Query 038404
Match_columns 287
No_of_seqs 213 out of 1085
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 18:28:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f62_A Geranyltranstransferase 100.0 7.9E-74 2.7E-78 522.2 32.1 283 3-287 11-295 (317)
2 3lsn_A Geranyltranstransferase 100.0 1.7E-73 5.8E-78 518.3 32.6 284 3-287 9-296 (304)
3 3ts7_A Geranyltranstransferase 100.0 2E-73 6.8E-78 521.0 32.1 284 3-287 15-302 (324)
4 3p8l_A Geranyltranstransferase 100.0 4.6E-73 1.6E-77 514.8 30.5 281 3-285 16-302 (302)
5 3uca_A Geranyltranstransferase 100.0 4.5E-73 1.5E-77 518.7 28.9 283 2-287 38-324 (324)
6 3lom_A Geranyltranstransferase 100.0 6.9E-73 2.4E-77 515.9 28.6 283 2-286 14-302 (313)
7 3p8r_A Geranyltranstransferase 100.0 1.6E-73 5.5E-78 518.4 24.1 285 2-287 14-302 (302)
8 2h8o_A Geranyltranstransferase 100.0 3.3E-72 1.1E-76 515.8 31.2 284 3-287 45-335 (335)
9 3m0g_A Farnesyl diphosphate sy 100.0 1.2E-72 4.2E-77 511.2 26.8 280 2-287 8-289 (297)
10 1rqj_A Geranyltranstransferase 100.0 7E-72 2.4E-76 507.9 30.7 285 3-287 9-299 (299)
11 3pde_A Farnesyl-diphosphate sy 100.0 7.6E-73 2.6E-77 514.1 24.1 284 2-287 13-300 (309)
12 1rtr_A Geranyltranstransferase 100.0 1.1E-71 3.6E-76 506.7 30.2 283 4-287 9-293 (301)
13 3llw_A Geranyltranstransferase 100.0 3.1E-70 1.1E-74 498.0 28.6 275 8-286 18-304 (311)
14 3npk_A Geranyltranstransferase 100.0 1.1E-68 3.8E-73 483.7 29.3 277 4-284 5-284 (291)
15 2ftz_A Geranyltranstransferase 100.0 8.3E-69 2.8E-73 483.2 27.0 268 4-285 14-284 (284)
16 3oyr_A Trans-isoprenyl diphosp 100.0 1.2E-67 4.1E-72 487.6 30.4 274 1-286 31-344 (345)
17 3mzv_A Decaprenyl diphosphate 100.0 6.6E-67 2.3E-71 482.5 32.8 276 1-287 18-333 (341)
18 2j1p_A Geranylgeranyl pyrophos 100.0 4.8E-67 1.6E-71 474.7 30.3 271 3-287 19-293 (293)
19 1wy0_A Geranylgeranyl pyrophos 100.0 3.1E-67 1E-71 486.2 28.8 280 2-287 12-342 (342)
20 3rmg_A Octaprenyl-diphosphate 100.0 1.5E-66 5.2E-71 479.1 27.8 273 2-287 14-326 (334)
21 3lmd_A Geranylgeranyl pyrophos 100.0 1.3E-66 4.4E-71 482.6 26.5 273 2-287 41-352 (360)
22 4dhd_A Polyprenyl synthetase; 100.0 2.7E-66 9.1E-71 481.3 28.0 273 3-287 12-336 (358)
23 3pko_A Geranylgeranyl pyrophos 100.0 4.2E-66 1.4E-70 476.2 27.0 275 1-287 21-334 (334)
24 3aqb_B Component B of hexapren 100.0 1.8E-65 6.1E-70 471.1 28.5 274 2-287 11-325 (325)
25 3nf2_A Putative polyprenyl syn 100.0 2.4E-65 8.1E-70 473.7 29.2 275 3-286 11-343 (352)
26 3apz_A Geranyl diphosphate syn 100.0 2.6E-65 9E-70 474.2 23.7 274 2-287 15-348 (348)
27 3ipi_A Geranyltranstransferase 100.0 5.2E-65 1.8E-69 460.8 24.9 264 5-286 11-283 (295)
28 1wmw_A Geranylgeranyl diphosph 100.0 5.1E-64 1.8E-68 462.3 28.1 273 4-287 8-330 (330)
29 3lk5_A Geranylgeranyl pyrophos 100.0 1.5E-62 5.2E-67 458.8 28.3 276 5-286 22-372 (380)
30 3tc1_A Octaprenyl pyrophosphat 100.0 1.1E-62 3.8E-67 449.6 24.9 264 3-283 4-307 (315)
31 1v4e_A Octoprenyl-diphosphate 100.0 1.3E-62 4.6E-67 446.5 24.0 231 2-251 10-241 (299)
32 2e8v_A Geranylgeranyl pyrophos 100.0 3.1E-62 1.1E-66 451.8 22.0 236 7-249 9-250 (340)
33 2q80_A Geranylgeranyl pyrophos 100.0 3.1E-62 1E-66 444.7 21.2 258 12-287 2-297 (301)
34 2azj_A Geranylgeranyl pyrophos 100.0 2.1E-61 7.3E-66 436.2 24.3 257 3-286 17-280 (289)
35 2qis_A Farnesyl pyrophosphate 100.0 3.3E-61 1.1E-65 449.8 24.5 275 5-287 43-374 (374)
36 1uby_A FPS, farnesyl diphospha 100.0 2.3E-60 7.9E-65 443.0 23.4 274 6-287 37-367 (367)
37 1yhl_A Farnesyl pyrophosphate 100.0 2.5E-60 8.4E-65 443.0 23.2 259 21-287 33-362 (362)
38 2ihi_A Pyrophosphate synthase; 100.0 8.5E-60 2.9E-64 442.0 25.7 257 22-286 66-395 (395)
39 3dyh_A Farnesyl pyrophosphate 100.0 3E-60 1E-64 445.0 21.7 275 5-287 33-390 (390)
40 3mav_A Farnesyl pyrophosphate 100.0 4.7E-59 1.6E-63 438.7 22.8 251 24-285 68-390 (395)
41 3kra_B Geranyl diphosphate syn 100.0 3.7E-58 1.3E-62 412.3 24.6 248 4-279 8-258 (274)
42 2her_A Fragment, farnesyl pyro 100.0 5.6E-59 1.9E-63 431.9 18.3 268 5-285 32-354 (368)
43 2q58_A Fragment, farnesyl pyro 100.0 3.6E-58 1.2E-62 428.7 17.3 255 22-286 58-359 (368)
44 3qkc_B Geranyl diphosphate syn 100.0 9.3E-56 3.2E-60 396.8 26.5 244 5-282 14-259 (273)
45 4fp4_A Polyprenyl synthetase; 100.0 8.2E-57 2.8E-61 403.6 14.9 213 2-236 11-226 (285)
46 4hd1_A Squalene synthase HPNC; 96.3 0.28 9.6E-06 43.4 17.2 121 143-272 107-239 (294)
47 3vj8_A Squalene synthase; farn 96.1 0.35 1.2E-05 43.9 17.1 113 144-270 122-256 (343)
48 3acx_A Dehydrosqualene synthas 95.2 0.16 5.6E-06 44.9 11.2 111 144-272 112-244 (293)
49 3kb9_A EPI-isozizaene synthase 93.9 0.68 2.3E-05 42.4 12.3 111 143-265 187-309 (382)
50 1ps1_A Pentalenene synthase; a 91.3 7.4 0.00025 34.4 15.3 111 143-266 144-268 (337)
51 4fp4_A Polyprenyl synthetase; 89.5 2.5 8.6E-05 37.2 10.2 66 192-269 67-132 (285)
52 1yyq_A Trichodiene synthase; t 88.3 15 0.0005 33.5 15.9 49 32-85 56-107 (374)
53 3rmg_A Octaprenyl-diphosphate 87.2 4.5 0.00016 36.3 10.6 67 189-267 63-129 (334)
54 3mzv_A Decaprenyl diphosphate 86.8 3.9 0.00013 36.9 10.0 72 184-267 64-135 (341)
55 3nf2_A Putative polyprenyl syn 86.5 3.1 0.00011 37.7 9.2 74 183-268 64-137 (352)
56 2ftz_A Geranyltranstransferase 86.1 6.1 0.00021 34.6 10.6 68 189-268 62-131 (284)
57 3m0g_A Farnesyl diphosphate sy 85.3 6.4 0.00022 34.7 10.4 71 185-267 53-125 (297)
58 2q80_A Geranylgeranyl pyrophos 84.9 7.4 0.00025 34.3 10.6 67 189-267 41-107 (301)
59 3lmd_A Geranylgeranyl pyrophos 84.9 4.3 0.00015 36.9 9.3 73 184-268 85-158 (360)
60 1rtr_A Geranyltranstransferase 84.8 3.2 0.00011 36.8 8.2 73 47-121 189-273 (301)
61 2azj_A Geranylgeranyl pyrophos 84.3 5.6 0.00019 35.0 9.5 71 186-268 62-133 (289)
62 3pko_A Geranylgeranyl pyrophos 84.1 7.6 0.00026 34.8 10.5 69 187-267 69-138 (334)
63 4f62_A Geranyltranstransferase 84.1 8.5 0.00029 34.3 10.7 67 189-267 61-129 (317)
64 1wy0_A Geranylgeranyl pyrophos 82.2 6.2 0.00021 35.4 9.1 68 188-267 61-128 (342)
65 2e8v_A Geranylgeranyl pyrophos 81.8 10 0.00035 34.0 10.4 68 189-268 56-123 (340)
66 1wmw_A Geranylgeranyl diphosph 81.8 11 0.00038 33.6 10.6 71 185-267 51-121 (330)
67 3aqb_B Component B of hexapren 81.3 6.4 0.00022 35.1 8.9 72 184-267 55-126 (325)
68 3lsn_A Geranyltranstransferase 81.1 3.9 0.00013 36.3 7.2 73 47-121 193-278 (304)
69 3lom_A Geranyltranstransferase 80.5 6 0.0002 35.2 8.3 66 54-121 208-285 (313)
70 1rqj_A Geranyltranstransferase 80.3 17 0.00057 32.0 11.1 71 185-267 56-128 (299)
71 1v4e_A Octoprenyl-diphosphate 80.1 9.2 0.00031 33.7 9.3 63 193-267 61-123 (299)
72 3p8l_A Geranyltranstransferase 80.0 4.2 0.00014 36.1 7.1 72 47-120 197-280 (302)
73 3ipi_A Geranyltranstransferase 79.4 2.5 8.7E-05 37.3 5.4 62 193-266 62-123 (295)
74 3llw_A Geranyltranstransferase 79.4 8.5 0.00029 34.2 8.9 62 193-266 74-137 (311)
75 3uca_A Geranyltranstransferase 79.3 7.4 0.00025 34.8 8.5 73 47-121 222-306 (324)
76 4dhd_A Polyprenyl synthetase; 79.2 6.4 0.00022 35.7 8.2 62 192-265 64-125 (358)
77 1di1_A Aristolochene synthase; 78.1 32 0.0011 29.5 14.9 102 160-265 152-261 (300)
78 3pde_A Farnesyl-diphosphate sy 77.8 15 0.00053 32.5 10.1 60 196-267 73-134 (309)
79 3ts7_A Geranyltranstransferase 76.8 11 0.00038 33.6 8.9 67 189-267 66-134 (324)
80 2h8o_A Geranyltranstransferase 76.4 17 0.00057 32.6 10.0 71 185-267 97-169 (335)
81 2j1p_A Geranylgeranyl pyrophos 76.2 23 0.00079 30.9 10.7 69 187-267 66-136 (293)
82 3oyr_A Trans-isoprenyl diphosp 75.6 5.3 0.00018 36.0 6.5 72 184-267 76-147 (345)
83 3p8r_A Geranyltranstransferase 73.8 6.1 0.00021 35.0 6.3 66 54-121 207-284 (302)
84 3npk_A Geranyltranstransferase 73.1 27 0.00092 30.6 10.3 64 192-267 59-124 (291)
85 2q58_A Fragment, farnesyl pyro 72.8 7.9 0.00027 35.2 7.0 55 201-267 103-157 (368)
86 3g4d_A (+)-delta-cadinene synt 71.0 45 0.0015 32.0 12.0 111 143-266 376-500 (554)
87 3v1v_A 2-MIB synthase, 2-methy 70.4 16 0.00055 33.9 8.6 77 143-221 265-346 (433)
88 3n0f_A Isoprene synthase; terp 69.9 55 0.0019 31.4 12.4 111 143-266 374-498 (555)
89 3kra_B Geranyl diphosphate syn 69.3 11 0.00037 32.8 6.8 72 185-267 52-123 (274)
90 3lk5_A Geranylgeranyl pyrophos 68.1 31 0.0011 31.4 9.9 64 192-267 87-166 (380)
91 3tc1_A Octaprenyl pyrophosphat 67.1 17 0.00059 32.2 7.8 60 197-268 61-120 (315)
92 3bny_A Aristolochene synthase; 66.8 63 0.0021 27.9 15.1 61 160-221 166-227 (320)
93 3m00_A Aristolochene synthase; 62.9 1.1E+02 0.0037 29.3 13.9 111 143-266 372-495 (550)
94 3apz_A Geranyl diphosphate syn 61.2 37 0.0013 30.3 8.9 58 198-267 92-149 (348)
95 2her_A Fragment, farnesyl pyro 57.0 23 0.0008 32.1 6.8 62 193-266 95-159 (368)
96 3qkc_B Geranyl diphosphate syn 56.8 28 0.00097 30.0 7.1 70 185-267 57-126 (273)
97 2ihi_A Pyrophosphate synthase; 54.6 41 0.0014 30.8 8.1 55 200-266 112-168 (395)
98 2ong_A 4S-limonene synthase; m 46.5 2E+02 0.0067 27.3 15.0 110 144-266 366-489 (543)
99 1n1b_A (+)-bornyl diphosphate 45.0 65 0.0022 30.8 8.2 109 144-266 372-496 (549)
100 2qis_A Farnesyl pyrophosphate 38.5 75 0.0026 28.7 7.2 34 200-245 111-144 (374)
101 1yhl_A Farnesyl pyrophosphate 34.8 1.1E+02 0.0037 27.4 7.6 56 200-267 85-142 (362)
102 2j5c_A 1,8-cineole synthase; t 34.6 2.6E+02 0.0087 26.7 10.5 108 144-265 393-515 (569)
103 3p5p_A Taxadiene synthase; cla 33.7 2.1E+02 0.0073 28.4 10.1 110 144-266 577-701 (764)
104 3aqb_A Component A of hexapren 32.7 55 0.0019 25.4 4.3 52 66-140 52-103 (147)
105 3s9v_A Abietadiene synthase, c 32.0 2.4E+02 0.0081 28.2 10.1 110 144-266 608-732 (785)
106 3sdr_A Alpha-bisabolene syntha 30.4 1.5E+02 0.0052 29.8 8.4 110 143-266 635-763 (817)
107 3mav_A Farnesyl pyrophosphate 23.9 3.6E+02 0.012 24.2 9.2 46 192-249 101-149 (395)
108 1v54_K IHQ, cytochrome C oxida 22.5 54 0.0018 21.0 2.2 25 87-113 3-27 (56)
109 1uby_A FPS, farnesyl diphospha 20.7 67 0.0023 28.9 3.4 51 47-99 227-289 (367)
110 4err_A Autotransporter adhesin 20.3 2.4E+02 0.0081 20.0 8.2 29 192-220 8-37 (90)
No 1
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=7.9e-74 Score=522.21 Aligned_cols=283 Identities=45% Similarity=0.714 Sum_probs=239.5
Q ss_pred hHHHHHHHHHhHHhccC-CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCC
Q 038404 3 SKAKRVNKALDETVQLR-HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCM 81 (287)
Q Consensus 3 ~~~~~i~~~l~~~~~~~-~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~ 81 (287)
+..+.|++.|.+.++.. .|+.+.++++|.+..||||+||.+|+++++++|++++.+.++|++|||||+|||||||||||
T Consensus 11 ~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH~aSLIHDDip~m 90 (317)
T 4f62_A 11 YTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSLIHDDLPAM 90 (317)
T ss_dssp HHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcccc
Confidence 45678999999999863 26789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCC
Q 038404 82 DNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVS 161 (287)
Q Consensus 82 D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~ 161 (287)
|+|++|||+||+|.+||+++|||+||+|++.||+.+++. .+.++....+++..+++++|..+++.||.+|+.+.+..++
T Consensus 91 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~-~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t 169 (317)
T 4f62_A 91 DNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNP-TSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNIS 169 (317)
T ss_dssp CC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSSCCC
T ss_pred cCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCCCCC
Confidence 999999999999999999999999999999999999985 3445666788899999988777899999999999876689
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcH
Q 038404 162 LNELENIHLHKTAKLLEAAVVCGVIIGG-GNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATY 240 (287)
Q Consensus 162 ~~~~~~i~~~KTg~l~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~ 240 (287)
+++|..|+++|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++||+||
T Consensus 170 ~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~ 249 (317)
T 4f62_A 170 LAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATY 249 (317)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcH
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccC
Q 038404 241 PKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287 (287)
Q Consensus 241 p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 287 (287)
|+++++++|++.++++.++|++.|+.||. .++.|.++++|+++|++
T Consensus 250 p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 250 PKLLGLDGAKALVVRLHEQAIAQISEFGD-KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999975 67999999999999974
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.7e-73 Score=518.32 Aligned_cols=284 Identities=45% Similarity=0.741 Sum_probs=251.8
Q ss_pred hHHHHHHHHHhHHhccCC--cHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCC
Q 038404 3 SKAKRVNKALDETVQLRH--PAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPC 80 (287)
Q Consensus 3 ~~~~~i~~~l~~~~~~~~--~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~ 80 (287)
...+.|++.|.+.++... |+.+.++++|.+..||||+||.+|+++++++|++++.+.++|++|||||+|||||||||+
T Consensus 9 ~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDip~ 88 (304)
T 3lsn_A 9 SSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPA 88 (304)
T ss_dssp HHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCccc
Confidence 456789999999998743 678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHccc-CCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCC
Q 038404 81 MDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKS-TEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD 159 (287)
Q Consensus 81 ~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~ 159 (287)
||+|++|||+||+|++||++.|||+||+|++.||+.+++.. .+.++....+++..+++++|..+++.||.+|+.+....
