEMQE 463 (542)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 463 (542)
.+++.+...|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777777655
No 330
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.16 E-value=16 Score=32.82 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=12.3
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 038401 311 KAGKLDRAAMLFQKLRSS 328 (542)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~ 328 (542)
..+++..+...+......
T Consensus 53 ~~~~~~~a~~~~~~a~~~ 70 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL 70 (292)
T ss_pred ccccHHHHHHHHHHhhhc
Confidence 456677777777777664
No 331
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.92 E-value=20 Score=33.37 Aligned_cols=64 Identities=20% Similarity=0.116 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 038401 298 NAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEI---DPVLYQTMIVAYERVGLVAHAKRLLHELR 361 (542)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (542)
...+|..+...+.+.|.++.|...+..+...+... ++.+...-....-..|+..+|...++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456666777777777777777777766543111 23333444455556667777776666544
No 332
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.89 E-value=13 Score=31.39 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=77.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-hCCHHHHHHHHH
Q 038401 311 KAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILAR-AGRIEEATWVFR 389 (542)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 389 (542)
+.+++++|...++.. +..|...|++..|-+...+ +...|-. ..+++.|+..|+
T Consensus 85 kk~~~~eAv~cL~~a---------------ieIyt~~Grf~~aAk~~~~-----------iaEiyEsdl~d~ekaI~~YE 138 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKA---------------IEIYTDMGRFTMAAKHHIE-----------IAEIYESDLQDFEKAIAHYE 138 (288)
T ss_pred hccChHHHHHHHHHH---------------HHHHHhhhHHHHHHhhhhh-----------HHHHHhhhHHHHHHHHHHHH
Confidence 444666665555444 4456677777776654333 2233332 256677777777
Q ss_pred HHHHc--CCCcCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------HHHHHHhccCcHHHHHHHH
Q 038401 390 QAFDA--GEVKDISV---FGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIA------LVLNSYGKLREFETADDLY 458 (542)
Q Consensus 390 ~~~~~--~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~------~l~~~~~~~g~~~~A~~~~ 458 (542)
++-+- |...+... +--....-...+++.+|+.+|++.....+..+..-|. ..+-++.-..+.-.+...+
T Consensus 139 ~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~AL 218 (288)
T KOG1586|consen 139 QAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRAL 218 (288)
T ss_pred HHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHH
Confidence 76542 11122222 2222333456799999999999998765443332222 1111222336776777778
Q ss_pred HHHHHcCCCCchHHHHHHHHHHh
Q 038401 459 SEMQEEGCVFSDQVHFQMLSLYG 481 (542)
Q Consensus 459 ~~~~~~~~~~~~~~~~~l~~~~~ 481 (542)
++-.+..+...+..-..++.-+.
T Consensus 219 eky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 219 EKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHhcCCcccccHHHHHHHHHH
Confidence 88877764333433333443333
No 333
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.85 E-value=8.7 Score=29.22 Aligned_cols=70 Identities=6% Similarity=-0.023 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH-hcCCC
Q 038401 432 FPDSHIIALVLNSYGKLR---EFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL-DSDSN 501 (542)
Q Consensus 432 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~ 501 (542)
.++..+--.+.+++.+.. +.++.+.+++.+.+...+.....+.. ++-.+.+.|+++++.++++.+ ..+|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 456666666777776554 46677888888876321111222222 777888888888888888884 44444
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.77 E-value=6.9 Score=27.98 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038401 73 AISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLK 116 (542)
Q Consensus 73 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 116 (542)
..+.++.+......|++....+.+++|.+.+++..|.++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555554
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.75 E-value=11 Score=30.39 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 038401 382 EEATWVFRQAFDAGEVKDISVFGCMIELFSRNKK-----------YANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLRE 450 (542)
Q Consensus 382 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 450 (542)
++|+.-|++++...+ ....++..++.+|...+. +++|.+.|+++.. .+|+...|..-+...
T Consensus 52 edAisK~eeAL~I~P-~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~----- 123 (186)
T PF06552_consen 52 EDAISKFEEALKINP-NKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA----- 123 (186)
T ss_dssp HHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH-----
Confidence 556667777776432 234566666766654332 6667777777776 669999988766654
Q ss_pred HHHHHHHHHHHHHcC
Q 038401 451 FETADDLYSEMQEEG 465 (542)
Q Consensus 451 ~~~A~~~~~~~~~~~ 465 (542)
.+|-++..++.+++
T Consensus 124 -~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 124 -AKAPELHMEIHKQG 137 (186)
T ss_dssp -HTHHHHHHHHHHSS
T ss_pred -HhhHHHHHHHHHHH
Confidence 34666777776654
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.69 E-value=0.66 Score=23.53 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhcchhhHHHHHH
Q 038401 508 HHVVAGIYERANRLNDASRIMN 529 (542)
Q Consensus 508 ~~~l~~~~~~~g~~~~A~~~~~ 529 (542)
...++.++...|++++|.+.++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455566666666666665553
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.53 E-value=3.2 Score=36.90 Aligned_cols=93 Identities=12% Similarity=-0.018 Sum_probs=70.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLRE 450 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 450 (542)
-..-|.++|.+++|+..|...+... +.+++++..-..+|.+..++..|..-.+.++..+- .-...|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999998863 34888888889999999999999988888876320 112344444445556678
Q ss_pred HHHHHHHHHHHHHcC
Q 038401 451 FETADDLYSEMQEEG 465 (542)
Q Consensus 451 ~~~A~~~~~~~~~~~ 465 (542)
.++|.+-++.+++..
T Consensus 181 ~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 181 NMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHhHHHHHhhC
Confidence 888888888888865
No 338
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.40 E-value=4.1 Score=28.75 Aligned_cols=62 Identities=8% Similarity=0.140 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 038401 34 QWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLI 96 (542)
Q Consensus 34 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 96 (542)
+.=++.+-++.+...++-|++....+.+++|.+.+++..|.++|+..... +..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 44467788888888889999999999999999999999999999987633 122344555544
No 339
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.27 E-value=7.5 Score=27.80 Aligned_cols=76 Identities=7% Similarity=0.185 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCHH--HHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038401 21 AYNVVLRNVLRAKQWE--LAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIE 97 (542)
Q Consensus 21 ~~~~ll~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 97 (542)
.|..--..+....+.+ +..+-++.+...++-|++.+..+.+++|.+.+++..|.++|+-.... +.+....|..+++
T Consensus 10 eF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 3444444444444333 67778888888889999999999999999999999999999988654 2222225665553
No 340
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.25 E-value=7.6 Score=32.87 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=59.4
Q ss_pred HhccCcHHHHHHHHHHHHHcC---CCCchH--HHHH-HHHHHhccCCh-------HHHHHHHHHH-hcCCC----CCchh
Q 038401 445 YGKLREFETADDLYSEMQEEG---CVFSDQ--VHFQ-MLSLYGARKDF-------NMLESLFERL-DSDSN----INKKE 506 (542)
Q Consensus 445 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~--~~~~-l~~~~~~~g~~-------~~A~~~~~~~-~~~~~----~~~~~ 506 (542)
+.....+++|++.|..++-.. ..+|.. ..+. ++++|...|+- ..|.+.|++. ..... .+...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 344556677777666654321 112322 2233 88999998884 4555555553 22211 12236
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHhcCCCC
Q 038401 507 LHHVVAGIYERANRLNDASRIMNRMNKRRTFN 538 (542)
Q Consensus 507 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 538 (542)
..+.+|.++.+.|++++|.+.|.++...+-.+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 67789999999999999999999988766444
No 341
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.10 E-value=24 Score=33.47 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=56.3
Q ss_pred HHHcCCHHHHHHHHHHhcC---CC-C--------CCHHHHHHHHHHhCCHHHHHHHHHHHHH-------cCCCcC-----
Q 038401 344 YERVGLVAHAKRLLHELRQ---PN-T--------IPRETAITILARAGRIEEATWVFRQAFD-------AGEVKD----- 399 (542)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~---~~-~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~----- 399 (542)
+...|++.+|.+++..... ++ . ..|+.+.-...+.|.+..+..+|.++++ .|.+|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4456677777776655421 11 1 1123333344455666666666655553 333331
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 038401 400 ------ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYG 446 (542)
Q Consensus 400 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 446 (542)
..+|| .+-.|...|++-.|.+.|.+.+.. +..++..|..+..+|.
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 12333 234566778888888888777653 4557777877777775
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.99 E-value=31 Score=34.53 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhHhCCCCccHhHHHHHHH--H-HhccCcHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHCC-
Q 038401 105 YSKAISIFSRLKSSGIVPDLVAYNTMIN--V-FGKAKLFKEARLLIEEMRE-------QGVKPDTVSYSTLLNLYVENH- 173 (542)
Q Consensus 105 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~l~~~~~~~g- 173 (542)
...+.++++...+.| .........++- + +....+.+.|...|+...+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g-~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc-chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 456777777766655 112222222222 2 3355677777777777765 33 2223344455554432
Q ss_pred ----ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH--hcCcHH
Q 038401 174 ----KFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQ-LDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYG--EAELFG 246 (542)
Q Consensus 174 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~ 246 (542)
+.+.|..++....+.|. |+.......+..... ..+...|.++|....+.|. +....+..++.... ...+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHH
Confidence 44556666666666552 222222222221111 2345566666666666552 22211111111111 223455
Q ss_pred HHHHHHHHHHhcC
Q 038401 247 EAIHLFRLMQRKE 259 (542)
Q Consensus 247 ~a~~~~~~~~~~~ 259 (542)
.|..++.+....|
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 6666666665554
No 343
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.98 E-value=33 Score=34.88 Aligned_cols=184 Identities=14% Similarity=0.115 Sum_probs=111.2
Q ss_pred hhhhhHHHHhhCCCCCcHH--HHHHHHHHHH-HhcCHHHHHHHHHHHHhCCCCCCHH-----hHHHHHHHHhccCCHHHH
Q 038401 2 SVAILDWINEEARYSPSVF--AYNVVLRNVL-RAKQWELAHGLFDEMRQRGIAPDRY-----TYSTLITCFGKEGMFDSA 73 (542)
Q Consensus 2 A~~~~~~~~~~~~~~~~~~--~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a 73 (542)
|++.++.+.+...++|..+ ++-.+...+. ...+++.|...+++.....-.++.. ....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4666777776666666654 4556666666 6789999999999775543222222 2335566666666555 8
Q ss_pred HHHHHHHHhCC----CCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHhHhCC---CCccHhHHHHHHHHHh--ccCcHHHH
Q 038401 74 ISWLQQMEQDR----VSGDLVLYSNL-IELARKLSDYSKAISIFSRLKSSG---IVPDLVAYNTMINVFG--KAKLFKEA 143 (542)
Q Consensus 74 ~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a 143 (542)
...+++..+.- ..+-...|..+ +..+...+++..|.+.++.+.... ..|-..++-.++.+.. +.+..+.+
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 88888866541 11222333333 333334479999999998877532 2444455555554443 45656777
Q ss_pred HHHHHHHHHcC---------CCCCHHHHHHHHHHHH--HCCChHHHHHHHHHHH
Q 038401 144 RLLIEEMREQG---------VKPDTVSYSTLLNLYV--ENHKFVEALSVFAEMN 186 (542)
Q Consensus 144 ~~~~~~~~~~g---------~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 186 (542)
.+.++.+.... ..|...+|..+++.++ ..|+++.+...++++.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777664321 1345666777766554 5778777777666653
No 344
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.90 E-value=0.75 Score=27.05 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=15.9
Q ss_pred HHHHHhccCChHHHHHHHHHHhc
Q 038401 476 MLSLYGARKDFNMLESLFERLDS 498 (542)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~~ 498 (542)
++.+|...|+.+.|+++++.+..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 66677777777777777777553
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.79 E-value=6.9 Score=33.95 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=43.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--CCCchHHHHH---HHHH
Q 038401 407 IELFSRNKKYANVIEVFEKMRSA--GYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG--CVFSDQVHFQ---MLSL 479 (542)
Q Consensus 407 ~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~---l~~~ 479 (542)
|.+++..+++.++....-+--+. .++ ..+...-|-.|.+.|....+.++-...+... ...|+..... +..+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklP--pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLP--PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 45666667777666544333221 122 2334444445667777666666666655432 1122211111 3445
Q ss_pred HhccCChHHHHHHH
Q 038401 480 YGARKDFNMLESLF 493 (542)
Q Consensus 480 ~~~~g~~~~A~~~~ 493 (542)
+.-.|.+++|++++
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 55567777777666
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.94 E-value=13 Score=30.71 Aligned_cols=79 Identities=10% Similarity=0.084 Sum_probs=51.6
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhc---CCCCChhhHHHHHHHHhccCCH
Q 038401 134 FGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEV---NCPLDLTTCNIMIDVYGQLDMA 210 (542)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 210 (542)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++....+. +-.+|+..+..|+..+.+.+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 556677777766655555555555555554 67777787777776553 2256777888888888888887
Q ss_pred HHHH
Q 038401 211 KDAD 214 (542)
Q Consensus 211 ~~a~ 214 (542)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7763
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.87 E-value=2.5 Score=28.51 Aligned_cols=46 Identities=2% Similarity=0.083 Sum_probs=20.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHH
Q 038401 412 RNKKYANVIEVFEKMRSAGYFPDS--HIIALVLNSYGKLREFETADDL 457 (542)
Q Consensus 412 ~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 457 (542)
...+.++|+..|+..++.-..|.. .++..++.+|+..|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555443222111 3344444555555555544443
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.91 E-value=1.8 Score=22.49 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHhc
Q 038401 507 LHHVVAGIYERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 507 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 534 (542)
.|..++.+|...|++++|...+++..+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 5677888888888888888888877654
No 349
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.59 E-value=29 Score=31.80 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhc---cCcHHHHHHH
Q 038401 382 EEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGK---LREFETADDL 457 (542)
Q Consensus 382 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~A~~~ 457 (542)
+.-+.+++++++.+ +.+...+..++..+.+..+.++..+-+++++... | +...|...+..... .-.+++....
