BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038404
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 380 bits (975), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/288 (65%), Positives = 225/288 (78%), Gaps = 1/288 (0%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
M KAK VNKAL+ VQ++ P KIHE+MRYSLLAGGKRVRP+LCIA+CELVGGDES+AMP
Sbjct: 8 MLRKAKSVNKALEAAVQMKEPLKIHESMRYSLLAGGKRVRPMLCIAACELVGGDESTAMP 67
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
ACA+EMIHTMSL+HDDLPCMDNDD RRGKPTNH FGE A+LAGDALLS AFEHVAA
Sbjct: 68 AACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALLSFAFEHVAAA 127
Query: 121 STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEG-KDVSLNELENIHLHKTAKLLEA 179
+ P+R+VR + EL ++GSEGLVAG+++D+ SEG +V L+ LE IH HKTA LL+
Sbjct: 128 TKGAPPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIHHHKTAALLQG 187
Query: 180 AXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
+ EV ++RK+A CIGLLFQVVDDILDVTKSSKELGKTAGKDLV+DK T
Sbjct: 188 SVVLGAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDLVADKTT 247
Query: 240 YPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
YPKL+G+E +++FA L +A E+L +F RAAPL LA YIA R +
Sbjct: 248 YPKLIGVEKSKEFADRLNREAQEQLLHFHPHRAAPLIALANYIAYRDN 295
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 349 bits (896), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 182/291 (62%), Positives = 214/291 (73%), Gaps = 18/291 (6%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
+ KA VNKALD V LR P KIHEA RYSLLAGGKRVRPVLCIA+CELVGG+ES A P
Sbjct: 17 IIRKADSVNKALDSAVPLREPLKIHEAXRYSLLAGGKRVRPVLCIAACELVGGEESLAXP 76
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA-A 119
ACA+E IHT SL+HDDLPC DNDD RRGKPTNHKV+GED A+LAGDALLS AFEH+A A
Sbjct: 77 AACAVEXIHTXSLIHDDLPCXDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASA 136
Query: 120 KSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD---VSLNELENIHLHKTAKL 176
S+E+SP RVVRA+ EL A+G+EGLVAG+++DI SEG D V L L+ IHLHKTA L
Sbjct: 137 TSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAAL 196
Query: 177 LEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSD 236
LEA+ + E+ER+RK+ARCIGLLFQVVDDILDVTKSS
Sbjct: 197 LEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS-------------- 242
Query: 237 KATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
K TYPKL G+E +R+FA L +A ++L F+ + APL LA YIA+RQ+
Sbjct: 243 KLTYPKLXGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 293
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/288 (57%), Positives = 200/288 (69%), Gaps = 37/288 (12%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
+ KA VNKALD V LR P KIHEAMRYSLLAGGKRVRPVLCIA+CELVGG+ES AMP
Sbjct: 17 IIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMP 76
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA-A 119
ACA+EMIHTMSL+HDD V+GED A+LAGDALLS AFEH+A A
Sbjct: 77 AACAVEMIHTMSLIHDD------------------VYGEDVAVLAGDALLSFAFEHLASA 118
Query: 120 KSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEA 179
S+E+SP RVVRA+ EL A+G+EGLVAG+++DI +V L L+ IHLHKTA LLEA
Sbjct: 119 TSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDI----SNVGLEHLKFIHLHKTAALLEA 174
Query: 180 AXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
+ + E+ER+RK+ARCIGLLFQVVDDILDVT ++DK T
Sbjct: 175 SAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVT--------------IADKLT 220
Query: 240 YPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
YPKLMG+E +R+FA L +A ++L F+ + APL LA YIA+RQ+
Sbjct: 221 YPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 268
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 234 bits (597), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 179/290 (61%), Gaps = 8/290 (2%)
Query: 2 TSKAKRVNKALDETVQLRHPA-KIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
T RV++ L++ + PA ++H AMRYSL GGKR+RP+L AS +LVG S
Sbjct: 10 TYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDA 69
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
A ALE IH SL+HDDLP MDND+ RRGKPT H F E TAILAGDAL + AFE + +
Sbjct: 70 SAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFE-LLSN 128
Query: 121 STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAA 180
T P+ ++ I EL A G G++ G+++D+ SE K++SL ELE +H+HKT L++A+
Sbjct: 129 PTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKAS 188
Query: 181 XXXXXXXXXXNMIEVERVRK---YARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDK 237
++ E++ K YA IGL FQV DDI+D+T ++ LGKT D ++K
Sbjct: 189 --VRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANK 246
Query: 238 ATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
ATYPKL+G++ A+ L QA +++ F ++ PL LA YI R H
Sbjct: 247 ATYPKLLGLDGAKALVVRLHEQAIAQISEFG-DKSQPLTDLANYIIDRNH 295
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 161/264 (60%), Gaps = 3/264 (1%)
Query: 24 IHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDN 83
++++M YS+ GGKR+RP+L + S + D + A A+EMIHT SL+HDDLPCMDN
Sbjct: 62 LYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMDN 121
Query: 84 DDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSE 143
DD RRGKPTNHKVFGE A+LAGDALL+ A + + S E ++A + A GS+
Sbjct: 122 DDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLE-EGKSALKATKIIADAAGSD 180
Query: 144 GLVAGEIMDIDSEGK-DVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEVERVRKYA 202
G++ G+I+DI +E K ++SL EL+ +HL KT +L++A+ + +++++ +
Sbjct: 181 GMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFG 240
Query: 203 RCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATE 262
+GL FQ+ DDILDV ++K+LGK KD S+K Y + G+E +K ++ + E
Sbjct: 241 YKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIE 300
Query: 263 ELAYFEVARAAPLYHLAYYIASRQ 286
L+ + PL L + R+
Sbjct: 301 ILSSIK-GNTEPLKVLTMKLLERK 323
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 191 bits (485), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 157/273 (57%), Gaps = 14/273 (5%)
Query: 22 AKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCM 81
++ E+M YSL AGGKR+RPVL + + + + + M A ALEMIHT SL+HDDLP M
Sbjct: 28 TQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAM 87
Query: 82 DNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVG 141
DNDD+RRGK TNHKV+GE TAILAGDALL+ AFE +++ ++ + ++ + L A G
Sbjct: 88 DNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDD-RLTDEVKIKVLQRLSIASG 146
Query: 142 SEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEVERVRKY 201
G+V G+++D+ SEG+ + L LE IH KT LL A + E + Y
Sbjct: 147 HVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESY 206
Query: 202 ARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENA-------RKFAC 254
+ +G++FQ+ DD+LD +LGK G DL ++K+TY L+G + A R A
Sbjct: 207 SYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAV 266
Query: 255 DLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
D L Q E+ + L++ SR H
Sbjct: 267 DELTQIDEQFNTKHLLEIVDLFY------SRDH 293
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/291 (43%), Positives = 171/291 (58%), Gaps = 7/291 (2%)
Query: 1 MTSKAKRVNKALDETVQL--RHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSA 58
M S +RV +ALD + R P ++H+AMRYS+L GGKR+RP+L A+ + +G
Sbjct: 13 MRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLL 72
Query: 59 MPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA 118
ACA+E IH SL+HDDLP MD+DD RRGKPT HK + E TAILAGD L +LAF HV
Sbjct: 73 DGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAF-HVL 131
Query: 119 AK--STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKL 176
A+ S + + + I L A G G+V G+ +D+ S GK + L LEN+H+ KT L
Sbjct: 132 AQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGAL 191
Query: 177 LEAAXXXXXXXXXXNMIE-VERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVS 235
+ A+ E +R+ YA+CIGL FQ+ DDILD ++ LGKT GKD
Sbjct: 192 IRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDH 251
Query: 236 DKATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQ 286
+K YP L+G+ A++ A ++ A E LA F A L LA +I RQ
Sbjct: 252 NKPNYPALLGLSGAKEKAEEMHEAALESLAGFG-PEADLLRELARFIIQRQ 301
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 180 bits (456), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 159/267 (59%), Gaps = 3/267 (1%)