T Consensus 89 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~~~~ 168 (304)
T 3lsn_A 89 MDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGLK 168 (304)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCC
T ss_pred ccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHccCCC
Confidence 99999999999999999999999999999999999999863 23456667788899999887667999999999998767
Q ss_pred CCHHHHHHHHhcchHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCC
Q 038404 160 VSLNELENIHLHKTAKLLEAAVVCGVIIGGG-NMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKA 238 (287)
Q Consensus 160 ~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~-~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~ 238 (287)
+++++|..|+++|||+||++||++|++++|+ +++..+.+++||.++|+||||+||++|++++++.+||++|+|+++||+
T Consensus 169 ~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~ 248 (304)
T 3lsn_A 169 LDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKP 248 (304)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCc
Confidence 8999999999999999999999999999999 888899999999999999999999999999999999999999999999
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccC
Q 038404 239 TYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287 (287)
Q Consensus 239 T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 287 (287)
|||+++++++|++.++++.++|++.|+.||. .++.|.+|++|+++|.+
T Consensus 249 T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 249 TYPALLGLAAAKEYALELRDQALHALRPFDA-AAEPLRELARYIVERRS 296 (304)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHHHTTTSCG-GGHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999986 58999999999999974
No 3
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=2e-73 Score=520.99 Aligned_cols=284 Identities=43% Similarity=0.685 Sum_probs=251.3
Q ss_pred hHHHHHHHHHhHHhccC--CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCC
Q 038404 3 SKAKRVNKALDETVQLR--HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPC 80 (287)
Q Consensus 3 ~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~ 80 (287)
+..+.|++.|.+.++.. .|+.+.++++|.+..||||+||.+|+++++++|++.+.+.++|++|||||+|||||||||+
T Consensus 15 ~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~avEliH~aSLIHDDip~ 94 (324)
T 3ts7_A 15 SSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIHVYSLIHDDLPA 94 (324)
T ss_dssp HHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCGGGTHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 45678999999999763 4678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHccc-CCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCC
Q 038404 81 MDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKS-TEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD 159 (287)
Q Consensus 81 ~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~ 159 (287)
||+|++|||+||+|.+||+++|||+||+|++.||+.+++.. .+.++....+++..+++++|..+++.||.+|+.+....
T Consensus 95 mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~ 174 (324)
T 3ts7_A 95 MDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGKK 174 (324)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCC
T ss_pred ccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccCCC
Confidence 99999999999999999999999999999999999999863 23456667788999999887788999999999998767
Q ss_pred CCHHHHHHHHhcchHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCC
Q 038404 160 VSLNELENIHLHKTAKLLEAAVVCGVIIGG-GNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKA 238 (287)
Q Consensus 160 ~~~~~~~~i~~~KTg~l~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~ 238 (287)
+++++|..|+++|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++||+
T Consensus 175 ~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~ 254 (324)
T 3ts7_A 175 LDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKP 254 (324)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CC
T ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCc
Confidence 899999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccC
Q 038404 239 TYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287 (287)
Q Consensus 239 T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 287 (287)
|||+++++++|++.++++.++|++.|+.||.. ++.|.++++|+++|++
T Consensus 255 T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~-~~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 255 NYPALLGLSGAKEKAEEMHEAALESLAGFGPE-ADLLRELARFIIQRQS 302 (324)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHHTTTTCCGG-GHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999764 7899999999999974
No 4
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=4.6e-73 Score=514.75 Aligned_cols=281 Identities=38% Similarity=0.605 Sum_probs=247.0
Q ss_pred hHHHHHHHHHhHHhccC-CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCch-hHhHHHHHHHHHHHHHHHHhCCCC
Q 038404 3 SKAKRVNKALDETVQLR-HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDES-SAMPVACALEMIHTMSLVHDDLPC 80 (287)
Q Consensus 3 ~~~~~i~~~l~~~~~~~-~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~-~~~~~A~avEliH~asLihDDI~~ 80 (287)
++.+.|++.|.+.++.. .|+.+.++++|.+..||||+||.+|+++++++|++.+ .++++|++|||||+||||||||||
T Consensus 16 ~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~A~avEliH~asLIHDDIP~ 95 (302)
T 3p8l_A 16 QHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLPA 95 (302)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHCCchh
Confidence 45789999999999863 5678999999999999999999999999999999888 899999999999999999999999
Q ss_pred CCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC
Q 038404 81 MDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDV 160 (287)
Q Consensus 81 ~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~ 160 (287)
||+|++|||+||+|++||+++|||+||+|++.||+.+++. +.++....+++..+++++|..+++.||.+|+.+....+
T Consensus 96 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~--~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~ 173 (302)
T 3p8l_A 96 MDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLS--QLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKVSL 173 (302)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCC
T ss_pred ccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999984 34566677888889988877789999999999887668
Q ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcH
Q 038404 161 SLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATY 240 (287)
Q Consensus 161 ~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~ 240 (287)
++++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||++++|+++||+||
T Consensus 174 t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~ 253 (302)
T 3p8l_A 174 TLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTY 253 (302)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCH
T ss_pred CHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhccC----cccHHHHHHHHHHHHhc
Q 038404 241 PKLMGIENARKFACDLLAQATEELAYFE----VARAAPLYHLAYYIASR 285 (287)
Q Consensus 241 p~~~~l~~a~~~~~~~~~~A~~~L~~l~----~~~~~~L~~l~~~~~~R 285 (287)
|++++++.|++.++++.++|++.|+.|| +..++.|.+|++|+.+|
T Consensus 254 p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 254 PALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR 302 (302)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChhHHHHHHHHHHHhhC
Confidence 9999999999999999999999999995 45679999999999987
No 5
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=4.5e-73 Score=518.68 Aligned_cols=283 Identities=38% Similarity=0.643 Sum_probs=246.3
Q ss_pred chHHHHHHHHHhHHhccC--CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCC
Q 038404 2 TSKAKRVNKALDETVQLR--HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLP 79 (287)
Q Consensus 2 ~~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~ 79 (287)
+++++.|++.|.+.++.. .|+.+.++++|.+..||||+||.+|+++++++|++++.+.++|++||+||+|||||||||
T Consensus 38 ~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDIP 117 (324)
T 3uca_A 38 NSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLP 117 (324)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHHHHHTTCSCGGGGHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCch
Confidence 356789999999999863 367899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHH-HHHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 038404 80 CMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRV-VRAIAELGSAVGSEGLVAGEIMDIDSEGK 158 (287)
Q Consensus 80 ~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~ 158 (287)
|||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .++... .+++..+++++|..+++.||.+|+.+..+
T Consensus 118 ~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~--~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~ 195 (324)
T 3uca_A 118 CMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYS--LEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDK 195 (324)
T ss_dssp TTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSC
T ss_pred hccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCC
Confidence 999999999999999999999999999999999999999742 122234 67888888887777899999999999876
Q ss_pred -CCCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCC
Q 038404 159 -DVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDK 237 (287)
Q Consensus 159 -~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk 237 (287)
.+++++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++||
T Consensus 196 ~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK 275 (324)
T 3uca_A 196 EEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNK 275 (324)
T ss_dssp SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------
T ss_pred CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccC
Q 038404 238 ATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287 (287)
Q Consensus 238 ~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 287 (287)
+|||+++++++|++.++++.++|++.|+.||. .++.|.++++|+++|++
T Consensus 276 ~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 276 NNYITIFGLEECKKKCVNITEECIEILSSIKG-NTEPLKVLTMKLLERKF 324 (324)
T ss_dssp -CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSS-CCHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999975 45899999999999975
No 6
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=6.9e-73 Score=515.93 Aligned_cols=283 Identities=35% Similarity=0.528 Sum_probs=248.8
Q ss_pred chHHHHHHHHHhHHhccC--CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCC
Q 038404 2 TSKAKRVNKALDETVQLR--HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLP 79 (287)
Q Consensus 2 ~~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~ 79 (287)
++..+.|++.|.+.++.. .|+.+.++++|.+..||||+||.||+++++++|++++.+.++|++|||||+|||||||||
T Consensus 14 ~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDip 93 (313)
T 3lom_A 14 DKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLP 93 (313)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 345678999999999864 477899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCH-HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 038404 80 CMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISP-DRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK 158 (287)
Q Consensus 80 ~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~ 158 (287)
+||+|++|||+||+|++||++.|||+||+|++.||+.+++...+.++ ....+++..+++++|..+++.||.+|+.+..+
T Consensus 94 ~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~ 173 (313)
T 3lom_A 94 AMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAK 173 (313)
T ss_dssp TTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS
T ss_pred cccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCC
Confidence 99999999999999999999999999999999999999986433333 56778889999988777899999999999876
Q ss_pred -CCCHHHHHHHHhcchHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhc
Q 038404 159 -DVSLNELENIHLHKTAKLLEAAVVCGVIIGG--GNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVS 235 (287)
Q Consensus 159 -~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~ 235 (287)
.+++++|..|+++|||+||++||++ ++++| ++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++
T Consensus 174 ~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~ 252 (313)
T 3lom_A 174 SSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQAN 252 (313)
T ss_dssp SCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------
T ss_pred CCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhc
Confidence 5899999999999999999999999 99999 8999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhcc
Q 038404 236 DKATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQ 286 (287)
Q Consensus 236 gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~ 286 (287)
||+|||+++++++|++.++++.++|++.|+.||+ .++.|.+|++|+++|+
T Consensus 253 gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~~~~R~ 302 (313)
T 3lom_A 253 QKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGS-KAAALIELTKQLQNRS 302 (313)
T ss_dssp -CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGG-GGHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999976 4789999999999996
No 7
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1.6e-73 Score=518.37 Aligned_cols=285 Identities=39% Similarity=0.615 Sum_probs=234.7
Q ss_pred chHHHHHHHHHhHHhccC--CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCC
Q 038404 2 TSKAKRVNKALDETVQLR--HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLP 79 (287)
Q Consensus 2 ~~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~ 79 (287)
+..++.|++.|.+.++.. .|+.+.++++|.+..||||+||.+|+++++++|++++.+.++|++|||||+|||||||||
T Consensus 14 ~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDIp 93 (302)
T 3p8r_A 14 SSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLP 93 (302)
T ss_dssp HHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 456789999999999864 356799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHccc-CCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 038404 80 CMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKS-TEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK 158 (287)
Q Consensus 80 ~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~ 158 (287)
+||+|++|||+||+|.+||++.|||+||+|++.||+.+++.. .+.++....+++..+++++|..+++.||.+|+.+.+.
T Consensus 94 ~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~ 173 (302)
T 3p8r_A 94 AMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENR 173 (302)
T ss_dssp HHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS
T ss_pred cccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCC
Confidence 999999999999999999999999999999999999999853 1112334567888888887767899999999999876
Q ss_pred CCCHHHHHHHHhcchHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCC
Q 038404 159 DVSLNELENIHLHKTAKLLEAAVVCGVIIGG-GNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDK 237 (287)
Q Consensus 159 ~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk 237 (287)
.+++++|..|+++|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++||
T Consensus 174 ~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK 253 (302)
T 3p8r_A 174 LISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNK 253 (302)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------C
T ss_pred CCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCC
Confidence 6899999999999999999999999999999 788888999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccC
Q 038404 238 ATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287 (287)
Q Consensus 238 ~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 287 (287)
+|||+++++++|++.+++|.++|++.|+.||. .++.|.+|++|+++|++
T Consensus 254 ~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 254 STYPALLGLEGAQQKAHTLLQEALLALEAIPY-NTEHLEEFARYVVERKN 302 (302)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS-CTHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999976 47899999999999975
No 8
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=3.3e-72 Score=515.77 Aligned_cols=284 Identities=40% Similarity=0.616 Sum_probs=246.1
Q ss_pred hHHHHHHHHHhHHhccC-------CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHH
Q 038404 3 SKAKRVNKALDETVQLR-------HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVH 75 (287)
Q Consensus 3 ~~~~~i~~~l~~~~~~~-------~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLih 75 (287)
+..+.|++.|.+.++.. .|+.+.++++|.+..||||+||.||+++++++|++++.++++|++||+||+|||||
T Consensus 45 ~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIH 124 (335)
T 2h8o_A 45 ENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLHCYSLVH 124 (335)
T ss_dssp HHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999998762 46779999999999999999999999999999998888899999999999999999
Q ss_pred hCCCCCCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 038404 76 DDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDS 155 (287)
Q Consensus 76 DDI~~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~ 155 (287)
|||||||+|++|||+||+|.+||+++|||+||+|++.||+++++...+.+++...+++..+++++|..+++.||.+|+.+
T Consensus 125 DDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~ 204 (335)
T 2h8o_A 125 DDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAA 204 (335)
T ss_dssp HTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred CCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998532455667778889999988878899999999998
Q ss_pred cCCCCCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhc
Q 038404 156 EGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVS 235 (287)
Q Consensus 156 ~~~~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~ 235 (287)
....+++++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++
T Consensus 205 ~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~e 284 (335)
T 2h8o_A 205 EKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAAR 284 (335)
T ss_dssp HHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred cCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhc
Confidence 76568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccC
Q 038404 236 DKATYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287 (287)
Q Consensus 236 gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 287 (287)
||+|||++++++++++.+++|.++|++.|+.||. .++.|.+|++|+++|++
T Consensus 285 gK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 285 GKGTLVALRGEAWAREKLQEQVAEASELLAPYGE-KAAILIAAARFIAERKS 335 (335)
T ss_dssp -CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG-GGHHHHHHHHHHHC---
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999975 67899999999999974
No 9
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=1.2e-72 Score=511.19 Aligned_cols=280 Identities=40% Similarity=0.613 Sum_probs=237.1
Q ss_pred chHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCC
Q 038404 2 TSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCM 81 (287)
Q Consensus 2 ~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~ 81 (287)
++..+.|++.|.+.++...|+.+.++++|. ..||||+||.||+++++++|++++.+.++|++|||||+|||||||||+|
T Consensus 8 ~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDip~m 86 (297)
T 3m0g_A 8 KEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCM 86 (297)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HSCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 345678999999999875566799999999 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhc--CCC
Q 038404 82 DNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSE--GKD 159 (287)
Q Consensus 82 D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~--~~~ 159 (287)
|+|++|||+||+|++||+++|||+||+|++.||+.+++.... ++....+++..+++++|..+++.||.+|+.+. ...
T Consensus 87 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~-~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~ 165 (297)
T 3m0g_A 87 DNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLG-SAENRVALVAALAQASGAEGMVYGQALDIAAETAAVP 165 (297)
T ss_dssp TCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGC-CHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSSC
T ss_pred CCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCCC
Confidence 999999999999999999999999999999999999985322 45567788889999888788999999999988 445
Q ss_pred CCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCc
Q 038404 160 VSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239 (287)
Q Consensus 160 ~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T 239 (287)
+++++|..|+++|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++.+||++|+|+++||+|
T Consensus 166 ~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T 242 (297)
T 3m0g_A 166 LTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKAT 242 (297)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC---------------------CC
T ss_pred CCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCcc
Confidence 8999999999999999999999999999998876 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccC
Q 038404 240 YPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287 (287)
Q Consensus 240 ~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 287 (287)
||+++++++|++.++++.++|++.|+.||.. .+.|.++++|+++|++
T Consensus 243 ~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~-~~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 243 FVSLLGLAGAKSRAADLVAEAEAALAPYGEA-ASTLRACARYVIERDK 289 (297)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHTGGGGGG-GHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999763 4899999999999964
No 10
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=7e-72 Score=507.94 Aligned_cols=285 Identities=44% Similarity=0.651 Sum_probs=264.2
Q ss_pred hHHHHHHHHHhHHhccC--CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCC
Q 038404 3 SKAKRVNKALDETVQLR--HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPC 80 (287)
Q Consensus 3 ~~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~ 80 (287)
+..+.|++.|.+.++.. .|+.+.++++|.+..||||+||.+|+++++++|++++.+.++|++||+||+||||||||||
T Consensus 9 ~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~ 88 (299)
T 1rqj_A 9 ACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPA 88 (299)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChh
Confidence 45678999999999764 2567999999999999999999999999999999888899999999999999999999999
Q ss_pred CCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHccc-CCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCC
Q 038404 81 MDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKS-TEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD 159 (287)
Q Consensus 81 ~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~ 159 (287)
||+|++|||+||+|.+||+++|||+||+|++.||+++++.. .+.++....+++..+++++|..+++.||.+|+.+..+.
T Consensus 89 ~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~~ 168 (299)
T 1rqj_A 89 MDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKH 168 (299)
T ss_dssp TTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTTC
T ss_pred hcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCC
Confidence 99999999999999999999999999999999999999842 24556677788999998887778999999999987666
Q ss_pred CCHHHHHHHHhcchHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCC
Q 038404 160 VSLNELENIHLHKTAKLLEAAVVCGVII-GGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKA 238 (287)
Q Consensus 160 ~~~~~~~~i~~~KTg~l~~~~~~~ga~l-a~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~ 238 (287)
+++++|..|+++|||+||++||++|+++ +|++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++||+
T Consensus 169 ~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~ 248 (299)
T 1rqj_A 169 VPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKS 248 (299)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCC
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCC
Confidence 8999999999999999999999999999 998888899999999999999999999999999999999999999999999
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHhhccCc-c-cHHHHHHHHHHHHhccC
Q 038404 239 TYPKLMGIENARKFACDLLAQATEELAYFEV-A-RAAPLYHLAYYIASRQH 287 (287)
Q Consensus 239 T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~-~-~~~~L~~l~~~~~~R~~ 287 (287)
|||++++++++++.+++|.++|++.|+.+|. . .++.|.+|++|+++|++
T Consensus 249 T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 249 TYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 299 (299)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999953 3 57899999999999974
No 11
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=7.6e-73 Score=514.06 Aligned_cols=284 Identities=37% Similarity=0.568 Sum_probs=250.3
Q ss_pred chHHHHHHHHHhHHhccC-CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhH--hHHHHHHHHHHHHHHHHhCC
Q 038404 2 TSKAKRVNKALDETVQLR-HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSA--MPVACALEMIHTMSLVHDDL 78 (287)
Q Consensus 2 ~~~~~~i~~~l~~~~~~~-~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~--~~~A~avEliH~asLihDDI 78 (287)
++..+.|++.|.+.++.. .|+.+.++++|.+..||||+||.+|+++++++|++.+.+ .++|++|||||+||||||||
T Consensus 13 ~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~~A~aiEliH~aSLIHDDi 92 (309)
T 3pde_A 13 DQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTYSLIHDDL 92 (309)
T ss_dssp HHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHhHhHHHHHHHHHHHHHHHHCCc
Confidence 345678999999988764 467899999999999999999999999999999998888 99999999999999999999
Q ss_pred CCCCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 038404 79 PCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK 158 (287)
Q Consensus 79 ~~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~ 158 (287)
||||+|++|||+||+|++||+++|||+||+|++.||+.+++. +.++....+++..+++++|..+++.||.+|+.+...
