Query 038401
Match_columns 542
No_of_seqs 720 out of 2921
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 18:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.9E-42 1.3E-46 344.2 41.6 489 30-535 64-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.8E-41 6.3E-46 339.3 40.2 485 17-516 82-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3E-28 1E-32 229.6 45.3 380 96-519 6-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 7.8E-28 2.7E-32 226.8 45.8 378 63-484 8-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 2E-30 6.8E-35 247.6 25.4 204 108-311 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.3E-30 7.8E-35 247.1 25.1 201 41-241 12-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 2.4E-25 8.3E-30 218.3 39.5 442 18-496 5-475 (514)
8 2gw1_A Mitochondrial precursor 100.0 1.3E-25 4.4E-30 220.2 37.1 268 264-537 186-481 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.8E-23 6E-28 201.3 38.7 386 109-525 12-445 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 5.9E-23 2E-27 197.7 40.6 356 71-465 9-411 (450)
11 3fp2_A TPR repeat-containing p 99.9 2.2E-23 7.6E-28 205.5 37.2 428 19-465 25-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 2E-23 6.8E-28 205.8 36.2 434 53-501 24-494 (537)
13 2xm6_A Protein corresponding t 99.9 3.2E-19 1.1E-23 172.9 47.5 348 88-496 38-429 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 4E-20 1.4E-24 172.1 37.0 328 158-518 2-353 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 3E-19 1E-23 166.2 41.8 317 18-343 2-349 (359)
16 2xm6_A Protein corresponding t 99.9 5E-18 1.7E-22 164.6 49.5 368 37-465 25-433 (490)
17 2ooe_A Cleavage stimulation fa 99.9 3.8E-18 1.3E-22 167.1 44.6 428 6-464 2-492 (530)
18 1xi4_A Clathrin heavy chain; a 99.9 4.4E-17 1.5E-21 165.2 49.7 383 17-455 983-1375(1630)
19 3hym_B Cell division cycle pro 99.9 2.1E-19 7.2E-24 165.1 30.7 285 228-520 21-320 (330)
20 2ooe_A Cleavage stimulation fa 99.9 1.1E-17 3.8E-22 163.8 42.8 398 1-428 30-491 (530)
21 3hym_B Cell division cycle pro 99.9 8.2E-19 2.8E-23 161.1 32.5 290 158-486 21-321 (330)
22 1xi4_A Clathrin heavy chain; a 99.9 1.9E-16 6.5E-21 160.7 50.1 410 53-519 984-1415(1630)
23 1fch_A Peroxisomal targeting s 99.9 1.4E-19 4.9E-24 169.0 25.4 307 203-532 34-357 (368)
24 4g1t_A Interferon-induced prot 99.8 6.9E-17 2.4E-21 156.2 39.8 381 124-536 51-461 (472)
25 1fch_A Peroxisomal targeting s 99.8 2.5E-18 8.7E-23 160.5 27.5 310 32-358 14-354 (368)
26 1b89_A Protein (clathrin heavy 99.8 8.7E-19 3E-23 159.2 23.0 393 31-496 15-414 (449)
27 4eqf_A PEX5-related protein; a 99.8 1.3E-18 4.3E-23 162.3 24.4 274 229-530 65-352 (365)
28 1b89_A Protein (clathrin heavy 99.8 1.4E-19 4.7E-24 164.4 14.4 375 100-528 14-411 (449)
29 4eqf_A PEX5-related protein; a 99.8 1.1E-17 3.6E-22 156.1 26.1 263 56-324 67-352 (365)
30 3cv0_A Peroxisome targeting si 99.8 5.1E-18 1.7E-22 155.6 23.5 278 230-532 22-313 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 2.2E-17 7.5E-22 147.4 26.8 272 240-528 10-288 (291)
32 3mkr_A Coatomer subunit epsilo 99.8 1.3E-17 4.3E-22 148.9 25.1 241 234-492 39-287 (291)
33 3cv0_A Peroxisome targeting si 99.8 6.1E-17 2.1E-21 148.4 28.4 265 18-288 20-310 (327)
34 4g1t_A Interferon-induced prot 99.8 3.3E-16 1.1E-20 151.4 34.7 386 53-471 50-466 (472)
35 3e4b_A ALGK; tetratricopeptide 99.7 9.7E-16 3.3E-20 146.0 25.3 217 301-532 178-419 (452)
36 3uq3_A Heat shock protein STI1 99.7 1.1E-15 3.6E-20 134.8 23.9 219 267-496 8-233 (258)
37 2pl2_A Hypothetical conserved 99.7 6.7E-16 2.3E-20 131.6 20.9 193 333-532 4-212 (217)
38 3spa_A Mtrpol, DNA-directed RN 99.7 2.9E-17 9.9E-22 161.4 13.3 163 54-221 127-308 (1134)
39 3e4b_A ALGK; tetratricopeptide 99.7 7.8E-15 2.7E-19 139.8 27.7 379 25-464 9-421 (452)
40 3spa_A Mtrpol, DNA-directed RN 99.7 3.1E-17 1.1E-21 161.2 10.6 150 19-173 127-286 (1134)
41 3u4t_A TPR repeat-containing p 99.7 4E-15 1.4E-19 132.2 22.8 224 306-535 10-251 (272)
42 1ouv_A Conserved hypothetical 99.7 3.7E-14 1.3E-18 126.0 29.0 229 263-536 5-253 (273)
43 2pl2_A Hypothetical conserved 99.7 5.2E-15 1.8E-19 126.1 22.1 199 16-220 2-211 (217)
44 3uq3_A Heat shock protein STI1 99.7 1.1E-14 3.9E-19 128.1 24.2 225 19-257 5-235 (258)
45 4e6h_A MRNA 3'-END-processing 99.7 4.3E-12 1.5E-16 124.9 42.6 432 6-465 55-571 (679)
46 4e6h_A MRNA 3'-END-processing 99.7 4.1E-12 1.4E-16 125.0 42.1 440 36-502 49-574 (679)
47 2h6f_A Protein farnesyltransfe 99.7 1E-14 3.5E-19 134.5 22.0 225 302-534 100-348 (382)
48 3u4t_A TPR repeat-containing p 99.7 1.8E-14 6.2E-19 128.0 23.1 247 231-515 5-265 (272)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.3E-14 8E-19 127.5 22.0 245 137-387 18-268 (275)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.2E-14 7.7E-19 127.6 20.2 218 301-528 45-269 (275)
51 3ulq_A Response regulator aspa 99.6 4.7E-14 1.6E-18 132.1 23.3 225 307-533 111-367 (383)
52 1ouv_A Conserved hypothetical 99.6 1.6E-12 5.5E-17 115.3 31.6 223 18-258 5-251 (273)
53 4a1s_A PINS, partner of inscut 99.6 3E-14 1E-18 134.9 20.4 277 232-533 51-371 (411)
54 2h6f_A Protein farnesyltransfe 99.6 3.2E-13 1.1E-17 124.5 26.3 248 19-274 97-363 (382)
55 3sf4_A G-protein-signaling mod 99.6 2.4E-14 8.4E-19 135.3 19.0 300 226-525 6-367 (406)
56 3ro2_A PINS homolog, G-protein 99.6 4.8E-14 1.6E-18 129.5 20.1 280 231-535 7-333 (338)
57 2vq2_A PILW, putative fimbrial 99.6 8.8E-13 3E-17 113.2 26.6 204 17-223 6-211 (225)
58 2ho1_A Type 4 fimbrial biogene 99.6 7.9E-13 2.7E-17 115.9 26.4 199 56-258 39-238 (252)
59 3sf4_A G-protein-signaling mod 99.6 6.8E-14 2.3E-18 132.3 20.6 304 157-488 7-365 (406)
60 2ho1_A Type 4 fimbrial biogene 99.6 6.7E-13 2.3E-17 116.3 25.3 200 90-293 38-238 (252)
61 2vq2_A PILW, putative fimbrial 99.6 1.2E-12 4.2E-17 112.4 26.4 202 53-257 7-210 (225)
62 2q7f_A YRRB protein; TPR, prot 99.6 1.5E-13 5.2E-18 119.7 20.3 200 19-223 23-222 (243)
63 2q7f_A YRRB protein; TPR, prot 99.6 2.8E-13 9.6E-18 118.0 20.8 201 53-258 22-222 (243)
64 3vtx_A MAMA; tetratricopeptide 99.6 4.9E-13 1.7E-17 110.8 20.9 162 368-535 8-171 (184)
65 4abn_A Tetratricopeptide repea 99.6 1.2E-13 4.1E-18 132.5 17.7 193 333-531 101-318 (474)
66 4a1s_A PINS, partner of inscut 99.6 1.8E-13 6.2E-18 129.6 18.7 95 161-256 50-153 (411)
67 2ond_A Cleavage stimulation fa 99.5 1.5E-11 5.1E-16 111.0 28.8 211 281-495 33-266 (308)
68 3q15_A PSP28, response regulat 99.5 1.1E-12 3.8E-17 122.4 22.0 223 308-533 110-364 (378)
69 2ond_A Cleavage stimulation fa 99.5 1.5E-11 5.2E-16 111.0 28.7 217 246-465 33-271 (308)
70 3vtx_A MAMA; tetratricopeptide 99.5 1.6E-12 5.4E-17 107.7 20.4 163 299-465 5-171 (184)
71 3ro2_A PINS homolog, G-protein 99.5 6.9E-13 2.4E-17 121.7 19.6 95 402-496 225-329 (338)
72 3ulq_A Response regulator aspa 99.5 4.5E-12 1.6E-16 118.6 25.3 223 271-496 110-365 (383)
73 3nf1_A KLC 1, kinesin light ch 99.5 1.4E-12 4.8E-17 118.2 20.5 235 299-534 27-307 (311)
74 4gyw_A UDP-N-acetylglucosamine 99.5 2.5E-12 8.5E-17 128.2 20.9 159 368-533 12-173 (723)
75 4abn_A Tetratricopeptide repea 99.5 7.1E-12 2.4E-16 120.2 21.5 211 35-251 84-314 (474)
76 3nf1_A KLC 1, kinesin light ch 99.4 1.9E-12 6.6E-17 117.3 15.1 170 18-187 26-223 (311)
77 3as5_A MAMA; tetratricopeptide 99.4 1.1E-11 3.7E-16 102.7 18.2 158 372-535 15-174 (186)
78 4i17_A Hypothetical protein; T 99.4 2E-11 6.7E-16 105.0 19.9 190 333-536 6-211 (228)
79 1hz4_A MALT regulatory protein 99.4 1.2E-09 4E-14 101.8 30.6 269 168-464 23-322 (373)
80 1hz4_A MALT regulatory protein 99.4 5.4E-10 1.8E-14 104.0 27.7 234 22-255 17-279 (373)
81 3edt_B KLC 2, kinesin light ch 99.4 2.9E-11 9.8E-16 107.8 18.2 199 335-534 44-281 (283)
82 3q15_A PSP28, response regulat 99.3 3.8E-10 1.3E-14 105.2 25.0 307 16-326 7-363 (378)
83 4i17_A Hypothetical protein; T 99.3 3.5E-10 1.2E-14 97.1 21.7 207 263-514 6-223 (228)
84 1qqe_A Vesicular transport pro 99.3 2.6E-11 8.9E-16 108.4 14.9 94 247-361 3-104 (292)
85 3qky_A Outer membrane assembly 99.3 1.5E-10 5.1E-15 101.8 19.5 164 372-536 22-226 (261)
86 3as5_A MAMA; tetratricopeptide 99.3 3E-10 1E-14 93.9 20.4 166 19-188 8-173 (186)
87 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.3E-10 8E-15 97.8 19.4 90 448-537 109-216 (225)
88 4gyw_A UDP-N-acetylglucosamine 99.3 2.3E-10 8E-15 114.1 21.2 167 17-187 7-173 (723)
89 2r5s_A Uncharacterized protein 99.3 5.9E-11 2E-15 97.2 13.9 162 367-533 8-172 (176)
90 3qky_A Outer membrane assembly 99.3 1.9E-10 6.5E-15 101.1 17.6 153 372-526 59-253 (261)
91 3qou_A Protein YBBN; thioredox 99.3 1.3E-10 4.6E-15 103.3 16.5 160 369-533 121-283 (287)
92 4ga2_A E3 SUMO-protein ligase 99.2 3.6E-11 1.2E-15 95.3 9.5 142 372-520 4-149 (150)
93 2uy1_A Cleavage stimulation fa 99.2 2.9E-08 9.8E-13 95.0 31.0 369 21-428 17-412 (493)
94 3urz_A Uncharacterized protein 99.2 4.3E-10 1.5E-14 94.8 16.1 124 406-535 60-187 (208)
95 1qqe_A Vesicular transport pro 99.2 4.4E-10 1.5E-14 100.4 16.3 153 341-495 44-224 (292)
96 2fo7_A Synthetic consensus TPR 99.2 1.3E-09 4.4E-14 84.6 16.7 129 402-535 3-133 (136)
97 2uy1_A Cleavage stimulation fa 99.2 1.1E-07 3.8E-12 91.0 33.1 369 103-533 28-412 (493)
98 3mv2_B Coatomer subunit epsilo 99.2 1.2E-08 4.2E-13 89.0 24.0 179 143-328 85-282 (310)
99 3mv2_B Coatomer subunit epsilo 99.2 1.5E-08 5.1E-13 88.4 24.4 28 399-428 254-281 (310)
100 3edt_B KLC 2, kinesin light ch 99.2 3.2E-10 1.1E-14 100.9 14.6 227 31-258 13-281 (283)
101 2pzi_A Probable serine/threoni 99.2 1.8E-10 6.2E-15 115.5 13.0 151 310-465 402-564 (681)
102 3rjv_A Putative SEL1 repeat pr 99.2 3.3E-09 1.1E-13 89.5 18.6 160 368-536 21-199 (212)
103 2vsy_A XCC0866; transferase, g 99.1 1.2E-09 4.3E-14 107.7 17.7 143 348-495 3-153 (568)
104 2ifu_A Gamma-SNAP; membrane fu 99.1 1.5E-09 5.2E-14 97.7 15.1 198 277-501 4-226 (307)
105 4ga2_A E3 SUMO-protein ligase 99.1 6E-10 2.1E-14 88.2 10.8 140 341-485 4-149 (150)
106 3urz_A Uncharacterized protein 99.1 6.2E-09 2.1E-13 87.6 17.6 166 18-188 3-186 (208)
107 3dra_A Protein farnesyltransfe 99.1 6E-08 2.1E-12 85.6 24.3 151 379-533 124-286 (306)
108 2yhc_A BAMD, UPF0169 lipoprote 99.1 7.9E-09 2.7E-13 88.3 18.0 184 299-501 4-215 (225)
109 2fo7_A Synthetic consensus TPR 99.1 1.2E-08 4.2E-13 78.9 17.4 129 21-152 3-131 (136)
110 2pzi_A Probable serine/threoni 99.1 1.1E-09 3.9E-14 109.7 14.2 173 345-524 402-587 (681)
111 2ifu_A Gamma-SNAP; membrane fu 99.1 1.3E-08 4.6E-13 91.5 19.1 221 242-491 4-253 (307)
112 3gyz_A Chaperone protein IPGC; 99.0 2.9E-09 9.9E-14 83.7 11.5 95 399-496 35-130 (151)
113 3rjv_A Putative SEL1 repeat pr 99.0 1.1E-07 3.7E-12 80.2 21.8 175 2-189 5-198 (212)
114 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.2E-08 4.1E-13 86.4 16.0 123 370-497 11-148 (213)
115 3qou_A Protein YBBN; thioredox 99.0 1.8E-08 6.2E-13 89.5 17.5 161 298-462 116-282 (287)
116 4gco_A Protein STI-1; structur 99.0 6.6E-09 2.3E-13 79.2 12.5 109 400-514 13-124 (126)
117 2qfc_A PLCR protein; TPR, HTH, 99.0 4.8E-08 1.6E-12 87.2 19.7 161 372-532 82-264 (293)
118 4gco_A Protein STI-1; structur 99.0 7.1E-09 2.4E-13 79.0 11.6 102 431-536 8-112 (126)
119 1a17_A Serine/threonine protei 99.0 2.4E-08 8.2E-13 80.6 15.4 129 400-533 13-145 (166)
120 2r5s_A Uncharacterized protein 99.0 8.5E-09 2.9E-13 84.2 12.7 161 22-186 9-171 (176)
121 3dra_A Protein farnesyltransfe 99.0 5.6E-07 1.9E-11 79.5 25.0 173 32-209 46-235 (306)
122 3u3w_A Transcriptional activat 99.0 2.3E-07 7.9E-12 82.8 22.9 162 372-533 82-265 (293)
123 1p5q_A FKBP52, FK506-binding p 98.9 1.8E-08 6.1E-13 91.7 14.4 129 399-533 146-293 (336)
124 4f3v_A ESX-1 secretion system 98.9 6.1E-08 2.1E-12 83.4 16.2 181 311-496 18-234 (282)
125 2lni_A Stress-induced-phosphop 98.9 6.4E-08 2.2E-12 74.6 14.8 118 397-520 13-133 (133)
126 3gyz_A Chaperone protein IPGC; 98.9 4.5E-09 1.5E-13 82.6 7.8 94 437-534 38-133 (151)
127 3u3w_A Transcriptional activat 98.9 6.7E-07 2.3E-11 79.7 23.1 156 341-496 82-263 (293)
128 2vgx_A Chaperone SYCD; alterna 98.9 1.7E-08 5.9E-13 79.4 11.0 111 387-501 9-121 (148)
129 3gw4_A Uncharacterized protein 98.9 2.9E-08 9.8E-13 83.2 12.8 157 376-533 3-175 (203)
130 2vsy_A XCC0866; transferase, g 98.9 8.6E-08 2.9E-12 94.5 18.1 154 32-189 2-158 (568)
131 3q7a_A Farnesyltransferase alp 98.9 1.3E-06 4.5E-11 77.9 23.5 150 380-533 140-330 (349)
132 2vgx_A Chaperone SYCD; alterna 98.8 1.2E-08 4E-13 80.4 9.3 109 422-536 9-120 (148)
133 2vyi_A SGTA protein; chaperone 98.8 7.7E-08 2.6E-12 73.8 13.6 120 398-522 10-131 (131)
134 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.8E-07 9.5E-12 77.8 18.0 128 337-465 9-151 (213)
135 1a17_A Serine/threonine protei 98.8 1.4E-07 4.6E-12 76.1 15.1 125 370-496 18-143 (166)
136 2e2e_A Formate-dependent nitri 98.8 3.3E-08 1.1E-12 80.8 11.4 123 375-501 20-147 (177)
137 2fbn_A 70 kDa peptidylprolyl i 98.8 1.2E-08 4.2E-13 85.1 8.7 156 376-536 15-188 (198)
138 4gcn_A Protein STI-1; structur 98.8 2.7E-08 9.2E-13 75.9 9.7 94 400-495 8-108 (127)
139 1na0_A Designed protein CTPR3; 98.8 2.7E-07 9.4E-12 70.0 14.8 115 400-519 9-125 (125)
140 2qfc_A PLCR protein; TPR, HTH, 98.8 1.3E-06 4.5E-11 77.8 21.4 125 372-496 122-263 (293)
141 2e2e_A Formate-dependent nitri 98.8 1.2E-07 4.1E-12 77.4 12.9 118 413-535 23-145 (177)
142 1hxi_A PEX5, peroxisome target 98.7 9.3E-08 3.2E-12 72.2 10.9 94 439-536 21-116 (121)
143 3q7a_A Farnesyltransferase alp 98.7 7.4E-06 2.5E-10 73.1 24.2 183 21-208 56-256 (349)
144 2c2l_A CHIP, carboxy terminus 98.7 1.3E-07 4.5E-12 83.6 13.1 190 333-534 3-199 (281)
145 3upv_A Heat shock protein STI1 98.7 2.7E-07 9.4E-12 70.3 13.3 93 400-496 4-98 (126)
146 3gw4_A Uncharacterized protein 98.7 9.1E-08 3.1E-12 80.1 11.3 98 399-496 65-173 (203)
147 3sz7_A HSC70 cochaperone (SGT) 98.7 2.8E-07 9.7E-12 74.0 13.2 99 399-501 10-111 (164)
148 3upv_A Heat shock protein STI1 98.7 2E-07 6.8E-12 71.1 11.7 97 435-535 4-102 (126)
149 2xcb_A PCRH, regulatory protei 98.7 1.3E-07 4.5E-12 73.8 10.8 95 399-496 17-112 (142)
150 2xcb_A PCRH, regulatory protei 98.7 1.4E-07 4.7E-12 73.7 10.7 102 431-536 13-117 (142)
151 2c2l_A CHIP, carboxy terminus 98.6 1.7E-07 5.6E-12 82.9 11.1 49 413-463 148-198 (281)
152 2vyi_A SGTA protein; chaperone 98.6 8.2E-07 2.8E-11 67.9 13.9 113 370-486 17-130 (131)
153 3sz7_A HSC70 cochaperone (SGT) 98.6 2.9E-07 1E-11 73.9 11.7 100 434-537 10-111 (164)
154 4gcn_A Protein STI-1; structur 98.6 3.6E-07 1.2E-11 69.6 11.5 96 369-465 12-113 (127)
155 1elw_A TPR1-domain of HOP; HOP 98.6 1.1E-06 3.6E-11 65.9 14.0 110 400-514 4-115 (118)
156 2kck_A TPR repeat; tetratricop 98.6 2.8E-07 9.5E-12 68.4 10.6 99 437-536 8-108 (112)
157 2lni_A Stress-induced-phosphop 98.6 1.1E-06 3.9E-11 67.4 14.4 119 16-137 13-131 (133)
158 1na0_A Designed protein CTPR3; 98.6 1.5E-06 5.1E-11 65.8 14.8 111 19-132 9-119 (125)
159 3q49_B STIP1 homology and U bo 98.6 6E-07 2.1E-11 69.5 12.7 116 397-516 6-127 (137)
160 1p5q_A FKBP52, FK506-binding p 98.6 5.6E-07 1.9E-11 81.8 14.1 131 18-150 146-291 (336)
161 4f3v_A ESX-1 secretion system 98.6 1.2E-06 4E-11 75.5 14.7 91 374-465 144-238 (282)
162 2dba_A Smooth muscle cell asso 98.6 1.2E-06 4.1E-11 68.8 14.0 111 398-514 26-142 (148)
163 1hxi_A PEX5, peroxisome target 98.6 7.4E-07 2.5E-11 67.1 11.6 93 370-465 22-115 (121)
164 3ro3_A PINS homolog, G-protein 98.6 4.9E-07 1.7E-11 72.3 11.4 135 400-534 9-158 (164)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 5E-07 1.7E-11 86.0 12.8 127 400-531 268-412 (457)
166 3q49_B STIP1 homology and U bo 98.6 9.6E-07 3.3E-11 68.3 12.4 95 368-465 12-107 (137)
167 3dss_A Geranylgeranyl transfer 98.6 0.00012 4.3E-09 64.9 27.0 191 315-514 90-318 (331)
168 2kck_A TPR repeat; tetratricop 98.6 1.4E-06 4.8E-11 64.4 12.7 95 401-496 7-103 (112)
169 2xev_A YBGF; tetratricopeptide 98.5 1.4E-06 4.7E-11 66.6 12.6 97 403-501 5-108 (129)
170 4b4t_Q 26S proteasome regulato 98.5 6.8E-06 2.3E-10 78.0 18.6 191 306-496 11-242 (434)
171 1elw_A TPR1-domain of HOP; HOP 98.5 9E-06 3.1E-10 60.6 15.5 99 18-118 3-101 (118)
172 2hr2_A Hypothetical protein; a 98.5 1.5E-06 5E-11 67.4 10.7 60 402-463 13-85 (159)
173 2if4_A ATFKBP42; FKBP-like, al 98.5 4.5E-07 1.6E-11 82.4 9.2 129 403-536 182-330 (338)
174 2dba_A Smooth muscle cell asso 98.5 3.8E-06 1.3E-10 65.9 13.5 101 434-536 27-130 (148)
175 3k9i_A BH0479 protein; putativ 98.5 4.4E-07 1.5E-11 68.0 7.5 86 378-465 3-91 (117)
176 2xev_A YBGF; tetratricopeptide 98.5 4.4E-06 1.5E-10 63.7 13.4 95 368-465 5-106 (129)
177 3k9i_A BH0479 protein; putativ 98.5 2.5E-07 8.4E-12 69.4 5.9 88 412-501 2-93 (117)
178 2fbn_A 70 kDa peptidylprolyl i 98.4 3E-06 1E-10 70.5 13.0 121 372-496 45-183 (198)
179 1wao_1 Serine/threonine protei 98.4 6.8E-07 2.3E-11 85.4 10.2 115 409-529 15-134 (477)
180 1wao_1 Serine/threonine protei 98.4 2E-06 6.9E-11 82.1 13.5 117 374-494 15-134 (477)
181 1elr_A TPR2A-domain of HOP; HO 98.4 3.4E-06 1.2E-10 64.4 12.2 114 400-516 4-123 (131)
182 3rkv_A Putative peptidylprolyl 98.4 1.9E-06 6.3E-11 69.0 10.9 118 399-520 10-147 (162)
183 1elr_A TPR2A-domain of HOP; HO 98.4 1.8E-06 6.2E-11 66.0 10.4 96 369-465 8-109 (131)
184 3rkv_A Putative peptidylprolyl 98.4 3E-06 1E-10 67.8 12.0 96 368-465 14-127 (162)
185 1ihg_A Cyclophilin 40; ppiase 98.4 4.2E-06 1.5E-10 76.9 13.2 122 402-527 225-363 (370)
186 3ro3_A PINS homolog, G-protein 98.4 2.5E-06 8.5E-11 68.1 10.2 125 372-496 16-155 (164)
187 1klx_A Cysteine rich protein B 98.4 1.4E-05 4.9E-10 61.6 13.9 111 414-535 9-127 (138)
188 3dss_A Geranylgeranyl transfer 98.4 0.00089 3.1E-08 59.5 27.0 128 37-168 48-188 (331)
189 3n71_A Histone lysine methyltr 98.3 4.3E-06 1.5E-10 79.2 12.7 127 409-535 318-465 (490)
190 2hr2_A Hypothetical protein; a 98.3 6.5E-06 2.2E-10 63.8 11.4 95 371-465 17-132 (159)
191 4b4t_Q 26S proteasome regulato 98.3 2.6E-05 8.9E-10 73.9 17.9 130 403-532 58-202 (434)
192 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 7.9E-06 2.7E-10 77.7 13.1 93 400-496 317-412 (457)
193 2l6j_A TPR repeat-containing p 98.3 8.6E-07 3E-11 65.6 5.2 96 434-531 3-104 (111)
194 1ihg_A Cyclophilin 40; ppiase 98.3 8.1E-06 2.8E-10 75.0 12.7 90 398-491 271-362 (370)
195 1dce_A Protein (RAB geranylger 98.2 2.4E-05 8.1E-10 76.1 15.8 137 381-523 89-244 (567)
196 1dce_A Protein (RAB geranylger 98.1 0.00013 4.6E-09 70.9 18.3 151 379-536 43-223 (567)
197 3n71_A Histone lysine methyltr 98.1 2.2E-05 7.6E-10 74.4 11.9 123 375-497 319-462 (490)
198 1klx_A Cysteine rich protein B 98.1 9E-05 3.1E-09 57.0 13.4 111 379-500 9-127 (138)
199 1zu2_A Mitochondrial import re 98.1 1.8E-05 6.3E-10 61.1 9.2 87 376-465 13-121 (158)
200 2l6j_A TPR repeat-containing p 98.1 3.4E-06 1.1E-10 62.3 4.9 97 399-497 3-105 (111)
201 2kat_A Uncharacterized protein 98.1 1.6E-05 5.4E-10 59.1 8.2 78 384-464 4-82 (115)
202 2if4_A ATFKBP42; FKBP-like, al 98.0 2.3E-05 8E-10 71.1 10.7 96 436-536 180-295 (338)
203 1zu2_A Mitochondrial import re 98.0 1.1E-05 3.7E-10 62.4 6.8 82 411-495 13-116 (158)
204 2kat_A Uncharacterized protein 98.0 3.2E-05 1.1E-09 57.4 8.7 101 417-520 2-104 (115)
205 1na3_A Designed protein CTPR2; 98.0 7.1E-05 2.4E-09 52.6 9.8 80 436-518 10-90 (91)
206 3ma5_A Tetratricopeptide repea 97.9 2.6E-05 8.9E-10 56.2 6.9 65 398-464 5-70 (100)
207 1na3_A Designed protein CTPR2; 97.8 0.00013 4.4E-09 51.2 9.4 82 399-483 8-90 (91)
208 3ma5_A Tetratricopeptide repea 97.8 8.1E-05 2.8E-09 53.5 7.6 62 434-496 6-67 (100)
209 3qww_A SET and MYND domain-con 97.5 0.00074 2.5E-08 62.9 11.1 84 412-495 310-407 (433)
210 2kc7_A BFR218_protein; tetratr 97.4 0.00028 9.6E-09 50.4 6.3 56 408-465 8-65 (99)
211 1pc2_A Mitochondria fission pr 97.4 0.00066 2.3E-08 51.8 8.4 85 414-501 12-103 (152)
212 3ly7_A Transcriptional activat 97.4 0.002 7E-08 57.4 12.5 59 434-495 276-335 (372)
213 3bee_A Putative YFRE protein; 97.4 0.0011 3.6E-08 46.5 8.4 62 433-497 4-70 (93)
214 3qww_A SET and MYND domain-con 97.3 0.00066 2.2E-08 63.2 8.7 87 378-464 311-411 (433)
215 3qwp_A SET and MYND domain-con 97.3 0.0023 7.7E-08 59.8 12.3 91 406-496 293-397 (429)
216 2kc7_A BFR218_protein; tetratr 97.3 0.00058 2E-08 48.7 6.4 83 371-464 6-90 (99)
217 3bee_A Putative YFRE protein; 97.3 0.0025 8.7E-08 44.5 9.4 67 397-465 3-73 (93)
218 3ly7_A Transcriptional activat 97.2 0.017 6E-07 51.5 16.3 154 296-477 191-349 (372)
219 1pc2_A Mitochondria fission pr 97.2 0.0048 1.6E-07 47.1 10.7 84 380-465 13-101 (152)
220 3qwp_A SET and MYND domain-con 97.2 0.0021 7.3E-08 59.9 10.6 91 374-464 296-400 (429)
221 3u64_A Protein TP_0956; tetrat 97.1 0.12 4.1E-06 44.2 20.2 108 416-532 179-296 (301)
222 1nzn_A CGI-135 protein, fissio 96.9 0.011 3.7E-07 43.3 10.1 89 410-501 11-106 (126)
223 3mkq_A Coatomer beta'-subunit; 96.9 0.086 2.9E-06 54.2 20.9 76 338-427 633-708 (814)
224 3mkq_A Coatomer beta'-subunit; 96.9 0.092 3.2E-06 54.0 20.8 164 170-390 610-774 (814)
225 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0046 1.6E-07 44.5 7.7 69 433-501 3-78 (104)
226 3mkq_B Coatomer subunit alpha; 96.7 0.034 1.2E-06 43.6 11.6 132 370-531 10-141 (177)
227 3u64_A Protein TP_0956; tetrat 96.6 0.0094 3.2E-07 50.9 8.9 87 450-537 178-272 (301)
228 3lvg_A Clathrin heavy chain 1; 96.5 2.8E-06 9.4E-11 76.9 -13.7 245 53-319 53-324 (624)
229 1nzn_A CGI-135 protein, fissio 96.4 0.047 1.6E-06 40.0 10.5 61 473-533 38-102 (126)
230 2v5f_A Prolyl 4-hydroxylase su 96.4 0.038 1.3E-06 39.5 10.2 67 17-83 3-75 (104)
231 4h7y_A Dual specificity protei 96.4 0.0083 2.8E-07 45.0 6.4 98 397-496 10-120 (161)
232 3mkq_B Coatomer subunit alpha; 96.4 0.26 8.8E-06 38.7 17.5 99 310-425 16-114 (177)
233 1qsa_A Protein (soluble lytic 96.2 1 3.4E-05 44.0 25.0 78 416-497 268-346 (618)
234 3ffl_A Anaphase-promoting comp 96.1 0.035 1.2E-06 42.7 8.8 131 370-515 25-165 (167)
235 3lvg_A Clathrin heavy chain 1; 95.7 1.9E-05 6.6E-10 71.6 -12.6 244 19-284 54-324 (624)
236 4h7y_A Dual specificity protei 95.5 0.17 5.8E-06 38.1 9.9 102 16-119 10-124 (161)
237 1wy6_A Hypothetical protein ST 95.3 0.57 1.9E-05 34.5 13.0 62 197-259 94-155 (172)
238 3o48_A Mitochondria fission 1 95.3 0.21 7E-06 36.8 9.6 72 430-501 35-110 (134)
239 3ffl_A Anaphase-promoting comp 95.2 0.057 2E-06 41.5 6.7 117 406-535 26-152 (167)
240 4b4t_P 26S proteasome regulato 95.1 2.2 7.4E-05 39.9 22.4 95 370-464 142-247 (445)
241 1y8m_A FIS1; mitochondria, unk 95.0 0.47 1.6E-05 35.4 10.9 70 432-501 36-109 (144)
242 4ady_A RPN2, 26S proteasome re 94.6 4.7 0.00016 41.2 37.2 151 377-533 502-657 (963)
243 1wy6_A Hypothetical protein ST 94.4 1.1 3.7E-05 33.0 15.0 138 310-465 18-155 (172)
244 3o48_A Mitochondria fission 1 94.2 0.85 2.9E-05 33.6 10.5 68 396-465 36-108 (134)
245 4gns_B Protein CSD3, chitin bi 93.9 0.42 1.4E-05 47.5 11.2 50 446-497 348-398 (754)
246 4gns_B Protein CSD3, chitin bi 93.6 1 3.5E-05 44.9 13.3 128 233-361 252-398 (754)
247 1y8m_A FIS1; mitochondria, unk 93.3 1.9 6.6E-05 32.2 12.6 70 396-465 35-107 (144)
248 4ady_A RPN2, 26S proteasome re 91.8 13 0.00043 38.2 37.9 256 238-501 383-660 (963)
249 2ff4_A Probable regulatory pro 91.7 1.5 5.2E-05 40.1 11.2 74 56-130 173-251 (388)
250 2ff4_A Probable regulatory pro 91.5 0.94 3.2E-05 41.5 9.5 67 371-438 177-248 (388)
251 4fhn_B Nucleoporin NUP120; pro 91.3 5.4 0.00018 42.6 16.3 139 304-449 817-985 (1139)
252 3txn_A 26S proteasome regulato 90.9 4.7 0.00016 36.7 13.1 131 403-533 22-167 (394)
253 1v54_E Cytochrome C oxidase po 89.8 3.7 0.00013 28.4 9.8 49 69-117 25-73 (109)
254 4fhn_B Nucleoporin NUP120; pro 89.2 5.8 0.0002 42.4 14.4 145 370-522 817-988 (1139)
255 1v54_E Cytochrome C oxidase po 89.1 4.1 0.00014 28.2 8.8 70 27-97 17-87 (109)
256 4b4t_R RPN7, 26S proteasome re 88.1 2.2 7.7E-05 39.6 9.3 99 367-465 133-238 (429)
257 1zbp_A Hypothetical protein VP 87.3 5.4 0.00018 33.7 10.0 53 375-428 7-59 (273)
258 1zbp_A Hypothetical protein VP 87.0 2.7 9.2E-05 35.5 8.0 118 409-534 6-129 (273)
259 2y69_E Cytochrome C oxidase su 86.7 7.7 0.00026 28.5 9.8 62 69-131 68-129 (152)
260 2y69_E Cytochrome C oxidase su 85.4 8.8 0.0003 28.2 8.8 63 34-97 68-130 (152)
261 4a1g_A Mitotic checkpoint seri 84.5 3.5 0.00012 31.3 6.9 52 487-538 82-134 (152)
262 3esl_A Checkpoint serine/threo 83.9 7.6 0.00026 31.1 8.8 76 421-497 58-143 (202)
263 4b4t_P 26S proteasome regulato 83.0 30 0.001 32.2 22.7 96 402-497 139-245 (445)
264 2p58_C Putative type III secre 81.3 9.4 0.00032 26.3 7.1 50 410-465 50-99 (116)
265 4aez_C MAD3, mitotic spindle c 79.7 6.9 0.00023 31.9 7.3 44 452-495 131-175 (223)
266 2wpv_A GET4, UPF0363 protein Y 79.4 31 0.0011 30.1 17.5 112 232-358 36-158 (312)
267 3esl_A Checkpoint serine/threo 78.9 18 0.0006 29.0 9.3 53 413-465 92-145 (202)
268 2wvi_A Mitotic checkpoint seri 78.8 4.9 0.00017 31.0 6.0 42 454-495 79-121 (164)
269 4b4t_R RPN7, 26S proteasome re 78.1 25 0.00086 32.5 11.9 98 231-328 133-237 (429)
270 2uwj_G Type III export protein 76.0 17 0.00057 25.1 8.6 83 34-127 21-105 (115)
271 2p58_C Putative type III secre 75.2 18 0.0006 25.0 9.6 84 33-127 21-106 (116)
272 2wpv_A GET4, UPF0363 protein Y 73.2 47 0.0016 29.0 18.8 26 228-253 133-158 (312)
273 3lpz_A GET4 (YOR164C homolog); 72.8 50 0.0017 29.1 19.5 27 331-357 133-159 (336)
274 3ltm_A Alpha-REP4; protein eng 68.9 43 0.0015 26.9 16.2 61 398-463 124-184 (211)
275 3txn_A 26S proteasome regulato 68.3 70 0.0024 29.0 23.4 164 264-427 19-208 (394)
276 3eiq_C Programmed cell death p 67.4 69 0.0023 28.6 11.8 27 21-47 56-82 (358)
277 2uwj_G Type III export protein 66.5 29 0.00099 23.9 8.2 78 209-294 21-98 (115)
278 1qsa_A Protein (soluble lytic 64.9 1.1E+02 0.0037 29.9 38.3 116 173-292 228-347 (618)
279 1wdy_A 2-5A-dependent ribonucl 64.5 27 0.00093 29.6 8.5 56 24-87 7-65 (285)
280 2zu6_B Programmed cell death p 64.3 33 0.0011 29.8 8.6 63 162-225 169-233 (307)
281 3kae_A CDC27, possible protein 62.7 47 0.0016 25.7 7.9 26 511-536 214-239 (242)
282 3ltm_A Alpha-REP4; protein eng 60.4 64 0.0022 25.8 16.6 16 333-348 125-140 (211)
283 2wvi_A Mitotic checkpoint seri 58.1 62 0.0021 24.9 9.2 49 417-465 77-126 (164)
284 2d2s_A Exocyst complex compone 56.8 84 0.0029 26.0 9.4 24 24-47 23-46 (235)
285 1k1a_A B-cell lymphoma 3-encod 56.3 70 0.0024 26.1 9.4 86 26-115 13-102 (241)
286 3eiq_C Programmed cell death p 54.6 1.2E+02 0.004 27.1 12.4 26 338-363 221-246 (358)
287 3kae_A CDC27, possible protein 51.5 83 0.0028 24.4 21.5 121 309-441 12-153 (242)
288 3lpz_A GET4 (YOR164C homolog); 51.4 1.3E+02 0.0044 26.5 25.7 21 368-388 139-159 (336)
289 3ltj_A Alpharep-4; protein eng 49.6 94 0.0032 24.5 17.6 17 399-415 120-136 (201)
290 2qx5_A Nucleoporin NIC96; mRNA 49.2 2E+02 0.007 28.3 21.4 16 516-531 549-564 (661)
291 1wdy_A 2-5A-dependent ribonucl 48.6 61 0.0021 27.3 8.0 13 346-358 228-240 (285)
292 4b4t_S RPN3, 26S proteasome re 48.4 68 0.0023 30.3 8.2 61 436-496 232-296 (523)
293 4a1g_A Mitotic checkpoint seri 48.3 87 0.003 23.7 10.8 49 417-465 82-131 (152)
294 4b4t_S RPN3, 26S proteasome re 45.8 56 0.0019 30.8 7.3 66 400-465 231-300 (523)
295 3bu8_A Telomeric repeat-bindin 44.8 1.2E+02 0.0042 24.5 8.3 20 478-497 122-141 (235)
296 2ijq_A Hypothetical protein; s 44.2 1.1E+02 0.0036 23.5 7.9 52 31-82 44-103 (161)
297 1bpo_A Protein (clathrin); cla 42.5 2.1E+02 0.0073 26.5 13.3 141 378-531 342-482 (494)
298 3eu9_A Huntingtin-interacting 41.5 51 0.0017 26.9 6.2 15 29-43 16-30 (240)
299 4aez_C MAD3, mitotic spindle c 41.5 56 0.0019 26.7 5.8 49 417-465 131-180 (223)
300 4gq2_M Nucleoporin NUP120; bet 40.8 1.2E+02 0.0041 31.6 9.7 47 473-519 899-950 (950)
301 3kea_A K1L; tropism, ANK repea 39.9 1E+02 0.0034 26.3 7.9 6 66-71 40-45 (285)
302 4g8k_A 2-5A-dependent ribonucl 39.4 1.9E+02 0.0065 25.1 11.6 56 23-87 26-85 (337)
303 3pvs_A Replication-associated 39.1 2.4E+02 0.0081 26.1 12.7 55 101-155 267-326 (447)
304 2d2s_A Exocyst complex compone 38.3 1.7E+02 0.0058 24.2 9.7 87 96-185 25-117 (235)
305 2fe3_A Peroxide operon regulat 37.8 1E+02 0.0034 23.1 6.6 60 44-104 12-71 (145)
306 3kea_A K1L; tropism, ANK repea 37.4 1.4E+02 0.0048 25.3 8.4 145 25-185 34-184 (285)
307 2rpa_A Katanin P60 ATPase-cont 37.1 38 0.0013 22.2 3.4 23 509-531 16-38 (78)
308 4ets_A Ferric uptake regulatio 36.8 38 0.0013 26.1 4.1 70 36-106 14-86 (162)
309 2ion_A PDCD4, programmed cell 35.1 1.5E+02 0.005 22.5 8.8 64 22-86 12-77 (152)
310 3eyy_A Putative iron uptake re 35.0 86 0.003 23.5 5.8 52 12-65 12-63 (145)
311 3bqo_A Telomeric repeat-bindin 33.6 51 0.0017 26.2 4.2 21 477-497 124-144 (211)
312 3eu9_A Huntingtin-interacting 33.4 67 0.0023 26.1 5.6 17 96-112 46-62 (240)
313 2xig_A Ferric uptake regulatio 32.3 1.6E+02 0.0054 22.1 6.9 59 44-103 17-75 (150)
314 2f6m_A Suppressor protein STP2 32.0 95 0.0032 19.4 4.5 47 21-68 4-50 (65)
315 3ltj_A Alpharep-4; protein eng 30.7 1.9E+02 0.0066 22.6 17.9 92 332-428 88-179 (201)
316 3e3v_A Regulatory protein RECX 30.5 1.9E+02 0.0066 22.5 12.3 119 380-501 48-168 (177)
317 2xig_A Ferric uptake regulatio 29.9 1.8E+02 0.006 21.9 7.8 55 150-205 18-72 (150)
318 2crb_A Nuclear receptor bindin 29.8 83 0.0028 21.3 4.1 21 476-496 21-41 (97)
319 3hra_A Ankyrin repeat family p 29.2 1.2E+02 0.0039 23.8 6.2 14 214-227 158-171 (201)
320 1k1a_A B-cell lymphoma 3-encod 28.5 2.1E+02 0.0072 23.0 7.9 24 63-86 15-38 (241)
321 2nsz_A Programmed cell death p 28.3 1.7E+02 0.0059 21.3 10.1 65 22-87 10-76 (129)
322 1mzb_A Ferric uptake regulatio 27.8 1.8E+02 0.0062 21.3 6.8 59 290-349 9-68 (136)
323 1mzb_A Ferric uptake regulatio 27.7 1.5E+02 0.0051 21.8 6.0 58 45-103 9-67 (136)
324 3jxi_A Vanilloid receptor-rela 27.2 23 0.00078 29.7 1.6 26 28-53 11-36 (260)
325 2fu4_A Ferric uptake regulatio 27.2 1.3E+02 0.0044 19.5 6.5 58 290-348 8-66 (83)
326 2rfa_A Transient receptor pote 27.0 2E+02 0.007 23.0 7.5 86 132-222 126-222 (232)
327 3t8k_A Uncharacterized protein 26.9 2.2E+02 0.0077 22.1 9.4 91 29-123 13-108 (186)
328 1bpo_A Protein (clathrin); cla 26.6 3.9E+02 0.013 24.8 11.7 109 33-146 343-451 (494)
329 3eyy_A Putative iron uptake re 26.0 1.5E+02 0.005 22.2 5.7 14 246-259 34-47 (145)
330 2ijq_A Hypothetical protein; s 26.0 2.2E+02 0.0076 21.8 8.3 16 68-83 46-61 (161)
331 2w57_A Ferric uptake regulatio 25.9 1.6E+02 0.0055 22.1 5.9 59 44-103 7-66 (150)
332 2w57_A Ferric uptake regulatio 25.5 1.9E+02 0.0066 21.6 6.3 10 248-257 36-45 (150)
333 3hra_A Ankyrin repeat family p 25.5 1.1E+02 0.0038 23.9 5.4 155 28-193 11-172 (201)
334 3jxi_A Vanilloid receptor-rela 25.4 80 0.0027 26.3 4.7 20 100-119 13-32 (260)
335 2qx5_A Nucleoporin NIC96; mRNA 25.3 5E+02 0.017 25.6 21.0 42 129-171 157-198 (661)
336 2o03_A Probable zinc uptake re 25.3 80 0.0027 23.1 4.0 44 25-68 16-59 (131)
337 1ug3_A EIF4GI, eukaryotic prot 25.3 2.5E+02 0.0087 24.7 8.0 64 22-86 14-78 (339)
338 2fe3_A Peroxide operon regulat 25.2 2.1E+02 0.0073 21.2 8.1 56 150-206 13-68 (145)
339 2b7e_A PRE-mRNA processing pro 25.1 52 0.0018 20.1 2.3 29 281-309 3-31 (59)
340 2wl8_A Peroxisomal biogenesis 23.8 98 0.0033 22.5 4.0 23 520-542 90-112 (126)
341 2zu6_B Programmed cell death p 23.4 3.6E+02 0.012 23.3 12.3 74 303-377 170-245 (307)
342 3b7b_A Euchromatic histone-lys 23.4 2.1E+02 0.0073 23.0 7.0 23 26-52 15-37 (237)
343 1oai_A Nuclear RNA export fact 23.0 84 0.0029 19.2 3.0 22 449-470 34-55 (59)
344 4b4t_O 26S proteasome regulato 22.6 4.3E+02 0.015 23.9 9.8 20 407-426 83-102 (393)
345 2ynq_A ESSB; membrane protein, 22.5 1.6E+02 0.0054 22.5 5.0 81 412-497 20-100 (161)
346 4ets_A Ferric uptake regulatio 22.1 2.3E+02 0.008 21.6 6.2 58 291-349 25-84 (162)
347 3t5v_B Nuclear mRNA export pro 21.5 1.3E+02 0.0046 27.9 5.5 26 507-532 222-247 (455)
348 3pvs_A Replication-associated 21.5 4.8E+02 0.017 24.1 15.2 55 241-295 267-326 (447)
349 3myv_A SUSD superfamily protei 21.2 45 0.0015 31.1 2.4 31 504-534 189-219 (454)
350 2yru_A Steroid receptor RNA ac 21.1 2.3E+02 0.008 20.3 5.5 43 41-83 48-90 (118)
351 3aji_A 26S proteasome non-ATPa 20.8 2.4E+02 0.0083 22.5 6.7 19 26-44 10-28 (231)
352 3mwm_A ZUR, putative metal upt 20.7 71 0.0024 23.7 3.0 43 61-103 20-62 (139)
353 2o03_A Probable zinc uptake re 20.6 1.9E+02 0.0065 21.0 5.3 44 406-449 16-59 (131)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-42 Score=344.17 Aligned_cols=489 Identities=10% Similarity=-0.031 Sum_probs=298.5
Q ss_pred HHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 038401 30 LRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAI 109 (542)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 109 (542)
.+.|....+...+..+. .++...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|...|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34445555555544332 235666777777777777777777777776643 345566666777777777777777
Q ss_pred HHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHHCCC
Q 038401 110 SIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQ---------------GVKPDTVSYSTLLNLYVENHK 174 (542)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~l~~~~~~~g~ 174 (542)
.+|+.+... +++..+++.++.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 777766432 456667777777777777777777777642211 223456777777777777777
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHH--HH-HHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHH
Q 038401 175 FVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDAD--RL-FWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHL 251 (542)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 251 (542)
+++|.+.|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++
T Consensus 216 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 216 FDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 777777777776654 224445555554444333222211 11 34444443334444555566666677777777777
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038401 252 FRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVE 331 (542)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 331 (542)
|+.+.+. +++..+|+.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +
T Consensus 295 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 370 (597)
T 2xpi_A 295 LSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-P 370 (597)
T ss_dssp HHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c
Confidence 7766654 4566677777777777777777777777776554 2355566677777777777777777777776543 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 038401 332 IDPVLYQTMIVAYERVGLVAHAKRLLHELRQ---PNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIE 408 (542)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 408 (542)
.+..++..++..|.+.|++++|.++|+++.. .+...+..++.++.+.|++++|+++|+++.+.+ +.+..+|+.++.
