BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038404
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/292 (69%), Positives = 242/292 (82%), Gaps = 5/292 (1%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
+ +KA+ VNKALD V LR P KIHEAMRYSLLAGGKRVRPVLCIA+CELVGG+ES+AMP
Sbjct: 80 IITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMP 139
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
ACA+EMIHTMSL+HDDLPCMDNDD RRGKPTNHKVFGED A+LAGDALLS AFEH+A+
Sbjct: 140 AACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASA 199
Query: 121 STE--ISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEG---KDVSLNELENIHLHKTAK 175
++ +SP RVVRA+ EL A+G+EGLVAG+++DI SEG DV L LE IHLHKTA
Sbjct: 200 TSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAA 259
Query: 176 LLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVS 235
LLEA+ V G I+GGG+ E+ER+RK+ARCIGLLFQVVDDILDVTKSSKELGKTAGKDL++
Sbjct: 260 LLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIA 319
Query: 236 DKATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
DK TYPK+MG+E +R+FA L +A ++L F+ + APL LA YIA RQ+
Sbjct: 320 DKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/288 (71%), Positives = 239/288 (82%), Gaps = 4/288 (1%)
Query: 4 KAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVAC 63
KA VNKALD V LR P KIHEAMRYSLLAGGKRVRPVLCIA+CELVGG+ES AMP C
Sbjct: 79 KADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARC 138
Query: 64 ALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA-AKST 122
A+EMIHTMSL+HDDLPCMDNDD RRGKPTNHKV+GED A+LAGDALLS AFEH+A A S+
Sbjct: 139 AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSS 198
Query: 123 EISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD---VSLNELENIHLHKTAKLLEA 179
E+SP RVVRA+ EL A+G+EGLVAG+++DI SEG D V L L+ IHLHKTA LLEA
Sbjct: 199 EVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEA 258
Query: 180 AVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
+ V G IIGGG+ E+ER+RK+ARCIGLLFQVVDDILDVTKSS+ELGKTAGKDL++DK T
Sbjct: 259 SAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLT 318
Query: 240 YPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
YPKLMG+E +R+FA L +A ++L F+ + APL LA YIA+RQ+
Sbjct: 319 YPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/288 (68%), Positives = 237/288 (82%), Gaps = 1/288 (0%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
M K +N+AL+ + L+ PAKIHE+MRYSLLAGGKRVRP LC+A+CELVGG++S AMP
Sbjct: 83 MLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMP 142
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
ACA+EMIHTMSL+HDDLPCMDNDD RRGKPTNH VFGED A+LAGDALL+ AFEH+A
Sbjct: 143 AACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVS 202
Query: 121 STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEG-KDVSLNELENIHLHKTAKLLEA 179
+ +S R+VRA+ EL A+G+EGLVAG+++DI+SEG +V L +LE IH+HKTAKLLE
Sbjct: 203 TLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEG 262
Query: 180 AVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
AVV G I+GGG EVE++RKYAR IGLLFQVVDDILDVTKSS+ELGKTAGKDLV+DK T
Sbjct: 263 AVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVT 322
Query: 240 YPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
YPKL+GIE +R+FA L +A E+LA F+ +AAPL LA YIA RQ+
Sbjct: 323 YPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/290 (69%), Positives = 236/290 (81%), Gaps = 4/290 (1%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
M KA VN+ALD V LR P KIHEA+RYSLLA GKRVRPVLCIA+CELVGG+ES A+P
Sbjct: 59 MIGKANAVNEALDSAVSLREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGEESVALP 118
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
ACA+EMIHTMSL+HDDLPCMDNDD RRGKPTNHKVFGED A+LAGDAL+S AFEH+A
Sbjct: 119 AACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAFEHLAT- 177
Query: 121 STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEG---KDVSLNELENIHLHKTAKLL 177
ST +SP RVVRAI EL A+GS+GLVAG+++D+ S G DV L LE IH+HKTA LL
Sbjct: 178 STAVSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLL 237
Query: 178 EAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDK 237
EAA V G I+GGG+ EVE++R++ARCIGLLFQVVDDILDVTKSS+ELGKTAGKDL++DK
Sbjct: 238 EAATVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLIADK 297
Query: 238 ATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
TYPKLMG+E ++ FA LL+ A E+L F+ +R PL LA YIA RQ+
Sbjct: 298 LTYPKLMGLEKSKDFADKLLSDAHEQLHGFDSSRVKPLLALANYIAKRQN 347
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/288 (67%), Positives = 233/288 (80%), Gaps = 1/288 (0%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
M KA VNKAL++ V +R P KIHE+MRYSLLAGGKRVRP+LCIA+CEL GG ES AMP
Sbjct: 70 MIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMP 129
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
ACA+EMIHTMSL+HDDLPCMDNDD RRGKPTNHKVFGED A+LAGDALL+ AFEH+A
Sbjct: 130 SACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATA 189
Query: 121 STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEG-KDVSLNELENIHLHKTAKLLEA 179
+ +S +R+VR + EL +GSEGLVAG+++D+ SEG DV L LE IH+HKTA LLE
Sbjct: 190 TKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEG 249
Query: 180 AVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
+VV G I+GG N ++ ++RK+ARCIGLLFQVVDDILDVTKSS+ELGKTAGKDLV+DK T
Sbjct: 250 SVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVT 309
Query: 240 YPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
YPKL+GI+ +R+FA L +A E+LA F+ +AAPL LA YIA R +
Sbjct: 310 YPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/288 (64%), Positives = 234/288 (81%), Gaps = 1/288 (0%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
+T KA VNKALDE + ++ P IHEAMRYSLLAGGKRVRP+LC+A+CELVGG++ +AM
Sbjct: 82 VTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMA 141
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
ACA+EMIHTMSL+HDDLPCMDNDD RRGKPTNHK++GED A+LAGD+LL+ AFEH+
Sbjct: 142 AACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNS 201
Query: 121 STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK-DVSLNELENIHLHKTAKLLEA 179
+ ++P R+V A+AEL ++G+EGLVAG++ DI G VSL LE IH+HKTA LLE+
Sbjct: 202 TAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLES 261
Query: 180 AVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
+VV G I+GGG +EVE++R++ARCIGLLFQVVDDILDVTKSS+ELGKTAGKDLV DK T
Sbjct: 262 SVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTT 321
Query: 240 YPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
YPKL+G+E A++FA +L +A ++L F+ +AAPL LA YIA R +
Sbjct: 322 YPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/289 (62%), Positives = 221/289 (76%), Gaps = 5/289 (1%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