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 44556666666663 2556666666666666666666666677776632 3 34555555543322 2234555555
Q ss_pred HHHHHH
Q 038401 458 YSEMQE 463 (542)
Q Consensus 458 ~~~~~~ 463 (542)
|.+.++
T Consensus 125 y~~~l~ 130 (321)
T PF08424_consen 125 YEKCLR 130 (321)
T ss_pred HHHHHH
Confidence 555443
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.44 E-value=2.7 Score=28.35 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=31.5
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHhccCChHHHHHHHHH
Q 038401 447 KLREFETADDLYSEMQEEGCVFSDQVHFQ--MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 447 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~ 495 (542)
..++.++|+..|.++++....+|+..... +..+|+..|++.+++++.-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888877654444322222 56777777877777655443
No 351
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.03 E-value=48 Score=33.84 Aligned_cols=452 Identities=9% Similarity=0.000 Sum_probs=219.0
Q ss_pred HHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--cCCHHHHHHHHHHhHhCCCCccHhHHHHHH
Q 038401 54 RYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARK--LSDYSKAISIFSRLKSSGIVPDLVAYNTMI 131 (542)
Q Consensus 54 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 131 (542)
...|.....+ .+.|++..+.++...+... +. ..|......... ...+++....+++-.. .+.....-...+
T Consensus 34 r~~f~~A~~a-~~~g~~~~~~~~~~~l~d~--pL--~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l 106 (644)
T PRK11619 34 RQRYQQIKQA-WDNRQMDVVEQLMPTLKDY--PL--YPYLEYRQLTQDLMNQPAVQVTNFIRANPT--LPPARSLQSRFV 106 (644)
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHhccCC--Cc--HhHHHHHHHHhccccCCHHHHHHHHHHCCC--CchHHHHHHHHH
Confidence 3445555544 4677788877777766432 11 222222222222 2245544444444322 122333334455
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHH
Q 038401 132 NVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAK 211 (542)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (542)
..+.+.+++......+.. .+.+...-.....+....|+.++|......+-..| ...+..++.++..+.+.|...
T Consensus 107 ~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 107 NELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCC
Confidence 566677777766652211 13466666777888888899887877776664444 335667777777777555432
Q ss_pred --HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhc---------CCCCcHHHHHHHHHHHH--ccC
Q 038401 212 --DADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRK---------EIEQNVVTYNTMIKIYG--KSL 278 (542)
Q Consensus 212 --~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~--~~~ 278 (542)
...+-+..+...| +...-..+...+. .+.....+.+..+... .++++...-..++.++. ...
T Consensus 181 ~~d~w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~ 255 (644)
T PRK11619 181 PLAYLERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQ 255 (644)
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHh
Confidence 3333334444333 2222333333221 1111111111111111 11122211111222222 234
Q ss_pred CHHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 038401 279 EHEKATNLMQEMQNRG-IEPNA--ITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKR 355 (542)
Q Consensus 279 ~~~~a~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (542)
+.+.|...+....... +.+.. ..+..+.......+....+...+....... .+......-++.-.+.++++.+..
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHH
Confidence 5577777777664432 22222 122333333333322445555555443321 234444444555557888888877
Q ss_pred HHHHhcCCC---CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH-HHHH-HHHHhCC
Q 038401 356 LLHELRQPN---TIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANV-IEVF-EKMRSAG 430 (542)
Q Consensus 356 ~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~-~~~~~~~ 430 (542)
.+..|.... ..-.--+..++...|+.++|...|+++... .+ .|..|... +.|..-.- .... .....
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~~~~~~~~~~~~~-- 404 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVAAQ--RLGEEYPLKIDKAPKPDSA-- 404 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHHHH--HcCCCCCCCCCCCCchhhh--
Confidence 777765321 111223456666678888888888887431 22 23332221 12221000 0000 00000
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhcCCCC--CchhHH
Q 038401 431 YFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDSDSNI--NKKELH 508 (542)
Q Consensus 431 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 508 (542)
+ +... ...-+..+...|+..+|...|..+.+.. ++.....++....+.|.++.++....+....... .-...|
T Consensus 405 ~-~~~~-~~~ra~~L~~~g~~~~a~~ew~~~~~~~---~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~ 479 (644)
T PRK11619 405 L-TQGP-EMARVRELMYWNMDNTARSEWANLVASR---SKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAW 479 (644)
T ss_pred h-ccCh-HHHHHHHHHHCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcch
Confidence 0 0001 1223445667899999999999888753 3333444777777889988888766543211000 001134
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHhcCCCCC
Q 038401 509 HVVAGIYERANRLNDASRIMNRMNKRRTFNS 539 (542)
Q Consensus 509 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 539 (542)
...+..+...-..+.++-+--..++.+..|+
T Consensus 480 ~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 480 NDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 4455555555566777666666666666664
No 352
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.02 E-value=13 Score=34.86 Aligned_cols=51 Identities=8% Similarity=0.087 Sum_probs=24.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH--hccCcHHHHHHHHHHHHH
Q 038401 412 RNKKYANVIEVFEKMRSAGYFPDSH--IIALVLNSY--GKLREFETADDLYSEMQE 463 (542)
Q Consensus 412 ~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 463 (542)
..+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455555555555555543 333322 222333333 344455555555555544
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.13 E-value=29 Score=30.57 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 038401 231 SYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQN-----RGIEPNAIT 301 (542)
Q Consensus 231 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~ 301 (542)
+++.....|..+|.+.+|.++.+.....+ +.+...+-.++..++..|+--.+.+-++.+.+ .|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 34555677888888888888888887765 55777788888888888887777777766543 365555443
No 354
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.48 E-value=42 Score=31.89 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=39.6
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHH
Q 038401 65 GKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEAR 144 (542)
Q Consensus 65 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 144 (542)
...|.++.+.+.+....+. +-....+...+++...+.|+++.|..+-+-|....+. ++.....-....-..|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 3455555555555444332 1223344455555555555666665555555544332 2222222222223344455555
Q ss_pred HHHHHHHH
Q 038401 145 LLIEEMRE 152 (542)
Q Consensus 145 ~~~~~~~~ 152 (542)
-.++++..
T Consensus 412 ~~wk~~~~ 419 (831)
T PRK15180 412 HYWKRVLL 419 (831)
T ss_pred HHHHHHhc
Confidence 55555443
No 355
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.24 E-value=14 Score=26.12 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=31.7
Q ss_pred HHHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhh
Q 038401 475 QMLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLND 523 (542)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 523 (542)
.++..+...|++++|.+.+-. +..+++.....+-..++.++...|.-+.
T Consensus 27 ~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 27 ALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 378888888888888877666 4555555556666777777777776543
No 356
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.99 E-value=33 Score=30.33 Aligned_cols=63 Identities=8% Similarity=0.108 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038401 261 EQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNR-GIEPNAITYSTIIAIWGKAGKLDRAAMLFQ 323 (542)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (542)
.++..+...++..++..+++.+-.++++..... +..-|...|..+|......|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 344445555555555555555555555554333 233345555555555555555544444443
No 357
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.64 E-value=7.2 Score=33.07 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh------CCCCCCHHH-----------HHHHHHHHhccCcHHHHHHHHHHHH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRS------AGYFPDSHI-----------IALVLNSYGKLREFETADDLYSEMQ 462 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~p~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~ 462 (542)
..+...-++-+.+.|++.+|..-|..++. ..-+|-..- +..+..++...|++-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455556667788888888888887642 112332222 2233345556677777777777777
Q ss_pred HcCCCCchHH--HHHHHHHHhccCChHHHHHHHHH-HhcCC
Q 038401 463 EEGCVFSDQV--HFQMLSLYGARKDFNMLESLFER-LDSDS 500 (542)
Q Consensus 463 ~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~-~~~~~ 500 (542)
+.. |..+ .+.-+.+....=+.++|..=|.+ +..+|
T Consensus 258 ~~~---~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 258 RHH---PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hcC---CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 765 3332 22255555556666677666666 34444
No 358
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.58 E-value=58 Score=32.93 Aligned_cols=470 Identities=13% Similarity=0.065 Sum_probs=202.6
Q ss_pred HHHHHHHHHhCCCCCCHHhH-HHHHHHHhccCCHHHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 038401 38 AHGLFDEMRQRGIAPDRYTY-STLITCFGKEGMFDSAISWLQQME-QDRVSGDLVLYSNLIELARKLSDYSKAISIFSRL 115 (542)
Q Consensus 38 A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 115 (542)
.+...+.+.+..-.|+..+- -.+-..|...|++++|+++--..- ...+.++...+..++.-|... -.+++.+.++.-
T Consensus 42 ~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~~ 120 (929)
T KOG2062|consen 42 SLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKNP 120 (929)
T ss_pred hHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcCc
Confidence 34444444444434443333 333457788899999887754432 223555666666655444321 112233333211
Q ss_pred H-hCCCCcc-HhHHHHHHHHHhccCcHHHHHH---------HHHHH-HHcCCCCCHHHHHHHHHHHHHCCC-hHHHHHHH
Q 038401 116 K-SSGIVPD-LVAYNTMINVFGKAKLFKEARL---------LIEEM-REQGVKPDTVSYSTLLNLYVENHK-FVEALSVF 182 (542)
Q Consensus 116 ~-~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~---------~~~~~-~~~g~~~~~~~~~~l~~~~~~~g~-~~~a~~~~ 182 (542)
. ..++.+. ......++..|...+++..++. ++++. .+.. .+....+.++..+....+ -+--.+++
T Consensus 121 ~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d--~~~~~~~yll~l~~s~v~~~efR~~vl 198 (929)
T KOG2062|consen 121 EQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSD--SVIGNLTYLLELLISLVNNREFRNKVL 198 (929)
T ss_pred cccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhcccc--ccchHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1 1112221 1223444444444444443332 23331 1111 122233334443333222 22233344
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhc---C
Q 038401 183 AEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRK---E 259 (542)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 259 (542)
+.+.+.=.+....-|..+..++....+.+.+.++++.+.+.. .....|..-...+....+ +--..+.+.+... +
T Consensus 199 r~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~--~~llayQIAFDL~esasQ-efL~~v~~~l~~d~~~d 275 (929)
T KOG2062|consen 199 RLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKED--DLLLAYQIAFDLYESASQ-EFLDSVLDRLPADDARD 275 (929)
T ss_pred HHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcc--hhhhHHHHHHHHhhccCH-HHHHHHHHHcccccccc
Confidence 443332111122235557788888999999999999988742 223334433333322211 1111122222211 1
Q ss_pred CCC---------cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHH-----HHHHH
Q 038401 260 IEQ---------NVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITY--STIIAIWGKAGKLDRA-----AMLFQ 323 (542)
Q Consensus 260 ~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a-----~~~~~ 323 (542)
-.| ...+....+..+.+.++.+- .+++..++. + -++.+. ..+.+++...|-...- +..+.
T Consensus 276 e~p~~kii~ILSGe~tik~~l~FL~~~N~tD~--~iL~~iK~s-~-r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~Wls 351 (929)
T KOG2062|consen 276 EKPMEKIISILSGEETIKLYLQFLLRHNNTDL--LILEEIKES-V-RNSVCHTATLIANAFMHAGTTSDTFLRNNLDWLS 351 (929)
T ss_pred cChHHHHHHHhcCchHHHHHHHHHHHcCCchH--HHHHHHHHH-H-HHhhhhHHHHHHHHHHhcCCcchHHHHhchhHHh
Confidence 111 11112222333334443331 223333222 1 112111 2233444444432211 11111
Q ss_pred HHHhcCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHhcCCC---CCCH----HHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 038401 324 KLRSSGVEIDPVLYQTMI-VAYERVGLVAHAKRLLHELRQPN---TIPR----ETAITILARAGRIEEATWVFRQAFDAG 395 (542)
Q Consensus 324 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (542)
+... +.. |++.. -+....|+..++.+++.-..... ...+ ..+.-++.++|......+++.+.++..
T Consensus 352 kAtN----WaK--FtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~ 425 (929)
T KOG2062|consen 352 KATN----WAK--FTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTA 425 (929)
T ss_pred hcch----Hhh--hhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhc
Confidence 1100 000 11100 11234677777888777654322 1112 123445667777777888888887754
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCcH-HHHHH-HHHHHHHcCCCCchH
Q 038401 396 EVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIA--LVLNSYGKLREF-ETADD-LYSEMQEEGCVFSDQ 471 (542)
Q Consensus 396 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~-~~A~~-~~~~~~~~~~~~~~~ 471 (542)
..+....=..|+-++...|.- -.++|+++.+.-...+..+-. .+..++...|-+ .+|++ .+.-+.+.. .+.
T Consensus 426 ~~e~v~hG~cLGlGLa~mGSa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQ---Hek 500 (929)
T KOG2062|consen 426 ENEVVRHGACLGLGLAGMGSA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQ---HEK 500 (929)
T ss_pred cchhhhhhhhhhccchhcccc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhh---HHH
Confidence 322222223344444444432 245666665532222322221 222233344432 33333 333333321 222
Q ss_pred HHHH--HHHHHhccCChHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhhcchhhHHHHH
Q 038401 472 VHFQ--MLSLYGARKDFNMLESLFERLDSDSNIN-KKELHHVVAGIYERANRLNDASRIM 528 (542)
Q Consensus 472 ~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 528 (542)
.... ++-++.--|.-++|..+++++..+.++- ....-+.++.+|+-.|+..--.+++
T Consensus 501 i~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lL 560 (929)
T KOG2062|consen 501 IIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLL 560 (929)
T ss_pred HHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhh
Confidence 2222 4556666777788999999975444311 1233456777787777755444444
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.42 E-value=28 Score=29.20 Aligned_cols=74 Identities=11% Similarity=0.168 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 038401 368 RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD----SHIIALVLN 443 (542)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 443 (542)
....++.+.+.+.+.+++...+.-++.. +.|...-..++..++-.|+|++|..-++-.-. +.|+ ..+|..+++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHHH
Confidence 3455677888899999999988888763 35666677788889999999999988877766 3343 356666665
Q ss_pred H
Q 038401 444 S 444 (542)
Q Consensus 444 ~ 444 (542)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 3
No 360
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.24 E-value=8.7 Score=27.36 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=10.6
Q ss_pred HHHHHHHhhcchhhHHHHHHHH
Q 038401 510 VVAGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 510 ~l~~~~~~~g~~~~A~~~~~~~ 531 (542)
.++.++...|++++|...+++.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 3444444455555555554443
No 361
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.79 E-value=64 Score=32.86 Aligned_cols=101 Identities=17% Similarity=0.092 Sum_probs=64.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 038401 27 RNVLRAKQWELAHGLFDEMRQRGIAP---DRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLS 103 (542)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (542)
+-+.+.+.+++|+.+-+.... ..| -...+..+|..+.-.|++++|-...-.|... +...|...+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 335677888998887665443 233 2456888889999999999999888888654 5556665555555554
Q ss_pred CHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhc
Q 038401 104 DYSKAISIFSRLKSSGIVPDLVAYNTMINVFGK 136 (542)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (542)
.... ++.-+.......++..|..++..+..
T Consensus 438 ~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 4332 22223222212356677777777766
No 362
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.98 E-value=68 Score=32.65 Aligned_cols=47 Identities=13% Similarity=0.297 Sum_probs=31.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccC
Q 038401 90 VLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAK 138 (542)
Q Consensus 90 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 138 (542)
.+|. ++-.|.+.|++++|.++.....+. .......+...+..|....
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 3453 566678999999999998655543 3555677788888887753
No 363
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.40 E-value=8.1 Score=32.71 Aligned_cols=115 Identities=10% Similarity=0.109 Sum_probs=81.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHH--HHHHHHhccCC
Q 038401 409 LFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHF--QMLSLYGARKD 485 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~ 485 (542)
.|....+++.|+..|.+.+. +.|+. .-|..=+.++.+..+|+.+..--.++++.. |+.+-- -++..+.....