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 4566667777777777777777777776543 233345666667777777777777777776653 345666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC---CCCch--HHHHH-HHHHHhc
Q 038401 409 LFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG---CVFSD--QVHFQ-MLSLYGA 482 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~--~~~~~-l~~~~~~ 482 (542)
+|.+.|++++|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ...+. ++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 7777777777777777776632 2256667777777777777777777777776651 11233 33333 6777777
Q ss_pred cCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 483 RKDFNMLESLFERL-DSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 483 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
.|++++|.+.++++ ...|. ....|..++.+|...|++++|.++++++.+..
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTN--DANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 77777777777774 33333 44667777777777777777777777776654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-41 Score=339.26 Aligned_cols=485 Identities=12% Similarity=0.036 Sum_probs=414.2
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 038401 17 PSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLI 96 (542)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 96 (542)
+++..|+.++..+.+.|++++|..+|+.+... .|+..++..++.+|.+.|++++|+.+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 67889999999999999999999999999864 568889999999999999999999999998653 67889999999
Q ss_pred HHHHhcCCHHHHHHHHHHhHhC---------------CCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHH
Q 038401 97 ELARKLSDYSKAISIFSRLKSS---------------GIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVS 161 (542)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 161 (542)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 9999999999999999954322 234468899999999999999999999999999874 225566
Q ss_pred HHHHHHHHHHCCChHHHHH--H-HHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 038401 162 YSTLLNLYVENHKFVEALS--V-FAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRV 238 (542)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 238 (542)
+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+.+.+. +++..++..++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 6666665544433332221 1 455555554555667777889999999999999999998866 5889999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038401 239 YGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRA 318 (542)
Q Consensus 239 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 318 (542)
|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999876 3477889999999999999999999999998663 55788999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 038401 319 AMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ---PNTIPRETAITILARAGRIEEATWVFRQAFDAG 395 (542)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (542)
.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.. .+...+..++.+|.+.|++++|.++|+++.+..
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999998864 45788999999999999999999999998764 355567788999999999999999999999874
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCc
Q 038401 396 EVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA----GYFPD--SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFS 469 (542)
Q Consensus 396 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 469 (542)
+.++.+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ |+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~ 548 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TN 548 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC
Confidence 467899999999999999999999999999875 56787 7899999999999999999999999999987 33
Q ss_pred hHHHHH-HHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHH
Q 038401 470 DQVHFQ-MLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIYE 516 (542)
Q Consensus 470 ~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 516 (542)
+...+. ++.+|.+.|++++|.+.++++ ..+|+ +...+..++.+|.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPN--EIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHh
Confidence 455555 999999999999999999995 55555 5678888887764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3e-28 Score=229.63 Aligned_cols=380 Identities=11% Similarity=0.040 Sum_probs=229.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCh
Q 038401 96 IELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKF 175 (542)
Q Consensus 96 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 175 (542)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344555666666666666655442 2234444555555555666666666665555442 33455566666666666666
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 038401 176 VEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLM 255 (542)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 255 (542)
++|++.|+++.+.. |.+..+|..+..++...|++++|...|+.+.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666655543 2234455555555555566666666555555542 223334444555555555555555555555
Q ss_pred HhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 038401 256 QRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPV 335 (542)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (542)
.... +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 5442 2234455555555555555555555555555442 2233444555555555555555555555554432 12333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 038401 336 LYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKK 415 (542)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 415 (542)
++.. +..++...|++++|.+.|+++++.. +.++.+|..++.++...|+
T Consensus 239 ~~~~-------------------------------l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 239 VHGN-------------------------------LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHH-------------------------------HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSC
T ss_pred HHHH-------------------------------HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC
Confidence 3333 4445555666666666666666653 3457788888888889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHH
Q 038401 416 YANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFE 494 (542)
Q Consensus 416 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~ 494 (542)
+++|++.|+++++.. +++..++..++..+.+.|++++|...++++.+.. |.+...+. ++.++.+.|++++|.+.++
T Consensus 287 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 287 VAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999888742 3467888888888889999999999999988765 23333333 8888999999999999998
Q ss_pred HH-hcCCCCCchhHHHHHHHHHHhhc
Q 038401 495 RL-DSDSNINKKELHHVVAGIYERAN 519 (542)
Q Consensus 495 ~~-~~~~~~~~~~~~~~l~~~~~~~g 519 (542)
++ ...|+ ...+|..++.++...|
T Consensus 364 ~a~~~~p~--~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 364 EAIRISPT--FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTCTT--CHHHHHHHHHHHHHTC
T ss_pred HHHhhCCC--CHHHHHhHHHHHHHcc
Confidence 85 33443 5577888888877665
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=7.8e-28 Score=226.78 Aligned_cols=378 Identities=12% Similarity=0.080 Sum_probs=227.9
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHH
Q 038401 63 CFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKE 142 (542)
Q Consensus 63 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 142 (542)
.+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 3444555555555555555442 1233444445555555566666665555555432 3445556666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038401 143 ARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRK 222 (542)
Q Consensus 143 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 222 (542)
|...|+++.... +.+..+|..+..++.+.|++++|.+.|+++.+.+ |.+...+..+...+...|++++|...|+++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666665542 2234456666666666666666666666666543 23344555666666666777777777777665
Q ss_pred CCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 038401 223 MGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITY 302 (542)
Q Consensus 223 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 302 (542)
.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 53 3345666777777777777777777777776654 3355667777777777777777777777776652 2246677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHH
Q 038401 303 STIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIE 382 (542)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 382 (542)
..+...+...|++++|...|+++.+.+ +.++.++..+..++.+.|++++|...+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~------------------------- 294 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY------------------------- 294 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHH-------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH-------------------------
Confidence 777777777888888888887777653 234555555555555444444444444
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 038401 383 EATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEM 461 (542)
Q Consensus 383 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 461 (542)
+++++. .+.+..++..++..+...|++++|+..++++++. .| +..++..++.+|.+.|++++|...|+++
T Consensus 295 ------~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 295 ------NTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp ------HHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred ------HHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444433 2345666666666677777777777777776653 23 3556666666777777777777777777
Q ss_pred HHcCCCCchHHHHH-HHHHHhccC
Q 038401 462 QEEGCVFSDQVHFQ-MLSLYGARK 484 (542)
Q Consensus 462 ~~~~~~~~~~~~~~-l~~~~~~~g 484 (542)
.+.. |.....+. ++.++...|
T Consensus 366 ~~~~--p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 366 IRIS--PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTC--TTCHHHHHHHHHHHHHTC
T ss_pred HhhC--CCCHHHHHhHHHHHHHcc
Confidence 6654 12222222 555555544
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2e-30 Score=247.55 Aligned_cols=204 Identities=16% Similarity=0.155 Sum_probs=144.3
Q ss_pred HHHHHHHhHhCCCCccH-hHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC---------hHH
Q 038401 108 AISIFSRLKSSGIVPDL-VAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHK---------FVE 177 (542)
Q Consensus 108 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---------~~~ 177 (542)
+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|++||..+|++||.+|++.+. .++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455555555554433 34677778888888888888888888888888888888888888776554 466
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 038401 178 ALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQR 257 (542)
Q Consensus 178 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 257 (542)
|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038401 258 KEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGK 311 (542)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 311 (542)
.|+.||..+|+.||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777776654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.3e-30 Score=247.13 Aligned_cols=201 Identities=14% Similarity=0.166 Sum_probs=109.6
Q ss_pred HHHHHHhCCCCCCHH-hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---------HHHHHH
Q 038401 41 LFDEMRQRGIAPDRY-TYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSD---------YSKAIS 110 (542)
Q Consensus 41 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~ 110 (542)
+.+.+.+.+..+.+. .++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|.+.+. ++.|.+
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~ 91 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD 91 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHH
Confidence 334444444433322 3455555555555555555555555555555555555555555544332 455556
Q ss_pred HHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCC
Q 038401 111 IFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNC 190 (542)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 190 (542)
+|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+
T Consensus 92 lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 038401 191 PLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGE 241 (542)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 241 (542)
.||..+|+.+|.+|++.|+.++|.+++++|.+.|..|+..||+.++..++.
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666665556666666655555544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-25 Score=218.31 Aligned_cols=442 Identities=10% Similarity=0.045 Sum_probs=231.9
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038401 18 SVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIE 97 (542)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 97 (542)
.+..+......+.+.|++++|+..|+.+.+.+ |+..+|..+..++...|++++|+..++++.+.++ .+...+..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHH
Confidence 34567788888999999999999999999875 6888999999999999999999999999988753 36778888999
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHH
Q 038401 98 LARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVE 177 (542)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 177 (542)
++...|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999998875 445555555555554444444444444333332222222211111100011111111
Q ss_pred HHHHHHHHHhcCC---------CCChhhHHHHHHHHhc---cCCHHHHHHHHHHHHH-----CCCCCChhHHHHHHHHHH
Q 038401 178 ALSVFAEMNEVNC---------PLDLTTCNIMIDVYGQ---LDMAKDADRLFWSMRK-----MGIDPSVVSYNTLLRVYG 240 (542)
Q Consensus 178 a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~ 240 (542)
...+...+..... +.+...+......+.. .|++++|...++.+.+ ..-.|+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------- 232 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL-------- 232 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH--------
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc--------
Confidence 1111111111000 1112222222222222 4555555555555544 2001100000
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038401 241 EAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAM 320 (542)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 320 (542)
.+.+...+..+...+...|++++|...++++.+.. |+...+..+...+...|++++|..
T Consensus 233 -------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 233 -------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGG
T ss_pred -------------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHH
Confidence 01123334444444444444444444444444432 223344444444444444444444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 038401 321 LFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQP---NTIPRETAITILARAGRIEEATWVFRQAFDAGEV 397 (542)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (542)
.++.+.+.. +.+...+..+...+...|++++|...++++... +...+..+...+...|++++|...++++.+.. +
T Consensus 292 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 369 (514)
T 2gw1_A 292 YFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-P 369 (514)
T ss_dssp HHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-c
Confidence 444444432 223344444444444555555555554444321 12223334444555566666666666665542 2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhc---cCcHHHHHHHHHHHHHcCCCCc
Q 038401 398 KDISVFGCMIELFSRNKKYANVIEVFEKMRSAGY-FPD----SHIIALVLNSYGK---LREFETADDLYSEMQEEGCVFS 469 (542)
Q Consensus 398 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 469 (542)
.+...+..++..+...|++++|...++++.+... .|+ ...+..++..+.. .|++++|...++++.+.. +.
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 447 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PR 447 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TT
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cc
Confidence 3455666666667777777777777776655210 011 2256666666666 677777777777776654 12
Q ss_pred hHHHH-HHHHHHhccCChHHHHHHHHHH
Q 038401 470 DQVHF-QMLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 470 ~~~~~-~l~~~~~~~g~~~~A~~~~~~~ 496 (542)
+...+ .++.++...|++++|...+++.
T Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 22222 2666777777777777777763
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-25 Score=220.24 Aligned_cols=268 Identities=10% Similarity=-0.030 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 264 VVTYNTMIKIYGK---SLEHEKATNLMQEMQN-----RGI--------EPNAITYSTIIAIWGKAGKLDRAAMLFQKLRS 327 (542)
Q Consensus 264 ~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (542)
...+......+.. .|++++|...++++.+ ..- +.+...+..+...+...|+++.|...++.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455555555554 8999999999999887 211 22345778888899999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCC---CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 038401 328 SGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPN---TIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFG 404 (542)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 404 (542)
.... ...+..+..++...|++++|...++.+...+ ...+..+...+...|++++|...++++++.. +.+...+.
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 342 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYI 342 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHH
Confidence 7533 8888999999999999999999999987643 3445667888999999999999999999874 34677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCch----H-HHHHHHHH
Q 038401 405 CMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSD----Q-VHFQMLSL 479 (542)
Q Consensus 405 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~-~~~~l~~~ 479 (542)
.++..+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++++.+..+..+. . ....++.+
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 99999999999999999999998843 225678889999999999999999999999886522221 1 44449999
Q ss_pred Hhc---cCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCCC
Q 038401 480 YGA---RKDFNMLESLFERL-DSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRTF 537 (542)
Q Consensus 480 ~~~---~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 537 (542)
+.. .|++++|...+++. ...|. ....+..++.+|...|++++|...++++.+....
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPR--SEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 999 99999999999995 44444 5678999999999999999999999999886643
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.8e-23 Score=201.31 Aligned_cols=386 Identities=11% Similarity=0.034 Sum_probs=268.3
Q ss_pred HHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhc
Q 038401 109 ISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEV 188 (542)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 188 (542)
...+..+.... +.+...+..+...+.+.|++++|..+|+++.+.. +.+...+..+..++...|++++|...|+++.+.
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33444444432 5577888899999999999999999999988763 347888999999999999999999999999887
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh---hHHHHHHHH------------HHhcCcHHHHHHHHH
Q 038401 189 NCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSV---VSYNTLLRV------------YGEAELFGEAIHLFR 253 (542)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~------------~~~~~~~~~a~~~~~ 253 (542)
+ +.+..++..+..++...|++++|...|+.+.... +.+. ..+..+... +...|++++|...++
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5 4467888889999999999999999999998764 3344 566666443 677778888888887
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 038401 254 LMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEID 333 (542)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 333 (542)
.+.... +.+...+..+..+|.+.|++++|...++++.+.. +.+..++..+...+...|++++|...|+.+.+.. +.+
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDH 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCh
Confidence 777654 3466677777777778888888888887776652 3456777777777777788888888877777653 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHH
Q 038401 334 PVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKD----ISVFGCMIEL 409 (542)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~ 409 (542)
...+..+... +... ....++..+...|++++|...|+++++..+ .+ ...+..++.+
T Consensus 245 ~~~~~~~~~~----~~~~---------------~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 245 KRCFAHYKQV----KKLN---------------KLIESAEELIRDGRYTDATSKYESVMKTEP-SIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHH----HHHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHH
Confidence 3333322111 0000 012236677888889999999988887532 22 3477888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHH---------
Q 038401 410 FSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLS--------- 478 (542)
Q Consensus 410 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~--------- 478 (542)
+.+.|++++|+..++++.+. .| +...|..++.+|...|++++|...++++++.. |.+...+. +..
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHhhccc
Confidence 99999999999999998874 35 57888889999999999999999999998876 22233333 442
Q ss_pred ---HHhccC-----ChHHHHHHHHH--HhcCCCCCc--------hhHHHHHHHHHHhhcchhhHH
Q 038401 479 ---LYGARK-----DFNMLESLFER--LDSDSNINK--------KELHHVVAGIYERANRLNDAS 525 (542)
Q Consensus 479 ---~~~~~g-----~~~~A~~~~~~--~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~ 525 (542)
.|...| +.+++.+.+++ +...|+..+ ...+..+..+|...|+.+++.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 233344 56777888886 333443222 135666777777777766543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=5.9e-23 Score=197.66 Aligned_cols=356 Identities=12% Similarity=0.050 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHH
Q 038401 71 DSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEM 150 (542)
Q Consensus 71 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 150 (542)
..+...+..+.... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444555555442 3467789999999999999999999999998763 557889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCCh---hhHHHHHHH------------HhccCCHHHHHH
Q 038401 151 REQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDL---TTCNIMIDV------------YGQLDMAKDADR 215 (542)
Q Consensus 151 ~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~~~~~~a~~ 215 (542)
.+.+ +.+...+..+..+|.+.|++++|.+.|+++.+.+ +.+. ..+..++.. +...|++++|..
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9875 3468899999999999999999999999998864 3344 667766444 889999999999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 038401 216 LFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGI 295 (542)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (542)
.|+.+.... +.+..++..+..++...|++++|...|+.+.+.. +.+..++..+...|...|++++|...++++...
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 240 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-- 240 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 999999875 5678889999999999999999999999998764 457889999999999999999999999999876
Q ss_pred CCC-HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q 038401 296 EPN-AITYSTI------------IAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ 362 (542)
Q Consensus 296 ~p~-~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (542)
.|+ ...+..+ ...+...|++++|...|+.+.+.... +....
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~------------------------- 294 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYT------------------------- 294 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHH-------------------------
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHH-------------------------
Confidence 343 3344333 45555566666666666665554211 11100
Q ss_pred CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 038401 363 PNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD-SHIIALV 441 (542)
Q Consensus 363 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 441 (542)
...+..+..++.+.|++++|+..++++++.. +.+...|..++.+|...|++++|...|+++++ ..|+ ...+..+
T Consensus 295 --~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 369 (450)
T 2y4t_A 295 --VRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGL 369 (450)
T ss_dssp --HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHH
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 0012333455566667777777777776652 34677888888888888888888888888887 4453 4555555
Q ss_pred HH------------HHhccC-----cHHHHHHHHHH-HHHcC
Q 038401 442 LN------------SYGKLR-----EFETADDLYSE-MQEEG 465 (542)
Q Consensus 442 ~~------------~~~~~g-----~~~~A~~~~~~-~~~~~ 465 (542)
.. .|...| +.+++.+.|++ ..+..
T Consensus 370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC
Confidence 52 233344 56677888886 45443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=2.2e-23 Score=205.51 Aligned_cols=428 Identities=12% Similarity=0.081 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 038401 19 VFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIEL 98 (542)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (542)
...|..+...+.+.|++++|+..|+.+.+..+ .++.+|..+..++...|++++|++.++++.+.++ .+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 45677778888888888888888888887653 3677888888888888888888888888877653 367778888888
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHC
Q 038401 99 ARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQ------GVKPDTVSYSTLLNLYVEN 172 (542)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~l~~~~~~~ 172 (542)
+...|++++|...|+.+. . .|+ .....+..+...+....|...++.+... ...|+.. .+..+...
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~ 173 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-L--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFGI 173 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHh-c--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHHh
Confidence 888888888888886332 2 222 1122233444555667777777777543 1223322 23334455
Q ss_pred CChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHhcc--------CCHHHHHHHHHHHHHCCCCCCh-------hHHHHHH
Q 038401 173 HKFVEALSVFAEMNEVNCPLDLT-TCNIMIDVYGQL--------DMAKDADRLFWSMRKMGIDPSV-------VSYNTLL 236 (542)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll 236 (542)
.+.+.+...+...... .+... ....+...+... +++++|..+++.+.+.. +.+. .++..+.
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTG 250 (537)
T ss_dssp SCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHH
Confidence 5555554443332221 11111 222222222221 35666666666666543 1221 2344444
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 038401 237 RVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLD 316 (542)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 316 (542)
..+...|++++|...++...... |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 55566666666666666666653 335566666666666666666666666665543 234555666666666666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 038401 317 RAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ---PNTIPRETAITILARAGRIEEATWVFRQAFD 393 (542)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (542)
+|...++.+.+.. +.+...+..+..++...|++++|...++++.. .++..+..+...+...|++++|...|+++++
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666666543 22345555555555556665555555555432 1222333444444555555555555555443
Q ss_pred cCCC-----cCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 038401 394 AGEV-----KDISVFGCMIELFSRN----------KKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLY 458 (542)
Q Consensus 394 ~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 458 (542)
..+. .....+..+..++... |++++|+..|+++.+.. +.+...+..++.+|...|++++|...|
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 2110 0111122233344444 55555555555554421 113344444555555555555555555
Q ss_pred HHHHHcC
Q 038401 459 SEMQEEG 465 (542)
Q Consensus 459 ~~~~~~~ 465 (542)
+++.+..
T Consensus 486 ~~al~~~ 492 (537)
T 3fp2_A 486 EDSAILA 492 (537)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 5555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=2e-23 Score=205.83 Aligned_cols=434 Identities=13% Similarity=0.063 Sum_probs=317.5
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHH
Q 038401 53 DRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMIN 132 (542)
Q Consensus 53 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 132 (542)
....|..+...+.+.|++++|++.|+++.+..+ .+...+..+..++...|++++|.+.++++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 345788888899999999999999999998753 478899999999999999999999999998865 557888999999
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCC--CCChhhHHHHHHHHhccCCH
Q 038401 133 VFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNC--PLDLTTCNIMIDVYGQLDMA 210 (542)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 210 (542)
++...|++++|...|+.+ .. .|+. ....+..+...+....+...++.+..... .+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999743 22 2322 22234455566667889999988865310 01111122333444455555
Q ss_pred HHHHHHHHHHHHCCCCCChh-HHHHHHHHHHh--------cCcHHHHHHHHHHHHhcCCCCc------HHHHHHHHHHHH
Q 038401 211 KDADRLFWSMRKMGIDPSVV-SYNTLLRVYGE--------AELFGEAIHLFRLMQRKEIEQN------VVTYNTMIKIYG 275 (542)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~ 275 (542)
+.+...+...... .+... ....+...+.. .|++++|..+++.+.+...... ..++..+...+.
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 5554443332211 12211 23333333222 2578999999999987642211 235667778888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 038401 276 KSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKR 355 (542)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (542)
..|++++|...++++.+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999987 5667888899999999999999999999998875 4578889999999999999999999
Q ss_pred HHHHhcC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 038401 356 LLHELRQ---PNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAG-- 430 (542)
Q Consensus 356 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 430 (542)
.++++.. .+...+..+..++...|++++|...++++++.. +.+...+..++..+...|++++|+..|+++.+..
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9998764 334456677888999999999999999999874 4567788999999999999999999999987632
Q ss_pred ---CCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH
Q 038401 431 ---YFPDSHIIALVLNSYGKL----------REFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 431 ---~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 496 (542)
.......+......+... |++++|...++++.+.. |.+...+. ++.++...|++++|.+.+++.
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111223344556677777 99999999999999986 22333344 999999999999999999994
Q ss_pred -hcCCC
Q 038401 497 -DSDSN 501 (542)
Q Consensus 497 -~~~~~ 501 (542)
...|.
T Consensus 489 l~~~~~ 494 (537)
T 3fp2_A 489 AILART 494 (537)
T ss_dssp HHHC--
T ss_pred HHhCCC
Confidence 44554
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=3.2e-19 Score=172.94 Aligned_cols=348 Identities=15% Similarity=0.122 Sum_probs=181.3
Q ss_pred CHHhHHHHHHHHHh----cCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCH
Q 038401 88 DLVLYSNLIELARK----LSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGK----AKLFKEARLLIEEMREQGVKPDT 159 (542)
Q Consensus 88 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~ 159 (542)
++..+..+...|.. .+++++|...|++..+.| ++..+..|...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555555555555 556666666666655543 34445555555555 555666666666555543 44
Q ss_pred HHHHHHHHHHHH----CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhH
Q 038401 160 VSYSTLLNLYVE----NHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQ----LDMAKDADRLFWSMRKMGIDPSVVS 231 (542)
Q Consensus 160 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 231 (542)
..+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .++.++|...|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 445555555555 455555555555555543 34444444444443 445555555555555432 3344
Q ss_pred HHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038401 232 YNTLLRVYGE----AELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGK----SLEHEKATNLMQEMQNRGIEPNAITYS 303 (542)
Q Consensus 232 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~ 303 (542)
+..+...|.. .++.++|.+.|+...+.+ +...+..+...|.. .+++++|...|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4444444444 455555555555544432 33344444444443 445555555555544432 233333
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHh-
Q 038401 304 TIIAIWGK----AGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARA- 378 (542)
Q Consensus 304 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~- 378 (542)
.+...+.. .++.++|...|+...+.+ ++..+..+ ...+...
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~L-------------------------------g~~y~~~~ 305 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYL-------------------------------AHLYDKGA 305 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHH-------------------------------HHHHHHCB
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHH-------------------------------HHHHHcCC
Confidence 33333433 444555555555444432 22333333 3333333
Q ss_pred ----CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----
Q 038401 379 ----GRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNK---KYANVIEVFEKMRSAGYFPDSHIIALVLNSYGK---- 447 (542)
Q Consensus 379 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 447 (542)
+++++|...|+++.+.+ +...+..+...|...| ++++|++.|++..+.+ +...+..+...|..
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 56666666666666543 3445555666665544 5666777776666642 45556666666665
Q ss_pred cCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhc----cCChHHHHHHHHHH
Q 038401 448 LREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGA----RKDFNMLESLFERL 496 (542)
Q Consensus 448 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 496 (542)
.+++++|..+|+++.+.+ +....+.++.+|.. .+++++|..++++.
T Consensus 380 ~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 566777777777766654 23333446666665 66677777777663
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=4e-20 Score=172.10 Aligned_cols=328 Identities=12% Similarity=0.053 Sum_probs=198.4
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 038401 158 DTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLR 237 (542)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 237 (542)
+...+..+...+...|++++|+..|+++.+.. |.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567777788888888888888888887754 4467777778888888888888888888877664 345667777777
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 038401 238 VYGEAELFGEAIHLFRLMQRKEIE--QNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKL 315 (542)
Q Consensus 238 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 315 (542)
.+...|++++|...++...+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 888888888888888877765310 23333333311000 00111223344445555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCC---CHHHHHHHHHHhCCHHHHHHHHHHHH
Q 038401 316 DRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTI---PRETAITILARAGRIEEATWVFRQAF 392 (542)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 392 (542)
++|...++.+.+.. +.+...+..+..++...|++++|...++++...++. .+..+...+...|++++|...+++++
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555554442 234444444555555555555555555544432221 22333444555555555555555555
Q ss_pred HcCCCcCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHhccCcHHHHH
Q 038401 393 DAGEVKDISVFG------------CMIELFSRNKKYANVIEVFEKMRSAGYFPD-S----HIIALVLNSYGKLREFETAD 455 (542)
Q Consensus 393 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~ 455 (542)
+..+ .+...+. .++..+...|++++|+..++++.+.. |+ . ..+..++.++...|++++|.
T Consensus 216 ~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5422 2222222 33566778888888888888887743 43 2 23445677888888888888
Q ss_pred HHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHh-cCCCCCchhHHHHHHHHHHhh
Q 038401 456 DLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLD-SDSNINKKELHHVVAGIYERA 518 (542)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 518 (542)
..++++.+.. |.+...+. ++.++...|++++|...+++.. ..|+ ...++..+..++...
T Consensus 293 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN--DQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHH
Confidence 8888888865 22333333 8888888888888888888843 3443 445666666655443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=3e-19 Score=166.17 Aligned_cols=317 Identities=12% Similarity=0.027 Sum_probs=210.1
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038401 18 SVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIE 97 (542)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 97 (542)
|+..+..+...+.+.|++++|...|+.+.+..+ .+..++..+..++...|++++|+..++++.+..+ .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 566788889999999999999999999988753 3678899999999999999999999999988743 36788889999
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCC---ccHhHHHHH------------HHHHhccCcHHHHHHHHHHHHHcCCCCCHHHH
Q 038401 98 LARKLSDYSKAISIFSRLKSSGIV---PDLVAYNTM------------INVFGKAKLFKEARLLIEEMREQGVKPDTVSY 162 (542)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 162 (542)
++...|++++|...++++.+.. + .+...+..+ ...+...|++++|...++++.+.. +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999998763 2 244444444 456667777777777777776653 2356666
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHH---------
Q 038401 163 STLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYN--------- 233 (542)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 233 (542)
..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence 777777777777777777777776653 4456667777777777777777777777776553 22222222
Q ss_pred ---HHHHHHHhcCcHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038401 234 ---TLLRVYGEAELFGEAIHLFRLMQRKEIEQNV----VTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTII 306 (542)
Q Consensus 234 ---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 306 (542)
.+...+...|++++|...++.+...... +. ..+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 1134455566666666666665554321 11 123334555556666666666666655542 22445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038401 307 AIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVA 343 (542)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (542)
..+...|++++|...|+.+.+.. +.+...+..+..+
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 56666666666666666665542 2234444444333
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=5e-18 Score=164.59 Aligned_cols=368 Identities=14% Similarity=0.126 Sum_probs=284.2
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHH
Q 038401 37 LAHGLFDEMRQRGIAPDRYTYSTLITCFGK----EGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARK----LSDYSKA 108 (542)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 108 (542)
.+...+....+.| ++..+..+...|.. .+++++|+.+|++..+.| +...+..+...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455566655554 77788888888887 899999999999998864 67788888888988 8999999
Q ss_pred HHHHHHhHhCCCCccHhHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CCChHHHHH
Q 038401 109 ISIFSRLKSSGIVPDLVAYNTMINVFGK----AKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVE----NHKFVEALS 180 (542)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~a~~ 180 (542)
...|++..+.| ++..+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999998865 56677777778877 789999999999998875 67778888888887 789999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCcHHHHHHHH
Q 038401 181 VFAEMNEVNCPLDLTTCNIMIDVYGQ----LDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGE----AELFGEAIHLF 252 (542)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~ 252 (542)
.|++..+.+ +...+..+...|.. .++.++|...|++..+.| +...+..+...|.. .+++++|...|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998875 67788888888887 899999999999998865 55677778888876 78999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHH
Q 038401 253 RLMQRKEIEQNVVTYNTMIKIYGK----SLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKA-----GKLDRAAMLFQ 323 (542)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~ 323 (542)
+...+.+ +...+..+...|.. .++.++|...|++..+.| +...+..+...+... +++++|...|+
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 9988764 55677777778877 899999999999998765 556677777777776 89999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHH
Q 038401 324 KLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVF 403 (542)
Q Consensus 324 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 403 (542)
+..+.+ +...+..+...|...|. ..++++|.+.|+++.+. .++..+
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~----------------------------~~~~~~A~~~~~~a~~~---~~~~a~ 366 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGS----------------------------EEEHKKAVEWFRKAAAK---GEKAAQ 366 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCC----------------------------HHHHHHHHHHHHHHHHT---TCHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCC----------------------------cccHHHHHHHHHHHHHC---CCHHHH
Confidence 998875 44555666665554431 01345555556666554 345666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHcC
Q 038401 404 GCMIELFSR----NKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGK----LREFETADDLYSEMQEEG 465 (542)
Q Consensus 404 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 465 (542)
..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|..+|+++.+.+
T Consensus 367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 367 FNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 667777766 677777777777777643 45566666666665 677777777777777765
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=3.8e-18 Score=167.14 Aligned_cols=428 Identities=11% Similarity=0.083 Sum_probs=219.2
Q ss_pred hHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 038401 6 LDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRV 85 (542)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 85 (542)
|+...+.. +-+...|..++.. .+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++....
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 44444432 4577788888884 77889999999999998863 3467788899998888999999999999988763
Q ss_pred CCCHHhHHHHHHHH-HhcCCHHHHHH----HHHHhHh-CCCCc-cHhHHHHHHHHHhc---------cCcHHHHHHHHHH
Q 038401 86 SGDLVLYSNLIELA-RKLSDYSKAIS----IFSRLKS-SGIVP-DLVAYNTMINVFGK---------AKLFKEARLLIEE 149 (542)
Q Consensus 86 ~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~ 149 (542)
|+...|..++... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 5777777766533 35567666654 6666553 24333 45666666665543 5677777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH------HC
Q 038401 150 MREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMR------KM 223 (542)
Q Consensus 150 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~ 223 (542)
..+....+....|..........|. .+...++. ...+++..|..++.... +.
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 7763111111222222211100010 00001110 12233444554444321 11
Q ss_pred C---CCCC--------hhHHHHHHHHHHhc----CcH----HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc-------c
Q 038401 224 G---IDPS--------VVSYNTLLRVYGEA----ELF----GEAIHLFRLMQRKEIEQNVVTYNTMIKIYGK-------S 277 (542)
Q Consensus 224 ~---~~~~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~ 277 (542)
. ++|+ ...|...+...... ++. ..+..+|++..... +.+...|..++..+.+ .
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhc
Confidence 1 1222 12333333222111 111 24555666655542 3345556666555553 4
Q ss_pred CCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcCC
Q 038401 278 LEHE-------KATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDP-VLYQTMIVAYERVGL 349 (542)
Q Consensus 278 ~~~~-------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 349 (542)
|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|+
T Consensus 293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcC
Confidence 6654 566666665542112235556666666666666666666666666542 1122 355555555555555
Q ss_pred HHHHHHHHHHhcCCCCCCHHHH-HHH---HHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038401 350 VAHAKRLLHELRQPNTIPRETA-ITI---LARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEK 425 (542)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~l-~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 425 (542)
+++|..+|++..+..+..+... ..+ +...|+.++|..+|+++++.. +.++..|..++..+.+.|+.++|..+|++
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 5555555555443222221111 111 113455555555555554431 23344455555555555555555555555
Q ss_pred HHhCC-CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038401 426 MRSAG-YFPD--SHIIALVLNSYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 426 ~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 464 (542)
++..+ ..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 54431 1111 224444444444445555555555555443
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=4.4e-17 Score=165.21 Aligned_cols=383 Identities=13% Similarity=0.113 Sum_probs=224.1
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 038401 17 PSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGI--APDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSN 94 (542)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 94 (542)
.++.--...+++|...|.+.+|+++++.....+- .-+...-+.++.+..+. +..+..++..++... + ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 3444456677788888888888888888874321 12334455566555554 445555555444321 1 233
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Q 038401 95 LIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHK 174 (542)
Q Consensus 95 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 174 (542)
+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 5566667777777777777752 11222233322 4566777777666442 46667777777777777
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHH
Q 038401 175 FVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRL 254 (542)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 254 (542)
+++|++.|.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 77777777543 356667777777777777777777777666543 33333444677777777666433322
Q ss_pred HHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038401 255 MQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDP 334 (542)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (542)
. .++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+++.. +.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 1 235555666777777777777777777664 256777777777777777777776652 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-
Q 038401 335 VLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRN- 413 (542)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 413 (542)
.+|..+..+|...|++..|...... ...++.....++..|.+.|.+++|+.+++..+... +.....|+.+..+|++.
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 5666666666666666666655543 22233344455666666666666666666665442 23344454455444432
Q ss_pred -CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHhccCcHHHHH
Q 038401 414 -KKYANVIEVFEKMRSAGYFP------DSHIIALVLNSYGKLREFETAD 455 (542)
Q Consensus 414 -g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~ 455 (542)
++..++.++|..-.. ++| +...|..+...|.+.|+++.|.
T Consensus 1329 peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 334444444443222 222 2345555666666666666555
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.1e-19 Score=165.10 Aligned_cols=285 Identities=10% Similarity=-0.021 Sum_probs=184.5
Q ss_pred ChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038401 228 SVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIA 307 (542)
Q Consensus 228 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 307 (542)
+...+..+...+...|++++|.++++.+.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34444555555555555666665555555443 2233344445555555566666666665555542 223445555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHhCCHHH
Q 038401 308 IWGKAG-KLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ---PNTIPRETAITILARAGRIEE 383 (542)
Q Consensus 308 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 383 (542)
.+...| ++++|...++.+.+.. +.+...+..+...+...|++++|...++++.. .+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 555556 5666666666655543 22445555566666666666666666665543 122334445666777778888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHhccCcHHHHH
Q 038401 384 ATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAG--------YFPDSHIIALVLNSYGKLREFETAD 455 (542)
Q Consensus 384 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~ 455 (542)
|.+.++++++.. +.+...+..++..+...|++++|+..++++.+.. .+.+..++..++.++...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888887763 4567888889999999999999999999887631 1234578888899999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHh-cCCCCCchhHHHHHHHHHH-hhcc
Q 038401 456 DLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLD-SDSNINKKELHHVVAGIYE-RANR 520 (542)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~~g~ 520 (542)
..++++.+.. +.+...+. ++.++...|++++|.+.+++.. ..|+ ....+..++.++. ..|+
T Consensus 257 ~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 257 DYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD--DTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC--CHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC--chHHHHHHHHHHHHHhCc
Confidence 9999999876 22333333 8899999999999999999953 3443 5577888888884 4454
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.1e-17 Score=163.81 Aligned_cols=398 Identities=10% Similarity=0.104 Sum_probs=264.1
Q ss_pred ChhhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-hccCCHHHHHH----
Q 038401 1 RSVAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCF-GKEGMFDSAIS---- 75 (542)
Q Consensus 1 ~A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~---- 75 (542)
+|+.+|+.+.+. ++.+...|..++..+.+.|++++|..+|+++.+.. |+...|...+... ...|+++.|.+
T Consensus 30 ~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~ 105 (530)
T 2ooe_A 30 KARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQ 105 (530)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHH
Confidence 367888988865 46678899999999999999999999999999874 6888888887533 45677776665
Q ss_pred HHHHHHhC-CCCC-CHHhHHHHHHHHHh---------cCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHH
Q 038401 76 WLQQMEQD-RVSG-DLVLYSNLIELARK---------LSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEAR 144 (542)
Q Consensus 76 ~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 144 (542)
+|+..... |..| +...|...+..... .|+++.|..+|++..+....+....|..........|. ..+
T Consensus 106 ~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~- 183 (530)
T 2ooe_A 106 AYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLA- 183 (530)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHH-
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHH-
Confidence 77776553 4433 56778887777655 68899999999999873211112333332221111110 001
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH------HhcC---CCCC--------hhhHHHHHHHHhc-
Q 038401 145 LLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEM------NEVN---CPLD--------LTTCNIMIDVYGQ- 206 (542)
Q Consensus 145 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~- 206 (542)
..++. ...+++..|..++..+ .+.. ++|+ ...|...+.....
T Consensus 184 ------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 184 ------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp ------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred ------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 11110 0123344455444442 1111 2332 1344444433222
Q ss_pred ---cCCH----HHHHHHHHHHHHCCCCCChhHHHHHHHHHHh-------cCcHH-------HHHHHHHHHHhcCCCCcHH
Q 038401 207 ---LDMA----KDADRLFWSMRKMGIDPSVVSYNTLLRVYGE-------AELFG-------EAIHLFRLMQRKEIEQNVV 265 (542)
Q Consensus 207 ---~~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~ 265 (542)
.++. ..+..+|++..... +.+...|..++..+.+ .|+++ +|..+++...+.-.+.+..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 1222 36667787777653 4466777777777664 67776 8888888887632244677
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038401 266 TYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPN-A-ITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVA 343 (542)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (542)
.|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|+++.|..+|++..+.. +.+...+......
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence 8888888888888999999999888875 443 2 467777777788888899999998888763 2233333322222
Q ss_pred -HHHcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-Cc--CHHHHHHHHHHHHhcCCH
Q 038401 344 -YERVGLVAHAKRLLHELRQ---PNTIPRETAITILARAGRIEEATWVFRQAFDAGE-VK--DISVFGCMIELFSRNKKY 416 (542)
Q Consensus 344 -~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~ 416 (542)
+...|+.++|..+|+...+ .++..|..++..+.+.|+.++|..+|++++.... .| ....|...+......|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3468889999998887654 2344566667777888999999999999988643 22 255788888888889999
Q ss_pred HHHHHHHHHHHh
Q 038401 417 ANVIEVFEKMRS 428 (542)
Q Consensus 417 ~~A~~~~~~~~~ 428 (542)
+.+..+++++.+
T Consensus 480 ~~~~~~~~r~~~ 491 (530)
T 2ooe_A 480 ASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999987
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=8.2e-19 Score=161.12 Aligned_cols=290 Identities=13% Similarity=0.041 Sum_probs=165.5
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 038401 158 DTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLR 237 (542)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 237 (542)
+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34445555566666666666666666665543 3344455555556666666666666666666543 334555666666
Q ss_pred HHHhcC-cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 038401 238 VYGEAE-LFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLD 316 (542)
Q Consensus 238 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 316 (542)
.+...| ++++|...++...... +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 666666 6666666666665543 2244556666666666666666666666665542 223344555566666666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcC-
Q 038401 317 RAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAG- 395 (542)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 395 (542)
+|...++.+.+.. +.+...+..+...+...|++++|...+++. ++..
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-------------------------------~~~~~ 224 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA-------------------------------LEKIK 224 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------HHHHT
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH-------------------------------HHHhh
Confidence 6666666666553 334555555555555555555555555443 3211
Q ss_pred -------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC
Q 038401 396 -------EVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVF 468 (542)
Q Consensus 396 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 468 (542)
.+....++..++.++...|++++|+..++++.+.. +.+...+..++.++...|++++|...++++.+.. |
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 301 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--R 301 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--S
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--C
Confidence 12234566666777777777777777777766632 1234566666677777777777777777776654 2
Q ss_pred chHHHHH-HHHHH-hccCCh
Q 038401 469 SDQVHFQ-MLSLY-GARKDF 486 (542)
Q Consensus 469 ~~~~~~~-l~~~~-~~~g~~ 486 (542)
.+...+. ++.++ ...|+.
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC-
T ss_pred CchHHHHHHHHHHHHHhCch
Confidence 2222223 55555 344443
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=1.9e-16 Score=160.67 Aligned_cols=410 Identities=14% Similarity=0.133 Sum_probs=300.1
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHH
Q 038401 53 DRYTYSTLITCFGKEGMFDSAISWLQQMEQDR--VSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTM 130 (542)
Q Consensus 53 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 130 (542)
++.-....+++|...|.+.+|++++++..-.+ +.-+...-+.++.+..+. +.....++..++... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 45556778888889999999999999987432 113445666677666666 566666666665522 1 3336
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCH
Q 038401 131 INVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMA 210 (542)
Q Consensus 131 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (542)
...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. .++.+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 6778889999999999998631 2222233332 778899999998865 3578899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038401 211 KDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEM 290 (542)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (542)
++|.+.|.+. .|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...++
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9999999653 467778889999999999999999999877764 33333445889999999888644432
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHH
Q 038401 291 QNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRET 370 (542)
Q Consensus 291 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (542)
. .++...|..+...|...|++++|..+|..+ ..|..+..++.+.|+++.|.+.+++. .++.+|..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWke 1255 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKE 1255 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHH
Confidence 2 456677778899999999999999999985 37899999999999999999999987 45678888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--cc
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYG--KL 448 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~ 448 (542)
...+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+... +-....|..+...|. +-
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCH
Confidence 888899999999998876643 3466777889999999999999999999888633 223456655555554 55
Q ss_pred CcHHHHHHHHHHHHHcCCCCc------hHHHHH-HHHHHhccCChHHHHHHHHH-Hhc----------CCCCCchhHHHH
Q 038401 449 REFETADDLYSEMQEEGCVFS------DQVHFQ-MLSLYGARKDFNMLESLFER-LDS----------DSNINKKELHHV 510 (542)
Q Consensus 449 g~~~~A~~~~~~~~~~~~~~~------~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~----------~~~~~~~~~~~~ 510 (542)
++..++.+.|..-... ++ +...|. +..+|.+.|+++.|...+-. ... -....+.+.|+.
T Consensus 1330 eklmEhlk~f~~rini---~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyyk 1406 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNI---PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYR 1406 (1630)
T ss_pred HHHHHHHHHHHHhccc---chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHH
Confidence 6777777777755442 23 233444 88999999999999832222 110 012235677777
Q ss_pred HHHHHHhhc
Q 038401 511 VAGIYERAN 519 (542)
Q Consensus 511 l~~~~~~~g 519 (542)
.+..|....
T Consensus 1407 ai~Fyl~~~ 1415 (1630)
T 1xi4_A 1407 AIQFYLEFK 1415 (1630)
T ss_pred HHHHHHhhC
Confidence 777776444
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.4e-19 Score=168.99 Aligned_cols=307 Identities=10% Similarity=-0.024 Sum_probs=196.4
Q ss_pred HHhccCCHHHHHH-HHHHHHHCCC-CC--ChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccC
Q 038401 203 VYGQLDMAKDADR-LFWSMRKMGI-DP--SVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSL 278 (542)
Q Consensus 203 ~~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (542)
++...|++++|.. .+++...... .| +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445566666665 5554433210 01 23445566666666666666666666666553 335556666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038401 279 EHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLH 358 (542)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (542)
++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+.... +...+..+... ...
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~----- 178 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG----- 178 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh-----
Confidence 6666666666666553 334556666666666666666666666666654311 11111111000 000
Q ss_pred HhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHH
Q 038401 359 ELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVK-DISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSH 436 (542)
Q Consensus 359 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 436 (542)
... ...... +..+...|++++|...++++++..+.. +..++..++.++...|++++|+..|+++++. .| +..
T Consensus 179 --~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 252 (368)
T 1fch_A 179 --AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYL 252 (368)
T ss_dssp ----------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred --hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHH
Confidence 000 000011 223338899999999999999875432 5889999999999999999999999999984 35 578
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH-hcCCCC---------Cch
Q 038401 437 IIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL-DSDSNI---------NKK 505 (542)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~---------~~~ 505 (542)
++..++..+...|++++|...++++.+.. |.+...+. ++.++.+.|++++|...+++. ...|.. ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 89999999999999999999999999976 23333444 999999999999999999994 333322 115
Q ss_pred hHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 506 ELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
..|..++.+|...|++++|..++++..