T Consensus 93 P~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~--~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~ 170 (309)
T 3pde_A 93 PAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTAT--DLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHV 170 (309)
T ss_dssp TTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSS--SCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC
T ss_pred hhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCC
Confidence 999999999999999999999999999999999999999984 345666778888999888777899999999999876
Q ss_pred CCCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCC
Q 038404 159 DVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKA 238 (287)
Q Consensus 159 ~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~ 238 (287)
.+++++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++||+
T Consensus 171 ~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~ 250 (309)
T 3pde_A 171 NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKN 250 (309)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSS
T ss_pred CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCc
Confidence 78999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHhhccCcc-cHHHHHHHHHHHHhccC
Q 038404 239 TYPKLMGIENARKFACDLLAQATEELAYFEVA-RAAPLYHLAYYIASRQH 287 (287)
Q Consensus 239 T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~~~~R~~ 287 (287)
|||++++++.+++.++++.++|.+.|+.++.. ..+.|.+|++|+++|++
T Consensus 251 T~p~l~al~~a~~~~~~~~~~a~~~l~~~~~~~~~~~L~~l~~~~~~r~~ 300 (309)
T 3pde_A 251 TYPGKLGLIGANQALIDTIHSGQAALQGLPTSTQRDDLAAFFSYFDTERV 300 (309)
T ss_dssp SHHHHHCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHGGGGGSCTTTT
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999995321 11229999999999974
No 12
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=1.1e-71 Score=506.73 Aligned_cols=283 Identities=40% Similarity=0.603 Sum_probs=248.9
Q ss_pred HHHHHHHHHhHHhccC-CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCC
Q 038404 4 KAKRVNKALDETVQLR-HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMD 82 (287)
Q Consensus 4 ~~~~i~~~l~~~~~~~-~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D 82 (287)
..+.|++.|.+.++.. .|+.+.++++|.+..||||+||.||+++++++|++++.++++|++||+||+||||||||||||
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D 88 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMD 88 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCchhcc
Confidence 3577999999988652 345699999999999999999999999999999988888999999999999999999999999
Q ss_pred CCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCH
Q 038404 83 NDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSL 162 (287)
Q Consensus 83 ~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~ 162 (287)
+|++|||+||+|.+||+++|||+||+|++.||+++++.. +.+++...+++..+++++|..+++.||.+|+.+..+.+++
T Consensus 89 ~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~~~~~ 167 (301)
T 1rtr_A 89 NDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDD-RLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDL 167 (301)
T ss_dssp CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCH
T ss_pred CCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCCCCCH
Confidence 999999999999999999999999999999999999852 3455667788899999888788999999999987766899
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHH
Q 038404 163 NELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPK 242 (287)
Q Consensus 163 ~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~ 242 (287)
++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||++++|+++||+|||+
T Consensus 168 ~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~ 247 (301)
T 1rtr_A 168 ETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVS 247 (301)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhccCc-ccHHHHHHHHHHHHhccC
Q 038404 243 LMGIENARKFACDLLAQATEELAYFEV-ARAAPLYHLAYYIASRQH 287 (287)
Q Consensus 243 ~~~l~~a~~~~~~~~~~A~~~L~~l~~-~~~~~L~~l~~~~~~R~~ 287 (287)
+++++++++.++++.++|++.|+.||+ ..++.|.++++|+++|++
T Consensus 248 l~al~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 248 LLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCTTSCCHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999964 457899999999999974
No 13
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=3.1e-70 Score=498.01 Aligned_cols=275 Identities=32% Similarity=0.498 Sum_probs=240.7
Q ss_pred HHHHHhHHhcc--CCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCc------hhHhHHHHHHHHHHHHHHHHhCCC
Q 038404 8 VNKALDETVQL--RHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDE------SSAMPVACALEMIHTMSLVHDDLP 79 (287)
Q Consensus 8 i~~~l~~~~~~--~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~------~~~~~~A~avEliH~asLihDDI~ 79 (287)
|++.|.+.++. ..|+.+.++++|.+..||||+||.+|+++++++|++. +.+.++|++|||||+|||||||||
T Consensus 18 ve~~l~~~~~~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp 97 (311)
T 3llw_A 18 FESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLP 97 (311)
T ss_dssp HHHHHHTCCCCCCSSCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHhhCCCCchHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 89999998864 2456799999999999999999999999999999988 889999999999999999999999
Q ss_pred CCCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCC
Q 038404 80 CMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD 159 (287)
Q Consensus 80 ~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~ 159 (287)
|||+|++|||+||+|++||+..|||+||+|++.||+.+++. ..++....+++..++++.|..+++.||.+|+.+....
T Consensus 98 ~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~--~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~ 175 (311)
T 3llw_A 98 CMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNA--LLESHIIVELIKILSANGGIKGMILGQALDCYFENTP 175 (311)
T ss_dssp TTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHS--CSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSC
T ss_pred ccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999982 3455667788889998877689999999999988666
Q ss_pred CCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCC
Q 038404 160 VSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEV-ERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKA 238 (287)
Q Consensus 160 ~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~-~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~ 238 (287)
+++++|..|+++|||+||++||++|++++|++++.. +.+++||.++|+||||+||++|+++|++.+||+.++ ++||+
T Consensus 176 ~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~--~~gK~ 253 (311)
T 3llw_A 176 LNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL--DSAKN 253 (311)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCS
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc--ccCcc
Confidence 899999999999999999999999999999998888 899999999999999999999999999999999776 99999
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHhhccCc--cc-HHHHHHHHHHHHhcc
Q 038404 239 TYPKLMGIENARKFACDLLAQATEELAYFEV--AR-AAPLYHLAYYIASRQ 286 (287)
Q Consensus 239 T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~--~~-~~~L~~l~~~~~~R~ 286 (287)
|||++++++.+++.++++.++|.+.|+.|+. .. .+.|+++++|+++|.
T Consensus 254 T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 254 SFVNLLGLERANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFKGE 304 (311)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999432 23 678999999999996
No 14
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.1e-68 Score=483.68 Aligned_cols=277 Identities=37% Similarity=0.496 Sum_probs=239.3
Q ss_pred HHHHHHHHHhHHhccC--CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCC-chhHhHHHHHHHHHHHHHHHHhCCCC
Q 038404 4 KAKRVNKALDETVQLR--HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGD-ESSAMPVACALEMIHTMSLVHDDLPC 80 (287)
Q Consensus 4 ~~~~i~~~l~~~~~~~--~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~-~~~~~~~A~avEliH~asLihDDI~~ 80 (287)
..+.|++.|.+.++.. .++.+.++++|.+..||||+||.+|+++++++|++ .+.+.++|++|||||+||||||||||
T Consensus 5 ~~~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~ 84 (291)
T 3npk_A 5 LKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPA 84 (291)
T ss_dssp HHHHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHCCccc
Confidence 4578999999988642 34579999999999999999999999999999886 47889999999999999999999999
Q ss_pred CCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC
Q 038404 81 MDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDV 160 (287)
Q Consensus 81 ~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~ 160 (287)
||+|++|||+||+|++||++.|||+||+|++.||+.+++. +.++....+++..++++.|..+++.||.+|+.+....+
T Consensus 85 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~--~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~ 162 (291)
T 3npk_A 85 MDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHA--HLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL 162 (291)
T ss_dssp TTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTS--SSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCC
T ss_pred ccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999874 33556677888888888666899999999999887668
Q ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcH
Q 038404 161 SLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATY 240 (287)
Q Consensus 161 ~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~ 240 (287)
++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.+.| +||+||
T Consensus 163 ~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~ 240 (291)
T 3npk_A 163 SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSF 240 (291)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCH
T ss_pred CHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchH
Confidence 999999999999999999999999999999999899999999999999999999999999999999999876 999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHh
Q 038404 241 PKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIAS 284 (287)
Q Consensus 241 p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~ 284 (287)
|++++++.+++.++++.++|.+.|+.|+.+..+.|+++++|..+
T Consensus 241 p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~l~~la~~~~~ 284 (291)
T 3npk_A 241 VNLLGLEQAIKTKENLLNECEQDLEKLNEKLAQMIQNLIIQYLE 284 (291)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999976447899999998765
No 15
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=8.3e-69 Score=483.24 Aligned_cols=268 Identities=32% Similarity=0.502 Sum_probs=235.6
Q ss_pred HHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCCC
Q 038404 4 KAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDN 83 (287)
Q Consensus 4 ~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D~ 83 (287)
..++|++.|.+.++...|+.+.++++|.+..||||+||.+|+++++++|++++.+.++|++||+||+||||||||||||+
T Consensus 14 ~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~ 93 (284)
T 2ftz_A 14 KXEXVEERIREILRPGWDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDN 93 (284)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC
T ss_pred chHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC
Confidence 35889999999985444667999999999999999999999999999999888899999999999999999999999999
Q ss_pred CCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC--CCC
Q 038404 84 DDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK--DVS 161 (287)
Q Consensus 84 s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~--~~~ 161 (287)
|++|||+||+|.+||+++|||+||+|++.||+.+++.. +. +++..+++++ .+++.||.+|+.+..+ .++
T Consensus 94 s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~----~~---~~~~~l~~~~--~~~~~GQ~ldl~~~~~~~~~~ 164 (284)
T 2ftz_A 94 ADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIG----NS---XIFEEFSETA--YXLLLGEAMDVEFERRXMEVS 164 (284)
T ss_dssp CSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC----CH---HHHHHHHHHH--HHHHHHHHHHHHHHHSCCCCC
T ss_pred CCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCC----hH---HHHHHHHHHH--HHHhhhhHHHHHhccCcCCCC
Confidence 99999999999999999999999999999999999851 22 4455556665 7899999999998755 589
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHH
Q 038404 162 LNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYP 241 (287)
Q Consensus 162 ~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p 241 (287)
+++|..|+++|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++.+||++|+|++ |+|||
T Consensus 165 ~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p 239 (284)
T 2ftz_A 165 QEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLV 239 (284)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchH
Confidence 99999999999999999999999999998776 89999999999999999999999999999999999999 99999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhccCcccHHH-HHHHHHHHHhc
Q 038404 242 KLMGIENARKFACDLLAQATEELAYFEVARAAP-LYHLAYYIASR 285 (287)
Q Consensus 242 ~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~-L~~l~~~~~~R 285 (287)
++++++++++.+++|.++|++.|+.||...++. |.++++|+++|
T Consensus 240 ~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 240 XXVGIQXAREMADXYYEEVLXGIESEGLFRTLFLLXELXQMVEER 284 (284)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHcC
Confidence 999999999999999999999999997545678 99999999987
No 16
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=1.2e-67 Score=487.62 Aligned_cols=274 Identities=32% Similarity=0.494 Sum_probs=223.2
Q ss_pred CchHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCC
Q 038404 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPC 80 (287)
Q Consensus 1 ~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~ 80 (287)
++++++.|++.|.+.++...| .+.++++|.+..||||+||.+|+++++++|++.+.+.++|++|||||+||||||||
T Consensus 31 l~~~l~~v~~~l~~~l~~~~~-~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi-- 107 (345)
T 3oyr_A 31 AEADMAGVNRLITDRMQSDVA-IIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDV-- 107 (345)
T ss_dssp THHHHHHHHHHHHHHTCCSST-HHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTT--
T ss_pred HHHHHHHHHHHHHHHhccCCh-hHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcc--
Confidence 356789999999999988655 69999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCC-
Q 038404 81 MDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD- 159 (287)
Q Consensus 81 ~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~- 159 (287)
||+|++|||+||+|.+||++.|||+||||+++||+.+++... . +++..+++++ ..++.||.+|+.+..+.
T Consensus 108 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~----~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~ 178 (345)
T 3oyr_A 108 VDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNS----M---KALEILARAS--RVIAEGEVLQLMRSHDLN 178 (345)
T ss_dssp C---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTC----H---HHHHHHHHHH--HHHHHHHHHHHHTSSCSS
T ss_pred cCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCc----H---HHHHHHHHHH--HHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999998521 2 3445556666 57999999999987653
Q ss_pred CCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCc
Q 038404 160 VSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239 (287)
Q Consensus 160 ~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T 239 (287)
+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++||+|
T Consensus 179 ~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~T 258 (345)
T 3oyr_A 179 LSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKAT 258 (345)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CC
T ss_pred CCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhH--------------------------------------HHHHHHHHHHHHHHHHHhhccCc-ccHHHHHHHHH
Q 038404 240 YPKLMGI--------------------------------------ENARKFACDLLAQATEELAYFEV-ARAAPLYHLAY 280 (287)
Q Consensus 240 ~p~~~~l--------------------------------------~~a~~~~~~~~~~A~~~L~~l~~-~~~~~L~~l~~ 280 (287)
||+++++ +++++.+++|.++|++.|+.||+ +.++.|.+|++
T Consensus 259 lP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~la~ 338 (345)
T 3oyr_A 259 LPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWREALEELAD 338 (345)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9999864 67889999999999999999965 45689999999
Q ss_pred HHHhcc
Q 038404 281 YIASRQ 286 (287)
Q Consensus 281 ~~~~R~ 286 (287)
|+++|+
T Consensus 339 ~~~~R~ 344 (345)
T 3oyr_A 339 FAVSRR 344 (345)
T ss_dssp HHHHC-
T ss_pred HHHhcc
Confidence 999996
No 17
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=6.6e-67 Score=482.51 Aligned_cols=276 Identities=30% Similarity=0.466 Sum_probs=236.2
Q ss_pred CchHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCC
Q 038404 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPC 80 (287)
Q Consensus 1 ~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~ 80 (287)
++++++.|++.|.+.++...++.+.++++|.+..||||+||.+|+++++++|++.+.+.++|++||+||+||||||||
T Consensus 18 l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI-- 95 (341)
T 3mzv_A 18 LAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDV-- 95 (341)
T ss_dssp THHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCc--
Confidence 356789999999999987525569999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCC-
Q 038404 81 MDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD- 159 (287)
Q Consensus 81 ~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~- 159 (287)
||+|++|||+||+|.+||++.|||+||||+++||+.+++... .. ++..+++++ ..++.||.+|+.+..+.
T Consensus 96 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~----~~---~~~~~~~~~--~~~~~GQ~~dl~~~~~~~ 166 (341)
T 3mzv_A 96 VDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGN----MR---VMEILANAS--AVIAEGEVLQLTAAQNLA 166 (341)
T ss_dssp ------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCC----HH---HHHHHHHHH--HHHHHHHHHHHHHTTCTT
T ss_pred cCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCc----HH---HHHHHHHHH--HHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999998521 23 444555555 67999999999987653
Q ss_pred CCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCc
Q 038404 160 VSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239 (287)
Q Consensus 160 ~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T 239 (287)
+++++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++||+|
T Consensus 167 ~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T 246 (341)
T 3mzv_A 167 TTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLT 246 (341)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCC
T ss_pred CCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh--------------------------------------HHHHHHHHHHHHHHHHHHhhccCc-ccHHHHHHHHH
Q 038404 240 YPKLMG--------------------------------------IENARKFACDLLAQATEELAYFEV-ARAAPLYHLAY 280 (287)
Q Consensus 240 ~p~~~~--------------------------------------l~~a~~~~~~~~~~A~~~L~~l~~-~~~~~L~~l~~ 280 (287)
||++++ ++++++.+++|.++|++.|+.||+ +.++.|.+|++
T Consensus 247 lp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~la~ 326 (341)
T 3mzv_A 247 MPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQMLDDLAD 326 (341)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999984 467888999999999999999965 45799999999
Q ss_pred HHHhccC
Q 038404 281 YIASRQH 287 (287)
Q Consensus 281 ~~~~R~~ 287 (287)
|+++|.+
T Consensus 327 ~~~~r~~ 333 (341)
T 3mzv_A 327 YVVERVR 333 (341)
T ss_dssp HHTGGGC
T ss_pred HHHhccc
Confidence 9999964
No 18
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=4.8e-67 Score=474.67 Aligned_cols=271 Identities=70% Similarity=1.098 Sum_probs=246.3
Q ss_pred hHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCC
Q 038404 3 SKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMD 82 (287)
Q Consensus 3 ~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D 82 (287)
++++.|++.|.+.++...|+.+.++++|.+..||||+||.+|+++++++|++++.++++|++||+||+|||||||||+||
T Consensus 19 ~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDip~mD 98 (293)
T 2j1p_A 19 RKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMD 98 (293)
T ss_dssp HHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred HHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc
Confidence 45678999999999776677799999999999999999999999999999988888999999999999999999999999
Q ss_pred CCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCC-CCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC---
Q 038404 83 NDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTE-ISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK--- 158 (287)
Q Consensus 83 ~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~--- 158 (287)
+|++|||+||+|.+||++.|||+||+|++.||+.+++.... .++..+++++..+++++|..+++.||.+|+.+...
T Consensus 99 ~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~ 178 (293)
T 2j1p_A 99 NDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLN 178 (293)
T ss_dssp CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---CCHH
T ss_pred CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999985322 45667888888999887767899999999998764
Q ss_pred CCCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCC
Q 038404 159 DVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKA 238 (287)
Q Consensus 159 ~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~ 238 (287)
.+++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+++++ |.
T Consensus 179 ~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~--------------K~ 244 (293)
T 2j1p_A 179 NVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS--------------KL 244 (293)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CC
T ss_pred CCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--------------cc
Confidence 3678899999999999999999999999999999999999999999999999999999999865 89
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccC
Q 038404 239 TYPKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287 (287)
Q Consensus 239 T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 287 (287)
|+|+++++++|++.+++|.++|++.|+.+|+..++.|.++++|+++|.+
T Consensus 245 T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 245 TYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 293 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTSCTTTTHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999975567899999999999975
No 19
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.1e-67 Score=486.15 Aligned_cols=280 Identities=39% Similarity=0.554 Sum_probs=255.8
Q ss_pred chHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCC
Q 038404 2 TSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCM 81 (287)
Q Consensus 2 ~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~ 81 (287)
+++++.|++.|.+.++...++.+.++++|++..||||+||.+|+++++++|++++.+.++|++|||||+|||||||| |
T Consensus 12 ~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi--~ 89 (342)
T 1wy0_A 12 KEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVHDDI--M 89 (342)
T ss_dssp HHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCc--c
Confidence 34577899999999977426679999999999999999999999999999998888999999999999999999999 9
Q ss_pred CCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC-CC
Q 038404 82 DNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK-DV 160 (287)
Q Consensus 82 D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~ 160 (287)
|+|++|||+||+|.+||+++|||+||+|++.||+.+++.. .+++...+++..+++++ .+++.||.+|+.+... ..