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~---~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD---PNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC---hHHHHHHHHHHHHHHhhcc
Confidence 46667789999999988887 66877 445566678889999999999999998865 665543 38888899999
Q ss_pred hHHHHHHHHHH----hcCCCCCchhHHHHHHHHHHhhcchhhHHHHH
Q 038401 486 FNMLESLFERL----DSDSNINKKELHHVVAGIYERANRLNDASRIM 528 (542)
Q Consensus 486 ~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 528 (542)
+++|+..+.+. ...+......+...|.++-...=...++.+..
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~ 140 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIR 140 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHH
Confidence 99999999884 33344334567776666533322333444433
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.39 E-value=3.4 Score=21.29 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=10.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 038401 405 CMIELFSRNKKYANVIEVFEKMR 427 (542)
Q Consensus 405 ~l~~~~~~~g~~~~A~~~~~~~~ 427 (542)
.+...+...|++++|...+++.+
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444444444444443
No 365
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.06 E-value=5.2 Score=23.56 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=17.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhCC
Q 038401 25 VLRNVLRAKQWELAHGLFDEMRQRG 49 (542)
Q Consensus 25 ll~~~~~~~~~~~A~~~~~~~~~~~ 49 (542)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777776543
No 366
>PRK12798 chemotaxis protein; Reviewed
Probab=80.05 E-value=53 Score=30.81 Aligned_cols=227 Identities=9% Similarity=-0.067 Sum_probs=122.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHhcCC----CCCCHHHHHHH-H
Q 038401 303 STIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYE--RVGLVAHAKRLLHELRQP----NTIPRETAITI-L 375 (542)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~-~ 375 (542)
...+.-....|+++....++. .+..++. -..++.+.. -.|+..++.+.+..+... ....+-.++.+ .
T Consensus 85 ~Aa~iy~lSGGnP~vlr~L~~----~d~~~~~--d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l 158 (421)
T PRK12798 85 DAALIYLLSGGNPATLRKLLA----RDKLGNF--DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNL 158 (421)
T ss_pred hHHHhhHhcCCCHHHHHHHHH----cCCCChh--hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHH
Confidence 333333445677765544443 3322221 123333322 378999999999887642 22334444433 4
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhccC
Q 038401 376 ARAGRIEEATWVFRQAFDAGEVKDIS----VFGCMIELFSRNKKYANVIEVFEKMRSA-GYFPDS-HIIALVLNSYGKLR 449 (542)
Q Consensus 376 ~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~l~~~~~~~g 449 (542)
....+...|+++|+.+.=. .|-.. ....-+....+.|+.+++..+-.+-... ...|-. ..+..+..++.+.+
T Consensus 159 ~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~ 236 (421)
T PRK12798 159 MVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD 236 (421)
T ss_pred hcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc
Confidence 5567899999999988653 34322 3333444567889988877766655432 223322 22333333444443
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHhcC--C-CCCch--hHHHHHHHHHHhhcchhh
Q 038401 450 EFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLDSD--S-NINKK--ELHHVVAGIYERANRLND 523 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~--~~~~~l~~~~~~~g~~~~ 523 (542)
+-..- .-+..++..-........|. ++..-.-.|+.+-|.-.-++...- . +.... ..|...+. ......++
T Consensus 237 d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~--v~s~~~~~ 313 (421)
T PRK12798 237 DEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAAL--VASDDAES 313 (421)
T ss_pred ccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHc--cCcccHHH
Confidence 22222 22445544321222334555 777777899999998888874322 1 21111 22322222 23456888
Q ss_pred HHHHHHHHHhcCCCCCC
Q 038401 524 ASRIMNRMNKRRTFNSS 540 (542)
Q Consensus 524 A~~~~~~~~~~~~~~~~ 540 (542)
|.+.++.+....+.+.+
T Consensus 314 al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 314 ALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHHHhcCChhhCChhh
Confidence 88888888777766644
No 367
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.02 E-value=35 Score=28.70 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CcCHHHHHHHHHH
Q 038401 338 QTMIVAYERVGLVAHAKRLLHELRQ---PNTIPRETAITILARAGRIEEATWVFRQAFDAGE--VKDISVFGCMIEL 409 (542)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~ 409 (542)
+..+..+.+.+..++++...++-.+ .+......++..++-.|++++|..-++-+-+... .+-...|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566677788888887766543 2344556678888888888888877776655321 1224455555543
No 368
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.97 E-value=0.49 Score=37.17 Aligned_cols=53 Identities=9% Similarity=0.111 Sum_probs=24.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHH
Q 038401 26 LRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQ 78 (542)
Q Consensus 26 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 78 (542)
++.+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444444555555555555544433344555555555555544444444443
No 369
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.92 E-value=59 Score=31.31 Aligned_cols=165 Identities=18% Similarity=0.217 Sum_probs=102.3
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 038401 191 PLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTM 270 (542)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 270 (542)
+.|.....+++..+.......-.+.+..+|...| .+...+..++.+|... ..+.-..+++.+.+..+. |...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4566667778888888888888888888888775 4566778888888777 556677777777776432 33333444
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 038401 271 IKIYGKSLEHEKATNLMQEMQNRGIEP-----NAITYSTIIAIWGKAGKLDRAAMLFQKLRSS-GVEIDPVLYQTMIVAY 344 (542)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 344 (542)
...|-+ ++.+++..+|.++..+-++- -...|..+... -..+.+..+.+..++... |...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 77778888887776542210 11244444432 134566666666666543 2222334444455566
Q ss_pred HHcCCHHHHHHHHHHhcC
Q 038401 345 ERVGLVAHAKRLLHELRQ 362 (542)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~ 362 (542)
....++++|++++..+.+
T Consensus 216 s~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 216 SENENWTEAIRILKHILE 233 (711)
T ss_pred ccccCHHHHHHHHHHHhh
Confidence 677778888877776654
No 370
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.88 E-value=1.3e+02 Score=35.32 Aligned_cols=51 Identities=8% Similarity=-0.053 Sum_probs=24.5
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 038401 204 YGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLM 255 (542)
Q Consensus 204 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 255 (542)
....|++..|...|+.+.+.+ ++...+++-++......|.++......+..
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch
Confidence 344455555555555555543 222444444444444455555544444333
No 371
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=79.73 E-value=20 Score=27.32 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=30.0
Q ss_pred HHHHHHHHHhc-CCCCCchhHHHHHHHHHHhhcchhhHHHHHHH
Q 038401 488 MLESLFERLDS-DSNINKKELHHVVAGIYERANRLNDASRIMNR 530 (542)
Q Consensus 488 ~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 530 (542)
.+.++|+.|.. .-+...+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777543 34445567788888888888888888887765
No 372
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.62 E-value=86 Score=33.01 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHh
Q 038401 161 SYSTLLNLYVENHKFVEALSVFAEMNE 187 (542)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (542)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 367788888888888888888888766
No 373
>PRK09687 putative lyase; Provisional
Probab=79.42 E-value=46 Score=29.74 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=33.6
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH----HHHHHHHHHhHhCCCCccHhHHH
Q 038401 53 DRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDY----SKAISIFSRLKSSGIVPDLVAYN 128 (542)
Q Consensus 53 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 128 (542)
+.......+.++...|. ..+...+..+.. .+|...-...+.++...|+. .++...+..+... .++..+-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 45555555555555553 222233333332 22444444455555555542 2344444444222 33444444
Q ss_pred HHHHHHhc
Q 038401 129 TMINVFGK 136 (542)
Q Consensus 129 ~l~~~~~~ 136 (542)
..+.+++.
T Consensus 110 ~A~~aLG~ 117 (280)
T PRK09687 110 SAINATGH 117 (280)
T ss_pred HHHHHHhc
Confidence 44444433
No 374
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.25 E-value=0.86 Score=35.76 Aligned_cols=83 Identities=13% Similarity=0.197 Sum_probs=43.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCC
Q 038401 130 MINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDM 209 (542)
Q Consensus 130 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (542)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34455555666666666666665544445666666666666666656666555511 11222334455555555
Q ss_pred HHHHHHHHHH
Q 038401 210 AKDADRLFWS 219 (542)
Q Consensus 210 ~~~a~~~~~~ 219 (542)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 375
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.85 E-value=19 Score=35.05 Aligned_cols=115 Identities=10% Similarity=0.083 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCCCCCHHHH--HHHH-HHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038401 350 VAHAKRLLHELRQPNTIPRETA--ITIL-ARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKM 426 (542)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~l--~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 426 (542)
.+-+..++..|..++...|-.+ ...| ...|+...|...+..+....+...-+..-.|.....+.|-..+|..++.+.
T Consensus 589 ~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 3445556666666555544433 2223 345888888888887765433223334455666677777888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 427 RSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 427 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
+... ...+-++..+++++....+.+.|++.|+.+.+..
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 7643 2344566778888888888889999988888876
No 376
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.56 E-value=44 Score=29.03 Aligned_cols=205 Identities=14% Similarity=0.132 Sum_probs=124.4
Q ss_pred CCCCcHHHHHHHHHH-HHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC-
Q 038401 259 EIEQNVVTYNTMIKI-YGKSLEHEKATNLMQEMQNRGIEPN---AITYSTIIAIWGKAGKLDRAAMLFQKLRSS---GV- 330 (542)
Q Consensus 259 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 330 (542)
+..||+..=|..-.+ -.+..++++|+.-|.+..+..-.-. ......++....+.+++++....|.+++.. .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345665544333221 1244578999999999876522222 334556778888999999999999887531 11
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC-----CCCCCH----HHHHHHHHHhCCHHHHHHHHHHHHHcCCC---
Q 038401 331 -EIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ-----PNTIPR----ETAITILARAGRIEEATWVFRQAFDAGEV--- 397 (542)
Q Consensus 331 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 397 (542)
.-+....+++++......+.+--..+++.-.. .+...| ..+...+...|.+..-.++++++-+....
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 22455667777766666665555555543221 222222 34667777778888887777777654211
Q ss_pred -cC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----hccCcHHHHHHHHHHHHH
Q 038401 398 -KD-------ISVFGCMIELFSRNKKYANVIEVFEKMRSA-GYFPDSHIIALVLNSY-----GKLREFETADDLYSEMQE 463 (542)
Q Consensus 398 -~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~ 463 (542)
.| ...|..-+..|..+.+-..-..+|++.+.- ..-|.+.+. .+++-| .+.|++++|..-|-++.+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 11 335666667777788878888888877642 233554443 344444 466888888776666665
Q ss_pred c
Q 038401 464 E 464 (542)
Q Consensus 464 ~ 464 (542)
.
T Consensus 260 N 260 (440)
T KOG1464|consen 260 N 260 (440)
T ss_pred c
Confidence 4
No 377
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.42 E-value=28 Score=26.66 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=48.8
Q ss_pred CcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 397 VKDISVFGCMIELFSRNK---KYANVIEVFEKMRSAGYFPDS--HIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 397 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.++..+--.+.+++.+.. +.++.+.+++.+.+. -.|+. ...-.+.-++.+.+++++++++.+.+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 456666667778887654 466778888888862 23432 344456668889999999999999998865
No 378
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.34 E-value=47 Score=30.87 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=31.0
Q ss_pred HHHHHhccCChHHHHHHHHHHhc--CCCC-CchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 476 MLSLYGARKDFNMLESLFERLDS--DSNI-NKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
++..|...+.++.|..++.+..- .... .-.-..+.++.+-.-++.|..|.+++-.+..+.
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 44555566666666666666321 1110 011233445555566666666666666655544
No 379
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.52 E-value=7.5 Score=37.54 Aligned_cols=85 Identities=14% Similarity=0.083 Sum_probs=44.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHH-HHHHHHhccCChHH
Q 038401 412 RNKKYANVIEVFEKMRSAGYFP--DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHF-QMLSLYGARKDFNM 488 (542)
Q Consensus 412 ~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~ 488 (542)
..|+...|...+..+.. ..| .......+.....+.|..-+|-.++.+.+... ...+.++ .++..+....+++.
T Consensus 619 ~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHH
Confidence 34666666666655554 223 11333344555555556666666666665554 1222222 26666666666666
Q ss_pred HHHHHHH-HhcCC
Q 038401 489 LESLFER-LDSDS 500 (542)
Q Consensus 489 A~~~~~~-~~~~~ 500 (542)
|++.|+. |..++
T Consensus 695 a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 695 ALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHhcCC
Confidence 6666666 44443
No 380
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=76.86 E-value=95 Score=31.99 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 300 ITYSTIIAIWGKAGKLDRAAMLFQKLRS 327 (542)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (542)
..|..++.-+.+.|++-....+++++..
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4455666666666766666666665543
No 381
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.35 E-value=1.7e+02 Score=34.58 Aligned_cols=55 Identities=5% Similarity=-0.023 Sum_probs=28.4
Q ss_pred HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 476 MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
.+.+...+|.++.|...+-...... ..+++...+..+...|+-..|+.++++-..
T Consensus 1676 sAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1676 SARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5555555666666554444432211 234555555555666666666666555443
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.91 E-value=56 Score=28.90 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 038401 245 FGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQ 288 (542)
Q Consensus 245 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (542)
..+|.++|.-+..+. .-..+-..++.++-...+..+|...+.
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHH
Confidence 356777777666552 122333445555555555555555443
No 383
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.84 E-value=8.8 Score=27.14 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHh
Q 038401 450 EFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLD 497 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (542)
+.+.-.+.++++...+...|...+..++-+|...|+.+.|.+-|+.=+
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 445556677777777766666666668888888888888888888743
No 384
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=75.75 E-value=21 Score=26.50 Aligned_cols=19 Identities=21% Similarity=0.122 Sum_probs=9.7
Q ss_pred HHHHHhhcchhhHHHHHHH
Q 038401 512 AGIYERANRLNDASRIMNR 530 (542)
Q Consensus 512 ~~~~~~~g~~~~A~~~~~~ 530 (542)
+-.+...|+.++|+..|++
T Consensus 107 a~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHH
Confidence 3344555566666655554
No 385
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.52 E-value=4 Score=38.26 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=60.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHHcCCCCchHH-HHH-HHHHHhcc
Q 038401 407 IELFSRNKKYANVIEVFEKMRSAGYFPDSHIIA-LVLNSYGKLREFETADDLYSEMQEEGCVFSDQV-HFQ-MLSLYGAR 483 (542)
Q Consensus 407 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~-l~~~~~~~ 483 (542)
+..+...+.++.|+.++.++++ ..||...|- .=..++.+.+++..|+.-+.++++.. |... .|. -+.++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhhheeeeccHHHHhH
Confidence 4455667888888888888888 557654433 33367788888888888888888865 4332 333 56677777
Q ss_pred CChHHHHHHHHHHh
Q 038401 484 KDFNMLESLFERLD 497 (542)
Q Consensus 484 g~~~~A~~~~~~~~ 497 (542)
+.+.+|...|++..