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 789999999999999999999987543
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=6.9e-17 Score=156.22 Aligned_cols=381 Identities=13% Similarity=-0.000 Sum_probs=216.9
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcC------
Q 038401 124 LVAYNTMINVFGKAKLFKEARLLIEEMREQ--------GVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVN------ 189 (542)
Q Consensus 124 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 189 (542)
...|+.|...+...|++++|++.|++..+. .-+....+|..+..+|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 334555555555555555555555544321 111234556666666666666666666666554310
Q ss_pred -CCCChhhHHHHHHHHhc--cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH---HHhcCcHHHHHHHHHHHHhcCCCCc
Q 038401 190 -CPLDLTTCNIMIDVYGQ--LDMAKDADRLFWSMRKMGIDPSVVSYNTLLRV---YGEAELFGEAIHLFRLMQRKEIEQN 263 (542)
Q Consensus 190 -~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 263 (542)
......++.....++.. .+++++|...|++..+.. +.++..+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01122334443333333 345777777777777653 2334444444433 234456667777777766653 234
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038401 264 VVTYNTMIKIYGK----SLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQT 339 (542)
Q Consensus 264 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (542)
...+..+...+.. .++.++|.+.+++..... +.+...+..+...+...|+++.|...++++.+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 4555555444433 456677888888776653 3456677778888888888888888888887764 335666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 038401 340 MIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANV 419 (542)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 419 (542)
+..+|...+....+... ..........+.++.|...++++.+.. +.+...+..++..+...|++++|
T Consensus 287 lg~~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHH
Confidence 66655432211111100 001111122345678888899888764 35567788899999999999999
Q ss_pred HHHHHHHHhCCCCCCHH----HHHHHHH-HHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHH
Q 038401 420 IEVFEKMRSAGYFPDSH----IIALVLN-SYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFE 494 (542)
Q Consensus 420 ~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 494 (542)
+..|+++++.. |+.. .+..+.. .....|+.++|+..|+++++.. |+..... +..+.+.++++
T Consensus 354 ~~~~~kaL~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~---~~~~~~~--------~~~~~l~~~~~ 420 (472)
T 4g1t_A 354 EYYFQKEFSKE--LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN---QKSREKE--------KMKDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC---CCCHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHH--------HHHHHHHHHHH
Confidence 99999999854 4432 2233332 3357899999999999999976 3322221 11233445555
Q ss_pred H-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 495 R-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 495 ~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
+ +..+|. ...+|..++.+|...|++++|++.|+++.+.+.
T Consensus 421 ~~l~~~p~--~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 421 MRLSKNGA--DSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHCC---CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 5 455555 457899999999999999999999999988653
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=2.5e-18 Score=160.50 Aligned_cols=310 Identities=10% Similarity=0.016 Sum_probs=177.8
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHH-HHHHHHhCCCC---CCHHhHHHHHHHHHhcCCHHH
Q 038401 32 AKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAIS-WLQQMEQDRVS---GDLVLYSNLIELARKLSDYSK 107 (542)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 107 (542)
.+.++.+...|+.+...+. + ++...|++++|++ .+++....... .+...+..+...+...|++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDA--E---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHcCCc--h---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 3445555556666555421 1 2334578888887 77765544221 134567778888888899999
Q ss_pred HHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 038401 108 AISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNE 187 (542)
Q Consensus 108 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (542)
|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++..
T Consensus 83 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 83 AVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999888764 4567788888888888899999999998888764 34677888888888889999999999888887
Q ss_pred cCCCCChhhHHH---------------HHHHHhccCCHHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCcHHHHHH
Q 038401 188 VNCPLDLTTCNI---------------MIDVYGQLDMAKDADRLFWSMRKMGIDP--SVVSYNTLLRVYGEAELFGEAIH 250 (542)
Q Consensus 188 ~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~ 250 (542)
... .+...+.. .+..+...|++++|...++.+.+.. +. +..++..+...+...|++++|..
T Consensus 161 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 161 YTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp TST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 642 22222221 1222225566666666666666543 11 35556666666666666666666
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038401 251 LFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGV 330 (542)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 330 (542)
.++.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+.+.+...
T Consensus 239 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 239 CFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 666665543 2345566666666666666666666666665542 23455566666666666666666666666554321
Q ss_pred CC----------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038401 331 EI----------DPVLYQTMIVAYERVGLVAHAKRLLH 358 (542)
Q Consensus 331 ~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (542)
.. ...+|..+..++...|++++|..++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 10 14555556666666666666555543
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=8.7e-19 Score=159.20 Aligned_cols=393 Identities=11% Similarity=0.140 Sum_probs=166.8
Q ss_pred HhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 038401 31 RAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAIS 110 (542)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 110 (542)
+.|++++|.+.++++ +++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 567788999988887 34568999999999999999999998653 477788888889999999999999
Q ss_pred HHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCC
Q 038401 111 IFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNC 190 (542)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 190 (542)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777764 4557788889999999999988887774 367778899999999999999999999866
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 038401 191 PLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTM 270 (542)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 270 (542)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 36888888899999999988888877 267888888888888888888855544322 233334567
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC------CHHHHHHHHHH
Q 038401 271 IKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSS-GVEI------DPVLYQTMIVA 343 (542)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~ 343 (542)
+..|.+.|.+++|..+++...... +-....|+.+..++++- ++++..+.++...+. +++| +...|..++-.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877553 33456677776666543 344444444332221 1111 23344555555
Q ss_pred HHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038401 344 YERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVF 423 (542)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 423 (542)
|...++++.|....-+-. +..|. ...|..++.. ..+...|-..+..|. +....++.-+
T Consensus 292 y~~~~e~d~A~~tm~~h~---~~a~~---------------~~~f~~~~~k--v~n~elyYkai~fyl--~~~p~~l~~l 349 (449)
T 1b89_A 292 YDKYEEYDNAIITMMNHP---TDAWK---------------EGQFKDIITK--VANVELYYRAIQFYL--EFKPLLLNDL 349 (449)
T ss_dssp HHHTTCHHHHHHHHHHST---TTTCC---------------HHHHHHHHHH--CSSTHHHHHHHHHHH--HHCGGGHHHH
T ss_pred HHhhchHHHHHHHHHhCC---hhhhh---------------hHHHHHHHhc--hhHHHHHHHHHHHHH--hcCHHHHHHH
Confidence 555555555544322211 11110 0122222221 233444444444444 2223333333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHH
Q 038401 424 EKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 424 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (542)
-..+...+.| ..++..+.+.|...-+..++..+...+ ...+.-.+-.+|....+++.-+..++..
T Consensus 350 l~~l~~~ld~-----~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~~~ 414 (449)
T 1b89_A 350 LMVLSPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDAY 414 (449)
T ss_dssp HHHHGGGCCH-----HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHhccCc-----HHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 3333211222 233445566677777777776666654 3444444777888888888777776654
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1.3e-18 Score=162.32 Aligned_cols=274 Identities=7% Similarity=-0.075 Sum_probs=189.7
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038401 229 VVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAI 308 (542)
Q Consensus 229 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 308 (542)
...+..+...+.+.|++++|...|+.+.... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666667777777777777777776654 3356667777777777777777777777766653 2345666666667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHH
Q 038401 309 WGKAGKLDRAAMLFQKLRSSGVEIDP-VLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWV 387 (542)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 387 (542)
+...|++++|...++++.+.. |+. ..+..+. ........+...+...|++++|.+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC----------------------------------------CCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHH
Confidence 777777777777777666542 111 1111000 0112233446677788899999999
Q ss_pred HHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038401 388 FRQAFDAGEVK-DISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGC 466 (542)
Q Consensus 388 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 466 (542)
++++++..+.. ++.++..++..+...|++++|+..|+++++.. +.+..+|..++.+|...|++++|+..|+++++..
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 277 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ- 277 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 99998874321 68899999999999999999999999999843 2357889999999999999999999999999976
Q ss_pred CCchHHHHH-HHHHHhccCChHHHHHHHHHH-hcCCCCC----------chhHHHHHHHHHHhhcchhhHHHHHHH
Q 038401 467 VFSDQVHFQ-MLSLYGARKDFNMLESLFERL-DSDSNIN----------KKELHHVVAGIYERANRLNDASRIMNR 530 (542)
Q Consensus 467 ~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 530 (542)
|.+...+. ++.+|...|++++|...+++. ...|... ....|..++.++...|+.+.|....++
T Consensus 278 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 -PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 22334444 999999999999999999994 3232211 247899999999999999999888766
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.4e-19 Score=164.44 Aligned_cols=375 Identities=10% Similarity=0.124 Sum_probs=166.8
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHH
Q 038401 100 RKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEAL 179 (542)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 179 (542)
.+.|++++|.++++++ +++.+|..|..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3678899999998887 34468999999999999999999999653 47778999999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 038401 180 SVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKE 259 (542)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 259 (542)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988777664 3557788899999999999999888774 467779999999999999999999999866
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038401 260 IEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQT 339 (542)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (542)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 36889999999999999999999888 2788999999999999999999655443 2335555667
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcCCCCCC---HHHHHHHHHH--hCCHHHHHHHHHHHHHcCCCc------CHHHHHHHHH
Q 038401 340 MIVAYERVGLVAHAKRLLHELRQPNTIP---RETAITILAR--AGRIEEATWVFRQAFDAGEVK------DISVFGCMIE 408 (542)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~ 408 (542)
++..|.+.|.+++|..+++.....+... ++.+.-++++ -++..+.++.|..-+. ++| +...|..++.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999887654333 3444444443 3455555555553322 222 3567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH-----------HHHHcCCCCchHHHHHH
Q 038401 409 LFSRNKKYANVIEVFEKMRSAG-YFPDSHIIALVLNSYGKLREFETADDLYS-----------EMQEEGCVFSDQVHFQM 476 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~-----------~~~~~~~~~~~~~~~~l 476 (542)
.|.+.++++.|.. .|.+.. ..-+...+.-++.--....-+-+|..+|= ..+. |...+-..
T Consensus 291 ly~~~~e~d~A~~---tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~-----~~ld~~r~ 362 (449)
T 1b89_A 291 LYDKYEEYDNAII---TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLS-----PRLDHTRA 362 (449)
T ss_dssp HHHHTTCHHHHHH---HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHG-----GGCCHHHH
T ss_pred HHHhhchHHHHHH---HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----hccCcHHH
Confidence 9999999998886 444421 11122333333221122222223333332 2221 11111223
Q ss_pred HHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHH
Q 038401 477 LSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIM 528 (542)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 528 (542)
+..+.+.|+..-+..+++.+... + ....-..+-++|...++++.=..-.
T Consensus 363 v~~~~~~~~l~l~~~yl~~v~~~-n--~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 363 VNYFSKVKQLPLVKPYLRSVQNH-N--NKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHHHTTCTTTTHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHh-h--HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34445555555555555555432 1 3456667777888887776544443
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.1e-17 Score=156.05 Aligned_cols=263 Identities=10% Similarity=-0.035 Sum_probs=133.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHh
Q 038401 56 TYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFG 135 (542)
Q Consensus 56 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (542)
.|..+...+.+.|++++|++.|+++.+..+ .+...+..+..++...|++++|...|+++.+.. +.+..++..+..++.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344455555555555555555555544422 244455555555555555555555555554432 223444555555555
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCC-CChhhHHHHHHH
Q 038401 136 KAKLFKEARLLIEEMREQGVKPD-----------TVSYSTLLNLYVENHKFVEALSVFAEMNEVNCP-LDLTTCNIMIDV 203 (542)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~g~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 203 (542)
..|++++|...++++.+.. |+ ...+..+...+...|++++|.+.++++.+.... ++..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 5555555555555554431 11 112223345555556666666666655554311 135555555566
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHH
Q 038401 204 YGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKA 283 (542)
Q Consensus 204 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 283 (542)
+...|++++|...++++.+.. +.+..++..+..++...|++++|...|+.+.+.. +.+..++..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 666666666666666655543 3345556666666666666666666666655543 22455566666666666666666
Q ss_pred HHHHHHHHHcCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038401 284 TNLMQEMQNRGI---E--------PNAITYSTIIAIWGKAGKLDRAAMLFQK 324 (542)
Q Consensus 284 ~~~~~~~~~~~~---~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (542)
...++++.+... . .+...|..+..++...|+.+.+..+...
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 666666544310 0 0234566666666666776666665543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=5.1e-18 Score=155.58 Aligned_cols=278 Identities=8% Similarity=-0.001 Sum_probs=192.0
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038401 230 VSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIW 309 (542)
Q Consensus 230 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 309 (542)
..+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345556666667777777777777766653 3355666666667777777777777777766552 33455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHH-HH-HHHHhCCHHHHHHH
Q 038401 310 GKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETA-IT-ILARAGRIEEATWV 387 (542)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~ 387 (542)
...|++++|...++.+.+... .+...+..+...+ +.......+ .. .+...|++++|...
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 677777777777766665431 1222222111100 000000011 12 35677899999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC
Q 038401 388 FRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCV 467 (542)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 467 (542)
++++++.. +.+...+..++..+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++++.+..
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-- 236 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-- 236 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 99998874 3578899999999999999999999999998843 2357889999999999999999999999999876
Q ss_pred CchHHHHH-HHHHHhccCChHHHHHHHHHH-hcCCCC---C-------chhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 468 FSDQVHFQ-MLSLYGARKDFNMLESLFERL-DSDSNI---N-------KKELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 468 ~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~---~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
+.+...+. ++.++...|++++|.+.+++. ...|.. . ....|..++.+|...|++++|..++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22333344 999999999999999999994 333331 0 35788999999999999999999987643
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=2.2e-17 Score=147.38 Aligned_cols=272 Identities=11% Similarity=0.083 Sum_probs=149.9
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038401 240 GEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAA 319 (542)
Q Consensus 240 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 319 (542)
...|++..|+...+........+.......+.++|...|+++.|+..++.. -+|+..++..+...+...++.+.|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 345566666655554433211111223344455666666666665544331 2344455555555666666666666
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc
Q 038401 320 MLFQKLRSSGV-EIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVK 398 (542)
Q Consensus 320 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 398 (542)
+.++++...+. +.+...+..+...+...|++++|.+.+++ ..+...+..++.++.+.|++++|.+.|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 66666655442 22344455555566666666666666655 2233334445556666677777777777766653 2
Q ss_pred CHH-H--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH
Q 038401 399 DIS-V--FGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ 475 (542)
Q Consensus 399 ~~~-~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 475 (542)
+.. . ...++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|...++++++.. |.+...+.
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~l~ 238 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPETLI 238 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 211 1 112223334457777777777777764 23456677777777777777777777777777765 22233333
Q ss_pred -HHHHHhccCChHH-HHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHHHH
Q 038401 476 -MLSLYGARKDFNM-LESLFERL-DSDSNINKKELHHVVAGIYERANRLNDASRIM 528 (542)
Q Consensus 476 -l~~~~~~~g~~~~-A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 528 (542)
++.++...|+.++ +.++++++ ..+|+.. .+.+...+.+.+++|..-|
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~------~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP------FIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHHHHHc
Confidence 6777777777765 45677663 3444421 2234455555555555433
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.3e-17 Score=148.91 Aligned_cols=241 Identities=9% Similarity=0.111 Sum_probs=145.5
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 038401 234 TLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEP-NAITYSTIIAIWGKA 312 (542)
Q Consensus 234 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 312 (542)
.+..+|...|+++.|+..++.. .+|+..++..+...+...++.++|++.++++...+..| +...+..+...+...
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 3444555555555555433221 13344445555555555555555555555555443323 233334444455555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCH-HHHH----HHHHHhCCHHHHHHH
Q 038401 313 GKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPR-ETAI----TILARAGRIEEATWV 387 (542)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~l~----~~~~~~g~~~~A~~~ 387 (542)
|++++|+..++. +.+...+..++..+.+.|++++|.+.++++...++... ..+. ..+...|++++|..+
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 555555555544 23445555555555555555555555555543222221 1111 222344888999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHH-HHHHHHHHHHcC
Q 038401 388 FRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFET-ADDLYSEMQEEG 465 (542)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 465 (542)
|+++++. .+.++..++.++.++.+.|++++|+..|+++++. .| +..++..++..+...|+.++ +.++++++.+.+
T Consensus 189 ~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 189 FQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999887 4578899999999999999999999999999884 35 66888889999999999876 678999999877
Q ss_pred CCCchHHHHHHHHHHhccCChHHHHHH
Q 038401 466 CVFSDQVHFQMLSLYGARKDFNMLESL 492 (542)
Q Consensus 466 ~~~~~~~~~~l~~~~~~~g~~~~A~~~ 492 (542)
|+.... .....+.+.++++..-
T Consensus 266 ---P~~~~~--~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 266 ---RSHPFI--KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp ---TTCHHH--HHHHHHHHHHHHHHHH
T ss_pred ---CCChHH--HHHHHHHHHHHHHHHH
Confidence 443332 3344455555555543
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=6.1e-17 Score=148.39 Aligned_cols=265 Identities=11% Similarity=0.012 Sum_probs=176.5
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038401 18 SVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIE 97 (542)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 97 (542)
+...+..+...+.+.|++++|..+|+.+.+.... +..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 3445677888899999999999999999887533 77888899999999999999999999998874 336778888999
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHH--------------HH-HHhccCcHHHHHHHHHHHHHcCCCCCHHHH
Q 038401 98 LARKLSDYSKAISIFSRLKSSGIVPDLVAYNTM--------------IN-VFGKAKLFKEARLLIEEMREQGVKPDTVSY 162 (542)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 162 (542)
.+...|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999988763 2233333333 22 2556667777777777766653 2256666
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 038401 163 STLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEA 242 (542)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 242 (542)
..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 666777777777777777777666543 3345556666666666666666666666665543 33445555556666666
Q ss_pred CcHHHHHHHHHHHHhcCCCC-----------cHHHHHHHHHHHHccCCHHHHHHHHH
Q 038401 243 ELFGEAIHLFRLMQRKEIEQ-----------NVVTYNTMIKIYGKSLEHEKATNLMQ 288 (542)
Q Consensus 243 ~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (542)
|++++|.+.++......... +...|..+..++.+.|+.++|..+++
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66666666666555442111 34455555555555555555555544
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.3e-16 Score=151.40 Aligned_cols=386 Identities=11% Similarity=0.003 Sum_probs=219.7
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHHhC--------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhC-----C
Q 038401 53 DRYTYSTLITCFGKEGMFDSAISWLQQMEQD--------RVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSS-----G 119 (542)
Q Consensus 53 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 119 (542)
....|+.+...+...|++++|++.|++..+. ..+....+|..+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4557888888888899999999888876542 11223567888888888999999998888876542 1
Q ss_pred -C-CccHhHHHHHHHHHhc--cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHCCChHHHHHHHHHHHhcCCCC
Q 038401 120 -I-VPDLVAYNTMINVFGK--AKLFKEARLLIEEMREQGVKPDTVSYSTLLNL---YVENHKFVEALSVFAEMNEVNCPL 192 (542)
Q Consensus 120 -~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~ 192 (542)
. .....++..+..++.. .+++++|...|++..+.. +-+...+..+..+ +...++.++|++.+++..+.+ +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 0 1124455555444443 457889999999888763 2244455444444 345677788888888887764 33
Q ss_pred ChhhHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHH
Q 038401 193 DLTTCNIMIDVYG----QLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYN 268 (542)
Q Consensus 193 ~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 268 (542)
+..++..+...+. ..+++++|.+.+++..... +.+..++..+...+...|++++|...+++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 5555555544443 3456778888888887765 5566778888888889999999999998888764 33555666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 038401 269 TMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVG 348 (542)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (542)
.+...|...+.. ..... . ..........+..+.|...++...+.. +.+...+..+...+...|
T Consensus 286 ~lg~~y~~~~~~---------~~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQ---------VMNLR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH---------hhhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 665555321110 00000 0 000000111123455666666665543 234445556666666666
Q ss_pred CHHHHHHHHHHhcCCCCCCHH------HHHH-HHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038401 349 LVAHAKRLLHELRQPNTIPRE------TAIT-ILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIE 421 (542)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~------~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 421 (542)
++++|...|++....++.+.. .+.. .....|++++|+..|+++++.. |+..... +....+..
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHH
Confidence 676666666665433322211 1111 1235678888888888888753 3322211 22334455
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH
Q 038401 422 VFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ 471 (542)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 471 (542)
++++.++.+ +.+..+|..++..|...|++++|++.|+++++.+...|+.
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 666666532 2356778888888888888888888888888877544443
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.73 E-value=9.7e-16 Score=146.03 Aligned_cols=217 Identities=11% Similarity=0.077 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHhcCCCCCCHHHHHH
Q 038401 301 TYSTIIAIWGKAG---KLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERV----GLVAHAKRLLHELRQPNTIPRETAIT 373 (542)
Q Consensus 301 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~l~~ 373 (542)
.+..+...|...| +.++|+..|+...+.| +++...+..+...|... +++++|..+|++....++.....+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQ 256 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444444555555 5555555555555554 33344333444444332 45555555555554222222333333
Q ss_pred H-H--HHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038401 374 I-L--ARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNK-----KYANVIEVFEKMRSAGYFPDSHIIALVLNSY 445 (542)
Q Consensus 374 ~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 445 (542)
+ + ...+++++|...|+++.+.| ++..+..|...|. .| ++++|+..|++.. . -+...+..+...|
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIY 328 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHH
Confidence 3 2 34567777777777777654 4556666666665 44 7777777777666 2 3455566666666
Q ss_pred hc----cCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhc----cCChHHHHHHHHHHhcCCCCCchhHHHHHHHHH--
Q 038401 446 GK----LREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGA----RKDFNMLESLFERLDSDSNINKKELHHVVAGIY-- 515 (542)
Q Consensus 446 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-- 515 (542)
.. ..+.++|..+|+++.+.+ .....+.++.+|.. ..+.++|..++++....++ ..+-..+..+.
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~---~~a~~~l~~l~~~ 402 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT---PEANDLATQLEAP 402 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC---HHHHHHHHHHHTT
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHh
Confidence 55 337777777777777765 22334446666553 4577777777777554433 12222333332
Q ss_pred HhhcchhhHHHHHHHHH
Q 038401 516 ERANRLNDASRIMNRMN 532 (542)
Q Consensus 516 ~~~g~~~~A~~~~~~~~ 532 (542)
...++.++|.++.++-.
T Consensus 403 ~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 403 LTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 22345556666666533
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.1e-15 Score=134.83 Aligned_cols=219 Identities=11% Similarity=0.039 Sum_probs=122.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC----HHHHHHH
Q 038401 267 YNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVE--ID----PVLYQTM 340 (542)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 340 (542)
+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...++.+.+.... ++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444444444444444444444443 33444444444444444444444444444432110 01 2344444
Q ss_pred HHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038401 341 IVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVI 420 (542)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 420 (542)
..++...|++++|...+++....++. ...+...|++++|...++++.+.. +.+...+..++..+...|++++|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHH
Confidence 44444444444444444443321111 233455566677777777766642 234566777777777777788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH
Q 038401 421 EVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 496 (542)
..++++.+.. +.+..++..++.+|...|++++|...++++++.. +.+...+. ++.++...|++++|...+++.
T Consensus 160 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 160 KAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777632 2245667777777777777777777777777765 22233333 777777777777777777773
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=6.7e-16 Score=131.62 Aligned_cols=193 Identities=11% Similarity=0.034 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCC---HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 038401 333 DPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIP---RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIEL 409 (542)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (542)
+...+..+...+.+.|++++|...+++....++.. +..+..++.+.|++++|+..++++++.. +.+...+..+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 44444555555555555555555555554433322 3334455566666666777777776653 3466777777888
Q ss_pred HHhc-----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 038401 410 FSRN-----------KKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQML 477 (542)
Q Consensus 410 ~~~~-----------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 477 (542)
+... |++++|+..|++.++. .| +...+..+..++...|++++|+..|+++++.+ ......+.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 8877 8888888888888873 45 45777788888888888888888888888876 2333344488
Q ss_pred HHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 478 SLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
.++...|++++|+..+++ +...|+ ....+..++.++...|++++|+..+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK--DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888888888888888 444554 45678888888888888888888887754
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=161.44 Aligned_cols=163 Identities=17% Similarity=0.245 Sum_probs=131.6
Q ss_pred HHhHHHHHHHHhccCCHHHHHHHHHHHHh---CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHH
Q 038401 54 RYTYSTLITCFGKEGMFDSAISWLQQMEQ---DRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTM 130 (542)
Q Consensus 54 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 130 (542)
..+|+++|.+|++.|++++|.++|.+|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCc-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCC------hhhHHHHHHH
Q 038401 131 INVFGKAKL-FKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLD------LTTCNIMIDV 203 (542)
Q Consensus 131 ~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 203 (542)
|.++++.|+ .+.|.++|++|.+.|+.||..+|+.++..+.+. .+++.++++ ..+..|+ ..+...+.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999997 578999999999999999999999988655443 334444444 2233333 5566677777
Q ss_pred HhccCC---------HHHHHHHHHHHH
Q 038401 204 YGQLDM---------AKDADRLFWSMR 221 (542)
Q Consensus 204 ~~~~~~---------~~~a~~~~~~~~ 221 (542)
|.+.+. .++..+.|++-.
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHHH
Confidence 776652 355555555533
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=7.8e-15 Score=139.78 Aligned_cols=379 Identities=12% Similarity=0.083 Sum_probs=167.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCH---HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 038401 25 VLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMF---DSAISWLQQMEQDRVSGDLVLYSNLIELARK 101 (542)
Q Consensus 25 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (542)
+...+.+.|++++|.++|+...+.| ++..+..+...|...|+. ++|+++|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555666677777777777766654 333344455555555555 6666666666543 33344444443333
Q ss_pred cC-----CHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Q 038401 102 LS-----DYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFK---EARLLIEEMREQGVKPDTVSYSTLLNLYVENH 173 (542)
Q Consensus 102 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 173 (542)
.+ ++++|...|++..+.|. ...+..|...|...+..+ .+.+.+......| +...+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 33 55566666666665441 123444444444333221 2233333333322 2223334444444444
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC---cHHHHHH
Q 038401 174 KFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAE---LFGEAIH 250 (542)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~ 250 (542)
.++++.+.... +++... ..++..+..+...|...| +.++|++
T Consensus 156 ~~~~~~~~a~~-------------------------------~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 156 TYDQHLDDVER-------------------------------ICKAAL----NTTDICYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp CGGGGHHHHHH-------------------------------HHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcccCHHHHHH-------------------------------HHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHH
Confidence 33333222222 221111 112223444444444444 4444555
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHH
Q 038401 251 LFRLMQRKEIEQNVVTYNTMIKIYGKS----LEHEKATNLMQEMQNRGIEPNAITYSTIIAI-W--GKAGKLDRAAMLFQ 323 (542)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~ 323 (542)
.|+...+.| .++...+..+...|... ++.++|...|++.. .| ++..+..+... + ...+++++|...|+
T Consensus 201 ~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 201 QMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 444444443 22333333344444332 44555555555544 22 22233333333 2 23455555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHhcCCCCCCHHHHHHHHHH----hCCHHHHHHHHHHHHHc
Q 038401 324 KLRSSGVEIDPVLYQTMIVAYERVG-----LVAHAKRLLHELRQPNTIPRETAITILAR----AGRIEEATWVFRQAFDA 394 (542)
Q Consensus 324 ~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 394 (542)
+..+.| ++..+..+...|. .| ++++|.++|++....++.....+..+|.. ..++++|...|+++.+.
T Consensus 276 ~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 276 NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 555443 3444444444444 33 55555555555541112222223333333 23777788888887776
Q ss_pred CCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038401 395 GEVKDISVFGCMIELFSR----NKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 395 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 464 (542)
|. +.....|...|.. ..++.+|...|++..+.|. ++.......+......++.++|....++..+.
T Consensus 352 g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 352 GQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred Ch---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 53 3344556666653 4578888888888887663 23333333333334556777788887776664
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=161.24 Aligned_cols=150 Identities=11% Similarity=0.165 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh---CCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 038401 19 VFAYNVVLRNVLRAKQWELAHGLFDEMRQ---RGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNL 95 (542)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 95 (542)
..+||++|++|++.|++++|..+|+.|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC------HHHHHHHHHH
Q 038401 96 IELARKLSD-YSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPD------TVSYSTLLNL 168 (542)
Q Consensus 96 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~l~~~ 168 (542)
|.++++.|+ .+.|.++|++|.+.|+.||..+|+.++....+.+ .++.++++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 4789999999999999999999999886554433 33334333 2334433 3444455555
Q ss_pred HHHCC
Q 038401 169 YVENH 173 (542)
Q Consensus 169 ~~~~g 173 (542)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 55544
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=4e-15 Score=132.24 Aligned_cols=224 Identities=16% Similarity=0.150 Sum_probs=118.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC--CCCCC----HHHHHHHHHHhC
Q 038401 306 IAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ--PNTIP----RETAITILARAG 379 (542)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~----~~~l~~~~~~~g 379 (542)
...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++... .++.. +..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 334444445555555554444432 12233444444444455555555555444433 11122 334455555556
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHH
Q 038401 380 RIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLY 458 (542)
Q Consensus 380 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 458 (542)
++++|++.|+++++.. +.+...+..++.+|...|++++|+..|+++++. .| +...+..++..+...+++++|...+
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666542 234556666666777777777777777666653 23 3455555552333344777777777
Q ss_pred HHHHHcCCCCchHHHHH-HHHHHhccCC---hHHHHHHHHHHhcC----CCCC---chhHHHHHHHHHHhhcchhhHHHH
Q 038401 459 SEMQEEGCVFSDQVHFQ-MLSLYGARKD---FNMLESLFERLDSD----SNIN---KKELHHVVAGIYERANRLNDASRI 527 (542)
Q Consensus 459 ~~~~~~~~~~~~~~~~~-l~~~~~~~g~---~~~A~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~ 527 (542)
+++.+.. |.+...+. ++.++...|+ +++|...+++.... |+.. ....|..++.+|...|++++|.++
T Consensus 166 ~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776655 11122222 5566665565 66666666663211 2110 014566677777777777777777
Q ss_pred HHHHHhcC
Q 038401 528 MNRMNKRR 535 (542)
Q Consensus 528 ~~~~~~~~ 535 (542)
++++.+..
T Consensus 244 ~~~al~~~ 251 (272)
T 3u4t_A 244 WKNILALD 251 (272)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 77766654
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=3.7e-14 Score=126.00 Aligned_cols=229 Identities=10% Similarity=0.062 Sum_probs=144.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038401 263 NVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGK----AGKLDRAAMLFQKLRSSGVEIDPVLYQ 338 (542)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (542)
+..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+.+ ++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45556666666666677777777776666532 44555556666666 666777777776666653 445555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cC
Q 038401 339 TMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSR----NK 414 (542)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 414 (542)
.+...|.... ...+++++|+..|+++.+.+ ++..+..+...|.. .+
T Consensus 79 ~lg~~~~~g~---------------------------~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 79 LLGNLYYSGQ---------------------------GVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HHHHHHHHTS---------------------------SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHhCCC---------------------------CcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 5555444400 00455555555666665542 55666677777777 77
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhc----cCCh
Q 038401 415 KYANVIEVFEKMRSAGYFPDSHIIALVLNSYGK----LREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGA----RKDF 486 (542)
Q Consensus 415 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 486 (542)
++++|+..|++..+.+ +...+..+...|.. .+++++|..+|+++.+.+ +....+.++.+|.. .+++
T Consensus 129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 7777777777777644 44556666666666 777777777777777764 33344447777777 7777
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHh----hcchhhHHHHHHHHHhcCC
Q 038401 487 NMLESLFERLDSDSNINKKELHHVVAGIYER----ANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 487 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 536 (542)
++|+.++++..... +...+..++.+|.. .|++++|++++++..+.|.
T Consensus 203 ~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 203 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77777777744332 24566777777777 7777777777777776653
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=5.2e-15 Score=126.08 Aligned_cols=199 Identities=16% Similarity=0.031 Sum_probs=119.5
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 038401 16 SPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNL 95 (542)
Q Consensus 16 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 95 (542)
++++..+..+...+.+.|++++|...|+...+..+. +...+..+..++.+.|++++|+..+++..+..+ .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 466677777778888888888888888888776433 667777788888888888888888888777643 256677777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038401 96 IELARKL-----------SDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYST 164 (542)
Q Consensus 96 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 164 (542)
..++... |++++|...+++..+.. +.+...+..+..++...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777776 66666666666665542 2245555555566666666666666666665554 45555566
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038401 165 LLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSM 220 (542)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (542)
+..+|...|++++|...|++..+.. |.+...+..+...+...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666655543 334455555555566666666665555543
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.1e-14 Score=128.14 Aligned_cols=225 Identities=12% Similarity=0.060 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--C----HHhH
Q 038401 19 VFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSG--D----LVLY 92 (542)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~ 92 (542)
...|..+...+...|++++|...|+.+.+.. .+..+|..+..++...|++++|++.+++..+..+.. + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777777888888888888888887776 577778888888888888888888888776643211 1 4666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Q 038401 93 SNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVEN 172 (542)
Q Consensus 93 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 172 (542)
..+...+...|++++|...|++..+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 77777777777777777777777764 3332 23444566677777777766542 12344556666666666
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHH
Q 038401 173 HKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLF 252 (542)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 252 (542)
|++++|.+.+++..+.. +.+..++..+...+...|++++|...++...+.. +.+..++..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66766666666666543 3345556666666666666666666666665543 334455555555566666666666665
Q ss_pred HHHHh
Q 038401 253 RLMQR 257 (542)
Q Consensus 253 ~~~~~ 257 (542)
+...+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 45
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=4.3e-12 Score=124.88 Aligned_cols=432 Identities=13% Similarity=0.123 Sum_probs=253.2
Q ss_pred hHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCC---HHHHHHHHHHHHh
Q 038401 6 LDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGM---FDSAISWLQQMEQ 82 (542)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~ 82 (542)
|+....+. +-|...|..++..+.+.+.++.+..+|+++... .+.+...|...+..-.+.|+ ++.+..+|++...
T Consensus 55 lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 55 LNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 44444343 568888999999988889999999999999887 45577788888888888888 9999999999887
Q ss_pred CC-CCCCHHhHHHHHHHHHhcCCH--------HHHHHHHHHhHh-CCC-Cc-cHhHHHHHHHHHhc---------cCcHH
Q 038401 83 DR-VSGDLVLYSNLIELARKLSDY--------SKAISIFSRLKS-SGI-VP-DLVAYNTMINVFGK---------AKLFK 141 (542)
Q Consensus 83 ~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~~~~ 141 (542)
.. .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+..... .++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 63 137888888877766665543 334467776553 355 44 35677777765432 34567
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038401 142 EARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMR 221 (542)
Q Consensus 142 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 221 (542)
.+..+|+.........-..+|......-...+. ..+.+++.+. ..+++.|...+..+.
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~ 269 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARSLYQDWL 269 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHHHHHHHH
Confidence 788888887753111112233222111100010 0111111110 001122222222211
Q ss_pred HC--CC----C-----------C-----C---hhHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcCCCCcHHHHHH
Q 038401 222 KM--GI----D-----------P-----S---VVSYNTLLRVYGEAE-------LFGEAIHLFRLMQRKEIEQNVVTYNT 269 (542)
Q Consensus 222 ~~--~~----~-----------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ 269 (542)
.. ++ + | + ...|...+.---..+ ..+.+..+|++.... .+.+...|..
T Consensus 270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ 348 (679)
T 4e6h_A 270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFN 348 (679)
T ss_dssp HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHH
T ss_pred HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 00 00 0 0 0 122333333222211 123445566666654 2345666766
Q ss_pred HHHHHHccCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCC-------
Q 038401 270 MIKIYGKSLEHEKAT-NLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSG---------VEI------- 332 (542)
Q Consensus 270 l~~~~~~~~~~~~a~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~------- 332 (542)
.+..+...|+.++|. .+|++.... ++.+...|...+......|+++.|..+|+.+++.. ..|
T Consensus 349 ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 349 MANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 666666667777775 777776654 23344455566666667777777777777766531 012
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC-CCCCHHHH---HHHHHHh-CCHHHHHHHHHHHHHcCCCcCHHH
Q 038401 333 -----DPVLYQTMIVAYERVGLVAHAKRLLHELRQP-NTIPRETA---ITILARA-GRIEEATWVFRQAFDAGEVKDISV 402 (542)
Q Consensus 333 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l---~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~ 402 (542)
...+|...+....+.|+.+.|..+|....+. ....+... +..-.+. ++.+.|..+|+..++. .+.++..
T Consensus 428 ~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~ 506 (679)
T 4e6h_A 428 QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHH
T ss_pred hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHH
Confidence 1235666777667777777888887776543 22222222 2222233 3478888888888776 4456777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 403 FGCMIELFSRNKKYANVIEVFEKMRSAGYFP--DSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 403 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
|...+......|+.+.|..+|++++.....+ ....|...+..-.+.|+.+.+.++.+++.+..
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777888888888888887743222 23567777766677888888888888888876
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=4.1e-12 Score=124.99 Aligned_cols=440 Identities=9% Similarity=0.054 Sum_probs=288.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHH
Q 038401 36 ELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSD---YSKAISIF 112 (542)
Q Consensus 36 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 112 (542)
.+.+..|+..+..++ -|..+|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.++ ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 345556666666654 48889999999998889999999999999887 55677888888888888888 99999999
Q ss_pred HHhHhCC-CCccHhHHHHHHHHHhccCcH--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHHH---------
Q 038401 113 SRLKSSG-IVPDLVAYNTMINVFGKAKLF--------KEARLLIEEMRE-QGV-KP-DTVSYSTLLNLYVE--------- 171 (542)
Q Consensus 113 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~l~~~~~~--------- 171 (542)
++..... .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9988763 137888888877665554432 344577776554 355 44 35677776665432
Q ss_pred CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHH
Q 038401 172 NHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHL 251 (542)
Q Consensus 172 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 251 (542)
.++.+.+..+|+.+.......-..+|......-...+. ..+.+++.+ ...+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHH
Confidence 33466777888887753211111222222111100000 001111111 11233444444
Q ss_pred HHHHHhc--CC----C-----------C--------cHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCCH
Q 038401 252 FRLMQRK--EI----E-----------Q--------NVVTYNTMIKIYGKSL-------EHEKATNLMQEMQNRGIEPNA 299 (542)
Q Consensus 252 ~~~~~~~--~~----~-----------~--------~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~p~~ 299 (542)
+.++... ++ + | ....|...+..--..+ ..+.+..+|++.... ++-+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 4443211 11 0 1 0245666665443332 134566788888776 24477
Q ss_pred HHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC-----------CC--
Q 038401 300 ITYSTIIAIWGKAGKLDRAA-MLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQP-----------NT-- 365 (542)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~-- 365 (542)
..|...+..+...|+.+.|. .+|++.... ++.+...+...+....+.|++++|..+|+.+... .+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 88888888888889999997 999999875 4667888888899999999999999999987641 11
Q ss_pred ------------CCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC
Q 038401 366 ------------IPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRN-KKYANVIEVFEKMRSAGYF 432 (542)
Q Consensus 366 ------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 432 (542)
..|...+....+.|+.+.|..+|.++++.........|...+..-.+. ++++.|..+|+..++. ++
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p 501 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FA 501 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HT
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CC
Confidence 135555677778899999999999999861122334444433333344 4599999999999985 33
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCc-hHHHHH-HHHHHhccCChHHHHHHHHHH-hcCCCC
Q 038401 433 PDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFS-DQVHFQ-MLSLYGARKDFNMLESLFERL-DSDSNI 502 (542)
Q Consensus 433 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 502 (542)
-+...|...+......|+.+.|+.+|++++.....+. ....+. ++..-...|+.+.+.++.+++ ...|..
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3567777888888889999999999999998762111 223333 777788899999999999995 445543
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=1e-14 Score=134.46 Aligned_cols=225 Identities=10% Similarity=0.073 Sum_probs=146.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhcCCC---CCCHHHHHHHHHH
Q 038401 302 YSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGL-VAHAKRLLHELRQPN---TIPRETAITILAR 377 (542)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~---~~~~~~l~~~~~~ 377 (542)
|..+...+...|++++|+..++++++.. +-+...|..+..++...|+ +++|+..++++...+ ...|..+..++..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3333344444444444444444444432 2234444444444444443 555555544443322 2223344455556
Q ss_pred hCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhc-cCcHHHH-
Q 038401 378 AGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGK-LREFETA- 454 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~~A- 454 (542)
.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|+++++. .| +...|..+..++.. .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 677777777777777763 457888888999999999999999999999884 35 56788888888888 5665777
Q ss_pred ----HHHHHHHHHcCCCCchHHHHH-HHHHHhccC--ChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhc--------
Q 038401 455 ----DDLYSEMQEEGCVFSDQVHFQ-MLSLYGARK--DFNMLESLFERLDSDSNINKKELHHVVAGIYERAN-------- 519 (542)
Q Consensus 455 ----~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 519 (542)
+..++++++.. |.+...+. ++.++...| ++++|.+.++++.. ++....++..++++|...|
T Consensus 256 ~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~--~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQP--SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 58888988876 22333343 788888887 68899998888833 3335678888999998875
Q ss_pred -chhhHHHHHHHH-Hhc
Q 038401 520 -RLNDASRIMNRM-NKR 534 (542)
Q Consensus 520 -~~~~A~~~~~~~-~~~ 534 (542)
.+++|+++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 358899999987 554
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=1.8e-14 Score=127.98 Aligned_cols=247 Identities=14% Similarity=0.078 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 038401 231 SYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPN--AITYSTIIAI 308 (542)
Q Consensus 231 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~ 308 (542)
.+......+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.+-.|+ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445556666677777777777666553 22344566666666666777777776666665321111 2235566666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHH
Q 038401 309 WGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVF 388 (542)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (542)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al--------------------------- 135 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI--------------------------- 135 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---------------------------
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh---------------------------
Confidence 666666666666666666543 2244555555555555555555555555544
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCc---HHHHHHHHHHHHHc
Q 038401 389 RQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD-SHIIALVLNSYGKLRE---FETADDLYSEMQEE 464 (542)
Q Consensus 389 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 464 (542)
+. .+.+...|..++..+...+++++|++.|+++.+. .|+ ...+..+..++...|+ +++|...++++.+.
T Consensus 136 ----~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 136 ----RP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp ----CS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred ----hc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 33 2234555555552333344666666666666652 233 4555555666655565 66666666666654
Q ss_pred CCCCchH------HHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHH
Q 038401 465 GCVFSDQ------VHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIY 515 (542)
Q Consensus 465 ~~~~~~~------~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~ 515 (542)
....|+. ..+. ++.+|...|++++|.+.+++ +..+|+ +..++..+..+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~l~~~~ 265 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT--NKKAIDGLKMKL 265 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHC---
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc--HHHHHHHhhhhh
Confidence 2111221 1222 66666677777777777776 344444 334444444433
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=2.3e-14 Score=127.51 Aligned_cols=245 Identities=9% Similarity=-0.085 Sum_probs=111.1
Q ss_pred cCcHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHH
Q 038401 137 AKLFKEARLLIEEMREQGVK---PDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDA 213 (542)
Q Consensus 137 ~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 213 (542)
.|++++|...++++.+.... .+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34555555555555543210 123344455555555555555555555555443 22444555555555555555555
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038401 214 DRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNR 293 (542)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (542)
...++++.... +.+..++..+..++...|++++|...++.+.+.. |+.......+..+...|++++|...+.+....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 55555555442 2234455555555555555555555555555432 22222222333334445555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHH
Q 038401 294 GIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVE---IDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRET 370 (542)
Q Consensus 294 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (542)
. +++...+ .++..+...++.+.|...+....+.... .+...+..+..++.+.|++++|...+++....++..+..
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 2 2222222 2444444555555555555555433110 012344444444445555555555444444433333333
Q ss_pred HHHHHHHhCCHHHHHHH
Q 038401 371 AITILARAGRIEEATWV 387 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~ 387 (542)
...++...|++++|++.
T Consensus 252 ~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 252 HRYALLELSLLGQDQDD 268 (275)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 33334444444444433
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=2.2e-14 Score=127.62 Aligned_cols=218 Identities=9% Similarity=-0.032 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC---CCCCCHHHHHHHHHH
Q 038401 301 TYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQ---PNTIPRETAITILAR 377 (542)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 377 (542)
.+..+...+...|++++|...|+.+.+.. +.+...+..+..++...|++++|...++++.. .+...+..+..++..
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 33444444444444444444444444432 22344444444444444555555444444432 122233444555666
Q ss_pred hCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 038401 378 AGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDL 457 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 457 (542)
.|++++|...++++++.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...
T Consensus 124 ~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHH
Confidence 677777777777777653 222233333444566789999999998877642 2333334 366677778888899999
Q ss_pred HHHHHHcCCCC-ch-HHHHH-HHHHHhccCChHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHhhcchhhHHHHH
Q 038401 458 YSEMQEEGCVF-SD-QVHFQ-MLSLYGARKDFNMLESLFERLDS-DSNINKKELHHVVAGIYERANRLNDASRIM 528 (542)
Q Consensus 458 ~~~~~~~~~~~-~~-~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 528 (542)
++++.+..... |. ...+. ++.++...|++++|...+++... .|.. +...+.++...|++++|++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-----FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-----CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-----HHHHHHHHHHHHHHHhhHHHH
Confidence 98887654110 11 23333 88999999999999999999543 3321 233466788889999998876
No 51
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=4.7e-14 Score=132.07 Aligned_cols=225 Identities=15% Similarity=0.103 Sum_probs=152.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhcC---CCC-------CCHHHH
Q 038401 307 AIWGKAGKLDRAAMLFQKLRSS----GVEI-DPVLYQTMIVAYERVGLVAHAKRLLHELRQ---PNT-------IPRETA 371 (542)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-------~~~~~l 371 (542)
..+...|++++|...++...+. +.++ ...++..+...|...|++++|...+.+... ... ..+..+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445556666666666665442 1011 134455555556666666666666555432 111 123344
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCC-c----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHH
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEV-K----DISVFGCMIELFSRNKKYANVIEVFEKMRSA----GYFP-DSHIIALV 441 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l 441 (542)
...+...|++++|+..++++++.... + ...++..++.+|...|++++|+..+++.++. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 56667777888888877777653111 1 1347888999999999999999999999862 2223 35778899
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCC--CchH-HHHH-HHHHHhccCC---hHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038401 442 LNSYGKLREFETADDLYSEMQEEGCV--FSDQ-VHFQ-MLSLYGARKD---FNMLESLFERLDSDSNINKKELHHVVAGI 514 (542)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~-~~~~-l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 514 (542)
+..|...|++++|...++++.+.... .|.. ..+. ++.++...|+ +++|...+++....+. ....+..++.+
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~--~~~~~~~la~~ 348 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD--LEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHH--HHHHHHHHHHH
Confidence 99999999999999999998875211 1222 2223 8889999999 8888888887743222 34678899999
Q ss_pred HHhhcchhhHHHHHHHHHh
Q 038401 515 YERANRLNDASRIMNRMNK 533 (542)
Q Consensus 515 ~~~~g~~~~A~~~~~~~~~ 533 (542)
|...|++++|..+++++.+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999765
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.6e-12 Score=115.34 Aligned_cols=223 Identities=13% Similarity=0.062 Sum_probs=132.1
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 038401 18 SVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGK----EGMFDSAISWLQQMEQDRVSGDLVLYS 93 (542)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 93 (542)
++.++..+...+...|++++|...|+...+.+ +..++..+...+.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45566666666777777777777777766632 44566666666666 677777777777766654 555666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038401 94 NLIELARK----LSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGK----AKLFKEARLLIEEMREQGVKPDTVSYSTL 165 (542)
Q Consensus 94 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 165 (542)
.+...+.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666666766666666543 45555566666665 666666666666666543 44455555
Q ss_pred HHHHHH----CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 038401 166 LNLYVE----NHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQ----LDMAKDADRLFWSMRKMGIDPSVVSYNTLLR 237 (542)
Q Consensus 166 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 237 (542)
...|.. .+++++|.+.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555 566666666666655543 34444555555555 555555555555555443 1334444444
Q ss_pred HHHh----cCcHHHHHHHHHHHHhc
Q 038401 238 VYGE----AELFGEAIHLFRLMQRK 258 (542)
Q Consensus 238 ~~~~----~~~~~~a~~~~~~~~~~ 258 (542)
.|.. .+++++|.+.|+...+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 4544 55555555555555444
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=3e-14 Score=134.95 Aligned_cols=277 Identities=13% Similarity=0.068 Sum_probs=168.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHHHH
Q 038401 232 YNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNV----VTYNTMIKIYGKSLEHEKATNLMQEMQNR----GI-EPNAITY 302 (542)
Q Consensus 232 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~ 302 (542)
+..+...+...|++++|...|+.+.+.... +. ..+..+...|...|++++|...+++..+. +. ......+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334445566667777777777766665322 22 35666666677777777777777665432 11 1123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhcCCCCCC
Q 038401 303 STIIAIWGKAGKLDRAAMLFQKLRSSG-----VEIDPVLYQTMIVAYERVGL----------VAHAKRLLHELRQPNTIP 367 (542)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~ 367 (542)
..+...+...|++++|...++++.+.. .+....++..+...|...|+ .++|...