Query: 22 AKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCM 81
A+++EA RYS+ GGKRVRP+L A+CE +GG A ACA+E+IH SLVHDDLP
Sbjct: 37 ARLYEAXRYSVXNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAX 96
Query: 82 DNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKS-TEISPDRVVRAIAELGSAV 140
D+DD RRG+PT HK F E AILAGD L SLAF + + ++ S + +R + L A
Sbjct: 97 DDDDLRRGQPTTHKAFDEAXAILAGDGLQSLAFSALLDPALSDASAEIRLRXVTTLAQAA 156
Query: 141 GSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAX-XXXXXXXXXNMIEVERVR 199
G G V G+ +D+ S G + LE H HKT L+EA+ E++ ++
Sbjct: 157 GPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILGALASGRAEKGELKALQ 216
Query: 200 KYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQ 259
YA+ IGL FQV DDILDV + LGK G D+ DK TYP L+G+ A+++A +L Q
Sbjct: 217 TYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQ 276
Query: 260 ATEELAYFEVARAAPLYHLAYYIASRQ 286
A L F+ A A PL LA YI R+
Sbjct: 277 ALHALRPFDAA-AEPLRELARYIVERR 302
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 159/267 (59%), Gaps = 3/267 (1%)
Query: 22 AKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCM 81
A+++EA RYS+ GGKRVRP+L A+CE +GG A ACA+E+IH SLVHDDLP
Sbjct: 30 ARLYEAXRYSVXNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAX 89
Query: 82 DNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKS-TEISPDRVVRAIAELGSAV 140
D+DD RRG+PT HK F E AILAGD L SLAF + + ++ S + +R + L A
Sbjct: 90 DDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRXVTTLAQAA 149
Query: 141 GSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAX-XXXXXXXXXNMIEVERVR 199
G G V G+ +D+ S G + LE H HKT L+EA+ E++ ++
Sbjct: 150 GPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILGALASGRAEKGELKALQ 209
Query: 200 KYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQ 259
YA+ IGL FQV DDILDV + LGK G D+ DK TYP L+G+ A+++A +L Q
Sbjct: 210 TYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQ 269
Query: 260 ATEELAYFEVARAAPLYHLAYYIASRQ 286
A L F+ A A PL LA YI R+
Sbjct: 270 ALHALRPFDAA-AEPLRELARYIVERR 295
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 155/261 (59%), Gaps = 12/261 (4%)
Query: 1 MTSKAKRVNKALDETVQLRHPAK---IHEAMRYSLLAGGKRVRPVLCIASCELVGGDESS 57
++S +R N+ LD+ + R P + + EAMRY LL GGKR RP L + +++G + S
Sbjct: 13 LSSYQQRNNQQLDQWLN-RIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSD 71
Query: 58 AMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHV 117
A A+E IH SL+HDDLP MD+D+ RRGKPT H F E TAIL GDAL +LAF +
Sbjct: 72 LDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTIL 131
Query: 118 A----AKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKT 173
A + + E +++A+AE A G++G+ G+ +D+ +E + +SL ELE IH +KT
Sbjct: 132 AEGDLSAAGETQRVAMLQALAE---ASGAQGMCLGQALDLAAENRLISLEELETIHRNKT 188
Query: 174 AKLLEAAXXX-XXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKD 232
L+ A + + +YA +GL FQV DDILD+ ++ LGK G D
Sbjct: 189 GALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSD 248
Query: 233 LVSDKATYPKLMGIENARKFA 253
+K+TYP L+G+E A++ A
Sbjct: 249 QELNKSTYPALLGLEGAQQKA 269
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 134/237 (56%), Gaps = 6/237 (2%)
Query: 22 AKIHEAMRYSLLAGGKRVRPVLCIASCELVGGD---ESSAMPVACALEMIHTMSLVHDDL 78
A++ AM YS+LAGGKR+RP+L +A+ + +G E PV ALE++HT SL+HDDL
Sbjct: 34 AQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPV-MALELLHTYSLIHDDL 92
Query: 79 PCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGS 138
P MDND RRG+PTNH FG A LAGD LL+LAF+ + A T++ + L +
Sbjct: 93 PAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTA--TDLPATMQAALVQALAT 150
Query: 139 AVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEVERV 198
A G G+VAG+ DI SE ++ L++L +H KT LL A +
Sbjct: 151 AAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAY 210
Query: 199 RKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACD 255
++A GL FQ+ DDILDV S E+GK KD K TYP +G+ A + D
Sbjct: 211 LQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALID 267
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 162/287 (56%), Gaps = 8/287 (2%)
Query: 6 KRVNKALDETVQLR--HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVAC 63
K+ N+AL + + E M+Y L GGKR+RP L A+ + G ++ A
Sbjct: 36 KQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAA 95
Query: 64 ALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA-AKST 122
A+E IH SL+HDDLP MD+DD RRG PT H FGE AILAGDAL +LAF ++ A
Sbjct: 96 AVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDANMP 155
Query: 123 EISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAXX 182
E+S + I+EL SA G G+ G+ +D+D+EGK V L+ LE IH HKT L+ AA
Sbjct: 156 EVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVR 215
Query: 183 XXXXXXX-XNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYP 241
+ + KYA IGL FQV DDILDV + LGK G D K+TYP
Sbjct: 216 LGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYP 275
Query: 242 KLMGIENARKFACDLL---AQATEELAYFEVARAAPLYHLAYYIASR 285
L+G+E ARK A DL+ QA ++LA + +A L LA YI R
Sbjct: 276 ALLGLEQARKKARDLIDDARQALKQLAEQSLDTSA-LEALADYIIQR 321
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 170 bits (430), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 118/264 (44%), Positives = 150/264 (56%), Gaps = 4/264 (1%)
Query: 26 EAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDD 85
E M+Y L GGKR+RP L A+ + G ++ A A+E IH SL+HDDLP MD+DD
Sbjct: 34 ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDD 93
Query: 86 FRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA-AKSTEISPDRVVRAIAELGSAVGSEG 144
RRG PT H FGE AILAGDAL +LAF ++ A E+S + I+EL SA G G
Sbjct: 94 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAG 153
Query: 145 LVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXX-XNMIEVERVRKYAR 203
+ G+ +D+D+EGK V L+ LE IH HKT L+ AA + + KYA
Sbjct: 154 MCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAE 213
Query: 204 CIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEE 263
IGL FQV DDILDV + LGK G D K+TYP L+G+E ARK A DL+ A +
Sbjct: 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQS 273
Query: 264 LAYF--EVARAAPLYHLAYYIASR 285
L + + L LA YI R
Sbjct: 274 LKQLAEQSLDTSALEALADYIIQR 297
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 170 bits (430), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 118/264 (44%), Positives = 150/264 (56%), Gaps = 4/264 (1%)
Query: 26 EAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDD 85
E M+Y L GGKR+RP L A+ + G ++ A A+E IH SL+HDDLP MD+DD
Sbjct: 35 ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDD 94
Query: 86 FRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA-AKSTEISPDRVVRAIAELGSAVGSEG 144
RRG PT H FGE AILAGDAL +LAF ++ A E+S + I+EL SA G G
Sbjct: 95 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAG 154
Query: 145 LVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXX-XNMIEVERVRKYAR 203
+ G+ +D+D+EGK V L+ LE IH HKT L+ AA + + KYA
Sbjct: 155 MCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAE 214
Query: 204 CIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEE 263
IGL FQV DDILDV + LGK G D K+TYP L+G+E ARK A DL+ A +
Sbjct: 215 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQS 274
Query: 264 LAYF--EVARAAPLYHLAYYIASR 285
L + + L LA YI R
Sbjct: 275 LKQLAEQSLDTSALEALADYIIQR 298
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 147/240 (61%), Gaps = 3/240 (1%)
Query: 23 KIHEAMRYSLLAGGKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPCM 81
++ EAM YS+ AGGKR+RP+L + + + E+ VA +LEMIHT SL+HDDLP M
Sbjct: 37 RLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLPAM 96
Query: 82 DNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVG 141
D+DD RRGKPTNHKVFGE TAILAGD LL+ AF+ ++ +S V + +L A G
Sbjct: 97 DDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEK--VLLMQQLAKAAG 154
Query: 142 SEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEVERVRKY 201
++G+V+G++ DI+ E ++L EL +H KT L+E A + + ++
Sbjct: 155 NQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQF 214
Query: 202 ARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQAT 261
A GL FQ+ DD+LD T + +LGK G+D +K+TYP L+GI A+ LA+ +
Sbjct: 215 AHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGS 274