T Consensus 86 ~~~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 86 GEFKKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888888843
No 386
>PRK10941 hypothetical protein; Provisional
Probab=75.48 E-value=41 Score=29.78 Aligned_cols=54 Identities=9% Similarity=-0.055 Sum_probs=29.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH
Q 038401 440 LVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 495 (542)
.+-.+|.+.++++.|+.+.+.++... |.++..+. -+-+|.+.|.+..|..=++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~ 240 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSY 240 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34445556666666666666666654 12222222 55556666666666655555
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.18 E-value=46 Score=29.22 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=45.1
Q ss_pred HHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH-----H
Q 038401 166 LNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVY-----G 240 (542)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-----~ 240 (542)
|.+++..++|.+++...-+.-+..-+........-|-.|.+.+++..+.++-..-....-.-+..-|..++..| .
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 55666666666666655444333222233344444555666677666666655555432122233355554444 3
Q ss_pred hcCcHHHHHHHH
Q 038401 241 EAELFGEAIHLF 252 (542)
Q Consensus 241 ~~~~~~~a~~~~ 252 (542)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666655
No 388
>PRK10941 hypothetical protein; Provisional
Probab=74.75 E-value=54 Score=29.03 Aligned_cols=66 Identities=14% Similarity=-0.019 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCch
Q 038401 403 FGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSD 470 (542)
Q Consensus 403 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 470 (542)
.+.+-.+|.+.++++.|+.+.+.++. +.|+. .-+.--+-.|.+.|.+..|..-++..++..+..|+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 44555677888888888888888887 44643 44444555678888888888888888887643343
No 389
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.70 E-value=17 Score=25.69 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCCC
Q 038401 492 LFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRTF 537 (542)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 537 (542)
+-..+..+|+ +...-+.++..+...|++++|++.+-.+.+....
T Consensus 11 l~~~~a~~P~--D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 11 LEAALAANPD--DLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3334666666 5678889999999999999999999998887643
No 390
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=74.66 E-value=27 Score=26.55 Aligned_cols=43 Identities=7% Similarity=0.264 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH
Q 038401 453 TADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 453 ~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 495 (542)
++.++|+.|...+.-......|. .+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777776664444444444 66667777777777776654
No 391
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.14 E-value=1.1e+02 Score=31.36 Aligned_cols=102 Identities=11% Similarity=0.064 Sum_probs=59.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCc---cHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Q 038401 96 IELARKLSDYSKAISIFSRLKSSGIVP---DLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVEN 172 (542)
Q Consensus 96 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 172 (542)
+..+.+.+.+++|....+..... .| ........|..+...|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45556667777777776655432 33 2445667777778888888888877777654 556666666666665
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhc
Q 038401 173 HKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQ 206 (542)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 206 (542)
++......+ +.......++..|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554433222 1211112344555555555544
No 392
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.06 E-value=72 Score=29.26 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhc---cCcHHHHHHHH
Q 038401 71 DSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGK---AKLFKEARLLI 147 (542)
Q Consensus 71 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 147 (542)
+.-+.++++.++.++ .+......++..+.+..+.+...+.|+++.... +-+...|...+..... .-.+.....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 444567777766643 466677777777777777777777888877653 3356666666655433 22345555555
Q ss_pred HHH
Q 038401 148 EEM 150 (542)
Q Consensus 148 ~~~ 150 (542)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 443
No 393
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=73.88 E-value=1e+02 Score=31.03 Aligned_cols=25 Identities=4% Similarity=0.037 Sum_probs=16.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 038401 89 LVLYSNLIELARKLSDYSKAISIFSR 114 (542)
Q Consensus 89 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 114 (542)
+..|. .+..+.-.|.++.|.+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 56666 56667777888888888744
No 394
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.47 E-value=3.6 Score=36.71 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=55.5
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHH
Q 038401 377 RAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFETAD 455 (542)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~ 455 (542)
..|.++.|++.|...++.. ++....|..-..++.+.+++..|+.-+..... +.||. .-|..=..+....|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 3466777777777777653 34455555556667777777777777777766 44554 23333334555677788888
Q ss_pred HHHHHHHHcC
Q 038401 456 DLYSEMQEEG 465 (542)
Q Consensus 456 ~~~~~~~~~~ 465 (542)
..+..+.+.+
T Consensus 203 ~dl~~a~kld 212 (377)
T KOG1308|consen 203 HDLALACKLD 212 (377)
T ss_pred HHHHHHHhcc
Confidence 7777777766
No 395
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.01 E-value=9.7 Score=23.57 Aligned_cols=28 Identities=4% Similarity=0.082 Sum_probs=18.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHH-hcCCC
Q 038401 474 FQMLSLYGARKDFNMLESLFERL-DSDSN 501 (542)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 501 (542)
|.++-++.+.|++++|.+.++.+ ..+|+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 34677778888888888888884 44443
No 396
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=72.72 E-value=48 Score=28.12 Aligned_cols=117 Identities=10% Similarity=0.014 Sum_probs=66.7
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH--HHHHHHHhccCcHHHHHHHHHHHHHcCCCCch
Q 038401 396 EVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP---DSHII--ALVLNSYGKLREFETADDLYSEMQEEGCVFSD 470 (542)
Q Consensus 396 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 470 (542)
..+...-+|.|+--|.-+..+.+|.+.|..-. |+.| +..++ ..-++.....|+.++|.+....+.-.-.....
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 34555667777777777777777776665433 3444 33333 24556667888888888888776543211222
Q ss_pred HHHHHHH----HHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038401 471 QVHFQML----SLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGI 514 (542)
Q Consensus 471 ~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 514 (542)
...+.+. -=+.+.|..++|+++++.-....+..+...+..+=++
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~ 147 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERT 147 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHH
Confidence 2233321 1245688888888888874333333333444444443
No 397
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=72.04 E-value=29 Score=24.67 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=13.4
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc
Q 038401 441 VLNSYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~~~~~ 464 (542)
+.......|++++|...++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334445556666666666665543
No 398
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.90 E-value=39 Score=25.43 Aligned_cols=48 Identities=15% Similarity=0.319 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 418 NVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 418 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
+..+.++.+...++.|++......+++|.+.+++..|.++++-+..+-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 344555666666777888888888888888888888888888777654
No 399
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.37 E-value=2.9 Score=37.24 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=81.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHhccCChH
Q 038401 410 FSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ--MLSLYGARKDFN 487 (542)
Q Consensus 410 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~ 487 (542)
....|.+++|++.|...+..+ +|....|..=..++.+.+++..|++-+..+.+.+ |+..--. -..+....|+++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein---~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN---PDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC---cccccccchhhHHHHHhhchH
Confidence 446788999999999988843 2344566666778889999999999999999876 4443322 455666689999
Q ss_pred HHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 488 MLESLFERL-DSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 488 ~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
+|...+... +.+.+. ..-..+-.+.-+++..++=...+++.++..-
T Consensus 200 ~aa~dl~~a~kld~dE---~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~ 246 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDE---ANSATLKEVFPNAGKIEEHRRKYERAREERE 246 (377)
T ss_pred HHHHHHHHHHhccccH---HHHHHHHHhccchhhhhhchhHHHHHHHHhc
Confidence 999999885 433332 2333344555666666666666666655443
No 400
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.26 E-value=1.4e+02 Score=31.26 Aligned_cols=229 Identities=13% Similarity=0.056 Sum_probs=123.1
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCC----H---HHHHHHH-HHHHHCCChHHHHHHHHHHHhc----CCCCChhhHHHH
Q 038401 133 VFGKAKLFKEARLLIEEMREQGVKPD----T---VSYSTLL-NLYVENHKFVEALSVFAEMNEV----NCPLDLTTCNIM 200 (542)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~g~~~~----~---~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l 200 (542)
......++++|..++.++...=..|+ . ..+..+- ......|++++|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 34557889999999988765422222 1 1233332 2334578889999888777553 122345556667
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHH-----HHHHhcCcHH--HHHHHHHHHHhc---CCC---CcHHHH
Q 038401 201 IDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLL-----RVYGEAELFG--EAIHLFRLMQRK---EIE---QNVVTY 267 (542)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~--~a~~~~~~~~~~---~~~---~~~~~~ 267 (542)
..+..-.|++++|..+.....+..-..+...+..+. ..+..+|+.. +....+...... ..+ +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 777788899999998887776543233444333322 2344566432 223333333222 111 123344
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCHHHHHHH
Q 038401 268 NTMIKIYGKS-LEHEKATNLMQEMQNRGIEPNAIT--YSTIIAIWGKAGKLDRAAMLFQKLRSSGV----EIDPVLYQTM 340 (542)
Q Consensus 268 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l 340 (542)
..++.++.+. +...++..-+.-.......|-... +..++......|+.++|...++++..... .++.......
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 5555555551 112222222222222222222222 23567778889999999998888765322 2222222222
Q ss_pred HH--HHHHcCCHHHHHHHHHHhc
Q 038401 341 IV--AYERVGLVAHAKRLLHELR 361 (542)
Q Consensus 341 ~~--~~~~~~~~~~a~~~~~~~~ 361 (542)
+. .....|+...+...+.+-.
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhcc
Confidence 22 3456888888887777643
No 401
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.21 E-value=16 Score=22.60 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=9.7
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 038401 409 LFSRNKKYANVIEVFEKMRS 428 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~ 428 (542)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34455555555555555554
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.69 E-value=39 Score=25.46 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 038401 75 SWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKS 117 (542)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 117 (542)
+.+..+...++.|++..-...+++|.+.+|+..|.++|+-++.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444445556666666666666666666666666666554
No 403
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.29 E-value=19 Score=25.58 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=13.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc
Q 038401 441 VLNSYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~~~~~ 464 (542)
+.-.|.+.|+.+.|.+-|+.-...
T Consensus 78 LGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 78 LGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhh
Confidence 444555666666666655554443
No 404
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.33 E-value=35 Score=23.73 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=17.7
Q ss_pred HcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHH
Q 038401 346 RVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIE 382 (542)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 382 (542)
..|+.+.|.+++..+. .++..+...++++...|.-.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 3455555555555555 44444444555554444433
No 405
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=68.61 E-value=73 Score=27.07 Aligned_cols=74 Identities=23% Similarity=0.273 Sum_probs=44.8
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCC---CHHhHH--HHHHHHhccCCHHHHHHHHHHHH
Q 038401 7 DWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAP---DRYTYS--TLITCFGKEGMFDSAISWLQQME 81 (542)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~ 81 (542)
+|-.+-..+++....+|.|+--|.-...+.+|.+.|.. +.|+.| +..+++ .-|......|+.+.|++....+.
T Consensus 14 ~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 14 EWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred hhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 44444555677777777777777666666667666643 233333 333322 34555667788888877777664
Q ss_pred h
Q 038401 82 Q 82 (542)
Q Consensus 82 ~ 82 (542)
.
T Consensus 92 P 92 (228)
T KOG2659|consen 92 P 92 (228)
T ss_pred h
Confidence 3
No 406
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.42 E-value=41 Score=24.14 Aligned_cols=83 Identities=25% Similarity=0.297 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHH--HHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 038401 35 WELAHGLFDEMRQRGIAPDRYTYSTLI--TCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIF 112 (542)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 112 (542)
.++|..+-+-+...+ +..-...+| ..+...|++++|..+.+.+ +.||...|..|.. .+.|-.+.+..-+
T Consensus 21 HqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 21 HQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 455555555554432 112222222 3455667777776665554 3566666655543 3455555566666
Q ss_pred HHhHhCCCCccHhHH
Q 038401 113 SRLKSSGIVPDLVAY 127 (542)
Q Consensus 113 ~~~~~~~~~~~~~~~ 127 (542)
.++..+| .|....|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 6666655 4444433
No 407
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=67.37 E-value=25 Score=21.19 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=20.1
Q ss_pred HHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038401 29 VLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLIT 62 (542)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 62 (542)
..+.|-..++..+++.|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455566666666666666666666655555543
No 408
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.33 E-value=44 Score=24.02 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=31.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 409 LFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.+...|+|++|..+.+.. ..||...|..+ +-.+.|..+++...+.++...+
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCC
Confidence 455667777777666544 24666666544 3356677776666666666665
No 409
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=66.99 E-value=81 Score=26.99 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=54.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHhCCHHHHHHH
Q 038401 309 WGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ-PNTIPRETAITILARAGRIEEATWV 387 (542)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 387 (542)
|.+..+.+--.++.+-....+++-+..-..+++ +...|+..+|+..++.-.. .+... +..+
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn----------------~enV 230 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVN----------------QENV 230 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccc----------------hhhh
Confidence 334444433334444444444444444444433 4457777777766665332 11111 1112
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038401 388 FRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD 434 (542)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 434 (542)
|+-. ..|.+.....++..| ..+++++|.+++.++.+.|+.|.
T Consensus 231 fKv~----d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 231 FKVC----DEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred hhcc----CCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 2211 346666666666655 34678888888888888887764
No 410
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.48 E-value=71 Score=26.11 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=14.6
Q ss_pred HHHhccCChHHHHHHHHHHhcCCC
Q 038401 478 SLYGARKDFNMLESLFERLDSDSN 501 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~ 501 (542)
.+|.+.|.+++|.++++++..+++
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~ 142 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPE 142 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCC
Confidence 456666666666666666554444
No 411
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.94 E-value=95 Score=27.41 Aligned_cols=156 Identities=15% Similarity=0.213 Sum_probs=78.8
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CC-CHHHHHHHHH
Q 038401 375 LARAGRIEEATWVFRQAFDAGEVKDIS-------VFGCMIELFSRNKKYANVIEVFEKMRSA--GY-FP-DSHIIALVLN 443 (542)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~p-~~~~~~~l~~ 443 (542)
..+.+++++|+..+.+++..|...+.. +...+...|...|++..--+......+. ++ .| .......++.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 445566666666666666666554432 3444566666666665544433322210 01 12 2234445555
Q ss_pred HHhcc-CcHHHHHHHHHHHHHcC----CCCchHHHHH-HHHHHhccCChHHHHHHHHHH----hcC-CCCCchhHHHHHH
Q 038401 444 SYGKL-REFETADDLYSEMQEEG----CVFSDQVHFQ-MLSLYGARKDFNMLESLFERL----DSD-SNINKKELHHVVA 512 (542)
Q Consensus 444 ~~~~~-g~~~~A~~~~~~~~~~~----~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~----~~~-~~~~~~~~~~~l~ 512 (542)
.+... ...+.-+.+....++-. ...-....-. ++.++.+.|++.+|..+++.+ ++- ....-.+.+..-.
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllES 172 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLES 172 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhH
Confidence 44332 23444444444443321 0001111122 678888999999999887764 211 1111234555556
Q ss_pred HHHHhhcchhhHHHHHHH
Q 038401 513 GIYERANRLNDASRIMNR 530 (542)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~ 530 (542)
.+|..-.+..++..-+-.