T Consensus 90 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~--~~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~ 165 (342)
T 1wy0_A 90 DMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAE--IPPEKKARVLEVIVKAS--NELCEGQARDLEFEKKSTV 165 (342)
T ss_dssp HTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCC--SCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTTCSCC
T ss_pred cCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcc--cCcccHHHHHHHHHHHH--HHHHHHHHHHHHcccCCCC
Confidence 9999999999999999999999999999999999999852 34555667777788877 7899999999998865 38
Q ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcH
Q 038404 161 SLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATY 240 (287)
Q Consensus 161 ~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~ 240 (287)
++++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++||+||
T Consensus 166 ~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tl 245 (342)
T 1wy0_A 166 TIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTL 245 (342)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCH
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHH-------------------------------------------------HHHHHHHHHHHHHHHHhhccCcc-
Q 038404 241 PKLMGIE-------------------------------------------------NARKFACDLLAQATEELAYFEVA- 270 (287)
Q Consensus 241 p~~~~l~-------------------------------------------------~a~~~~~~~~~~A~~~L~~l~~~- 270 (287)
|++++++ ++++.++++.++|++.|+.+|+.
T Consensus 246 p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 325 (342)
T 1wy0_A 246 IVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKSK 325 (342)
T ss_dssp HHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCCH
T ss_pred HHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 9999875 56778889999999999999654
Q ss_pred cHHHHHHHHHHHHhccC
Q 038404 271 RAAPLYHLAYYIASRQH 287 (287)
Q Consensus 271 ~~~~L~~l~~~~~~R~~ 287 (287)
.++.|.++++++++|++
T Consensus 326 ~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 326 ARMDLELLAKFIVEREY 342 (342)
T ss_dssp HHHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHHHHhccC
Confidence 46899999999999974
No 20
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-66 Score=479.09 Aligned_cols=273 Identities=27% Similarity=0.391 Sum_probs=225.2
Q ss_pred chHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCC
Q 038404 2 TSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCM 81 (287)
Q Consensus 2 ~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~ 81 (287)
+++++.|++.|.+.++.. ++.+.++++|.+..||||+||.+|+++++++|++++.+.++|++|||+|+|||||||| |
T Consensus 14 ~~~l~~v~~~l~~~~~~~-~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI--~ 90 (334)
T 3rmg_A 14 EAELEDFKALFDTPLSDS-NALLDSVITHIRKRNGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVHDDV--V 90 (334)
T ss_dssp HHHHHHHHHHTC----CC-CHHHHHHHHHTCC----CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHhccC-cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHcCc--c
Confidence 457889999999999874 5679999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCC-C
Q 038404 82 DNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKD-V 160 (287)
Q Consensus 82 D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~-~ 160 (287)
|+|++|||+||+|.+||++.|||+||||++.||+.+++.. ...+++ .+++++ .+++.||.+|+.+.... +
T Consensus 91 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~~~~~~---~~~~~~--~~~~~GQ~ldl~~~~~~~~ 161 (334)
T 3rmg_A 91 DESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTN----NYEIIR---LVSSLG--QKLAEGELLQLSNVSNHSF 161 (334)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CHHHHH---HHHHHH--HHHHHHHHHHHHCCCC--C
T ss_pred CCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC----cHHHHH---HHHHHH--HHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999999998742 123444 445555 67999999999987653 8
Q ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcH
Q 038404 161 SLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATY 240 (287)
Q Consensus 161 ~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~ 240 (287)
++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++ +++.+|||+|+|+++||+||
T Consensus 162 t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK~T~ 240 (334)
T 3rmg_A 162 SEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTL 240 (334)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTCCCH
T ss_pred CHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999 57899999999999999999
Q ss_pred HHHH--------------------------------------hHHHHHHHHHHHHHHHHHHhhccCc-ccHHHHHHHHHH
Q 038404 241 PKLM--------------------------------------GIENARKFACDLLAQATEELAYFEV-ARAAPLYHLAYY 281 (287)
Q Consensus 241 p~~~--------------------------------------~l~~a~~~~~~~~~~A~~~L~~l~~-~~~~~L~~l~~~ 281 (287)
|+++ +++++++.+++|.++|++.|+.||+ +.++.|.+|++|
T Consensus 241 p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~ 320 (334)
T 3rmg_A 241 PALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLALRTYLDY 320 (334)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9998 4566788899999999999999965 356899999999
Q ss_pred HHhccC
Q 038404 282 IASRQH 287 (287)
Q Consensus 282 ~~~R~~ 287 (287)
+++|.+
T Consensus 321 ~~~R~~ 326 (334)
T 3rmg_A 321 VVAREK 326 (334)
T ss_dssp HHHCC-
T ss_pred HHhccc
Confidence 999974
No 21
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=1.3e-66 Score=482.56 Aligned_cols=273 Identities=25% Similarity=0.383 Sum_probs=232.1
Q ss_pred chHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhC-CCchhHhHHHHHHHHHHHHHHHHhCCCC
Q 038404 2 TSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVG-GDESSAMPVACALEMIHTMSLVHDDLPC 80 (287)
Q Consensus 2 ~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~-~~~~~~~~~A~avEliH~asLihDDI~~ 80 (287)
+++++.|++.|.+.++.. ++.+.++++|.+..||||+||.+|+++++++| ++.+.++++|++|||||+||||||||
T Consensus 41 ~~~l~~ve~~l~~~~~~~-~~~l~~~~~y~~~~gGKrlRp~L~ll~~~~~~~~~~~~~~~~A~avEliH~asLIHDDI-- 117 (360)
T 3lmd_A 41 NDAMVQVEELLHTELSSG-EDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLYHDDV-- 117 (360)
T ss_dssp HHHHHHHHHHHHHHHTCS-CHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhccC-cHHHHHHHHHHHHCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCC--
Confidence 456789999999999875 55799999999999999999999999999998 77888999999999999999999999
Q ss_pred CCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC
Q 038404 81 MDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDV 160 (287)
Q Consensus 81 ~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~ 160 (287)
||+|++|||+||+|.+||++.|||+||||++.||+.++++. + +++..+++++ .+++.||.+|+.+..+.+
T Consensus 118 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~----~----~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~ 187 (360)
T 3lmd_A 118 MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG----T----DTVAHFAETF--GELVTGQMRETVGPRDTD 187 (360)
T ss_dssp HC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC----H----HHHHHHHHHH--HHHHHHHHHHHHCCTTSC
T ss_pred cCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC----H----HHHHHHHHHH--HHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999852 2 3445556666 679999999999886558
Q ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcH
Q 038404 161 SLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATY 240 (287)
Q Consensus 161 ~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~ 240 (287)
++++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++||+||
T Consensus 188 t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tl 267 (360)
T 3lmd_A 188 PIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTL 267 (360)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCH
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-------------------------------------HHHHHHHHHHHHHHHHHHhhccCc-ccHHHHHHHHHHH
Q 038404 241 PKLMG-------------------------------------IENARKFACDLLAQATEELAYFEV-ARAAPLYHLAYYI 282 (287)
Q Consensus 241 p~~~~-------------------------------------l~~a~~~~~~~~~~A~~~L~~l~~-~~~~~L~~l~~~~ 282 (287)
|++++ ++++++.+++|.++|++.|+.||. +.++.|.+|++|+
T Consensus 268 p~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~La~~~ 347 (360)
T 3lmd_A 268 PVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATFT 347 (360)
T ss_dssp HHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99984 577899999999999999999965 3468999999999
Q ss_pred HhccC
Q 038404 283 ASRQH 287 (287)
Q Consensus 283 ~~R~~ 287 (287)
++|.+
T Consensus 348 ~~R~~ 352 (360)
T 3lmd_A 348 VKRVG 352 (360)
T ss_dssp HHTTS
T ss_pred HHhcc
Confidence 99964
No 22
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=2.7e-66 Score=481.34 Aligned_cols=273 Identities=30% Similarity=0.448 Sum_probs=241.3
Q ss_pred hHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCC
Q 038404 3 SKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMD 82 (287)
Q Consensus 3 ~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D 82 (287)
+..+.|++.|.+.++...|+.+.++++|.+..||||+||.+|+++++++|++.+.++++|++|||||+|||||||| ||
T Consensus 12 ~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI--~D 89 (358)
T 4dhd_A 12 KYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDI--ID 89 (358)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHH--HT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcc--cc
Confidence 3567899999999987546789999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhc------
Q 038404 83 NDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSE------ 156 (287)
Q Consensus 83 ~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~------ 156 (287)
+|++|||+||+|.+||++.|||+||+|++.||+.+.... ...+++..+++++ ..++.||.+|+.+.
T Consensus 90 ~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~d 161 (358)
T 4dhd_A 90 RGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTP------KPTLFAKEVAEVI--KAIDEGERLDILFEAAGRSD 161 (358)
T ss_dssp TCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSS------SHHHHHHHHHHHH--HHHHHHHHHHHHTBSSCCCC
T ss_pred CCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHH--HHHHHHHHHHHHcccccccc
Confidence 999999999999999999999999999999999996521 2234555666666 68999999999986
Q ss_pred -----CC--CCCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCcc
Q 038404 157 -----GK--DVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTA 229 (287)
Q Consensus 157 -----~~--~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~ 229 (287)
.. .+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||++
T Consensus 162 p~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~ 241 (358)
T 4dhd_A 162 PYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEI 241 (358)
T ss_dssp HHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CT
T ss_pred ccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCc
Confidence 32 47899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCC-cHHHHHhHHH--------------------------------------HHHHHHHHHHHHHHHhhccCcc
Q 038404 230 GKDLVSDKA-TYPKLMGIEN--------------------------------------ARKFACDLLAQATEELAYFEVA 270 (287)
Q Consensus 230 ~~Dl~~gk~-T~p~~~~l~~--------------------------------------a~~~~~~~~~~A~~~L~~l~~~ 270 (287)
|+|+++||+ |||++++++. +++.+++|.++|++.|+.+|+.
T Consensus 242 g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~ 321 (358)
T 4dhd_A 242 GKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNN 321 (358)
T ss_dssp THHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred hhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999 9999986654 6788999999999999999753
Q ss_pred cHHHHHHHHHHHHhccC
Q 038404 271 RAAPLYHLAYYIASRQH 287 (287)
Q Consensus 271 ~~~~L~~l~~~~~~R~~ 287 (287)
. .|.+|++|+++|++
T Consensus 322 ~--~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 322 G--TLKELLDFIVAREY 336 (358)
T ss_dssp H--HHHHHHHHHTTTTT
T ss_pred H--HHHHHHHHHHhccc
Confidence 3 99999999999974
No 23
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=4.2e-66 Score=476.18 Aligned_cols=275 Identities=28% Similarity=0.403 Sum_probs=248.4
Q ss_pred CchHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCC--CchhHhHHHHHHHHHHHHHHHHhCC
Q 038404 1 MTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGG--DESSAMPVACALEMIHTMSLVHDDL 78 (287)
Q Consensus 1 ~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~--~~~~~~~~A~avEliH~asLihDDI 78 (287)
++++++.|++.|.+.++...| .+.++++|.+..||||+||.+|+++++ +|+ +.+.+.++|++|||||+||||||||
T Consensus 21 i~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKrlRp~l~l~~~~-~g~~~~~~~~~~~A~aiEliH~asLiHDDi 98 (334)
T 3pko_A 21 VEPQLTALQDYLLRTVQLDNQ-PIHHKILALLKSGGKLLRPGYFYLFST-FGNAATPAQLQAGAAAIEILHVGTLIHDDV 98 (334)
T ss_dssp THHHHHHHHHHHHHHCCCSCH-HHHHHHHHHHHHCCCCHHHHHHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHhCCCCcHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 356789999999999987555 699999999999999999999999999 665 7788899999999999999999999
Q ss_pred CCCCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 038404 79 PCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK 158 (287)
Q Consensus 79 ~~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~ 158 (287)
||+|++|||+||+|.+||++.|||+||+|++.||+.+++... ++ . ++..+++++ .+++.||.+|+.+...
T Consensus 99 --~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~--~~-~---~~~~~~~~~--~~~~~Gq~~dl~~~~~ 168 (334)
T 3pko_A 99 --IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTT--DR-S---LIQNHIDAM--HRILQGELHQMDLNYR 168 (334)
T ss_dssp --HHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC--CH-H---HHHHHHHHH--HHHHHHHHHHHHTTTC
T ss_pred --CCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCC--CH-H---HHHHHHHHH--HHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999998532 22 3 344455555 6899999999988754
Q ss_pred -CCCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCC
Q 038404 159 -DVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDK 237 (287)
Q Consensus 159 -~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk 237 (287)
.+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||++|+|+++||
T Consensus 169 ~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK 248 (334)
T 3pko_A 169 EDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGV 248 (334)
T ss_dssp TTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCc
Confidence 3889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhHH-----------------------------------HHHHHHHHHHHHHHHHhhccCcc-cHHHHHHHHHH
Q 038404 238 ATYPKLMGIE-----------------------------------NARKFACDLLAQATEELAYFEVA-RAAPLYHLAYY 281 (287)
Q Consensus 238 ~T~p~~~~l~-----------------------------------~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~ 281 (287)
+|||++++++ ++++.++++.++|++.|+.+|.. .++.|.+|+++
T Consensus 249 ~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~ 328 (334)
T 3pko_A 249 YSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQLTRL 328 (334)
T ss_dssp CCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999998663 68899999999999999999653 57899999999
Q ss_pred HHhccC
Q 038404 282 IASRQH 287 (287)
Q Consensus 282 ~~~R~~ 287 (287)
+++|++
T Consensus 329 ~~~R~~ 334 (334)
T 3pko_A 329 LLRRDH 334 (334)
T ss_dssp HTTCC-
T ss_pred HHhccC
Confidence 999974
No 24
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=1.8e-65 Score=471.15 Aligned_cols=274 Identities=29% Similarity=0.405 Sum_probs=247.3
Q ss_pred chHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCC
Q 038404 2 TSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCM 81 (287)
Q Consensus 2 ~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~ 81 (287)
+++++.|++.|.+.++.. ++.+.++++|.+..||||+||.+|+++++++|++++.+.++|+++|++|+|||||||| |
T Consensus 11 ~~~~~~v~~~l~~~~~~~-~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi--~ 87 (325)
T 3aqb_B 11 NPYIIEVEKRLYECIQSD-SETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDY--I 87 (325)
T ss_dssp HHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHhccc-chHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhCcc--c
Confidence 346788999999999774 4569999999999999999999999999999988888999999999999999999999 9
Q ss_pred CCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC-CC
Q 038404 82 DNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK-DV 160 (287)
Q Consensus 82 D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~~ 160 (287)
|+|++|||+||+|.+||++.|||+||+|++.||+.+++.. ... ++..+++++ .+++.||.+|+.+..+ .+
T Consensus 88 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~~~---~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~ 158 (325)
T 3aqb_B 88 DNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATIN----NSK---FHQIFSKTI--LEVCFGEFDQMADRFNYPV 158 (325)
T ss_dssp HTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCC----CHH---HHHHHHHHH--HHHHHHHHHHHHTTTCCCC
T ss_pred cCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCC----hHH---HHHHHHHHH--HHHHHHHHHHHHcccCCCC
Confidence 9999999999999999999999999999999999999752 123 444555555 6899999999998765 38
Q ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcH
Q 038404 161 SLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATY 240 (287)
Q Consensus 161 ~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~ 240 (287)
++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+++||+||
T Consensus 159 ~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~ 238 (325)
T 3aqb_B 159 SFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITY 238 (325)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCH
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHH---------------------------------------HHHHHHHHHHHHHHhhccCcc-cHHHHHHHHH
Q 038404 241 PKLMGIENA---------------------------------------RKFACDLLAQATEELAYFEVA-RAAPLYHLAY 280 (287)
Q Consensus 241 p~~~~l~~a---------------------------------------~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~ 280 (287)
|++++++.+ ++.+++|.++|++.|+.+|.. .++.|..+++
T Consensus 239 p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~ 318 (325)
T 3aqb_B 239 PLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQLQDSNIKDYLEEIHE 318 (325)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999876543 455678899999999999654 4689999999
Q ss_pred HHHhccC
Q 038404 281 YIASRQH 287 (287)
Q Consensus 281 ~~~~R~~ 287 (287)
++++|++
T Consensus 319 ~~~~R~~ 325 (325)
T 3aqb_B 319 KMLKRVY 325 (325)
T ss_dssp HHTTTTC
T ss_pred HHHhCcC
Confidence 9999974
No 25
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=2.4e-65 Score=473.72 Aligned_cols=275 Identities=32% Similarity=0.446 Sum_probs=246.8
Q ss_pred hHHHHHHHHHhHHhccCCcHHHHHHHHHhh-----------hCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHH
Q 038404 3 SKAKRVNKALDETVQLRHPAKIHEAMRYSL-----------LAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTM 71 (287)
Q Consensus 3 ~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~-----------~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~a 71 (287)
.....|+..|++.+...+| .+.++..|.+ ..||||+||.+|+++++++|++++.++++|++|||||+|
T Consensus 11 ~~~~~v~~~l~~~v~~~~~-~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~avEliH~a 89 (352)
T 3nf2_A 11 RGRTLATPVLRAAVDRLAP-PMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNF 89 (352)
T ss_dssp HHHHHHHHHHHHHHHTSCT-THHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCh-HHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4568899999999998655 5999999988 679999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 038404 72 SLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIM 151 (287)
Q Consensus 72 sLihDDI~~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~ 151 (287)
||||||| ||+|++|||+||+|.+||++.|||+||||++.||+.++++.. + ...+++..+++++ ..++.||.+
T Consensus 90 sLiHDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~---~-~~~~~~~~~~~~~--~~l~~GQ~~ 161 (352)
T 3nf2_A 90 SLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGT---V-EAGRATRRLTKAS--RSLIDGQAQ 161 (352)
T ss_dssp HHHHHHH--HHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCS---H-HHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHcCC--CCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCC---c-hHHHHHHHHHHHH--HHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999998532 2 2345666667766 789999999
Q ss_pred hhhhcCC-CCCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccc
Q 038404 152 DIDSEGK-DVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAG 230 (287)
Q Consensus 152 d~~~~~~-~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~ 230 (287)
|+.+..+ .+++++|..|+.+|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+|||+|
T Consensus 162 dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g 241 (352)
T 3nf2_A 162 DISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTW 241 (352)
T ss_dssp HHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTT
T ss_pred HHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcC
Confidence 9998765 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHhHH--------------------------------------------HHHHHHHHHHHHHHHHhhc
Q 038404 231 KDLVSDKATYPKLMGIE--------------------------------------------NARKFACDLLAQATEELAY 266 (287)
Q Consensus 231 ~Dl~~gk~T~p~~~~l~--------------------------------------------~a~~~~~~~~~~A~~~L~~ 266 (287)
+||++||+|||++++++ ++++.+++|.++|++.|+.