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 157 bits (396), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 140/250 (56%), Gaps = 7/250 (2%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
+ KAK +++ + E + + P ++EA R+ LAGGKRVRP + + S E VGGD A+
Sbjct: 11 IKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIY 70
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
A A+E+IH SLVHDD+ MD D+ RRGKPT H+++G + AILAGD L S AFE VA
Sbjct: 71 PAVAIELIHNYSLVHDDI--MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVA-- 126
Query: 121 STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD-VSLNELENIHLHKTAKLLEA 179
EI P++ R + + A S L G+ D++ E K V++ E + KT L EA
Sbjct: 127 RAEIPPEKKARVLEVIVKA--SNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEA 184
Query: 180 AXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
+ N ++ + + R +G+ FQ+ DD+LD+ K+LGK G D+ K T
Sbjct: 185 SAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKT 244
Query: 240 YPKLMGIENA 249
ENA
Sbjct: 245 LIVAHFFENA 254
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 141/254 (55%), Gaps = 14/254 (5%)
Query: 16 VQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASC-----ELVGGDESSAMPVACALEMIHT 70
V+ HP +EA+ L AGGK R L ++ EL+ + A+ VA ALE IHT
Sbjct: 20 VESFHPF-FNEALALXLKAGGKHFRAQLLLSVVQSNKPELL----NQALDVALALEFIHT 74
Query: 71 MSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVV 130
SL+HDDLP DN DFRRG PT HK + E TAIL GDAL + AF + + + +
Sbjct: 75 YSLIHDDLPAXDNADFRRGIPTLHKSYDETTAILVGDALNTEAF--LVLSHAHLKDEIKI 132
Query: 131 RAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXX 190
+ I L G G V G+ +D E K +SLNELE +H HKTA+L+ AA
Sbjct: 133 KLIKTLAFNAGLNGXVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKXGCEICEL 192
Query: 191 NMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENAR 250
N E ++ K +GL+FQ+ DDI+DVT S ++ GK D+ K ++ L+G+E A
Sbjct: 193 NNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDI--HKNSFVNLLGLEQAI 250
Query: 251 KFACDLLAQATEEL 264
K +LL + ++L
Sbjct: 251 KTKENLLNECEQDL 264
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 143/262 (54%), Gaps = 17/262 (6%)
Query: 1 MTSKAKRVNKALDETVQLRH-------------PA-KIHEAMRYSLLAGGKRVRPVLCIA 46
M+ + ++NK + + RH PA +I A+ Y+L +GGKR+RP+L
Sbjct: 1 MSLNSTQMNKQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYL 60
Query: 47 SCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAG 106
+ +L+ D+ +A ALE+ H SL+HDDLP MDNDD RRGKP+ HK F E TAIL G
Sbjct: 61 AGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVG 120
Query: 107 DALLSLAFEHVAAKSTEISPDRVVRAIAE-LGSAVGSEGLVAGEIMDIDSEGK-DVSLNE 164
D + +LA E + + + + P V AI + L +A G G+V+G+ +D+ K V+ +
Sbjct: 121 DGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQ 180
Query: 165 LENIHLHKTAKLLEAAXXXXXXXXXXNMIEVER-VRKYARCIGLLFQVVDDILDVTKSSK 223
L IHL KT KL+ A +++ +R Y + IGL+FQ+ DD LD+ ++
Sbjct: 181 LREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQ 240
Query: 224 ELGKTAGKDLVSDKATYPKLMG 245
LGK D + K T+ L
Sbjct: 241 ILGKGRSSDQANQKTTFATLFN 262
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 156/271 (57%), Gaps = 3/271 (1%)
Query: 17 QLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHD 76
++ P + EAMR+ +L GGKR+RP L I S L+GGD + + V ALE +H SLVHD
Sbjct: 66 EITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLHCYSLVHD 125
Query: 77 DLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAEL 136
DLP MD+DD RRG+PT H+ F E TAILAGD+LL+LAF+ +A+ ++ +R + L
Sbjct: 126 DLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISL 185
Query: 137 GSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEVE 196
A G G+ G+ +D+ +E K + + + KT LL A N E +
Sbjct: 186 ARAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQ 245
Query: 197 RVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDL 256
R+R + IGL FQ+ DD+LD+T + +GK GKD K T L G AR+ +
Sbjct: 246 RLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQ 305
Query: 257 LAQATEELA-YFEVARAAPLYHLAYYIASRQ 286
+A+A+E LA Y E +AA L A +IA R+
Sbjct: 306 VAEASELLAPYGE--KAAILIAAARFIAERK 334
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 135/240 (56%), Gaps = 8/240 (3%)
Query: 19 RHPA-KIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDD 77
R PA + +AM Y+ GGKR+R L I S + G + AMP A A+E +H SLVHDD
Sbjct: 25 RLPAGDLRDAMAYAA-QGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVHDD 83
Query: 78 LPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELG 137
+PCMDNDD RRG PT HK + + TA+LAGDAL +LAFE + +RV A
Sbjct: 84 MPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQ 143
Query: 138 SAVGSEGLVAGEIMDIDSEGKDV--SLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEV 195
++ G+EG+V G+ +DI +E V +L+E+ + KT L+ A +
Sbjct: 144 AS-GAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADR--- 199
Query: 196 ERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACD 255
+ YA +GL FQ+ DDILDV + + GK GKD + KAT+ L+G+ A+ A D
Sbjct: 200 GPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAAD 259
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 18/255 (7%)
Query: 20 HPAKIHEAMRYSLLAGGKRVRPVLCIAS-CELVG-----GDESSAMPVACALEMIHTMSL 73
HP + +A +L GGKR RP L +A C LVG ++ +A ++E +HT SL
Sbjct: 40 HPY-LEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSL 98
Query: 74 VHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAI 133
+HDDLPCMDN RR PT H + E TA+L GDAL + +FE ++ E +V I
Sbjct: 99 IHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLE--SHIIVELI 156
Query: 134 AELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMI 193
L + G +G++ G+ +D E ++L +L +H HKTAKL+ A+ I
Sbjct: 157 KILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASG---I 213
Query: 194 EVERVRKYARC----IGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENA 249
+ E + K+ + +GL FQV+DDI+DVT+ +E GKT D S K ++ L+G+E A
Sbjct: 214 KDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD--SAKNSFVNLLGLERA 271
Query: 250 RKFACDLLAQATEEL 264
+A L + +L
Sbjct: 272 NNYAQTLKTEVLNDL 286
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 18/255 (7%)
Query: 20 HPAKIHEAMRYSLLAGGKRVRPVLCIAS-CELVG-----GDESSAMPVACALEMIHTMSL 73
HP + +A +L GGKR RP L +A C LVG ++ +A ++E +HT SL
Sbjct: 33 HPY-LEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSL 91
Query: 74 VHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAI 133
+HDDLPCMDN RR PT H + E TA+L GDAL + +FE ++ E +V I
Sbjct: 92 IHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLE--SHIIVELI 149
Query: 134 AELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMI 193
L + G +G++ G+ +D E ++L +L +H HKTAKL+ A+ I
Sbjct: 150 KILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASG---I 206
Query: 194 EVERVRKYARC----IGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENA 249
+ E + K+ + +GL FQV+DDI+DVT+ +E GKT D S K ++ L+G+E A
Sbjct: 207 KDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD--SAKNSFVNLLGLERA 264
Query: 250 RKFACDLLAQATEEL 264
+A L + +L
Sbjct: 265 NNYAQTLKTEVLNDL 279
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 122/231 (52%), Gaps = 16/231 (6%)
Query: 25 HEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDND 84
EAM YS GG R+RP+L + E +G +E + VA A+E+ HT SL+HDDLP +DN
Sbjct: 35 EEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNA 94
Query: 85 DFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEG 144
DFRRG P+ H+ +GED A+LAGD L LAF ++ I + +E
Sbjct: 95 DFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISX----IGNSXIFEEFSETAYX----- 145
Query: 145 LVAGEIMDIDSEGK--DVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEVERVRKYA 202
L+ GE MD++ E + +VS +E ++ T L + + +
Sbjct: 146 LLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLL---G 202
Query: 203 RCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFA 253
G+ FQ+ DD+ D+ S +++GK GKD ++ T +GI+ AR+ A
Sbjct: 203 EXFGVAFQIYDDLXDILGSFEKVGKDLGKD--TEXVTLVXXVGIQXAREMA 251
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 24/220 (10%)
Query: 34 AGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTN 93
AGGKR+RP++ +A+ L G D +A A+E IHT +L+HDD +D RRGK
Sbjct: 63 AGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDD--VVDGSQLRRGKVAA 120
Query: 94 HKVFGEDTAILAGDALLSLAFEHV----AAKSTEISPDRVVRAIAELGSAVGSEGLVAGE 149
H ++G ++L GD L + AFE + + K+ EI R R IAE GE
Sbjct: 121 HLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILA-RASRVIAE------------GE 167