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~----------- 198 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA----------- 198 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-----------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-----------
Confidence 666677777788888877777765431 01123345555555666666 1111111
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHH
Q 038401 368 RETAITILARAGRIEEATWVFRQAFDA----GE-VKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGY-FPD----SHI 437 (542)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~ 437 (542)
+++|++.++++++. +. ......+..+...+...|++++|+..+++..+... .++ ..+
T Consensus 199 -------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 199 -------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 33333333333221 11 12345677788888888899998888888875210 012 236
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCC--c--hHHHHH-HHHHHhccCChHHHHHHHHHHhcC----CC-CCchhH
Q 038401 438 IALVLNSYGKLREFETADDLYSEMQEEGCVF--S--DQVHFQ-MLSLYGARKDFNMLESLFERLDSD----SN-INKKEL 507 (542)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~--~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~ 507 (542)
+..++..|...|++++|...++++.+..... + ....+. ++.++...|++++|...+++.... ++ ......
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 7778888888999999999988887653110 0 122333 788888899999999888884221 11 011357
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 508 HHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 508 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
+..++.+|...|++++|..+++++.+
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888999999999999999888765
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=3.2e-13 Score=124.50 Aligned_cols=248 Identities=10% Similarity=0.122 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCC-HHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038401 19 VFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGM-FDSAISWLQQMEQDRVSGDLVLYSNLIE 97 (542)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 97 (542)
...|..+...+.+.|++++|+..++.+++.... +..+|+.+..++...|+ +++|+..|+++++..+. +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 456788888888899999999999999887543 67788888899999996 99999999999887543 7788888888
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-CCChH
Q 038401 98 LARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVE-NHKFV 176 (542)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~ 176 (542)
++...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999988764 4567888888888888899999999999988864 2367888888888888 56557
Q ss_pred HH-----HHHHHHHHhcCCCCChhhHHHHHHHHhccC--CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC------
Q 038401 177 EA-----LSVFAEMNEVNCPLDLTTCNIMIDVYGQLD--MAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAE------ 243 (542)
Q Consensus 177 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------ 243 (542)
+| ++.+++..... +-+...|+.+...+...| ++++|.+.+..+ +.. +.+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47777777754 346677877777787777 577888888777 332 445667777777777653
Q ss_pred ---cHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHH
Q 038401 244 ---LFGEAIHLFRLM-QRKEIEQNVVTYNTMIKIY 274 (542)
Q Consensus 244 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 274 (542)
..++|.++|+.+ .+.+ +.....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 257788888887 5442 22334455444443
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=2.4e-14 Score=135.33 Aligned_cols=300 Identities=12% Similarity=0.024 Sum_probs=166.2
Q ss_pred CCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-
Q 038401 226 DPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQN---VVTYNTMIKIYGKSLEHEKATNLMQEMQNR----GIEP- 297 (542)
Q Consensus 226 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p- 297 (542)
......+......+...|++++|...|+.......... ...+..+...+...|++++|...+++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455666777888899999999999999888742211 356778888899999999999999886543 2112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCC--------------------HHH
Q 038401 298 NAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVE-ID----PVLYQTMIVAYERVGL--------------------VAH 352 (542)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~ 352 (542)
....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2446777778888899999999998887653110 12 3466667777777777 666
Q ss_pred HHHHHHHhcC----CC-----CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHH
Q 038401 353 AKRLLHELRQ----PN-----TIPRETAITILARAGRIEEATWVFRQAFDAGEV-KD----ISVFGCMIELFSRNKKYAN 418 (542)
Q Consensus 353 a~~~~~~~~~----~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~ 418 (542)
|...+.+... .+ ...+..+...+...|++++|...++++++.... ++ ..++..++..+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 6666655432 00 011223344455555555555555555543110 11 1244455555555555555
Q ss_pred HHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC---Cch-HHHHH-HHHHHhccCChHH
Q 038401 419 VIEVFEKMRSAGY-FPD----SHIIALVLNSYGKLREFETADDLYSEMQEEGCV---FSD-QVHFQ-MLSLYGARKDFNM 488 (542)
Q Consensus 419 A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~-~~~~~-l~~~~~~~g~~~~ 488 (542)
|+..+++..+... .++ ..++..++..|...|++++|...++++.+.... ++. ...+. ++.++...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555554210 011 234445555555555555555555555443100 011 11122 4555555555555
Q ss_pred HHHHHHHHh-cCCCCCc----hhHHHHHHHHHHhhcchhhHH
Q 038401 489 LESLFERLD-SDSNINK----KELHHVVAGIYERANRLNDAS 525 (542)
Q Consensus 489 A~~~~~~~~-~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 525 (542)
|...+++.. ..+.... ...+..++.+|...|+...+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 555555532 2222111 133444555555555544433
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.61 E-value=4.8e-14 Score=129.51 Aligned_cols=280 Identities=13% Similarity=0.089 Sum_probs=183.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHH
Q 038401 231 SYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQN----VVTYNTMIKIYGKSLEHEKATNLMQEMQNR----GIEP-NAIT 301 (542)
Q Consensus 231 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~ 301 (542)
.+......+...|++++|...++++.+.... + ...+..+...+...|++++|...+++.... +..| ....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445556677888888888888888776422 2 356677777888888888888888776532 1111 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHHcCC-------------HHHHHHHHHHhcCC
Q 038401 302 YSTIIAIWGKAGKLDRAAMLFQKLRSSGV-EID----PVLYQTMIVAYERVGL-------------VAHAKRLLHELRQP 363 (542)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~-------------~~~a~~~~~~~~~~ 363 (542)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ .+++...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 66677777788888888888777654310 111 2244445555555555 1111100
Q ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHc----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC---
Q 038401 364 NTIPRETAITILARAGRIEEATWVFRQAFDA----GE-VKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGY-FPD--- 434 (542)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--- 434 (542)
+++|.+.++++++. +. +.....+..++..+...|++++|...++++.+... .++
T Consensus 159 -----------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 221 (338)
T 3ro2_A 159 -----------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 221 (338)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH
Confidence 44444444443321 11 12245678888899999999999999998875310 112
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC---Cch-HHHHH-HHHHHhccCChHHHHHHHHHHhc-C---CC-CC
Q 038401 435 -SHIIALVLNSYGKLREFETADDLYSEMQEEGCV---FSD-QVHFQ-MLSLYGARKDFNMLESLFERLDS-D---SN-IN 503 (542)
Q Consensus 435 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~-~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~---~~-~~ 503 (542)
..++..++..+...|++++|...++++.+.... ++. ...+. ++.++...|++++|...+++... . ++ ..
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 301 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 301 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 247788888999999999999999998764311 111 22333 88999999999999999998422 1 11 11
Q ss_pred chhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 504 KKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
....+..++.+|...|++++|..+++++.+..
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 13578899999999999999999999987754
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=8.8e-13 Score=113.23 Aligned_cols=204 Identities=9% Similarity=0.000 Sum_probs=130.7
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 038401 17 PSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLI 96 (542)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 96 (542)
.++..+..+...+...|++++|...|+.+.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 3455677777777777788888777777776542 256677777777777777777777777776653 22556666677
Q ss_pred HHHHhc-CCHHHHHHHHHHhHhCCCCc-cHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Q 038401 97 ELARKL-SDYSKAISIFSRLKSSGIVP-DLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHK 174 (542)
Q Consensus 97 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 174 (542)
..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 777777 77777777777776622122 24556666666667777777777777666542 2245566666666666666
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 038401 175 FVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKM 223 (542)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 223 (542)
+++|.+.++++.+.....+...+..+...+...|+.+.+...++.+...
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6666666666655432134555555555566666666666666665543
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=7.9e-13 Score=115.85 Aligned_cols=199 Identities=14% Similarity=0.026 Sum_probs=94.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHh
Q 038401 56 TYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFG 135 (542)
Q Consensus 56 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (542)
.|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444444444555555555554444432 1234444444444555555555555555444432 223444444444555
Q ss_pred ccCcHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHH
Q 038401 136 KAKLFKEARLLIEEMREQGVKP-DTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDAD 214 (542)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 214 (542)
..|++++|...++++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555544421122 23344444555555555555555555554432 223444555555555555555555
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 038401 215 RLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRK 258 (542)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 258 (542)
..++.+.+.. +.+...+..+...+...|++++|.+.++.+.+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5555554432 233444445555555555555555555555544
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=6.8e-14 Score=132.28 Aligned_cols=304 Identities=11% Similarity=0.001 Sum_probs=170.0
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC-
Q 038401 157 PDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLD----LTTCNIMIDVYGQLDMAKDADRLFWSMRKM----GIDP- 227 (542)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 227 (542)
+....+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345556666677777777777777777776653 222 245566666677777777777777665432 1111
Q ss_pred ChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC-Cc----HHHHHHHHHHHHccCC--------------------HHH
Q 038401 228 SVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIE-QN----VVTYNTMIKIYGKSLE--------------------HEK 282 (542)
Q Consensus 228 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~ 282 (542)
...++..+...+...|++++|...+++....... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 1334555555666666666666666665543100 01 2244455555555555 555
Q ss_pred HHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 038401 283 ATNLMQEMQNR----GIEP-NAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGV-EIDPVLYQTMIVAYERVGLVAHAKRL 356 (542)
Q Consensus 283 a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (542)
|...+.+.... +..| ...++..+...+...|++++|...+++..+... .++...
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------- 225 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA-------------------- 225 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH--------------------
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH--------------------
Confidence 55555443321 1000 112333444444444444444444444432100 000000
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCC----Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 038401 357 LHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGE----VK-DISVFGCMIELFSRNKKYANVIEVFEKMRSA-- 429 (542)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 429 (542)
....+..+...+...|++++|...++++++... .+ ...++..++..|...|++++|...++++.+.
T Consensus 226 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 226 -------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp -------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 000233445556666777777777776654311 11 1567888899999999999999999988753
Q ss_pred --CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC---CCCch-HHHHH-HHHHHhccCChHH
Q 038401 430 --GYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEG---CVFSD-QVHFQ-MLSLYGARKDFNM 488 (542)
Q Consensus 430 --~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~~~~~-l~~~~~~~g~~~~ 488 (542)
+..+ ...++..+...|...|++++|...++++.+.. ..++. ...+. ++.++...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1111 14577888899999999999999999987652 11122 22222 7778877776643
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=6.7e-13 Score=116.28 Aligned_cols=200 Identities=12% Similarity=0.012 Sum_probs=100.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038401 90 VLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLY 169 (542)
Q Consensus 90 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 169 (542)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344444555555555555555555554432 2234455555555555555555555555554432 12444555555555
Q ss_pred HHCCChHHHHHHHHHHHhcCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHH
Q 038401 170 VENHKFVEALSVFAEMNEVNC-PLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEA 248 (542)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 248 (542)
...|++++|.+.++++...+. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555544111 1233444445555555555555555555555443 22344455555555555555555
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038401 249 IHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNR 293 (542)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (542)
...++.+.+.. +.+...+..+...+...|+.++|...++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55555554432 233444455555555555555555555555544
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.2e-12 Score=112.36 Aligned_cols=202 Identities=10% Similarity=-0.067 Sum_probs=119.1
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHH
Q 038401 53 DRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMIN 132 (542)
Q Consensus 53 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 132 (542)
+...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 44566666777777777777777777766653 2245666666677777777777777777766543 334556666666
Q ss_pred HHhcc-CcHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCH
Q 038401 133 VFGKA-KLFKEARLLIEEMREQGVKP-DTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMA 210 (542)
Q Consensus 133 ~~~~~-~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (542)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66666 67777776666666522222 24555566666666666666666666665543 22345555555555556666
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 038401 211 KDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQR 257 (542)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 257 (542)
++|...++.+.......+...+..+...+...|+.+.+..+++.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666655555443103444444444455555555555555555543
No 62
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.5e-13 Score=119.67 Aligned_cols=200 Identities=14% Similarity=0.085 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 038401 19 VFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIEL 98 (542)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (542)
...|..+...+...|++++|...|+.+.+... .+...+..+...+...|++++|++.++++.+... .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 34555556666666666666666666665432 2455666666666666666666666666655432 245555556666
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHH
Q 038401 99 ARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEA 178 (542)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 178 (542)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666655542 3344555555555556666666666666555442 22444555555555555555555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 038401 179 LSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKM 223 (542)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 223 (542)
.+.++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55555555432 223444555555555555555555555555443
No 63
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=2.8e-13 Score=117.99 Aligned_cols=201 Identities=15% Similarity=0.131 Sum_probs=109.3
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHH
Q 038401 53 DRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMIN 132 (542)
Q Consensus 53 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 132 (542)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34456666666777777777777777776653 2356666666777777777777777777766543 334566666666
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHH
Q 038401 133 VFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKD 212 (542)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (542)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 6666677777777766666543 2345556666666666666666666666665543 2345555555556666666666
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 038401 213 ADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRK 258 (542)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 258 (542)
|...++.+.+.. +.+..++..+..++...|++++|...++.+.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666555443 233445555555555555555555555555544
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=4.9e-13 Score=110.82 Aligned_cols=162 Identities=9% Similarity=0.059 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 038401 368 RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGK 447 (542)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 447 (542)
+..+...+...|++++|++.|+++++.. +.++..+..++.+|...|++++|+..++++.... +.+...+..+...+..
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHH
Confidence 4455666777777788888888887764 3567888888888889999999999998888743 2245677777788888
Q ss_pred cCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHH
Q 038401 448 LREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDAS 525 (542)
Q Consensus 448 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 525 (542)
.++++.|...+.++.+.. |.+...+. ++.++...|++++|++.+++ +..+|. ...+|..++.+|...|++++|+
T Consensus 86 ~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--FIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch--hhhHHHHHHHHHHHCCCHHHHH
Confidence 899999999999888876 22233333 88888899999999999888 444554 5678888999999999999999
Q ss_pred HHHHHHHhcC
Q 038401 526 RIMNRMNKRR 535 (542)
Q Consensus 526 ~~~~~~~~~~ 535 (542)
+.|+++.+..
T Consensus 162 ~~~~~al~~~ 171 (184)
T 3vtx_A 162 KYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 9999887754
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=1.2e-13 Score=132.45 Aligned_cols=193 Identities=12% Similarity=0.031 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHhcCCC---CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 038401 333 DPVLYQTMIVAYERVGLV-AHAKRLLHELRQPN---TIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIE 408 (542)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 408 (542)
+...+..+..++...|++ ++|...+++..+.+ ...+..+..++...|++++|.+.|+++++. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 334444444444444444 44444444433211 122334445555666666666667777664 355677888888
Q ss_pred HHHhc---------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHHcCCCC-c
Q 038401 409 LFSRN---------KKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKL--------REFETADDLYSEMQEEGCVF-S 469 (542)
Q Consensus 409 ~~~~~---------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~-~ 469 (542)
++... |++++|+..|+++++. .| +...|..++.+|... |++++|+..|+++++..+.. .
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 8888888888888874 35 467788888888887 88899999999888876100 2
Q ss_pred hHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHH
Q 038401 470 DQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 470 ~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 531 (542)
+...+. ++.+|...|++++|.+.+++ +..+|+ ...++..++.++...|++++|++.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPA--WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333333 88888889999999988888 455555 4567888888888888888888766543
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.8e-13 Score=129.61 Aligned_cols=95 Identities=12% Similarity=-0.043 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHHC----C-CCCChhH
Q 038401 161 SYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDL----TTCNIMIDVYGQLDMAKDADRLFWSMRKM----G-IDPSVVS 231 (542)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 231 (542)
.+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+++.... + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445556666677777777766666643 1122 34555556666666666666666655432 0 0112233
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Q 038401 232 YNTLLRVYGEAELFGEAIHLFRLMQ 256 (542)
Q Consensus 232 ~~~ll~~~~~~~~~~~a~~~~~~~~ 256 (542)
+..+...+...|++++|...+++..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444445555555555555554443
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=1.5e-11 Score=111.02 Aligned_cols=211 Identities=12% Similarity=0.110 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 038401 281 EKATNLMQEMQNRGIEPNAITYSTIIAIWG-------KAGKL-------DRAAMLFQKLRSSGVEIDPVLYQTMIVAYER 346 (542)
Q Consensus 281 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (542)
++|..+|++..... +.++..|..++..+. ..|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665542 334455555555543 23553 6666666666652112344556666666666
Q ss_pred cCCHHHHHHHHHHhcCCCC---C-CHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHHHH
Q 038401 347 VGLVAHAKRLLHELRQPNT---I-PRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFS-RNKKYANVIE 421 (542)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~---~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~ 421 (542)
.|++++|..+|+++...++ . .|..++..+.+.|++++|..+|+++++..+ ++...|...+.... ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666665544221 1 234444445555555555555555555422 23333332222211 1455555555
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCch--HHHHH-HHHHHhccCChHHHHHHHHH
Q 038401 422 VFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSD--QVHFQ-MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 422 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~-l~~~~~~~g~~~~A~~~~~~ 495 (542)
+|+++++. .| +...|..++..+.+.|+.++|+.+|+++++....+|+ ...+. ++..+.+.|+.++|..++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555542 12 3445555555555555555555555555554211221 11222 44555555555555555555
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=1.1e-12 Score=122.44 Aligned_cols=223 Identities=10% Similarity=0.010 Sum_probs=151.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhcC---CCC-------CCHHHHH
Q 038401 308 IWGKAGKLDRAAMLFQKLRSSGV-EI----DPVLYQTMIVAYERVGLVAHAKRLLHELRQ---PNT-------IPRETAI 372 (542)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-------~~~~~l~ 372 (542)
.+...|++++|...++++.+... .+ ...++..+...|...|+++.|...+++... ... ..+..+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34456666666666666554210 01 134455555666666666666666655432 111 1123455
Q ss_pred HHHHHhCCHHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 038401 373 TILARAGRIEEATWVFRQAFDA----GEV-KDISVFGCMIELFSRNKKYANVIEVFEKMRS-----AGYFPDSHIIALVL 442 (542)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~ 442 (542)
.++...|++++|.+.++++++. +.+ ....++..++.+|...|++++|+..+++.++ .. +....++..++
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 6667777777777777777653 111 1245788899999999999999999999986 32 12357788899
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCC--Cc-hHHHHH-HHHHHhccCC---hHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038401 443 NSYGKLREFETADDLYSEMQEEGCV--FS-DQVHFQ-MLSLYGARKD---FNMLESLFERLDSDSNINKKELHHVVAGIY 515 (542)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~-~~~~~~-l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 515 (542)
..|.+.|++++|..+++++.+.... .| ....+. +...+...|+ +++|+..+++....+. ....+..++.+|
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~--~~~~~~~la~~y 346 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAY--IEACARSAAAVF 346 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhH--HHHHHHHHHHHH
Confidence 9999999999999999999886322 12 222333 6778888888 8888888887432222 346788999999
Q ss_pred HhhcchhhHHHHHHHHHh
Q 038401 516 ERANRLNDASRIMNRMNK 533 (542)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~ 533 (542)
...|++++|..+++++.+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999999765
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=1.5e-11 Score=110.98 Aligned_cols=217 Identities=12% Similarity=0.119 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038401 246 GEAIHLFRLMQRKEIEQNVVTYNTMIKIYG-------KSLEH-------EKATNLMQEMQNRGIEPNAITYSTIIAIWGK 311 (542)
Q Consensus 246 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 311 (542)
++|..+|+...... +.+...|..++..+. +.|+. ++|..+|++..+.-.+-+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666655542 335555555555544 24554 6777777777652112244566677777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHH-HHHH---HhCCHHHHHH
Q 038401 312 AGKLDRAAMLFQKLRSSGVEIDPV-LYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAI-TILA---RAGRIEEATW 386 (542)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~-~~~~---~~g~~~~A~~ 386 (542)
.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+.++......+ .+.. ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777642 11233 6777777777777777777777777654333332221 2222 2699999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038401 387 VFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAG-YFP--DSHIIALVLNSYGKLREFETADDLYSEMQE 463 (542)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 463 (542)
+|+++++.. +.++..|..++..+...|++++|..+|+++++.. +.| ....|..++..+.+.|+.++|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998863 4578899999999999999999999999999863 455 457888888888999999999999999998
Q ss_pred cC
Q 038401 464 EG 465 (542)
Q Consensus 464 ~~ 465 (542)
..
T Consensus 270 ~~ 271 (308)
T 2ond_A 270 AF 271 (308)
T ss_dssp HT
T ss_pred Hc
Confidence 76
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=1.6e-12 Score=107.73 Aligned_cols=163 Identities=14% Similarity=0.060 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCC---CHHHHHHHH
Q 038401 299 AITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTI---PRETAITIL 375 (542)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~ 375 (542)
+..|..+...+...|++++|+..|++.++.. +-+...+..+..++.+.|++++|...+......++. .+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 3444555555555555555555555555443 224444444555555555555554444443321111 122223334
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 038401 376 ARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETA 454 (542)
Q Consensus 376 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 454 (542)
...++++.|...+.++.+.. +.+...+..++.++...|++++|++.|+++++. .| +..++..++.+|.+.|++++|
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHHH
Confidence 44555555555555555542 345566666666666677777777777666663 24 445666666666667777777
Q ss_pred HHHHHHHHHcC
Q 038401 455 DDLYSEMQEEG 465 (542)
Q Consensus 455 ~~~~~~~~~~~ 465 (542)
++.|+++++.+
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 77777766654
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=6.9e-13 Score=121.70 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC---Cch-HH
Q 038401 402 VFGCMIELFSRNKKYANVIEVFEKMRSAGY-FPD----SHIIALVLNSYGKLREFETADDLYSEMQEEGCV---FSD-QV 472 (542)
Q Consensus 402 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~-~~ 472 (542)
.+..++..+...|++++|...+++..+... .++ ..++..+...+...|++++|...++++.+.... ++. ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 566666777777777777777776654210 011 345666677777777777777777776654210 111 11
Q ss_pred HHH-HHHHHhccCChHHHHHHHHHH
Q 038401 473 HFQ-MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 473 ~~~-l~~~~~~~g~~~~A~~~~~~~ 496 (542)
.+. ++.++...|++++|...+++.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Confidence 222 677777777777777777774
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=4.5e-12 Score=118.56 Aligned_cols=223 Identities=8% Similarity=-0.087 Sum_probs=135.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C----CCCHHHHHH
Q 038401 271 IKIYGKSLEHEKATNLMQEMQNR----GIEP-NAITYSTIIAIWGKAGKLDRAAMLFQKLRSSG--V----EIDPVLYQT 339 (542)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~ 339 (542)
...+...|++++|...+++..+. +-.+ ...++..+...+...|+++.|...+.+..+.. . +....++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33444555555555555555432 1001 12344555555555555555555555544320 0 001234455
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcCC---CC------CCHHHHHHHHHHhCCHHHHHHHHHHHHHc----CC-CcCHHHHHH
Q 038401 340 MIVAYERVGLVAHAKRLLHELRQP---NT------IPRETAITILARAGRIEEATWVFRQAFDA----GE-VKDISVFGC 405 (542)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~---~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~ 405 (542)
+..+|...|++++|...+++.... .. ..+..+..++...|++++|++.++++++. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 555556666666666655554320 00 12344566677778888888888877762 23 345778889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC---CCCC-HHHHHHHHHHHhccCc---HHHHHHHHHHHHHcCCCCchHHHHH-HH
Q 038401 406 MIELFSRNKKYANVIEVFEKMRSAG---YFPD-SHIIALVLNSYGKLRE---FETADDLYSEMQEEGCVFSDQVHFQ-ML 477 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~-l~ 477 (542)
++.++...|++++|...+++..+.. -.|. ...+..+...+...|+ .++|+.++++. +..+.....+. ++
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 9999999999999999999987631 0121 2345678888889998 77777777766 21222233333 89
Q ss_pred HHHhccCChHHHHHHHHHH
Q 038401 478 SLYGARKDFNMLESLFERL 496 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~ 496 (542)
.+|...|++++|...+++.
T Consensus 347 ~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999984
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.4e-12 Score=118.20 Aligned_cols=235 Identities=13% Similarity=0.174 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC-------C
Q 038401 299 AITYSTIIAIWGKAGKLDRAAMLFQKLRSS-------GVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQP-------N 364 (542)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~ 364 (542)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++.... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345566666666777777777777666552 22334556667777777888888888777765431 1
Q ss_pred ----CCCHHHHHHHHHHhCCHHHHHHHHHHHHHc------CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 038401 365 ----TIPRETAITILARAGRIEEATWVFRQAFDA------GE-VKDISVFGCMIELFSRNKKYANVIEVFEKMRSA---- 429 (542)
Q Consensus 365 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 429 (542)
...+..+...+...|++++|...++++++. +. +.....+..++..+...|++++|+.+++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 122445677788899999999999999874 22 234567888899999999999999999998763
Q ss_pred --CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-------CCchH------HHHH-HHHHHhccCChHHHHHH
Q 038401 430 --GYFPD-SHIIALVLNSYGKLREFETADDLYSEMQEEGC-------VFSDQ------VHFQ-MLSLYGARKDFNMLESL 492 (542)
Q Consensus 430 --~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~------~~~~-l~~~~~~~g~~~~A~~~ 492 (542)
+..|+ ..++..++..|...|++++|...++++.+... .+... ..+. ....+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 21332 35778888999999999999999999987420 00000 1111 33445556777777777
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhc
Q 038401 493 FERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 534 (542)
+++..... +.....+..++.+|...|++++|.++++++.+.
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77754322 224578999999999999999999999998764
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=2.5e-12 Score=128.16 Aligned_cols=159 Identities=11% Similarity=0.108 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHh
Q 038401 368 RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYG 446 (542)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 446 (542)
+..+..++.+.|++++|++.|+++++.. +.+...|..++.+|.+.|++++|++.|+++++ +.| +...|..++.+|.
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 4456677778888888888888888863 35688899999999999999999999999988 446 4688889999999
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhH
Q 038401 447 KLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDA 524 (542)
Q Consensus 447 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 524 (542)
+.|++++|++.|+++++.+ |.....+. ++.+|...|++++|++.+++ +..+|+ ...+|..++.+|...|+|++|
T Consensus 89 ~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~--~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD--FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCCTTH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999876 22333344 89999999999999999999 566665 567899999999999999999
Q ss_pred HHHHHHHHh
Q 038401 525 SRIMNRMNK 533 (542)
Q Consensus 525 ~~~~~~~~~ 533 (542)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=7.1e-12 Score=120.17 Aligned_cols=211 Identities=12% Similarity=0.004 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCH-HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 038401 35 WELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMF-DSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFS 113 (542)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 113 (542)
++++...++...... +.+...+..+...+...|++ ++|++.|++..+..+ .+...|..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334444444443332 22455555555666666666 666666666555432 245555556666666666666666666
Q ss_pred HhHhCCCCccHhHHHHHHHHHhcc---------CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC--------CChH
Q 038401 114 RLKSSGIVPDLVAYNTMINVFGKA---------KLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVEN--------HKFV 176 (542)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------g~~~ 176 (542)
+..+. .|+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 65554 34445555555555555 55666666665555542 22345555555555555 5555
Q ss_pred HHHHHHHHHHhcCCC--CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHH
Q 038401 177 EALSVFAEMNEVNCP--LDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHL 251 (542)
Q Consensus 177 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 251 (542)
+|++.|++..+.... .+...|..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555553210 244555555555555555555555555555443 22333444455555555555555443
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.9e-12 Score=117.29 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=128.5
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhC------C
Q 038401 18 SVFAYNVVLRNVLRAKQWELAHGLFDEMRQR-------GIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQD------R 84 (542)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~ 84 (542)
+..++..+...+...|++++|...|+.+.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999988773 22334567888888999999999999999888764 2
Q ss_pred C-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhC------CC-CccHhHHHHHHHHHhccCcHHHHHHHHHHHHHc---
Q 038401 85 V-SGDLVLYSNLIELARKLSDYSKAISIFSRLKSS------GI-VPDLVAYNTMINVFGKAKLFKEARLLIEEMREQ--- 153 (542)
Q Consensus 85 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 153 (542)
. +.....+..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...+++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223557778888888999999999988887753 21 223556777788888888888888888887664
Q ss_pred ---CCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 038401 154 ---GVKP-DTVSYSTLLNLYVENHKFVEALSVFAEMNE 187 (542)
Q Consensus 154 ---g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (542)
+..| ...++..+...|...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 245677778888888888888888888765
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=1.1e-11 Score=102.71 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=112.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREF 451 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 451 (542)
...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCH
Confidence 444555666666666666665542 3456777778888888888888888888887642 23567777778888888888
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHHHHH
Q 038401 452 ETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIYERANRLNDASRIMN 529 (542)
Q Consensus 452 ~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 529 (542)
++|.+.++++.+.. +.+...+. ++.++...|++++|.+.+++. ...|. ....+..++.+|...|++++|..+++
T Consensus 93 ~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 93 DLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN--EGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888765 22233333 778888888888888888884 33333 45677888888888888888888888
Q ss_pred HHHhcC
Q 038401 530 RMNKRR 535 (542)
Q Consensus 530 ~~~~~~ 535 (542)
++.+..
T Consensus 169 ~~~~~~ 174 (186)
T 3as5_A 169 KANELD 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 876654
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=2e-11 Score=105.02 Aligned_cols=190 Identities=12% Similarity=0.037 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCC----CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 038401 333 DPVLYQTMIVAYERVGLVAHAKRLLHELRQPN----TIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIE 408 (542)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 408 (542)
|+..+......+...|++++|...|++....+ ...+..+..++...|++++|+..++++++.. +.+...|..++.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 45555666666666666666666666554322 2223334455555666666666666666542 234455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCch---HHHHH-H
Q 038401 409 LFSRNKKYANVIEVFEKMRSAGYFPD-S-------HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSD---QVHFQ-M 476 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~-l 476 (542)
++...|++++|+..+++.++. .|+ . ..|..+...+...|++++|+..|+++++.+ |+ ...+. +
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHH
Confidence 666666666666666666552 232 2 234455555556666666666666665543 33 12222 4
Q ss_pred HHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 477 LSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
+.++...| ...++++....... ...| ........|.+++|+.++++..+..+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~~-~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASSN-KEKY--ASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTTC-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHH-----HHHHHHHHhcccCC-HHHH--HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 55553322 22233322211111 1111 22223344556999999999988664
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=1.2e-09 Score=101.77 Aligned_cols=269 Identities=11% Similarity=-0.011 Sum_probs=128.3
Q ss_pred HHHHCCChHHHHHHHHHHHhcCCCCChh----hHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----hhHHHHHHHH
Q 038401 168 LYVENHKFVEALSVFAEMNEVNCPLDLT----TCNIMIDVYGQLDMAKDADRLFWSMRKMGI-DPS----VVSYNTLLRV 238 (542)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~ 238 (542)
.+...|++++|...+++........+.. +++.+...+...|++++|...+++...... ..+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666666665554432111111 233444455555666666666555543210 011 1223445555
Q ss_pred HHhcCcHHHHHHHHHHHHhc----CCC--C-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHH
Q 038401 239 YGEAELFGEAIHLFRLMQRK----EIE--Q-NVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIE--P--NAITYSTIIA 307 (542)
Q Consensus 239 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p--~~~~~~~l~~ 307 (542)
+...|++++|...++..... +.. | ....+..+...+...|++++|...+++....... + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66666666666666655442 111 1 2234455566666667777777776666543211 1 1234555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC-C-HHHHH----HHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCH
Q 038401 308 IWGKAGKLDRAAMLFQKLRSSGVEI-D-PVLYQ----TMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRI 381 (542)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 381 (542)
.+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.....+..
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~-------------- 248 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN-------------- 248 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc--------------
Confidence 6666777777777776665421111 1 11111 12223445566666665555554322110
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHhccCcHHHHHH
Q 038401 382 EEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA----GYFPDS-HIIALVLNSYGKLREFETADD 456 (542)
Q Consensus 382 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 456 (542)
.......+..+...+...|++++|...++++... +..++. ..+..+..++...|+.++|..
T Consensus 249 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 314 (373)
T 1hz4_A 249 --------------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 314 (373)
T ss_dssp --------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred --------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 0001122344455555555555555555554321 111111 234445555566666666666
Q ss_pred HHHHHHHc
Q 038401 457 LYSEMQEE 464 (542)
Q Consensus 457 ~~~~~~~~ 464 (542)
.++++...
T Consensus 315 ~l~~al~~ 322 (373)
T 1hz4_A 315 VLLDALKL 322 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665553
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=5.4e-10 Score=104.04 Aligned_cols=234 Identities=11% Similarity=-0.036 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHH----hHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC----HHhH
Q 038401 22 YNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRY----TYSTLITCFGKEGMFDSAISWLQQMEQDRVS-GD----LVLY 92 (542)
Q Consensus 22 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~ 92 (542)
.......+...|++++|...++.........+.. ++..+...+...|++++|.+.+++....... ++ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344455667788888888888877653222222 4555566677778888888777776543111 11 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhC----CCC--c-cHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC----CCHHH
Q 038401 93 SNLIELARKLSDYSKAISIFSRLKSS----GIV--P-DLVAYNTMINVFGKAKLFKEARLLIEEMREQGVK----PDTVS 161 (542)
Q Consensus 93 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~ 161 (542)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 45566667777777777777665532 111 2 2334445556666667777777776665543211 11234
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhcCCCCC-hhhHH-----HHHHHHhccCCHHHHHHHHHHHHHCCCCCC---hhHH
Q 038401 162 YSTLLNLYVENHKFVEALSVFAEMNEVNCPLD-LTTCN-----IMIDVYGQLDMAKDADRLFWSMRKMGIDPS---VVSY 232 (542)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 232 (542)
+..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++........+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 55555666666666666666666543211111 01111 122224455555555555555443221100 1123
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHH
Q 038401 233 NTLLRVYGEAELFGEAIHLFRLM 255 (542)
Q Consensus 233 ~~ll~~~~~~~~~~~a~~~~~~~ 255 (542)
..+...+...|++++|...++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444555555555555444
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.37 E-value=2.9e-11 Score=107.79 Aligned_cols=199 Identities=13% Similarity=0.194 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCC--------C---CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------C
Q 038401 335 VLYQTMIVAYERVGLVAHAKRLLHELRQP--------N---TIPRETAITILARAGRIEEATWVFRQAFDAG-------E 396 (542)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~ 396 (542)
.++..+...+...|++++|...+++.... + ...+..+...+...|++++|.+.++++++.. .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444555555555555555443311 0 1123456777888999999999999998651 1
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC----
Q 038401 397 VKDISVFGCMIELFSRNKKYANVIEVFEKMRSA------GYFPD-SHIIALVLNSYGKLREFETADDLYSEMQEEG---- 465 (542)
Q Consensus 397 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 465 (542)
+.....+..++..+...|++++|+..++++.+. +..|+ ..++..++..|...|++++|...++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 234677888999999999999999999999874 11332 4678888999999999999999999998751
Q ss_pred --CCCc-hHHHHH-HHHHHhccCC------hHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhc
Q 038401 466 --CVFS-DQVHFQ-MLSLYGARKD------FNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 466 --~~~~-~~~~~~-l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 534 (542)
...+ ....+. +...+...+. +.++...++.+... .+.....+..++.+|...|++++|..+++++.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0011 112222 4444444333 33333333332211 1123467889999999999999999999998763
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=3.8e-10 Score=105.21 Aligned_cols=307 Identities=12% Similarity=0.031 Sum_probs=152.1
Q ss_pred CCcHHHHHHHHHHH--HHhcCHHHHHHHHHHHHhC--CCCCC--HHhHHHHHHHHh--ccCCHHH---------HHHHHH
Q 038401 16 SPSVFAYNVVLRNV--LRAKQWELAHGLFDEMRQR--GIAPD--RYTYSTLITCFG--KEGMFDS---------AISWLQ 78 (542)
Q Consensus 16 ~~~~~~~~~ll~~~--~~~~~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~~--~~g~~~~---------a~~~~~ 78 (542)
.|+...-+.+-.-| .+.+++++|..+++++.+. ....+ ...|-.++..-. ..+.+.. ..+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34444444444444 6788999999998887653 22223 223344333210 0111111 114444
Q ss_pred HHHhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-Cc----cHhHHHHHHHHHhccCcHHHHHHHHHH
Q 038401 79 QMEQDRVSGDL----VLYSNLIELARKLSDYSKAISIFSRLKSSGI-VP----DLVAYNTMINVFGKAKLFKEARLLIEE 149 (542)
Q Consensus 79 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 149 (542)
.+.....+.+. ..+......+...|++++|...|++..+... .+ ...++..+...+...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 43322111010 1222334445667777777777777664310 01 234566666677777777777777766
Q ss_pred HHHcC--C---CC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhc----CCC-CChhhHHHHHHHHhccCCHHHHHHHHH
Q 038401 150 MREQG--V---KP-DTVSYSTLLNLYVENHKFVEALSVFAEMNEV----NCP-LDLTTCNIMIDVYGQLDMAKDADRLFW 218 (542)
Q Consensus 150 ~~~~g--~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 218 (542)
..+.. . .+ ...++..+...|...|++++|.+.+.+..+. +.+ ....++..+..++...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55421 0 11 1345566666677777777777776665442 100 112345555566666666666666666
Q ss_pred HHHH-----CCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHccCC---HHHHHHH
Q 038401 219 SMRK-----MGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKE----IEQNVVTYNTMIKIYGKSLE---HEKATNL 286 (542)
Q Consensus 219 ~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 286 (542)
+... .. +....++..+...+.+.|++++|...+++..... .+.....+..+...+...++ ..+|+..
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 6554 21 2224445555556666666666666666555431 11112233444444445555 4444444
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038401 287 MQEMQNRGIEPN-AITYSTIIAIWGKAGKLDRAAMLFQKLR 326 (542)
Q Consensus 287 ~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (542)
+++ .+..|+ ...+..+...|...|++++|...|+...
T Consensus 326 ~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 326 FEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 433 111111 2233445555555566665555555544
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=3.5e-10 Score=97.13 Aligned_cols=207 Identities=9% Similarity=-0.005 Sum_probs=104.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038401 263 NVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIV 342 (542)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (542)
++..+......+...|++++|...|++..+....++...+..+..++...|++++|+..++...+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3455555666666666666666666666555322455555555556666666666666666665543 223444444444
Q ss_pred HHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCC
Q 038401 343 AYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDI-------SVFGCMIELFSRNKK 415 (542)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~ 415 (542)
++... |++++|+..++++++.. +.+. ..|..+...+...|+
T Consensus 85 ~~~~~-------------------------------~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~ 132 (228)
T 4i17_A 85 AYRDM-------------------------------KNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGN 132 (228)
T ss_dssp HHHHT-------------------------------TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHc-------------------------------ccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhcc
Confidence 45444 45555555555555432 1223 345556666666677
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHH
Q 038401 416 YANVIEVFEKMRSAGYFPD---SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESL 492 (542)
Q Consensus 416 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 492 (542)
+++|++.|+++++ ..|+ ...+..++.+|...|+ ..++++...... ....+ ........+.+++|+..
T Consensus 133 ~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~--~~~~~-~~~~~~~~~~~~~A~~~ 202 (228)
T 4i17_A 133 IEKAEENYKHATD--VTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASS--NKEKY-ASEKAKADAAFKKAVDY 202 (228)
T ss_dssp HHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTT--CHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccC--CHHHH-HHHHHHHHHHHHHHHHH
Confidence 7777777776666 3354 2455555555544332 333444433311 11111 11222334556666666
Q ss_pred HHH-HhcCCCCCchhHHHHHHHH
Q 038401 493 FER-LDSDSNINKKELHHVVAGI 514 (542)
Q Consensus 493 ~~~-~~~~~~~~~~~~~~~l~~~ 514 (542)
+++ +...|+ +..+...+..+
T Consensus 203 ~~~a~~l~p~--~~~~~~~l~~i 223 (228)
T 4i17_A 203 LGEAVTLSPN--RTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHhhcCCC--CHHHHHHHHHH
Confidence 666 333443 23344444433
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=2.6e-11 Score=108.42 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcc--C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038401 247 EAIHLFRLMQRKEIEQNVVTYNTMIKIYGKS--L-EHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQ 323 (542)
Q Consensus 247 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (542)
+|.+++.+..+.- +++...| . +.+. + ++++|...+.+. ...|...|++++|...|.
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-K----LFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-H----HHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-h----hcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4566666666552 2222222 2 2232 2 477777777665 334667888888888888
Q ss_pred HHHhc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 038401 324 KLRSS----GVEID-PVLYQTMIVAYERVGLVAHAKRLLHELR 361 (542)
Q Consensus 324 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (542)
+..+. +.+++ ..++..+..+|...|++++|+..+++..
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77553 21111 3466666667777777777776666543
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.32 E-value=1.5e-10 Score=101.78 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=102.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHh
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEVKD---ISVFGCMIELFSRNKKYANVIEVFEKMRSAGY-FPD-SHIIALVLNSYG 446 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~ 446 (542)
...+.+.|++++|+..|+++++..+ .+ ...+..++.++...|++++|+..|+++++... .|. ...+..++.++.
T Consensus 22 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~ 100 (261)
T 3qky_A 22 AMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY 100 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH
Confidence 4445555666666666666655422 22 45566666666666666666666666665321 112 234555556666
Q ss_pred c--------cCcHHHHHHHHHHHHHcCCCCchHH----------------HHHHHHHHhccCChHHHHHHHHHH-hcCCC
Q 038401 447 K--------LREFETADDLYSEMQEEGCVFSDQV----------------HFQMLSLYGARKDFNMLESLFERL-DSDSN 501 (542)
Q Consensus 447 ~--------~g~~~~A~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 501 (542)
. .|++++|+..|+++++..+..+... .+.++.+|...|++++|+..++++ ...|+
T Consensus 101 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 101 KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 5 6667777777776666552221111 144788888899999999888884 44444
Q ss_pred CC-chhHHHHHHHHHHhh----------cchhhHHHHHHHHHhcCC
Q 038401 502 IN-KKELHHVVAGIYERA----------NRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 502 ~~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 536 (542)
.. ...++..++.+|... |++++|+..++++.+..+
T Consensus 181 ~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 181 TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 32 346788888888876 888899999988887654
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=3e-10 Score=93.87 Aligned_cols=166 Identities=14% Similarity=0.088 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 038401 19 VFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIEL 98 (542)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (542)
...|..+...+...|++++|...|+.+.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34566667777777888888887777766532 356677777777777777777777777776653 2356666677777
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHH
Q 038401 99 ARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEA 178 (542)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 178 (542)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777766553 3455666666666777777777777777766553 23456666666667777777777
Q ss_pred HHHHHHHHhc
Q 038401 179 LSVFAEMNEV 188 (542)
Q Consensus 179 ~~~~~~~~~~ 188 (542)
.+.++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7776666543
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.31 E-value=2.3e-10 Score=97.85 Aligned_cols=90 Identities=8% Similarity=0.099 Sum_probs=66.1
Q ss_pred cCcHHHHHHHHHHHHHcCCCCchHH----------------HHHHHHHHhccCChHHHHHHHHHH-hcCCCCC-chhHHH
Q 038401 448 LREFETADDLYSEMQEEGCVFSDQV----------------HFQMLSLYGARKDFNMLESLFERL-DSDSNIN-KKELHH 509 (542)
Q Consensus 448 ~g~~~~A~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~~~ 509 (542)
.|++++|...|+++++..+..+... .+.++..|...|++++|+..++++ ...|+.. ...++.
T Consensus 109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 188 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP 188 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence 5667777777777776652222111 133678899999999999999995 4455532 136799
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHhcCCC
Q 038401 510 VVAGIYERANRLNDASRIMNRMNKRRTF 537 (542)
Q Consensus 510 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 537 (542)
.++.+|.+.|++++|++.++++...++.
T Consensus 189 ~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 9999999999999999999998887643
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=2.3e-10 Score=114.07 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=147.1
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 038401 17 PSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLI 96 (542)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 96 (542)
-++.+|+.+...+.+.|++++|++.|++.++.... +..+|..+..++.+.|++++|++.|++.++..+. +...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34678999999999999999999999999987533 6789999999999999999999999999987533 678999999
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChH
Q 038401 97 ELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFV 176 (542)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 176 (542)
.++...|++++|++.|++..+.. +.+...|..+..++...|++++|+..|++..+.. +-+...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999998864 4468899999999999999999999999998863 236788999999999999999
Q ss_pred HHHHHHHHHHh
Q 038401 177 EALSVFAEMNE 187 (542)
Q Consensus 177 ~a~~~~~~~~~ 187 (542)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888754
No 89
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.28 E-value=5.9e-11 Score=97.19 Aligned_cols=162 Identities=10% Similarity=0.023 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 038401 367 PRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNS-Y 445 (542)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~ 445 (542)
........+...|++++|...|+++++.. +.+...+..+..++...|++++|+..++++.+. .|+...+...... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHH
Confidence 34455667788899999999999887753 356888999999999999999999999998774 3554433332222 1
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhh
Q 038401 446 GKLREFETADDLYSEMQEEGCVFSDQV-HFQMLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLND 523 (542)
Q Consensus 446 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 523 (542)
...+...+|...++++++.. |.+.. .+.++.++...|++++|+..+++ +..+|+..+...+..++.+|...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22233445799999999876 22233 34499999999999999999999 4556654445689999999999999999
Q ss_pred HHHHHHHHHh
Q 038401 524 ASRIMNRMNK 533 (542)
Q Consensus 524 A~~~~~~~~~ 533 (542)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=1.9e-10 Score=101.08 Aligned_cols=153 Identities=11% Similarity=0.090 Sum_probs=96.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCH-HH---
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEV--KDISVFGCMIELFSR--------NKKYANVIEVFEKMRSAGYFPDS-HI--- 437 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~-~~--- 437 (542)
..++...|++++|+..|+++++..+. .....+..++.++.. .|++++|+..|+++++. .|+. ..
T Consensus 59 g~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 136 (261)
T 3qky_A 59 ARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA 136 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH
Confidence 34445555555555555555554221 123445555666666 66677777777666653 2321 11
Q ss_pred --------------HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCc-hH-HHHHHHHHHhcc----------CChHHHHH
Q 038401 438 --------------IALVLNSYGKLREFETADDLYSEMQEEGCVFS-DQ-VHFQMLSLYGAR----------KDFNMLES 491 (542)
Q Consensus 438 --------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~----------g~~~~A~~ 491 (542)
+..++..|.+.|++++|+..|+++++..+..+ .. ..+.++.+|... |++++|+.
T Consensus 137 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 137 TQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 25667888999999999999999998763322 22 233377888766 88899999
Q ss_pred HHHHH-hcCCCCCc-hhHHHHHHHHHHhhcchhhHHH
Q 038401 492 LFERL-DSDSNINK-KELHHVVAGIYERANRLNDASR 526 (542)
Q Consensus 492 ~~~~~-~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 526 (542)
.++++ ...|+... ..+...+..++...|+++++..
T Consensus 217 ~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 217 LYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 99995 44554322 3566677777777777766544
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.27 E-value=1.3e-10 Score=103.34 Aligned_cols=160 Identities=9% Similarity=-0.034 Sum_probs=128.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhc
Q 038401 369 ETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIA-LVLNSYGK 447 (542)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~ 447 (542)
..+...+...|++++|...|+++++.. +.+...+..++.++...|++++|+..++++... .|+..... .....+..