T Consensus 173 Kvyh~irnv~KskaSLTa 190 (421)
T COG5159 173 KVYHEIRNVSKSKASLTA 190 (421)
T ss_pred HHHHHHHhhhhhhhHHHH
Confidence 677666666665554444
No 412
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.93 E-value=96 Score=27.45 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 038401 402 VFGCMIELFSRNKKYANVIEVFE 424 (542)
Q Consensus 402 ~~~~l~~~~~~~g~~~~A~~~~~ 424 (542)
.+..+.+-|++.++.+.+.+...
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Confidence 34444444444444444444433
No 413
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=65.88 E-value=16 Score=19.70 Aligned_cols=25 Identities=8% Similarity=0.219 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038401 415 KYANVIEVFEKMRSAGYFPDSHIIALV 441 (542)
Q Consensus 415 ~~~~A~~~~~~~~~~~~~p~~~~~~~l 441 (542)
.++.|..+|++.+. +.|+..+|...
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 35666677777666 44666666543
No 414
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=65.71 E-value=15 Score=20.76 Aligned_cols=28 Identities=7% Similarity=0.103 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 506 ELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
..|..|+++-...+++++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678899999999999999988888554
No 415
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.69 E-value=1.6e+02 Score=29.81 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHH
Q 038401 19 VFAYNVVLRNVLRAKQWELAHGLFD 43 (542)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~A~~~~~ 43 (542)
+..|+ .+..+.-.|.++.|.+++.
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHH
Confidence 55665 5666666677777777763
No 416
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=65.54 E-value=15 Score=20.53 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhcchhhHHHHHH
Q 038401 507 LHHVVAGIYERANRLNDASRIMN 529 (542)
Q Consensus 507 ~~~~l~~~~~~~g~~~~A~~~~~ 529 (542)
.+..++-.+...|++++|+.+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677888889999999999954
No 417
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.34 E-value=1.3e+02 Score=28.77 Aligned_cols=143 Identities=14% Similarity=0.016 Sum_probs=62.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhc
Q 038401 27 RNVLRAKQWELAHGLFDEMRQRGIAPDRYT--YSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLV--LYSNLIELARKL 102 (542)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 102 (542)
...++.|+.+-+..+ .+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 334455666554444 44566555432 223344445566654 334444555444322 112234455567
Q ss_pred CCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCChHHHHH
Q 038401 103 SDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVS--YSTLLNLYVENHKFVEALS 180 (542)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~a~~ 180 (542)
|+.+.+..+++.-.......+..-. +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+.-
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 7777665555432110000011111 223333445554 34444555555443221 1123344455666554433
Q ss_pred HH
Q 038401 181 VF 182 (542)
Q Consensus 181 ~~ 182 (542)
++
T Consensus 154 Ll 155 (413)
T PHA02875 154 LI 155 (413)
T ss_pred HH
Confidence 33
No 418
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.22 E-value=14 Score=23.73 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=6.4
Q ss_pred HHHhccCcHHHHHHHHHH
Q 038401 443 NSYGKLREFETADDLYSE 460 (542)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~ 460 (542)
.+|.+.|++++|.++++.
T Consensus 31 ~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 31 YGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 333333333333333333
No 419
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.66 E-value=1e+02 Score=29.56 Aligned_cols=9 Identities=11% Similarity=0.353 Sum_probs=3.8
Q ss_pred HHHcCCCCC
Q 038401 290 MQNRGIEPN 298 (542)
Q Consensus 290 ~~~~~~~p~ 298 (542)
+.+.|..|+
T Consensus 187 Ll~~ga~~n 195 (413)
T PHA02875 187 LLDSGANID 195 (413)
T ss_pred HHhCCCCCC
Confidence 344444443
No 420
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.59 E-value=67 Score=25.15 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=14.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHH
Q 038401 56 TYSTLITCFGKEGMFDSAISWLQQM 80 (542)
Q Consensus 56 ~~~~l~~~~~~~g~~~~a~~~~~~~ 80 (542)
..+.++......+++...+.+++.+
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHH
Confidence 3455555555666666666666555
No 421
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.29 E-value=1.5e+02 Score=29.21 Aligned_cols=155 Identities=13% Similarity=0.102 Sum_probs=90.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhc
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFS-RNKKYANVIEVFEKMRSA---GYFPDSHIIALVLNSYGK 447 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~ 447 (542)
+..+.+.|.+..|.++.+.+....+..|+.....+|+.|+ +..+|+=.+++++..... ..-||-..-..++..|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4456778999999999999998876668888888888775 667788778877776432 244665444455555655
Q ss_pred cCc---HHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHh-cCCCCCchhHHHHHHHHHHhhcc---
Q 038401 448 LRE---FETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLD-SDSNINKKELHHVVAGIYERANR--- 520 (542)
Q Consensus 448 ~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~--- 520 (542)
... -+.|...+.++.... |.. +..++-...--+.|..-.-++. ..-..+...++..++.+|.....
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~---P~v----l~eLld~~~l~~da~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~~vW 501 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHH---PLV----LSELLDELLLGDDALTKDLKFDGSSAENSELPALMLLVKLYANRNEEVW 501 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhC---cHH----HHHHHHhccCCchhhhhhhcccccccccccchHHHHHHHHHHhhhhHhh
Confidence 444 567888888887764 321 1122222222222322222211 11111123567777777765442
Q ss_pred -hhhHHHHHHHHHh
Q 038401 521 -LNDASRIMNRMNK 533 (542)
Q Consensus 521 -~~~A~~~~~~~~~ 533 (542)
..++..++.....
T Consensus 502 k~P~~ls~l~~~~~ 515 (665)
T KOG2422|consen 502 KLPDVLSFLESAYH 515 (665)
T ss_pred cChHHHHHHHHHHH
Confidence 3456666666555
No 422
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.03 E-value=50 Score=27.48 Aligned_cols=43 Identities=16% Similarity=0.096 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 421 EVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
+..++..+ ..|+..++..++.++...|+.++|.+..+++....
T Consensus 132 ~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 132 EWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33344444 56888888888888888888888888888888766
No 423
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.41 E-value=1.3e+02 Score=28.13 Aligned_cols=153 Identities=15% Similarity=0.122 Sum_probs=89.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHH
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFS-RNKKYANVIEVFEKMRSA------GYFPDSHIIALVLNS 444 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~ 444 (542)
+..+.+.|.+..|+++.+-+...++..|+.....+|+.|+ +.++++--+++++..... ..-|+ ..|...+ +
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aL-A 187 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIAL-A 187 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHH-H
Confidence 5667888999999999999999877667877777777765 678888788888776541 11233 2333333 4
Q ss_pred HhccCcH---------------HHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHh--cCCCCCchhH
Q 038401 445 YGKLREF---------------ETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLD--SDSNINKKEL 507 (542)
Q Consensus 445 ~~~~g~~---------------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 507 (542)
+...++. ++|...+.+++... |..... +...+ .-..+.+........ ......+...
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f---P~vl~~-Ll~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILRF---PWVLVP-LLDKL--GISPDSSVSNHPHFSPSSWSSEPPSDS 261 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHHh---HHHHHH-HHHHh--ccccchhhhcCCCCcccccccCCchhH
Confidence 4445555 88999999988865 432222 33322 111222222111000 0111112345
Q ss_pred HHHHHHHHHhhc--ch--hhHHHHHHHHH
Q 038401 508 HHVVAGIYERAN--RL--NDASRIMNRMN 532 (542)
Q Consensus 508 ~~~l~~~~~~~g--~~--~~A~~~~~~~~ 532 (542)
...++.+|.... -| .++...++...
T Consensus 262 ~~ll~~lYv~R~~~LWk~~~~l~wL~~~~ 290 (360)
T PF04910_consen 262 LKLLTELYVERSKDLWKEPEVLSWLEDNA 290 (360)
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHH
Confidence 667777775543 13 56777777654
No 424
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.18 E-value=19 Score=33.99 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=71.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccC
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEVKD-ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLR 449 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 449 (542)
+......+.++.|..++.++++. .|+ ...|..-..++.+.+++..|+.-+.++++. .|+. ..|..=+.++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 45566778999999999999996 454 444555557888999999999998888884 3643 34444455677788
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHH
Q 038401 450 EFETADDLYSEMQEEGCVFSDQVHFQ 475 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~~~~~~~~~~~ 475 (542)
++.+|...|+...... |+.....
T Consensus 87 ~~~~A~~~l~~~~~l~---Pnd~~~~ 109 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLA---PNDPDAT 109 (476)
T ss_pred HHHHHHHHHHHhhhcC---cCcHHHH
Confidence 8889999998888765 5555444
No 425
>PF13934 ELYS: Nuclear pore complex assembly
Probab=63.17 E-value=98 Score=26.60 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHh
Q 038401 95 LIELARKLSDYSKAISIFSRL 115 (542)
Q Consensus 95 l~~~~~~~~~~~~a~~~~~~~ 115 (542)
++.++...|+.+.|..+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444455555555555443
No 426
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=62.81 E-value=1.2e+02 Score=27.32 Aligned_cols=169 Identities=15% Similarity=0.179 Sum_probs=85.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 038401 276 KSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWG----KAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVA 351 (542)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (542)
..+++..+...+......+ +......+...+. ...+...|.+.|....+.|.. .....|...|.. |+
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~-G~-- 123 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYAN-GR-- 123 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhc-CC--
Confidence 4567777888877776643 2233333333333 233466677777765555422 222223332222 11
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-----C--CHHHHHHHHH
Q 038401 352 HAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRN-----K--KYANVIEVFE 424 (542)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~A~~~~~ 424 (542)
.-..+..+|...++++.+.|..+-......+...|... - +...|...|.
T Consensus 124 ------------------------gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 124 ------------------------GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred ------------------------CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 00124566666666666655433222223333333322 1 2236777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccC
Q 038401 425 KMRSAGYFPDSHIIALVLNSYGK----LREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARK 484 (542)
Q Consensus 425 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 484 (542)
++-..+ +......+...|.. ..+.++|..+|+++.+.+ +....+.+. .+...|
T Consensus 180 ~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g---~~~a~~~~~-~~~~~g 236 (292)
T COG0790 180 KAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG---DGAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHH-HHHhcC
Confidence 777655 33344444444432 347788888888888877 233333344 555444
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.44 E-value=33 Score=22.07 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=9.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 038401 304 TIIAIWGKAGKLDRAAMLFQKL 325 (542)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~ 325 (542)
.+|.++...|++++|.++.+.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444443
No 428
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.57 E-value=22 Score=29.64 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHH---HHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 038401 18 SVFAYNVVLRNVLRAKQWELAHGLF---DEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQD 83 (542)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~A~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 83 (542)
.-..+...+......++.+...... ++..+ ..|++..|..++..+...|+.++|.++..++...
T Consensus 107 ~~~~~~~~l~~~~~~~~~~~l~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 107 LFDYYAALLLLARLPPDPEMLEAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333444444444555555444443 44444 4689999999999999999999999999999875
No 429
>PRK12798 chemotaxis protein; Reviewed
Probab=61.30 E-value=1.5e+02 Score=28.04 Aligned_cols=185 Identities=15% Similarity=0.069 Sum_probs=102.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHhc--CCCCCCHHH----HHHHHHHhCCHHHH
Q 038401 312 AGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAY-ERVGLVAHAKRLLHELR--QPNTIPRET----AITILARAGRIEEA 384 (542)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~--~~~~~~~~~----l~~~~~~~g~~~~A 384 (542)
.|+..++.+.+..+.....++...-+..|+.+- ....+..+|+++|+... .|+...-.. -+......|+.++.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 566777777777666555555566666666553 33456777777776654 233322222 23445667777777
Q ss_pred HHHHHHHHHcCCCcCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHH
Q 038401 385 TWVFRQAFDAGEVKDISV---FGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS--HIIALVLNSYGKLREFETADDLYS 459 (542)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~ 459 (542)
..+-.+.... +..+++. +..+...+.+.++-..- +.+..++.. ++|+. ..|..+.+.-.-.|+.+-|...-+
T Consensus 205 ~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 205 EALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 6665555544 2233322 22233334443322221 224444442 33433 678888888888899988888888
Q ss_pred HHHHcCCCCch-HHHHHHHH--HHhccCChHHHHHHHHHHhcC
Q 038401 460 EMQEEGCVFSD-QVHFQMLS--LYGARKDFNMLESLFERLDSD 499 (542)
Q Consensus 460 ~~~~~~~~~~~-~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~ 499 (542)
++.......+. .....+.. +-.-..++++|.+.+..+...
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 87775422111 11111222 233466788888888887543
No 430
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=60.58 E-value=1.5e+02 Score=27.84 Aligned_cols=52 Identities=15% Similarity=0.042 Sum_probs=32.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHH--hccCcHHHHHHHHHH
Q 038401 409 LFSRNKKYANVIEVFEKMRSAGYFPDSH----IIALVLNSY--GKLREFETADDLYSE 460 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~--~~~g~~~~A~~~~~~ 460 (542)
.+...+++..|.++|+++......|+.. .+..+..+| +..-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4456778888888888887765444332 233344444 456677888888875
No 431
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.48 E-value=81 Score=24.71 Aligned_cols=89 Identities=11% Similarity=0.131 Sum_probs=54.3
Q ss_pred CCCCcHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCCC-----CCCHHhHHHHHHHHhccCC-HHHHHHHHHHHHhCCC
Q 038401 14 RYSPSVF--AYNVVLRNVLRAKQWELAHGLFDEMRQRGI-----APDRYTYSTLITCFGKEGM-FDSAISWLQQMEQDRV 85 (542)
Q Consensus 14 ~~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~ 85 (542)
+.+++.. ..|.++.-....+++...+.+++.+..... ..+...|+.++.+.+...- --.+..+|..+.+.+.
T Consensus 32 ~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~ 111 (145)
T PF13762_consen 32 NASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDI 111 (145)
T ss_pred ccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCC
Confidence 4566653 457888888888888888888887743210 1234456666666655444 3344556666666556
Q ss_pred CCCHHhHHHHHHHHHhc
Q 038401 86 SGDLVLYSNLIELARKL 102 (542)
Q Consensus 86 ~~~~~~~~~l~~~~~~~ 102 (542)
+.++.-|..++.++.+-
T Consensus 112 ~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 112 EFTPSDYSCLIKAALRG 128 (145)
T ss_pred CCCHHHHHHHHHHHHcC
Confidence 66666666666665543
No 432
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.82 E-value=83 Score=25.74 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=10.8
Q ss_pred HHhccCCHHHHHHHHHHHHh
Q 038401 63 CFGKEGMFDSAISWLQQMEQ 82 (542)
Q Consensus 63 ~~~~~g~~~~a~~~~~~~~~ 82 (542)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555544
No 433
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.75 E-value=1.6e+02 Score=27.86 Aligned_cols=56 Identities=13% Similarity=0.301 Sum_probs=36.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHh--ccCCHHHHHHHHHHHHhC
Q 038401 27 RNVLRAKQWELAHGLFDEMRQRGIAPDRY--TYSTLITCFG--KEGMFDSAISWLQQMEQD 83 (542)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 83 (542)
..+...+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778888888888888876 554444 3444444443 366777888877776554
No 434
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.29 E-value=1.2e+02 Score=26.46 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=33.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCC----CC-------ChhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 038401 198 NIMIDVYGQLDMAKDADRLFWSMRKMGI----DP-------SVVSYNTLLRVYGEAELFGEAIHLFRLMQR 257 (542)
Q Consensus 198 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 257 (542)
..+...|...+++....++++++....- .. =..+|..-+..|....+-.....+|++...