M SKA+ VNKAL+E + + P KIHEAMRY++LA GKRVRP+LC+ASCELVGG E++AMP
Sbjct: 89 MMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMP 148
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
ACA+EMIHTMSL+ DDLPCMDNDD RRGKPT HKV+GE AIL+G ALLSLAFEH+
Sbjct: 149 AACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMT-- 206
Query: 121 STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD---VSLNELENIHLHKTAKLL 177
+ EIS +R+V A+ EL ++G+ GLVAG+ MDI SEG D V L LE IH+HKTA LL
Sbjct: 207 TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLL 266
Query: 178 EAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDK 237
E A V G IIGGG+ E+E VRK+ARCIGLLFQVVDDILD TKSS+ELGKTAGKD ++ K
Sbjct: 267 ETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGK 326
Query: 238 ATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQ 286
TYPKL+G+E +++F L A + L F + APL L +IA+R
Sbjct: 327 LTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANRN 375
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 353 bits (907), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 172/290 (59%), Positives = 219/290 (75%), Gaps = 5/290 (1%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
M SKA+ +N+ALDE + L P IH+AMRY++LAGGKRVRP+LC+A+CELVGG+E A+
Sbjct: 85 MISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQ 144
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
ACA+EMIHTMSL+ DDLPCMDNDD RRGKPT HKVFGE AIL+G ALL+LAFEH+
Sbjct: 145 AACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLT-- 202
Query: 121 STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEG---KDVSLNELENIHLHKTAKLL 177
++S ++VRA+ EL ++G++GLVAG+ D+ SEG DV L +LE IH+HKT LL
Sbjct: 203 EADVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLL 262
Query: 178 EAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDK 237
EA+ V G +IGGG E+E+VR +ARCIGLLFQVVDDILD TKSS+ELGKTAGKD V+ K
Sbjct: 263 EASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGK 322
Query: 238 ATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
TYPK++G+E +++F L A E L F+ + PL L +IA+R H
Sbjct: 323 LTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 345 bits (886), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 185/291 (63%), Positives = 228/291 (78%), Gaps = 5/291 (1%)
Query: 1 MTSKAKRVNKALD-ETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAM 59
M KA+ VN ALD V LR P + EA+RYSLLAGGKRVRP+LCIA CELVGGDE++AM
Sbjct: 70 MIRKAESVNAALDVSIVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAM 129
Query: 60 PVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAA 119
ACA+EMIHT SL+HDDLPCMDN D RRGKPTNHKVFGED A+LAGDALL+LAFEH+
Sbjct: 130 SAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVFGEDMAVLAGDALLALAFEHMTV 189
Query: 120 KSTE-ISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSE---GKDVSLNELENIHLHKTAK 175
S+ ++ +R++RA+ EL A+G++GLVAG+++D+ SE DV L LE IHLHKTA
Sbjct: 190 VSSGLVASERMIRAVVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIHLHKTAA 249
Query: 176 LLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVS 235
LLEAA V G I+GGG E+E++RKYARCIGLLFQVVDDILDVTKS++ELGKTAGKD+++
Sbjct: 250 LLEAAAVIGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMA 309
Query: 236 DKATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQ 286
K TYP+L+G+E +R+ A L +A E+L FE +AAPL LA YI+ R
Sbjct: 310 GKLTYPRLIGLERSREVAEKLSREAEEQLLGFESDKAAPLVALASYISCRN 360
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 339 bits (870), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 171/293 (58%), Positives = 219/293 (74%), Gaps = 8/293 (2%)
Query: 1 MTSKAKRVNKALDETVQLRHPA-KIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAM 59
M +KAK VNKAL+E V LR P KI EAMRY+LL+ GKRVRP+LC+A+CELVGG ES+AM
Sbjct: 54 MVNKAKSVNKALEEAVPLREPELKIREAMRYTLLSDGKRVRPMLCLAACELVGGQESTAM 113
Query: 60 PVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAA 119
ACA+EM+H SL+ DDLPCMDND RRGKPTNH VFGE AILA AL++LA + +
Sbjct: 114 SAACAIEMLHASSLILDDLPCMDNDSLRRGKPTNHIVFGESIAILASQALIALAVQKTTS 173
Query: 120 KS-TEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEG----KDVSLNELENIHLHKTA 174
+ ++ P+R+++ + E+ AV EGLVAG+ D+ EG D L LE IH+HKTA
Sbjct: 174 STFADVPPERILKTVQEMVKAV--EGLVAGQQADLAGEGMRFDSDTGLEHLEFIHIHKTA 231
Query: 175 KLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLV 234
LLEAA V G I+GGG+ E+ER+R YARCIGL+FQVVDD+LDVTKSS+ELGKTAGKDL+
Sbjct: 232 ALLEAAAVMGAIMGGGSDEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGKDLI 291
Query: 235 SDKATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
+ K TYP+LMG+E ++++A L +A E L F++ + APL LA YI +RQ+
Sbjct: 292 AGKLTYPRLMGVEKSKEYAERLNIEAREHLLGFDIDKVAPLVSLADYIVNRQN 344
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 333 bits (855), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 184/291 (63%), Positives = 232/291 (79%), Gaps = 4/291 (1%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
M KA+ VN ALD +V LR P + EA+RYSLLAGGKRVRP+LCIA CELVGGDE++AM
Sbjct: 70 MIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMS 129
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
ACA+EMIHT SL+HDDLPCMDN D RRGKPTNHKV+GED A+LAGDALL+LAFEH+
Sbjct: 130 AACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVV 189
Query: 121 STE-ISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD---VSLNELENIHLHKTAKL 176
S+ ++P+R++RA+ EL A+G+ GLVAG+++D+ SE + V L LE IHLHKTA L
Sbjct: 190 SSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAAL 249
Query: 177 LEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSD 236
LEAA V GVI+GGG E+E++RKYARCIGLLFQVVDDILDVTKS++ELGKTAGKD+++
Sbjct: 250 LEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAG 309
Query: 237 KATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
K TYP+L+G+E +++ A L +A E+L F+ ++AAPL LA YIA R +
Sbjct: 310 KLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 333 bits (855), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 184/291 (63%), Positives = 232/291 (79%), Gaps = 4/291 (1%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
M KA+ VN ALD +V L P I EA+RYSLLAGGKRVRP+LCIA+CELVGGDE++AM
Sbjct: 70 MIRKAESVNAALDVSVPLLKPLTIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEATAMS 129
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
ACA+EMIHT SL+HDDLPCMDN D RRGKPTNHKV+GED A+LAGDALL+LAFEH+
Sbjct: 130 AACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVV 189
Query: 121 STE-ISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD---VSLNELENIHLHKTAKL 176
S+ ++P++++RA+ EL A+G+ GLVAG+++D+ SE + V L LE IHLHKTA L
Sbjct: 190 SSGLVAPEKMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAAL 249
Query: 177 LEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSD 236
LEAA V GVI+GGG E+E++RKYARCIGLLFQVVDDILDVTKS++ELGKTAGKD+++