T Consensus 242 ~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~~ 321 (352)
T 3nf2_A 242 SDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDA 321 (352)
T ss_dssp HHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998543 3445577889999999999
Q ss_pred cCc--ccHHHHHHHHHHHHhcc
Q 038404 267 FEV--ARAAPLYHLAYYIASRQ 286 (287)
Q Consensus 267 l~~--~~~~~L~~l~~~~~~R~ 286 (287)
+|+ ..++.|..|++|+++|.
T Consensus 322 lp~~~~~r~~L~~la~~~~~R~ 343 (352)
T 3nf2_A 322 VDMPDRVRDRFTALADFVVVRK 343 (352)
T ss_dssp SCCCHHHHHHHHHHHHHHCC--
T ss_pred CCCCcHHHHHHHHHHHHHHhcc
Confidence 964 45789999999999986
No 26
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=2.6e-65 Score=474.23 Aligned_cols=274 Identities=31% Similarity=0.415 Sum_probs=218.6
Q ss_pred chHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCC--CCchHHHHHHHHHHHhCCCc-----------------hhHhHHH
Q 038404 2 TSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAG--GKRVRPVLCIASCELVGGDE-----------------SSAMPVA 62 (287)
Q Consensus 2 ~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~g--GKr~Rp~l~l~~~~~~~~~~-----------------~~~~~~A 62 (287)
+++++.|++.|.+.+....| .+.++++|.+..| |||+||.+|+++++++|++. +.++++|
T Consensus 15 ~~~l~~v~~~l~~~~~~~~~-~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 93 (348)
T 3apz_A 15 ADELSLLSNKLREMVLAEVP-KLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIA 93 (348)
T ss_dssp HHHHHHHHHGGGGCCCCCCC-------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCh-hHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHHHHH
Confidence 45678899999998877555 5999999999877 99999999999999998642 2468899
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhh
Q 038404 63 CALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGS 142 (287)
Q Consensus 63 ~avEliH~asLihDDI~~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 142 (287)
++|||||+|||||||| ||+|++|||+||+|.+||++.|||+||+|++.||+.++++. ...+ +..+++++
T Consensus 94 ~avEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~~~~---~~~~~~~~-- 162 (348)
T 3apz_A 94 EITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALK----NTEV---VALLATAV-- 162 (348)
T ss_dssp HHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHHHHHHHHHTT----CHHH---HHHHHHHH--
T ss_pred HHHHHHHHHHHHhccc--cCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCC----CHHH---HHHHHHHH--
Confidence 9999999999999999 99999999999999999999999999999999999999852 1233 44455555
Q ss_pred hhhhhhhhhhhhhcCC-CCCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 038404 143 EGLVAGEIMDIDSEGK-DVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKS 221 (287)
Q Consensus 143 ~~~~~GQ~~d~~~~~~-~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~ 221 (287)
.+++.||.+|+.+... .+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++
T Consensus 163 ~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd 242 (348)
T 3apz_A 163 EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGT 242 (348)
T ss_dssp HHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 6899999999987643 378999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCccchhhhcCCCcHHHHH---------------------------------hHHHHHHHHHHHHHHHHHHhhccC
Q 038404 222 SKELGKTAGKDLVSDKATYPKLM---------------------------------GIENARKFACDLLAQATEELAYFE 268 (287)
Q Consensus 222 ~~~~GK~~~~Dl~~gk~T~p~~~---------------------------------~l~~a~~~~~~~~~~A~~~L~~l~ 268 (287)
++.+||+.|+|+++||+|||+++ +++++++.+++|.++|++.|+.+|
T Consensus 243 ~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~ 322 (348)
T 3apz_A 243 SASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLP 322 (348)
T ss_dssp TTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998 678899999999999999999996
Q ss_pred cc-------cHHHHHHHHHHHHhccC
Q 038404 269 VA-------RAAPLYHLAYYIASRQH 287 (287)
Q Consensus 269 ~~-------~~~~L~~l~~~~~~R~~ 287 (287)
.. .++.|.+|++++++|++
T Consensus 323 ~~~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 323 ETDNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCcccccHHHHHHHHHHHHHHHhCcC
Confidence 54 37899999999999975
No 27
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=5.2e-65 Score=460.76 Aligned_cols=264 Identities=27% Similarity=0.456 Sum_probs=230.2
Q ss_pred HHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCCCC
Q 038404 5 AKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDND 84 (287)
Q Consensus 5 ~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D~s 84 (287)
...|++.|.+.++...++.+.++++|.+..||||+||.+|+++++++|++++.+.++|++||+||+|||||||| ||+|
T Consensus 11 ~~~i~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi--~D~s 88 (295)
T 3ipi_A 11 YRYVEAGIKESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDL--LDQG 88 (295)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcC--cCCC
Confidence 47899999999987556779999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCHHH
Q 038404 85 DFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNE 164 (287)
Q Consensus 85 ~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~~~ 164 (287)
++|||+||+|.+||++.|||+||+|+++||+++++.. .. ++..+++++ ..++.||.+|+.+....+++++
T Consensus 89 ~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-----~~---~~~~~~~~~--~~~~~GQ~~dl~~~~~~~t~~~ 158 (295)
T 3ipi_A 89 LVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG-----EK---VIQDFGKAG--MDMAEGEVLDLKLEDESFGEND 158 (295)
T ss_dssp TSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-----HH---HHHHHHHHH--HHHHHHHHHHHC-------CHH
T ss_pred CCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHch-----HH---HHHHHHHHH--HHHHccchHHHHccCCCCCHHH
Confidence 9999999999999999999999999999999998742 23 444555555 6799999999998766688899
Q ss_pred HHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHH
Q 038404 165 LENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLM 244 (287)
Q Consensus 165 ~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~ 244 (287)
|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++ || |+.+||+|||+++
T Consensus 159 y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~gk~Tlp~l~ 232 (295)
T 3ipi_A 159 YFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKFTSETLPHIY 232 (295)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----CcccCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998763 55 6789999999999
Q ss_pred h--------HHHHHHHHHHHHHHHHHHhhccCc-ccHHHHHHHHHHHHhcc
Q 038404 245 G--------IENARKFACDLLAQATEELAYFEV-ARAAPLYHLAYYIASRQ 286 (287)
Q Consensus 245 ~--------l~~a~~~~~~~~~~A~~~L~~l~~-~~~~~L~~l~~~~~~R~ 286 (287)
+ +++|++.+++|.++|++.|+.||+ ..++.|.++++|++.|.
T Consensus 233 al~~~~~~~le~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~~~ 283 (295)
T 3ipi_A 233 MKSTSKEEALKKSIDCVKLHVAAAKETLETFRECPARDKLFQITDYITVDM 283 (295)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHTTGGG
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC
Confidence 8 999999999999999999999965 45689999999999874
No 28
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=5.1e-64 Score=462.34 Aligned_cols=273 Identities=24% Similarity=0.273 Sum_probs=241.2
Q ss_pred HHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCCC
Q 038404 4 KAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDN 83 (287)
Q Consensus 4 ~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D~ 83 (287)
..+.|++.|.+.+.. .++.+.++++|.+..||||+||.+++++++++|++++.++++|++|||+|+|||||||| ||+
T Consensus 8 ~~~~v~~~l~~~~~~-~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi--~D~ 84 (330)
T 1wmw_A 8 IRQALQERLLARLDH-PDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDI--EDG 84 (330)
T ss_dssp HHHHHHHHHHHHTCC-SSHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHT
T ss_pred HHHHHHHHHHHHhcc-ccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccc--ccC
Confidence 457889999998876 45579999999999999999999999999999998888999999999999999999999 999
Q ss_pred CCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHccc-CCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh-cCC--C
Q 038404 84 DDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKS-TEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDS-EGK--D 159 (287)
Q Consensus 84 s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~-~~~--~ 159 (287)
|++|||+||+|.+||++.|||+||+|++.||+.+++.. .+.++.+ ++..+++++ .+++.||.+|+.+ ..+ .
T Consensus 85 s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~ 159 (330)
T 1wmw_A 85 SEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPE---VLLEFHEVV--RRTAYGQHLDLLWTLGGTFD 159 (330)
T ss_dssp CCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHH---HHHHHHHHH--HHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHH---HHHHHHHHH--HHHHHHHHHHHHhcccCCCC
Confidence 99999999999999999999999999999999999853 1222233 444555555 7899999999998 654 4
Q ss_pred CCHHHHHHHHhcchHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCC
Q 038404 160 VSLNELENIHLHKTAKL-LEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKA 238 (287)
Q Consensus 160 ~~~~~~~~i~~~KTg~l-~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~ 238 (287)
+++++|..|+++|||+| |++||++|++++|++++.. +++||.++|+||||+||++|++++++ +||+.|+|+++||+
T Consensus 160 ~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~ 236 (330)
T 1wmw_A 160 LRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKR 236 (330)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCC
T ss_pred CCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCC
Confidence 89999999999999999 9999999999999887766 99999999999999999999999999 99999999999999
Q ss_pred cHHHHHhHH----------------------------------------HHHHHHHHHHHHHHHHhh----ccCcc-cHH
Q 038404 239 TYPKLMGIE----------------------------------------NARKFACDLLAQATEELA----YFEVA-RAA 273 (287)
Q Consensus 239 T~p~~~~l~----------------------------------------~a~~~~~~~~~~A~~~L~----~l~~~-~~~ 273 (287)
|||++++++ ++++.+++|.++|.+.|+ .+|.. .++
T Consensus 237 T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~~ 316 (330)
T 1wmw_A 237 TLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALD 316 (330)
T ss_dssp CHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHH
T ss_pred CHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHH
Confidence 999998653 345668888999999999 88643 468
Q ss_pred HHHHHHHHHHhccC
Q 038404 274 PLYHLAYYIASRQH 287 (287)
Q Consensus 274 ~L~~l~~~~~~R~~ 287 (287)
.|..+++++++|++
T Consensus 317 ~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 317 HLRGLLAALVERRA 330 (330)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhccC
Confidence 99999999999974
No 29
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=1.5e-62 Score=458.84 Aligned_cols=276 Identities=28% Similarity=0.416 Sum_probs=225.8
Q ss_pred HHHHHHHHhHHhccC-------Cc--HHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCC------chhHhHHHHHHHHHH
Q 038404 5 AKRVNKALDETVQLR-------HP--AKIHEAMRYSLLAGGKRVRPVLCIASCELVGGD------ESSAMPVACALEMIH 69 (287)
Q Consensus 5 ~~~i~~~l~~~~~~~-------~~--~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~------~~~~~~~A~avEliH 69 (287)
...|++.|.+.+... .| ..+.+++.|++..||||+||.||+++++++|++ .+.++++|++|||||
T Consensus 22 ~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~~~AaaiEliH 101 (380)
T 3lk5_A 22 PEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQ 101 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHH
Confidence 455666666666442 33 247788888888999999999999999999874 578899999999999
Q ss_pred HHHHHHhCCCCCCCCCCCcCccchhhh----------------cChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHH
Q 038404 70 TMSLVHDDLPCMDNDDFRRGKPTNHKV----------------FGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAI 133 (287)
Q Consensus 70 ~asLihDDI~~~D~s~~RRg~pt~h~~----------------~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~ 133 (287)
++||||||| ||+|++|||+||+|++ ||++.|||+||+|+++|++++++. +.+++...+++
T Consensus 102 ~asLIHDDI--mD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~--~~~~~~~~~~~ 177 (380)
T 3lk5_A 102 ACALIHDDI--IDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDS--GLSAEALARTR 177 (380)
T ss_dssp HHHHHHHHH--HTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTS--CCCHHHHHHHH
T ss_pred HHHHHHCCC--cCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHH
Confidence 999999999 9999999999999997 599999999999999999999984 33455555555
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCCC-CCHHHHHHHHhcchHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 038404 134 AELGSAVGSEGLVAGEIMDIDSEGKD-VSLNELENIHLHKTAKL-LEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQV 211 (287)
Q Consensus 134 ~~~~~~~g~~~~~~GQ~~d~~~~~~~-~~~~~~~~i~~~KTg~l-~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi 211 (287)
..++.+. .+++.||.+|+.+.... +++++|..|+++|||+| |++||++|++++|++++..+.++.||.++|+||||
T Consensus 178 ~~~~~~~--~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI 255 (380)
T 3lk5_A 178 DAWRGMR--TEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQL 255 (380)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 67999999999987543 78999999999999999 89999999999999999999999999999999999
Q ss_pred HHhhhccccchhhhCCccchhhhcCCCcHHHHHhH----------------------------------------HHHHH
Q 038404 212 VDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGI----------------------------------------ENARK 251 (287)
Q Consensus 212 ~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l----------------------------------------~~a~~ 251 (287)
+||++|+++|++.+|||+|+||++||+|||+++++ +++++
T Consensus 256 ~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~ 335 (380)
T 3lk5_A 256 RDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQ 335 (380)
T ss_dssp HHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHH
Confidence 99999999999999999999999999999999854 44556
Q ss_pred HHHHHHHHHHHHhhccCc--ccHHHHHHHHHHHHhcc
Q 038404 252 FACDLLAQATEELAYFEV--ARAAPLYHLAYYIASRQ 286 (287)
Q Consensus 252 ~~~~~~~~A~~~L~~l~~--~~~~~L~~l~~~~~~R~ 286 (287)
.+++|.++|++.|+.+|. ..++.|.+|++++..|+
T Consensus 336 ~~~~~~~~A~~~L~~lp~~~~~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 336 RISQLTESGLAHLDDVDIPDEVRAQLRALAIRSTERR 372 (380)
T ss_dssp HHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhh
Confidence 688899999999999963 45799999999999886
No 30
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=1.1e-62 Score=449.56 Aligned_cols=264 Identities=26% Similarity=0.306 Sum_probs=213.0
Q ss_pred hHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCc--hhHhHHHHHHHHHHHHHHHHhCCCC
Q 038404 3 SKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDE--SSAMPVACALEMIHTMSLVHDDLPC 80 (287)
Q Consensus 3 ~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~--~~~~~~A~avEliH~asLihDDI~~ 80 (287)
+.++.|++.|.+.++...++.+.+ .|.+..||||+||.+|+++++..+... +.+.++|++|||||+||||||||
T Consensus 4 ~~~~~i~~~l~~~~~~~~~~~~~~--~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDi-- 79 (315)
T 3tc1_A 4 KQLKAIQNKIASWIKEIESGFIDE--LFSKIGPSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTASLLHDDV-- 79 (315)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHH--HHTTCCCCCCHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHhhcCcHHHHH--HHHhcCCcccHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHcCC--
Confidence 346899999999997544444544 577889999999999999888332222 55679999999999999999999
Q ss_pred CCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC-C
Q 038404 81 MDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK-D 159 (287)
Q Consensus 81 ~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~-~ 159 (287)
||+|++|||+||+|.+||++.|||+||+|++.||+.++++. .. ++..+++++ .+++.||.+|+.+..+ .
T Consensus 80 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-----~~---~~~~~~~~~--~~~~~GQ~~dl~~~~~~~ 149 (315)
T 3tc1_A 80 IDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-----EL---IAQALSNAV--LRLSRGEIEDVFVGECFN 149 (315)
T ss_dssp C----------------CCSHHHHHHHHHHHHHHHHHTTSC-----HH---HHHHHHHHH--HHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-----HH---HHHHHHHHH--HHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999752 23 444555555 7899999999998765 3
Q ss_pred CCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCc
Q 038404 160 VSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239 (287)
Q Consensus 160 ~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T 239 (287)
+++++|..|+++|||+||++||++|++++|++ .+.++.||.++|+||||+||++|++++++.+||++|+|+++||+|
T Consensus 150 ~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T 226 (315)
T 3tc1_A 150 SDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTT 226 (315)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCC
T ss_pred CCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChh
Confidence 89999999999999999999999999999988 678999999999999999999999999999999999999999999
Q ss_pred HHHHH------------------------------------hHHHHHHHHHHHHHHHHHHhhccCcc-cHHHHHHHHHHH
Q 038404 240 YPKLM------------------------------------GIENARKFACDLLAQATEELAYFEVA-RAAPLYHLAYYI 282 (287)
Q Consensus 240 ~p~~~------------------------------------~l~~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~~ 282 (287)
||+++ +++++++.+++|.++|++.|+.||++ .++.|.++++|+
T Consensus 227 ~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~~r~~L~~l~~~~ 306 (315)
T 3tc1_A 227 LPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQDVISRT 306 (315)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99997 45677888999999999999999654 568899998876
Q ss_pred H
Q 038404 283 A 283 (287)
Q Consensus 283 ~ 283 (287)
.