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 3455566666666666666666654311 11 123455556666666666666666665543
No 435
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.96 E-value=59 Score=22.69 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 038401 38 AHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKA 108 (542)
Q Consensus 38 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 108 (542)
+.++++.+.++|+- +......+-.+-...|+.+.|.+++..+. .| +..|...+.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 45666666666654 33344444443345567777777777766 42 23455566666555554433
No 436
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.21 E-value=8.9 Score=29.08 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=23.5
Q ss_pred HHHhhcchhhHHHHHHHHHhcCCCCCC
Q 038401 514 IYERANRLNDASRIMNRMNKRRTFNSS 540 (542)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 540 (542)
....-|...+|..+|++|+++|.+|++
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc
Confidence 455667889999999999999999986
No 437
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=58.05 E-value=93 Score=26.71 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=49.6
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCchHH-----HHH---HH---HHHhccCC-hHHH-HHHHHHHhcC---CCCCchhHH
Q 038401 445 YGKLREFETADDLYSEMQEEGCVFSDQV-----HFQ---ML---SLYGARKD-FNML-ESLFERLDSD---SNINKKELH 508 (542)
Q Consensus 445 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~---l~---~~~~~~g~-~~~A-~~~~~~~~~~---~~~~~~~~~ 508 (542)
+...|+++.|+++...+++.+...|+.. ++. ++ ......|. ++-. ...+..+..+ |+......|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 4567777777777777777776555431 111 11 11222343 2111 2333444322 222224566
Q ss_pred HHHHHHHH---------hhcchhhHHHHHHHHHhcC
Q 038401 509 HVVAGIYE---------RANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 509 ~~l~~~~~---------~~g~~~~A~~~~~~~~~~~ 535 (542)
-.++..+. ..++...|+.+++++...+
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~ 208 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN 208 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC
Confidence 66777663 4467788999999987755
No 438
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.06 E-value=1.7e+02 Score=29.29 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=38.7
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccC
Q 038401 377 RAGRIEEATWVFRQAFDAGEVKD------ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLR 449 (542)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 449 (542)
+..++..+.+.|.....- ++.| ......|..+|....+.|.|.++++++.+ ++| +..+-..+..+....|
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~--~d~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE--VDRQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhc
Confidence 445555555555554443 1122 12233444455555555555555555555 223 2222223333444455
Q ss_pred cHHHHHHHHHHHHH
Q 038401 450 EFETADDLYSEMQE 463 (542)
Q Consensus 450 ~~~~A~~~~~~~~~ 463 (542)
..++|+........
T Consensus 443 ~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 443 KSEEALTCLQKIKS 456 (872)
T ss_pred chHHHHHHHHHHHh
Confidence 55555555555544
No 439
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=57.01 E-value=1.5e+02 Score=26.63 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 038401 299 AITYSTIIAIWGKAGKLDRAA 319 (542)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~ 319 (542)
..+|..|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346888888888888877654
No 440
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.70 E-value=27 Score=18.08 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 038401 381 IEEATWVFRQAFD 393 (542)
Q Consensus 381 ~~~A~~~~~~~~~ 393 (542)
.+.|..+|++++.
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 441
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=56.37 E-value=23 Score=33.31 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHhccCChHHHHHHHHHHhcCCCC-----C--chhHHHHHHHHHHhhcchhhHHHHHHH
Q 038401 476 MLSLYGARKDFNMLESLFERLDSDSNI-----N--KKELHHVVAGIYERANRLNDASRIMNR 530 (542)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 530 (542)
++++++-.|++..|++.++.+..+... . .-..++.+|=+|.-.++|.+|.+.|..
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666654332110 0 013455566666666666666666655
No 442
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.16 E-value=1.2e+02 Score=27.51 Aligned_cols=95 Identities=11% Similarity=0.012 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHH--HH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAG-YFPD--SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQV--HF 474 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~ 474 (542)
...|.-=+.-|.+..++..|...|.+-++.. -.|| ...|+.=..+-...|++..|+.-..+++..+ |+.. .+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~---P~h~Ka~~ 157 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK---PTHLKAYI 157 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC---cchhhhhh
Confidence 4566667778889999999999999887642 2343 3556665556667889999999999988876 5443 23
Q ss_pred HHHHHHhccCChHHHHHHHHHHh
Q 038401 475 QMLSLYGARKDFNMLESLFERLD 497 (542)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~ 497 (542)
.-+.++.....+++|..+.+...
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhh
Confidence 36778888888999999888853
No 443
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.15 E-value=1.2e+02 Score=31.72 Aligned_cols=155 Identities=13% Similarity=0.081 Sum_probs=88.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038401 341 IVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVI 420 (542)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 420 (542)
|..+.+.|-.+-|+.+.++-. .-......+|+++.|++.-++. .+..+|..|+.....+|+.+-|+
T Consensus 627 IaYLqKkgypeiAL~FVkD~~--------tRF~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaE 692 (1202)
T KOG0292|consen 627 IAYLQKKGYPEIALHFVKDER--------TRFELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAE 692 (1202)
T ss_pred HHHHHhcCCcceeeeeecCcc--------hheeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHH
Confidence 333445555555554443311 1234456788888888776654 56778999999988999998888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhcCC
Q 038401 421 EVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDSDS 500 (542)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 500 (542)
-.|++... |..|-..|.-.|+.++-.+..+.+..++ .....+ .... -.|+.++=.+.++..
T Consensus 693 m~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~~~-qnal--Yl~dv~ervkIl~n~---- 753 (1202)
T KOG0292|consen 693 MCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATGQF-QNAL--YLGDVKERVKILENG---- 753 (1202)
T ss_pred HHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHHHH-HHHH--HhccHHHHHHHHHhc----
Confidence 88887765 2333345566777777766666655443 111111 1111 245555555555432
Q ss_pred CCCchhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 501 NINKKELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 501 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
+.. +.+|. .-...|.-++|.++.++.-.
T Consensus 754 g~~-~layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 754 GQL-PLAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred Ccc-cHHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 211 12332 12245666777777766554
No 444
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.58 E-value=90 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhcchhhHHHHH
Q 038401 508 HHVVAGIYERANRLNDASRIM 528 (542)
Q Consensus 508 ~~~l~~~~~~~g~~~~A~~~~ 528 (542)
|...+..+...|++.+|.++|
T Consensus 102 Ye~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 102 YEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 333344444444444444333
No 445
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.12 E-value=90 Score=24.52 Aligned_cols=50 Identities=24% Similarity=0.396 Sum_probs=23.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhH
Q 038401 147 IEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTC 197 (542)
Q Consensus 147 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 197 (542)
.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.+.+.+..|.
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTV 58 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATV 58 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHH
Confidence 33444445443332 233444445555555555566555555444443333
No 446
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.31 E-value=12 Score=28.37 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=12.8
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038401 33 KQWELAHGLFDEMRQRGIAPDRYTYSTLIT 62 (542)
Q Consensus 33 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 62 (542)
|.-.+|-.+|..|+..|-+||. |+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3334445555555555544432 444443
No 447
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=54.10 E-value=38 Score=30.18 Aligned_cols=85 Identities=6% Similarity=0.006 Sum_probs=59.4
Q ss_pred HHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHH-HHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 038401 9 INEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYST-LITCFGKEGMFDSAISWLQQMEQDRVSG 87 (542)
Q Consensus 9 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 87 (542)
.+....+..|+..|...+....+.|.+.+...+|.+..+.+ +.|+..|-. --.-+...++++.+..+|..-++.+..
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~- 174 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR- 174 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-
Confidence 33344567788888888888888888888899998888874 336666654 333455678888888888887776533
Q ss_pred CHHhHHHH
Q 038401 88 DLVLYSNL 95 (542)
Q Consensus 88 ~~~~~~~l 95 (542)
++..|...
T Consensus 175 ~p~iw~ey 182 (435)
T COG5191 175 SPRIWIEY 182 (435)
T ss_pred CchHHHHH
Confidence 44555443
No 448
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.04 E-value=79 Score=27.65 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=12.6
Q ss_pred HHHHHHhccCcHHHHHHHHHHHH
Q 038401 440 LVLNSYGKLREFETADDLYSEMQ 462 (542)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~~~ 462 (542)
.+...|...|++++|.++|+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555555553
No 449
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.61 E-value=1.1e+02 Score=30.74 Aligned_cols=90 Identities=11% Similarity=0.083 Sum_probs=53.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCC--CCCChhHHHHHHHHHHhcCcHH------HHHHHHHHHHhcCCCCcHHHHHHH
Q 038401 199 IMIDVYGQLDMAKDADRLFWSMRKMG--IDPSVVSYNTLLRVYGEAELFG------EAIHLFRLMQRKEIEQNVVTYNTM 270 (542)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 270 (542)
.+..+|...|++-.+.++++.+.... -+.-...+|..++...+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67888888888888888888877543 1222445677777777777654 2333333332 44577777777
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 038401 271 IKIYGKSLEHEKATNLMQEMQ 291 (542)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~ 291 (542)
+++-....+.....-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766544333333333444443
No 450
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=53.22 E-value=94 Score=23.23 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHhhcchhhHHHHHH
Q 038401 504 KKELHHVVAGIYERANRLNDASRIMN 529 (542)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 529 (542)
+.+.+...+.-+...|++++|.+++.
T Consensus 69 ~~~~~~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 69 PEELLEQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34677777778888888888888776
No 451
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.12 E-value=1.4e+02 Score=27.00 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH------HHHHHhccCChHHHHHHHHH--HhcCCCCCch-
Q 038401 435 SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ------MLSLYGARKDFNMLESLFER--LDSDSNINKK- 505 (542)
Q Consensus 435 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~- 505 (542)
...-..+...|.+.++|+.|.+.+.-+...++.......+. ++.+|...|+..+|..++.+ +......++.
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Q ss_pred --hHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCCCC
Q 038401 506 --ELHHVVAGIYERANRLNDASRIMNRMNKRRTFNSS 540 (542)
Q Consensus 506 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 540 (542)
..-.+-++++-..+++=||.+-|-+.....+-+..
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~e~ 219 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVDES 219 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
No 452
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=53.12 E-value=1.8e+02 Score=26.54 Aligned_cols=131 Identities=9% Similarity=-0.003 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhCCC----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHH
Q 038401 70 FDSAISWLQQMEQDRV----SGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARL 145 (542)
Q Consensus 70 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 145 (542)
.+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++.... .++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567777877776421 34566666677777788887766666666664 3467778888899998999998889
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHHCCCh--HHHHHHHHH----HHhcCCCCChhhHHHHHHHHhc
Q 038401 146 LIEEMREQG-VKPDTVSYSTLLNLYVENHKF--VEALSVFAE----MNEVNCPLDLTTCNIMIDVYGQ 206 (542)
Q Consensus 146 ~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~ 206 (542)
+++.....+ +++. .. ..++..+...+.. +.+.+.+.. +.+. ...+......++..+..
T Consensus 223 ~l~~~l~~~~v~~~-d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ-DI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HHHHHHCTSTS-TT-TH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCT
T ss_pred HHHHHcCCcccccH-HH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhc
Confidence 999888754 4333 23 3344444434433 555554433 3332 22222245555555433
No 453
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=52.82 E-value=1.3e+02 Score=28.38 Aligned_cols=85 Identities=12% Similarity=0.095 Sum_probs=47.8
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHH---------HhccCChHHHHHHHHHHhcCC
Q 038401 430 GYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSL---------YGARKDFNMLESLFERLDSDS 500 (542)
Q Consensus 430 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~ 500 (542)
.+.||..+.+.+...+...-..+-...+|+--.++. .|-.+.+..+-+ -.+...-++++++++.++..-
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa--DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA--DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 466777766666666655556666666666666654 344444431111 123445677777777766555
Q ss_pred CCCchhHHHHHHHHHH
Q 038401 501 NINKKELHHVVAGIYE 516 (542)
Q Consensus 501 ~~~~~~~~~~l~~~~~ 516 (542)
...+..-++.|+.-|+
T Consensus 256 ~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYS 271 (669)
T ss_pred ccccchhHHHHHHHHh
Confidence 4444455556655554
No 454
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.52 E-value=50 Score=19.88 Aligned_cols=21 Identities=14% Similarity=0.423 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHH
Q 038401 140 FKEARLLIEEMREQGVKPDTV 160 (542)
Q Consensus 140 ~~~a~~~~~~~~~~g~~~~~~ 160 (542)
..++..++++|.+.|+.-+..
T Consensus 18 I~~~~~~l~~l~~~g~~is~~ 38 (48)
T PF11848_consen 18 ISEVKPLLDRLQQAGFRISPK 38 (48)
T ss_pred hhhHHHHHHHHHHcCcccCHH
Confidence 333333344443333333333
No 455
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=52.46 E-value=1e+02 Score=23.45 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 038401 419 VIEVFEKMRSAGYFPD-SHIIALVLNSYGKLREFETADDLYS 459 (542)
Q Consensus 419 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 459 (542)
..++|..|.+.|+--. +..|......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555666655544332 2344445555555666666665554
No 456
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=52.37 E-value=2e+02 Score=26.90 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHH-HhccCChHHHHHHHHHHhc--CCC---CCchhHHHHHHHH
Q 038401 442 LNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSL-YGARKDFNMLESLFERLDS--DSN---INKKELHHVVAGI 514 (542)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~-~~~~g~~~~A~~~~~~~~~--~~~---~~~~~~~~~l~~~ 514 (542)
+..+.+.|-+..|.++.+-+...++. .|+.... .+.. ..++++++--+++.+.... ... ..|. .-+..+-+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aLA 187 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIALA 187 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHHH
Confidence 45667889999999999999988733 1333333 4444 4478888888888887443 111 1122 23344555
Q ss_pred HHhhcch---------------hhHHHHHHHHHh
Q 038401 515 YERANRL---------------NDASRIMNRMNK 533 (542)
Q Consensus 515 ~~~~g~~---------------~~A~~~~~~~~~ 533 (542)
+...++. ++|...++++..