Sbjct: 250 LEAAAVLGVIMGGGTEQEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAG 309
Query: 237 KATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
K TYP+L+G+E +R+ A L +A E+L F+ ++AAPL LA YIA R +
Sbjct: 310 KLTYPRLIGLEGSREVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 326 bits (836), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 182/291 (62%), Positives = 230/291 (79%), Gaps = 4/291 (1%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
M KA+ V+ AL+ +V L+ P I EA+RYSLLAGGKRVRP+LCIA+CELVGGDE++AM
Sbjct: 67 MIRKAESVSAALNVSVPLQEPLTIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEATAMS 126
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
ACA+EMIHT SL+HDDLPCMD+ D RRGKPTNHK FGED A+LAGDALL+LAFEH+
Sbjct: 127 AACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKEFGEDMAVLAGDALLALAFEHMTFV 186
Query: 121 STE-ISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEG---KDVSLNELENIHLHKTAKL 176
S ++P+R++RA+ EL A+G++GLVAG++ D+ S+G DV L LE IHLHKTA L
Sbjct: 187 SNGLVAPERMIRAVMELAKAIGTKGLVAGQVTDLCSQGLNPDDVGLERLEFIHLHKTAAL 246
Query: 177 LEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSD 236
LEAA V G I+GGG E+E++RKYARCIGLLFQVVDDILDVT+S+KELGKTAGKD+++
Sbjct: 247 LEAAAVLGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTESTKELGKTAGKDVMAG 306
Query: 237 KATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
K TYP+L+G+E +R+ A L +A E+L F+ +AAPL LA YIA R +
Sbjct: 307 KLTYPRLIGLERSREVAEKLRREAAEQLLGFDSDKAAPLVALASYIACRHN 357
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 318 bits (816), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 169/301 (56%), Positives = 222/301 (73%), Gaps = 14/301 (4%)
Query: 1 MTSKAKRVNKALDET-------VQLRHPA-KIHEAMRYSLLAGGKRVRPVLCIASCELVG 52
M +KAK +NKALD + V L P ++H+AMRY+LL GGKRVRP+LC+ +CELVG
Sbjct: 36 MKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVG 95
Query: 53 GDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSL 112
G ES+AMP ACA+EMIH SL+ DDLPCMD+D RRGKPTNHKVFGE T+ILA +AL SL
Sbjct: 96 GQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNALRSL 155
Query: 113 AFEH-VAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSE-----GKDVSLNELE 166
A + +A+ S ++ +RV+RA+ E+ AVG+EGLVAG+ D+ E +D L LE
Sbjct: 156 AVKQTLASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLE 215
Query: 167 NIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELG 226
+H+HKTA L+EAA V G I+GGG+ E+ER++ YARC+GL+FQV+DD+LD TKSS+ELG
Sbjct: 216 LMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELG 275
Query: 227 KTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQ 286
KTAGKDL++ K TYPK+MG++NAR++A L +A E L F+ + PL LA YI RQ
Sbjct: 276 KTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQ 335
Query: 287 H 287
+
Sbjct: 336 N 336
>sp|Q9LHR4|GGPPC_ARATH Geranylgeranyl pyrophosphate synthase 12, chloroplastic
OS=Arabidopsis thaliana GN=At3g32040 PE=2 SV=1
Length = 360
Score = 317 bits (811), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 176/291 (60%), Positives = 228/291 (78%), Gaps = 4/291 (1%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
M KA+ V+ AL+ +V + P I EA+RYSLLAGGKRVRP+LCIA+CELVGGDE++AM
Sbjct: 70 MIRKAESVSMALNVSVPPQDPLAIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEATAMS 129
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
ACA+EMIHT SL+HDDLPCMD+ D RRGKPTNHKVFGE A+LAGDALL+LAFEH+
Sbjct: 130 AACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKVFGEHMAVLAGDALLALAFEHMTVV 189
Query: 121 STE-ISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEG---KDVSLNELENIHLHKTAKL 176
S+ ++P+R++R++ EL A+G++GLVAG++ D+ S+G DV L LE IHLHKTA L
Sbjct: 190 SSGLVAPERMIRSVTELAKAIGTKGLVAGQVSDLCSQGLNPYDVGLERLEFIHLHKTAAL 249
Query: 177 LEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSD 236
LEAA V G IIGGG E++++RKY RCIGLLFQVVDDI+DVT+S++ELGKTAGKD+++
Sbjct: 250 LEAAAVLGAIIGGGTEEEIQKLRKYGRCIGLLFQVVDDIIDVTESTEELGKTAGKDVMAR 309
Query: 237 KATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
K TYP+L+G+E +R+ A L +A E+L F+ + APL LA YIA R +
Sbjct: 310 KLTYPRLIGLERSREVAEKLRREAAEQLLGFDSNKVAPLVALASYIACRHN 360
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 302 bits (773), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 142/281 (50%), Positives = 202/281 (71%), Gaps = 2/281 (0%)
Query: 8 VNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEM 67
V L++++ +P I++++RYSL AGGKR+RP+LC+ASCEL GG A+P ACALEM
Sbjct: 21 VEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEM 80
Query: 68 IHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPD 127
IHTMSL+HDDLP MDND +RRGKPTNH ++GED AILAGDALL+ AFE +A ++ + D
Sbjct: 81 IHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKNVPAD 140
Query: 128 RVVRAIAELGSAVGSEGLVAGEIMDIDSEGK-DVSLNELENIHLHKTAKLLEAAVVCGVI 186
+V+ IA++ +V + GLV G+I+D+ SEGK D +L L IH+HKT LLEAAV+ G +
Sbjct: 141 LIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGAL 200
Query: 187 IGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGI 246
+ G ++ R +YA+ IGL FQ++DD+LD+ + ++LGK+ GKDL + KATYP G+
Sbjct: 201 LAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGV 260
Query: 247 ENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
E + K A L+ +A EE+ YF+ +A PL +A +I +R +
Sbjct: 261 EESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 247 bits (631), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 130/289 (44%), Positives = 186/289 (64%), Gaps = 3/289 (1%)
Query: 1 MTSKAKRVNKALDETVQ-LRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAM 59
+ + + V AL ++ L PAK+ +AM YSL AGGKR+RP+L +++ +G D + +
Sbjct: 10 LNEQKQAVETALSRYIERLEGPAKLKKAMAYSLEAGGKRIRPLLLLSTVRALGKDPAVGL 69
Query: 60 PVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAA 119
PVACA+EMIHT SL+HDDLP MDNDD RRGKPTNHKVFGE AILAGD LL+ AF+ +
Sbjct: 70 PVACAIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQLITE 129
Query: 120 KSTE-ISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLE 178
E I P +R I L A G EG+VAG+ D++ EGK ++L+ELE IH HKT K+L+
Sbjct: 130 IDDERIPPSVRLRLIERLAKAAGPEGMVAGQAADMEGEGKTLTLSELEYIHRHKTGKMLQ 189
Query: 179 AAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKA 238
+V G +IGG + + + ++A +GL FQ+ DDILD+ + +++GK G D ++KA
Sbjct: 190 YSVHAGALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKA 249
Query: 239 TYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
TYP L+ + A++ + A L +V AA L ++ +A+R H
Sbjct: 250 TYPALLSLAGAKEKLAFHIEAAQRHLRNADVDGAA-LAYICELVAARDH 297
>sp|O66126|ISPA_MICLU Farnesyl diphosphate synthase OS=Micrococcus luteus GN=fps PE=3
SV=1
Length = 291
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 123/269 (45%), Positives = 177/269 (65%), Gaps = 5/269 (1%)