T Consensus 307 ~ 307 (315)
T 3tc1_A 307 F 307 (315)
T ss_dssp -
T ss_pred H
Confidence 3
No 31
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=1.3e-62 Score=446.49 Aligned_cols=231 Identities=26% Similarity=0.380 Sum_probs=208.8
Q ss_pred chHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCC-CchhHhHHHHHHHHHHHHHHHHhCCCC
Q 038404 2 TSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGG-DESSAMPVACALEMIHTMSLVHDDLPC 80 (287)
Q Consensus 2 ~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~-~~~~~~~~A~avEliH~asLihDDI~~ 80 (287)
+++++.|++.|.+.++...| ++++|.+..||||+||.+++++++++|+ +++.+.++|++||++|+||||||||
T Consensus 10 ~~~l~~v~~~l~~~~~~~~~----~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~A~avEliH~asLiHDDi-- 83 (299)
T 1v4e_A 10 SYELEKVKERIEQILSQFFP----EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDV-- 83 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHSC----HHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhccCCH----HHHHHHHhCCCCcHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHhhCCC--
Confidence 34678899999998876444 9999999999999999999999999998 7788899999999999999999999
Q ss_pred CCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC
Q 038404 81 MDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDV 160 (287)
Q Consensus 81 ~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~ 160 (287)
||+|++|||+||+|.+||++.|||+||+|++.||+.+++.. ..+ ++..+++++ .+++.||.+|+.+..+.+
T Consensus 84 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~~~---~~~~~~~~~--~~~~~GQ~~dl~~~~~~~ 154 (299)
T 1v4e_A 84 IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIG----NNK---LRRAFLNVI--GKMSEAELIEQLSRYKPI 154 (299)
T ss_dssp HHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHC----CHH---HHHHHHHHH--HHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCC----hHH---HHHHHHHHH--HHHhhhHHHHHHccCCCC
Confidence 99999999999999999999999999999999999999852 123 444555555 689999999999876558
Q ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcH
Q 038404 161 SLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATY 240 (287)
Q Consensus 161 ~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~ 240 (287)
++++|..|+.+|||+||++||++|++++|+++ +.+++||.++|+||||+||++|++++ +.+||+.|+|+++||+||
T Consensus 155 ~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~ 230 (299)
T 1v4e_A 155 TKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASF 230 (299)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCH
T ss_pred CHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchH
Confidence 99999999999999999999999999999876 78999999999999999999999999 999999999999999999
Q ss_pred HHHHhHHHHHH
Q 038404 241 PKLMGIENARK 251 (287)
Q Consensus 241 p~~~~l~~a~~ 251 (287)
|++++++.+.+
T Consensus 231 p~l~al~~~~~ 241 (299)
T 1v4e_A 231 PLVTAMEKFPE 241 (299)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHhChH
Confidence 99997765544
No 32
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=3.1e-62 Score=451.82 Aligned_cols=236 Identities=19% Similarity=0.269 Sum_probs=200.7
Q ss_pred HHHHHHhHHhcc--CCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCCCC
Q 038404 7 RVNKALDETVQL--RHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDND 84 (287)
Q Consensus 7 ~i~~~l~~~~~~--~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D~s 84 (287)
.|++.|.+..+. ..++.+.++++|++..||||+||.+|+++++++|++.+.+.++|++||++|+|||||||| ||+|
T Consensus 9 ~v~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDI--~D~s 86 (340)
T 2e8v_A 9 KIDELINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDI--EDNA 86 (340)
T ss_dssp HHHHHHTSCCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HTTC
T ss_pred HHHHHHHhcccccccChHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCcc--ccCC
Confidence 577777766532 134569999999999999999999999999999998888999999999999999999999 9999
Q ss_pred CCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC----CC
Q 038404 85 DFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK----DV 160 (287)
Q Consensus 85 ~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~----~~ 160 (287)
++|||+||+|.+||++.|||+||+|++.||+.+++... +.....+++..++.++ ..++.||.+|+.+... .+
T Consensus 87 ~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~ 162 (340)
T 2e8v_A 87 PLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTT--KEPLYHNLITIFNEEL--INLHRGQGLDIYWRDFLPEIIP 162 (340)
T ss_dssp SEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCC--CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSTTSCCC
T ss_pred CCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCC--chhhHHHHHHHHHHHH--HHHHHHHHHHHHhhcccccCCC
Confidence 99999999999999999999999999999999998632 3344555666677766 7899999999987642 36
Q ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcH
Q 038404 161 SLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATY 240 (287)
Q Consensus 161 ~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~ 240 (287)
++++|..|+++|||+||++||++|++++|+++ ..+.+++||.++|+||||+||++|++++++.+||++|+|+++||+||
T Consensus 163 t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tl 241 (340)
T 2e8v_A 163 TQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSF 241 (340)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCH
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchH
Confidence 89999999999999999999999999999887 57899999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHH
Q 038404 241 PKLMGIENA 249 (287)
Q Consensus 241 p~~~~l~~a 249 (287)
|++++++.+
T Consensus 242 p~i~al~~~ 250 (340)
T 2e8v_A 242 PIVHALNFT 250 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999877654
No 33
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=3.1e-62 Score=444.74 Aligned_cols=258 Identities=24% Similarity=0.289 Sum_probs=218.5
Q ss_pred HhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc
Q 038404 12 LDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKP 91 (287)
Q Consensus 12 l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D~s~~RRg~p 91 (287)
+++.+.. .++.+.++++|.+..||||+||.+|+++++++|++++.+.++|++||++|+|||||||| ||+|++|||+|
T Consensus 2 ~~k~~~~-~~~~l~~~~~y~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi--~D~s~~RRG~p 78 (301)
T 2q80_A 2 MEKTQET-VQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDI--EDNSKLRRGFP 78 (301)
T ss_dssp -----CC-HHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEE
T ss_pred cccccCC-CcHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCCCCc
Confidence 3455554 34469999999999999999999999999999998888999999999999999999999 99999999999
Q ss_pred chhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC--CCCHHHHHHHH
Q 038404 92 TNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK--DVSLNELENIH 169 (287)
Q Consensus 92 t~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~--~~~~~~~~~i~ 169 (287)
|+|.+||++.|||+||+|++.|++.+++... + ..+++ ++..+ ..++.||.+|+.+... .+++++|..|+
T Consensus 79 t~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~---~-~~~~~---~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i 149 (301)
T 2q80_A 79 VAHSIYGIPSVINSANYVYFLGLEKVLTLDH---P-DAVKL---FTRQL--LELHQGQGLDIYWRDNYTCPTEEEYKAMV 149 (301)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHHHHHTTCC---T-THHHH---HHHHH--HHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHHHHHHHHHCCC---H-HHHHH---HHHHH--HHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 9999999999999999999999999998532 1 23333 34444 6799999999988543 37899999999
Q ss_pred hcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHH--
Q 038404 170 LHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE-- 247 (287)
Q Consensus 170 ~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~-- 247 (287)
++|||+||++||++|+++++.++ .+++||.++|+||||+||++|++++++.+||++|+|+++||+|||++++++
T Consensus 150 ~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~ 225 (301)
T 2q80_A 150 LQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSR 225 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHS
T ss_pred HcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcC
Confidence 99999999999999999999773 589999999999999999999999999999999999999999999998543
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccC
Q 038404 248 ----------------------------------NARKFACDLLAQATEELAYFEVARAAPLYHLAYYIASRQH 287 (287)
Q Consensus 248 ----------------------------------~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 287 (287)
++++.+++|.++|++.|+.+|.++ .|+.+++++..|.|
T Consensus 226 ~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~--~L~~l~~~l~~~~~ 297 (301)
T 2q80_A 226 PESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP--ELVALVKHLSKMFK 297 (301)
T ss_dssp TTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCC
T ss_pred ccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhc
Confidence 567788899999999999997533 49999999988864
No 34
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=2.1e-61 Score=436.20 Aligned_cols=257 Identities=18% Similarity=0.258 Sum_probs=231.1
Q ss_pred hHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCC
Q 038404 3 SKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMD 82 (287)
Q Consensus 3 ~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D 82 (287)
+..+.|++.|.+.++...++.+.++++|.+. ||||+||.+|+++++++|++++.+.++|+++|++|+|||||||| ||
T Consensus 17 ~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi--~D 93 (289)
T 2azj_A 17 EAKATIDRLIEQFLNSNRDWDLVDISSYILK-DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALCDI--VD 93 (289)
T ss_dssp HHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-CCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHH--HT
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCC--CC
Confidence 3457799999998875334569999999998 99999999999999999998888999999999999999999999 99
Q ss_pred CCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHH-HcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCC
Q 038404 83 NDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHV-AAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVS 161 (287)
Q Consensus 83 ~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~ 161 (287)
+|++|||+||+|.+||++.|||+||+|++.||+.+ ++.. + . ++..+++++ .+++.||.+|+.+
T Consensus 94 ~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~----~-~---~~~~~~~~~--~~~~~GQ~~dl~~------ 157 (289)
T 2azj_A 94 LDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG----D-D---ALNTSIELW--KDTSVGALRDMYD------ 157 (289)
T ss_dssp TCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----H-H---HHHHHHHHH--HHHHHHHHHTTTT------
T ss_pred CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc----H-H---HHHHHHHHH--HHHHHHHHHHHhh------
Confidence 99999999999999999999999999999999999 8741 2 3 445556655 7899999999975
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHH
Q 038404 162 LNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYP 241 (287)
Q Consensus 162 ~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p 241 (287)
+++|..|+++|||+||++||++|++++ ++++..+.+++||.++|+||||+||++|++++ ||+ |+++||.|||
T Consensus 158 ~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~gk~Tlp 229 (289)
T 2azj_A 158 NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGSAKQLF 229 (289)
T ss_dssp TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTTGGGGH
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcCcccHH
Confidence 567888999999999999999999999 89888999999999999999999999999986 454 8999999999
Q ss_pred HHH---hHHHH-HHHHHHHHHHHHHHhhccCc--ccHHHHHHHHHHHHhcc
Q 038404 242 KLM---GIENA-RKFACDLLAQATEELAYFEV--ARAAPLYHLAYYIASRQ 286 (287)
Q Consensus 242 ~~~---~l~~a-~~~~~~~~~~A~~~L~~l~~--~~~~~L~~l~~~~~~R~ 286 (287)
+++ +.+.+ +..+++|.++|++.|+.+|. +.++.|.++++|+++|.
T Consensus 230 ~l~~~~g~~~a~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 230 KYYREGKLEEYVRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGL 280 (289)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcc
Confidence 999 88888 78899999999999999964 35789999999999985
No 35
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=3.3e-61 Score=449.76 Aligned_cols=275 Identities=19% Similarity=0.241 Sum_probs=229.7
Q ss_pred HHHHHHHHhHHhcc----CCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCc----h---hHhHHHHHHHHHHHHHH
Q 038404 5 AKRVNKALDETVQL----RHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDE----S---SAMPVACALEMIHTMSL 73 (287)
Q Consensus 5 ~~~i~~~l~~~~~~----~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~----~---~~~~~A~avEliH~asL 73 (287)
...|++.+...++. ..++.+.++++|.+ .||||+||.+|+++++++|++. + .+.++|++|||||+|||
T Consensus 43 ~~~v~~~l~~~~~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~a~~~A~avEliH~asL 121 (374)
T 2qis_A 43 SQIVRVLTEDEMGHPEIGDAIARLKEVLEYNA-IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFL 121 (374)
T ss_dssp HHHHHHHHTTC--CGGGHHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHhhc-CCCcchHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666665543 13457889999877 7999999999999999998742 2 46789999999999999
Q ss_pred HHhCCCCCCCCCCCcCccchhhhcChh-HHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 038404 74 VHDDLPCMDNDDFRRGKPTNHKVFGED-TAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMD 152 (287)
Q Consensus 74 ihDDI~~~D~s~~RRg~pt~h~~~G~~-~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d 152 (287)
||||| ||+|++|||+||+|++||++ +||++||++++.+|+++++.....+ ...+++..++.++ ..++.||.+|
T Consensus 122 IHDDI--mD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~--~~~~~GQ~lD 195 (374)
T 2qis_A 122 VADDI--MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQP--YYLNLIELFLQSS--YQTEIGQTLD 195 (374)
T ss_dssp HHHHH--HTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTST--THHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHccc--cCCCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHH--HHHHHHHHHH
Confidence 99999 99999999999999999999 9999999999999999987532211 2233444445544 6789999999
Q ss_pred hhhcCC------CCCHHHHHHHHhcchHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh
Q 038404 153 IDSEGK------DVSLNELENIHLHKTAKL-LEAAVVCGVIIGG-GNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKE 224 (287)
Q Consensus 153 ~~~~~~------~~~~~~~~~i~~~KTg~l-~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~ 224 (287)
+.+... .+++++|..|+.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.
T Consensus 196 l~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~ 275 (374)
T 2qis_A 196 LLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSV 275 (374)
T ss_dssp HHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhh
Confidence 998753 278999999999999999 9999999999999 99999999999999999999999999999999999
Q ss_pred hCCccchhhhcCCCcHHHHHhHHH------------------------------------HHHHHHHHHHHHHHHhhccC
Q 038404 225 LGKTAGKDLVSDKATYPKLMGIEN------------------------------------ARKFACDLLAQATEELAYFE 268 (287)
Q Consensus 225 ~GK~~~~Dl~~gk~T~p~~~~l~~------------------------------------a~~~~~~~~~~A~~~L~~l~ 268 (287)
+|| +|+|+++||+|||++++++. +++.++++.++|++.|+.+|
T Consensus 276 ~GK-~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp 354 (374)
T 2qis_A 276 TGK-IGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYA 354 (374)
T ss_dssp HCS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCC-chhHHHcCCccHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999 89999999999999986643 23446778899999999996
Q ss_pred cc-cHHHHHHHHHHHHhccC
Q 038404 269 VA-RAAPLYHLAYYIASRQH 287 (287)
Q Consensus 269 ~~-~~~~L~~l~~~~~~R~~ 287 (287)
.. .++.|..+++++++|++
T Consensus 355 ~~~~k~~L~~l~~~i~~R~k 374 (374)
T 2qis_A 355 APLPPAVFLGLARKIYKRRK 374 (374)
T ss_dssp TTSCHHHHHHHHHHHC----
T ss_pred CchHHHHHHHHHHHHHcCcC
Confidence 53 57999999999999974
No 36
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=2.3e-60 Score=443.03 Aligned_cols=274 Identities=21% Similarity=0.243 Sum_probs=231.9
Q ss_pred HHHHHHHhHHhccC----CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCC----ch---hHhHHHHHHHHHHHHHHH
Q 038404 6 KRVNKALDETVQLR----HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGD----ES---SAMPVACALEMIHTMSLV 74 (287)
Q Consensus 6 ~~i~~~l~~~~~~~----~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~----~~---~~~~~A~avEliH~asLi 74 (287)
..+++.+...++.. .+.++.++++|.+ .||||+||.+|+++++++|++ ++ .+.++|++|||||+||||
T Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~asLi 115 (367)
T 1uby_A 37 QIVRDLTEDGIGHPEVGDAVARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLV 115 (367)
T ss_dssp HHHHHHHTTTSSCTTTHHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccCchhhHHHHHHHHhhhc-CCCcchhHHHHHHHHHHhCCCccCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444321 2357899999987 799999999999999999873 22 478999999999999999
Q ss_pred HhCCCCCCCCCCCcCccchhhhcChh-HHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 038404 75 HDDLPCMDNDDFRRGKPTNHKVFGED-TAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDI 153 (287)
Q Consensus 75 hDDI~~~D~s~~RRg~pt~h~~~G~~-~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~ 153 (287)
|||| ||+|++|||+||+|++||++ ++|+.||++++.+|+++++...+.+ ...+++..++.++ ..++.||.+|+
T Consensus 116 HDDI--mD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~--~~~~~GQ~lDl 189 (367)
T 1uby_A 116 ADDI--MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRP--YYVHLLELFLQTA--YQTELGQMLDL 189 (367)
T ss_dssp HHHH--HHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTST--THHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hCcc--cCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 9999 99999999999999999999 9999999999999999998532211 2233444444444 67899999999
Q ss_pred hhcCC------CCCHHHHHHHHhcchHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhh
Q 038404 154 DSEGK------DVSLNELENIHLHKTAKL-LEAAVVCGVIIGG-GNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKEL 225 (287)
Q Consensus 154 ~~~~~------~~~~~~~~~i~~~KTg~l-~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~ 225 (287)
.+... .+++++|..|+.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+
T Consensus 190 ~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~ 269 (367)
T 1uby_A 190 ITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALT 269 (367)
T ss_dssp HHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred hcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhc
Confidence 88642 378999999999999999 9999999999999 899999999999999999999999999999999999
Q ss_pred CCccchhhhcCCCcHHHHHhHHHH------------------------------------HHHHHHHHHHHHHHhhccCc
Q 038404 226 GKTAGKDLVSDKATYPKLMGIENA------------------------------------RKFACDLLAQATEELAYFEV 269 (287)
Q Consensus 226 GK~~~~Dl~~gk~T~p~~~~l~~a------------------------------------~~~~~~~~~~A~~~L~~l~~ 269 (287)
|| .|+|+++||+|||++++++.+ ++.++++.++|++.|+.+|+
T Consensus 270 GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~ 348 (367)
T 1uby_A 270 GA-VGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSN 348 (367)
T ss_dssp SC-CCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CC-chhhHHcCCchHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99 899999999999999976542 23567889999999999965
Q ss_pred -ccHHHHHHHHHHHHhccC
Q 038404 270 -ARAAPLYHLAYYIASRQH 287 (287)
Q Consensus 270 -~~~~~L~~l~~~~~~R~~ 287 (287)
..++.|..+++++.+|++
T Consensus 349 ~~~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 349 RLPKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp SSCTHHHHHHHHHHCCCCC
T ss_pred cHHHHHHHHHHHHHHhCcC
Confidence 357999999999999975
No 37
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=2.5e-60 Score=443.02 Aligned_cols=259 Identities=20% Similarity=0.250 Sum_probs=224.4
Q ss_pred cHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCC----chh---HhH----HHHHHHHHHHHHHHHhCCCCCCCCCCCcC
Q 038404 21 PAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGD----ESS---AMP----VACALEMIHTMSLVHDDLPCMDNDDFRRG 89 (287)
Q Consensus 21 ~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~----~~~---~~~----~A~avEliH~asLihDDI~~~D~s~~RRg 89 (287)
+..+.++++|.+ .||||+||.+|+++++++|++ ++. +++ +|++|||||+|||||||| ||+|++|||
T Consensus 33 ~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~a~~~a~avEliH~asLiHDDI--~D~s~~RRG 109 (362)
T 1yhl_A 33 ARYLRIMMDTTC-LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDI--MDGSVMRRG 109 (362)
T ss_dssp HHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCEETT
T ss_pred HHHHHHHHHhhc-CCcccHHHHHHHHHHHHhCCCcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCCCCC
Confidence 346888899987 799999999999999998875 222 344 788999999999999999 999999999
Q ss_pred ccchhhhcCh--hHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhc-----------
Q 038404 90 KPTNHKVFGE--DTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSE----------- 156 (287)
Q Consensus 90 ~pt~h~~~G~--~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~----------- 156 (287)
+||+|.+||+ ++|||+||+|++.+|+++++...+ +....+++..++.++ ..++.||.+|+.+.
T Consensus 110 ~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~~ 185 (362)
T 1yhl_A 110 KPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFAD--RPFLKDLLCLFQKVD--YATAVGQMYDVTSMCDSNKLDPEVA 185 (362)
T ss_dssp EECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHH--HHHHHHHHHHHTTTBCGGGCCTTSC
T ss_pred CccHHhccCccHhHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHH--HHHHHHHHHHHHccccccccccccc
Confidence 9999999999 589999999999999999985322 112334555555555 68999999999887
Q ss_pred C--C----CCCHHHHHHHHhcchHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCc
Q 038404 157 G--K----DVSLNELENIHLHKTAKL-LEAAVVCGVIIGG-GNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKT 228 (287)
Q Consensus 157 ~--~----~~~~~~~~~i~~~KTg~l-~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~ 228 (287)
. . .+++++|..|+.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 186 ~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK- 264 (362)
T 1yhl_A 186 QPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK- 264 (362)
T ss_dssp CCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-
T ss_pred cccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC-
Confidence 2 2 378999999999999999 9999999999999 88888899999999999999999999999999999999
Q ss_pred cchhhhcCCCcHHHHHhH------------------------------------HHHHHHHHHHHHHHHHHhhccCcc-c
Q 038404 229 AGKDLVSDKATYPKLMGI------------------------------------ENARKFACDLLAQATEELAYFEVA-R 271 (287)
Q Consensus 229 ~~~Dl~~gk~T~p~~~~l------------------------------------~~a~~~~~~~~~~A~~~L~~l~~~-~ 271 (287)
.|+||++||+|||+++++ +++++.++++.++|.+.|+.+|.. .