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHH
Confidence 5566666 777777776543
No 457
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=51.99 E-value=2.4e+02 Score=27.56 Aligned_cols=179 Identities=17% Similarity=0.186 Sum_probs=106.1
Q ss_pred CccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 038401 121 VPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIM 200 (542)
Q Consensus 121 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 200 (542)
+.|.....+++..+..+....-.+.+..+|..-| -+-..+..++.+|..+ ..++-..+++++.+..+. |++.-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4456666777778887777777788888877754 3666777788887777 556667777777775432 33333334
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCC-----CChhHHHHHHHHHHhcCcHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHH
Q 038401 201 IDVYGQLDMAKDADRLFWSMRKMGID-----PSVVSYNTLLRVYGEAELFGEAIHLFRLMQRK-EIEQNVVTYNTMIKIY 274 (542)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 274 (542)
...|-+ ++.+.+...|..+...=++ .-...|.-+... -..+.+....+..++... |...-...+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444433 6667777777766543221 111233333321 134556666666655543 3334445555566667
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038401 275 GKSLEHEKATNLMQEMQNRGIEPNAITYSTIIA 307 (542)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 307 (542)
....++++|++++..+.++. .-|...-..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 77777777777777777664 234444444444
No 458
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.91 E-value=1.5e+02 Score=26.57 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038401 284 TNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYE 345 (542)
Q Consensus 284 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 345 (542)
.++++.+.+.++.|.-..|..+.-.+.+.-.+...+.+|+.+... +.-+..++..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 456677777777777777777766677777777778888777653 223555555554
No 459
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.04 E-value=88 Score=27.33 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=42.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHhc----CCCCCc-hhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 475 QMLSLYGARKDFNMLESLFERLDS----DSNINK-KELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
.++.-|.+.|++++|.++|+.+.. ++.... ......+..++...|+.++.+.+.-++.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 388999999999999999999732 222211 2556667778888899888887766553
No 460
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.58 E-value=2.1e+02 Score=26.19 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=24.1
Q ss_pred hccCcHHHHHHHHHHHHHcC--CCCchHHHHH---HHHHHhccCChHHHHHHHHHH
Q 038401 446 GKLREFETADDLYSEMQEEG--CVFSDQVHFQ---MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 446 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~ 496 (542)
.+.++.++|.++++++.+.- ...|+.+.+. .+.++...|+..++.+.+...
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~ 141 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDL 141 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34445555555555554431 1123333333 344555555555555555553
No 461
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=49.33 E-value=45 Score=21.79 Aligned_cols=51 Identities=20% Similarity=0.103 Sum_probs=36.2
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhcc
Q 038401 16 SPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKE 67 (542)
Q Consensus 16 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 67 (542)
.|+...++.++...++..-.++++..+.++...|. .+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 45666777888888888888888888888888775 3666777666666553
No 462
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.08 E-value=1.8e+02 Score=29.38 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCC--CCccHhHHHHHHHHHhccCcHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 038401 94 NLIELARKLSDYSKAISIFSRLKSSG--IVPDLVAYNTMINVFGKAKLFK------EARLLIEEMREQGVKPDTVSYSTL 165 (542)
Q Consensus 94 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~g~~~~~~~~~~l 165 (542)
+|+.+|...|++-.+.++++.+.... -+.-...+|..|+...+.|.++ .+.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999988642 2333567888888888888764 3444444444 34578888887
Q ss_pred HHHHHHCCChHHHHHHHHHHHh
Q 038401 166 LNLYVENHKFVEALSVFAEMNE 187 (542)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~ 187 (542)
+.+-...-+-.-..-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765543333333344444443
No 463
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.26 E-value=1.3e+02 Score=23.68 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=32.9
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 038401 389 RQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLR 449 (542)
Q Consensus 389 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 449 (542)
+.+.+.|.+.++. -..++..+...++.-.|.++++++.+.+...+..|.-..+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555555443 23455666666666777777777777654444444433444444444
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.24 E-value=42 Score=29.89 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=22.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 038401 267 YNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITY 302 (542)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 302 (542)
|+..|....+.||+++|++++++.++.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 446666666666777777777666666654433343
No 465
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.16 E-value=42 Score=29.89 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCCCC
Q 038401 22 YNVVLRNVLRAKQWELAHGLFDEMRQRGIA 51 (542)
Q Consensus 22 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 51 (542)
|+..|....+.|++++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555556666666666655555544
No 466
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.94 E-value=1.9e+02 Score=25.15 Aligned_cols=53 Identities=8% Similarity=-0.034 Sum_probs=24.2
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 375 LARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRS 428 (542)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 428 (542)
+...|++-++++....++.. .+.+...|-.-..+.+..=+.++|..-|..+++
T Consensus 240 ~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 33444555555544444443 223444444444444444444555555555544
No 467
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.89 E-value=1.9e+02 Score=25.14 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 038401 235 LLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIY 274 (542)
Q Consensus 235 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (542)
++....+.++++++...++.+...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444445555555555555555554444444444444444
No 468
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.45 E-value=2.3e+02 Score=25.79 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=68.1
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---CCchH
Q 038401 396 EVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA-GYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGC---VFSDQ 471 (542)
Q Consensus 396 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ 471 (542)
+..|...++.|..+ ...+.++--+..+...+. |-.--...+.....-|++-|+.+.|.+.+.+..+... ..-+.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34455555555432 122333333344444432 2111235666777889999999999999888766531 12233
Q ss_pred HHHH--HHHHHhccCChHHHHHHHHHHhcCCC-CCch---hHHHHHHHHHHhhcchhhHHHHHHH
Q 038401 472 VHFQ--MLSLYGARKDFNMLESLFERLDSDSN-INKK---ELHHVVAGIYERANRLNDASRIMNR 530 (542)
Q Consensus 472 ~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 530 (542)
..+. ++-.|....-+.+-++-.+.+...++ .... ..|..+ -+..-.++.+|..+|-.
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld 206 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLD 206 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHH
Confidence 3332 56666665555555555555433433 2221 223221 12233567777777654
No 469
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=46.35 E-value=2.4e+02 Score=25.87 Aligned_cols=116 Identities=12% Similarity=0.184 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh------ccCcHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHhccCChH
Q 038401 415 KYANVIEVFEKMRSAGYFPDSHIIALVLNSYG------KLREFETADDLYSEMQEEGCVFSDQ-VHFQMLSLYGARKDFN 487 (542)
Q Consensus 415 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 487 (542)
-.+++..++.+....+. |.+..+...+.++- ..-+|..-..+|+.+.... |.+ ++..-+-+.....-.+
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a---pSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA---PSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC---CCCeEeehHHHHHHHhhhHH
Confidence 35778888888887654 77777766665552 2346788888888877765 322 2222333444444567
Q ss_pred HHHHHHHHHhcCCCCCch-hHHHHHHHHHHhhcchhhHHHHHHHHHhc
Q 038401 488 MLESLFERLDSDSNINKK-ELHHVVAGIYERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 488 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 534 (542)
.+...++.+..+|..+.. ..+..-++.+.+.|+.++|...|++....
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 777888887666544333 34556788899999999999999987653
No 470
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.58 E-value=55 Score=21.36 Aligned_cols=46 Identities=7% Similarity=0.127 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038401 298 NAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAY 344 (542)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (542)
+...++.++...++..-.+.++..+.++.+.|. .+..+|..-++.+
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 334445555555555555555555555555442 3444444444433
No 471
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.29 E-value=2e+02 Score=24.75 Aligned_cols=111 Identities=10% Similarity=0.102 Sum_probs=63.5
Q ss_pred hCCCCCcHHHHHHHHHHHH--HhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH
Q 038401 12 EARYSPSVFAYNVVLRNVL--RAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDL 89 (542)
Q Consensus 12 ~~~~~~~~~~~~~ll~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 89 (542)
..+++++ |...++++. .+++++.|.+.+-. ..+.| .....++.++...|+.+.|+.++....... .+.
T Consensus 72 ~f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~ 141 (226)
T PF13934_consen 72 AFGIPPK---YIKFIQGFWLLDHGDFEEALELLSH---PSLIP--WFPDKILQALLRRGDPKLALRYLRAVGPPL--SSP 141 (226)
T ss_pred HhCCCHH---HHHHHHHHHHhChHhHHHHHHHhCC---CCCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCH
Confidence 3444444 334444443 45777788777622 12222 223458888888999999999988764321 122
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhc
Q 038401 90 VLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGK 136 (542)
Q Consensus 90 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (542)
.....++.. ...+.+.+|..+-+...+. -....+..++..+..
T Consensus 142 ~~~~~~~~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 142 EALTLYFVA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHH
Confidence 333333334 6668888888877766542 113455666655553
No 472
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.25 E-value=1.7e+02 Score=26.39 Aligned_cols=71 Identities=7% Similarity=0.121 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHh----------ccCCHHHH
Q 038401 144 RLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYG----------QLDMAKDA 213 (542)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a 213 (542)
.++++.+...++.|.-..+..+.-.+.+.=.+..++.+++.+... +.-|..++..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467888888888888888888877788888888888888888763 222555555554 35778877
Q ss_pred HHHHHH
Q 038401 214 DRLFWS 219 (542)
Q Consensus 214 ~~~~~~ 219 (542)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 777654
No 473
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.99 E-value=2.2e+02 Score=24.76 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=20.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038401 306 IAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAY 344 (542)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (542)
+....+.|+++++...+..+...+...+..-.+.+..+|
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 344445566666666666666555555555555554444
No 474
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.10 E-value=1.4e+02 Score=21.97 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 038401 209 MAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQ 288 (542)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (542)
..++|..+.+.+...+. -...+--+-+..+.+.|++++|+ . .-. ....||...|.+|.. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l-~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--L-LPQ-CHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--H-HHT-TS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--H-hcc-cCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34556666665555432 12222222334455666666661 1 111 122455555544433 24555556555555
Q ss_pred HHHHcC
Q 038401 289 EMQNRG 294 (542)
Q Consensus 289 ~~~~~~ 294 (542)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554443
No 475
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.88 E-value=95 Score=20.03 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=23.8
Q ss_pred HHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-----hccCCHHHHHHH
Q 038401 29 VLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCF-----GKEGMFDSAISW 76 (542)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~ 76 (542)
+...|++=+|.++++.+-.....|....+..+|... .+.|+...|.++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345666667777776665432233444555555432 234555555443
No 476
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.86 E-value=2.5e+02 Score=24.85 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=13.9
Q ss_pred HHHhhcchhhHHHHHHHHHhc
Q 038401 514 IYERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~ 534 (542)
-|.-.|+...|...+....++
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 455567777777777666554
No 477
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.02 E-value=2.6e+02 Score=24.76 Aligned_cols=88 Identities=17% Similarity=0.027 Sum_probs=41.1
Q ss_pred HHHHHHHhcCHHHHHHHHH----HHHhCCCCCCHHhHHHHHHHHhccCCHH-HHHHHHHHHHhC-----CCCCCHHhHHH
Q 038401 25 VLRNVLRAKQWELAHGLFD----EMRQRGIAPDRYTYSTLITCFGKEGMFD-SAISWLQQMEQD-----RVSGDLVLYSN 94 (542)
Q Consensus 25 ll~~~~~~~~~~~A~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~-----~~~~~~~~~~~ 94 (542)
-...+.+.|+...|.++-. -..+.+.+++......++..+...+.-+ +-.++.+.+.+. ....++.....
T Consensus 16 Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~ 95 (260)
T PF04190_consen 16 GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHL 95 (260)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHH
T ss_pred HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHH
Confidence 3445566777666555433 3334466666665566665554433211 122222222221 12235666777
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 038401 95 LIELARKLSDYSKAISIF 112 (542)
Q Consensus 95 l~~~~~~~~~~~~a~~~~ 112 (542)
+...+.+.+++.+|...|
T Consensus 96 ~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 96 LAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHH
Confidence 777777777777766554
No 478
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.99 E-value=1.5e+02 Score=21.91 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHh
Q 038401 162 YSTLLNLYVENHKFVEALSVFAEMNE 187 (542)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (542)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56677777777777777777776655
No 479
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.83 E-value=2e+02 Score=26.27 Aligned_cols=92 Identities=9% Similarity=0.003 Sum_probs=69.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHh
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEV---KDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYG 446 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 446 (542)
-..-|.+..++..|...|.+.++.... .+...|+.-..+-...|++..|+.-..+.+. +.|+. ..+..=..++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhHHHH
Confidence 356678888999999999999875432 2466777777777788999999999888888 56754 44545556777
Q ss_pred ccCcHHHHHHHHHHHHHc
Q 038401 447 KLREFETADDLYSEMQEE 464 (542)
Q Consensus 447 ~~g~~~~A~~~~~~~~~~ 464 (542)
...++++|..+.+.....
T Consensus 165 eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 888889999888877653
No 480
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.71 E-value=1.5e+02 Score=21.89 Aligned_cols=26 Identities=19% Similarity=0.542 Sum_probs=16.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh
Q 038401 57 YSTLITCFGKEGMFDSAISWLQQMEQ 82 (542)
Q Consensus 57 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 82 (542)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666665554
No 481
>PRK09857 putative transposase; Provisional
Probab=40.61 E-value=2.8e+02 Score=25.08 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=38.2
Q ss_pred hccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCCC
Q 038401 481 GARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRTFNS 539 (542)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 539 (542)
...|+.++-.++++.+.... +...+....++.-+...|.-+++++..++|...|+..+
T Consensus 217 ~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 45566666666666654321 11234555777777777887888888899988887754
No 482
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.48 E-value=3.5e+02 Score=26.17 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=44.7
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHH
Q 038401 98 LARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVE 177 (542)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 177 (542)
.....|+++.+.+.+...... +.....+...++....+.|+++.|...-+-|....+. +...........-..|-+++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 344556666666655544332 1223445555566666666666666666666554433 22222222222233455556
Q ss_pred HHHHHHHHHhcC
Q 038401 178 ALSVFAEMNEVN 189 (542)
Q Consensus 178 a~~~~~~~~~~~ 189 (542)
+.-.++++...+
T Consensus 410 ~~~~wk~~~~~~ 421 (831)
T PRK15180 410 SYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccC
Confidence 666665555443
No 483
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.04 E-value=1.2e+02 Score=24.53 Aligned_cols=65 Identities=15% Similarity=0.039 Sum_probs=0.0
Q ss_pred hhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC
Q 038401 3 VAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEG 68 (542)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 68 (542)
++-+..+.+..|+.++..-. .++..+...++.-.|.++++.+.+.+..++..|....+..+...|
T Consensus 10 ~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 10 LAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
No 484
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.99 E-value=1.3e+02 Score=22.11 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=14.6
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhCC
Q 038401 25 VLRNVLRAKQWELAHGLFDEMRQRG 49 (542)
Q Consensus 25 ll~~~~~~~~~~~A~~~~~~~~~~~ 49 (542)
+++.+.++...++|+++++-|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555666666666666666655
No 485
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=38.86 E-value=1.6e+02 Score=21.69 Aligned_cols=79 Identities=27% Similarity=0.238 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 038401 34 QWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFS 113 (542)
Q Consensus 34 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 113 (542)
..++|..+.+-+...+.. ...+--.-+..+...|+|++|+ . . ......||...|..|. -.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL--l-~-~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL--L-L-PQCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH--H-H-HTTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH--H-h-cccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 456677777766665421 1112222233455677777771 1 1 1122455666655443 346666666666666
Q ss_pred HhHhCC
Q 038401 114 RLKSSG 119 (542)
Q Consensus 114 ~~~~~~ 119 (542)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 666555
No 486
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.83 E-value=3e+02 Score=25.01 Aligned_cols=53 Identities=9% Similarity=0.236 Sum_probs=25.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHH
Q 038401 406 MIELFSRNKKYANVIEVFEKMRSAGYFPDS---HIIALVLNSYGKLREFETADDLYSE 460 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (542)
|..+..+.|+..+|.+.|+.+.+. .|=. .....++.++....-+.+...++-+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444566667776666666542 1311 1223455555555444444444433
No 487
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.66 E-value=2.4e+02 Score=23.68 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHhc-CCCCCchhHHHHHHHHHH
Q 038401 486 FNMLESLFERLDS-DSNINKKELHHVVAGIYE 516 (542)
Q Consensus 486 ~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 516 (542)
+++..+-++++.. -|..++.+.|+..+-++.