Query: 150 IMDIDSEGKDVSLNE---LENIHLHKTAKLLEAAXXXXXXXXXXNMIEVERVRKYARCIG 206
++ + D++L++ LE I KTA+L AA ++ + E +R Y +G
Sbjct: 168 VLQL-MRSHDLNLSQAVYLEIIQ-AKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLG 225
Query: 207 LLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGI 246
L FQ+ DD LD +++ LGK AG D KAT P L+ I
Sbjct: 226 LAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAI 265
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 120/259 (46%), Gaps = 13/259 (5%)
Query: 8 VNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEM 67
V K L E +Q I++A + L +GGKRVRP+ + S L + + A +LE+
Sbjct: 17 VEKRLYECIQ-SDSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLEL 75
Query: 68 IHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPD 127
+H SLVHDD +DN D RRG + H F +DTAI G LL+ A +++A +
Sbjct: 76 VHMASLVHDDY--IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQ 133
Query: 128 RVVRAIAELGSAVGSEGLVAGEIMDI-DSEGKDVSLNELENIHLHKTAKLLEAAXXXXXX 186
+ I E+ GE + D VS KTA L+EA+
Sbjct: 134 IFSKTILEV---------CFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGAL 184
Query: 187 XXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGI 246
+ ++++ CIG+ +Q++DDILD T LGK G D+ + TYP + I
Sbjct: 185 SSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAI 244
Query: 247 ENARKFACDLLAQATEELA 265
N ++ D L + L
Sbjct: 245 ANLKEQDDDKLEAVVKHLT 263
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 18/238 (7%)
Query: 8 VNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEM 67
VN + E + H +I E + + AGGKR+RP+L +A+ LVG + +A +E
Sbjct: 25 VNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEF 84
Query: 68 IHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPD 127
IHT +L+HDD +D RRG+PT + ++ +++L GD L + +F+ + T+
Sbjct: 85 IHTATLLHDD--VVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLM----TDTGNM 138
Query: 128 RVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLH----KTAKLLEAAXXX 183
RV+ +A SAV +E GE++ + + +L E+I+L KTA L AA
Sbjct: 139 RVMEILAN-ASAVIAE----GEVLQLTAAQ---NLATTEDIYLRVIRGKTAALFSAATEV 190
Query: 184 XXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYP 241
+V+ + Y +G+ FQ+VDD+LD S E+GK G D K T P
Sbjct: 191 GGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMP 248
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 23/239 (9%)
Query: 8 VNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEM 67
V KAL + + EA+ Y + GGKR+RP+L +A+ E V G A+P A +E+
Sbjct: 17 VEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVEL 76
Query: 68 IHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPD 127
IH SL++DD+ +D D RRG PT K FG++ AIL G A E + + P
Sbjct: 77 IHNYSLIYDDI--IDRGDVRRGLPTVRKAFGDNAAILVG-IWYREAIEEAVLDTPK--PT 131
Query: 128 RVVRAIAELGSAVGSEGLVAGEIMDI-------------DSEGKDVSLNELENIHLHKTA 174
+ +AE+ A+ GE +DI + ++V+L++ + KT
Sbjct: 132 LFAKEVAEVIKAIDE-----GERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTG 186
Query: 175 KLLEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDL 233
L+ AA + E + G+ FQ++DD+LD+ K+ GK GKD+
Sbjct: 187 ALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDI 245
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 101/208 (48%), Gaps = 9/208 (4%)
Query: 35 GGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GGK VRP L + S E+ G +P A A+E++H SL+HDDL MD D+ RR + T
Sbjct: 53 GGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDL--MDGDEQRRHRDTVW 110
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
KV G AIL GDAL +LA E + T + R R + + S L+ G+ DI
Sbjct: 111 KVHGPAQAILVGDALFALANEVLLELGT-VEAGRATRRLTK-----ASRSLIDGQAQDIS 164
Query: 155 SEGKD-VSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVD 213
E +D VS+ E + +KT LL A + + + KY +GL FQ VD
Sbjct: 165 YEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVD 224
Query: 214 DILDVTKSSKELGKTAGKDLVSDKATYP 241
D+L + GK DL K + P
Sbjct: 225 DLLGIWGDPDATGKQTWSDLRQRKKSLP 252
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 138/261 (52%), Gaps = 11/261 (4%)
Query: 1 MTSKAKRVNKALDETVQL---RHPAK-IHEAMRYSLLAGGKRVRPVLCIASCELVGGDES 56
++ + K V A++ R PA + +A Y+ GGKR+R L I S + G +
Sbjct: 3 LSERLKEVQDAVETAXAAAIGRLPAGDLRDAXAYA-AQGGKRLRAFLAIESAAIHGISXA 61
Query: 57 SAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEH 116
A P A A+E +H SLVHDD PC DNDD RRG PT HK + + TA+LAGDAL +LAFE
Sbjct: 62 QAXPAALAVEALHAYSLVHDDXPCXDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFEL 121
Query: 117 VAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDV--SLNELENIHLHKTA 174
+ +RV A ++ G+EG V G+ +DI +E V +L+E+ + KT
Sbjct: 122 CTDPVLGSAENRVALVAALAQAS-GAEGXVYGQALDIAAETAAVPLTLDEIIRLQAGKTG 180
Query: 175 KLLEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLV 234
L+ A + + YA +GL FQ+ DDILDV + + GK GKD
Sbjct: 181 ALISFAAQAGAILAGADR---GPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAE 237
Query: 235 SDKATYPKLMGIENARKFACD 255
+ KAT+ L+G+ A+ A D
Sbjct: 238 AHKATFVSLLGLAGAKSRAAD 258
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 17/226 (7%)
Query: 34 AGGKRVRPVLCIASCELVGGDE---SSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGK 90
AGGKR RP+ + + E G++ + + A +E+ H +L HDD MD RRG
Sbjct: 72 AGGKRFRPMFALLASEF--GEKPLSENVIKAAVVVEITHLATLYHDD--VMDEASMRRGV 127
Query: 91 PTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEI 150
P+ + + AILAGD LL+ H + +++ D V G LV G++
Sbjct: 128 PSANARWDNSVAILAGDILLA----HASGLMSQLGTDTVAHFAETFGE------LVTGQM 177
Query: 151 MDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQ 210
+ + N+ KT L+ +A ++ ++ + +G++FQ
Sbjct: 178 RETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQ 237
Query: 211 VVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDL 256
+VDDI+D+ + E GKT G DL T P L + +L
Sbjct: 238 IVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAEL 283
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 15/231 (6%)
Query: 35 GGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GK +RP+L + L G + + A +LE++HT SLVHDD+ +D RRG+ + +
Sbjct: 46 NGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVHDDV--VDESTERRGQLSVN 103
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
+F ++LAGD LL+ + H + + + ++R ++ LG + L GE++ +
Sbjct: 104 AIFNNKVSVLAGDYLLATSLVH----AEQTNNYEIIRLVSSLG-----QKLAEGELLQL- 153
Query: 155 SEGKDVSLNE--LENIHLHKTAKLLEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVV 212
S + S +E ++ KTA L A EV R IG+ FQ+
Sbjct: 154 SNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIK 213
Query: 213 DDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEE 263
DDI D SK++GK G D++ K T P L + + + +A +E
Sbjct: 214 DDIFDYF-DSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKE 263
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 97/189 (51%), Gaps = 14/189 (7%)
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAA- 119
+A EMIH SL+HDD+ +D+ D RRG + + V G ++LAGD LLS A +AA
Sbjct: 92 IAEITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAAL 149
Query: 120 KSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD-VSLNELENIHLHKTAKLLE 178
K+TE+ +A L +AV E LV GE M+I S + S++ +KTA L+
Sbjct: 150 KNTEV--------VALLATAV--EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLIS 199
Query: 179 AAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKA 238
+ +Y R +GL FQ++DDILD T +S LGK + D+
Sbjct: 200 NSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVI 259
Query: 239 TYPKLMGIE 247
T P L +E
Sbjct: 260 TAPILFAME 268
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 96/189 (50%), Gaps = 14/189 (7%)
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAA- 119
+A EMIH SL+HDD+ +D+ D RRG + + V G ++LAGD LLS A +AA
Sbjct: 92 IAEITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAAL 149
Query: 120 KSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDI-DSEGKDVSLNELENIHLHKTAKLLE 178
K+TE+ +A L +AV E LV GE M+I S S++ +KTA L+
Sbjct: 150 KNTEV--------VALLATAV--EHLVTGETMEITSSTAARYSMDYYMQKTYYKTASLIS 199
Query: 179 AAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKA 238
+ +Y R +GL FQ++DDILD T +S LGK + D+
Sbjct: 200 NSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVI 259
Query: 239 TYPKLMGIE 247
T P L +E
Sbjct: 260 TAPILFAME 268
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 20/217 (9%)