T Consensus 265 ~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~ 344 (362)
T 1yhl_A 265 VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSP 344 (362)
T ss_dssp CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 899999999999999843 345677888999999999999654 4
Q ss_pred H--HHHHHHHHHHHhccC
Q 038404 272 A--APLYHLAYYIASRQH 287 (287)
Q Consensus 272 ~--~~L~~l~~~~~~R~~ 287 (287)
+ +.|..|++++++|++
T Consensus 345 ~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 345 TFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp HHHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHHhccC
Confidence 6 889999999999975
No 38
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=8.5e-60 Score=442.03 Aligned_cols=257 Identities=23% Similarity=0.283 Sum_probs=210.6
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCC------chhHhHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhh
Q 038404 22 AKIHEAMRYSLLAGGKRVRPVLCIASCELVGGD------ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHK 95 (287)
Q Consensus 22 ~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~------~~~~~~~A~avEliH~asLihDDI~~~D~s~~RRg~pt~h~ 95 (287)
.++.++++|.+ .||||+||++|+++++++|++ .+.+.++|++|||||+|||||||| ||+|++|||+||||+
T Consensus 66 ~~~~~~~~Y~~-~GGKrlRp~Lvl~~~~~~g~~~~~~~~~~~a~~lA~aiEliH~asLIHDDI--mD~s~~RRG~pt~h~ 142 (395)
T 2ihi_A 66 KYYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDI--MDKGEMRRNKYCWYL 142 (395)
T ss_dssp HHHHHHHHHHH-SSSCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCSEETTEECGGG
T ss_pred HHHHHHHHhhc-cCcccHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCCCCCCCCccc
Confidence 46678899987 999999999999999999875 246789999999999999999999 999999999999999
Q ss_pred hcChhH--HHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhh-h-----------------
Q 038404 96 VFGEDT--AILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDID-S----------------- 155 (287)
Q Consensus 96 ~~G~~~--Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~-~----------------- 155 (287)
.||++. |||+||+|++.+|+++++...+. ....+++..++.++ .+++.||.+|+. |
T Consensus 143 ~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~--~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~ 218 (395)
T 2ihi_A 143 LKDVETKNAVNDVLLLYNSIYKLIEIYLRNE--SCYVDVIATFRDAT--LKTIIGQHLDTNIFSDKYSDAHREIDVNNIN 218 (395)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTHHHHHHHHHHHH--HHHHHHHHHHHHTTSHHHHCSSSCCCTTCCC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHH--HHHHHhHHHHHHhhhhccccccccccccccc
Confidence 999998 99999999999999998742211 12334455555555 689999999992 2
Q ss_pred ---cCC----CCCHHHHHHHHhcchHHH-HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHHHHHhhhccccchhhh
Q 038404 156 ---EGK----DVSLNELENIHLHKTAKL-LEAAVVCGVIIGGGNMIE--VERVRKYARCIGLLFQVVDDILDVTKSSKEL 225 (287)
Q Consensus 156 ---~~~----~~~~~~~~~i~~~KTg~l-~~~~~~~ga~la~~~~~~--~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~ 225 (287)
... .+++++|..|+.+|||+| |.+||++|++++|++++. .+.++.||.++|+||||+||++|++++++.+
T Consensus 219 ~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~ 298 (395)
T 2ihi_A 219 VPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKT 298 (395)
T ss_dssp CC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred ccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHh
Confidence 121 478999999999999999 999999999999998887 8899999999999999999999999999999
Q ss_pred CCccchhhhcCCCcHHHHHh------------------------------------HHHHHHHHHHHHHHHHHHhhccCc
Q 038404 226 GKTAGKDLVSDKATYPKLMG------------------------------------IENARKFACDLLAQATEELAYFEV 269 (287)
Q Consensus 226 GK~~~~Dl~~gk~T~p~~~~------------------------------------l~~a~~~~~~~~~~A~~~L~~l~~ 269 (287)
|| .|+|+++||+|||++++ ++++++.++++.++|++.|+.+|+
T Consensus 299 GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~ 377 (395)
T 2ihi_A 299 GK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHH 377 (395)
T ss_dssp -----CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99 99999999999999984 456677888999999999999966
Q ss_pred -ccHHHHHHHHHHHHhcc
Q 038404 270 -ARAAPLYHLAYYIASRQ 286 (287)
Q Consensus 270 -~~~~~L~~l~~~~~~R~ 286 (287)
..++.|..|++++.+|.
T Consensus 378 ~~~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 378 EGIEYVLKYLLEILFTGV 395 (395)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred chHHHHHHHHHHHHhccC
Confidence 56799999999999983
No 39
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=3e-60 Score=445.00 Aligned_cols=275 Identities=22% Similarity=0.256 Sum_probs=230.0
Q ss_pred HHHHHHHHhHHhccC------CcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCC-------------CchhHhHHHH--
Q 038404 5 AKRVNKALDETVQLR------HPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGG-------------DESSAMPVAC-- 63 (287)
Q Consensus 5 ~~~i~~~l~~~~~~~------~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~-------------~~~~~~~~A~-- 63 (287)
.+.|++.|.+.+... .+.++.++++|.+ .||||+||++|+++++++|+ +++.++++|+
T Consensus 33 ~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~-~GGKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~ 111 (390)
T 3dyh_A 33 YDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVC 111 (390)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccchhHHHHHHHHHHhhc-CCccchhHHHHHHHHHHhCCccccccccccccCCHHHHHHHHHhh
Confidence 456666666665431 1247899999998 99999999999999999886 2345666666
Q ss_pred --HHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHhHHHHHHH--HHHHHcccCCCCHHHHHHHHHHHHHH
Q 038404 64 --ALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLA--FEHVAAKSTEISPDRVVRAIAELGSA 139 (287)
Q Consensus 64 --avEliH~asLihDDI~~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a--~~~l~~~~~~~~~~~~~~~~~~~~~~ 139 (287)
||||||+|||||||| ||+|++|||+||||+.||+++||++||+++..+ |+++++...+.+ ...+++..++.+
T Consensus 112 g~avEliH~asLIHDDI--mD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~--~~~~~~~~~~~~ 187 (390)
T 3dyh_A 112 GWMIEFLQAHYLVEDDI--MDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRP--FLQDLLCRFNRV 187 (390)
T ss_dssp HHHHHHHHHHHHHHHHH--HHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCT--THHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCC--cCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCch--hHHHHHHHHHHH
Confidence 799999999999999 999999999999999999999999999999754 688876422111 123344444444
Q ss_pred hhhhhhhhhhhhhhhhc-----------C------CCCCHHHHHHHHhcchHHH-HHHHHHHHHHhcCCCHHH-HHHHHH
Q 038404 140 VGSEGLVAGEIMDIDSE-----------G------KDVSLNELENIHLHKTAKL-LEAAVVCGVIIGGGNMIE-VERVRK 200 (287)
Q Consensus 140 ~g~~~~~~GQ~~d~~~~-----------~------~~~~~~~~~~i~~~KTg~l-~~~~~~~ga~la~~~~~~-~~~l~~ 200 (287)
+ ..++.||.+|+.+. . ..+++++|..|+++|||+| |++||++|++++|++++. .+.+++
T Consensus 188 ~--~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~ 265 (390)
T 3dyh_A 188 D--YTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEE 265 (390)
T ss_dssp H--HHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHH
T ss_pred H--HHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 4 67899999999872 1 1378999999999999999 999999999999988775 788999
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHh-----------------------------------
Q 038404 201 YARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMG----------------------------------- 245 (287)
Q Consensus 201 ~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~----------------------------------- 245 (287)
||.++|+||||+||++|+++|++.+|| +|+|+++||+|||++++
T Consensus 266 ~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g 344 (390)
T 3dyh_A 266 LAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEAD 344 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999 99999999999999983
Q ss_pred -HHHHHHHHHHHHHHHHHHhhccCccc---HHHHHHHHHHHHhccC
Q 038404 246 -IENARKFACDLLAQATEELAYFEVAR---AAPLYHLAYYIASRQH 287 (287)
Q Consensus 246 -l~~a~~~~~~~~~~A~~~L~~l~~~~---~~~L~~l~~~~~~R~~ 287 (287)
++++++.++++.++|++.|+.+|... ++.|..|++++++|++
T Consensus 345 ~~~~~~~~~~~~~~~a~~~i~~l~~~~~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 345 LQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHcCCC
Confidence 45567778899999999999996544 6899999999999975
No 40
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=4.7e-59 Score=438.70 Aligned_cols=251 Identities=24% Similarity=0.339 Sum_probs=198.7
Q ss_pred HHHHHHHhhhCCCCchHHHHHHHHHHHhCCCc------hhHhHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhc
Q 038404 24 IHEAMRYSLLAGGKRVRPVLCIASCELVGGDE------SSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVF 97 (287)
Q Consensus 24 l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~------~~~~~~A~avEliH~asLihDDI~~~D~s~~RRg~pt~h~~~ 97 (287)
+..++.|.+ .||||+||++|+++++++++.. +.++++|+||||+|+|||||||| ||+|++|||+||+|++|
T Consensus 68 ~~~~~~Y~~-~GGKRlRP~l~l~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDI--mD~s~~RRG~pt~h~~~ 144 (395)
T 3mav_A 68 YKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDI--MDKGEMRRNKYCWYLLK 144 (395)
T ss_dssp HHHHHHHHH-SSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCSEETTEECGGGST
T ss_pred HHHHHhcCC-CCchhhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhHH--hcCCCCCCCchhhhhcc
Confidence 444566776 6999999999999999997642 56789999999999999999999 99999999999999999
Q ss_pred ChhHHHHHhHHHH--HHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC-----------------
Q 038404 98 GEDTAILAGDALL--SLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK----------------- 158 (287)
Q Consensus 98 G~~~Ail~gd~L~--~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~----------------- 158 (287)
|++.||++||+|+ +.++.++.....+ .....+++..++.++ ..++.||.+|+.+...
T Consensus 145 g~~~Ail~GD~ll~~~~~~~ll~~~~~~--~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~ 220 (395)
T 3mav_A 145 DVETKNAVNDVLLLYNSIYKLIEIYLRN--ESCYVDVIATFRDAT--LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVP 220 (395)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHH--HHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSC
T ss_pred chHHHHHhhhHHHHHHHHHHHHHHhccC--hhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccchhHHHHhhhcccccc
Confidence 9999999999977 4567777664322 123445566666665 7899999999975321
Q ss_pred --------CCCHHHHHHHHhcchHHH-HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCC
Q 038404 159 --------DVSLNELENIHLHKTAKL-LEAAVVCGVIIGGGN--MIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGK 227 (287)
Q Consensus 159 --------~~~~~~~~~i~~~KTg~l-~~~~~~~ga~la~~~--~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK 227 (287)
.+++++|..|+.+|||+| |.+||.+|++++|++ +...+.+++||.++|+||||+||++|+++|++.+||
T Consensus 221 e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK 300 (395)
T 3mav_A 221 EQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK 300 (395)
T ss_dssp CCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred hhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcc
Confidence 168999999999999999 999999999999874 446789999999999999999999999999999999
Q ss_pred ccchhhhcCCCcHHHHHhHH------------------------------------HHHHHHHHHHHHHHHHhhccCccc
Q 038404 228 TAGKDLVSDKATYPKLMGIE------------------------------------NARKFACDLLAQATEELAYFEVAR 271 (287)
Q Consensus 228 ~~~~Dl~~gk~T~p~~~~l~------------------------------------~a~~~~~~~~~~A~~~L~~l~~~~ 271 (287)
+|+||++||+|||++++++ ++++.++++.++|.+.|+.+|..
T Consensus 301 -~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~- 378 (395)
T 3mav_A 301 -VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHE- 378 (395)
T ss_dssp -CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCCH-
T ss_pred -cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCcH-
Confidence 5999999999999998543 44566778888999999988653
Q ss_pred HHHHHHHHHHHHhc
Q 038404 272 AAPLYHLAYYIASR 285 (287)
Q Consensus 272 ~~~L~~l~~~~~~R 285 (287)
.++.+.+++++|
T Consensus 379 --~l~~ll~~lle~ 390 (395)
T 3mav_A 379 --GIEYVLKYLLEI 390 (395)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 345555555544
No 41
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=3.7e-58 Score=412.33 Aligned_cols=248 Identities=27% Similarity=0.464 Sum_probs=220.5
Q ss_pred HHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCCC
Q 038404 4 KAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDN 83 (287)
Q Consensus 4 ~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D~ 83 (287)
..+.|++.|.+.++...|..+.++++|++..||||+||.||+++++++|++++.+.++|++||+||+||||||||||+|+
T Consensus 8 ~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~~dD~ 87 (274)
T 3kra_B 8 IEADIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLTDG 87 (274)
T ss_dssp HHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCCCSSS
T ss_pred HHHHHHHHHHHHcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 34678889999998777777999999999999999999999999999999999999999999999999999999965566
Q ss_pred CCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCC---CCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC
Q 038404 84 DDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTE---ISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDV 160 (287)
Q Consensus 84 s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~ 160 (287)
+ .|||+||+|.+||+++|||+||+|++.||+.+++.... .++..+++++.++++++|..+++.||.+|+.+..+.+
T Consensus 88 d-~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~~~ 166 (274)
T 3kra_B 88 S-RPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNT 166 (274)
T ss_dssp S-SCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCTTSS
T ss_pred c-cCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhccCCCC
Confidence 5 69999999999999999999999999999999986432 2245678889999999888889999999999887668
Q ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcH
Q 038404 161 SLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATY 240 (287)
Q Consensus 161 ~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~ 240 (287)
++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||.+ .||
T Consensus 167 t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~~--------~~~------------- 225 (274)
T 3kra_B 167 SLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKN--------SHQ------------- 225 (274)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTT--------TSC-------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhc--------ccc-------------
Confidence 99999999999999999999999999999999999999999999999999999971 122
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHH
Q 038404 241 PKLMGIENARKFACDLLAQATEELAYFEVARAAPLYHLA 279 (287)
Q Consensus 241 p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~ 279 (287)
+++.+.++++.++|++.|+.|+.+...+|..|+
T Consensus 226 ------~~~~~~~~~~~~~A~~~L~~~~~~~~~pl~~~~ 258 (274)
T 3kra_B 226 ------LIDENIIGKLKELALEELGGFHGKNAELMSSLV 258 (274)
T ss_dssp ------CCCHHHHHHHHHHHHHHHTTSCSSHHHHTGGGG
T ss_pred ------HHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHH
Confidence 445778999999999999999876667776654
No 42
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=5.6e-59 Score=431.86 Aligned_cols=268 Identities=17% Similarity=0.170 Sum_probs=227.1
Q ss_pred HHHHHHHHhHHhccC----Cc-----HHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCC----chhHhHHHHHHHHHHHH
Q 038404 5 AKRVNKALDETVQLR----HP-----AKIHEAMRYSLLAGGKRVRPVLCIASCELVGGD----ESSAMPVACALEMIHTM 71 (287)
Q Consensus 5 ~~~i~~~l~~~~~~~----~~-----~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~----~~~~~~~A~avEliH~a 71 (287)
.+.+.+.|.+.+... .| .++.++++|.+ .||||+||.+|+++++++|+. .+.+.++|++|||+|+|
T Consensus 32 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~y~~-~GGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~A~avEllH~a 110 (368)
T 2her_A 32 YDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQAL 110 (368)
T ss_dssp HHHHHHHHHTTCCCCTTSCCTTTTHHHHHHHHHHHHT-TSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHhh-CCCCccchHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence 445555555554321 23 56777888876 999999999999999999863 36789999999999999
Q ss_pred HHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHhHHHH---HHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 038404 72 SLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALL---SLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAG 148 (287)
Q Consensus 72 sLihDDI~~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~---~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G 148 (287)
||||||| ||+|++|||+||||++||+..|||+||+|+ +.+|+++++... .....+++..+++++ .+++.|
T Consensus 111 sLIHDDI--mD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~---~~~~~~~~~~~~~~~--~~~~~G 183 (368)
T 2her_A 111 ILIADDI--MDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFG---NDIVMKIQKIYNESI--FFTVLG 183 (368)
T ss_dssp HHHHHHH--HTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHC---HHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHccc--ccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcC---cChHHHHHHHHHHHH--HHHHHH
Confidence 9999999 999999999999999999999999999999 888988876311 111456666667766 789999
Q ss_pred hhhhhhhcCC--CCCH-HHHHHHHhcchHHH-HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHHHHHhhhccccch
Q 038404 149 EIMDIDSEGK--DVSL-NELENIHLHKTAKL-LEAAVVCGVIIGGGNMIE--VERVRKYARCIGLLFQVVDDILDVTKSS 222 (287)
Q Consensus 149 Q~~d~~~~~~--~~~~-~~~~~i~~~KTg~l-~~~~~~~ga~la~~~~~~--~~~l~~~g~~lG~afQi~DD~ld~~~~~ 222 (287)
|.+|+.+... ..+. ++|..|+++|||+| |++||++|++++|++++. .+.+++||.++|+||||+||++|++
T Consensus 184 Q~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~--- 260 (368)
T 2her_A 184 QHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL--- 260 (368)
T ss_dssp HHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999988753 2444 89999999999999 999999999999998887 8899999999999999999999998
Q ss_pred hhhCCccchhhhcCCCcHHHHH--------------------------------hHHHHHHHHHHHHHHHHHHhhccCc-
Q 038404 223 KELGKTAGKDLVSDKATYPKLM--------------------------------GIENARKFACDLLAQATEELAYFEV- 269 (287)
Q Consensus 223 ~~~GK~~~~Dl~~gk~T~p~~~--------------------------------~l~~a~~~~~~~~~~A~~~L~~l~~- 269 (287)
.+|| .|+||++||+|||+++ +++++++.++++.++|++.|+.+|.