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHh
Confidence 345566778888899999999988874 357888999999999999999999999998874 46654333 33334667
Q ss_pred cCcHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHH
Q 038401 448 LREFETADDLYSEMQEEGCVFSDQ-VHFQMLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDAS 525 (542)
Q Consensus 448 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 525 (542)
.++.++|...++++++.. |.+. ..+.++.++...|++++|+..+++ +..+|+..+..++..++.+|...|+.++|.
T Consensus 198 ~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 888889999999999987 2233 344499999999999999999999 566777555789999999999999999999
Q ss_pred HHHHHHHh
Q 038401 526 RIMNRMNK 533 (542)
Q Consensus 526 ~~~~~~~~ 533 (542)
..|++...
T Consensus 276 ~~~r~al~ 283 (287)
T 3qou_A 276 SXYRRQLY 283 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988654
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.23 E-value=3.6e-11 Score=95.28 Aligned_cols=142 Identities=8% Similarity=-0.026 Sum_probs=106.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCc
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLRE 450 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 450 (542)
..++...|++++|++.++++.... +.++..+..+...|...|++++|++.|+++++ +.| +..+|..++.+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence 344456678888888888886641 23455667788899999999999999999988 446 56888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHH-HHH-HhcCCCCCchhHHHHHHHHHHhhcc
Q 038401 451 FETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESL-FER-LDSDSNINKKELHHVVAGIYERANR 520 (542)
Q Consensus 451 ~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~-~~~-~~~~~~~~~~~~~~~l~~~~~~~g~ 520 (542)
+++|+..|+++++.+ |.+...+. ++.+|.+.|++++|.+. +++ +..+|+ +..+|.....++...|+
T Consensus 81 ~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~--~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG--SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT--CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhCc
Confidence 999999999999887 22333333 88899999998876654 566 566666 55778888888877774
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.23 E-value=2.9e-08 Score=94.99 Aligned_cols=369 Identities=11% Similarity=0.020 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCC-HHHHHHHHHHHHhC-CCC-CCHHhHHHHHH
Q 038401 21 AYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGM-FDSAISWLQQMEQD-RVS-GDLVLYSNLIE 97 (542)
Q Consensus 21 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~ 97 (542)
.|...+..+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+|+..... |.. .+...|...+.
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 45555544433 8899999999999885 4688899988887776663 35566777776653 432 36677777776
Q ss_pred HHH----hcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Q 038401 98 LAR----KLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENH 173 (542)
Q Consensus 98 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 173 (542)
.+. ..++.+.+..+|++.+......-...|......-.. .....+.+++.+.. +
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~---------------------~ 151 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDTL---------------------P 151 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHHH---------------------H
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHHh---------------------H
Confidence 654 345678889999998874221112223222211111 11111222221110 1
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccC-------CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHH
Q 038401 174 KFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLD-------MAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFG 246 (542)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 246 (542)
.+..|..+++.+...-...+...|...+..-...+ ..+.+..+|+++.... +.+...|...+..+.+.|+.+
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 11112222222111000011223333222211110 0123344444444432 233444444444444455555
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHH-HHHHHHH--H---cCCCC---CHHHHHHHHHHHHhcCCHHH
Q 038401 247 EAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKAT-NLMQEMQ--N---RGIEP---NAITYSTIIAIWGKAGKLDR 317 (542)
Q Consensus 247 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~--~---~~~~p---~~~~~~~l~~~~~~~~~~~~ 317 (542)
.|..+++..... +.+...|... ....+.++.. .+.+... . .+..+ ....|...+....+.++.+.
T Consensus 231 ~ar~i~erAi~~--P~~~~l~~~y----~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 231 KAKKVVERGIEM--SDGMFLSLYY----GLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp HHHHHHHHHHHH--CCSSHHHHHH----HHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHH----HhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHH
Confidence 555555555444 2222222111 1111111111 0110000 0 00000 12345555555555666777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHhcCCC---CCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 038401 318 AAMLFQKLRSSGVEIDPVLYQTMIVAYER-VGLVAHAKRLLHELRQPN---TIPRETAITILARAGRIEEATWVFRQAFD 393 (542)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (542)
|..+|+.+ ... ..+..+|......-.. .++.+.|..+|+...+.. +..+...+....+.|+.+.|..+|+++.
T Consensus 305 AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~- 381 (493)
T 2uy1_A 305 FRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE- 381 (493)
T ss_dssp HHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-
T ss_pred HHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 77777776 221 2234444332222222 235677777776654311 1123334555566677777777777762
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 394 AGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRS 428 (542)
Q Consensus 394 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 428 (542)
.....|...+..-...|+.+.+..+++++.+
T Consensus 382 ----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 ----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567777777776777888888887777764
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.22 E-value=4.3e-10 Score=94.75 Aligned_cols=124 Identities=10% Similarity=0.090 Sum_probs=55.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhcc
Q 038401 406 MIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGAR 483 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~ 483 (542)
++.+|...|++++|+..|+++++. .| +...+..++.++...|++++|+..|+++++.+ |.+...+. ++.+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 555555555555555555555552 23 34455555555555555555555555555544 11112222 44444433
Q ss_pred CC--hHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 484 KD--FNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 484 g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
|. .+.+...++++.. +. +....+..++.++...|++++|+..|+++.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~-~~-~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS-PT-KMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHC---C-CC-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHhC-CC-chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 32 2233333333321 11 011233444555555555555555555555433
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=4.4e-10 Score=100.41 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=67.5
Q ss_pred HHHHHHcCCHHHHHHHHHHhcCC-----C----CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-C----HHHHHHH
Q 038401 341 IVAYERVGLVAHAKRLLHELRQP-----N----TIPRETAITILARAGRIEEATWVFRQAFDAGEVK-D----ISVFGCM 406 (542)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l 406 (542)
...|...|++++|...+.+.... + ...+..+..++...|++++|+..++++++..... + ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33455556666665555543320 0 1122333444445555555555555554431100 0 2344445
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH------H
Q 038401 407 IELFSRN-KKYANVIEVFEKMRSAGYFPD-------SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ------V 472 (542)
Q Consensus 407 ~~~~~~~-g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~ 472 (542)
+.+|... |++++|+..|++.++. .|+ ..++..++..+.+.|++++|+..|+++.+..+..+.. .
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 5555553 5555555555555442 121 1234444555555555555555555555443211110 1
Q ss_pred HHHHHHHHhccCChHHHHHHHHH
Q 038401 473 HFQMLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~ 495 (542)
...++.++...|++++|+..+++
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 11144445555555555555555
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=1.3e-09 Score=84.59 Aligned_cols=129 Identities=12% Similarity=0.163 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHH-HHHHHH
Q 038401 402 VFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHF-QMLSLY 480 (542)
Q Consensus 402 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~ 480 (542)
.|..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++.+.. +.+...+ .++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 35566677777777777777777776632 1245666667777777777777777777777765 1222223 377777
Q ss_pred hccCChHHHHHHHHHHh-cCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 481 GARKDFNMLESLFERLD-SDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 481 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
...|++++|.+.++++. ..|. ....+..++.+|...|++++|...++++.+..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 77888888887777743 3332 34567777888888888888888888877654
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=1.1e-07 Score=90.96 Aligned_cols=369 Identities=9% Similarity=-0.027 Sum_probs=189.4
Q ss_pred CCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCc-HHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHH----HCCCh
Q 038401 103 SDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKL-FKEARLLIEEMREQ-GVK-PDTVSYSTLLNLYV----ENHKF 175 (542)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-g~~-~~~~~~~~l~~~~~----~~g~~ 175 (542)
++++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |.. ++...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7777777777777764 4677777777666655543 34455566665543 322 24555665555433 23455
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 038401 176 VEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLM 255 (542)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 255 (542)
+.+.++|+.........-...|...... ........+.+ ++... .+.+..|..+++.+
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~-------------------~~~~~--~~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKK-------------------IVGDT--LPIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHH-------------------HHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHH-------------------HHHHH--hHHHHHHHHHHHHH
Confidence 6666666666652111001111111110 00001111111 11111 12233444444443
Q ss_pred HhcCCCCcHHHHHHHHHHHHccC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038401 256 QRKEIEQNVVTYNTMIKIYGKSL--E-----HEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSS 328 (542)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (542)
...-...+...|...+..-...+ - .+.+..+|+++.... +.++..|...+..+...|+.+.|..++++....
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 32100113335554444322211 1 234566777766642 345666666666667777777777777777766
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 038401 329 GVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIE 408 (542)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 408 (542)
+.+...+.. |....+.++. ++.+. ..+.. ...+.+ .. .. .......|...+.
T Consensus 243 --P~~~~l~~~----y~~~~e~~~~---~~~l~-----------~~~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~ 294 (493)
T 2uy1_A 243 --SDGMFLSLY----YGLVMDEEAV---YGDLK-----------RKYSM-GEAESA-----EK-VF-SKELDLLRINHLN 294 (493)
T ss_dssp --CCSSHHHHH----HHHHTTCTHH---HHHHH-----------HHTC-----------------C-HHHHHHHHHHHHH
T ss_pred --CCcHHHHHH----HHhhcchhHH---HHHHH-----------HHHHh-hccchh-----hh-hc-ccccHHHHHHHHH
Confidence 333333221 2211111111 11110 00000 000000 00 00 0112356777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCCh
Q 038401 409 LFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLR-EFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDF 486 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~ 486 (542)
.+.+.++.+.|..+|+++ .. ...+...|...+..-...+ +.+.|+.+|+.+++..+..| ..+. .+....+.|+.
T Consensus 295 ~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~--~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 295 YVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST--LLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCH
Confidence 777788899999999988 32 1234455544333223333 68999999999988753222 2333 67777788999
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 487 NMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 487 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
+.|..+++++.+ ....|...++.=...|+.+.+..+++++..
T Consensus 371 ~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998732 356777777777778998888888887663
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=1.2e-08 Score=88.98 Aligned_cols=179 Identities=9% Similarity=-0.029 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038401 143 ARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNC-PLDLTTCNIMIDVYGQLDMAKDADRLFWSMR 221 (542)
Q Consensus 143 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 221 (542)
|...|+++.+.+ +++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 33444445566666666666666666666554432 1244555566666666666666666666665
Q ss_pred HCCCCC-----ChhHHHHHHHHHH--hcC--cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038401 222 KMGIDP-----SVVSYNTLLRVYG--EAE--LFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQN 292 (542)
Q Consensus 222 ~~~~~~-----~~~~~~~ll~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (542)
+. .| +..+...++.++. ..| +..+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 2344444444422 222 566666666666543 23322223333356666666666666665443
Q ss_pred c-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038401 293 R-----G----IEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSS 328 (542)
Q Consensus 293 ~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (542)
. + -+-|+.+...+|......|+ .|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 2 0 02244445444444444554 556666666655
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=1.5e-08 Score=88.40 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 399 DISVFGCMIELFSRNKKYANVIEVFEKMRS 428 (542)
Q Consensus 399 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 428 (542)
++.++-.++......|+ +|.++++++.+
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 44555344444444454 56666666665
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=3.2e-10 Score=100.89 Aligned_cols=227 Identities=12% Similarity=0.045 Sum_probs=149.4
Q ss_pred HhcCHHHHHHHHHHHHh-------CCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhC------CC-CCCHHhHHHHH
Q 038401 31 RAKQWELAHGLFDEMRQ-------RGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQD------RV-SGDLVLYSNLI 96 (542)
Q Consensus 31 ~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 96 (542)
..|+++.|+..|++..+ ...+....++..+...+...|++++|+..+++..+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555544 222234567888888999999999999999887754 21 22355788888
Q ss_pred HHHHhcCCHHHHHHHHHHhHhC------C-CCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHc------CCCC-CHHHH
Q 038401 97 ELARKLSDYSKAISIFSRLKSS------G-IVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQ------GVKP-DTVSY 162 (542)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~ 162 (542)
..+...|++++|...+++.... . .+....++..+...+...|++++|...+++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8999999999999998887754 1 1234667888888999999999999999988764 1122 35677
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhc-------CCCCC-hhhHHHHHHHHhccCC------HHHHHHHHHHHHHCCCCCC
Q 038401 163 STLLNLYVENHKFVEALSVFAEMNEV-------NCPLD-LTTCNIMIDVYGQLDM------AKDADRLFWSMRKMGIDPS 228 (542)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~ 228 (542)
..+...|...|++++|.+.+++..+. ...+. ...+..+.......+. +..+...++.... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 88889999999999999999888653 11222 2233333333333222 2222222221111 11223
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 038401 229 VVSYNTLLRVYGEAELFGEAIHLFRLMQRK 258 (542)
Q Consensus 229 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 258 (542)
..++..+...|...|++++|...+++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788889999999999999999987653
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.16 E-value=1.8e-10 Score=115.53 Aligned_cols=151 Identities=12% Similarity=-0.047 Sum_probs=85.7
Q ss_pred HhcCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCC---CCCHHHHHHHHHHh
Q 038401 310 GKAGKLDRAAMLFQKLR--------SSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPN---TIPRETAITILARA 378 (542)
Q Consensus 310 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~ 378 (542)
...|++++|++.++.+. +.. +.+...+..+..++.+.|++++|...++++.+.+ ...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45666666666666665 321 3344555556666666666666666666654322 22334445555666
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 038401 379 GRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDL 457 (542)
Q Consensus 379 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 457 (542)
|++++|++.|+++++.. +.+...|..+..++...|++++ ++.|+++++. .| +...+..+..++.+.|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666542 2345555566666666666666 6666666552 23 345555566666666666666666
Q ss_pred HHHHHHcC
Q 038401 458 YSEMQEEG 465 (542)
Q Consensus 458 ~~~~~~~~ 465 (542)
|+++.+.+
T Consensus 557 ~~~al~l~ 564 (681)
T 2pzi_A 557 LDEVPPTS 564 (681)
T ss_dssp HHTSCTTS
T ss_pred HHhhcccC
Confidence 66665544
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=3.3e-09 Score=89.51 Aligned_cols=160 Identities=13% Similarity=0.093 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038401 368 RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNK----KYANVIEVFEKMRSAGYFPDSHIIALVLN 443 (542)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 443 (542)
...+...+...+++++|...|+++.+.+ ++..+..|...|.. + ++++|+..|++..+.| +...+..+..
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 3344455555667777777777777653 56667777777776 6 8888888888887744 5667777777
Q ss_pred HHhc----cCcHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHhc----cCChHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038401 444 SYGK----LREFETADDLYSEMQEEGCVFS-DQVHFQMLSLYGA----RKDFNMLESLFERLDSDSNINKKELHHVVAGI 514 (542)
Q Consensus 444 ~~~~----~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 514 (542)
.|.. .+++++|..+|+++.+.+.... ....+.++.+|.. .+++++|..++++....++ ...++..|+.+
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~--~~~a~~~Lg~~ 171 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSR--TGYAEYWAGMM 171 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSC--TTHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHH
Confidence 8876 7888899999998888761100 3344447888877 7788999999988654433 23467788888
Q ss_pred HHhh-c-----chhhHHHHHHHHHhcCC
Q 038401 515 YERA-N-----RLNDASRIMNRMNKRRT 536 (542)
Q Consensus 515 ~~~~-g-----~~~~A~~~~~~~~~~~~ 536 (542)
|... | ++++|+.+|++..+.|.
T Consensus 172 y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 172 FQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8654 3 78899999988887764
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.14 E-value=1.2e-09 Score=107.68 Aligned_cols=143 Identities=8% Similarity=0.006 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHhcCCCCC---CHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038401 348 GLVAHAKRLLHELRQPNTI---PRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFE 424 (542)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 424 (542)
|++++|...+++..+.++. .+..+...+...|++++|.+.++++++.. +.+...+..++.+|...|++++|++.++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5566666666665543332 23444555666666666666666666652 2345666666666666666666666666
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhcc---CChHHHHHHHHH
Q 038401 425 KMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGAR---KDFNMLESLFER 495 (542)
Q Consensus 425 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~---g~~~~A~~~~~~ 495 (542)
++++. .| +...+..++.+|.+.|++++|.+.|+++.+.. +.+...+. ++.++... |++++|.+.+++
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 66653 23 34566666666666666666666666666654 11222222 66666666 666666666666
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=1.5e-09 Score=97.66 Aligned_cols=198 Identities=12% Similarity=0.052 Sum_probs=108.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 038401 277 SLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGK-AGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKR 355 (542)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (542)
.|++++|.+++++..+.. +. .+.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456666777666665431 11 0222 45666666666554 345666777777777
Q ss_pred HHHHhcCC-----C----CCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---c--CHHHHHHHHHHHHhcCCHHHHHH
Q 038401 356 LLHELRQP-----N----TIPRETAITILARAGRIEEATWVFRQAFDAGEV---K--DISVFGCMIELFSRNKKYANVIE 421 (542)
Q Consensus 356 ~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~ 421 (542)
.+.+.... + ...+..+..++...|++++|+..|+++++.... + -..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 76665321 1 112334455566667777777777776654111 1 13455666666666 77777777
Q ss_pred HHHHHHhCCCCC-C----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---CCchHH-HHH-HHHHHhccCChHHHHH
Q 038401 422 VFEKMRSAGYFP-D----SHIIALVLNSYGKLREFETADDLYSEMQEEGC---VFSDQV-HFQ-MLSLYGARKDFNMLES 491 (542)
Q Consensus 422 ~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~-~~~-l~~~~~~~g~~~~A~~ 491 (542)
.|++.++..... + ..++..+...|.+.|++++|+..|+++++... ..+... .+. ++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777776531100 1 24556666667777777777777777665421 011111 222 4555666677777777
Q ss_pred HHHHHhcCCC
Q 038401 492 LFERLDSDSN 501 (542)
Q Consensus 492 ~~~~~~~~~~ 501 (542)
.+++....|.
T Consensus 217 ~~~~al~~p~ 226 (307)
T 2ifu_A 217 CVRESYSIPG 226 (307)
T ss_dssp HHHHHTTSTT
T ss_pred HHHHHhCCCC
Confidence 7777434444
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.10 E-value=6e-10 Score=88.18 Aligned_cols=140 Identities=7% Similarity=-0.007 Sum_probs=107.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 038401 341 IVAYERVGLVAHAKRLLHELRQP---NTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYA 417 (542)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 417 (542)
...+...|++++|+..++..... ++..+..+..+|.+.|++++|++.|+++++.. +.++.+|..++.+|...|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34445567788888888777653 34455667888889999999999999999874 467889999999999999999
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHH-HHHHHHcCCCCchHHHHH-HHHHHhccCC
Q 038401 418 NVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDL-YSEMQEEGCVFSDQVHFQ-MLSLYGARKD 485 (542)
Q Consensus 418 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~-l~~~~~~~g~ 485 (542)
+|+..|+++++ +.| +...+..++..|.+.|++++|.+. ++++++.. |.++..+. ...++...|+
T Consensus 83 ~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCc
Confidence 99999999998 446 568888999999999998876665 58899876 23334444 5667766664
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=6.2e-09 Score=87.63 Aligned_cols=166 Identities=12% Similarity=0.030 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHH----------------HHHHHhccCCHHHHHHHHHHHH
Q 038401 18 SVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYST----------------LITCFGKEGMFDSAISWLQQME 81 (542)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~ 81 (542)
++..+......+.+.|++++|+..|+...+..+. +...|.. +..++.+.|++++|+..|++..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555666778889999999999998886322 3445555 5666666666666666666666
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCc--HHHHHHHHHHHHHcCCCCCH
Q 038401 82 QDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKL--FKEARLLIEEMREQGVKPDT 159 (542)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~~~~ 159 (542)
+..+ .+...+..+..++...|++++|...|++..+.. +.+..++..+..++...|. .+.+...++.... ..|..
T Consensus 82 ~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 82 QKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred HHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 5532 245566666666666666666666666666543 3345555555555544332 2233333433322 11222
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhc
Q 038401 160 VSYSTLLNLYVENHKFVEALSVFAEMNEV 188 (542)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 188 (542)
..+..+..++...|++++|+..|++..+.
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22333344444555666666666665553
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=6e-08 Score=85.63 Aligned_cols=151 Identities=7% Similarity=0.035 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc------
Q 038401 379 GRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYA--NVIEVFEKMRSAGYFPDSHIIALVLNSYGKLRE------ 450 (542)
Q Consensus 379 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------ 450 (542)
+++++++++++++++.. +.+..+|+.-..++...|.++ ++++.++++++.+. -|...|..-...+...|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 67788888888888874 468888988888888888888 99999999998542 366788877777777776
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHH-HHHHHHHHhcC--CCCCchhHHHHHHHHHHhhcchhhHHH
Q 038401 451 FETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNM-LESLFERLDSD--SNINKKELHHVVAGIYERANRLNDASR 526 (542)
Q Consensus 451 ~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~-A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~ 526 (542)
++++++.+++++..+ |.+...+. +..++.+.|+..+ +..+.+++... .++....++..++++|...|+.++|++
T Consensus 202 ~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 899999999999887 34444444 7778888777544 55677764332 123356788899999999999999999
Q ss_pred HHHHHHh
Q 038401 527 IMNRMNK 533 (542)
Q Consensus 527 ~~~~~~~ 533 (542)
+++++.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=7.9e-09 Score=88.26 Aligned_cols=184 Identities=11% Similarity=-0.015 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCC------HHH
Q 038401 299 AITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVE-I-DPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIP------RET 370 (542)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~ 370 (542)
...+..+...+...|++++|...|+.+.+.... + ....+..+..++.+.|++++|+..++++.+..+.. +..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666677888888888888888775322 1 13566667777888888888888887765422221 112
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HH------------
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HI------------ 437 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~------------ 437 (542)
+..++...|.. ....|..+...+...|++++|+..|+++++. .|+. ..
T Consensus 84 ~g~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDS-----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHH
Confidence 22233221100 0000111122223345566666666666552 2322 11
Q ss_pred -----HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCch--HHHHHHHHHHhccCChHHHHHHHHHHhcCCC
Q 038401 438 -----IALVLNSYGKLREFETADDLYSEMQEEGCVFSD--QVHFQMLSLYGARKDFNMLESLFERLDSDSN 501 (542)
Q Consensus 438 -----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 501 (542)
...++..|.+.|++++|+..|+++++..+..|. ...+.++.++.+.|++++|++.++.+...++
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 134567788999999999999999998733332 2233489999999999999999999765543
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=1.2e-08 Score=78.90 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 038401 21 AYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELAR 100 (542)
Q Consensus 21 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (542)
.|..+...+...|++++|..+|+.+.+.+. .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 355556666666666666666666665432 245555566666666666666666666665543 223445555555555
Q ss_pred hcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038401 101 KLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMRE 152 (542)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 152 (542)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5566666655555555432 22344445555555555555555555555444
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=1.1e-09 Score=109.75 Aligned_cols=173 Identities=9% Similarity=-0.006 Sum_probs=137.1
Q ss_pred HHcCCHHHHHHHHHHhc--------CC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 038401 345 ERVGLVAHAKRLLHELR--------QP---NTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRN 413 (542)
Q Consensus 345 ~~~~~~~~a~~~~~~~~--------~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 413 (542)
...|++++|.+.+++.. .. +...+..+...+...|++++|++.|+++++.. +.+...|..++.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999999987 43 33345566788999999999999999999874 35788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHH
Q 038401 414 KKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESL 492 (542)
Q Consensus 414 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 492 (542)
|++++|++.|+++++. .| +...+..+..++.+.|++++ +..|+++++.++. ....++.++.++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999984 46 45788899999999999999 9999999998721 122334499999999999999999
Q ss_pred HHHH-hcCCCCCchhHHHHHHHHHHhhcchhhH
Q 038401 493 FERL-DSDSNINKKELHHVVAGIYERANRLNDA 524 (542)
Q Consensus 493 ~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A 524 (542)
+++. ..+|. ...++..++.+|...|+.+++
T Consensus 557 ~~~al~l~P~--~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 557 LDEVPPTSRH--FTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HHTSCTTSTT--HHHHHHHHHHHTC-------C
T ss_pred HHhhcccCcc--cHHHHHHHHHHHHccCCCCCC
Confidence 9995 44444 567888999999887774433
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=1.3e-08 Score=91.46 Aligned_cols=221 Identities=13% Similarity=0.135 Sum_probs=140.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038401 242 AELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGK-SLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAM 320 (542)
Q Consensus 242 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 320 (542)
.|++++|.+++++..+... .. +.+ .++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4556666666666554311 00 111 35666666665544 234555667777766
Q ss_pred HHHHHHhcCC---C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhcC----CC-----CCCHHHHHHHHHHhCCHHHHHH
Q 038401 321 LFQKLRSSGV---E--IDPVLYQTMIVAYERVGLVAHAKRLLHELRQ----PN-----TIPRETAITILARAGRIEEATW 386 (542)
Q Consensus 321 ~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-----~~~~~~l~~~~~~~g~~~~A~~ 386 (542)
.|....+... . .-..++..+..+|...|++++|...+++... .+ ...+..+..++.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6666543210 0 0134566667777788888888877776542 11 1123455667777 99999999
Q ss_pred HHHHHHHcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 038401 387 VFRQAFDAGEVK-----DISVFGCMIELFSRNKKYANVIEVFEKMRSA----GYFPD-SHIIALVLNSYGKLREFETADD 456 (542)
Q Consensus 387 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 456 (542)
.|+++++..... ...++..+...|...|++++|+..|+++++. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998753211 1467888999999999999999999999863 21111 2356677778888899999999
Q ss_pred HHHHHHHcCCCCchHH---HHH-HHHHHhccCChHHHHH
Q 038401 457 LYSEMQEEGCVFSDQV---HFQ-MLSLYGARKDFNMLES 491 (542)
Q Consensus 457 ~~~~~~~~~~~~~~~~---~~~-l~~~~~~~g~~~~A~~ 491 (542)
.|++++ ..+..+... ... ++..+ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 653222221 122 44444 5677766666
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.02 E-value=2.9e-09 Score=83.68 Aligned_cols=95 Identities=15% Similarity=-0.022 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 038401 399 DISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQML 477 (542)
Q Consensus 399 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 477 (542)
+...+..++..+.+.|++++|+..|+++++. .| +...|..++.+|...|++++|+..|+++++..+.. ...++.++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cHHHHHHH
Confidence 3455666666677777777777777777763 34 45666667777777777777777777777765211 12233367
Q ss_pred HHHhccCChHHHHHHHHHH
Q 038401 478 SLYGARKDFNMLESLFERL 496 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~ 496 (542)
.+|...|++++|+..|++.
T Consensus 112 ~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777773
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=1.1e-07 Score=80.19 Aligned_cols=175 Identities=9% Similarity=-0.047 Sum_probs=100.7
Q ss_pred hhhhhHHHHhhCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC----CHHHHHHHH
Q 038401 2 SVAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEG----MFDSAISWL 77 (542)
Q Consensus 2 A~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 77 (542)
|++.|....+. -++..+..+...+...+++++|...|+...+.| ++..+..+...|.. + ++++|+++|
T Consensus 5 A~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 55555555532 356666666666666777777777777766654 45556666666655 4 667777777
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHhHhCCCC-ccHhHHHHHHHHHhc----cCcHHHHHHHHH
Q 038401 78 QQMEQDRVSGDLVLYSNLIELARK----LSDYSKAISIFSRLKSSGIV-PDLVAYNTMINVFGK----AKLFKEARLLIE 148 (542)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 148 (542)
++..+.| ++..+..+...|.. .+++++|..+|++..+.|.. ..+..+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 45555555555554 56666666666666655411 114455555555555 556666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHC-C-----ChHHHHHHHHHHHhcC
Q 038401 149 EMREQGVKPDTVSYSTLLNLYVEN-H-----KFVEALSVFAEMNEVN 189 (542)
Q Consensus 149 ~~~~~g~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 189 (542)
+..+. ..+...+..|...|... | ++++|...|+...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66554 12333445555555432 2 5566666666655544
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.01 E-value=1.2e-08 Score=86.35 Aligned_cols=123 Identities=9% Similarity=-0.018 Sum_probs=94.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 038401 370 TAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLR 449 (542)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 449 (542)
.....+...|++++|+..|++++ .|+...+..++.++...|++++|+..|+++++.. +.+...+..++.+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34566778889999998888874 4577888888888888999999999998888743 235677888888888899
Q ss_pred cHHHHHHHHHHHHHcCCCCc--------------h-HHHHHHHHHHhccCChHHHHHHHHHHh
Q 038401 450 EFETADDLYSEMQEEGCVFS--------------D-QVHFQMLSLYGARKDFNMLESLFERLD 497 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~~~~~--------------~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (542)
++++|...|+++.+..+..+ . ...+.++.++...|++++|...+++..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999998888652111 1 233338888888899999988888843
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=1.8e-08 Score=89.52 Aligned_cols=161 Identities=7% Similarity=-0.031 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHH---HHH
Q 038401 298 NAITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETA---ITI 374 (542)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~ 374 (542)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++...++...... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 44555666666777788888888888777764 33566677777777777777777777776654322111111 111
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcH
Q 038401 375 LARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD---SHIIALVLNSYGKLREF 451 (542)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~ 451 (542)
+...++.+.|...++++++.. +.+...+..+..++...|++++|+..|+++++.. |+ ...+..++..+...|+.
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcCCC
Confidence 233344444455555554442 2344445555555555555555555555555422 22 23444444455555555
Q ss_pred HHHHHHHHHHH
Q 038401 452 ETADDLYSEMQ 462 (542)
Q Consensus 452 ~~A~~~~~~~~ 462 (542)
++|...|++.+
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 55555444443
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=6.6e-09 Score=79.17 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHH-HHH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHF-QML 477 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~ 477 (542)
...+...+..|.+.|++++|++.|+++++. .| +...|..++.+|.+.|++++|+..++++++.+ |.....+ .++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg 88 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHH
Confidence 345666777778888888888888887773 34 56777777778888888888888888887766 2222233 377
Q ss_pred HHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHH
Q 038401 478 SLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGI 514 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~ 514 (542)
.++...|++++|++.+++ +..+|+ +..++..++.+
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~--~~~a~~~l~~~ 124 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPS--NEEAREGVRNC 124 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcC--CHHHHHHHHHh
Confidence 788888888888888887 455555 44555555443
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.99 E-value=4.8e-08 Score=87.24 Aligned_cols=161 Identities=9% Similarity=0.027 Sum_probs=111.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HHHHHHH
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEVKD-----ISVFGCMIELFSRNKKYANVIEVFEKMRSAG---YFPD--SHIIALV 441 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~~~~l 441 (542)
+..+...|++++|.+.+++.++.....+ ...+..++..+...|++++|+..++++.+.. ..+. ..++..+
T Consensus 82 ~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 2qfc_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4456677888888888887776532211 1223445666778889999999999888632 1122 3578888
Q ss_pred HHHHhccCcHHHHHHHHHHHHH---cCCCCch---HHHHHHHHHHhccCChHHHHHHHHHHhc---CCC--CCchhHHHH
Q 038401 442 LNSYGKLREFETADDLYSEMQE---EGCVFSD---QVHFQMLSLYGARKDFNMLESLFERLDS---DSN--INKKELHHV 510 (542)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~~~~ 510 (542)
+..|...|++++|...|+++.+ .....+. ...+.++.+|...|++++|...+++... ..+ ......|..
T Consensus 162 g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~ 241 (293)
T 2qfc_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 8999999999999999999883 3211121 2233388999999999999999988321 111 112467889
Q ss_pred HHHHHHhhcchhhH-HHHHHHHH
Q 038401 511 VAGIYERANRLNDA-SRIMNRMN 532 (542)
Q Consensus 511 l~~~~~~~g~~~~A-~~~~~~~~ 532 (542)
++.+|...|++++| ..++++..
T Consensus 242 lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999999999 77787754
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=7.1e-09 Score=78.99 Aligned_cols=102 Identities=14% Similarity=0.033 Sum_probs=86.8
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhH
Q 038401 431 YFPDS-HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKEL 507 (542)
Q Consensus 431 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~ 507 (542)
+.|+. ..+...+..|.+.|++++|++.|+++++.+ |.+...+. ++.++...|++++|+..+++ +..+|. ...+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a 83 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK--FIKG 83 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--hhHH
Confidence 55653 678888999999999999999999999987 23344444 99999999999999999999 555665 5689
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 508 HHVVAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 508 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
|..++.+|...|++++|++.|+++.+..+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999988653
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.96 E-value=2.4e-08 Score=80.57 Aligned_cols=129 Identities=9% Similarity=-0.011 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLS 478 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~ 478 (542)
...+..++..+...|++++|...|++.++.. +.+...+..++.++...|++++|...++++.+.. +.+...+. ++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 4456777788888888888888888888742 2256778888888888889999999998888876 22233333 888
Q ss_pred HHhccCChHHHHHHHHHH-hcCCCCCchhHH--HHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 479 LYGARKDFNMLESLFERL-DSDSNINKKELH--HVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
++...|++++|...+++. ...|. ....+ ..++..+...|++++|++.+++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888899999999888884 44444 23344 4455557788899999888887543
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=8.5e-09 Score=84.20 Aligned_cols=161 Identities=10% Similarity=0.039 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HH
Q 038401 22 YNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIEL-AR 100 (542)
Q Consensus 22 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 100 (542)
+..+...+.+.|++++|...|+...+..+. +...+..+...+...|++++|+..+++.....+ +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 445556667777777777777776654322 556677777777777777777777777655432 33322222111 11
Q ss_pred hcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCChHHHH
Q 038401 101 KLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKP-DTVSYSTLLNLYVENHKFVEAL 179 (542)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~ 179 (542)
..++...|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2122233455565555442 2245556666666666666666666666666543221 2345555666666666666666
Q ss_pred HHHHHHH
Q 038401 180 SVFAEMN 186 (542)
Q Consensus 180 ~~~~~~~ 186 (542)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=5.6e-07 Score=79.47 Aligned_cols=173 Identities=10% Similarity=0.100 Sum_probs=99.1
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC--CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH----Hhc---
Q 038401 32 AKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEG--MFDSAISWLQQMEQDRVSGDLVLYSNLIELA----RKL--- 102 (542)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 102 (542)
....++|+..++.++..++. +..+|+.--..+...| ++++++++++.++...++ +..+|+.-..++ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 33446788888888876543 5667777777777777 888888888887776543 455555544444 334
Q ss_pred CCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC------
Q 038401 103 SDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFK--EARLLIEEMREQGVKPDTVSYSTLLNLYVENHK------ 174 (542)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~------ 174 (542)
+++++++.+++.+.+.. +.+..+|+.-...+.+.|.++ ++++.++++.+... -+...|+.....+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 56666666666666543 345555555555555555555 66666666665532 245555544444444443
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCC
Q 038401 175 FVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDM 209 (542)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (542)
++++++.++.+...+ +-|...|+-.-..+.+.|.
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 445555555544443 2344444444444444443
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.95 E-value=2.3e-07 Score=82.77 Aligned_cols=162 Identities=9% Similarity=-0.011 Sum_probs=112.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCC-CcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGE-VKDI----SVFGCMIELFSRNKKYANVIEVFEKMRSAGYF-PD----SHIIALV 441 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 441 (542)
+..+...|++++|...++++.+... .|+. ..+..++..+...|++++|+..|+++++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3445667788888888887776422 1221 13334666777788999999999999874221 22 2468888
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcC----CCCchHH-HHH-HHHHHhccCChHHHHHHHHHHh----cCCC-CCchhHHHH
Q 038401 442 LNSYGKLREFETADDLYSEMQEEG----CVFSDQV-HFQ-MLSLYGARKDFNMLESLFERLD----SDSN-INKKELHHV 510 (542)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~-~~~-l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~ 510 (542)
+..|...|++++|..+|+++++.. ...+... .+. ++.+|...|++++|+..+++.. .... ......|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 899999999999999999988521 1122222 333 8899999999999999998832 1111 112578999
Q ss_pred HHHHHHhhcc-hhhHHHHHHHHHh
Q 038401 511 VAGIYERANR-LNDASRIMNRMNK 533 (542)
Q Consensus 511 l~~~~~~~g~-~~~A~~~~~~~~~ 533 (542)
++.+|...|+ +++|.+.++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999995 6999999988654
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.92 E-value=1.8e-08 Score=91.71 Aligned_cols=129 Identities=16% Similarity=0.101 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038401 399 DISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD----------------SHIIALVLNSYGKLREFETADDLYSEMQ 462 (542)
Q Consensus 399 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 462 (542)
+...+..++..+...|++++|+..|+++++. .|+ ...|..+..+|.+.|++++|+..+++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567778888888888888888888888874 343 4778888888899999999999999998
Q ss_pred HcCCCCchHH-HHHHHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhH-HHHHHHHHh
Q 038401 463 EEGCVFSDQV-HFQMLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDA-SRIMNRMNK 533 (542)
Q Consensus 463 ~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 533 (542)
+.. |.+.. .+.++.+|...|++++|+..|++ +..+|. ...++..++.++...|++++| ...+++|..
T Consensus 224 ~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 ELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN--NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 22333 33388889999999999999988 455554 457888889999999998888 456666643
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=6.1e-08 Score=83.42 Aligned_cols=181 Identities=13% Similarity=-0.002 Sum_probs=97.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHhcCCCC----------CC------
Q 038401 311 KAGKLDRAAMLFQKLRSSGVEIDPVLYQTM-------IVAYERVGLVAHAKRLLHELRQPNT----------IP------ 367 (542)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~----------~~------ 367 (542)
..++...|.+.|.++.... +-....|..+ ...+.+.++..+++..+..-....+ ..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788888999998888874 3356677666 3444444444455444444332100 00
Q ss_pred --------HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHH
Q 038401 368 --------RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD--SHI 437 (542)
Q Consensus 368 --------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~ 437 (542)
.......+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0123445556666666666666665432 222244444555666666666666666443311 111 124
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCc--h-HHHHHHHHHHhccCChHHHHHHHHHH
Q 038401 438 IALVLNSYGKLREFETADDLYSEMQEEGCVFS--D-QVHFQMLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (542)
+..+..++...|++++|+..|+++.... ..| . ...+..+.++.+.|+.++|...|+++
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555666666666666666666665322 102 1 12333566666666666666666664
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.89 E-value=6.4e-08 Score=74.60 Aligned_cols=118 Identities=15% Similarity=0.087 Sum_probs=95.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH
Q 038401 397 VKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ 475 (542)
Q Consensus 397 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 475 (542)
+.+...+..++..+...|++++|+..|+++.+. .| +...+..++.++...|++++|...++++.+.. +.+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~ 88 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYT 88 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHH
Confidence 345778888999999999999999999999884 34 67888889999999999999999999999876 22333333
Q ss_pred -HHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcc
Q 038401 476 -MLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIYERANR 520 (542)
Q Consensus 476 -l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~ 520 (542)
++.++...|++++|++.+++. ...|. ....+..++.++...|+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSS--CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGG--GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcC
Confidence 889999999999999999994 44443 45678888888887764
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.88 E-value=4.5e-09 Score=82.58 Aligned_cols=94 Identities=11% Similarity=0.066 Sum_probs=43.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHH
Q 038401 437 IIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGI 514 (542)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~ 514 (542)
.+..++..+.+.|++++|+..|+++++.+ |.+...+. ++.++...|++++|+..+++ +..+|+ ...+|+.++.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--CcHHHHHHHHH
Confidence 34444444455555555555555555443 11222222 44555555555555555555 233333 22344455555
Q ss_pred HHhhcchhhHHHHHHHHHhc
Q 038401 515 YERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 515 ~~~~g~~~~A~~~~~~~~~~ 534 (542)
|...|++++|+..|+++.+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555554443
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=6.7e-07 Score=79.73 Aligned_cols=156 Identities=6% Similarity=-0.020 Sum_probs=109.5
Q ss_pred HHHHHHcCCHHHHHHHHHHhcCCCCCCHH---------HHHHHHHHhCCHHHHHHHHHHHHHcCCC-cC----HHHHHHH
Q 038401 341 IVAYERVGLVAHAKRLLHELRQPNTIPRE---------TAITILARAGRIEEATWVFRQAFDAGEV-KD----ISVFGCM 406 (542)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 406 (542)
+..+...|++++|...+++.......... .+...+...|++++|+..++++++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44556667777777776665543222111 2334455667889999999999874322 22 3468999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC----CCCchHHHHH-
Q 038401 407 IELFSRNKKYANVIEVFEKMRSA-----GYFPD-SHIIALVLNSYGKLREFETADDLYSEMQEEG----CVFSDQVHFQ- 475 (542)
Q Consensus 407 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~- 475 (542)
+.+|...|++++|+..|+++++. +..+. ..++..++..|.+.|++++|..+++++++.. ........+.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999841 11122 2478889999999999999999999988642 1111233344
Q ss_pred HHHHHhccCC-hHHHHHHHHHH
Q 038401 476 MLSLYGARKD-FNMLESLFERL 496 (542)
Q Consensus 476 l~~~~~~~g~-~~~A~~~~~~~ 496 (542)
++.++.+.|+ +++|.+.+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 8999999995 69999999884
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=1.7e-08 Score=79.42 Aligned_cols=111 Identities=11% Similarity=0.010 Sum_probs=82.9
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 387 VFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.|+++++.. +.+...+..++..+...|++++|+..|++++.. .| +...|..++.+|...|++++|+..|+++++.+
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555432 235667777888888999999999999998874 35 66788888889999999999999999998876
Q ss_pred CCCchHHHHHHHHHHhccCChHHHHHHHHHH-hcCCC
Q 038401 466 CVFSDQVHFQMLSLYGARKDFNMLESLFERL-DSDSN 501 (542)
Q Consensus 466 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 501 (542)
+. ....++.++.++...|++++|+..+++. ...|+
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 22 1223334888999999999999999884 44444
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=2.9e-08 Score=83.23 Aligned_cols=157 Identities=8% Similarity=-0.012 Sum_probs=98.0
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCc
Q 038401 376 ARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA----GYFP-DSHIIALVLNSYGKLRE 450 (542)
Q Consensus 376 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~ 450 (542)
...|++++|.+.++.+.. ........+..+...+...|++++|...+++.++. +..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345777777774444433 22245667777778888888888888888877652 2112 23566677777888888
Q ss_pred HHHHHHHHHHHHHc---CCCCc-h-HHHHH-HHHHHhccCChHHHHHHHHHHhc---CCCCCc--hhHHHHHHHHHHhhc
Q 038401 451 FETADDLYSEMQEE---GCVFS-D-QVHFQ-MLSLYGARKDFNMLESLFERLDS---DSNINK--KELHHVVAGIYERAN 519 (542)
Q Consensus 451 ~~~A~~~~~~~~~~---~~~~~-~-~~~~~-l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~l~~~~~~~g 519 (542)
+++|...++++.+. .+..+ . ...+. ++.++...|++++|...+++... ..+... ...+..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888887765 21112 1 11222 77788888888888888877321 111111 234577888888888
Q ss_pred chhhHHHHHHHHHh
Q 038401 520 RLNDASRIMNRMNK 533 (542)
Q Consensus 520 ~~~~A~~~~~~~~~ 533 (542)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877654
No 130
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=8.6e-08 Score=94.52 Aligned_cols=154 Identities=8% Similarity=-0.115 Sum_probs=100.2
Q ss_pred hcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 038401 32 AKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISI 111 (542)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 111 (542)
.|++++|...|++..+.... +...|..+...+...|++++|.+.+++..+..+ .+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36777788888777765322 566777777788888888888888888777642 3566777777888888888888888
Q ss_pred HHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC---CChHHHHHHHHHHHhc
Q 038401 112 FSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVEN---HKFVEALSVFAEMNEV 188 (542)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 188 (542)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88777653 3456677777788888888888888888877653 23566777777778887 8888888888887765
Q ss_pred C
Q 038401 189 N 189 (542)
Q Consensus 189 ~ 189 (542)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=1.3e-06 Score=77.90 Aligned_cols=150 Identities=8% Similarity=0.006 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-
Q 038401 380 RIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYA--------NVIEVFEKMRSAGYFPDSHIIALVLNSYGKLRE- 450 (542)
Q Consensus 380 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~- 450 (542)
++++++++++++++.. +.+..+|+.-..++.+.|.++ ++++.++++++.+. -|...|+.-...+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc
Confidence 4566666666666653 356666766666666666655 77777777777431 256677777666666665
Q ss_pred ------HHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCCh--------------------HHHHHHHHHHhcCC---
Q 038401 451 ------FETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDF--------------------NMLESLFERLDSDS--- 500 (542)
Q Consensus 451 ------~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~--------------------~~A~~~~~~~~~~~--- 500 (542)
++++++++++++... |.+...+. +..++.+.|.. .+..+....+....
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred ccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 678888888887766 33334443 55555555543 22333333332221
Q ss_pred --CCCchhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 501 --NINKKELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 501 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
......+...++++|...|+.++|.++++.+.+
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 133456778888888888888888888888653
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.85 E-value=1.2e-08 Score=80.41 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=88.5
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-Hhc
Q 038401 422 VFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDS 498 (542)
Q Consensus 422 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~ 498 (542)
.|+++++ +.| +...+..++..+...|++++|+..|++++..+ |.+...+. ++.++...|++++|+..+++ +..
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4556655 445 34677788889999999999999999999987 23334444 99999999999999999999 455
Q ss_pred CCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 499 DSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 499 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
+|+ ....+..++.+|...|++++|+..|+++.+...
T Consensus 85 ~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 85 DIX--EPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp STT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 565 457899999999999999999999999887543
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.84 E-value=7.7e-08 Score=73.84 Aligned_cols=120 Identities=6% Similarity=-0.027 Sum_probs=94.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHH-HHH
Q 038401 398 KDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVH-FQM 476 (542)
Q Consensus 398 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 476 (542)
.+...+..++..+...|++++|+..++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+... +.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ 86 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHH
Confidence 346677888888999999999999999998743 2356788888889999999999999999999876 222333 338
Q ss_pred HHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchh
Q 038401 477 LSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIYERANRLN 522 (542)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~ 522 (542)
+.++...|++++|...+++. ...|. ....+..++.++...|+++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPD--NETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHhcCC
Confidence 88999999999999999994 44444 4567888899988888753
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=2.8e-07 Score=77.83 Aligned_cols=128 Identities=11% Similarity=0.009 Sum_probs=97.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 038401 337 YQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKY 416 (542)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 416 (542)
+..+...+...|++++|...+++...+++..+..+...+...|++++|+..++++++.. +.+...+..++.++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455566677777777777777665555555666777778888888888888888764 45678888899999999999
Q ss_pred HHHHHHHHHHHhCCC--------------CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 417 ANVIEVFEKMRSAGY--------------FP-DSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 417 ~~A~~~~~~~~~~~~--------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
++|+..|+++.+... .| ....+..++.+|...|++++|...|+++.+..
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999987421 11 12677888889999999999999999999876
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=1.4e-07 Score=76.07 Aligned_cols=125 Identities=14% Similarity=-0.024 Sum_probs=97.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 038401 370 TAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLR 449 (542)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 449 (542)
.+...+...|++++|...|+++++.. +.+...+..++.++...|++++|+..+++..+.. +.+...+..++.++...|
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 44566777888888888888888763 3568888889999999999999999999998843 235678888899999999
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH
Q 038401 450 EFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 496 (542)
++++|...++++.+..+..+...... .+..+...|++++|++.+++.