T Consensus 158 ~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L 189 (199)
T PF04090_consen 158 YQQLIERIDELVLSPPYMDDGELWFIRGMCHL 189 (199)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 4444444444333 344445567766666553
No 488
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=38.24 E-value=5.6e+02 Score=27.89 Aligned_cols=277 Identities=12% Similarity=-0.003 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 038401 191 PLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTM 270 (542)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 270 (542)
.|...-...++.. +......+...+. .+|+.+-...+..+.+.+..+....+...+. .++...-...
T Consensus 606 ~~~~~~~~~~~~l-----~~~~~~~L~~~L~----D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~----D~d~~VR~~A 672 (897)
T PRK13800 606 EPPSPRILAVLAL-----DAPSVAELAPYLA----DPDPGVRRTAVAVLTETTPPGFGPALVAALG----DGAAAVRRAA 672 (897)
T ss_pred CCchHHHHHHHhc-----cchhHHHHHHHhc----CCCHHHHHHHHHHHhhhcchhHHHHHHHHHc----CCCHHHHHHH
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 038401 271 IKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLV 350 (542)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (542)
+.++.+.+........+..+... +|...-...+.++...+..+. ..+-.+.+ .+|..+-...+.++.+.+..
T Consensus 673 a~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL~~~~~~~~--~~l~~~L~---D~d~~VR~~Av~aL~~~~~~ 744 (897)
T PRK13800 673 AEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVLRALRAGDA--ALFAAALG---DPDHRVRIEAVRALVSVDDV 744 (897)
T ss_pred HHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHHHhhccCCH--HHHHHHhc---CCCHHHHHHHHHHHhcccCc
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHH-HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038401 351 AHAKRLLHELRQPNTIPRETAITILARAGRIEE-ATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA 429 (542)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 429 (542)
+. +...+..++.......+.++...+..+. +...+..+.+. +++..-...+.++...|....+...+..+++
T Consensus 745 ~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~- 817 (897)
T PRK13800 745 ES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALR- 817 (897)
T ss_pred HH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhc-
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhcCCC
Q 038401 430 GYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDSDSN 501 (542)
Q Consensus 430 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 501 (542)
.++...-...+.++...+. +++...+..+++.. ...+-...+.++.+.+....+...+.+...+.+
T Consensus 818 --d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~---~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d 883 (897)
T PRK13800 818 --ASAWQVRQGAARALAGAAA-DVAVPALVEALTDP---HLDVRKAAVLALTRWPGDPAARDALTTALTDSD 883 (897)
T ss_pred --CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCC---CHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCC
No 489
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=37.84 E-value=11 Score=37.36 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHh
Q 038401 406 MIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLN--SYGKLREFETADDLYSEMQEEGCVFSDQVHFQ--MLSLYG 481 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~ 481 (542)
-++++...|++..|..++.++....+.|.......++. .....|++++|...+.........++....+. .+.++.
T Consensus 30 Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~ 109 (536)
T PF04348_consen 30 AARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYE 109 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHH
Confidence 34556667777777777776664444444433333333 33456667777776664322221111222222 345555
Q ss_pred ccCChHHHHH
Q 038401 482 ARKDFNMLES 491 (542)
Q Consensus 482 ~~g~~~~A~~ 491 (542)
..|++-+|.+
T Consensus 110 ~~~~~l~Aa~ 119 (536)
T PF04348_consen 110 QQGDPLAAAR 119 (536)
T ss_dssp ----------
T ss_pred hcCCHHHHHH
Confidence 5565544443
No 490
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=37.69 E-value=78 Score=21.68 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=6.8
Q ss_pred chhhHHHHHHHHH
Q 038401 520 RLNDASRIMNRMN 532 (542)
Q Consensus 520 ~~~~A~~~~~~~~ 532 (542)
.|+.|.++-++|.
T Consensus 54 ~w~~ar~~~~Km~ 66 (79)
T cd02679 54 QWERARRLQQKMK 66 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 491
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=37.42 E-value=5e+02 Score=27.04 Aligned_cols=72 Identities=18% Similarity=0.081 Sum_probs=38.2
Q ss_pred CCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCC---C----------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 038401 49 GIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDR---V----------SGDLVLYSNLIELARKLSDYSKAISIFSRL 115 (542)
Q Consensus 49 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 115 (542)
|+..+......++... .|+...++.+++++...| + ..+......++.++.. ++...++.+++.+
T Consensus 195 gi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~~L 271 (709)
T PRK08691 195 KIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQEM 271 (709)
T ss_pred CCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 4444444444444432 455555555555443311 0 1133334445554444 7788888888888
Q ss_pred HhCCCCcc
Q 038401 116 KSSGIVPD 123 (542)
Q Consensus 116 ~~~~~~~~ 123 (542)
...|..+.
T Consensus 272 ~~~G~d~~ 279 (709)
T PRK08691 272 AACAVGFD 279 (709)
T ss_pred HHhCCCHH
Confidence 87776543
No 492
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=37.31 E-value=5.4e+02 Score=28.64 Aligned_cols=156 Identities=11% Similarity=0.005 Sum_probs=93.7
Q ss_pred HHHhCCHHHHHH------HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCC--CHHHHHHH
Q 038401 375 LARAGRIEEATW------VFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRS-----AGYFP--DSHIIALV 441 (542)
Q Consensus 375 ~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p--~~~~~~~l 441 (542)
....|.+.+|.+ ++......-.++....|..+...+-+.|+.++|+..-.+..- .|..+ +...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344566665555 555444333445567788888888899999998876554421 13322 23456666
Q ss_pred HHHHhccCcHHHHHHHHHHHHHc-----CC-CCchHHHHH-HHHHHhccCChHHHHHHHHHHhcC----CC---CCchhH
Q 038401 442 LNSYGKLREFETADDLYSEMQEE-----GC-VFSDQVHFQ-MLSLYGARKDFNMLESLFERLDSD----SN---INKKEL 507 (542)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~~ 507 (542)
.-.+...+....|...+.++... +. .||...... +...+...+.++.|.+.++..... .+ ......
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 65666667888888888887764 22 233333333 445555668888888888874321 11 123355
Q ss_pred HHHHHHHHHhhcchhhHHHHHHH
Q 038401 508 HHVVAGIYERANRLNDASRIMNR 530 (542)
Q Consensus 508 ~~~l~~~~~~~g~~~~A~~~~~~ 530 (542)
|..+++++...|.+..|....+.
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhh
Confidence 77777777777766665554443
No 493
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.54 E-value=3.4e+02 Score=24.83 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=11.0
Q ss_pred HHHHHHhCCHHHHHHHHHHH
Q 038401 372 ITILARAGRIEEATWVFRQA 391 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~ 391 (542)
...|++.|+-+.|.+.+++.
T Consensus 111 aeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 111 AEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 44455666666665555444
No 494
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.36 E-value=74 Score=23.60 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=25.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC
Q 038401 25 VLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEG 68 (542)
Q Consensus 25 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 68 (542)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 44445555555566666666666665555555555555555544
No 495
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.20 E-value=77 Score=21.56 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCCC
Q 038401 24 VVLRNVLRAKQWELAHGLFDEMRQRGI 50 (542)
Q Consensus 24 ~ll~~~~~~~~~~~A~~~~~~~~~~~~ 50 (542)
++++.+.++..-++|+++++-+.++|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 456667889999999999999999873
No 496
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.82 E-value=4.2e+02 Score=25.79 Aligned_cols=433 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHhcCHHHHHHHHHHHHhCCCCCCHH------hHHHHHHHHhccC-CHHHHHHHHHHHHhC---CCCCCHHhHHHHHHH
Q 038401 29 VLRAKQWELAHGLFDEMRQRGIAPDRY------TYSTLITCFGKEG-MFDSAISWLQQMEQD---RVSGDLVLYSNLIEL 98 (542)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~ 98 (542)
+.-.++++.|..-++......-..... ++..+...+.... .+..+..++.+..+. .+--.-.....++..
T Consensus 57 ~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql 136 (629)
T KOG2300|consen 57 LRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQL 136 (629)
T ss_pred HHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhc---------cCcHHHHHHHHHHHHHcCCCCCHHHHHHH----
Q 038401 99 ARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGK---------AKLFKEARLLIEEMREQGVKPDTVSYSTL---- 165 (542)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---- 165 (542)
..-..|+..|.+++.--.+.. .+-...|..++..+.+ ..++..+.....++.+. ..+|...-..+
T Consensus 137 ~~idkD~~sA~elLavga~sA-d~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFy 214 (629)
T KOG2300|consen 137 HIIDKDFPSALELLAVGAESA-DHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFY 214 (629)
T ss_pred HhhhccchhHHHHHhcccccc-chhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHH
Q ss_pred ----HHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 038401 166 ----LNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGE 241 (542)
Q Consensus 166 ----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 241 (542)
+..|...|+...+...++++.+.--...+.. ......--..--...|..+.+. ..+.-+|..-...-..
T Consensus 215 l~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~-----~~h~e~ilgsps~~l~~wlpke--qicaLV~l~tv~hsm~ 287 (629)
T KOG2300|consen 215 LVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS-----RGHDEKILGSPSPILFEWLPKE--QICALVYLVTVIHSMP 287 (629)
T ss_pred HHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC-----CCccccccCCCChHHHhhccHh--hhHhhhhhhHHhhhhh
Q ss_pred cCcHHHHHHHHHHHHhc---CCCCc----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCC--------H
Q 038401 242 AELFGEAIHLFRLMQRK---EIEQN----------VVTYNTMIKIYGKSLEHEKATNLMQEMQNR-GIEPN--------A 299 (542)
Q Consensus 242 ~~~~~~a~~~~~~~~~~---~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~--------~ 299 (542)
.|-+++|.++-+++... -...+ ..+...++.+=.-.|+..+|++-+.+|.+- .-.|. .
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 038401 300 ITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLY--QTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILAR 377 (542)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 377 (542)
.....+.--++..+.++.|..-|....+.--..|...+ ..+...|.+.|+.+.-.++++.+..++..++..-.
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~----- 442 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQR----- 442 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHH-----
Q ss_pred hCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhccCcHH
Q 038401 378 AGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA-----GYFPDSHIIALVLNSYGKLREFE 452 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~ 452 (542)
.....+-..+-....++++.||...+.+-++. ..+...-.+..+...+...|+..
T Consensus 443 --------------------l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~ 502 (629)
T KOG2300|consen 443 --------------------LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTV 502 (629)
T ss_pred --------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchH
Q ss_pred HHHHHHHHHHHcCCCCchHHHHH-----HHHHHhccCC--hHHHHHHHHH
Q 038401 453 TADDLYSEMQEEGCVFSDQVHFQ-----MLSLYGARKD--FNMLESLFER 495 (542)
Q Consensus 453 ~A~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~--~~~A~~~~~~ 495 (542)
++.+...-........||..... +-..+..+|+ .+...+.+.+
T Consensus 503 es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 503 ESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
No 497
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.82 E-value=5.6e+02 Score=27.17 Aligned_cols=50 Identities=14% Similarity=0.275 Sum_probs=30.5
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 038401 132 NVFGKAKLFKEARLLIEEMREQGVKPDT--VSYSTLLNLYVENHKFVEALSVFAEMNE 187 (542)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (542)
..|...|+++.|+++-+.- |+. ..+..-...|...+++..|-++|.++.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 3455667777776654432 222 2334445667777888888888877743
No 498
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.72 E-value=5.6e+02 Score=27.16 Aligned_cols=49 Identities=10% Similarity=0.069 Sum_probs=31.6
Q ss_pred HHHHHhcCHHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038401 27 RNVLRAKQWELAHGLFDEMRQRGIAPDR--YTYSTLITCFGKEGMFDSAISWLQQME 81 (542)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 81 (542)
..|...|+++.|.++-+.- |+. .++..-...+.+.+++..|.++|.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3466788888888764322 222 133444456677888888888888773
No 499
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.17 E-value=3.5e+02 Score=24.65 Aligned_cols=110 Identities=11% Similarity=-0.055 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHH
Q 038401 140 FKEARLLIEEMREQGV----KPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADR 215 (542)
Q Consensus 140 ~~~a~~~~~~~~~~g~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 215 (542)
.+.|.+.|+.+...+. ..+......++....+.|+.+.-..+++..... .+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677888888777422 345556666777777788766655666555543 366777888888888888888888
Q ss_pred HHHHHHHCC-CCCChhHHHHHHHHHHhcCc--HHHHHHHHHH
Q 038401 216 LFWSMRKMG-IDPSVVSYNTLLRVYGEAEL--FGEAIHLFRL 254 (542)
Q Consensus 216 ~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~ 254 (542)
+++.+...+ +++ .. ...++..+...+. .+.+++.+..
T Consensus 223 ~l~~~l~~~~v~~-~d-~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRS-QD-IRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-T-TT-HHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCccccc-HH-HHHHHHHHhcCChhhHHHHHHHHHH
Confidence 888888754 333 33 3344444443333 3666665543
No 500
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=34.75 E-value=1.8e+02 Score=28.45 Aligned_cols=81 Identities=14% Similarity=-0.030 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHH--HHHHHhccCChHHHHHHHHHH--hcCCCCCchhHHHHHHHHHHhhcchhhHHH
Q 038401 451 FETADDLYSEMQEEGCVFSDQVHFQ--MLSLYGARKDFNMLESLFERL--DSDSNINKKELHHVVAGIYERANRLNDASR 526 (542)
Q Consensus 451 ~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 526 (542)
+..|+..|.+....- |+..... .+.++.+.+....+...+... ...++.....+++.|++++...+++.+|++
T Consensus 390 ~~~~i~~~s~a~q~~---~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYV---PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred HHHHHHHHHHHhhhc---cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 344555555555443 3332222 455555555444444444431 112222233556666666666666666666
Q ss_pred HHHHHHhc
Q 038401 527 IMNRMNKR 534 (542)
Q Consensus 527 ~~~~~~~~ 534 (542)
.....+..
T Consensus 467 ~~~alq~~ 474 (758)
T KOG1310|consen 467 CHWALQMS 474 (758)
T ss_pred hHHHHhhc
Confidence 66555443
Done!