Query: 6 KRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACAL 65
+ V + E++ L + + + + +GGKR+RP++ + E+ G S ++ A A+
Sbjct: 12 RYVEAGIKESITLIEDPGLKKXVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAV 71
Query: 66 EMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALL--SLAFEHVAAKSTE 123
E H+ SL+HDDL +D RR P+ + FG A+L GD L+ S+AF
Sbjct: 72 EXXHSASLIHDDL--LDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAF--------- 120
Query: 124 ISP--DRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAX 181
ISP ++V++ + G GE++D+ E + N+ KTA L +
Sbjct: 121 ISPYGEKVIQDFGKAGXDXAE-----GEVLDLKLEDESFGENDYFKCIYKKTASLFAISA 175
Query: 182 XXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDV 218
ER + +G +Q+VDDIL+
Sbjct: 176 SIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEF 212
>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
pdb|3QKC|A Chain A, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
Length = 273
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 27/241 (11%)
Query: 8 VNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEM 67
+ L + + +R P + E M + A + LC+A+CELVGGD S AM A A+ +
Sbjct: 17 IESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHL 76
Query: 68 IHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK--STEIS 125
+H + H++LP D + HK F + +L GD ++ E +A T +
Sbjct: 77 MHVAAYTHENLPLTDGPMSK--SEIQHK-FDPNIELLTGDGIIPFGLELMARSMDPTRNN 133
Query: 126 PDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHL------HKTAKLLEA 179
PDR++RAI EL +GSEG+V G+ ++ LN+L ++ L K L
Sbjct: 134 PDRILRAIIELTRVMGSEGIVEGQY-------HELGLNQLNDLELIEYVCKKKEGTLHAC 186
Query: 180 AXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSS-----KELGKTAGKDLV 234
+ ++E++R++ GL V +L +S KEL + A K+L
Sbjct: 187 GAACGAILGGCDEDKIEKLRRF----GLYVGTVQGLLGKNRSGFEGRIKELKELAVKELE 242
Query: 235 S 235
S
Sbjct: 243 S 243
>pdb|3KRA|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
Length = 274
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 118/258 (45%), Gaps = 28/258 (10%)
Query: 8 VNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEM 67
+ + L +++ +R P + M + A LC+A+CELVGGD S AM A A+ +
Sbjct: 12 IERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHL 71
Query: 68 IHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK---STEI 124
+H + VH+ LP D HK +G + +L GD ++ FE +A +
Sbjct: 72 VHAAAYVHEHLPLTDGSRPVSKPAIQHK-YGPNVELLTGDGIVPFGFELLAGSVDPARTD 130
Query: 125 SPDRVVRAIAELGSAVGSEGLVAG-----EIMDIDSEGKDVSLNELENIHLHKTAKLLEA 179
PDR++R I E+ A G EG+++G EI+D + SL+ +E + K ++
Sbjct: 131 DPDRILRVIIEISRAGGPEGMISGLHREEEIVD-----GNTSLDFIEYVCKKKYGEMHAC 185
Query: 180 AXXXXXXXXXXNMIEVERVRKYARCIGLL---------FQVVD-DILDVTK--SSKELGK 227
E++++R + G L Q++D +I+ K + +ELG
Sbjct: 186 GAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKELALEELGG 245
Query: 228 TAGKD--LVSDKATYPKL 243
GK+ L+S P L
Sbjct: 246 FHGKNAELMSSLVAEPSL 263
>pdb|3OAB|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 264
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 38/258 (14%)
Query: 8 VNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEM 67
+ + L +++ +R P + M + A LC+A+CELVGGD S AM A A+ +
Sbjct: 12 IERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHL 71
Query: 68 IHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK---STEI 124
+H + VH+ LP P +G + +L GD ++ FE +A +
Sbjct: 72 VHAAAYVHEHLP-----------PAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTD 120
Query: 125 SPDRVVRAIAELGSAVGSEGLVAG-----EIMDIDSEGKDVSLNELENIHLHKTAKLLEA 179
PDR++R I E+ A G EG+++G EI+D + SL+ +E + K ++
Sbjct: 121 DPDRILRVIIEISRAGGPEGMISGLHREEEIVD-----GNTSLDFIEYVCKKKYGEMHAC 175
Query: 180 AXXXXXXXXXXNMIEVERVRKYARCIGLL---------FQVVD-DILDVTK--SSKELGK 227
E++++R + G L Q++D +I+ K + +ELG
Sbjct: 176 GAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKELALEELGG 235
Query: 228 TAGKD--LVSDKATYPKL 243
GK+ L+S P L
Sbjct: 236 FHGKNAELMSSLVAEPSL 253
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 21/227 (9%)
Query: 15 TVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPV-----ACALEMIH 69
TVQL + IH + L +GGK +RP L ++A P A A+E++H
Sbjct: 35 TVQLDN-QPIHHKILALLKSGGKLLRP----GYFYLFSTFGNAATPAQLQAGAAAIEILH 89
Query: 70 TMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRV 129
+L+HDD+ +D+ RRG T +G+ AI AGD + ++ F+ V +T+
Sbjct: 90 VGTLIHDDV--IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTD------ 141
Query: 130 VRAIAELGSAVGSEGLVAGEIMDID-SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXX 188
R++ + ++ GE+ +D + +D++L+ N KTA+L +
Sbjct: 142 -RSLIQ-NHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLA 199
Query: 189 XXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVS 235
++R R IG +Q++DDILD K K +DL S
Sbjct: 200 GAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRS 246
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 21/227 (9%)
Query: 15 TVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPV-----ACALEMIH 69
TVQL + IH + L +GGK +RP L ++A P A A+E++H
Sbjct: 28 TVQLDN-QPIHHKILALLKSGGKLLRP----GYFYLFSTFGNAATPAQLQAGAAAIEILH 82
Query: 70 TMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRV 129
+L+HDD+ +D+ RRG T +G+ AI AGD + ++ F+ V +T+
Sbjct: 83 VGTLIHDDV--IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTD------ 134
Query: 130 VRAIAELGSAVGSEGLVAGEIMDID-SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXX 188
R++ + ++ GE+ +D + +D++L+ N KTA+L +
Sbjct: 135 -RSLIQ-NHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLA 192
Query: 189 XXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVS 235
++R R IG +Q++DDILD K K +DL S
Sbjct: 193 GAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRS 239
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 14/190 (7%)
Query: 58 AMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHV 117
A+ + +EMI T SL+HDD +D RR P+ + +FG A++ GD S AF +
Sbjct: 59 ALNLCTIVEMIQTASLLHDD--VIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFEL 116
Query: 118 AAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLL 177
+ K E+ + A+ L E + GE + D + + I KTA +
Sbjct: 117 S-KMGELIAQALSNAVLRLSRG-EIEDVFVGECFNSDKQ-------KYWRILEDKTAHFI 167
Query: 178 EAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDK 237
EA+ + + + G+ FQ++DD+LD+T+ +K LGK D K
Sbjct: 168 EASLKSMAILLNK---DAKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGK 224
Query: 238 ATYPKLMGIE 247
T P L+ E
Sbjct: 225 TTLPYLLLYE 234
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 30/248 (12%)
Query: 28 MRYSLLAGGKRVRPVLCIASCELVGGDESSA------MPVACALEMIHTMSLVHDDLPCM 81
+R +L GGKR+RP+ A G ++S+ + A +LE I +L+HDD+ +
Sbjct: 54 LRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDI--I 111
Query: 82 DNDDFRRGKPTNHKV----------------FGEDTAILAGDALLSLAFEHVAAKSTEIS 125
D+ D RRG PT H+ FG +ILAGD L A + + + + +S
Sbjct: 112 DSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDXALVWAEDXL--QDSGLS 169
Query: 126 PDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK-DVSLNELENIHLHKTAKLLEAAXXXX 184
+ + R + +E ++ G+++DI E + S+ ++++ KTA A
Sbjct: 170 AEALART-RDAWRGXRTE-VIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHL 227
Query: 185 XXXXXXNMIE-VERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKL 243
+ ++ + Y IG+ FQ+ DD+L V GK AG D+ K T
Sbjct: 228 GASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLA 287
Query: 244 MGIENARK 251
+ ++ A K
Sbjct: 288 LALQRADK 295
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 22/216 (10%)
Query: 36 GKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GK +R L I S + G + A+ ALE++H SL+HDD +D FRRGK T +
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLYSLLHDD--VIDGARFRRGKETIN 97
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
++G+ A+ AGD +L AF V EI +++ RA + +G + E+++
Sbjct: 98 FMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFL---NVIGK--MSEAELIEQL 148
Query: 155 SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIE---VERVRKYARCIGLLFQV 211
S K ++ E I K+ L A ++E E + IG ++Q+
Sbjct: 149 SRYKPITKEEYLRIVEGKSGALFGLALQLPA------LLEGELGEDLYNLGVTIGTIYQM 202
Query: 212 VDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DDI+D K +GK DL + A++P + +E
Sbjct: 203 FDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 22/216 (10%)