T Consensus 96 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 96 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 99999999999998763222221112 455577889999999888874
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.82 E-value=3.3e-08 Score=80.77 Aligned_cols=123 Identities=10% Similarity=0.126 Sum_probs=95.4
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH-HhccCcH-
Q 038401 375 LARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNS-YGKLREF- 451 (542)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 451 (542)
+...|++++|...++++++.. +.+...|..++.+|...|++++|+..|+++.+.. | +...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 356789999999999998874 4678889999999999999999999999998743 4 56778888888 7788998
Q ss_pred -HHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHH-hcCCC
Q 038401 452 -ETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERL-DSDSN 501 (542)
Q Consensus 452 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 501 (542)
++|...++++++..+. .....+.++.++...|++++|...++++ ...|.
T Consensus 97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 9999999999998621 1223333889999999999999999994 44554
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.81 E-value=1.2e-08 Score=85.10 Aligned_cols=156 Identities=6% Similarity=-0.030 Sum_probs=99.1
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC--------------HHHHHH
Q 038401 376 ARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGY-FPD--------------SHIIAL 440 (542)
Q Consensus 376 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--------------~~~~~~ 440 (542)
...|+++.+.+.++...+. .......+..++..+...|++++|+..|+++++... .|+ ...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp -------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 3345555555554433221 112345677778888888999999999998887321 110 267788
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhh
Q 038401 441 VLNSYGKLREFETADDLYSEMQEEGCVFSDQV-HFQMLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIYERA 518 (542)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 518 (542)
+..+|...|++++|+..++++++.. +.+.. .+.++.++...|++++|+..+++. ...|. ...++..++.++...
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN--NLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHH
Confidence 8889999999999999999999876 22333 333889999999999999999994 44554 567888899999999
Q ss_pred cchhhHH-HHHHHHHhcCC
Q 038401 519 NRLNDAS-RIMNRMNKRRT 536 (542)
Q Consensus 519 g~~~~A~-~~~~~~~~~~~ 536 (542)
|+.+++. ..+++|..++.
T Consensus 170 ~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 170 KEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHC--------------
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 9888887 66666665543
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.80 E-value=2.7e-08 Score=75.94 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCch------HH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSD------QV 472 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~ 472 (542)
...+..++..+.+.|++++|++.|+++++ +.| +...|..++.+|.+.|++++|+..++++++..+..+. ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34566677777777777777777777776 334 4566667777777777777777777777664311110 01
Q ss_pred HHHHHHHHhccCChHHHHHHHHH
Q 038401 473 HFQMLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~ 495 (542)
...++.++...|++++|++.+++
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 22256666666777777766666
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=2.7e-07 Score=69.97 Aligned_cols=115 Identities=13% Similarity=0.215 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHH-HHHH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHF-QMLS 478 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~ 478 (542)
...+..++..+...|++++|++.++++.+.. +.+..++..++..+...|++++|..+++++.+.. +.+...+ .++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHH
Confidence 5677778888888899999999988888743 2356777888888888899999999998888875 2223333 3888
Q ss_pred HHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhc
Q 038401 479 LYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIYERAN 519 (542)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g 519 (542)
++...|++++|...++++ ...|. ....+..++.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPN--NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcc
Confidence 888899999999888884 44443 4466777777776544
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.78 E-value=1.3e-06 Score=77.83 Aligned_cols=125 Identities=8% Similarity=0.025 Sum_probs=92.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCC---cC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHH
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEV---KD--ISVFGCMIELFSRNKKYANVIEVFEKMRSA-GYFPD-----SHIIAL 440 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~ 440 (542)
...+...|++++|+..++++++.... +. ..+++.++..|...|++++|+..|+++.+. ...|+ ..++..
T Consensus 122 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence 34455667888888888888753221 11 458889999999999999999999998731 01122 257888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCC---C-CchHHHHH-HHHHHhccCChHHH-HHHHHHH
Q 038401 441 VLNSYGKLREFETADDLYSEMQEEGC---V-FSDQVHFQ-MLSLYGARKDFNML-ESLFERL 496 (542)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~~~~~~~---~-~~~~~~~~-l~~~~~~~g~~~~A-~~~~~~~ 496 (542)
++.+|...|++++|+.+++++++... . ......+. ++.+|...|++++| ...+++.
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 99999999999999999999886530 0 11133344 89999999999999 7778773
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.76 E-value=1.2e-07 Score=77.43 Aligned_cols=118 Identities=10% Similarity=0.075 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHH-HhccCCh--HH
Q 038401 413 NKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSL-YGARKDF--NM 488 (542)
Q Consensus 413 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~-~~~~g~~--~~ 488 (542)
.|++++|+..+++..+.. +.+...+..++.+|...|++++|...|+++.+.. |.+...+. ++.+ +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 445555555555554421 1133445555555555555555555555555543 11112222 4444 4445554 55
Q ss_pred HHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 489 LESLFERL-DSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 489 A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
|+..+++. ...|. ....+..++.+|...|++++|...++++.+..
T Consensus 100 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSN--EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCC--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 55555552 22232 23445555555555555555555555554443
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.74 E-value=9.3e-08 Score=72.16 Aligned_cols=94 Identities=10% Similarity=-0.038 Sum_probs=57.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHH-HHHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHH
Q 038401 439 ALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHF-QMLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYE 516 (542)
Q Consensus 439 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 516 (542)
..++..+.+.|++++|+..++++++.. |.+...+ .++.++...|++++|+..+++ +..+|+ ...++..++.+|.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 344556666677777777777776655 1222222 266667777777777777766 344444 3456667777777
Q ss_pred hhcchhhHHHHHHHHHhcCC
Q 038401 517 RANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~~ 536 (542)
..|++++|+..++++.+..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 77777777777777666543
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=7.4e-06 Score=73.10 Aligned_cols=183 Identities=8% Similarity=0.076 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 038401 21 AYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEG-MFDSAISWLQQMEQDRVSGDLVLYSNLIELA 99 (542)
Q Consensus 21 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (542)
.++.+-....+.+..++|+++++.++..++. +..+|+.--..+...| .+++++++++.++...++ +..+|+.-..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3444444445556667899999999987654 6777888877777777 599999999999887644 777888777777
Q ss_pred Hhc-C-CHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038401 100 RKL-S-DYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFK--------EARLLIEEMREQGVKPDTVSYSTLLNLY 169 (542)
Q Consensus 100 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 169 (542)
... + ++++++++++.+.+.. +.+..+|+.-...+.+.+.++ ++++.++++.+... -|...|+-....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 776 6 7889999999988764 446667765555544444444 77777777777642 3667777766666
Q ss_pred HHCCC-------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccC
Q 038401 170 VENHK-------FVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLD 208 (542)
Q Consensus 170 ~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 208 (542)
.+.++ ++++++.+++..... +-|...|+-+-..+.+.|
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 66665 466677776666654 345566655444444433
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=1.3e-07 Score=83.58 Aligned_cols=190 Identities=8% Similarity=0.014 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 038401 333 DPVLYQTMIVAYERVGLVAHAKRLLHELRQP---NTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIEL 409 (542)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (542)
+...+..+...+.+.|++++|...+++.... +...+..+..++.+.|++++|+..++++++.. +.+...+..++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5667778888889999999999999887653 33345566778888999999999999998863 3567888888999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChH
Q 038401 410 FSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFN 487 (542)
Q Consensus 410 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~ 487 (542)
+...|++++|+..|+++.+.+ |+. ..+...+.... ...++..+.. ..... .+++..... +...+ .|+++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~-~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSAL---RIAKKKRWNS-IEERR-IHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHH---HHHHHHHHHH-HHHTC-CCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHH---HHHHHHHHHH-HHHHH-HhhhHHHHHHHHHHH--HHHHH
Confidence 999999999999999887632 321 01111111111 1112222222 22222 223333333 43333 68899
Q ss_pred HHHHHHHHH-hcCCCCCchhHHHHHHHHHHhh-cchhhHHHHHHHHHhc
Q 038401 488 MLESLFERL-DSDSNINKKELHHVVAGIYERA-NRLNDASRIMNRMNKR 534 (542)
Q Consensus 488 ~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 534 (542)
+|++.+++. ..+|+ +......+..++... +++++|.++|.++.+.
T Consensus 153 ~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGHED--DGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTTSC--HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccccc--hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999988884 33443 445566666677666 7799999999987653
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.73 E-value=2.7e-07 Score=70.29 Aligned_cols=93 Identities=12% Similarity=0.057 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHH-HHH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHF-QML 477 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~ 477 (542)
...|..++..+...|++++|+..|++.++. .| +...|..++.+|.+.|++++|+..++++++.+ |.+...+ .++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 345666667777777777777777777763 24 45667777777777777777777777777765 1222223 377
Q ss_pred HHHhccCChHHHHHHHHHH
Q 038401 478 SLYGARKDFNMLESLFERL 496 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~ 496 (542)
.++...|++++|+..+++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHH
Confidence 7777777777777777773
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.72 E-value=9.1e-08 Score=80.13 Aligned_cols=98 Identities=11% Similarity=-0.024 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--CCch
Q 038401 399 DISVFGCMIELFSRNKKYANVIEVFEKMRSA----GYFP--DSHIIALVLNSYGKLREFETADDLYSEMQEEGC--VFSD 470 (542)
Q Consensus 399 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~ 470 (542)
...++..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...++++.+... ..+.
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence 3556777888888899999999988887653 1112 124567778888889999999999988875321 1121
Q ss_pred H--HHHH-HHHHHhccCChHHHHHHHHHH
Q 038401 471 Q--VHFQ-MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 471 ~--~~~~-l~~~~~~~g~~~~A~~~~~~~ 496 (542)
. ..+. ++.++...|++++|...+++.
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 1 1223 788888999999999888874
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=2.8e-07 Score=74.05 Aligned_cols=99 Identities=11% Similarity=0.101 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHH-HHH
Q 038401 399 DISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVH-FQM 476 (542)
Q Consensus 399 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 476 (542)
+...+..++..+...|++++|+..|++.++. .| +...|..+..+|...|++++|+..|+++++.+ +.+... +.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 4555666666677777777777777777663 24 45666666677777777777777777777665 122222 226
Q ss_pred HHHHhccCChHHHHHHHHH-HhcCCC
Q 038401 477 LSLYGARKDFNMLESLFER-LDSDSN 501 (542)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~-~~~~~~ 501 (542)
+.++...|++++|+..+++ +...|+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6777777777777777776 333443
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.70 E-value=2e-07 Score=71.09 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHH
Q 038401 435 SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVA 512 (542)
Q Consensus 435 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~ 512 (542)
...+...+..+.+.|++++|+..|+++++.. |.+...+. ++.++...|++++|+..+++ +..+|. ....|..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHH
Confidence 4567788889999999999999999999987 23344444 99999999999999999999 455555 567899999
Q ss_pred HHHHhhcchhhHHHHHHHHHhcC
Q 038401 513 GIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
.+|...|++++|+..++++.+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999988765
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.70 E-value=1.3e-07 Score=73.83 Aligned_cols=95 Identities=14% Similarity=-0.011 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 038401 399 DISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQML 477 (542)
Q Consensus 399 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 477 (542)
+...+..++..+...|++++|+..|++++.. .| +...|..+..+|...|++++|+..|+++++.++.. ...++.++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-PRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-cHHHHHHH
Confidence 4556666777888888999999998888874 35 56778888888888899999999999888876221 22333388
Q ss_pred HHHhccCChHHHHHHHHHH
Q 038401 478 SLYGARKDFNMLESLFERL 496 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~ 496 (542)
.++...|++++|+..+++.
T Consensus 94 ~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 8888899999998888884
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=1.4e-07 Score=73.72 Aligned_cols=102 Identities=9% Similarity=-0.019 Sum_probs=83.7
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhH
Q 038401 431 YFPD-SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKEL 507 (542)
Q Consensus 431 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~ 507 (542)
..|+ ...+..+...+.+.|++++|...|++++..+ |.+...+. ++.++...|++++|+..+++ +..+|+ +...
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~ 88 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EPRF 88 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcHH
Confidence 3453 3566778889999999999999999999987 23333444 89999999999999999999 455555 4578
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 508 HHVVAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 508 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
+..++.+|...|++++|+..|+++.+...
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999877553
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=1.7e-07 Score=82.94 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=24.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhcc-CcHHHHHHHHHHHHH
Q 038401 413 NKKYANVIEVFEKMRSAGYFPDSHI-IALVLNSYGKL-REFETADDLYSEMQE 463 (542)
Q Consensus 413 ~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~-g~~~~A~~~~~~~~~ 463 (542)
.|++++|++.+++..+ ..|+... ...+...+.+. +.+++|.++|.++.+
T Consensus 148 ~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4666666666666555 2344322 22222223333 455666666665554
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=8.2e-07 Score=67.91 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=86.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 038401 370 TAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLR 449 (542)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 449 (542)
.+...+...|++++|...++++++.. +.+...+..++.++...|++++|+..+++..+.. +.+...+..++..+...|
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhC
Confidence 34556677788888888888887763 3567888889999999999999999999998743 224678888888999999
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCCh
Q 038401 450 EFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDF 486 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~ 486 (542)
++++|...++++.+..+ .+...+. ++.++...|++
T Consensus 95 ~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 95 KHVEAVAYYKKALELDP--DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp CHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHhcC
Confidence 99999999999998762 2233333 77777776654
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.64 E-value=2.9e-07 Score=73.94 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHH
Q 038401 434 DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVV 511 (542)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l 511 (542)
+...+..+...+...|++++|+..|+++++.. +.+...+. ++.+|...|++++|+..+++ +..+|. ....|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--YSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence 45678888999999999999999999999987 22334444 99999999999999999999 455555 56889999
Q ss_pred HHHHHhhcchhhHHHHHHHHHhcCCC
Q 038401 512 AGIYERANRLNDASRIMNRMNKRRTF 537 (542)
Q Consensus 512 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 537 (542)
+.+|...|++++|+..|+++.+....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998876543
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=3.6e-07 Score=69.59 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=78.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHHHHH
Q 038401 369 ETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAG--YFPD----SHIIALVL 442 (542)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~~l~ 442 (542)
..+...+.+.|++++|++.|+++++.. +.+...|..++.+|...|++++|++.+++.++.+ ..++ ..+|..++
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 345677888899999999999998874 4578889999999999999999999999998632 1112 24677788
Q ss_pred HHHhccCcHHHHHHHHHHHHHcC
Q 038401 443 NSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.++...|++++|++.|++.++..
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC
Confidence 89999999999999999998865
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.63 E-value=1.1e-06 Score=65.86 Aligned_cols=110 Identities=6% Similarity=0.009 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLS 478 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~ 478 (542)
...+..++..+...|++++|+..|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+. ++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 4456667777777788888888887777632 1255667777777777788888888888777765 12222333 777
Q ss_pred HHhccCChHHHHHHHHHHh-cCCCCCchhHHHHHHHH
Q 038401 479 LYGARKDFNMLESLFERLD-SDSNINKKELHHVVAGI 514 (542)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~ 514 (542)
++...|++++|.+.+++.. ..|. ....+..++.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN--NPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHh
Confidence 7777888888888777743 3332 33444444443
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=2.8e-07 Score=68.36 Aligned_cols=99 Identities=7% Similarity=-0.063 Sum_probs=48.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHh-cCCCCCchhHHHHHHHHH
Q 038401 437 IIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLD-SDSNINKKELHHVVAGIY 515 (542)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~ 515 (542)
.+..++..+...|++++|...++++.+..+. .....+.++.++...|++++|...+++.. ..|.......+..++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3444455555555555555555555554311 11112225555555555555555555532 222211234555556666
Q ss_pred Hhh-cchhhHHHHHHHHHhcCC
Q 038401 516 ERA-NRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 516 ~~~-g~~~~A~~~~~~~~~~~~ 536 (542)
... |++++|.+.+++....+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHhCCHHHHHHHHHHHhhccc
Confidence 666 666666666666555543
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.63 E-value=1.1e-06 Score=67.39 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=86.2
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 038401 16 SPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNL 95 (542)
Q Consensus 16 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 95 (542)
+.++..|..+...+.+.|++++|...|+...+... .+...+..+..++...|++++|++.+++..+... .+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 44566788888888888888888888888887643 2677788888888888888888888888877642 356777777
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhcc
Q 038401 96 IELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKA 137 (542)
Q Consensus 96 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (542)
..++...|++++|...|++..+.. +.+...+..+..++...
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 888888888888888888877652 22344555555554433
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=1.5e-06 Score=65.77 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 038401 19 VFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIEL 98 (542)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (542)
...|..+...+.+.|++++|...|+.+.+... .+..++..+...+...|++++|+.+++++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 45666677777777777777777777766532 255667777777777777777777777776653 2355566666677
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHH
Q 038401 99 ARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMIN 132 (542)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 132 (542)
+...|++++|...++++.+.. +.+...+..+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 119 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 119 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 777777777777777666542 223344444333
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=6e-07 Score=69.50 Aligned_cols=116 Identities=9% Similarity=-0.010 Sum_probs=86.8
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHH-HH
Q 038401 397 VKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQV-HF 474 (542)
Q Consensus 397 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~ 474 (542)
+.+...+..++..+...|++++|+..|+++++.. | +...+..++.++...|++++|...++++++.+ |.+.. .+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHH
Confidence 3567888889999999999999999999998843 4 56788888999999999999999999999876 22233 33
Q ss_pred HHHHHHhccCChHHHHHHHHHH-hcCCC---CCchhHHHHHHHHHH
Q 038401 475 QMLSLYGARKDFNMLESLFERL-DSDSN---INKKELHHVVAGIYE 516 (542)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~~~~l~~~~~ 516 (542)
.++.++...|++++|+..+++. ...|+ .....+...+..+..
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999884 32222 113445555554443
No 160
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.62 E-value=5.6e-07 Score=81.81 Aligned_cols=131 Identities=11% Similarity=-0.018 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCC--------------HHhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 038401 18 SVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPD--------------RYTYSTLITCFGKEGMFDSAISWLQQMEQD 83 (542)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 83 (542)
+...+..+...+.+.|++++|+..|+...+...... ..+|..+..++.+.|++++|+..+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777777777777777777776543211 355666666666666666666666666655
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHH-HHHHHHH
Q 038401 84 RVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEA-RLLIEEM 150 (542)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 150 (542)
.+ .+...+..+..++...|++++|...|++..+.. +.+...+..+..++...|+.+++ ..+++.|
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 245566666666666666666666666665542 23445555555555556665555 2344444
No 161
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=1.2e-06 Score=75.52 Aligned_cols=91 Identities=9% Similarity=-0.135 Sum_probs=55.5
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccC
Q 038401 374 ILARAGRIEEATWVFRQAFDAGEVK--DISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD--SHIIALVLNSYGKLR 449 (542)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 449 (542)
.+.+.+++++|+..|+...... .| ....+..+..++...|++++|+..|++.......|. .........++.+.|
T Consensus 144 l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC
Confidence 3445556666666665443321 11 123556667777777777777777777765332243 235555666777777
Q ss_pred cHHHHHHHHHHHHHcC
Q 038401 450 EFETADDLYSEMQEEG 465 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~ 465 (542)
+.++|...|+++...+
T Consensus 223 r~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 223 NESAAVALLEWLQTTH 238 (282)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhcC
Confidence 7777777777777765
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.2e-06 Score=68.80 Aligned_cols=111 Identities=9% Similarity=0.062 Sum_probs=76.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHH-
Q 038401 398 KDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD----SHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQV- 472 (542)
Q Consensus 398 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~- 472 (542)
.+...+..++..+...|++++|+..|++..+ ..|+ ...+..+..+|...|++++|+..++++.+.. +.+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHH
Confidence 3566777777888888888888888888877 3465 4667777778888888888888888887765 22222
Q ss_pred HHHHHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHH
Q 038401 473 HFQMLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGI 514 (542)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~ 514 (542)
++.++.++...|++++|...+++. ...|. ....+..+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK--NKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHH
Confidence 333777888888888888888884 43443 33444444443
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.58 E-value=7.4e-07 Score=67.12 Aligned_cols=93 Identities=13% Similarity=0.024 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcc
Q 038401 370 TAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKL 448 (542)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 448 (542)
.....+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|+++++. .| +...+..++.++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 33444555566666666666665542 234555555666666666666666666666552 24 344555555566666
Q ss_pred CcHHHHHHHHHHHHHcC
Q 038401 449 REFETADDLYSEMQEEG 465 (542)
Q Consensus 449 g~~~~A~~~~~~~~~~~ 465 (542)
|++++|+..++++++..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 66666666666655543
No 164
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.58 E-value=4.9e-07 Score=72.33 Aligned_cols=135 Identities=13% Similarity=0.068 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---CCch-
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGY-FPD----SHIIALVLNSYGKLREFETADDLYSEMQEEGC---VFSD- 470 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~- 470 (542)
..++..+...+...|++++|+..+++.++... .++ ..++..+...+...|++++|...++++.+... .++.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45677788888899999999999988875310 012 14677788899999999999999999876421 1111
Q ss_pred HHHHH-HHHHHhccCChHHHHHHHHHHhc----CCCC-CchhHHHHHHHHHHhhcchhhHHHHHHHHHhc
Q 038401 471 QVHFQ-MLSLYGARKDFNMLESLFERLDS----DSNI-NKKELHHVVAGIYERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 471 ~~~~~-l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 534 (542)
...+. ++.++...|++++|...+++... .++. .....+..++.+|...|++++|.+++++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22333 88899999999999999988421 1111 11366888999999999999999999997653
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.57 E-value=5e-07 Score=85.97 Aligned_cols=127 Identities=15% Similarity=0.169 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD----------------SHIIALVLNSYGKLREFETADDLYSEMQE 463 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 463 (542)
...|..++..+.+.|++++|+..|+++++. .|+ ...|..+..+|.+.|++++|+..++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 445666666777777777777777777663 232 36666777777777777777777777777
Q ss_pred cCCCCchHHHHHHHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhhcchhhHHH-HHHHH
Q 038401 464 EGCVFSDQVHFQMLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIYERANRLNDASR-IMNRM 531 (542)
Q Consensus 464 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 531 (542)
..+ .....++.++.+|...|++++|+..|++. ..+|. +..++..++.++...|++++|.+ .+++|
T Consensus 346 ~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 651 11222333777777777777777777774 33443 34577777777777777776653 34444
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=9.6e-07 Score=68.35 Aligned_cols=95 Identities=5% Similarity=-0.053 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHh
Q 038401 368 RETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYG 446 (542)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 446 (542)
+..+...+...|++++|...|+++++.. +.+...|..++.++...|++++|+..++++++.+ | +...+..++.+|.
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHH
Confidence 3445556666777777777777776653 3456666667777777777777777777776632 3 4556666667777
Q ss_pred ccCcHHHHHHHHHHHHHcC
Q 038401 447 KLREFETADDLYSEMQEEG 465 (542)
Q Consensus 447 ~~g~~~~A~~~~~~~~~~~ 465 (542)
..|++++|...|+++.+..
T Consensus 89 ~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHC
Confidence 7777777777777766653
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=0.00012 Score=64.92 Aligned_cols=191 Identities=9% Similarity=-0.028 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhcCCCCCCHH---HHHHHHHHhCC-HHHHHHHH
Q 038401 315 LDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVG--LVAHAKRLLHELRQPNTIPRE---TAITILARAGR-IEEATWVF 388 (542)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~g~-~~~A~~~~ 388 (542)
+++++.+++.+...+ +.+..+|+.-..++.+.+ .+++++.++..+...++..+. .-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666666666653 346666666555555655 366777777666654444433 33444555666 57888888
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcc-----
Q 038401 389 RQAFDAGEVKDISVFGCMIELFSRN--------------KKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKL----- 448 (542)
Q Consensus 389 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----- 448 (542)
+++++.. +.|...|+.....+... +.++++++.+++.+.. .| |...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 8888774 46777787777666654 4578888888888873 35 566676555555444
Q ss_pred ------CcHHHHHHHHHHHHHcCCCCchHHHHHHH-----HHHhccCChHHHHHHHHHHh-cCCCCCchhHHHHHHHH
Q 038401 449 ------REFETADDLYSEMQEEGCVFSDQVHFQML-----SLYGARKDFNMLESLFERLD-SDSNINKKELHHVVAGI 514 (542)
Q Consensus 449 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~ 514 (542)
+.++++++.++++.+.. |+..+..+. ......|..++...++.++. .+|- ..+.|.-+...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~---pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~--r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE---PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM--RAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG--GHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhC---cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc--hhhHHHHHHHH
Confidence 56789999999999876 554433321 12234677888888888854 4443 34555554443
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.56 E-value=1.4e-06 Score=64.42 Aligned_cols=95 Identities=15% Similarity=-0.012 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHH
Q 038401 401 SVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSL 479 (542)
Q Consensus 401 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~ 479 (542)
..+..++..+...|++++|+..|+++.+.. +.+...+..++.++...|++++|...++++.+..+...+...+. ++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344445555555555555555555555422 11344455555555555555555555555555431100122222 5555
Q ss_pred Hhcc-CChHHHHHHHHHH
Q 038401 480 YGAR-KDFNMLESLFERL 496 (542)
Q Consensus 480 ~~~~-g~~~~A~~~~~~~ 496 (542)
+... |++++|.+.++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HTTCSSCSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 5555 5566665555553
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.55 E-value=1.4e-06 Score=66.61 Aligned_cols=97 Identities=10% Similarity=0.061 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCc--hHHHHHH
Q 038401 403 FGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS----HIIALVLNSYGKLREFETADDLYSEMQEEGCVFS--DQVHFQM 476 (542)
Q Consensus 403 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 476 (542)
+..++..+...|++++|+..|+++.+.. |+. ..+..++.++...|++++|...|+++.+..+..+ ....+.+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3456677888899999999999888743 432 4677788888889999999999999888763222 2223338
Q ss_pred HHHHhccCChHHHHHHHHHH-hcCCC
Q 038401 477 LSLYGARKDFNMLESLFERL-DSDSN 501 (542)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~-~~~~~ 501 (542)
+.++...|++++|+..++++ ...|+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 88888899999999998885 44443
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=6.8e-06 Score=77.95 Aligned_cols=191 Identities=11% Similarity=0.096 Sum_probs=92.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHhcCC--CCC-
Q 038401 306 IAIWGKAGKLDRAAMLFQKLRSSGVEID----------------PVLYQTMIVAYERVGLVAHAKRLLHELRQP--NTI- 366 (542)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~- 366 (542)
...+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+..+... ...
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456678888888888888877532211 123455666666677777776666655421 000
Q ss_pred C------HHHHHHHHHHhCCHHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--
Q 038401 367 P------RETAITILARAGRIEEATWVFRQAFDA----GEVK-DISVFGCMIELFSRNKKYANVIEVFEKMRSA--GY-- 431 (542)
Q Consensus 367 ~------~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-- 431 (542)
. ...+...+...|+++.|..+++..... +..+ ...++..++..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 0 000111112235555555555555431 1111 1334455555555556666666555555431 11
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC---CCCchH--HHHH-HHHHHhccCChHHHHHHHHHH
Q 038401 432 FPD-SHIIALVLNSYGKLREFETADDLYSEMQEEG---CVFSDQ--VHFQ-MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 432 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~--~~~~-l~~~~~~~g~~~~A~~~~~~~ 496 (542)
.|. ..++..++..|...|++++|..+++++.... ..++.. ..+. ++..+...|++++|...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 111 2345555555555566666655555554321 011111 1111 444455555555555555543
No 171
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=9e-06 Score=60.59 Aligned_cols=99 Identities=13% Similarity=0.020 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038401 18 SVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIE 97 (542)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 97 (542)
.+..+..+...+...|++++|...|+....... .+...+..+...+...|++++|...+++..+..+ .+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 345666777777778888888888877776542 2566777777777777888888877777776532 25666777777
Q ss_pred HHHhcCCHHHHHHHHHHhHhC
Q 038401 98 LARKLSDYSKAISIFSRLKSS 118 (542)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~ 118 (542)
++...|++++|...+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 777777777777777777665
No 172
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.47 E-value=1.5e-06 Score=67.38 Aligned_cols=60 Identities=10% Similarity=-0.030 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------H-----HHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038401 402 VFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD--------S-----HIIALVLNSYGKLREFETADDLYSEMQE 463 (542)
Q Consensus 402 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 463 (542)
.+...+..+.+.|++++|+..|++.++ +.|+ . ..|.....++.+.|++++|+..++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555556666666666666655 2233 1 1444444444444444444444444444
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.47 E-value=4.5e-07 Score=82.43 Aligned_cols=129 Identities=9% Similarity=0.088 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------------------HHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038401 403 FGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS------------------HIIALVLNSYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 403 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 464 (542)
+..+...+.+.|++++|+..|+++++ ..|+. ..|..+..+|.+.|++++|+..++++++.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444445555555555555555554 22332 26778888999999999999999999987
Q ss_pred CCCCchHHHHHHHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHHH-HhhcchhhHHHHHHHHHhcCC
Q 038401 465 GCVFSDQVHFQMLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGIY-ERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 465 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~ 536 (542)
.+ .....++.++.+|...|++++|+..|++. ..+|+ +..++..+..+. ...+..+++...|++|.....
T Consensus 260 ~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 260 EE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD--DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 61 12233444899999999999999999995 44444 446677777773 455678888899998876654
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=3.8e-06 Score=65.87 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCch-HHHHH-HHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHH
Q 038401 434 DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSD-QVHFQ-MLSLYGARKDFNMLESLFERL-DSDSNINKKELHHV 510 (542)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~ 510 (542)
+...+..++..+...|++++|...|+++.+..+..+. ...+. ++.++...|++++|+..+++. ...|. ....+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CHHHHHH
Confidence 5678888999999999999999999999987621110 33334 889999999999999999994 44444 4678899
Q ss_pred HHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 511 VAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 511 l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
++.+|...|++++|...+++..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999987654
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.46 E-value=4.4e-07 Score=68.04 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=52.6
Q ss_pred hCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 038401 378 AGRIEEATWVFRQAFDAG--EVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETA 454 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 454 (542)
.|++++|+..|+++++.+ .+.+...+..++.+|...|++++|+..|+++++. .| +...+..++.++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 456666667777666643 1234556666666777777777777777777663 24 345666666667777777777
Q ss_pred HHHHHHHHHcC
Q 038401 455 DDLYSEMQEEG 465 (542)
Q Consensus 455 ~~~~~~~~~~~ 465 (542)
...++++++..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 77777766654
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=4.4e-06 Score=63.70 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 038401 368 RETAITILARAGRIEEATWVFRQAFDAGEVKDI---SVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPD----SHIIAL 440 (542)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 440 (542)
+......+...|++++|...|+++++..+ .+. ..+..++.++...|++++|+..|+++.+.. |+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 44556677888888888888888887643 233 567778888888888888888888888743 43 566777
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 441 VLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
++.++...|++++|...|+++++..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888888888876
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.45 E-value=2.5e-07 Score=69.44 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=64.2
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHH
Q 038401 412 RNKKYANVIEVFEKMRSAGY-FP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNM 488 (542)
Q Consensus 412 ~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~ 488 (542)
..|++++|+..|+++++.+. .| +...+..++.+|...|++++|+..++++++..+ .+...+. ++.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHHH
Confidence 46889999999999998431 23 346788888999999999999999999998872 2233333 8899999999999
Q ss_pred HHHHHHH-HhcCCC
Q 038401 489 LESLFER-LDSDSN 501 (542)
Q Consensus 489 A~~~~~~-~~~~~~ 501 (542)
|+..+++ +...|+
T Consensus 80 A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 80 GVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCC
Confidence 9999998 444444
No 178
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=3e-06 Score=70.48 Aligned_cols=121 Identities=13% Similarity=0.034 Sum_probs=79.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEVKD---------------ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DS 435 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 435 (542)
...+...|++++|+..|+++++...... ...+..+..+|...|++++|+..++++++. .| +.
T Consensus 45 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~ 122 (198)
T 2fbn_A 45 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNV 122 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccH
Confidence 3444555556666666666555321111 367888888899999999999999999884 34 56
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHH-HHHHHH
Q 038401 436 HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLE-SLFERL 496 (542)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~-~~~~~~ 496 (542)
..+..++.+|...|++++|...|+++++.. |.+..... +..++...|+.+++. ..+.++
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888899999999999999999998876 22233333 777777777666665 444443
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.45 E-value=6.8e-07 Score=85.39 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=59.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCCh
Q 038401 409 LFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDF 486 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~ 486 (542)
.+...|++++|++.|+++++. .| +...+..++.+|.+.|++++|+..++++++.. +.+...+. ++.+|...|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 344556666666666666552 23 34555566666666666666666666666654 11222222 56666666666
Q ss_pred HHHHHHHHH-HhcCCCCCchhHHHHHHHH--HHhhcchhhHHHHHH
Q 038401 487 NMLESLFER-LDSDSNINKKELHHVVAGI--YERANRLNDASRIMN 529 (542)
Q Consensus 487 ~~A~~~~~~-~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 529 (542)
++|.+.+++ +...|+ ....+..++.+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666 333333 22344444444 566666666666665
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.44 E-value=2e-06 Score=82.11 Aligned_cols=117 Identities=15% Similarity=0.008 Sum_probs=91.4
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHH
Q 038401 374 ILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFE 452 (542)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 452 (542)
.+.+.|++++|++.++++++.. +.+...|..++.+|.+.|++++|++.++++++. .| +...+..++.+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 3556799999999999999873 356889999999999999999999999999984 45 5678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHH--HhccCChHHHHHHHH
Q 038401 453 TADDLYSEMQEEGCVFSDQVHFQMLSL--YGARKDFNMLESLFE 494 (542)
Q Consensus 453 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 494 (542)
+|.+.|+++++..+..+. ....++.+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKD-AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTT-HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999997632222 22225555 888899999999998
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=3.4e-06 Score=64.40 Aligned_cols=114 Identities=8% Similarity=0.083 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC-ch----HHHH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVF-SD----QVHF 474 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~----~~~~ 474 (542)
...+..++..+...|++++|+..|+++.+.. +.+...+..++..+...|++++|...++++.+..+.. ++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456667777777778888888777777642 2255667777777777788888888887777654110 10 2222
Q ss_pred H-HHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038401 475 Q-MLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYE 516 (542)
Q Consensus 475 ~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 516 (542)
. ++.++...|++++|.+.+++...... +......+..++.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 3 77777788888888888877433222 2344444444443
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.43 E-value=1.9e-06 Score=69.01 Aligned_cols=118 Identities=12% Similarity=0.098 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC--------CCC-HHHHHHHHHHHhccCcHHHHHHHHHHH
Q 038401 399 DISVFGCMIELFSRNKKYANVIEVFEKMRSA--------GY--------FPD-SHIIALVLNSYGKLREFETADDLYSEM 461 (542)
Q Consensus 399 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~--------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 461 (542)
....+...+..+.+.|++++|+..|++.++. .. .|. ...|..+..+|.+.|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4667888899999999999999999999873 00 222 367888889999999999999999999
Q ss_pred HHcCCCCchH-HHHHHHHHHhccCChHHHHHHHHH-HhcCCCCCch-hHHHHHHHHHHhhcc
Q 038401 462 QEEGCVFSDQ-VHFQMLSLYGARKDFNMLESLFER-LDSDSNINKK-ELHHVVAGIYERANR 520 (542)
Q Consensus 462 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~-~~~~~l~~~~~~~g~ 520 (542)
++.+ |.+. .++.++.++...|++++|+..+++ +..+|+ +. .+...+..+....+.
T Consensus 90 l~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 90 LKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA--AASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHH
T ss_pred HhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHH
Confidence 9986 2233 334499999999999999999999 455554 33 445555555544443
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.42 E-value=1.8e-06 Score=65.99 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=76.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHHH
Q 038401 369 ETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGY--FPD----SHIIALVL 442 (542)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l~ 442 (542)
..+...+...|++++|...|+++++.. +.+...+..++.++...|++++|+..++++.+... .++ ..++..++
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 345566777888888888888888764 45678888889999999999999999998876421 122 66788888
Q ss_pred HHHhccCcHHHHHHHHHHHHHcC
Q 038401 443 NSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.++...|++++|...|+++.+..
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC
Confidence 89999999999999999998876
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.42 E-value=3e-06 Score=67.77 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc--------C---------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038401 368 RETAITILARAGRIEEATWVFRQAFDA--------G---------EVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAG 430 (542)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 430 (542)
+......+.+.|++++|+..|+++++. . .+.+...|..+..+|.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~- 92 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR- 92 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Confidence 344577788999999999999999875 1 1123467888999999999999999999999984
Q ss_pred CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 431 YFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 431 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.| +...|..++.+|...|++++|...|+++++..
T Consensus 93 -~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 93 -EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 45 56888899999999999999999999999987
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.37 E-value=4.2e-06 Score=76.87 Aligned_cols=122 Identities=11% Similarity=0.129 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038401 402 VFGCMIELFSRNKKYANVIEVFEKMRSA--------------GYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGC 466 (542)
Q Consensus 402 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 466 (542)
.+..+...+.+.|++++|+..|+++++. ...| +...|..+..+|.+.|++++|+..++++++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3555666677777777777777776651 0123 34677888888889999999999999998876
Q ss_pred CCchH-HHHHHHHHHhccCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcchhhHHHH
Q 038401 467 VFSDQ-VHFQMLSLYGARKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRLNDASRI 527 (542)
Q Consensus 467 ~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 527 (542)
+.+. .++.++.+|...|++++|+..+++ +...|. +..++..+..++...++.+++.+.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~--~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE--DKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 333488889999999999999988 455554 457788888888888888777653
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=2.5e-06 Score=68.10 Aligned_cols=125 Identities=13% Similarity=0.046 Sum_probs=84.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHH
Q 038401 372 ITILARAGRIEEATWVFRQAFDAGEV-KD----ISVFGCMIELFSRNKKYANVIEVFEKMRSAGY-FPD----SHIIALV 441 (542)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l 441 (542)
...+...|++++|...++++++.... ++ ..++..+...+...|++++|...+++..+... .++ ...+..+
T Consensus 16 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 95 (164)
T 3ro3_A 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 95 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 44455556666666666665542111 11 24677788889999999999999998875310 012 3567778
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcC---CCCch-HHHHH-HHHHHhccCChHHHHHHHHHH
Q 038401 442 LNSYGKLREFETADDLYSEMQEEG---CVFSD-QVHFQ-MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~~~~~-l~~~~~~~g~~~~A~~~~~~~ 496 (542)
...+...|++++|...++++.+.. ..++. ...+. ++.++...|++++|.+.+++.
T Consensus 96 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888899999999999999887642 11111 12233 788899999999999999884
No 187
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.35 E-value=1.4e-05 Score=61.56 Aligned_cols=111 Identities=9% Similarity=-0.012 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhc----cCChHHH
Q 038401 414 KKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGA----RKDFNML 489 (542)
Q Consensus 414 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 489 (542)
+++++|+..|++..+.| .|+.. +...|...+.+++|.++|+++.+.+ .....+.++.+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566666666666654 23322 5555555566666666666666654 33334445555655 5666666
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHh----hcchhhHHHHHHHHHhcC
Q 038401 490 ESLFERLDSDSNINKKELHHVVAGIYER----ANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 535 (542)
..++++..... ...++..|+.+|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666644332 23456666666666 566666666666666655
No 188
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.35 E-value=0.00089 Score=59.46 Aligned_cols=128 Identities=8% Similarity=0.070 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCC----------HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--C
Q 038401 37 LAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGM----------FDSAISWLQQMEQDRVSGDLVLYSNLIELARKLS--D 104 (542)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 104 (542)
+|+.+++.++..++. +..+|+.--..+...+. +++++.+++.+....++ +..+|+.-..++...+ +
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCccc
Confidence 566666666665432 34445543333332222 34555555555554322 4455555444454554 2
Q ss_pred HHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCc-HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038401 105 YSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKL-FKEARLLIEEMREQGVKPDTVSYSTLLNL 168 (542)
Q Consensus 105 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 168 (542)
+++++.+++.+.+.. +.+..+|+.-...+...|. ++++++.++.+++..+ -|...|+.....
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~l 188 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 555555555555543 3344444444444444444 3555555555555432 244444444333
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.34 E-value=4.3e-06 Score=79.24 Aligned_cols=127 Identities=7% Similarity=0.020 Sum_probs=82.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCC---C-HHHHHHHHHHHhccCcHHHHHHHHHHHHHc-----CCCCchHHH-HH
Q 038401 409 LFSRNKKYANVIEVFEKMRSA---GYFP---D-SHIIALVLNSYGKLREFETADDLYSEMQEE-----GCVFSDQVH-FQ 475 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~~---~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~-~~ 475 (542)
.+..+|++++|+.++++.++. -+.| + ..+++.++.+|...|++++|..+++++++. |...|+... +.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345677788887777777642 1112 2 256777777888888888888888776653 333343332 22
Q ss_pred -HHHHHhccCChHHHHHHHHHHh----c-CCCCCc--hhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 476 -MLSLYGARKDFNMLESLFERLD----S-DSNINK--KELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 476 -l~~~~~~~g~~~~A~~~~~~~~----~-~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
++.+|...|++++|..++++.. . -+...| ......+..++...|++++|..+|+++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888777731 1 122122 3556677788888888888888888887643
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.34 E-value=6.5e-06 Score=63.77 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=73.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCc------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEVK------D-----ISVFGCMIELFSRNKKYANVIEVFEKMRSA-----GYFPD 434 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~ 434 (542)
....+.+.|++++|+..|+++++..+.. + ...|..+..++...|++++|+..+++.++. .+.|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 3455667788888888888887753321 2 338999999999999999999999999983 11676
Q ss_pred H-HHH----HHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 435 S-HII----ALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 435 ~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
. ..| ...+.++...|++++|+..|+++++..
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4 567 788888899999999999999988764
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.6e-05 Score=73.86 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCCCchHHH
Q 038401 403 FGCMIELFSRNKKYANVIEVFEKMRSA-GYFPDS----HIIALVLNSYGKLREFETADDLYSEMQEE----GCVFSDQVH 473 (542)
Q Consensus 403 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 473 (542)
+..++..|...|++++|.+.+.++... +..++. .+.+.+...+...|++++|..+++..... +........
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 444555555566666666555555431 001111 12222333334455556665555554432 111111112
Q ss_pred HH-HHHHHhccCChHHHHHHHHHHhc---C--CCCCchhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 474 FQ-MLSLYGARKDFNMLESLFERLDS---D--SNINKKELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 474 ~~-l~~~~~~~g~~~~A~~~~~~~~~---~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
.. ++.++...|++++|...++++.. . ........+..++.+|...|++++|..++++..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 22 55556666666666655555311 0 111112455555666666666666666655543
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.28 E-value=7.9e-06 Score=77.69 Aligned_cols=93 Identities=12% Similarity=0.149 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HH
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-ML 477 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~ 477 (542)
...|..+..+|.+.|++++|+..++++++. .| +...|..+..+|...|++++|+..|+++++.. |.+...+. +.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~ 392 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 567888888899999999999999999884 34 56788888889999999999999999998876 22222333 77
Q ss_pred HHHhccCChHHHHH-HHHHH
Q 038401 478 SLYGARKDFNMLES-LFERL 496 (542)
Q Consensus 478 ~~~~~~g~~~~A~~-~~~~~ 496 (542)
.++.+.|++++|.+ .++++
T Consensus 393 ~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 393 MCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888887763 44443
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.27 E-value=8.6e-07 Score=65.60 Aligned_cols=96 Identities=8% Similarity=-0.026 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHH-hcCCCCCc----hhH
Q 038401 434 DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERL-DSDSNINK----KEL 507 (542)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~----~~~ 507 (542)
+...+..++..+...|++++|+..|+++++.. |.+...+. ++.++...|++++|++.+++. ...|...+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 34556666667777777777777777777665 12222233 667777777777777777773 33333211 345
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHH
Q 038401 508 HHVVAGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 508 ~~~l~~~~~~~g~~~~A~~~~~~~ 531 (542)
+..++.++...|++++|+..++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 666777777777777766655543
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.27 E-value=8.1e-06 Score=75.01 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=72.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-
Q 038401 398 KDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ- 475 (542)
Q Consensus 398 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~- 475 (542)
.+...|..+..+|.+.|++++|+..++++++. .| +...+..+..+|...|++++|+..|+++.+.. |.+.....
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~ 346 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 35678889999999999999999999999984 45 56888889999999999999999999999986 22333333
Q ss_pred HHHHHhccCChHHHHH
Q 038401 476 MLSLYGARKDFNMLES 491 (542)
Q Consensus 476 l~~~~~~~g~~~~A~~ 491 (542)
+..++...++.+++.+
T Consensus 347 l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777654
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=2.4e-05 Score=76.13 Aligned_cols=137 Identities=12% Similarity=0.056 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-cHHHHHHH
Q 038401 381 IEEATWVFRQAFDAGEVKDISVFGCMIELFSRNK--KYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLR-EFETADDL 457 (542)
Q Consensus 381 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~ 457 (542)
++++++.++++++.. +.+..+|..-..++.+.| +++++++.++++.+.+. -+...|..-...+.+.| .+++++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHH
Confidence 788888899988874 468888998888888889 67999999999998542 26788888888888888 89999999
Q ss_pred HHHHHHcCCCCchHHHHH-HHHHHhcc--------------CChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhhcch
Q 038401 458 YSEMQEEGCVFSDQVHFQ-MLSLYGAR--------------KDFNMLESLFER-LDSDSNINKKELHHVVAGIYERANRL 521 (542)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~-l~~~~~~~--------------g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~ 521 (542)
++++++.+ +.+...+. .+.++... +.+++|++.+++ +..+|+ +..+|+.+..++...|++
T Consensus 167 ~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~--~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 167 TDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN--DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS--CSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHC--CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC--CccHHHHHHHHHhcCCCc
Confidence 99999877 33344333 44444432 567899999988 566766 557899999999888876
Q ss_pred hh
Q 038401 522 ND 523 (542)
Q Consensus 522 ~~ 523 (542)
++
T Consensus 243 ~~ 244 (567)
T 1dce_A 243 DV 244 (567)
T ss_dssp SC
T ss_pred cc
Confidence 55
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=0.00013 Score=70.90 Aligned_cols=151 Identities=9% Similarity=0.009 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Q 038401 379 GRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKK----------YANVIEVFEKMRSAGYFP-DSHIIALVLNSYGK 447 (542)
Q Consensus 379 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 447 (542)
...++|++.++++++.. +.+..+|+.-..++...|+ ++++++.++++.+. .| +..+|..-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 34467899999999874 3567889888888888777 99999999999984 35 67889988888999
Q ss_pred cC--cHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccC-ChHHHHHHHHHH-hcCCCCCchhHHHHHHHHHHhh----
Q 038401 448 LR--EFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARK-DFNMLESLFERL-DSDSNINKKELHHVVAGIYERA---- 518 (542)
Q Consensus 448 ~g--~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g-~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~---- 518 (542)
.| ++++++..++++.+.+ +.+...|. ...++.+.| .++++.+.++++ ..+|. +..+|...+.++...