Query: 20 HPA--KIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDD 77
HPA ++HEA+ YSL AGGKR+RP+L + + + +GG+ +P ALEMIHT SL+HDD
Sbjct: 25 HPAQSRLHEAINYSLSAGGKRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIHTYSLIHDD 84
Query: 78 LPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELG 137
LP MDNDD+RRGK TNHK F E TAILAGDALL+ AF+ + +T+++ + + I L
Sbjct: 85 LPAMDNDDYRRGKLTNHKRFDEATAILAGDALLTDAFQCIL--NTQLNAEIKLSLINLLS 142
Query: 138 SAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVER 197
+A GS G+V G+++D+ E K ++LNELE IH+HKT +L+ AA+V II N ++E+
Sbjct: 143 TASGSNGMVYGQMLDMQGEHKTLTLNELERIHIHKTGELIRAAIVSAGIIMNFNDAQIEQ 202
Query: 198 VRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLL 257
+ + +GL+FQ+ DDILDV S + +GKT G DL +DK+TY L+G+E +++ D L
Sbjct: 203 LNIIGKNVGLMFQIKDDILDVEGSFENIGKTVGSDLNNDKSTYVSLLGLEASKQLLNDKL 262
Query: 258 AQATEELAYFEVARAAPLYHLAYYIASRQ 286
+ + L + L L YI R
Sbjct: 263 TETYDALKTLQPIN-DNLKTLITYIVERN 290
>sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit,
chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
Length = 326
Score = 220 bits (561), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 153/236 (64%), Gaps = 14/236 (5%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLA-GGKRVRPVLCIASCELVGGDESSAM 59
T+ +N+ LDE + ++HPA I+EAMRYS+LA G KR PV+C+A+CEL GGD +A
Sbjct: 51 WTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAF 110
Query: 60 PVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAA 119
P ACALEM+H SL+HDDLPCMD+D RRGKP+NH V+G AILAGDAL LAF+H+ +
Sbjct: 111 PTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVS 170
Query: 120 KSTEISPDRVVRA-----IAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTA 174
+ PD V RA I E+ VGS G+ AG+ +D+ EG L+ ++ K
Sbjct: 171 HT---PPDLVPRATILRLITEIARTVGSTGMAAGQYVDL--EGGPFPLSFVQE---KKFG 222
Query: 175 KLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAG 230
+ E + VCG ++GG E++ +R+Y R +G+L+QVVDDI + K S + G G
Sbjct: 223 AMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITEDKKKSYDGGAEKG 278
>sp|P54383|ISPA_BACSU Farnesyl diphosphate synthase OS=Bacillus subtilis (strain 168)
GN=ispA PE=3 SV=2
Length = 296
Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 180/274 (65%), Gaps = 2/274 (0%)
Query: 15 TVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLV 74
T +L P + ++M YSL AGGKR+RP++ +A G E +PV CA+EMIHT SL+
Sbjct: 24 TEKLDMPDSLKKSMLYSLQAGGKRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLI 83
Query: 75 HDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK-STEISPDRVVRAI 133
HDDLPCMD+DD RRGKPTNHKVFGE TA+LAGD LL+ +F+ + + S E+S ++ +R +
Sbjct: 84 HDDLPCMDDDDLRRGKPTNHKVFGEATAVLAGDGLLTESFKLITSHVSDEVSAEKRLRLV 143
Query: 134 AELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMI 193
EL SA G+EG+V G++ D+++E + V+L ELE+IH KTAKLL V+ G I+
Sbjct: 144 NELISAAGTEGMVGGQVADMEAENRQVTLEELESIHERKTAKLLGFCVIAGAILADAPEE 203
Query: 194 EVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFA 253
++E +R ++ IG+ FQ+ DDILD+ S +++GK G D +DK+TYP L+ +E A K
Sbjct: 204 DIETLRTFSSHIGIGFQIRDDILDLEGSEEKIGKRVGSDTTNDKSTYPSLLSLEGA-KHK 262
Query: 254 CDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287
D+ + + L + LY L IA+R H
Sbjct: 263 LDVHIKEAKRLIGGLSLQKDLLYELCDLIAARDH 296
>sp|P45204|ISPA_HAEIN Farnesyl diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispA PE=3 SV=1
Length = 295
Score = 197 bits (500), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 124/285 (43%), Positives = 173/285 (60%), Gaps = 9/285 (3%)
Query: 7 RVNKALDETVQ--LRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACA 64
R+N+ L+ + H A + EAM+Y+LL GGKRVRP L A+ +++G ++ + A A
Sbjct: 14 RINRFLEAQFEGIESHNAPLLEAMKYALLLGGKRVRPFLVYATGQMLGAEKQTLDYAAAA 73
Query: 65 LEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEI 124
+E IH SL+HDDLP MD+D+ RRG PT H F E TAILAGDAL S AFE + K+ I
Sbjct: 74 IEAIHAYSLIHDDLPAMDDDNLRRGHPTCHIQFDEATAILAGDALQSFAFE-ILTKTPNI 132
Query: 125 SPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCG 184
S ++ + I L G +G+ G+ +D+ SE K +SL+ELE IH +KT LL AA+ G
Sbjct: 133 STEQKLALIQILAQGAGVQGMCLGQSLDLISEHKQISLSELELIHRNKTGALLIAALKLG 192
Query: 185 VIIG---GGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYP 241
I +E + + +YA IGL FQV DDILD+ S E+GK G DL DK+TYP
Sbjct: 193 FICSPHFTDKRLE-QSLTQYAEAIGLAFQVQDDILDIEGDSAEIGKQVGADLDLDKSTYP 251
Query: 242 KLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQ 286
KL+G+ A++ A DL A EL ++ + LA +I +R+
Sbjct: 252 KLLGLSGAKQKAQDLYQSALSELE--KIPFDTTVRALAEFIITRK 294
>sp|P22939|ISPA_ECOLI Farnesyl diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispA PE=1 SV=1
Length = 299
Score = 177 bits (450), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 122/264 (46%), Positives = 153/264 (57%), Gaps = 4/264 (1%)
Query: 26 EAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDD 85
E M+Y L GGKR+RP L A+ + G ++ A A+E IH SL+HDDLP MD+DD
Sbjct: 34 ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDD 93
Query: 86 FRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA-AKSTEISPDRVVRAIAELGSAVGSEG 144
RRG PT H FGE AILAGDAL +LAF ++ A E+S + I+EL SA G G
Sbjct: 94 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAG 153
Query: 145 LVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERV-RKYAR 203
+ G+ +D+D+EGK V L+ LE IH HKT L+ AAV G + G V KYA
Sbjct: 154 MCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAE 213
Query: 204 CIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEE 263
IGL FQV DDILDV + LGK G D K+TYP L+G+E ARK A DL+ A +
Sbjct: 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQS 273
Query: 264 LAYF--EVARAAPLYHLAYYIASR 285
L + + L LA YI R
Sbjct: 274 LKQLAEQSLDTSALEALADYIIQR 297
>sp|P57537|ISPA_BUCAI Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ispA PE=3 SV=1
Length = 282
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 160/250 (64%), Gaps = 10/250 (4%)
Query: 7 RVNKALDETV-QL-RHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACA 64
R+N+ L T+ QL + + +AM+YS+ +G KR+R L ++ ++ + ++ ++ A
Sbjct: 13 RINQKLFYTLNQLPFQKSSLLKAMKYSVFSGSKRLRSSLIYSTGDVFKVNITTLDVISTA 72
Query: 65 LEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKST-E 123
+E IH+ SL+HDDLPCMDND+FRRGK + H +GE T++LAGDAL SLAF ++
Sbjct: 73 IEFIHSYSLIHDDLPCMDNDNFRRGKISCHVKYGESTSLLAGDALQSLAFNILSNSFMPN 132
Query: 124 ISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVC 183
+S + ++ I+EL ++GS G+ G+ +D+++E KDV+L+ELE I+L+KT+ L+ +AV
Sbjct: 133 VSNLKRIKMISELSYSIGSSGMCMGQNLDLEAEKKDVNLSELEIINLYKTSFLMRSAVRL 192
Query: 184 GVIIGGGNMIE--VERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYP 241
V N + + + ++ IGL FQ+ DDILD K S KT K ++ K TYP
Sbjct: 193 -VYFSSNNFSKSILSILDLFSISIGLAFQIQDDILDFKKDS---VKTDNKKIIK-KHTYP 247