Query: 36 GKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GK +R L I S + G + A+ ALE++H SL+HDD +D FRRGK T +
Sbjct: 40 GKMLRVRLSILSAKNRGVEIGEDAISSLAALELVHLASLLHDD--VIDGARFRRGKETIN 97
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
++G+ A+ AGD +L AF V EI +++ RA + +G + E+++
Sbjct: 98 FMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFL---NVIGK--MSEAELIEQL 148
Query: 155 SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIE---VERVRKYARCIGLLFQV 211
S K ++ E I K+ L A ++E E + IG ++Q+
Sbjct: 149 SRYKPITKEEYLRIVEGKSGALFGLALQLPA------LLEGELGEDLYNLGVTIGTIYQM 202
Query: 212 VDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DDI+D K +GK DL + A++P + +E
Sbjct: 203 FDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 18/214 (8%)
Query: 36 GKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GK +R L I S + G + A+ ALE++H SL+HDD +D FRRGK T +
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDD--VIDGARFRRGKETIN 97
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
++G+ A+ AGD +L AF V EI +++ RA + +G + E+++
Sbjct: 98 FMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFL---NVIGK--MSEAELIEQL 148
Query: 155 SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEV-ERVRKYARCIGLLFQVVD 213
S K ++ E I K+ L A E+ E + IG ++Q+ D
Sbjct: 149 SRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG----ELGEDLYNLGVTIGTIYQMFD 204
Query: 214 DILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DI+D K +GK DL + A++P + +E
Sbjct: 205 DIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 22/216 (10%)
Query: 36 GKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GK +R L I S + G + A+ ALE++H SL+HDD +D FRRGK T +
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDD--VIDGARFRRGKETIN 97
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
++G+ A+ AGD +L AF V EI +++ RA + +G + E+++
Sbjct: 98 FMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAAL---NVIGK--MSEAELIEQL 148
Query: 155 SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIE---VERVRKYARCIGLLFQV 211
S K ++ E I K+ L A ++E E + IG ++Q+
Sbjct: 149 SRYKPITKEEYLRIVEGKSGALFGLALQLPA------LLEGELGEDLYNLGVTIGTIYQM 202
Query: 212 VDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DDI+D K +GK DL + A++P + +E
Sbjct: 203 FDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 22/216 (10%)
Query: 36 GKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GK +R L I S + G + A+ ALE+ H SL+HDD +D FRRGK T +
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAISSLAALELYHLASLLHDD--VIDGARFRRGKETIN 97
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
++G+ A+ AGD +L AF V EI +++ RA + +G + E+++
Sbjct: 98 FMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFL---NVIGK--MSEAELIEQL 148
Query: 155 SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIE---VERVRKYARCIGLLFQV 211
S K ++ E I K+ L A ++E E + IG ++Q+
Sbjct: 149 SRYKPITKEEYLRIVEGKSGALFGLALQLPA------LLEGELGEDLYNLGVTIGTIYQM 202
Query: 212 VDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DDI+D K +GK DL + A++P + +E
Sbjct: 203 FDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 22/216 (10%)
Query: 36 GKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GK +R L I S + G + A+ ALE++H SL+HDD +D FRRGK T +
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDD--VIDGARFRRGKETIN 97
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
++G+ A+ AGD +L AF V EI ++ RA + +G + E+++
Sbjct: 98 FMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKARRAAL---NVIGK--MSEAELIEQL 148
Query: 155 SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIE---VERVRKYARCIGLLFQV 211
S K ++ E I K+ L A ++E E + IG ++Q+
Sbjct: 149 SRYKPITKEEYLRIVEGKSGALFGLALQLPA------LLEGELGEDLYNLGVTIGTIYQM 202
Query: 212 VDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DDI+D K +GK DL + A++P + +E
Sbjct: 203 FDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 22/216 (10%)
Query: 36 GKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GK +R L I S + G + +A+ ALE++H SL+HDD +D FRRGK T +
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEAAISSLAALELVHLASLLHDD--VIDGARFRRGKETIN 97
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
++G+ A+ AGD +L AF V + + I ++ A E+++
Sbjct: 98 FMYGDKAAVAAGDLVLVSAFHTVEEAGNNKARRAALNVIGKMSEA---------ELIEQL 148
Query: 155 SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIE---VERVRKYARCIGLLFQV 211
S K ++ E I K+ L A ++E E + IG ++Q+
Sbjct: 149 SRYKPITKEEYLRIVEGKSGALFGLALQLPA------LLEGELGEDLYNLGVTIGTIYQM 202
Query: 212 VDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DDI+D K +GK DL + A++P + +E
Sbjct: 203 FDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 18/214 (8%)
Query: 36 GKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GK +R L I S + G + A+ ALE++H L+HDD +D FRRGK T +
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLYFLLHDD--VIDGARFRRGKETIN 97
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
++G+ A+ AGD +L AF V EI +++ RA + +G + E+++
Sbjct: 98 FMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFL---NVIGK--MSEAELIEQL 148
Query: 155 SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEV-ERVRKYARCIGLLFQVVD 213
S K ++ E I K+ L A E+ E + IG ++Q+ D
Sbjct: 149 SRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG----ELGEDLYNLGVTIGTIYQMFD 204
Query: 214 DILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DI+D K +GK DL + A++P + +E
Sbjct: 205 DIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 20/198 (10%)
Query: 51 VGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALL 110
+G D S++ ALE++H SL+HDD +D FRRGK T + ++G+ A+ AGD +L
Sbjct: 59 IGEDAISSL---AALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVL 113
Query: 111 SLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHL 170
AF V EI +++ RA + +G + E+++ S K ++ E I
Sbjct: 114 VSAFHTV----EEIGNNKLRRAFL---NVIGK--MSEAELIEQLSRYKPITKEEYLRIVE 164
Query: 171 HKTAKLLEAAXXXXXXXXXXNMIEV-ERVRKYARCIGLLFQVVDDILDVTKSSKELGKTA 229
K+ L A E+ E + IG ++Q+ DDI+D K +GK
Sbjct: 165 GKSGALFGLALQLPALLEG----ELGEDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDG 219
Query: 230 GKDLVSDKATYPKLMGIE 247
DL + A++P + +E
Sbjct: 220 FLDLKNGVASFPLVTAME 237
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 24/200 (12%)
Query: 51 VGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALL 110
+G D S++ ALE++H SL+HDD +D FRRGK T + ++G+ A+ AGD +L
Sbjct: 59 IGEDAISSL---AALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVL 113
Query: 111 SLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHL 170
AF V EI +++ RA + +G + E+++ S K ++ E I
Sbjct: 114 VSAFHTV----EEIGNNKLRRAFL---NVIGK--MSEAELIEQLSRYKPITKEEYLRIVE 164
Query: 171 HKTAKLLEAAXXXXXXXXXXNMIE---VERVRKYARCIGLLFQVVDDILDVTKSSKELGK 227
K+ L A ++E E + IG ++Q+ DDI+D K +GK
Sbjct: 165 GKSGALFGLALQLPA------LLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGK 217
Query: 228 TAGKDLVSDKATYPKLMGIE 247
DL + A++P + +E
Sbjct: 218 DGFLDLKNGVASFPLVTAME 237
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 18/214 (8%)
Query: 36 GKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GK +R L I S + G + A+ ALE++H L+HDD +D FRRGK T +
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLAFLLHDD--VIDGARFRRGKETIN 97
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
++G+ A+ AGD +L AF V EI +++ RA + +G + E+++
Sbjct: 98 FMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFL---NVIGK--MSEAELIEQL 148
Query: 155 SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEV-ERVRKYARCIGLLFQVVD 213
S K ++ E I K+ L A E+ E + IG ++Q+ D
Sbjct: 149 SRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG----ELGEDLYNLGVTIGTIYQMFD 204
Query: 214 DILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DI+D K +GK DL + A++P + +E
Sbjct: 205 DIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 22/216 (10%)
Query: 36 GKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GK +R L I S + G + A+ ALE++H SL+HDD +D FRRGK T +
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDD--VIDGARFRRGKETIN 97
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
++G+ A+ AGD +L AF V + + I ++ A E+++
Sbjct: 98 FMYGDKAAVAAGDLVLVSAFHTVEEAGNNKARRAALNVIGKMSEA---------ELIEQL 148
Query: 155 SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIE---VERVRKYARCIGLLFQV 211