T Consensus 120 l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~--n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC--CHHHHHHHHHHHHHHSCCC
T ss_pred cccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--CccHHHHHHHHHHhhcccc
Confidence 99 7799999999999987 23344444 778888888 899999999994 44444 678999999998874
Q ss_pred ----------cchhhHHHHHHHHHhcCC
Q 038401 519 ----------NRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 519 ----------g~~~~A~~~~~~~~~~~~ 536 (542)
+.+++|+++++++....+
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCC
Confidence 678999999999887653
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.10 E-value=2.2e-05 Score=74.39 Aligned_cols=123 Identities=9% Similarity=0.067 Sum_probs=93.1
Q ss_pred HHHhCCHHHHHHHHHHHHHcC-------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHH
Q 038401 375 LARAGRIEEATWVFRQAFDAG-------EVKDISVFGCMIELFSRNKKYANVIEVFEKMRSA-----G-YFPDS-HIIAL 440 (542)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~ 440 (542)
+...|++++|+.+++++++.. .+....+++.|+.+|...|++++|+.+++++++. | -.|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456788888888888877531 1113567899999999999999999999998752 3 22333 67889
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc-----CCCCchHHHHH--HHHHHhccCChHHHHHHHHHHh
Q 038401 441 VLNSYGKLREFETADDLYSEMQEE-----GCVFSDQVHFQ--MLSLYGARKDFNMLESLFERLD 497 (542)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 497 (542)
++..|...|++++|+.+++++++. |...|...... +..++...|.+++|..++.++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998763 53344433332 6678888999999999998864
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.09 E-value=9e-05 Score=57.00 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHH
Q 038401 379 GRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGK----LREFETA 454 (542)
Q Consensus 379 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 454 (542)
+++++|.+.|+++.+.+. ++.. +...|...+.+++|++.|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 467888888888888763 3333 6777777788888999999888864 56677777878877 7889999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHhc----cCChHHHHHHHHHHhcCC
Q 038401 455 DDLYSEMQEEGCVFSDQVHFQMLSLYGA----RKDFNMLESLFERLDSDS 500 (542)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 500 (542)
.++|+++.+.+ .....+.++.+|.. .+++++|..++++....+
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999998876 34445558888887 889999999999865443
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.09 E-value=1.8e-05 Score=61.08 Aligned_cols=87 Identities=14% Similarity=0.182 Sum_probs=70.5
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 038401 376 ARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKY----------ANVIEVFEKMRSAGYFP-DSHIIALVLNS 444 (542)
Q Consensus 376 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 444 (542)
.+.+.+++|++.++++++.. +.+...|..+..++...+++ ++|+..|+++++ +.| +...|..++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 45677889999999998874 46788888888888887765 589999999988 556 45788888888
Q ss_pred HhccC-----------cHHHHHHHHHHHHHcC
Q 038401 445 YGKLR-----------EFETADDLYSEMQEEG 465 (542)
Q Consensus 445 ~~~~g-----------~~~~A~~~~~~~~~~~ 465 (542)
|...| ++++|++.|+++++.+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 88764 7889999999998876
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.08 E-value=3.4e-06 Score=62.33 Aligned_cols=97 Identities=10% Similarity=0.082 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCch----H-H
Q 038401 399 DISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSD----Q-V 472 (542)
Q Consensus 399 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~-~ 472 (542)
+...+..++..+...|++++|++.|+++++. .| +...+..++.++...|++++|+..++++++..+..++ . .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 4567778888888999999999999998874 34 5678888888999999999999999999887622111 2 2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHh
Q 038401 473 HFQMLSLYGARKDFNMLESLFERLD 497 (542)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (542)
.+.++.++...|++++|+..+++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 2336777777787777776666543
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.06 E-value=1.6e-05 Score=59.14 Aligned_cols=78 Identities=6% Similarity=0.017 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038401 384 ATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQ 462 (542)
Q Consensus 384 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 462 (542)
|++.|+++++.. +.+...+..++.++...|++++|+..|+++++. .| +...|..++.+|...|++++|...|++++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555542 234555555555555556666666666555552 23 33455555555555555555555555555
Q ss_pred Hc
Q 038401 463 EE 464 (542)
Q Consensus 463 ~~ 464 (542)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 202
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=2.3e-05 Score=71.11 Aligned_cols=96 Identities=11% Similarity=0.006 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHH------------------HHH-HHHHHhccCChHHHHHHHHH-
Q 038401 436 HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQV------------------HFQ-MLSLYGARKDFNMLESLFER- 495 (542)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------~~~-l~~~~~~~g~~~~A~~~~~~- 495 (542)
..+..+...+.+.|++++|...|+++++.. |+.. .+. ++.+|.+.|++++|+..+++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456678889999999999999999999876 4432 334 89999999999999999999
Q ss_pred HhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 496 LDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 496 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
+..+|. +..+|+.++.+|...|++++|+..|+++.+...
T Consensus 257 l~~~p~--~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 257 LTEEEK--NPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp HHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 455554 568899999999999999999999999877553
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.03 E-value=1.1e-05 Score=62.38 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=45.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcH----------HHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038401 411 SRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREF----------ETADDLYSEMQEEGCVFSDQVHFQMLSL 479 (542)
Q Consensus 411 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (542)
.+.+.+++|++.+++.++. .| +...|..+..++...+++ ++|+..|+++++.++. ....++.++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 3456667777777777663 34 456666666666666553 3666666666665511 11223335555
Q ss_pred HhccC-----------ChHHHHHHHHH
Q 038401 480 YGARK-----------DFNMLESLFER 495 (542)
Q Consensus 480 ~~~~g-----------~~~~A~~~~~~ 495 (542)
|...| ++++|++.|++
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~k 116 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQ 116 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHH
Confidence 55543 55666665555
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.98 E-value=3.2e-05 Score=57.39 Aligned_cols=101 Identities=10% Similarity=0.024 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHH
Q 038401 417 ANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 417 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (542)
++|+..|+++++. .| +...+..++..|...|++++|+..|+++++..+. ....++.++.++...|++++|+..+++
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3577788888774 34 5677888888888999999999999998887621 122333388888899999999988888
Q ss_pred H-hcCCCCCchhHHHHHHHHHHhhcc
Q 038401 496 L-DSDSNINKKELHHVVAGIYERANR 520 (542)
Q Consensus 496 ~-~~~~~~~~~~~~~~l~~~~~~~g~ 520 (542)
. ...|..........+...+.+.|+
T Consensus 79 al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 79 GLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccHHHHHHHHHHHHHhcc
Confidence 4 333322233444455555555444
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.96 E-value=7.1e-05 Score=52.57 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHH-hcCCCCCchhHHHHHHHH
Q 038401 436 HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERL-DSDSNINKKELHHVVAGI 514 (542)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~ 514 (542)
..+..+...+...|++++|...++++++..+. .....+.++.++...|++++|...+++. ...|. ....+..++.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Confidence 34445555555556666666666665554411 1112222555666666666666666652 33333 33455555555
Q ss_pred HHhh
Q 038401 515 YERA 518 (542)
Q Consensus 515 ~~~~ 518 (542)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.92 E-value=2.6e-05 Score=56.16 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038401 398 KDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 398 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 464 (542)
.++..+..++.+|...|++++|+..|+++++. .| +...|..++.+|...|++++|+..|+++++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45666777777777777777777777777763 24 3466777777777777777777777777764
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.85 E-value=0.00013 Score=51.20 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HH
Q 038401 399 DISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-ML 477 (542)
Q Consensus 399 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~ 477 (542)
+...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|...++++.+..+ .+...+. ++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCHHHHHHHH
Confidence 45677778888888899999999999888743 22567788888888889999999999999888762 2222233 66
Q ss_pred HHHhcc
Q 038401 478 SLYGAR 483 (542)
Q Consensus 478 ~~~~~~ 483 (542)
.++...
T Consensus 85 ~~~~~~ 90 (91)
T 1na3_A 85 NAKQKQ 90 (91)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 655443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.78 E-value=8.1e-05 Score=53.49 Aligned_cols=62 Identities=13% Similarity=0.054 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHH
Q 038401 434 DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (542)
+...+..++.+|...|++++|+..|+++++.++.. ...++.++.+|...|++++|++.+++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDY-VGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56778888889999999999999999999887221 223334889999999999999999884
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.47 E-value=0.00074 Score=62.87 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=41.0
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc-----CCCCchHHH-HH-HH
Q 038401 412 RNKKYANVIEVFEKMRSA---GYFPD----SHIIALVLNSYGKLREFETADDLYSEMQEE-----GCVFSDQVH-FQ-ML 477 (542)
Q Consensus 412 ~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~-~~-l~ 477 (542)
..|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++++. |...|+... +. ++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 345566666666655431 11121 144555556666666666666666655432 222232222 11 55
Q ss_pred HHHhccCChHHHHHHHHH
Q 038401 478 SLYGARKDFNMLESLFER 495 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~ 495 (542)
.+|...|++++|..++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHH
Confidence 555555555555555555
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.44 E-value=0.00028 Score=50.43 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=25.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 408 ELFSRNKKYANVIEVFEKMRSAGYFP-DSH-IIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 408 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
..+...|++++|+..|+++++. .| +.. .+..++.+|...|++++|...|+++++.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3344445555555555544442 23 223 44444444444455555555555444443
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.43 E-value=0.00066 Score=51.78 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHhccCChH
Q 038401 414 KKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLR---EFETADDLYSEMQEEGCVFS---DQVHFQMLSLYGARKDFN 487 (542)
Q Consensus 414 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 487 (542)
.....+.+-|.+..+.|. ++..+...+..++.+.+ +.++++.+++...+.. .| ....|.++-++.+.|+++
T Consensus 12 ~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHH
Confidence 345566677777766554 67777777888888877 6678888888888865 23 233444888888899999
Q ss_pred HHHHHHHH-HhcCCC
Q 038401 488 MLESLFER-LDSDSN 501 (542)
Q Consensus 488 ~A~~~~~~-~~~~~~ 501 (542)
+|.+.+++ +..+|+
T Consensus 89 ~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCC
Confidence 99999988 455665
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.002 Score=57.42 Aligned_cols=59 Identities=7% Similarity=-0.084 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH
Q 038401 434 DSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 495 (542)
+..++..+...+...|++++|...+++++..+ |+...+. ++.++.-.|++++|.+.+++
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444455555555555555554 2222222 45555555555555555555
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.37 E-value=0.0011 Score=46.49 Aligned_cols=62 Identities=8% Similarity=-0.129 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHcCCCCchHH--HHHHHHHHhccCChHHHHHHHHHHh
Q 038401 433 PDSHIIALVLNSYGKLRE---FETADDLYSEMQEEGCVFSDQV--HFQMLSLYGARKDFNMLESLFERLD 497 (542)
Q Consensus 433 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (542)
+|...+..+..++...++ .++|...++++++.+ |+.. .+.++..+.+.|++++|+..++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456667777776654433 678888888888876 3332 2227777888888888888888854
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.31 E-value=0.00066 Score=63.24 Aligned_cols=87 Identities=6% Similarity=-0.053 Sum_probs=68.5
Q ss_pred hCCHHHHHHHHHHHHHcC---CCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHH
Q 038401 378 AGRIEEATWVFRQAFDAG---EVK----DISVFGCMIELFSRNKKYANVIEVFEKMRSA-----G-YFPDS-HIIALVLN 443 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~l~~ 443 (542)
.|++++|+.+++++++.. ..| -..+++.++.+|...|++++|+.+++++++- | -.|+. .+++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 477888888888876521 111 2567899999999999999999999998752 3 23333 67899999
Q ss_pred HHhccCcHHHHHHHHHHHHHc
Q 038401 444 SYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 444 ~~~~~g~~~~A~~~~~~~~~~ 464 (542)
.|..+|++++|+.+++++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 999999999999999998863
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.31 E-value=0.0023 Score=59.76 Aligned_cols=91 Identities=12% Similarity=-0.018 Sum_probs=59.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc-----CCCCchHHH
Q 038401 406 MIELFSRNKKYANVIEVFEKMRSA---GYFPD----SHIIALVLNSYGKLREFETADDLYSEMQEE-----GCVFSDQVH 473 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~ 473 (542)
.+..+...|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++++. |...|+...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 344556678888888888887753 12222 256777777888888888888888877653 333343322
Q ss_pred -HH-HHHHHhccCChHHHHHHHHHH
Q 038401 474 -FQ-MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 474 -~~-l~~~~~~~g~~~~A~~~~~~~ 496 (542)
+. ++.+|...|++++|..++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22 777777788888888777774
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.27 E-value=0.00058 Score=48.71 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=63.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhcc
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEVKDIS-VFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDS-HIIALVLNSYGKL 448 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 448 (542)
....+...|++++|+..++++++.. +.+.. .+..++.++...|++++|+..|+++++. .|+. ..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------
Confidence 4556778899999999999999874 35677 8999999999999999999999999984 4543 33311
Q ss_pred CcHHHHHHHHHHHHHc
Q 038401 449 REFETADDLYSEMQEE 464 (542)
Q Consensus 449 g~~~~A~~~~~~~~~~ 464 (542)
+.+.++...|++....
T Consensus 75 ~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHHHHCCTTHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5666777777665543
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.27 E-value=0.0025 Score=44.54 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=54.5
Q ss_pred CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 397 VKDISVFGCMIELFSRNKK---YANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 397 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
+.++..+..+..++...++ .++|..++++.++ ..| +...+..++..+.+.|++++|+..|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4677888888888765554 7899999999988 446 55777888888999999999999999999876
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.23 E-value=0.017 Score=51.52 Aligned_cols=154 Identities=9% Similarity=-0.043 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHH
Q 038401 296 EPNAITYSTIIAIWG--KAG---KLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRET 370 (542)
Q Consensus 296 ~p~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (542)
+.+...|...+++.. ..+ +..+|..+|+++++.. |-....+..+..+|.. ..... +. ....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~----------~~~~~-~~--~~~~ 256 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIV----------RHSQH-PL--DEKQ 256 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------HHHHS-CC--CHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------HhccC-CC--chhh
Confidence 556677777776543 233 3578888888888873 2234555555444430 00000 00 0000
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLRE 450 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 450 (542)
. . ....+.+... .... .+.++.++..+...+...|++++|+..+++++..+ |+...|..+...+...|+
T Consensus 257 ~-~------~l~~a~~a~~-a~~~-~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~ 325 (372)
T 3ly7_A 257 L-A------ALNTEIDNIV-TLPE-LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGM 325 (372)
T ss_dssp H-H------HHHHHHHHHH-TCGG-GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTC
T ss_pred H-H------HHHHHHHHHH-hccc-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCC
Confidence 0 0 0111222111 1122 24678888888888888899999999999999954 888888888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHH
Q 038401 451 FETADDLYSEMQEEGCVFSDQVHFQML 477 (542)
Q Consensus 451 ~~~A~~~~~~~~~~~~~~~~~~~~~l~ 477 (542)
+++|...|+++.+.+ |...++.+.
T Consensus 326 ~~eA~e~~~~AlrL~---P~~~t~~~~ 349 (372)
T 3ly7_A 326 NREAADAYLTAFNLR---PGANTLYWI 349 (372)
T ss_dssp HHHHHHHHHHHHHHS---CSHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---CCcChHHHH
Confidence 999999999999987 444455443
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.19 E-value=0.0048 Score=47.07 Aligned_cols=84 Identities=15% Similarity=0.102 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHH
Q 038401 380 RIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNK---KYANVIEVFEKMRSAGYFP--DSHIIALVLNSYGKLREFETA 454 (542)
Q Consensus 380 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 454 (542)
....+.+.|.+..+.+. ++..+...+..++++.+ +.++++.+++...+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45566666776666554 67777777788888877 5668888888887743 24 235555666777888888888
Q ss_pred HHHHHHHHHcC
Q 038401 455 DDLYSEMQEEG 465 (542)
Q Consensus 455 ~~~~~~~~~~~ 465 (542)
+++++.+++..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 88888888865
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.18 E-value=0.0021 Score=59.93 Aligned_cols=91 Identities=9% Similarity=-0.037 Sum_probs=70.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHcC---CCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHH
Q 038401 374 ILARAGRIEEATWVFRQAFDAG---EVK----DISVFGCMIELFSRNKKYANVIEVFEKMRSA-----G-YFPDS-HIIA 439 (542)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~ 439 (542)
-+.+.|++++|+..++++++.. ..+ ...+++.++.+|...|++++|+.++++++.- | ..|+. .+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3556788888888888887532 111 2567889999999999999999999988752 2 22333 6788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHc
Q 038401 440 LVLNSYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~~~~~ 464 (542)
.++..|...|++++|+.+++++++.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998763
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.06 E-value=0.12 Score=44.21 Aligned_cols=108 Identities=7% Similarity=0.072 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhc-----cCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhc-cCCh
Q 038401 416 YANVIEVFEKMRSAGYFPD---SHIIALVLNSYGK-----LREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGA-RKDF 486 (542)
Q Consensus 416 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 486 (542)
...|...++++++ +.|+ ...|..++..|.+ -|+.++|.+.|+++++.++-..-...+.++..++. .|+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 5677888888888 5687 4678888888887 49999999999999998721112233337888887 5999
Q ss_pred HHHHHHHHHHhcCCCC-CchhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 487 NMLESLFERLDSDSNI-NKKELHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 487 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
++|.+.+++....+.. .|. ..+ ...++-++|..+++++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~---~~l----an~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPH---NKL----LVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSS---CHH----HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCC---hhH----HHHHHHHHHHHHHHHhH
Confidence 9999999995433322 121 122 23344566666666543
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.94 E-value=0.011 Score=43.32 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=49.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHHHHcCCCCc-h--HHHHHHHHHHhcc
Q 038401 410 FSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFET---ADDLYSEMQEEGCVFS-D--QVHFQMLSLYGAR 483 (542)
Q Consensus 410 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~-~--~~~~~l~~~~~~~ 483 (542)
-........+.+-|.+....|. |+..+--.+.+++.+.....+ ++.+++.+.+.+ .| . .-.|.++-++.+.
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHh
Confidence 3334444555555555544333 555555556666666655444 666666666643 12 1 1222366667777
Q ss_pred CChHHHHHHHHH-HhcCCC
Q 038401 484 KDFNMLESLFER-LDSDSN 501 (542)
Q Consensus 484 g~~~~A~~~~~~-~~~~~~ 501 (542)
|++++|.+.++. +..+|+
T Consensus 88 g~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHhCCC
Confidence 777777777777 344554
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.91 E-value=0.086 Score=54.23 Aligned_cols=76 Identities=9% Similarity=0.115 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 038401 338 QTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYA 417 (542)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 417 (542)
..++..+.+.|..+.|.++.+. ...-.......|+++.|.++.+.+ .+...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~--------~~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD--------QDQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC--------HHHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC--------cchheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence 4455555556666666554321 112234445667777776664332 45677777888888888888
Q ss_pred HHHHHHHHHH
Q 038401 418 NVIEVFEKMR 427 (542)
Q Consensus 418 ~A~~~~~~~~ 427 (542)
.|++.|.++.
T Consensus 699 ~A~~~y~~~~ 708 (814)
T 3mkq_A 699 LAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcc
Confidence 8888777764
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.092 Score=54.00 Aligned_cols=164 Identities=12% Similarity=0.109 Sum_probs=95.5
Q ss_pred HHCCChHHHHH-HHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHH
Q 038401 170 VENHKFVEALS-VFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEA 248 (542)
Q Consensus 170 ~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 248 (542)
...+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+. |. .-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHH
Confidence 45677777655 44211 1022225566666677777777655421 11 112334567888888
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038401 249 IHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSS 328 (542)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (542)
.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+.....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7775433 3567788888888888888888888877642 333444455566766666655555544
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHH
Q 038401 329 GVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQ 390 (542)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (542)
|. ++....+|.+.|++++|.+++.+ .+++++|..+-+.
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~------------------~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIK------------------SQRFSEAAFLGST 774 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHH------------------TTCHHHHHHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHH------------------cCChHHHHHHHHH
Confidence 31 23334445666777777665544 4566666665554
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.86 E-value=0.0046 Score=44.46 Aligned_cols=69 Identities=6% Similarity=-0.070 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-----CCchHHHHH-HHHHHhccCChHHHHHHHHHH-hcCCC
Q 038401 433 PDSHIIALVLNSYGKLREFETADDLYSEMQEEGC-----VFSDQVHFQ-MLSLYGARKDFNMLESLFERL-DSDSN 501 (542)
Q Consensus 433 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~ 501 (542)
.+..-+..++..+.+.|+++.|..+|+.+.+... ..+....+. ++.++.+.|++++|..++++. ...|.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3555666788899999999999999999887521 122333334 889999999999999999994 45665
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.034 Score=43.62 Aligned_cols=132 Identities=12% Similarity=0.014 Sum_probs=95.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 038401 370 TAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLR 449 (542)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 449 (542)
.-.......|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+..+ +..+.-.|.-.|
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg 74 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTG 74 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhC
Confidence 3456678899999999998765 5788999999999999999999999988754 233444556678
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHH
Q 038401 450 EFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMN 529 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 529 (542)
+.+.-.+.-+.+...+ .... ...++.-.|+++++++++.+... .+.++ .+++ ..|..+.|.++.+
T Consensus 75 ~~e~L~kla~iA~~~g---~~n~---af~~~l~lGdv~~~i~lL~~~~r-----~~eA~-~~A~---t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRE---DFGS---MLLNTFYNNSTKERSSIFAEGGS-----LPLAY-AVAK---ANGDEAAASAFLE 139 (177)
T ss_dssp CHHHHHHHHHHHHHTT---CHHH---HHHHHHHHTCHHHHHHHHHHTTC-----HHHHH-HHHH---HTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc---cHHH---HHHHHHHcCCHHHHHHHHHHCCC-----hHHHH-HHHH---HcCcHHHHHHHHH
Confidence 8877777666666655 2222 33456678999999999987543 12334 2223 3567788888887
Q ss_pred HH
Q 038401 530 RM 531 (542)
Q Consensus 530 ~~ 531 (542)
++
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 74
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.62 E-value=0.0094 Score=50.89 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhc-----cCChHHHHHHHHH-HhcCCCCCchhHHHHHHHHHHhh-cch
Q 038401 450 EFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGA-----RKDFNMLESLFER-LDSDSNINKKELHHVVAGIYERA-NRL 521 (542)
Q Consensus 450 ~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~-----~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-g~~ 521 (542)
...+|...++++++.++...+...+. ++..|.. -|+.++|.++|++ +...|+. ....+...++.+++. |++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-DPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHTTTTTTCH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCCH
Confidence 46789999999999872222344455 8888888 4999999999999 6667653 246777888988885 999
Q ss_pred hhHHHHHHHHHhcCCC
Q 038401 522 NDASRIMNRMNKRRTF 537 (542)
Q Consensus 522 ~~A~~~~~~~~~~~~~ 537 (542)
++|.++++++....++
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999998877
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.52 E-value=2.8e-06 Score=76.95 Aligned_cols=245 Identities=13% Similarity=0.175 Sum_probs=153.8
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHH
Q 038401 53 DRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMIN 132 (542)
Q Consensus 53 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 132 (542)
.+..|..+..+....+++.+|++.|-+. -|+..|..++.+..+.|.+++...++...++. ..++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4557888888888888888877665332 25667888888888999999988888877765 334455567888
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhc--------------------CCCC
Q 038401 133 VFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEV--------------------NCPL 192 (542)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------------~~~~ 192 (542)
+|++.++..+.++++ . .|+......+.+-|...|.++.|.-+|..+... .-..
T Consensus 125 ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 898888765433322 1 255555566677777777777776666554321 0124
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 038401 193 DLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIK 272 (542)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 272 (542)
++.||..+-.+|...+++.-|.-.--.+.-. +| -...++..|-..|.+++.+.+++.-.... ......|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 6677888888888777776665443333321 11 13345566777888888888887766432 456778888888
Q ss_pred HHHccCCHHHHHHHHHHHHHc-CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 038401 273 IYGKSLEHEKATNLMQEMQNR-GIEP------NAITYSTIIAIWGKAGKLDRAA 319 (542)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~~~a~ 319 (542)
.|++- ++++..+.++..-.+ +++- ....|.-++-.|.+-.+++.|.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 88775 445544444332221 1110 1234555555555555555544
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.44 E-value=0.047 Score=39.97 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=25.7
Q ss_pred HHHHHHHHhccCChHH---HHHHHHHHhcCCCC-CchhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 473 HFQMLSLYGARKDFNM---LESLFERLDSDSNI-NKKELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 473 ~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
.+.+++++.++.+... ++.+++.+.....+ ...+..+.++-.+++.|+|++|+++++.+.+
T Consensus 38 ~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 38 QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334444444444333 44444443322111 1223444444444455555555555444444
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.44 E-value=0.038 Score=39.53 Aligned_cols=67 Identities=6% Similarity=-0.045 Sum_probs=49.1
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC------CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 038401 17 PSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRG------IAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQD 83 (542)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 83 (542)
.+...+-.+...+.+.|++..|...|+...+.- ..+...++..+..++.+.|+++.|+..++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456667778888888888888888888776531 1234567777777888888888888888877765
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.42 E-value=0.0083 Score=45.00 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=57.5
Q ss_pred CcCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCH----HHHHHHH--HH-HhccCcHHHHHHHHHHHHH
Q 038401 397 VKDISVFGCMIELFSRNKKY------ANVIEVFEKMRSAGYFPDS----HIIALVL--NS-YGKLREFETADDLYSEMQE 463 (542)
Q Consensus 397 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~----~~~~~l~--~~-~~~~g~~~~A~~~~~~~~~ 463 (542)
+.|+.+|-..+...-+.|++ ++.+++|+++... ++|+. ..|..+- .+ +...++.++|+++|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45677777777777777777 7777777777763 44532 1122111 11 1234667777777777766
Q ss_pred cCCCCchHHHHHHHHHHhccCChHHHHHHHHHH
Q 038401 464 EGCVFSDQVHFQMLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 464 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (542)
.+-.- ..++...+..-.+.|+.+.|.+++.+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 43111 222222566666777777777777774
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.26 Score=38.68 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=59.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHH
Q 038401 310 GKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFR 389 (542)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (542)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.... .+..+.-.|...|+.+.-..+-+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-----SFDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----CHHHHHHHHHHhCCHHHHHHHHH
Confidence 3567777777776654 256677777777777777777777777654 34445555555666655555555
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038401 390 QAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEK 425 (542)
Q Consensus 390 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 425 (542)
.+...|. ++....++...|++++++++|.+
T Consensus 85 iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 85 IAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444332 33344445556666666666543
No 233
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.22 E-value=1 Score=43.99 Aligned_cols=78 Identities=6% Similarity=-0.065 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHH
Q 038401 416 YANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFE 494 (542)
Q Consensus 416 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~ 494 (542)
..++...+....... ++.......+....+.|+++.|...|+.+.... ........ ++.++...|+.++|..+++
T Consensus 268 ~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~--~~~~r~~YW~~ra~~~~g~~~~a~~~~~ 343 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILH 343 (618)
T ss_dssp CHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc--cccHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334444444443321 333223333333344566666666666554421 11122222 5556666666666666666
Q ss_pred HHh
Q 038401 495 RLD 497 (542)
Q Consensus 495 ~~~ 497 (542)
++.
T Consensus 344 ~~a 346 (618)
T 1qsa_A 344 QLM 346 (618)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 234
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.15 E-value=0.035 Score=42.71 Aligned_cols=131 Identities=11% Similarity=0.129 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcC-CCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHH
Q 038401 370 TAITILARAGRIEEATWVFRQAFDAG-EVKD-------ISVFGCMIELFSRNKKYANVIEVFEKMRSA--GYFPDSHIIA 439 (542)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~ 439 (542)
.-+..+...|.++.|+-+...++... ..|+ ..++..+++++...|++..|...|++.++. .+.-+..+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33555666677777766666644321 1111 124455666666777777777777766532 1111111111
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038401 440 LVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIY 515 (542)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 515 (542)
.+.. ...... ..........-|.++.+|...|++++|+..++.++...- ...+...|+++|
T Consensus 105 ~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R--t~kvnm~LakLy 165 (167)
T 3ffl_A 105 STGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR--TPKINMLLANLY 165 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC--CHHHHHHHHHHC
T ss_pred cccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc--CHHHHHHHHHHh
Confidence 1100 000000 001111223344488888888888888888888754322 335666666655
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.66 E-value=1.9e-05 Score=71.61 Aligned_cols=244 Identities=12% Similarity=0.141 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 038401 19 VFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIEL 98 (542)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (542)
+..|..|..+..+.+...+|++-|- +. -|+..|..+|....+.|.+++-++++.-..+. ..++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 3457777777777777666665442 11 15556777777777777777777766655544 2234444566777
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHc--------------------CCCCC
Q 038401 99 ARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQ--------------------GVKPD 158 (542)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------g~~~~ 158 (542)
|++.++..+..+. +. .|+..-...+.+-|...|.++.|.-+|..+..- .-..+
T Consensus 126 yAk~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7777665432221 11 233333333444444444444443333322110 01235
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 038401 159 TVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRV 238 (542)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 238 (542)
+.||..+-.+|...+.+.-|...--.+.- ...-...++..|-..|.+++.+.+++...... ......|+-|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 56777777777777776655443222221 11122335555666677777666666655332 3445556666655
Q ss_pred HHhcCcHHHHHHHHHHHHhc-CCCC------cHHHHHHHHHHHHccCCHHHHH
Q 038401 239 YGEAELFGEAIHLFRLMQRK-EIEQ------NVVTYNTMIKIYGKSLEHEKAT 284 (542)
Q Consensus 239 ~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~ 284 (542)
|++- ++++..+.++....+ +++. ....|..++-.|.+-.+++.|.
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5544 333333333332221 1111 2234555555555555555443
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.53 E-value=0.17 Score=38.11 Aligned_cols=102 Identities=10% Similarity=0.113 Sum_probs=52.7
Q ss_pred CCcHHHHHHHHHHHHHhcCH------HHHHHHHHHHHhCCCCCCHH-hHHHHHHHH------hccCCHHHHHHHHHHHHh
Q 038401 16 SPSVFAYNVVLRNVLRAKQW------ELAHGLFDEMRQRGIAPDRY-TYSTLITCF------GKEGMFDSAISWLQQMEQ 82 (542)
Q Consensus 16 ~~~~~~~~~ll~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~------~~~g~~~~a~~~~~~~~~ 82 (542)
+.|..+|-..+..+-+.|++ ++.+++|++.... ++|+.. .|...|..+ ...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45666777777777777777 7777777777664 444321 122222211 112455555555555544
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 038401 83 DRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSG 119 (542)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 119 (542)
.+ +-=...|....+.-.++|++..|.+++...+..+
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 31 1114444444444445555555555555555544
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.34 E-value=0.57 Score=34.50 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 038401 197 CNIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKE 259 (542)
Q Consensus 197 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 259 (542)
+...+......|..++..+++..+.... +|++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3444444444455555555544432221 3444444445555555555555555555444444
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.29 E-value=0.21 Score=36.78 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHH-hcCCC
Q 038401 430 GYFPDSHIIALVLNSYGKLR---EFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERL-DSDSN 501 (542)
Q Consensus 430 ~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 501 (542)
+-.|+..+--.+.+++.+.. +..+++.+++.+.+.+......-.|.++-++.+.|++++|.+..+.+ ..+|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 33466666555666666554 34567778877777651111223333777788888888888888884 44555
No 239
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.18 E-value=0.057 Score=41.54 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=67.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 038401 406 MIELFSRNKKYANVIEVFEKMRSA-GYFPDS-------HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQML 477 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 477 (542)
-+..+...|.++.|+-+...++.. +..|+. .++..+++++...|++..|...|++++.....-+......
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~-- 103 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR-- 103 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc--
Confidence 345566778888888777765542 122331 3556677777888888888888888765432112111100
Q ss_pred HHHhccCChHHHHHHHHH-Hh-cCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Q 038401 478 SLYGARKDFNMLESLFER-LD-SDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKRR 535 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 535 (542)
...| .+. -+ ........+.-+.++.+|.+.|++++|+.+++.++.+.
T Consensus 104 ---~~~~--------~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 104 ---PSTG--------NSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred ---cccc--------ccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 0000 000 00 00011234677889999999999999999999876544
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.10 E-value=2.2 Score=39.89 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=60.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH--HHH
Q 038401 370 TAITILARAGRIEEATWVFRQAFDAGEVK-D----ISVFGCMIELFSRNKKYANVIEVFEKMRS----AGYFPDS--HII 438 (542)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~--~~~ 438 (542)
.+...+...|++.+|..++..+...-... + ...+...++.|...+++..|..+++++.. ....|+. ..+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 35666777777777777777765321111 1 34556667778888888888888887642 1112221 345
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHc
Q 038401 439 ALVLNSYGKLREFETADDLYSEMQEE 464 (542)
Q Consensus 439 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 464 (542)
...+..+...+++.+|.+.|..+.+.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 56666777778888888888877653
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.00 E-value=0.47 Score=35.43 Aligned_cols=70 Identities=6% Similarity=-0.013 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHH-HhcCCC
Q 038401 432 FPDSHIIALVLNSYGKLR---EFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFER-LDSDSN 501 (542)
Q Consensus 432 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~ 501 (542)
.|+..+--.+.+++.+.. +..+++.+++.+.+.+....-.-.|.++-++.+.|++++|.++.+. +..+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 567766666777777665 4557888888888865222233344488889999999999999999 455665
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.56 E-value=4.7 Score=41.16 Aligned_cols=151 Identities=11% Similarity=0.064 Sum_probs=78.4
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhccCcHHHH
Q 038401 377 RAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHI--IALVLNSYGKLREFETA 454 (542)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A 454 (542)
-.|+.+....++..+.+. ...+..-.-.+.-++...|+.+.+..+.+.+... ..|.... ...+..+|+..|+....
T Consensus 502 GTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aI 579 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAV 579 (963)
T ss_dssp TCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHH
T ss_pred ccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 446766667777766653 1122222333334445678888888887777652 1222211 22344567777887777
Q ss_pred HHHHHHHHHcCCCCchHHHHH--HHHHHhccCChHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHhhcchhhHHHHHHHH
Q 038401 455 DDLYSEMQEEGCVFSDQVHFQ--MLSLYGARKDFNMLESLFERLDSDSNINK-KELHHVVAGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 531 (542)
.++++.+.... .+.+... ++-++...|+.+.+.++++.+....++.- ..+-..++.++...| ..+|+..+.++
T Consensus 580 q~LL~~~~~d~---~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~-~~~aid~L~~L 655 (963)
T 4ady_A 580 KRLLHVAVSDS---NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-LQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-CHHHHHHHHHH
T ss_pred HHHHHHhccCC---cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC-cHHHHHHHHHH
Confidence 77888777643 2222222 44455556666666666665544333111 122223333332222 25666677666
Q ss_pred Hh
Q 038401 532 NK 533 (542)
Q Consensus 532 ~~ 533 (542)
..
T Consensus 656 ~~ 657 (963)
T 4ady_A 656 TK 657 (963)
T ss_dssp HT
T ss_pred cc
Confidence 53
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.37 E-value=1.1 Score=33.05 Aligned_cols=138 Identities=11% Similarity=0.055 Sum_probs=77.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHH
Q 038401 310 GKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFR 389 (542)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (542)
.-.|..++..++..+..+.. +..-++-++--....-+-+...++++.+-+.-. ...+|+.......+-
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD---------is~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD---------LDKCQNLKSVVECGV 85 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC---------GGGCSCTHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcC---------cHhhhcHHHHHHHHH
Confidence 34566777777776666542 334444444444444455555555555432100 112333333333333
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 390 QAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 390 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.+ ..+.......++.+..+|+-+.-.+++..++. +.+|++..+..+..+|.+.|+..+|.+++.++.+.|
T Consensus 86 ~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 86 IN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred Hh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 22 12334455556666777777777777777543 345677777777778888888888888887777776
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.22 E-value=0.85 Score=33.57 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=42.1
Q ss_pred CCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 396 EVKDISVFGCMIELFSRNKK---YANVIEVFEKMRSAGYFP--DSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 396 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
..|++.+--.+..++.+..+ ..+++.+++.+.+.+ | ....+-.+.-++.+.|++++|+++.+.+++..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 34556665566666666544 345667777766643 4 23445556667777777777777777777754
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.42 Score=47.51 Aligned_cols=50 Identities=6% Similarity=0.018 Sum_probs=24.0
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHHHh
Q 038401 446 GKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFERLD 497 (542)
Q Consensus 446 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 497 (542)
...|+++-|+++.++++..- |.+-.+|. |+.+|...|+++.|.-.++.++
T Consensus 348 l~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34455555555555555443 22223333 5555555555555555555443
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.60 E-value=1 Score=44.87 Aligned_cols=128 Identities=9% Similarity=0.028 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCc-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCC-HHHHHHHHHHHHHc------CCCC-CH----
Q 038401 233 NTLLRVYGEAEL-FGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLE-HEKATNLMQEMQNR------GIEP-NA---- 299 (542)
Q Consensus 233 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~p-~~---- 299 (542)
..++..+...++ .+.|..+++++.......+......++..+...++ --+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444454555555 57788888888776422222222333333333332 23455555544321 1111 11
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 038401 300 ------ITYSTIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELR 361 (542)
Q Consensus 300 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (542)
.....-...|...|+++.|+.+-++..... +-+..+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 011112234667899999999999988873 5578999999999999999999999998874
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.25 E-value=1.9 Score=32.17 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=49.3
Q ss_pred CCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 396 EVKDISVFGCMIELFSRNKK---YANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 396 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
..+++.+--.+.+++.+..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|+++.+.+++..
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 35677777777888877665 44677888888774311123445556678889999999999999888876
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.84 E-value=13 Score=38.16 Aligned_cols=256 Identities=7% Similarity=-0.065 Sum_probs=135.9
Q ss_pred HHHhcCcHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--C-----CCHHHHHHHHHH
Q 038401 238 VYGEAELFGEAIHLFRLMQRKE--IEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNRGI--E-----PNAITYSTIIAI 308 (542)
Q Consensus 238 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----p~~~~~~~l~~~ 308 (542)
+....|+.++++.++......+ -.+....-..+.-+....|..+++..++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4567788888888887766421 122233334445556667766678887777654321 0 111111222222
Q ss_pred H--HhcCCHHHHHHHHHHHHhcCCCCCHHH--HH--HHHHHHHHcCCHHHHHHHHHHhcCCCCCCH-HHHHHH--HHHhC
Q 038401 309 W--GKAGKLDRAAMLFQKLRSSGVEIDPVL--YQ--TMIVAYERVGLVAHAKRLLHELRQPNTIPR-ETAITI--LARAG 379 (542)
Q Consensus 309 ~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~l~~~--~~~~g 379 (542)
+ ...++. ++.+.+..+.... +... .. ++...+.-.|+.+....++..+.......+ ..+..+ +...|
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCH-HHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence 2 334443 4455555554432 2211 12 233334456777777777766543222222 223333 34678
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 038401 380 RIEEATWVFRQAFDAGEVKDISV--FGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDL 457 (542)
Q Consensus 380 ~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 457 (542)
+.+.+..+++.+... ..|.... -.+++.+|+..|+.....++++.+.+.. ..+......+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888887763 2222222 1234556778899877777999888631 12222222333344456666667777
Q ss_pred HHHHHHcCCCCchHHHHH-HHHHHhccCCh-HHHHHHHHHHhcCCC
Q 038401 458 YSEMQEEGCVFSDQVHFQ-MLSLYGARKDF-NMLESLFERLDSDSN 501 (542)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~-~~A~~~~~~~~~~~~ 501 (542)
++.+.+.+ .|..-... ++-.....|+. .+|+..+..+..+++
T Consensus 617 v~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d 660 (963)
T 4ady_A 617 VQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPV 660 (963)
T ss_dssp TTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSS
T ss_pred HHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCC
Confidence 76666544 23222222 44444444443 678889999876654
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.72 E-value=1.5 Score=40.07 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=51.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHh-----CCCCccHhHHHHH
Q 038401 56 TYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKS-----SGIVPDLVAYNTM 130 (542)
Q Consensus 56 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 130 (542)
+...++..+...|++.+++..+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34556666777788888887777776653 34667778888888888888888887777643 3777776654443
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.48 E-value=0.94 Score=41.48 Aligned_cols=67 Identities=7% Similarity=0.130 Sum_probs=49.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 038401 371 AITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRS-----AGYFPDSHII 438 (542)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 438 (542)
++..+...|++++++..++.+... .+.+...|..++.++...|+..+|++.|+++.+ .|+.|+..+-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 445566778888888777777765 345777888888888888888888888887654 3777876543
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.28 E-value=5.4 Score=42.64 Aligned_cols=139 Identities=10% Similarity=-0.007 Sum_probs=87.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC----CC--C-----------
Q 038401 304 TIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGLVAHAKRLLHELRQP----NT--I----------- 366 (542)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~----------- 366 (542)
.++..+...+.++.+.++..- .+.++...-.+..++...|++++|.+.|++.... +. .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345556666666666554322 2334544455677788999999999999886421 00 0
Q ss_pred ---------CHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038401 367 ---------PRETAITILARAGRIEEATWVFRQAFDAGEVKDI----SVFGCMIELFSRNKKYANVIEVFEKMRSAGYFP 433 (542)
Q Consensus 367 ---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 433 (542)
-|..++..+.+.+.++.+.++-+.+++...+.+. ..|..+...+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0233456667778888888888888765333222 2577788888888999999888877765432
Q ss_pred CHHHHHHHHHHHhccC
Q 038401 434 DSHIIALVLNSYGKLR 449 (542)
Q Consensus 434 ~~~~~~~l~~~~~~~g 449 (542)
-...+..++..++..|
T Consensus 970 r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 2345555555444443
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.88 E-value=4.7 Score=36.68 Aligned_cols=131 Identities=12% Similarity=0.118 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHhccC-cHHH----HHHHHHHHHHcCCCCchHHH
Q 038401 403 FGCMIELFSRNKKYANVIEVFEKMRSA-GYFPD---SHIIALVLNSYGKLR-EFET----ADDLYSEMQEEGCVFSDQVH 473 (542)
Q Consensus 403 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~g-~~~~----A~~~~~~~~~~~~~~~~~~~ 473 (542)
...|+..|.+.|+.++..+++...... +.-|- ......++..+.... ..+. ..+.++.+.......-....
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666555431 11121 233445555554422 2222 23333333332211101111
Q ss_pred H-HHHHHHhccCChHHHHHHHHHHhcCC-----CCCchhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 038401 474 F-QMLSLYGARKDFNMLESLFERLDSDS-----NINKKELHHVVAGIYERANRLNDASRIMNRMNK 533 (542)
Q Consensus 474 ~-~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 533 (542)
- .++..|...|++.+|.+++.++...- ...--+.|..-+++|...|++.++..++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 1 27788888888888887777753321 111136677778888888888888888877543
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.77 E-value=3.7 Score=28.41 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 038401 69 MFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKS 117 (542)
Q Consensus 69 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 117 (542)
+.-+..+.++.+......|++....+.+++|.+.+++..|.++|+-++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555555555666666666666666666666666666666553
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.19 E-value=5.8 Score=42.40 Aligned_cols=145 Identities=9% Similarity=-0.013 Sum_probs=84.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------------
Q 038401 370 TAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYF----------------- 432 (542)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------- 432 (542)
.++..+...+.++-+.++..-. +.++..--.++.++...|++++|.+.|++.-. |+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 3444555566666555543321 22333334455666777777777777765421 110
Q ss_pred ------CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH-H--HHH-HHHHHhccCChHHHHHHHHHHhcCCCC
Q 038401 433 ------PDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ-V--HFQ-MLSLYGARKDFNMLESLFERLDSDSNI 502 (542)
Q Consensus 433 ------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~--~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~ 502 (542)
.-..-|..++..+.+.|.++.+.++-+.+++.....++. . .+. +...+...|++++|...+-.++...-
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 012346677777778888888888888777654222221 1 233 66777788888888888877654332
Q ss_pred CchhHHHHHHHHHHhhcchh
Q 038401 503 NKKELHHVVAGIYERANRLN 522 (542)
Q Consensus 503 ~~~~~~~~l~~~~~~~g~~~ 522 (542)
.......++..++..|..+
T Consensus 970 -r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHH
T ss_pred -HHHHHHHHHHHHHhCCChh
Confidence 2355666666666666544
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.14 E-value=4.1 Score=28.16 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=53.4
Q ss_pred HHHHHhc-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038401 27 RNVLRAK-QWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIE 97 (542)
Q Consensus 27 ~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 97 (542)
..+-+.. +.=++.+-++.+...++-|++.+..+.+++|.+.+++..|.++|+-.... +.+...+|..+++
T Consensus 17 ~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 17 TYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3333444 56678888899999899999999999999999999999999999988654 2223445665553
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.15 E-value=2.2 Score=39.62 Aligned_cols=99 Identities=15% Similarity=0.004 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHH--HH
Q 038401 367 PRETAITILARAGRIEEATWVFRQAFDAGE--VKDISVFGCMIELFSRNKKYANVIEVFEKMRSA---GYFPDSHI--IA 439 (542)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~--~~ 439 (542)
....++..+.+.|+++.|.+.+.++.+... ..-...+-..++.+...+++..+...++++... +-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456678888888888888888888876422 223566777778888888888888888887542 32233221 11
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 440 LVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.-+..+...+++.+|.+.|-.+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 22233456778888888887776543
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.32 E-value=5.4 Score=33.67 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=29.9
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038401 375 LARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRS 428 (542)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 428 (542)
+.+.|++++|++....-++.. +.|...-..++..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445556666666555555542 34555555555666666666666665555555
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.01 E-value=2.7 Score=35.46 Aligned_cols=118 Identities=9% Similarity=0.025 Sum_probs=63.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChH
Q 038401 409 LFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFN 487 (542)
Q Consensus 409 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~ 487 (542)
...+.|+.++|++....-++.. +-|...-..++..++-.|+|+.|.+-++.+.+.+ |...... +..-+.++ +
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~---p~~~~~a~~yr~lI~a---E 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF---PEYLPGASQLRHLVKA---A 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHH---H
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---chhhHHHHHHHHHHHH---H
Confidence 3456677788877777777643 2255555667777777888888888888777765 3332221 22222222 2
Q ss_pred HHH-HHHHH--HhcCCCCCchhHHHHHHH--HHHhhcchhhHHHHHHHHHhc
Q 038401 488 MLE-SLFER--LDSDSNINKKELHHVVAG--IYERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 488 ~A~-~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~ 534 (542)
..+ ++|.- .+.-++. +......+.. .....|+.++|.++-.++.+.
T Consensus 79 ~~R~~vfaG~~~P~~~g~-~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGE-NEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHTTSCCCEECCCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCC-CHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222 22222 2222222 2222333333 334557777777777776543
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.71 E-value=7.7 Score=28.53 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCccHhHHHHHH
Q 038401 69 MFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIFSRLKSSGIVPDLVAYNTMI 131 (542)
Q Consensus 69 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 131 (542)
+.-+..+-++.+...+..|++......+++|.+.+|+..|.++|+-++..- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 334455555555555666666666666666666666666666666665432 22334455444
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.45 E-value=8.8 Score=28.24 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038401 34 QWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIE 97 (542)
Q Consensus 34 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 97 (542)
+.=+..+-++.+...++-|++.+....+++|-+.+++..|.++|+-.... ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44466777778888888999999999999999999999999999988765 2333445666553
No 261
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=84.52 E-value=3.5 Score=31.32 Aligned_cols=52 Identities=23% Similarity=0.193 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcC-CCCCchhHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCC
Q 038401 487 NMLESLFERLDSD-SNINKKELHHVVAGIYERANRLNDASRIMNRMNKRRTFN 538 (542)
Q Consensus 487 ~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 538 (542)
+.+.++|+-|..+ -+...+..|...+..+...|++.+|.++|+.-..++..|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3366777775433 344456677777777777788888888877777777666
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.92 E-value=7.6 Score=31.09 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=47.4
Q ss_pred HHHHHHHhC-----CCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHH
Q 038401 421 EVFEKMRSA-----GYFPDSHI---IALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLES 491 (542)
Q Consensus 421 ~~~~~~~~~-----~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~ 491 (542)
.++++.... ...-|..- |...+..+ ..+...++..+|..|...+.-.-....|. .+..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 466666542 23345533 33333332 24446788888888888774444555555 7788888888888888
Q ss_pred HHHH-Hh
Q 038401 492 LFER-LD 497 (542)
Q Consensus 492 ~~~~-~~ 497 (542)
+++. +.