Query: 242 KLMGIENARK 251
++G++ +RK
Sbjct: 248 LIIGLDESRK 257
>sp|Q8K9A0|ISPA_BUCAP Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ispA PE=3 SV=1
Length = 294
Score = 167 bits (424), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 151/249 (60%), Gaps = 10/249 (4%)
Query: 7 RVNKALDETVQLRHPAK---IHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVAC 63
R+NK L E +Q P + + AM+YS L+GGKR+R L A+ E + ++ ++
Sbjct: 13 RINKKLFEIIQ-ELPFQDSVLFRAMKYSTLSGGKRLRACLIYATGETFQVNIAALDVISA 71
Query: 64 ALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTE 123
A+E++H+ SL+HDDLPC+DND FRRGK + H +GE+ A+LAGDAL LAF ++ +
Sbjct: 72 AVELVHSYSLIHDDLPCIDNDYFRRGKISCHIKYGENFALLAGDALQGLAFNILSNSNMP 131
Query: 124 ISPDRV-VRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVV 182
D + ++ IAE +A+G G+ G+++D++ E K ++++ELE I+L+KTA L+ ++
Sbjct: 132 GVHDSIRLKMIAEFSNAIGYSGMCIGQMLDLEKERKKINISELEKINLYKTAFLIRCSIR 191
Query: 183 CGVIIGGGNMIEVERV-RKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYP 241
EV + K++ IGL FQ+ DDILD+ K+L K K TYP
Sbjct: 192 LAYFASNNFSKEVLFILDKFSVSIGLAFQIQDDILDLKNDIKKLESKRNK----TKNTYP 247
Query: 242 KLMGIENAR 250
L+G++ ++
Sbjct: 248 LLIGLKKSK 256
>sp|P55539|ISPA_RHISN Probable farnesyl diphosphate synthase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a02750 PE=3 SV=1
Length = 332
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 151/271 (55%), Gaps = 8/271 (2%)
Query: 1 MTSKAKRVNKALDETV--QLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSA 58
M + AKRV +AL + + ++ AMRY+ L GGKR R +LC+A+ L
Sbjct: 37 MQNGAKRVEQALARLLCAEDHGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHIL 96
Query: 59 MPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA 118
V A+EM+H +LVHDDLP MD+D RRG PT H FGE TAIL GDAL + AF +A
Sbjct: 97 DDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLA 156
Query: 119 AKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLE 178
S + D + + EL AV +EG G+ MD+ GK V L+ + +H K L+
Sbjct: 157 --SLDAPGDNRIALVRELAQAVSAEGAAGGQAMDLSLVGKHVELDRIVAMHRMKCGALVR 214
Query: 179 AAV----VCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLV 234
A+V +C + + + Y+ C GL QVVDDILD T + LGKT GKD
Sbjct: 215 ASVRMGALCAIAEDAADATLYCALDHYSACFGLALQVVDDILDATADTATLGKTPGKDAA 274
Query: 235 SDKATYPKLMGIENARKFACDLLAQATEELA 265
+ K T +MG++ AR+FA DLL +A E +A
Sbjct: 275 AQKPTCASIMGLQAARQFALDLLCEAGEAIA 305
>sp|Q45220|ISPA_BRAJA Probable farnesyl diphosphate synthase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=fppS PE=3 SV=1
Length = 332
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 151/271 (55%), Gaps = 8/271 (2%)
Query: 1 MTSKAKRVNKALDETV--QLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSA 58
M AKRV +AL + + ++ AMRY+ L GGKR R +LC+A+ L
Sbjct: 37 MQDGAKRVEEALARLLCAEDDGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHML 96
Query: 59 MPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA 118
V A+EM+H +LVHDDLP MD+D RRG PT H FGE TAIL GDAL + AF +A
Sbjct: 97 DDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLA 156
Query: 119 AKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLE 178
S D + + EL AV +EG G+ +D+ GK V L+ + +H K+ L+
Sbjct: 157 --SLNAPGDSPIALVRELAQAVSAEGAAGGQAIDLSLVGKHVELDRIVAMHRMKSGALVR 214
Query: 179 AAV----VCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLV 234
A+V +C V + + + Y+ C GL QV+DDILDVT + LGKT GKD
Sbjct: 215 ASVRMGALCAVGVNAAHAALYCALDHYSACFGLALQVIDDILDVTADTAALGKTPGKDAA 274
Query: 235 SDKATYPKLMGIENARKFACDLLAQATEELA 265
+ K T +MG++ AR+FA DLL A E +A
Sbjct: 275 AQKPTCASIMGLQEARQFALDLLRDAGEAIA 305
>sp|O66952|ISPA_AQUAE Farnesyl diphosphate synthase OS=Aquifex aeolicus (strain VF5)
GN=ispA PE=3 SV=1
Length = 262
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 134/231 (58%), Gaps = 13/231 (5%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
+ + +++ K L+E ++ P ++ EAM+Y L GKR+RP+ +A +GG+E A+
Sbjct: 4 IETWKEKIEKRLNEILKPEGPEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAIT 63
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
V +E+IH SL+HDDLPCMDND +RRG PT H FGE A+LAGDALL+ FE ++ +
Sbjct: 64 VGSGIELIHNYSLIHDDLPCMDNDVWRRGLPTCHIKFGEAMALLAGDALLTYTFEVLSQR 123
Query: 121 ST--EISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLE 178
+S + ++ + GS G+V G+++DI +L + + KT L E
Sbjct: 124 ENYKTLSCEEILEINKIIAQKAGSNGMVGGQVLDIK------GYEDLYEVSVKKTGALFE 177
Query: 179 AAVVCGVIIGG--GNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGK 227
A +CG ++ + E+E + R +GLLFQ+VDD LD ++LG+
Sbjct: 178 ACFMCGAVVAKRREKLKEMESI---GRKVGLLFQMVDDYLDKDGFYEKLGE 225
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 138/258 (53%), Gaps = 14/258 (5%)
Query: 10 KALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAM--PVACALEM 67
KAL P + A+ Y + GG R+RP + + S L GD+ A+ A ALE+
Sbjct: 13 KALSPEALGESPPLLAAALPYGVFPGGARIRPTILV-SVALACGDDCPAVTDAAAVALEL 71
Query: 68 IHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPD 127
+H SLVHDDLP DN D RRGKP+ HK + E A+LAGD+LL FE V A ++PD
Sbjct: 72 MHCASLVHDDLPAFDNADIRRGKPSLHKAYNEPLAVLAGDSLLIRGFE-VLADVGAVNPD 130
Query: 128 RVVRAIAELGSAVGSE-GLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVI 186
R ++ I++LG G+ G+ AG+ + +S+ +L H KT L AA G I
Sbjct: 131 RALKLISKLGQLSGARGGICAGQAWESESK------VDLAAYHQAKTGALFIAATQMGAI 184
Query: 187 IGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGI 246
G E E IG FQ+ DD+ D S++ +GK AG+D+ +++ K MGI
Sbjct: 185 AAG---YEAEPWFDLGMRIGSAFQIADDLKDALMSAEAMGKPAGQDIANERPNAVKTMGI 241
Query: 247 ENARKFACDLLAQATEEL 264
E ARK D+LA A +
Sbjct: 242 EGARKHLQDVLAGAIASI 259
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 155/299 (51%), Gaps = 43/299 (14%)
Query: 23 KIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMD 82
K++ A ++ L AGGKR+RP L + + L D +P A A+E+IH +L+HDD+ MD
Sbjct: 34 KLYNASKHLLFAGGKRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI--MD 91
Query: 83 NDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGS 142
NDD RRGKPT H V+GE AILAGD L + AFE V + I ++ + ++ S
Sbjct: 92 NDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAV----SRIKDNKKAHEVLKILSKACV 147
Query: 143 EGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYA 202
E + G+ MD++ E ++ E ++ KT LLEA+V G ++ N E E +++YA
Sbjct: 148 E-VCEGQAMDMEFENYYPTMEEYLDMIRKKTGALLEASVGIGAVMADCNEEEREALKEYA 206
Query: 203 RCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT-----------------YPKLMG 245
+ IGL FQ+ DD+LD+ K+LGK G D+ K T +++G
Sbjct: 207 KRIGLTFQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHALKTLDEDKKKRLLEILG 266
Query: 246 IENAR---------------KFACDLLAQATEE----LAYFEVARAAPLYHLAYYIASR 285
+N + ++A +L+ Q TEE L F R L LA +I SR
Sbjct: 267 NKNVKDEEIKEAIEILKPSIEYAKELMKQKTEEAKEYLKIFNKDRRKVLEDLADFIMSR 325