S K ++ E I K+ L A ++E E + IG ++Q+
Sbjct: 149 SRYKPITKEEYLRIVEGKSGALFGLALQLPA------LLEGELGEDLYNLGVTIGTIYQM 202
Query: 212 VDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DDI+D K +GK DL + A++P + +E
Sbjct: 203 FDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 18/214 (8%)
Query: 36 GKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNH 94
GK +R L I S + G + A+ ALE++H SL+HDD +D FRRGK T +
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDD--VIDGARFRRGKETIN 97
Query: 95 KVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID 154
++G+ A+ AGD +L A EH EI +++ RA + +G + E+++
Sbjct: 98 FMYGDKAAVAAGDLVLVSA-EHTV---EEIGNNKLRRAFL---NVIGK--MSEAELIEQL 148
Query: 155 SEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEV-ERVRKYARCIGLLFQVVD 213
S K ++ E I K+ L A E+ E + IG ++Q+ D
Sbjct: 149 SRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG----ELGEDLYNLGVTIGTIYQMFD 204
Query: 214 DILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DI+D K +GK DL + A++P + +E
Sbjct: 205 DIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Query: 36 GKRVRPVLCIASCE----LVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKP 91
GK +R L I S + +G D S++ ALE++H SL+HDD +D F RGK
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAISSL---AALELVHLASLLHDD--VIDGARFARGKE 94
Query: 92 TNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIM 151
T + ++G+ A+ AGD +L AF V EI +++ RA + +G + E++
Sbjct: 95 TINFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFL---NVIGK--MSEAELI 145
Query: 152 DIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIE---VERVRKYARCIGLL 208
+ S K ++ E I K+ L A ++E E + IG +
Sbjct: 146 EQLSRYKPITKEEYLRIVEGKSGALFGLALQLPA------LLEGELGEDLYNLGVTIGTI 199
Query: 209 FQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
+Q+ DDI+D K +GK DL + A++P + +E
Sbjct: 200 YQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Query: 36 GKRVRPVLCIASCE----LVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKP 91
GK +R L I S + +G D S++ ALE++H SL+HDD +D FR GK
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEDAISSL---AALELVHLASLLHDD--VIDGARFRAGKE 94
Query: 92 TNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIM 151
T + ++G+ A+ AGD +L AF V EI +++ RA + +G + E++
Sbjct: 95 TINFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFL---NVIGK--MSEAELI 145
Query: 152 DIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIE---VERVRKYARCIGLL 208
+ S K ++ E I K+ L A ++E E + IG +
Sbjct: 146 EQLSRYKPITKEEYLRIVEGKSGALFGLALQLPA------LLEGELGEDLYNLGVTIGTI 199
Query: 209 FQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
+Q+ DDI+D K +GK DL + A++P + +E
Sbjct: 200 YQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 88/228 (38%), Gaps = 27/228 (11%)
Query: 26 EAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDD 85
E +Y L GK+VR L A + E + EM+H SL+ DD+ DN
Sbjct: 15 EPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIE--DNSK 72
Query: 86 FRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRV---VRAIAELGSAVGS 142
RRG P H ++G + I + + + L E V T PD V R + EL G
Sbjct: 73 LRRGFPVAHSIYGIPSVINSANYVYFLGLEKVL---TLDHPDAVKLFTRQLLELHQGQG- 128
Query: 143 EGLVAGEIMDIDSEGKD----VSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEVERV 198
+D +D + E + + L KT L A E +
Sbjct: 129 ----------LDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYK----EDL 174
Query: 199 RKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGI 246
+ +GL FQ+ DD ++ K+ +DL K ++P + I
Sbjct: 175 KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI 222
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 21/200 (10%)
Query: 32 LLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKP 91
+L GKR R L + +GGD + A A+E++H+ SL DD+ +D D RRG
Sbjct: 45 ILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALDDI--VDLDATRRGDK 102
Query: 92 TNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIA-ELGSAVGSEGLVAGEI 150
V+G I + L+ A + T D + +I E ++VG+ +
Sbjct: 103 AAWVVYGNRKVIFITNYLIPTALRII---QTSYGDDALNTSIELEKDTSVGA-------L 152
Query: 151 MDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQ 210
D+ + EL+ L K + +L +A M++V + +G+++Q
Sbjct: 153 RDMYDNSDYIRTIELKTGSLFKLSTVL-SAYASKHYNTKQQMLDV------GKYLGIIYQ 205
Query: 211 VVDDILDV-TKSSKELGKTA 229
V+DD +D TK +E+ +A
Sbjct: 206 VIDDFVDYKTKKVEEIDGSA 225
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 1 MTSKAKRVNKALDETV--QLRHPAKIH-EAMRYSLLAGGKRVRPVLCIASCELVGGDESS 57
M + + +AL E + +L HP ++ + ++ GGK +R +L + S G +
Sbjct: 1 MVPAPEAIRQALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEA 60
Query: 58 AMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDAL 109
+ A ALE+ LVHDD+ D + RRG+P H++ A+ AGDA+
Sbjct: 61 GLEAATALELFQNWVLVHDDI--EDGSEERRGRPALHRLHPMPLALNAGDAM 110
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 21/156 (13%)
Query: 62 ACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKS 121
A +E++H +SL+ DD MD D RRG T ++G+ AI+A D L++ + + +
Sbjct: 74 AAIVELLHVVSLLQDD--VMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKM----A 127
Query: 122 TEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAX 181
+ D VV +A++ ++ L G+ +D++ E +D + KTA L+EAA
Sbjct: 128 VNLGAD-VVTYLADV-----AQRLSVGQALDLEGE-RDKAAE-------FKTAPLIEAAL 173
Query: 182 XXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILD 217
+ +E +K +G+L+Q DD D
Sbjct: 174 VMPLVILGRREL-IETAKKLGTKLGILYQYSDDYSD 208
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 19/199 (9%)
Query: 32 LLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKP 91
+L GKR R L + +GGD + A A+E++H+ SL D+ +D D RRG
Sbjct: 45 ILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALCDI--VDLDATRRGDK 102
Query: 92 TNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIM 151
V+G I + L+ A + T D + +I EL G +
Sbjct: 103 AAWVVYGNRKVIFITNYLIPTALRII---QTSYGDDALNTSI-ELWKDTS-----VGALR 153
Query: 152 DIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQV 211
D+ + EL+ L K + +L +A M++V + +G+++QV
Sbjct: 154 DMYDNSDYIRTIELKTGSLFKLSTVL-SAYASKHYNTKQQMLDV------GKYLGIIYQV 206
Query: 212 VDDILDV-TKSSKELGKTA 229
+DD +D TK +E+ +A
Sbjct: 207 IDDFVDYKTKKVEEIDGSA 225
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 75 HDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIA 134
HDD +D FRRGK T + ++G+ A+ AGD +L AF V EI +++ RA
Sbjct: 80 HDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFL 133
Query: 135 ELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIE 194
+ +G + E+++ S K ++ E I K+ L A ++E
Sbjct: 134 ---NVIGK--MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPA------LLE 182
Query: 195 ---VERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
E + IG ++Q+ DDI+D K +GK DL + A++P + +E
Sbjct: 183 GELGEDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAME 237
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 19/226 (8%)
Query: 24 IHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDN 83
I + + LL GK R L + ++ + V+ +E++H SL+ DD+ DN
Sbjct: 28 ISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDIE--DN 85
Query: 84 DDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTE--ISPDRVVRAIAELGSAVG 141
RRG+ T+H +FG + I + + A + V+ +T+ + + + EL +
Sbjct: 86 APLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHR 145
Query: 142 SEGL------VAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAXXXXXXXXXXNMIEV 195
+GL EI+ ++ +N+ + T +L+EA
Sbjct: 146 GQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGL-FRLTLRLMEALSPSSHHG-------- 196
Query: 196 ERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYP 241
+ + +G+++Q+ DD L++ K +D+ K ++P
Sbjct: 197 HSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFP 242
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 107/275 (38%), Gaps = 48/275 (17%)
Query: 11 ALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELV------GGDESSAMPVACA 64
+L+E ++ H +K ++ + GGK R +L I E V + A +A
Sbjct: 56 SLEEEIK-EHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWC 114
Query: 65 LEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSL------------ 112
+E++ LV DD+ MD + RR K + + +T D LL
Sbjct: 115 IEILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLR 172
Query: 113 ----------AFEHVAAKS-------TEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDS 155