T Consensus 137 Vy~~GI~ 143 (202)
T 3esl_A 137 LLELGAE 143 (202)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888 44
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.99 E-value=30 Score=32.19 Aligned_cols=96 Identities=7% Similarity=0.153 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHc---CCCCchH-H
Q 038401 402 VFGCMIELFSRNKKYANVIEVFEKMRSA--GYFPD---SHIIALVLNSYGKLREFETADDLYSEMQEE---GCVFSDQ-V 472 (542)
Q Consensus 402 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-~ 472 (542)
....|...+...|++.+|..++..+... +..+. ...+...++.|...+++..|..++.++... ...+|+. .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456788899999999999999998743 32222 256667788999999999999999987531 2122322 2
Q ss_pred -HHH-HHHHHhccCChHHHHHHHHHHh
Q 038401 473 -HFQ-MLSLYGARKDFNMLESLFERLD 497 (542)
Q Consensus 473 -~~~-l~~~~~~~g~~~~A~~~~~~~~ 497 (542)
.+. .+..+...++|.+|.+.|..+-
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333 7788888999999987777753
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.25 E-value=9.4 Score=26.31 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=25.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 410 FSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 410 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
+...|+|++|..+.+.. ..||...|..+ +-.+.|..+++...+.++...+
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHHHHHhCC
Confidence 44556666665544433 23555555443 2345555555555555555444
No 265
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=79.71 E-value=6.9 Score=31.94 Aligned_cols=44 Identities=9% Similarity=0.301 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH
Q 038401 452 ETADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 452 ~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 495 (542)
+++..+|..|...+.-.-....|. .+..+...|++.+|.++++.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345556666665553333334444 55556666666666666665
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.38 E-value=31 Score=30.06 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHH
Q 038401 232 YNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATN----LMQEMQNRGIEPNAITYSTIIA 307 (542)
Q Consensus 232 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~l~~ 307 (542)
|.++..=|.+.+++++|++++..-. ..+.+.|+...|.. +++...+.+++++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344444555566666665543322 11233344433332 3444445566666666666665
Q ss_pred HHHhcCCHH-HHHHHHHHHHh----cC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038401 308 IWGKAGKLD-RAAMLFQKLRS----SG--VEIDPVLYQTMIVAYERVGLVAHAKRLLH 358 (542)
Q Consensus 308 ~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (542)
.+......+ .-.++.+.+++ .| ..-++.....+...|.+.|++.+|...|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 554322111 11223333321 11 23467778888888888888888877654
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.87 E-value=18 Score=29.01 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 413 NKKYANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 413 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
.+...++.++|..|...|+-- -+..|......+...|++++|.++|+..++.+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344567777777777665543 34566667777777777777777777777765
No 268
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=78.77 E-value=4.9 Score=31.02 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCCCchHHHHH-HHHHHhccCChHHHHHHHHH
Q 038401 454 ADDLYSEMQEEGCVFSDQVHFQ-MLSLYGARKDFNMLESLFER 495 (542)
Q Consensus 454 A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 495 (542)
+..+|..|...+.-.-....|. .+..+...|++.+|.++++.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~ 121 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQE 121 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444555544443223333333 44444455555555555554
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.15 E-value=25 Score=32.52 Aligned_cols=98 Identities=9% Similarity=-0.056 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCCHHHHH--
Q 038401 231 SYNTLLRVYGEAELFGEAIHLFRLMQRK--EIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQNR---GIEPNAITYS-- 303 (542)
Q Consensus 231 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~-- 303 (542)
+...+...|.+.|+++.|.+.+.++... +...-...+..+++.+...+++..+...+.+.... +-.|+....-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556677777777777777777777654 22333456666777777777777777777766432 2222222111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 038401 304 TIIAIWGKAGKLDRAAMLFQKLRSS 328 (542)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (542)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111233567788887777766543
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.00 E-value=17 Score=25.09 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHH--HHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 038401 34 QWELAHGLFDEMRQRGIAPDRYTYSTLI--TCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISI 111 (542)
Q Consensus 34 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 111 (542)
..++|..+-+-+...+ + .-...+| ..+...|++++|..+.+.+ +.||...|..|.. .+.|-.+++...
T Consensus 21 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 4566666666666553 2 2223333 2455677777776665443 3566666655543 356666666666
Q ss_pred HHHhHhCCCCccHhHH
Q 038401 112 FSRLKSSGIVPDLVAY 127 (542)
Q Consensus 112 ~~~~~~~~~~~~~~~~ 127 (542)
+..+..+| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 66666665 4444444
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.15 E-value=18 Score=25.00 Aligned_cols=84 Identities=23% Similarity=0.233 Sum_probs=50.1
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHhHHHHH--HHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 038401 33 KQWELAHGLFDEMRQRGIAPDRYTYSTLI--TCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAIS 110 (542)
Q Consensus 33 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 110 (542)
...++|..+-+-+...+ + .-...+| ..+...|++++|..+.+.+ +.||...|..|.. .+.|-.+++..
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 35667777776666653 2 2223333 3455677888777766554 3667777766543 35666677777
Q ss_pred HHHHhHhCCCCccHhHH
Q 038401 111 IFSRLKSSGIVPDLVAY 127 (542)
Q Consensus 111 ~~~~~~~~~~~~~~~~~ 127 (542)
.+..+..+| .|....|
T Consensus 91 rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCC-CHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 666766665 4444444
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.15 E-value=47 Score=28.97 Aligned_cols=26 Identities=23% Similarity=0.077 Sum_probs=17.3
Q ss_pred ChhHHHHHHHHHHhcCcHHHHHHHHH
Q 038401 228 SVVSYNTLLRVYGEAELFGEAIHLFR 253 (542)
Q Consensus 228 ~~~~~~~ll~~~~~~~~~~~a~~~~~ 253 (542)
++.....+...|.+.+++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 55566666777777777777766553
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=72.82 E-value=50 Score=29.11 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038401 331 EIDPVLYQTMIVAYERVGLVAHAKRLL 357 (542)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (542)
.-|+.....+...|.+.+++.+|..-|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 346677777777788888877777665
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.93 E-value=43 Score=26.86 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=25.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038401 398 KDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQE 463 (542)
Q Consensus 398 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 463 (542)
++..+-...+.++...|.. ++...+..+.+ .++...-...+.++.+.+. .++...+..+.+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3444444444455544443 23333333332 2444444444444444443 334444444443
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.31 E-value=70 Score=29.03 Aligned_cols=164 Identities=10% Similarity=0.035 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHhc-CCHHHHHHHHHHHHh----cCCC-CC
Q 038401 264 VVTYNTMIKIYGKSLEHEKATNLMQEMQNR-GIEPNA---ITYSTIIAIWGKA-GKLDRAAMLFQKLRS----SGVE-ID 333 (542)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~---~~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~~~-~~ 333 (542)
......|...|.+.|+.++..+++...... +..|-. .....++..+... +..+.-.++..+..+ ..-. ..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888899999999888888776432 112222 2345666666543 333433444443332 1100 01
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhcC--CCCCCHHHH-------HHHHHHhCCHHHHHHHHHHHHHcC--CCcCHHH
Q 038401 334 PVLYQTMIVAYERVGLVAHAKRLLHELRQ--PNTIPRETA-------ITILARAGRIEEATWVFRQAFDAG--EVKDISV 402 (542)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 402 (542)
..+-..++..|...|++.+|.+++..+.+ .....-..+ +..+...+++..+...+..+.... +.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 11222566677777777777766666543 111111111 344556677777777766665321 1122222
Q ss_pred HH----HHHHHHH-hcCCHHHHHHHHHHHH
Q 038401 403 FG----CMIELFS-RNKKYANVIEVFEKMR 427 (542)
Q Consensus 403 ~~----~l~~~~~-~~g~~~~A~~~~~~~~ 427 (542)
.. .-+..+. ..++|..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11 1122334 5667777766665554
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=67.45 E-value=69 Score=28.59 Aligned_cols=27 Identities=0% Similarity=0.122 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 038401 21 AYNVVLRNVLRAKQWELAHGLFDEMRQ 47 (542)
Q Consensus 21 ~~~~ll~~~~~~~~~~~A~~~~~~~~~ 47 (542)
....+|.-|...|+.++|...++++..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 345667777778888888888777643
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.50 E-value=29 Score=23.94 Aligned_cols=78 Identities=5% Similarity=-0.037 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 038401 209 MAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQ 288 (542)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (542)
..++|..+-+.+...+. ...+-.+-+..+...|++++|..+.+... .||...|.+|... +.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 34556666555555432 22222222334556666766665554333 4666666555432 5566666666665
Q ss_pred HHHHcC
Q 038401 289 EMQNRG 294 (542)
Q Consensus 289 ~~~~~~ 294 (542)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 665554
No 278
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.91 E-value=1.1e+02 Score=29.94 Aligned_cols=116 Identities=6% Similarity=-0.063 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhH----HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCcHHHH
Q 038401 173 HKFVEALSVFAEMNEVNCPLDLTTC----NIMIDVYGQLDMAKDADRLFWSMRKMGIDPSVVSYNTLLRVYGEAELFGEA 248 (542)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 248 (542)
.+.+.|...+....... ..+.... ..+.......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 36778888887775433 2232222 22232333444244555555554433 23333333444445567888888
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038401 249 IHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLMQEMQN 292 (542)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (542)
...|+.|..... ......--+..++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888887765321 1233344556677778888888888887764
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.50 E-value=27 Score=29.59 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHH---hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 038401 24 VVLRNVLRAKQWELAHGLFDEMRQRGIAPDRY---TYSTLITCFGKEGMFDSAISWLQQMEQDRVSG 87 (542)
Q Consensus 24 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 87 (542)
+.+...++.|+.+....++ +.|..++.. .-.+.+...+..|+.+ +++.+.+.|..+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~ 65 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADP 65 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCT
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCC
Confidence 3455566777776555444 444433321 1112333444566654 334444455443
No 280
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=64.29 E-value=33 Score=29.83 Aligned_cols=63 Identities=19% Similarity=0.102 Sum_probs=35.4
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhccCC--HHHHHHHHHHHHHCCC
Q 038401 162 YSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQLDM--AKDADRLFWSMRKMGI 225 (542)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 225 (542)
...++.-|...|+.++|...++++...... .......+..+.-+.++ .+...+++..+.+.|+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 356777888888888888888887421111 12223333344444322 3445566666665553
No 281
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=62.70 E-value=47 Score=25.72 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=19.5
Q ss_pred HHHHHHhhcchhhHHHHHHHHHhcCC
Q 038401 511 VAGIYERANRLNDASRIMNRMNKRRT 536 (542)
Q Consensus 511 l~~~~~~~g~~~~A~~~~~~~~~~~~ 536 (542)
.+.-|...|..++...+|...+++.+
T Consensus 214 aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 214 AARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHhcccchhHHHHHHHHHhcCC
Confidence 34566778888888888888877654
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.42 E-value=64 Score=25.82 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHHcC
Q 038401 333 DPVLYQTMIVAYERVG 348 (542)
Q Consensus 333 ~~~~~~~l~~~~~~~~ 348 (542)
+..+-...+.++.+.|
T Consensus 125 ~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIG 140 (211)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4444444444444443
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.11 E-value=62 Score=24.93 Aligned_cols=49 Identities=12% Similarity=0.231 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 417 ANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 417 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
+++.++|..|...|+-- -+..|......+...|++++|.++|+..++.+
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34667888888776644 34667777777788888888888888888876
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.77 E-value=84 Score=26.03 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHh
Q 038401 24 VVLRNVLRAKQWELAHGLFDEMRQ 47 (542)
Q Consensus 24 ~ll~~~~~~~~~~~A~~~~~~~~~ 47 (542)
--++.+....++++|..+++...+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345667777788888887776654
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.29 E-value=70 Score=26.10 Aligned_cols=86 Identities=13% Similarity=0.017 Sum_probs=40.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHh
Q 038401 26 LRNVLRAKQWELAHGLFDEMRQRGIAPDRYT--YSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVL--YSNLIELARK 101 (542)
Q Consensus 26 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 101 (542)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4445667787777777776666554443221 112233334455554 3334444444433211 1122333445
Q ss_pred cCCHHHHHHHHHHh
Q 038401 102 LSDYSKAISIFSRL 115 (542)
Q Consensus 102 ~~~~~~a~~~~~~~ 115 (542)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 56665555555443
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=54.57 E-value=1.2e+02 Score=27.10 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCC
Q 038401 338 QTMIVAYERVGLVAHAKRLLHELRQP 363 (542)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 363 (542)
..++.-|...|+.++|.+.++++..+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p 246 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVP 246 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCT
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCC
Confidence 34445555556666666666655543
No 287
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=51.50 E-value=83 Score=24.41 Aligned_cols=121 Identities=11% Similarity=-0.028 Sum_probs=72.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHhcCCCCCCHHHH---HHHHHHhCCHHHH
Q 038401 309 WGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIV-AYERVGLVAHAKRLLHELRQPNTIPRETA---ITILARAGRIEEA 384 (542)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A 384 (542)
+.+-.+++.+.-+-.-+... .| -|..++. .+.-.|++.+++-++.... +..+. .-++-+..++..|
T Consensus 12 s~kY~dYdt~~fLsa~L~~~--~~---eY~lL~~I~LyyngEY~R~Lf~L~~lN-----T~Ts~YYk~LCy~klKdYkkA 81 (242)
T 3kae_A 12 SIRYRDYETAIFLAACLLPC--KP---EYRMLMSIVLYLNGEYTRALFHLHKLN-----TCTSKYYESLCYKKKKDYKKA 81 (242)
T ss_dssp HHHTTCHHHHHHHHHHHC---------CTHHHHHHHHHHTTCHHHHHHHHHTCC-----BHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhcccccHHHHHHHHHccC--Ch---HHHhhhhhhhhhcchHhHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHHHH
Confidence 34556777665554444332 22 3333332 2445788888887776543 22222 2235577999999
Q ss_pred HHHHHHHHHcCCC--c--------------C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038401 385 TWVFRQAFDAGEV--K--------------D-ISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALV 441 (542)
Q Consensus 385 ~~~~~~~~~~~~~--~--------------~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 441 (542)
...++.+++..+. | | ...++.++..+.+.|+-++|+..+..--. ..|=-.+...+
T Consensus 82 ~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~--~~~lf~~vEnl 153 (242)
T 3kae_A 82 IKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG--KSFLFSPVENL 153 (242)
T ss_dssp HHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHH
T ss_pred HHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC--CccccchHHHH
Confidence 9999999854433 1 1 33567778888889999999999887665 33444444433
No 288
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=51.40 E-value=1.3e+02 Score=26.55 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHH
Q 038401 368 RETAITILARAGRIEEATWVF 388 (542)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~ 388 (542)
-..+...|.+.+++.+|...|
T Consensus 139 H~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 139 HHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHH
Confidence 345566677777777776655
No 289
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=49.62 E-value=94 Score=24.51 Aligned_cols=17 Identities=12% Similarity=-0.210 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHhcCC
Q 038401 399 DISVFGCMIELFSRNKK 415 (542)
Q Consensus 399 ~~~~~~~l~~~~~~~g~ 415 (542)
+..+-...+.++...++
T Consensus 120 ~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333344444444443
No 290
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=49.22 E-value=2e+02 Score=28.26 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=14.2
Q ss_pred HhhcchhhHHHHHHHH
Q 038401 516 ERANRLNDASRIMNRM 531 (542)
Q Consensus 516 ~~~g~~~~A~~~~~~~ 531 (542)
...|+|++|++.+++.
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 7899999999988884
No 291
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.57 E-value=61 Score=27.30 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=5.5
Q ss_pred HcCCHHHHHHHHH
Q 038401 346 RVGLVAHAKRLLH 358 (542)
Q Consensus 346 ~~~~~~~a~~~~~ 358 (542)
..|+.+-+..+++
T Consensus 228 ~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 228 EKKHLGLVQRLLE 240 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 3444444444443
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.37 E-value=68 Score=30.30 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchH--HHHH--HHHHHhccCChHHHHHHHHHH
Q 038401 436 HIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQ--VHFQ--MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~--l~~~~~~~g~~~~A~~~~~~~ 496 (542)
..++.+++.|...+.++.|..+..+..--....++. ..|. ++.++.-.++|.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 567777778888888888888877774211001221 2333 567777788888887777774
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.26 E-value=87 Score=23.73 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 417 ANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 417 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
+++.++|..|...|+-- -+..|......+...|++++|.++|+..++.+
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33677777777765543 34566666677777777777777777777765
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.81 E-value=56 Score=30.83 Aligned_cols=66 Identities=9% Similarity=0.087 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH--HHH-HHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 400 ISVFGCMIELFSRNKKYANVIEVFEKMRSA-GYFPDS--HII-ALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 400 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
...+|.+++.|...+.++.|..+..+..-- ...++. ..| -.+++.+.-.+++.+|.+.+..+.+.-
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 678999999999999999999999988420 001122 222 235666778899999999999998865
No 295
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.79 E-value=1.2e+02 Score=24.45 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=11.6
Q ss_pred HHHhccCChHHHHHHHHHHh
Q 038401 478 SLYGARKDFNMLESLFERLD 497 (542)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~ 497 (542)
.+|.+.|.+++|.+.+++..
T Consensus 122 ~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHhcchHHHHHHHHHHh
Confidence 34555666666666666643
No 296
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.24 E-value=1.1e+02 Score=23.55 Aligned_cols=52 Identities=10% Similarity=-0.014 Sum_probs=31.2
Q ss_pred HhcCHHHHHHHHHHHHhCCCCC--CHHhHHHHHH-H-----HhccCCHHHHHHHHHHHHh
Q 038401 31 RAKQWELAHGLFDEMRQRGIAP--DRYTYSTLIT-C-----FGKEGMFDSAISWLQQMEQ 82 (542)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 82 (542)
..|++-+|.++|+..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777776554444 4445666665 2 2346677777766666544
No 297
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=42.51 E-value=2.1e+02 Score=26.54 Aligned_cols=141 Identities=8% Similarity=0.048 Sum_probs=90.3
Q ss_pred hCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 038401 378 AGRIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDL 457 (542)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 457 (542)
..+.+-|.++.. +.|.+--...|..-.+.+...|++++|.++--...+ |+--+..|.+.+-.+=...|+..--+.+
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 355555544433 334444444566666777888999998887655543 4445677776665555566777778888
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhhcchhhHHHHHHHH
Q 038401 458 YSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 531 (542)
|..+.+.+. ....+...+++.-..+|+.+-..+++.+=+.... ..|+++. +..+..-|+.+|.+.
T Consensus 418 F~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~S-------EeLGDlv-k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 418 FGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLKEDKLECS-------EELGDLV-KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCC-------HHHHHHH-HHHCSHHHHHHHHHH
T ss_pred HHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHhcCCcccc-------HHhHhhh-hhcCHHHHHHHHHHc
Confidence 888888873 2445555588888888888888888876443322 2455555 444667777777764
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.53 E-value=51 Score=26.86 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=8.0
Q ss_pred HHHhcCHHHHHHHHH
Q 038401 29 VLRAKQWELAHGLFD 43 (542)
Q Consensus 29 ~~~~~~~~~A~~~~~ 43 (542)
.++.|+.+....+++
T Consensus 16 A~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 16 ATQYGIYERCRELVE 30 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCChHHHHHHHH
Confidence 456667655544443
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.52 E-value=56 Score=26.69 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038401 417 ANVIEVFEKMRSAGYFP-DSHIIALVLNSYGKLREFETADDLYSEMQEEG 465 (542)
Q Consensus 417 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 465 (542)
+++..+|..|...|+-- -+..|......+...|++++|..+|+..++.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45556676666665433 23556666666666777777777777766655
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.85 E-value=1.2e+02 Score=31.58 Aligned_cols=47 Identities=6% Similarity=-0.060 Sum_probs=26.4
Q ss_pred HHH-HHHHHhccCChHHHHHHHHHHhcCCCCC----chhHHHHHHHHHHhhc
Q 038401 473 HFQ-MLSLYGARKDFNMLESLFERLDSDSNIN----KKELHHVVAGIYERAN 519 (542)
Q Consensus 473 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g 519 (542)
+|. ++.++.+.+.++.++++.+.....-..+ +.+.|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 444 7777777777777777777632211111 1245666666655544
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.89 E-value=1e+02 Score=26.28 Aligned_cols=6 Identities=0% Similarity=0.019 Sum_probs=2.5
Q ss_pred ccCCHH
Q 038401 66 KEGMFD 71 (542)
Q Consensus 66 ~~g~~~ 71 (542)
..|+.+
T Consensus 40 ~~g~~~ 45 (285)
T 3kea_A 40 ADNNVR 45 (285)
T ss_dssp HTTCHH
T ss_pred HcCCHH
Confidence 344443
No 302
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=39.36 E-value=1.9e+02 Score=25.12 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHH----hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 038401 23 NVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRY----TYSTLITCFGKEGMFDSAISWLQQMEQDRVSG 87 (542)
Q Consensus 23 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 87 (542)
++.+...++.|+.+-+..+++ .|..++.. -++.| ...+..|+.+ +.+.+++.|..+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpL-h~A~~~g~~~----iv~~Ll~~ga~~ 85 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPL-HNAVQMSRED----IVELLLRHGADP 85 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHH-HHHHHTTCHH----HHHHHHHTTCCT
T ss_pred ChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHH-HHHHHcCCHH----HHHHHHHcCCch
Confidence 344555567888876665554 45544422 12333 3334566654 344445555443
No 303
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.15 E-value=2.4e+02 Score=26.14 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=35.4
Q ss_pred hcCCHHHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCc-----HHHHHHHHHHHHHcCC
Q 038401 101 KLSDYSKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKL-----FKEARLLIEEMREQGV 155 (542)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~g~ 155 (542)
+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|. ...|...++....-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 457888888888888888866655555555555444443 4455666666666664
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.30 E-value=1.7e+02 Score=24.19 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=38.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhC--CCCc----cHhHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038401 96 IELARKLSDYSKAISIFSRLKSS--GIVP----DLVAYNTMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLY 169 (542)
Q Consensus 96 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 169 (542)
+..+....++++|..++++..+. ++++ ........+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 34455566666666666554421 1111 111112222222222233333334444422 33444455555666
Q ss_pred HHCCChHHHHHHHHHH
Q 038401 170 VENHKFVEALSVFAEM 185 (542)
Q Consensus 170 ~~~g~~~~a~~~~~~~ 185 (542)
.+.|+.++|.++|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 6667766666666544
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.81 E-value=1e+02 Score=23.06 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=32.6
Q ss_pred HHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 038401 44 EMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSD 104 (542)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 104 (542)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.++..+..|.-..+..+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345556654443 233344444444555666677776666555555555555566666554
No 306
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.36 E-value=1.4e+02 Score=25.34 Aligned_cols=145 Identities=6% Similarity=-0.042 Sum_probs=66.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhc
Q 038401 25 VLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVL--YSNLIELARKL 102 (542)
Q Consensus 25 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 102 (542)
.+...++.|+.+-+..+++ .|..++...-.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 3445566788766555544 44433332222344455667776544 33444554443211 11233344566
Q ss_pred CCHHHHHHHHHHhHhCCCCccH---hHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCChHHH
Q 038401 103 SDYSKAISIFSRLKSSGIVPDL---VAYNTMINVFGKAKLFKEARLLIEEMREQGVKP-DTVSYSTLLNLYVENHKFVEA 178 (542)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a 178 (542)
|+.+-+..+++. |..++. .-+.+.+...+..|+.+ +++.+.+.|..+ +...-.+.+...+..|+.+-+
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 776655555444 323322 11123344445556654 334444444322 110223334444566766655
Q ss_pred HHHHHHH
Q 038401 179 LSVFAEM 185 (542)
Q Consensus 179 ~~~~~~~ 185 (542)
.-+++.-
T Consensus 178 ~~Ll~~g 184 (285)
T 3kea_A 178 ILLLDYM 184 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 5555443
No 307
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=37.10 E-value=38 Score=22.16 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=12.1
Q ss_pred HHHHHHHHhhcchhhHHHHHHHH
Q 038401 509 HVVAGIYERANRLNDASRIMNRM 531 (542)
Q Consensus 509 ~~l~~~~~~~g~~~~A~~~~~~~ 531 (542)
..+++=|+..|+|+.|+.+|+..
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~ 38 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGV 38 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHH
Confidence 34455555555555555555543
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.75 E-value=38 Score=26.10 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=48.2
Q ss_pred HHHHHHHH-HHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHH
Q 038401 36 ELAHGLFD-EMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQD--RVSGDLVLYSNLIELARKLSDYS 106 (542)
Q Consensus 36 ~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 106 (542)
+.+.+-+. .+.+.|.+++.. -..++..+...+..-.|.++++.+.+. ++..+..|.-.-+..+...|-..
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44444443 445678876553 456667777777788899999999887 66777777666777788877543
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.08 E-value=1.5e+02 Score=22.50 Aligned_cols=64 Identities=13% Similarity=0.251 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCC--HHHHHHHHHHHHhCCCC
Q 038401 22 YNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGM--FDSAISWLQQMEQDRVS 86 (542)
Q Consensus 22 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 86 (542)
.+.++.-|...|+.++|...++++...... ...+...+..++-+.++ .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 566788888889999999988887532111 22334444445554322 34556677777666544
No 310
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.99 E-value=86 Score=23.46 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=22.0
Q ss_pred hCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHh
Q 038401 12 EARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFG 65 (542)
Q Consensus 12 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 65 (542)
+.|+.++..=. .++..+...+ .-.|.++++.+.+.+...+..|.-..+..+.
T Consensus 12 ~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~ 63 (145)
T 3eyy_A 12 QRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLE 63 (145)
T ss_dssp TTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHH
T ss_pred HcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Confidence 44444444322 2333333333 4455555555555444444444333333333
No 311
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=33.64 E-value=51 Score=26.16 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=14.8
Q ss_pred HHHHhccCChHHHHHHHHHHh
Q 038401 477 LSLYGARKDFNMLESLFERLD 497 (542)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~ 497 (542)
+.+|.+.|.+++|.++++++.
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHccchHHHHHHHHHHh
Confidence 456777777777777777743
No 312
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.37 E-value=67 Score=26.10 Aligned_cols=17 Identities=6% Similarity=-0.117 Sum_probs=8.2
Q ss_pred HHHHHhcCCHHHHHHHH
Q 038401 96 IELARKLSDYSKAISIF 112 (542)
Q Consensus 96 ~~~~~~~~~~~~a~~~~ 112 (542)
+...+..|+.+-+..++
T Consensus 46 L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 44445556655444333
No 313
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.25 E-value=1.6e+02 Score=22.13 Aligned_cols=59 Identities=8% Similarity=0.188 Sum_probs=30.2
Q ss_pred HHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 038401 44 EMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLS 103 (542)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (542)
.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.++..+..|.-..+..+...|
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345566654332 33444444445556666777777766655555554444444444444
No 314
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=31.97 E-value=95 Score=19.40 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC
Q 038401 21 AYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEG 68 (542)
Q Consensus 21 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 68 (542)
.++.++..+++..-.++++-.++++.+.|.- +...|-.-++.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 4566777777777788888888888887743 6666766666665543
No 315
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.72 E-value=1.9e+02 Score=22.59 Aligned_cols=92 Identities=20% Similarity=0.141 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 038401 332 IDPVLYQTMIVAYERVGLVAHAKRLLHELRQPNTIPRETAITILARAGRIEEATWVFRQAFDAGEVKDISVFGCMIELFS 411 (542)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 411 (542)
++..+-...+.++.+.++.+....+...+..+++......+.++.+.+.. .+...+..+.+ .++..+-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444445555555555443333333333333333333344444444442 23333333333 244555555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 038401 412 RNKKYANVIEVFEKMRS 428 (542)
Q Consensus 412 ~~g~~~~A~~~~~~~~~ 428 (542)
..|. .++...+..+.+
T Consensus 164 ~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 164 EIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 5554 334445555443
No 316
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=30.48 E-value=1.9e+02 Score=22.50 Aligned_cols=119 Identities=9% Similarity=0.054 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 038401 380 RIEEATWVFRQAFDAGEVKDISVFGCMIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYS 459 (542)
Q Consensus 380 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 459 (542)
..+....++..+.+.|...|...-.+++......|.+. ...+-.++...|+.++ +....+..+......+.|..+++
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHH
Confidence 34566778888888888777776667777666554332 3456667778887533 33333322211223456777777
Q ss_pred HHHHcCCCCchHHHHH-HHHHHhccCC-hHHHHHHHHHHhcCCC
Q 038401 460 EMQEEGCVFSDQVHFQ-MLSLYGARKD-FNMLESLFERLDSDSN 501 (542)
Q Consensus 460 ~~~~~~~~~~~~~~~~-l~~~~~~~g~-~~~A~~~~~~~~~~~~ 501 (542)
+-.......+...... +...+.+.|- ++.+..+++.+...++
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~~~ 168 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDLIFD 168 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC--
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCCCC
Confidence 6544322223333333 6777777775 6666788888766554
No 317
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.88 E-value=1.8e+02 Score=21.87 Aligned_cols=55 Identities=4% Similarity=0.192 Sum_probs=23.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 038401 150 MREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYG 205 (542)
Q Consensus 150 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 205 (542)
+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+.
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 72 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLE 72 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 3444444322 223344444444445555555555555443344444433333333
No 318
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=29.85 E-value=83 Score=21.27 Aligned_cols=21 Identities=10% Similarity=-0.080 Sum_probs=13.5
Q ss_pred HHHHHhccCChHHHHHHHHHH
Q 038401 476 MLSLYGARKDFNMLESLFERL 496 (542)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~ 496 (542)
.+..+.+.|+|++|++..++.
T Consensus 21 rAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 556666677777776666543
No 319
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.24 E-value=1.2e+02 Score=23.82 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=6.4
Q ss_pred HHHHHHHHHCCCCC
Q 038401 214 DRLFWSMRKMGIDP 227 (542)
Q Consensus 214 ~~~~~~~~~~~~~~ 227 (542)
.++.+.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 34444445554443
No 320
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.50 E-value=2.1e+02 Score=23.04 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=13.1
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCC
Q 038401 63 CFGKEGMFDSAISWLQQMEQDRVS 86 (542)
Q Consensus 63 ~~~~~g~~~~a~~~~~~~~~~~~~ 86 (542)
..+..|+.+....+++.+.+.|..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 334556666666666655554433
No 321
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.25 E-value=1.7e+02 Score=21.26 Aligned_cols=65 Identities=12% Similarity=0.242 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCC--HHHHHHHHHHHHhCCCCC
Q 038401 22 YNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGM--FDSAISWLQQMEQDRVSG 87 (542)
Q Consensus 22 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~ 87 (542)
...++.-|...|+.++|...++++...... ...+...+..++-+.++ .+....++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456788888889999999988887532111 22334444445555432 345667777777665443
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.80 E-value=1.8e+02 Score=21.31 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=36.3
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 038401 290 MQNRGIEPNAITYSTIIAIWGKAG-KLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGL 349 (542)
Q Consensus 290 ~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (542)
+.+.|+.++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 55667666553 233444555555 566788888888777666666666666666666553
No 323
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.66 E-value=1.5e+02 Score=21.76 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=29.4
Q ss_pred HHhCCCCCCHHhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 038401 45 MRQRGIAPDRYTYSTLITCFGKEG-MFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLS 103 (542)
Q Consensus 45 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (542)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.++..+..|.-.-+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44556554443 233444444444 45566667777666655555554444444444444
No 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.25 E-value=23 Score=29.74 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=13.8
Q ss_pred HHHHhcCHHHHHHHHHHHHhCCCCCC
Q 038401 28 NVLRAKQWELAHGLFDEMRQRGIAPD 53 (542)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~ 53 (542)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 33455666655555555555554444
No 325
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.19 E-value=1.3e+02 Score=19.46 Aligned_cols=58 Identities=16% Similarity=0.281 Sum_probs=29.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 038401 290 MQNRGIEPNAITYSTIIAIWGKAG-KLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVG 348 (542)
Q Consensus 290 ~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (542)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445555555433 23334444333 34455666666665554455555555555555544
No 326
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.00 E-value=2e+02 Score=23.03 Aligned_cols=86 Identities=8% Similarity=-0.036 Sum_probs=43.1
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCChHHHHHHHHHHHhcCCCC---------ChhhHHHH
Q 038401 132 NVFGKAKLFKEARLLIEEMREQGVKPDTVS--YSTLLNLYVENHKFVEALSVFAEMNEVNCPL---------DLTTCNIM 200 (542)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~l 200 (542)
...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+..+++.+.+.|..+ |....+ -
T Consensus 126 ~~A~~~~~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-p 200 (232)
T 2rfa_A 126 SFAACVGSEEIV----RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-P 200 (232)
T ss_dssp HHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-H
T ss_pred HHHHHcCCHHHH----HHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-H
Confidence 334455665433 33444454433211 1123444566777777767777776665422 222222 2
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 038401 201 IDVYGQLDMAKDADRLFWSMRK 222 (542)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~ 222 (542)
+...+..|+.+-+.-+++.-..
T Consensus 201 l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 201 FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCcc
Confidence 3444556777666666655443
No 327
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.92 E-value=2.2e+02 Score=22.10 Aligned_cols=91 Identities=9% Similarity=-0.014 Sum_probs=44.2
Q ss_pred HHHhcCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHh---HHHHHHHHHh-cC
Q 038401 29 VLRAKQWELAHGLFDEMRQRGIAPDR-YTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVL---YSNLIELARK-LS 103 (542)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~-~~ 103 (542)
.++.|+.+....++.. ++.... ..-.+.+...+..|+.+.-.++.+.+++.|..++... .+.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3566777776555542 221111 1112344445566666666667777777776655321 1222222211 22
Q ss_pred CHHHHHHHHHHhHhCCCCcc
Q 038401 104 DYSKAISIFSRLKSSGIVPD 123 (542)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~ 123 (542)
+.....++.+.+.+.|..++
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSS
T ss_pred chhhHHHHHHHHHHCCCCCC
Confidence 33344556666666665544
No 328
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.58 E-value=3.9e+02 Score=24.84 Aligned_cols=109 Identities=8% Similarity=0.013 Sum_probs=60.8
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 038401 33 KQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLSDYSKAISIF 112 (542)
Q Consensus 33 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 112 (542)
.+.+-|.++ ..+.|++--...|..-...+...|++++|.++-....+ |+-.+..|.+.+-..-..-|...-.+.+|
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 555555544 33344444455566667777778888888777655443 34446666655554444455666667777
Q ss_pred HHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHH
Q 038401 113 SRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLL 146 (542)
Q Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 146 (542)
..+.+.| ..+..----+++.-...|+.+-.++.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHH
Confidence 7776665 33433333344444455555444333
No 329
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.03 E-value=1.5e+02 Score=22.19 Aligned_cols=14 Identities=0% Similarity=0.102 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhcC
Q 038401 246 GEAIHLFRLMQRKE 259 (542)
Q Consensus 246 ~~a~~~~~~~~~~~ 259 (542)
-.|.++++.+.+.+
T Consensus 34 ~ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 34 ATPDDILGEVRKTA 47 (145)
T ss_dssp BCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhhC
Confidence 34444444444443
No 330
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.01 E-value=2.2e+02 Score=21.78 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHhC
Q 038401 68 GMFDSAISWLQQMEQD 83 (542)
Q Consensus 68 g~~~~a~~~~~~~~~~ 83 (542)
|++-+|-++++..-..
T Consensus 46 g~yfeaHEvLEe~W~~ 61 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYN 61 (161)
T ss_dssp TCHHHHHHHHHHHTTT
T ss_pred CCchHHHHHHHHHHHh
Confidence 5555555555554443
No 331
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.88 E-value=1.6e+02 Score=22.09 Aligned_cols=59 Identities=7% Similarity=0.009 Sum_probs=29.4
Q ss_pred HHHhCCCCCCHHhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 038401 44 EMRQRGIAPDRYTYSTLITCFGKEG-MFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLS 103 (542)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (542)
.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|.-..+..+...|
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 345556554443 233444444444 45556666666666555555544444444444444
No 332
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.51 E-value=1.9e+02 Score=21.65 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=3.9
Q ss_pred HHHHHHHHHh
Q 038401 248 AIHLFRLMQR 257 (542)
Q Consensus 248 a~~~~~~~~~ 257 (542)
|.++++.+.+
T Consensus 36 a~ei~~~l~~ 45 (150)
T 2w57_A 36 AEELYKKLID 45 (150)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 333
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.46 E-value=1.1e+02 Score=23.91 Aligned_cols=155 Identities=8% Similarity=0.009 Sum_probs=64.6
Q ss_pred HHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCCH
Q 038401 28 NVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQDRVSGDLVL--YSNLIELARKLSDY 105 (542)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 105 (542)
..+..|+.+....++..-...--..+..-++.+ ...+..|+.+ +++.+.+.|..++... -...+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 345677777776666432100001122222333 3334556654 4444445554443221 11233444566777
Q ss_pred HHHHHHHHHhHhCCCCccHhHHHHHHHHHhccCcHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHHHHCCC-hHHHHH
Q 038401 106 SKAISIFSRLKSSGIVPDLVAYNTMINVFGKAKLFKEARLLIEEMREQG-VKP---DTVSYSTLLNLYVENHK-FVEALS 180 (542)
Q Consensus 106 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~---~~~~~~~l~~~~~~~g~-~~~a~~ 180 (542)
+-+..+++.....--..+..-.+. +...+..|+.+-+..+++ .| ..+ +..-.+.+..+ +..++ ...-.+
T Consensus 86 ~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A-~~~~~~~~~~~~ 159 (201)
T 3hra_A 86 EILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEA-VGLREGNQLYQD 159 (201)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHH-HHSSCCSHHHHH
T ss_pred HHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHH-HHhccchhhHHH
Confidence 666555543211000111111122 233445666654444443 33 111 22222333333 33444 333355
Q ss_pred HHHHHHhcCCCCC
Q 038401 181 VFAEMNEVNCPLD 193 (542)
Q Consensus 181 ~~~~~~~~~~~~~ 193 (542)
+++.+.+.|..++
T Consensus 160 ~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 160 IVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHHCCCCCC
Confidence 6666666665544
No 334
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.41 E-value=80 Score=26.25 Aligned_cols=20 Identities=10% Similarity=-0.072 Sum_probs=10.0
Q ss_pred HhcCCHHHHHHHHHHhHhCC
Q 038401 100 RKLSDYSKAISIFSRLKSSG 119 (542)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~ 119 (542)
++.|+.+....+++.+.+.|
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 34455555555555444433
No 335
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=25.32 E-value=5e+02 Score=25.58 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=23.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038401 129 TMINVFGKAKLFKEARLLIEEMREQGVKPDTVSYSTLLNLYVE 171 (542)
Q Consensus 129 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 171 (542)
.+|-.|.++|++++|.++.++.... +.--...+...+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 4556778889999998888766532 11112345555566653
No 336
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.31 E-value=80 Score=23.09 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC
Q 038401 25 VLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEG 68 (542)
Q Consensus 25 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 68 (542)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44444445555566666666666554445555444444444444
No 337
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.31 E-value=2.5e+02 Score=24.71 Aligned_cols=64 Identities=8% Similarity=0.036 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCC
Q 038401 22 YNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEG-MFDSAISWLQQMEQDRVS 86 (542)
Q Consensus 22 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~ 86 (542)
...++.-|...|+.++|...++++...+.. ...+...+..++-+.. ..+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 567888899999999999988887532111 1122223333332221 233445666767665543
No 338
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.17 E-value=2.1e+02 Score=21.23 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=25.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhc
Q 038401 150 MREQGVKPDTVSYSTLLNLYVENHKFVEALSVFAEMNEVNCPLDLTTCNIMIDVYGQ 206 (542)
Q Consensus 150 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 206 (542)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|..-.+..+..
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 444555444322 23334444444455555666665554433444444433444333
No 339
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.07 E-value=52 Score=20.07 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038401 281 EKATNLMQEMQNRGIEPNAITYSTIIAIW 309 (542)
Q Consensus 281 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 309 (542)
++|.+.|.+|++..-.++..||...+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555554432233335555555554
No 340
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=23.84 E-value=98 Score=22.52 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=19.4
Q ss_pred chhhHHHHHHHHHhcCCCCCCCC
Q 038401 520 RLNDASRIMNRMNKRRTFNSSLV 542 (542)
Q Consensus 520 ~~~~A~~~~~~~~~~~~~~~~~~ 542 (542)
+++.-..++++|+..|-.|.+||
T Consensus 90 ~~~~i~~Lmq~mQ~~G~PP~eLv 112 (126)
T 2wl8_A 90 RFEMVLDLMQQLQDLGHPPKELA 112 (126)
T ss_dssp HHHHHHHHHHHHHHTCCCCGGGT
T ss_pred HHHHHHHHHHHHHHcCCCcHHHH
Confidence 45666789999999999999886
No 341
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.44 E-value=3.6e+02 Score=23.34 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 038401 303 STIIAIWGKAGKLDRAAMLFQKLRSSGVEIDPVLYQTMIVAYERVGL--VAHAKRLLHELRQPNTIPRETAITILAR 377 (542)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 377 (542)
..++.-|...|+.++|.+.++++....+. ...+...+..++.+.++ .+....++..+...+..+...+..++.+
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~ 245 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYER 245 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 44555566666666666666666422111 12333344444443322 3445556666655556665555555443
No 342
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=23.41 E-value=2.1e+02 Score=22.99 Aligned_cols=23 Identities=17% Similarity=0.201 Sum_probs=11.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhCCCCC
Q 038401 26 LRNVLRAKQWELAHGLFDEMRQRGIAP 52 (542)
Q Consensus 26 l~~~~~~~~~~~A~~~~~~~~~~~~~~ 52 (542)
+...++.|+.+-+ +.+.+.|..+
T Consensus 15 L~~A~~~g~~~~v----~~Ll~~g~~~ 37 (237)
T 3b7b_A 15 LHAAAEAGHVDIC----HMLVQAGANI 37 (237)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCT
T ss_pred HHHHHHcCcHHHH----HHHHHcCCCc
Confidence 4444566776543 3344445443
No 343
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=23.03 E-value=84 Score=19.15 Aligned_cols=22 Identities=5% Similarity=0.291 Sum_probs=14.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCch
Q 038401 449 REFETADDLYSEMQEEGCVFSD 470 (542)
Q Consensus 449 g~~~~A~~~~~~~~~~~~~~~~ 470 (542)
-+++.|...|..+...+.+||+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHH
Confidence 3667777777777666656554
No 344
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.56 E-value=4.3e+02 Score=23.85 Aligned_cols=20 Identities=5% Similarity=0.380 Sum_probs=11.3
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 038401 407 IELFSRNKKYANVIEVFEKM 426 (542)
Q Consensus 407 ~~~~~~~g~~~~A~~~~~~~ 426 (542)
+.+.....+.++|.+.++.+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~ 102 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDL 102 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHH
Confidence 34444555666666666655
No 345
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=22.52 E-value=1.6e+02 Score=22.46 Aligned_cols=81 Identities=14% Similarity=0.204 Sum_probs=45.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHHHHHHHhccCChHHHHH
Q 038401 412 RNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLES 491 (542)
Q Consensus 412 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 491 (542)
-..++..++..++..--..+ |...-| .|+.+|.+.....+-. +..+-.+........+.+.|++.-.|++++|+.
T Consensus 20 l~~dYs~VI~~L~~~~~~~L-p~~~kY-~LA~SYI~~e~Ls~eQ---KenIln~itlkSde~yL~YWIyiGRg~~~eAlD 94 (161)
T 2ynq_A 20 LQNKYSDVITTLEDYAPEDM-PYVIQY-ELASSYVMTESLTEEQ---RQTVSNNITLKTDEQYMLYWIYIGRSQSEEALE 94 (161)
T ss_dssp TTTCHHHHHHHHTTSCGGGS-CHHHHH-HHHHHHHHTSSSCHHH---HHHHHHTCCTTSCHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhhHHHHHHHHhcCChhhC-ChhHHH-HHHHHHHHccCCCHHH---HHHHHhhCCccCCHHHHHHHHHHcCCchHHHHH
Confidence 45677777766655433222 222333 4666776655443222 122222222233344557788888899999998
Q ss_pred HHHHHh
Q 038401 492 LFERLD 497 (542)
Q Consensus 492 ~~~~~~ 497 (542)
+.+.+.
T Consensus 95 iA~~L~ 100 (161)
T 2ynq_A 95 LARTIE 100 (161)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 888885
No 346
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.05 E-value=2.3e+02 Score=21.58 Aligned_cols=58 Identities=5% Similarity=0.125 Sum_probs=27.7
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCC
Q 038401 291 QNRGIEPNAITYSTIIAIWGKAGKLDRAAMLFQKLRSS--GVEIDPVLYQTMIVAYERVGL 349 (542)
Q Consensus 291 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 349 (542)
.+.|+.++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3445554432 233344444444555555565555554 444454444444455555553
No 347
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.53 E-value=1.3e+02 Score=27.86 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHH
Q 038401 507 LHHVVAGIYERANRLNDASRIMNRMN 532 (542)
Q Consensus 507 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 532 (542)
..+.+|+.+...++|.+|.+.+..+.
T Consensus 222 Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34445555555555555555554443
No 348
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.46 E-value=4.8e+02 Score=24.05 Aligned_cols=55 Identities=7% Similarity=-0.066 Sum_probs=33.8
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHcCC
Q 038401 241 EAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEH-----EKATNLMQEMQNRGI 295 (542)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~ 295 (542)
+.++.+.|+.++..|.+.|..|....-..+..+.-.-|.- ..|...++....-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 4567888888888888877666555555555555444432 345555555666663
No 349
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=21.20 E-value=45 Score=31.12 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=22.7
Q ss_pred chhHHHHHHHHHHhhcchhhHHHHHHHHHhc
Q 038401 504 KKELHHVVAGIYERANRLNDASRIMNRMNKR 534 (542)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 534 (542)
...++..++++|.-.|+|++|.+..+++...
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3466777788888888888888887776653
No 350
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.10 E-value=2.3e+02 Score=20.26 Aligned_cols=43 Identities=12% Similarity=-0.021 Sum_probs=26.9
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 038401 41 LFDEMRQRGIAPDRYTYSTLITCFGKEGMFDSAISWLQQMEQD 83 (542)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 83 (542)
+|+.+....+.|+...--.-+......++++.|..++..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555555556554443333344455678888888888887764
No 351
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.81 E-value=2.4e+02 Score=22.51 Aligned_cols=19 Identities=5% Similarity=-0.045 Sum_probs=12.6
Q ss_pred HHHHHHhcCHHHHHHHHHH
Q 038401 26 LRNVLRAKQWELAHGLFDE 44 (542)
Q Consensus 26 l~~~~~~~~~~~A~~~~~~ 44 (542)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4555667777777776654
No 352
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.73 E-value=71 Score=23.71 Aligned_cols=43 Identities=9% Similarity=0.021 Sum_probs=18.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 038401 61 ITCFGKEGMFDSAISWLQQMEQDRVSGDLVLYSNLIELARKLS 103 (542)
Q Consensus 61 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (542)
+..+...+..-.|.++++.+.+.++..+..|.-..+..+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333333334444445555444444444444444444444444
No 353
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.59 E-value=1.9e+02 Score=21.01 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=24.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 038401 406 MIELFSRNKKYANVIEVFEKMRSAGYFPDSHIIALVLNSYGKLR 449 (542)
Q Consensus 406 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 449 (542)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444455556667777777766554445555444445554444
Done!