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 139/244 (56%), Gaps = 8/244 (3%)
Query: 9 NKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMI 68
+K + E + P + +A + + AGGK++RP L + SCE VGG+ A VA A+E+I
Sbjct: 16 DKRIMECISDITPDTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPEDAAGVAAAIELI 75
Query: 69 HTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDR 128
HT SL+HDD+ MD+D+ RRG+P+ H ++GE AILAGD L S AFE V +R
Sbjct: 76 HTFSLIHDDI--MDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIRNG---DSER 130
Query: 129 VVRAIAELGSAVGSEGLVAGEIMDIDSEGK-DVSLNELENIHLHKTAKLLEAAVVCGVII 187
V A+A + + + G+ +D+ E + DV+ +E + KTA L+ AA G I+
Sbjct: 131 VKDALAVVVDSCVK--ICEGQALDMGFEERLDVTEDEYMEMIYKKTAALIAAATKAGAIM 188
Query: 188 GGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
GG + EVE + Y + IGL FQ+ DD LDV + LGK G D+ K T + +E
Sbjct: 189 GGASEREVEALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALE 248
Query: 248 NARK 251
A +
Sbjct: 249 EASE 252
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 136/244 (55%), Gaps = 8/244 (3%)
Query: 9 NKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMI 68
++ + E++ P + A + + AGGK++RP L + S E VGGD A VA A+E+I
Sbjct: 16 DERIRESISDITPETLLRASEHLITAGGKKIRPSLALLSSEAVGGDPGDAAGVAAAIELI 75
Query: 69 HTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDR 128
HT SL+HDD+ MD+D+ RRG+P H ++GE AILAGD L S AFE V +
Sbjct: 76 HTFSLIHDDI--MDDDEIRRGEPAVHVLWGEPMAILAGDVLFSKAFEAVIRNG---DSEM 130
Query: 129 VVRAIAELGSAVGSEGLVAGEIMDIDSEGK-DVSLNELENIHLHKTAKLLEAAVVCGVII 187
V A+A + + + G+ +D+ E + DV+ E + KTA L+ AA G I+
Sbjct: 131 VKEALAVVVDSCVK--ICEGQALDMGFEERLDVTEEEYMEMIYKKTAALIAAATKAGAIM 188
Query: 188 GGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
GGG+ E+ + Y RCIGL FQ+ DD LDV + LGK G D+ K T + +E
Sbjct: 189 GGGSPQEIAALEDYGRCIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALE 248
Query: 248 NARK 251
A +
Sbjct: 249 RASE 252
>sp|P54976|CRTE_RHOS4 Geranylgeranyl pyrophosphate synthase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=crtE PE=3 SV=3
Length = 288
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 128/243 (52%), Gaps = 14/243 (5%)
Query: 21 PAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP--VACALEMIHTMSLVHDDL 78
P+K+ A+ Y++ GG R+RP L + S GD+ A+ A ALE+IH SLVHDDL
Sbjct: 24 PSKLATALDYAVTPGGARIRPTLLL-SVATACGDDRPALSDAAAVALELIHCASLVHDDL 82
Query: 79 PCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGS 138
PC D+ + RRGKPT H+ + E AIL GD+L+ + FE V A++ P R ++ + L
Sbjct: 83 PCFDDAEIRRGKPTVHRAYSEPLAILTGDSLIVMGFE-VLARAAADQPQRALQLVTALAV 141
Query: 139 AVGSE-GLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVER 197
G G+ AG+ + +S+ +N L H KT L AA G I G E E
Sbjct: 142 RTGMPMGICAGQGWESESQ-----IN-LSAYHRAKTGALFIAATQMGAIAAG---YEAEP 192
Query: 198 VRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLL 257
+ IG FQV DD+ D ++ LGK AG+D + + + G+E A K D+L
Sbjct: 193 WEELGARIGEAFQVADDLRDALCDAETLGKPAGQDEIHARPNAVREYGVEGAAKRLKDIL 252
Query: 258 AQA 260
A
Sbjct: 253 GGA 255
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 24 IHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDN 83
+ EA + AGGKR+RP++ ++S +L+GGD A A A+E++H +LVHDD+ MDN
Sbjct: 32 LEEASFHLFTAGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI--MDN 89
Query: 84 DDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSE 143
D RRG PT H +GE AILAGD L + AFE + + + +A + +++ E
Sbjct: 90 DGLRRGLPTVHVKWGEPMAILAGDYLHAKAFEALNEALKGLDGNTFYKAFSIFITSI--E 147
Query: 144 GLVAGEIMDIDSEGK-DVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYA 202
+ G+ MD+ E + DV+ E + KTA L + G II N V+++ +Y
Sbjct: 148 IISEGQAMDMSFENRLDVTEEEYIQMIKGKTAMLFSCSAALGGIINKANDDVVKKLTEYG 207
Query: 203 RCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
+G+ FQ+VDDIL + KELGK D+ K T
Sbjct: 208 LNLGISFQIVDDILGIIGDEKELGKPIYSDIREGKKT 244
>sp|P22873|CRTE_ESCVU Geranylgeranyl pyrophosphate synthase OS=Escherichia vulneris
GN=crtE PE=3 SV=1
Length = 307
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 128/227 (56%), Gaps = 8/227 (3%)
Query: 27 AMRYSLLAGGKRVRPVLCIASCELV--GGDESSAMPVACALEMIHTMSLVHDDLPCMDND 84
AMR ++A GKR+RP+L + + + G + + +ACA+E+ HT SL+ DD+PCMDN
Sbjct: 42 AMREGVMAPGKRIRPLLMLLAARDLRYQGSMPTLLDLACAVELTHTASLMLDDMPCMDNA 101
Query: 85 DFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEG 144
+ RRG+PT HK FGE AILA LLS AF +AA + ++ +R +A+ EL +AVG +G
Sbjct: 102 ELRRGQPTTHKKFGESVAILASVGLLSKAFGLIAA-TGDLPGERRAQAVNELSTAVGVQG 160
Query: 145 LVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARC 204
LV G+ D++ D + + + + + KT L A + I + E + +A
Sbjct: 161 LVLGQFRDLNDAALDRTPDAILSTNHLKTGILFSAMLQIVAIASASSPSTRETLHAFALD 220
Query: 205 IGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARK 251
G FQ++DD+ D E GK KD + K+T +G + AR+
Sbjct: 221 FGQAFQLLDDLRD---DHPETGKDRNKD--AGKSTLVNRLGADAARQ 262
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 119/220 (54%), Gaps = 9/220 (4%)
Query: 23 KIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMD 82
K++EA + +GGKR+RP++ S +L GG A A+E++HT +LVHDD+ MD
Sbjct: 29 KLYEASYHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAAIEVLHTFTLVHDDI--MD 86
Query: 83 NDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGS 142
D+ RRG PT H +G AILAGD L + AF+ + + + +++A ++
Sbjct: 87 QDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQLLTQALRGLPSETIIKAFDIFTRSI-- 144
Query: 143 EGLVAGEIMDIDSEGKD-VSLNELENIHL--HKTAKLLEAAVVCGVIIGGGNMIEVERVR 199
++ E +D E +D + + E E + + KTA L A+ G +I G N +V +
Sbjct: 145 --IIISEGQAVDMEFEDRIDIKEQEYLDMISRKTAALFSASSSIGALIAGANDNDVRLMS 202
Query: 200 KYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
+ +G+ FQ+VDDIL +T KELGK D+ K T
Sbjct: 203 DFGTNLGIAFQIVDDILGLTADEKELGKPVFSDIREGKKT 242
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 133/249 (53%), Gaps = 23/249 (9%)
Query: 8 VNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVG--------------- 52
VN+A+ E + ++ P +++ A RY L AGGKR+RP + + + E +
Sbjct: 18 VNEAVSEQLPVQKPERLYSASRYLLDAGGKRLRPTILLLAAESLADVEPLSADYRQFPSL 77
Query: 53 -GDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLS 111
GDE + A ++E+I + +L+HDD+ D+ RRG P H+ + +TAILAGD L S
Sbjct: 78 PGDEVDVLSAAVSIEVIQSFTLIHDDIMDDDD--LRRGVPAVHREYDLETAILAGDTLYS 135
Query: 112 LAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK-DVSLNELENIHL 170
AFE++ T +R V A+ EL + + G+ +D+D E + DV+ E +
Sbjct: 136 KAFEYML--DTGAPAERSVEALDELATTCTE--ICEGQALDVDFENRSDVTTEEYLEMVE 191
Query: 171 HKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAG 230
KTA L AA I+ G + VE + Y IG FQ+ DD+LD+T S ELGK G
Sbjct: 192 FKTAVLYAAAASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTAPSDELGKQRG 251
Query: 231 KDLVSDKAT 239