F K+ T I D+ A E+ V + + ++DI+
Sbjct: 173 NESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREID--VNNINVPEQPVIDINM 230
Query: 156 EGKDVSLNELENIHLHKTAK---LLEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVV 212
++ +NI +HKTA L + + +++ + +G FQ+
Sbjct: 231 ----INFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIH 286
Query: 213 DDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DD LD+ S + GK G D+ ++K T+P + E
Sbjct: 287 DDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFE 320
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 107/275 (38%), Gaps = 48/275 (17%)
Query: 11 ALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELV------GGDESSAMPVACA 64
+L+E ++ H +K ++ + GGK R +L I E V + A +A
Sbjct: 55 SLEEEIK-EHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWC 113
Query: 65 LEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSL------------ 112
+E++ LV DD+ MD + RR K + + +T D LL
Sbjct: 114 IEILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLR 171
Query: 113 ----------AFEHVAAKS-------TEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDS 155
F K+ T I D+ A E+ V + + ++DI+
Sbjct: 172 NESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREID--VNNINVPEQPVIDINM 229
Query: 156 EGKDVSLNELENIHLHKTAK---LLEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVV 212
++ +NI +HKTA L + + +++ + +G FQ+
Sbjct: 230 ----INFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIH 285
Query: 213 DDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
DD LD+ S + GK G D+ ++K T+P + E
Sbjct: 286 DDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFE 319
>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 361
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 28/211 (13%)
Query: 65 LEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEI 124
+E + LV DD+ MD RRGKP ++ G T D ++ ++ + A
Sbjct: 86 IEFLQAHYLVEDDI--MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMA--WHY 141
Query: 125 SPDR-VVRAIAELGSAVGSEGLVAGEIMDI----DSEGKDVSLNE-------------LE 166
DR ++ + L V V G++ D+ DS D + + +
Sbjct: 142 FADRPFLKDLLCLFQKVDYATAV-GQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYK 200
Query: 167 NIHLHKTA--KLLEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKE 224
I +KT L +E+ V + A IG FQV DD++D ++
Sbjct: 201 RIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQ 260
Query: 225 LGKTAGKDLVSDKATY--PKLMGIENARKFA 253
LGK G D+ K ++ +G NA + A
Sbjct: 261 LGKV-GTDIEDAKCSWLAVTFLGKANAAQVA 290
>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid
And Mg2+
Length = 362
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 28/211 (13%)
Query: 65 LEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEI 124
+E + LV DD+ MD RRGKP ++ G T D ++ ++ + A
Sbjct: 87 IEFLQAHYLVEDDI--MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMA--WHY 142
Query: 125 SPDR-VVRAIAELGSAVGSEGLVAGEIMDI----DSEGKDVSLNE-------------LE 166
DR ++ + L V V G++ D+ DS D + + +
Sbjct: 143 FADRPFLKDLLCLFQKVDYATAV-GQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYK 201
Query: 167 NIHLHKTA--KLLEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKE 224
I +KT L +E+ V + A IG FQV DD++D ++
Sbjct: 202 RIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQ 261
Query: 225 LGKTAGKDLVSDKATY--PKLMGIENARKFA 253
LGK G D+ K ++ +G NA + A
Sbjct: 262 LGKV-GTDIEDAKCSWLAVTFLGKANAAQVA 291
>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase
pdb|1YHL|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase With Risedronate, Dmapp And Mg+2
pdb|3IBA|A Chain A, Crystal Structure Of The Complex Of Trypanosoma Cruzi
Farnesyl Diphosphate Synthase With Zoledronate, Ipp And
Mg2+
pdb|3ICK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Minodronate And Isopentenyl Disphosphate
pdb|3ICM|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate, Mg2+ And
1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-3-Phenyl-Pyridinium
pdb|3ICN|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate And
3-Fluoro-1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-Pyridinium
pdb|3ICZ|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
1-(2,2-Bis-Phosphono-Ethyl)-3-Butyl-Pyridinium And
Isopentenyl Pyrophosphate
pdb|3ID0|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
3-Fluoro-1-(2-Hydroxy-2,2-Bisphosphono-Ethyl) Pyridinium
pdb|4DWB|A Chain A, Crystal Structure Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DWG|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-heptylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|B Chain B, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|C Chain C, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 362
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 28/211 (13%)
Query: 65 LEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEI 124
+E + LV DD+ MD RRGKP ++ G T D ++ ++ + A
Sbjct: 87 IEFLQAHYLVEDDI--MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMA--WHY 142
Query: 125 SPDR-VVRAIAELGSAVGSEGLVAGEIMDI----DSEGKDVSLNE-------------LE 166
DR ++ + L V V G++ D+ DS D + + +
Sbjct: 143 FADRPFLKDLLCLFQKVDYATAV-GQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYK 201
Query: 167 NIHLHKTA--KLLEAAXXXXXXXXXXNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKE 224
I +KT L +E+ V + A IG FQV DD++D ++
Sbjct: 202 RIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQ 261
Query: 225 LGKTAGKDLVSDKATY--PKLMGIENARKFA 253
LGK G D+ K ++ +G NA + A
Sbjct: 262 LGKV-GTDIEDAKCSWLAVTFLGKANAAQVA 291
>pdb|2O1O|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2O1O|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2Q58|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
pdb|2Q58|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
Length = 368
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 57 SAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDAL------L 110
S + +E I + L+ DD+ MD+ FRRG P + V G+ AI D L
Sbjct: 96 SIYLLGWVVEAIQALILIADDI--MDSGKFRRGAPCWYIVHGQSNAI--NDIFFLKMLSL 151
Query: 111 SLAFE 115
SL FE
Sbjct: 152 SLIFE 156
>pdb|1YHM|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|B Chain B, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|C Chain C, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
Length = 362
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 193 IEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATY--PKLMGIENAR 250
+E V + A IG FQV DD+ D ++LGK G D+ K ++ +G NA
Sbjct: 230 VEXNLVERVAHLIGEYFQVQDDVXDCFTPPEQLGKV-GTDIEDAKCSWLAVTFLGKANAA 288
Query: 251 KFA 253
+ A
Sbjct: 289 QVA 291
>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|B Chain B, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|C Chain C, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|D Chain D, Alpha-1,2-Mannosidase From Trichoderma Reesei
Length = 503
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 63 CALEMIHTMSLVHDDLPCMDN--DDFRRGKPTNHKVFGEDTAILAGDA 108
+ H + HDDL + N DD R G ++ + G DTAIL GDA
Sbjct: 25 TSWNAYHHFAFPHDDLHPVSNSFDDERNGWGSS-AIDGLDTAILMGDA 71
>pdb|3PGW|B Chain B, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|Q Chain Q, Crystal Structure Of Human U1 Snrnp
Length = 231
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 75 HDDLPCMDNDDFRRGKPTNHK--------VFGEDTAILAGDALLSLAFEHVAAKSTEIS 125
H +L D D+FR+ KP N K V G +L G+ L+S+ E K T I+
Sbjct: 37 HMNLILCDCDEFRKIKPKNSKQAEREEKRVLG--LVLLRGENLVSMTVEGPPPKDTGIA 93
>pdb|3CW1|A Chain A, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|H Chain H, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|I Chain I, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|J Chain J, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 174
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 75 HDDLPCMDNDDFRRGKPTNHK--------VFGEDTAILAGDALLSLAFEHVAAKSTEIS 125
H +L D D+FR+ KP N K V G +L G+ L+S+ E K T I+
Sbjct: 37 HMNLILCDCDEFRKIKPKNSKQAEREEKRVLG--LVLLRGENLVSMTVEGPPPKDTGIA 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,386,905
Number of Sequences: 62578
Number of extensions: 275917
Number of successful extensions: 927
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 89
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)