DLV +K T
Sbjct: 252 SDLVENKRT 260
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 121/208 (58%), Gaps = 4/208 (1%)
Query: 27 AMRYSLLAGGKRVRPVLCIASCELVGGDES--SAMPVACALEMIHTMSLVHDDLPCMDND 84
AMR LA GKR+RP+L + + +G S + +ACA+EM+H SL+ DD+PCMD+
Sbjct: 43 AMREGALAPGKRIRPMLLLLTARDLGCAVSHDGLLDLACAVEMVHAASLILDDMPCMDDA 102
Query: 85 DFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEG 144
RRG+PT H +GE AILA ALLS AF V A + ++P RA++EL +A+G +G
Sbjct: 103 KLRRGRPTIHSHYGEHVAILAAVALLSKAFG-VIADADGLTPLAKNRAVSELSNAIGMQG 161
Query: 145 LVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARC 204
LV G+ D+ K S + + KT+ L A++ I+ + + + +++
Sbjct: 162 LVQGQFKDLSEGDKPRSAEAILMTNHFKTSTLFCASMQMASIVANASSEARDCLHRFSLD 221
Query: 205 IGLLFQVVDDILD-VTKSSKELGKTAGK 231
+G FQ++DD+ D +T + K+ + AGK
Sbjct: 222 LGQAFQLLDDLTDGMTDTGKDSNQDAGK 249
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 140/253 (55%), Gaps = 7/253 (2%)
Query: 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMP 60
+ +++ V+ A+DE + + P ++++A RY + AGGKR+RP + I + E VG + S +P
Sbjct: 10 IKNRSSHVDAAIDELLPVTRPEELYKASRYLVDAGGKRLRPAVLILAAEAVGSNLRSVLP 69
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
A A+E++H +L+H MD DD RRG P H +GE AILAGD L S AFE ++
Sbjct: 70 AAVAVELVHNFTLIH--DDIMDRDDIRRGMPAVHVKWGEAGAILAGDTLYSKAFEILSKV 127
Query: 121 STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEG-KDVSLNELENIHLHKTAKLLEA 179
E P RV++ + L + G+ +D+D E K V+ +E + KT+ L A
Sbjct: 128 ENE--PVRVLKCMDVLSKTCTE--ICEGQWLDMDFETRKKVTESEYLEMVEKKTSVLYAA 183
Query: 180 AVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
A G ++GG + E + +Y R IG+ FQ+ DD+LD+T + LGK G DL+ K T
Sbjct: 184 AAKIGALLGGASDEVAEALSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYT 243
Query: 240 YPKLMGIENARKF 252
+ E K
Sbjct: 244 LIVINAFEKGVKL 256
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 114/215 (53%), Gaps = 25/215 (11%)
Query: 36 GKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHK 95
GK +RP L + E G D SA+P A ++E++H SLVHDDL MD D+ RR +PT
Sbjct: 72 GKAIRPALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDL--MDRDEHRRHRPTVWA 129
Query: 96 VFGEDTAILAGDALLSLAFE--------HVAAKSTEISPDRVVRAIAELGSAVGSEGLVA 147
++G+ A+LAGDA+LSLA E HV A +RAI+E + L+
Sbjct: 130 LWGDAMALLAGDAMLSLAHEVLLDCDSPHVGA---------ALRAISE-----ATRELIR 175
Query: 148 GEIMDIDSEGK-DVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIG 206
G+ D E + DV+L+E + KTA L+ A+ G ++ G E + Y R IG
Sbjct: 176 GQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIG 235
Query: 207 LLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYP 241
L FQ+VDD+L + + GK DL S K T P
Sbjct: 236 LAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLP 270
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 114/215 (53%), Gaps = 25/215 (11%)
Query: 36 GKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHK 95
GK +RP L + E G D SA+P A ++E++H SLVHDDL MD D+ RR +PT
Sbjct: 72 GKAIRPALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDL--MDRDEHRRHRPTVWA 129
Query: 96 VFGEDTAILAGDALLSLAFE--------HVAAKSTEISPDRVVRAIAELGSAVGSEGLVA 147
++G+ A+LAGDA+LSLA E HV A +RAI+E + L+
Sbjct: 130 LWGDAMALLAGDAMLSLAHEVLLDCDSPHVGA---------ALRAISE-----ATRELIR 175
Query: 148 GEIMDIDSEGK-DVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIG 206
G+ D E + DV+L+E + KTA L+ A+ G ++ G E + Y R IG
Sbjct: 176 GQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIG 235
Query: 207 LLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYP 241
L FQ+VDD+L + + GK DL S K T P
Sbjct: 236 LAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLP 270
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 135/252 (53%), Gaps = 15/252 (5%)
Query: 12 LDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTM 71
L+ VQL I++ Y + GGKR+RP++ + + VG + ++ + +A +E IHT
Sbjct: 25 LNSDVQL-----INQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTA 79
Query: 72 SLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVR 131
+L+HDD+ +D D RRGK T + FG ++L GD + + AF+ + T + +V+
Sbjct: 80 TLLHDDV--VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMM----TSLGSLKVLE 133
Query: 132 AIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGN 191
++E + + +EG V ++M+++ D++ + KTA+L EAA C I+ G
Sbjct: 134 VMSEAVNVI-AEGEVL-QLMNVND--PDITEENYMRVIYSKTARLFEAAAQCSGILAGCT 189
Query: 192 MIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARK 251
E + ++ Y R +G FQ++DD+LD ++LGK G DL K T P L + +
Sbjct: 190 PEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTP 249
Query: 252 FACDLLAQATEE 263
++ A E+
Sbjct: 250 EQAQMIRTAIEQ 261
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 135/252 (53%), Gaps = 15/252 (5%)
Query: 12 LDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTM 71
L+ VQL I++ Y + GGKR+RP++ + + VG + ++ + +A +E IHT
Sbjct: 25 LNSDVQL-----INQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTA 79
Query: 72 SLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVR 131
+L+HDD+ +D D RRGK T + FG ++L GD + + AF+ + T + +V+
Sbjct: 80 TLLHDDV--VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMM----TSLGSLKVLE 133
Query: 132 AIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGN 191
++E + + +EG V ++M+++ D++ + KTA+L EAA C I+ G
Sbjct: 134 VMSEAVNVI-AEGEVL-QLMNVND--PDITEENYMRVIYSKTARLFEAAAQCSGILAGCT 189
Query: 192 MIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARK 251
E + ++ Y R +G FQ++DD+LD ++LGK G DL K T P L + +
Sbjct: 190 PEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTP 249
Query: 252 FACDLLAQATEE 263
++ A E+
Sbjct: 250 EQAQMIRTAIEQ 261
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 132/235 (56%), Gaps = 12/235 (5%)
Query: 30 YSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRG 89
Y + GGKR+RP++ + + +G + S+++ A +E IHT SL+HDD+ +D D RRG
Sbjct: 44 YIVQGGGKRIRPLIAVLAARSLGFEGSNSITCATFVEFIHTASLLHDDV--VDESDMRRG 101
Query: 90 KPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGE 149
+ T + FG ++L GD + + AF+ VA ++ +++ +A+ + V +EG V +
Sbjct: 102 RATANAEFGNAASVLVGDFIYTRAFQLVA----QLESLKILSIMAD-ATNVLAEGEVQ-Q 155
Query: 150 IMDI-DSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLL 208
+M++ D E + N + I+ KTA+L E A I+ GG + + ++ Y R +G
Sbjct: 156 LMNVNDPETSEA--NYMRVIY-SKTARLFEVAGQAAAIVAGGTEAQEKALQDYGRYLGTA 212
Query: 209 FQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEE 263
FQ+VDD+LD + +++ LGK G DL K T P L + + L+ +A E+
Sbjct: 213 FQLVDDVLDYSANTQALGKNVGDDLAEGKPTLPLLHAMRHGNAQQAALIREAIEQ 267
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 134/253 (52%), Gaps = 19/253 (7%)
Query: 7 RVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCI----ASCELVGGDESSA--MP 60
++N L V +P + A + AGGKR+RP L A+ EL G E +
Sbjct: 94 KLNNNLKSLVGAENPVLVSAAEQI-FGAGGKRLRPALVFLVSRATAELAGLLELTTEHQR 152
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
+A +EMIHT SL+HDD+ +D+ RRGK T H+++G A+LAGD + + + +A
Sbjct: 153 LAEIIEMIHTASLIHDDV--IDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLA-- 208
Query: 121 STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK-DVSLNELENIHLHKTAKLLEA 179
+ V++ I+++ + +GEI + DV+L++ +KTA LL +
Sbjct: 209 --NLENIEVIKLISQV-----IKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLAS 261
Query: 180 AVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
+ I G + E++ +Y R +GL FQVVDDILD T+S+++LGK AG DL T
Sbjct: 262 STRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLT 321
Query: 240 YPKLMGIENARKF 252
P + +++ K
Sbjct: 322 APVIFALQDEPKL 334
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 133/249 (53%), Gaps = 19/249 (7%)
Query: 7 RVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCI----ASCELVGGDESSA--MP 60
++N L V +P + A + AGGKR+RP L A+ EL G E +
Sbjct: 63 KLNNNLKSLVGAENPVLVSAAEQI-FGAGGKRLRPALVFLVSRATAELAGLLELTTEHQR 121
Query: 61 VACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAK 120
+A +EMIHT SL+HDD+ +D+ RRGK T H+++G A+LAGD + + + +A
Sbjct: 122 LAEIIEMIHTASLIHDDV--IDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLA-- 177
Query: 121 STEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK-DVSLNELENIHLHKTAKLLEA 179
+ V++ I+++ + +GEI + D++L++ +KTA L+ A
Sbjct: 178 --NLENIEVIKLISQV-----IKDFASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAA 230
Query: 180 AVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
+ I G + E++ +Y R +GL FQVVDDILD T+S+++LGK AG DL T
Sbjct: 231 STRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLT 290
Query: 240 YPKLMGIEN 248
P + +++
Sbjct: 291 APVIFALQD 299
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 19/250 (7%)
Query: 6 KRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCI----ASCELVGGDESSA--M 59
+R+N L V +P I A + AGGKR+RP L A+ EL G E +
Sbjct: 107 QRLNDNLLSIVGAENPVLISAAEQI-FSAGGKRMRPGLVFLVSRATAELAGLKELTVEHR 165
Query: 60 PVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAA 119
+ +EMIHT SL+HDD+ +D D RRG+ T H++FG A+LAGD + + A ++A
Sbjct: 166 RLGEIIEMIHTASLIHDDV--LDESDMRRGRETVHELFGTRVAVLAGDFMFAQASWYLA- 222
Query: 120 KSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK-DVSLNELENIHLHKTAKLLE 178
+ V++ I+++ + +GEI S DV L++ +KTA L+
Sbjct: 223 ---NLENLEVIKLISQV-----IKDFASGEIKQASSLFDCDVKLDDYMLKSYYKTASLVA 274
Query: 179 AAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKA 238
A+ I E++ ++ + +GL FQVVDDILD T+S+++LGK A DL
Sbjct: 275 ASTKGAAIFSKVESKVAEQMYQFGKNLGLSFQVVDDILDFTQSTEQLGKPAANDLAKGNI 334
Query: 239 TYPKLMGIEN 248
T P + +EN
Sbjct: 335 TAPVIFALEN 344
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 18/221 (8%)
Query: 34 AGGKRVRPVLCI----ASCELVGGDESSA--MPVACALEMIHTMSLVHDDLPCMDNDDFR 87
AGGKR+RP L A+ EL G E + +A +EMIHT SL+HDD+ +D D R
Sbjct: 123 AGGKRMRPGLVFLVSHATAELAGLKELTTEHRRLAEIIEMIHTASLIHDDV--LDESDMR 180
Query: 88 RGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVA 147
RGK T H++FG A+LAGD + + A ++A + V++ I+++ + +
Sbjct: 181 RGKETVHELFGTRVAVLAGDFMFAQASWYLA----NLENLEVIKLISQV-----IKDFAS 231
Query: 148 GEIMDIDSEGK-DVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIG 206
GEI S D L+E +KTA L+ A+ I E++ ++ + +G
Sbjct: 232 GEIKQASSLFDCDTKLDEYLLKSFYKTASLVAASTKGAAIFSRVEPDVTEQMYEFGKNLG 291
Query: 207 LLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE 247
L FQ+VDDILD T+S+++LGK AG DL T P + +E
Sbjct: 292 LSFQIVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALE 332
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 117/244 (47%), Gaps = 13/244 (5%)
Query: 8 VNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEM 67
V + L+ VQ + + EA + L AGGKR+RPV + + D VA ALE+
Sbjct: 17 VEEELERAVQSEY-GPLGEAALHLLQAGGKRIRPVFVLLAARFGQYDLERMKHVAVALEL 75
Query: 68 IHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPD 127
IH SLVHDD+ +D+ D RRG+PT + A+ GD L + + E +A +
Sbjct: 76 IHMASLVHDDV--IDDADLRRGRPTIKAKWSNRFAMYTGDYLFARSLERMAELGNPRAHQ 133
Query: 128 RVVRAIAELGSAVGSEGLVAGEIMDI-DSEGKDVSLNELENIHLHKTAKLLEAAVVCGVI 186
+ + I E+ GEI I D D L KTA L+ A+ G +
Sbjct: 134 VLAKTIVEV---------CRGEIEQIKDKYRFDQPLRTYLRRIRRKTALLIAASCQLGAL 184
Query: 187 IGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGI 246
G V+R+ + +G+ FQ+ DDILD T + ++LGK AG DL+ T P L +
Sbjct: 185 AAGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPAGSDLLQGNVTLPVLYAL 244
Query: 247 ENAR 250
+ R
Sbjct: 245 SDER 248
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 122/259 (47%), Gaps = 13/259 (5%)
Query: 8 VNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEM 67
V K L E +Q I++A + L +GGKRVRP+ + S L + + A +LE+
Sbjct: 17 VEKRLYECIQ-SDSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLEL 75
Query: 68 IHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPD 127
+H SLVHDD +DN D RRG + H F +DTAI G LL+ A +++A +
Sbjct: 76 VHMASLVHDDY--IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQ 133
Query: 128 RVVRAIAELGSAVGSEGLVAGEIMDI-DSEGKDVSLNELENIHLHKTAKLLEAAVVCGVI 186
+ I E+ GE + D VS KTA L+EA+ G +
Sbjct: 134 IFSKTILEV---------CFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGAL 184
Query: 187 IGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGI 246
+ ++++ CIG+ +Q++DDILD T LGK G D+ + TYP + I
Sbjct: 185 SSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAI 244
Query: 247 ENARKFACDLLAQATEELA 265
N ++ D L + L
Sbjct: 245 ANLKEQDDDKLEAVVKHLT 263
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 124/229 (54%), Gaps = 20/229 (8%)
Query: 34 AGGKRVRPVLCIASCELVG-GDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPT 92
AGGKR+RP++C+ + G + A +A +EM+HT +LVHDD+ +D RRG+PT
Sbjct: 45 AGGKRMRPIMCLLAAYACGETNLKHAQKLAAIIEMLHTATLVHDDV--VDESGLRRGRPT 102
Query: 93 NHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMD 152
+ + TA+L GD L++ AF+ + + D ++ + + + G+ + GE++
Sbjct: 103 ANATWNNQTAVLVGDFLIARAFDLL------VDLDNMI-LLKDFST--GTCEIAEGEVLQ 153
Query: 153 IDSEGKDVSLNELENIHLH----KTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLL 208
+ ++ + + E+I+L KT++L E A I+ G E +R++A G
Sbjct: 154 LQAQHQP---DTTEDIYLQIIHGKTSRLFELATEGAAILAGKPEYR-EPLRRFAGHFGNA 209
Query: 209 FQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLL 257
FQ++DDILD T + LGK G DL+ K T P + ++N + DL+
Sbjct: 210 FQIIDDILDYTSDADTLGKNIGDDLMEGKPTLPLIAAMQNTQGEQRDLI 258
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,663,277
Number of Sequences: 539616
Number of extensions: 4124880
Number of successful extensions: 12581
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 12334
Number of HSP's gapped (non-prelim): 122
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)