T Consensus 261 -~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~ 338 (368)
T 2her_A 261 -FNDS-NADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDD 338 (368)
T ss_dssp -SCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCH
T ss_pred -hcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 7899 8999999999999997 3456778889999999999999965
Q ss_pred ccHHHHHHHHHHHHhc
Q 038404 270 ARAAPLYHLAYYIASR 285 (287)
Q Consensus 270 ~~~~~L~~l~~~~~~R 285 (287)
..++.|..|++++.++
T Consensus 339 ~~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 339 SLQKVFIHLIHQISEL 354 (368)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4568999999999876
No 43
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=3.6e-58 Score=428.66 Aligned_cols=255 Identities=18% Similarity=0.221 Sum_probs=212.6
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCC----chhHhHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCccchhhhc
Q 038404 22 AKIHEAMRYSLLAGGKRVRPVLCIASCELVGGD----ESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVF 97 (287)
Q Consensus 22 ~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~----~~~~~~~A~avEliH~asLihDDI~~~D~s~~RRg~pt~h~~~ 97 (287)
.++.++++|.+ .||||+||.+|+++++++++. .+.++++||||||+|+|||||||| ||+|++|||+||+|++|
T Consensus 58 ~~~~~~l~Y~~-~GGKrlRp~l~~~~~~~~~~~~~~~~e~~~~la~aiEliH~asLiHDDi--mD~s~~RRG~pt~h~~~ 134 (368)
T 2q58_A 58 EYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDI--MDSGKFRRGAPCWYIVH 134 (368)
T ss_dssp HHHHHHHHHHT-TCSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCEETTEECHHHHT
T ss_pred HHHHHHHhcCC-CCccchhHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCCCCCccccCc
Confidence 35778999987 799999999999999999863 367889999999999999999999 99999999999999999
Q ss_pred ChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC---CCCHHHHHHHHhcchH
Q 038404 98 GEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK---DVSLNELENIHLHKTA 174 (287)
Q Consensus 98 G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~---~~~~~~~~~i~~~KTg 174 (287)
|++.|||+||+|++.||+++.++....+.+...+++..++.++ ..++.||.+|+.+... +.++++|..|+.+|||
T Consensus 135 G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa 212 (368)
T 2q58_A 135 GQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTS 212 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTH
T ss_pred chhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHH--HHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhc
Confidence 9999999999999999999987543334455667777777776 7899999999987643 2568899999999999
Q ss_pred HH-HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHH----
Q 038404 175 KL-LEAAVVCGVIIGG--GNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIE---- 247 (287)
Q Consensus 175 ~l-~~~~~~~ga~la~--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~---- 247 (287)
+| |.+|+.+|++++| ++++..+.+++||.++|+||||+||++|+++ ||+.|+|+++||+|||++++++
T Consensus 213 ~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p~i~al~~~~~ 287 (368)
T 2q58_A 213 RYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADE 287 (368)
T ss_dssp HHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHHHHSSTTTCCH
T ss_pred cccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHHHHHHHHhCCH
Confidence 98 8999999999998 5667778899999999999999999999975 8999999999999999998543
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHhhccCcc-cHH----HHHHHHHHHHhcc
Q 038404 248 ----------------------------NARKFACDLLAQATEELAYFEVA-RAA----PLYHLAYYIASRQ 286 (287)
Q Consensus 248 ----------------------------~a~~~~~~~~~~A~~~L~~l~~~-~~~----~L~~l~~~~~~R~ 286 (287)
.+.+..+++.+++.+.++.+++. .++ .|.++++|++.|+
T Consensus 288 ~~r~~L~~~~~~~~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~~k~~l~~ll~kI~~~~~~rk 359 (368)
T 2q58_A 288 EMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISELITNSR 359 (368)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhh
Confidence 22344566777888888888543 233 4566677777664
No 44
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=9.3e-56 Score=396.76 Aligned_cols=244 Identities=26% Similarity=0.442 Sum_probs=217.4
Q ss_pred HHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCCCC
Q 038404 5 AKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDND 84 (287)
Q Consensus 5 ~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D~s 84 (287)
.+.|++.|.+.++...|..+.++++|.+..||||+||.||+++++++|++.+.+.++|++|||||+|||||||| +|+|
T Consensus 14 ~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI--~D~d 91 (273)
T 3qkc_B 14 ESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAYTHENL--PLTD 91 (273)
T ss_dssp HHHHHHHHHHHSCCCCSSTTHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGTHHHHHHHHHHHHHHHHHHSC--CBTT
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCc--ccCc
Confidence 46788899999887677679999999999999999999999999999999999999999999999999999999 6777
Q ss_pred CCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCC--CCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCH
Q 038404 85 DFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTE--ISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSL 162 (287)
Q Consensus 85 ~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~~~~~ 162 (287)
. |||+||+|.+||+++|||+||+|++.||+.+++.... .++..+++++.++++++|..+++.||.+|+.+. ...+.
T Consensus 92 ~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~-~~~~~ 169 (273)
T 3qkc_B 92 G-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLN-QLNDL 169 (273)
T ss_dssp B-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCC-SSCCH
T ss_pred c-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHhcC-CCCCH
Confidence 7 9999999999999999999999999999999985421 235677888999999888889999999999984 34678
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHH
Q 038404 163 NELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPK 242 (287)
Q Consensus 163 ~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~ 242 (287)
++++.|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||+.+- .
T Consensus 170 eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~~---~-------------------- 226 (273)
T 3qkc_B 170 ELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRSG---F-------------------- 226 (273)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCST---T--------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc---h--------------------
Confidence 88888889999999999999999999999999999999999999999999999731 0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHH
Q 038404 243 LMGIENARKFACDLLAQATEELAYFEVARAAPLYHLAYYI 282 (287)
Q Consensus 243 ~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~ 282 (287)
.++++++.++|+++|..|+++...+|..+++|-
T Consensus 227 -------~~~~~~~~~~a~~~l~~~~~~~~~~l~~~~~~~ 259 (273)
T 3qkc_B 227 -------EGRIKELKELAVKELESFGGEKIELIRGVFELE 259 (273)
T ss_dssp -------HHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTC-
T ss_pred -------HHHHHHHHHHHHHHHHccCchhhhHHHHHHHHH
Confidence 167899999999999999876668899888764
No 45
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=8.2e-57 Score=403.57 Aligned_cols=213 Identities=26% Similarity=0.395 Sum_probs=184.0
Q ss_pred chHHHHHHHHHhHHhccCCcHHHHHHHHHhhhCCCCchHHHHHHHHHHHhCC---CchhHhHHHHHHHHHHHHHHHHhCC
Q 038404 2 TSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGG---DESSAMPVACALEMIHTMSLVHDDL 78 (287)
Q Consensus 2 ~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~---~~~~~~~~A~avEliH~asLihDDI 78 (287)
+++++.|++.|.+.++...|+.+.++++|.+..||||+||.+|+++++++|+ +.+.+.++|++||+||+||||||||
T Consensus 11 ~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~Lvll~~~~~g~~~~~~~~~~~~A~aiEliH~aSLIHDDI 90 (285)
T 4fp4_A 11 LAALERVKARLNKVGEELEPISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELLHVVSLLQDDV 90 (285)
T ss_dssp HHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4568899999999998754677999999999999999999999999999998 7888999999999999999999999
Q ss_pred CCCCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 038404 79 PCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGK 158 (287)
Q Consensus 79 ~~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~GQ~~d~~~~~~ 158 (287)
||+|++|||+||+|.+||++.|||+||+|++.||+.++++ ++ +++..+++++ .+++.||.+|+.+...
T Consensus 91 --mD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~----~~----~~~~~ls~~~--~~~~~GQ~lDl~~~~~ 158 (285)
T 4fp4_A 91 --MDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNL----GA----DVVTYLADVA--QRLSVGQALDLEGERD 158 (285)
T ss_dssp --HTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTT----CH----HHHHHHHHHH--HHHHHHHHHHHTTCHH
T ss_pred --CCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHh----hH----HHHHHHHHHH--HHHHHhHHHHHhcccc
Confidence 9999999999999999999999999999999999999974 22 4455566666 6899999999987642
Q ss_pred CCCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcC
Q 038404 159 DVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSD 236 (287)
Q Consensus 159 ~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~g 236 (287)
. |+++|||+||++||++|++++|++ +..+.+++||.++|+||||+||++|++++++ .||+.++||+++
T Consensus 159 -----~---~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 159 -----K---AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp -----H---HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred -----c---hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 1 889999999999999999999998 8888999999999999999999999999765 678889998877
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=96.27 E-value=0.28 Score=43.44 Aligned_cols=121 Identities=14% Similarity=0.065 Sum_probs=69.7
Q ss_pred hhhhhhhhhhhhhcCCCCCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 038404 143 EGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSS 222 (287)
Q Consensus 143 ~~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~ 222 (287)
..++.|...|+.... ..|++++..-+.+=.|+...+++. +++..+++ ...++.++|.|+|+.|=+.|+-.|-
T Consensus 107 ~~li~g~~~Dl~~~~-~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv~eD~ 178 (294)
T 4hd1_A 107 LRLIEANRRDQRKHT-YDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDIDRDL 178 (294)
T ss_dssp HHHHHHHHHHHHCSB-CCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhccccCC-CCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhchhhh
Confidence 356788888886543 257777765443333444444333 34444443 3467889999999999888874332
Q ss_pred hhhCCc------------cchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCcccH
Q 038404 223 KELGKT------------AGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYFEVARA 272 (287)
Q Consensus 223 ~~~GK~------------~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~~~~ 272 (287)
. .|.- .-+|+..++.|-.+.-.++.--..++.+.++|...+..+|....
T Consensus 179 ~-~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r 239 (294)
T 4hd1_A 179 A-LGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLA 239 (294)
T ss_dssp H-TTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHH
T ss_pred c-cCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 1 1210 02233333333333334444556677888888888888875443
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=96.10 E-value=0.35 Score=43.92 Aligned_cols=113 Identities=13% Similarity=0.036 Sum_probs=71.5
Q ss_pred hhhhhhhhhhhhcCCCCCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Q 038404 144 GLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSK 223 (287)
Q Consensus 144 ~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~ 223 (287)
.+..|-..|+.. .-.|.++++.-+.+=.|....+++.+-..-...++. .......+.++|.|+|+.|=+.|+
T Consensus 122 ~m~~gm~~dl~~--~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQltNilRDv----- 193 (343)
T 3vj8_A 122 RMGIGMAEFLDK--HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKTNIIRDY----- 193 (343)
T ss_dssp HHHHHHHHGGGC--CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHHHHHHTH-----
T ss_pred HHHHHHHHhccC--CCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHHHHHHHh-----
Confidence 345566667652 225788777655555566666666654443222232 334568899999999999988877
Q ss_pred hhCCccchhhhcCCCcHHH----------------------HHhHHHHHHHHHHHHHHHHHHhhccCcc
Q 038404 224 ELGKTAGKDLVSDKATYPK----------------------LMGIENARKFACDLLAQATEELAYFEVA 270 (287)
Q Consensus 224 ~~GK~~~~Dl~~gk~T~p~----------------------~~~l~~a~~~~~~~~~~A~~~L~~l~~~ 270 (287)
+.|+..|++-||. .-.+..-...++.++.+|...+..+++.
T Consensus 194 ------~eD~~~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~~ 256 (343)
T 3vj8_A 194 ------LEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQ 256 (343)
T ss_dssp ------HHHHHTTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCH
T ss_pred ------HHHHhCCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3444445554443 3345555666778888888888888653
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=95.21 E-value=0.16 Score=44.90 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=71.8
Q ss_pred hhhhhhhhhhhhcCCCCCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Q 038404 144 GLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSK 223 (287)
Q Consensus 144 ~~~~GQ~~d~~~~~~~~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~ 223 (287)
.++.|...|+.... -.|.++++.-+.+=.|....+++.+ ++..+. ......+.++|.|+|+.|=+.|+
T Consensus 112 ~li~g~~~Dl~~~~-~~t~~dL~~Yc~~vAg~VG~l~~~l---~g~~~~---~~~~~~A~~lG~AlQltNilRDv----- 179 (293)
T 3acx_A 112 NLIDTVYKDQHFTM-FETDAELFGYCYGVAGTVGEVLTPI---LSDHET---HQTYDVARRLGESLQLINILRDV----- 179 (293)
T ss_dssp HHHHHHHHHTTCCC-CSSHHHHHHHHHHHTHHHHHHHHHH---HCSSCC---HHHHHHHHHHHHHHHHHHHHHCH-----
T ss_pred HHHHHHHHHcCCCC-CCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCc---HHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 46677778876432 2577777765544445555555443 233331 23567999999999999977777
Q ss_pred hhCCccchhhhcCCCcHHHH----------------------HhHHHHHHHHHHHHHHHHHHhhccCcccH
Q 038404 224 ELGKTAGKDLVSDKATYPKL----------------------MGIENARKFACDLLAQATEELAYFEVARA 272 (287)
Q Consensus 224 ~~GK~~~~Dl~~gk~T~p~~----------------------~~l~~a~~~~~~~~~~A~~~L~~l~~~~~ 272 (287)
+.|...|++-+|.- -.+..--..++.++.+|...+..+|...+
T Consensus 180 ------~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r 244 (293)
T 3acx_A 180 ------GEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQ 244 (293)
T ss_dssp ------HHHHHTTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHH
T ss_pred ------HHHHhCCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH
Confidence 55666677777652 13334455677888888888888876544
No 49
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=93.86 E-value=0.68 Score=42.45 Aligned_cols=111 Identities=9% Similarity=-0.043 Sum_probs=62.6
Q ss_pred hhhhhhhhhhhhhcC--CCCCHHHHHHHHhcchHHHHHHH-HHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHhhhc
Q 038404 143 EGLVAGEIMDIDSEG--KDVSLNELENIHLHKTAKLLEAA-VVCGVIIGGGNMIEV--ERVRKYARCIGLLFQVVDDILD 217 (287)
Q Consensus 143 ~~~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~l~~~~-~~~ga~la~~~~~~~--~~l~~~g~~lG~afQi~DD~ld 217 (287)
..++.+-..+..|.. ..++.++|..+.+.-+|..+.++ +.++.- -...++.. ..+.++-...+...-+.||+..
T Consensus 187 ~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S 265 (382)
T 3kb9_A 187 HTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSG-CELPDAVRKHPAYRRAALLSQEFAAWYNDLCS 265 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666542 23889999887543334322222 222211 12344433 2466778888999999999999
Q ss_pred cccchhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHhh
Q 038404 218 VTKSSKELGKTAGKDLVSDKA-TYPKLM------GIENARKFACDLLAQATEELA 265 (287)
Q Consensus 218 ~~~~~~~~GK~~~~Dl~~gk~-T~p~~~------~l~~a~~~~~~~~~~A~~~L~ 265 (287)
|..+.+ +|.. +...++ ..+.|.+.+.+.++++.+.+.
T Consensus 266 ~~kE~~-----------~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~ 309 (382)
T 3kb9_A 266 LPKEIA-----------GDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFL 309 (382)
T ss_dssp HHHHHH-----------TTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-----------cCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 864322 2222 444443 456666666666665555444
No 50
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=91.26 E-value=7.4 Score=34.36 Aligned_cols=111 Identities=7% Similarity=-0.017 Sum_probs=62.1
Q ss_pred hhhhhhhhhhhhhcCCC--C-CHHHHHHHHhcchHHH-HHHH-HHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHHHHhh
Q 038404 143 EGLVAGEIMDIDSEGKD--V-SLNELENIHLHKTAKL-LEAA-VVCGVIIGGGNMIEVE--RVRKYARCIGLLFQVVDDI 215 (287)
Q Consensus 143 ~~~~~GQ~~d~~~~~~~--~-~~~~~~~i~~~KTg~l-~~~~-~~~ga~la~~~~~~~~--~l~~~g~~lG~afQi~DD~ 215 (287)
...+.+-..+..|.... + +.++|..+. ..|+.. +.++ +.++. -...+++..+ .+.++-...+...-+.||+
T Consensus 144 ~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r-~~s~g~~~~~~~~~~~~-g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl 221 (337)
T 1ps1_A 144 RNYFDGYVDEAESRFWNAPCDSAAQYLAMR-RHTIGVQPTVDLAERAG-RFEVPHRVFDSAVMSAMLQIAVDVNLLLNDI 221 (337)
T ss_dssp HHHHHHHHHHHTTC-------CHHHHHHHH-HHHTCHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHc-ccccchhhHHHHHHHHc-CCCCCHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 44566666666665433 7 899998875 444433 2222 22221 1113344332 4567888888899999999
Q ss_pred hccccchhhhCCccchhhhcCC-CcHHHHH------hHHHHHHHHHHHHHHHHHHhhc
Q 038404 216 LDVTKSSKELGKTAGKDLVSDK-ATYPKLM------GIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 216 ld~~~~~~~~GK~~~~Dl~~gk-~T~p~~~------~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
..|..+. .+|. .+...++ ..+.|.+.+.+.++++.+.+..
T Consensus 222 ~S~~kE~-----------~~G~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~~ 268 (337)
T 1ps1_A 222 ASLEKEE-----------ARGEQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQYLL 268 (337)
T ss_dssp HTHHHHH-----------HTTCCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH-----------hcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9886432 2233 3554444 4667777777776666665543
No 51
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=89.52 E-value=2.5 Score=37.22 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCc
Q 038404 192 MIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYFEV 269 (287)
Q Consensus 192 ~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~~ 269 (287)
.+....+...-+-+=.+.-|.||+.| .+|+|.|++|+-..++...|--...-+...|.+.+..+++
T Consensus 67 ~~~~~~~A~aiEliH~aSLIHDDImD------------~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~ 132 (285)
T 4fp4_A 67 DPRILEAAAIVELLHVVSLLQDDVMD------------QHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA 132 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCC------------CCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444566667778889999999977 5678899999999998888777777778888888877643
No 52
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=88.32 E-value=15 Score=33.51 Aligned_cols=49 Identities=24% Similarity=0.132 Sum_probs=28.3
Q ss_pred hhCCCCchHHHHH---HHHHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 038404 32 LLAGGKRVRPVLC---IASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDNDD 85 (287)
Q Consensus 32 ~~~gGKr~Rp~l~---l~~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D~s~ 85 (287)
+...+|++.|.+- .++++.+-.-+.+.+.+ +=...++..+.||+ .|++.
T Consensus 56 l~~~~~~l~~~~~t~~~laar~YP~a~~e~l~l---iad~~~~~F~lDD~--~d~~~ 107 (374)
T 1yyq_A 56 LKVDPKRLQASLQTIVGMVVYSWAKVSKECMAD---LSIHYTYTLVLDDS--KDDPY 107 (374)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHSTTSCHHHHHH---HHHHHHHHHHHTTC--CSCSH
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCCCHHHHHH---HHHHHHHHHhhccc--ccCcH
Confidence 3345678777553 34555554333333322 33667788889999 77753
No 53
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=87.16 E-value=4.5 Score=36.30 Aligned_cols=67 Identities=12% Similarity=-0.019 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 038404 189 GGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYF 267 (287)
Q Consensus 189 ~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l 267 (287)
|.+.+....+...-..+=.++-|.||+.| .+|++.|++|+-..++...|--.-.-+...|...+...
T Consensus 63 g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 129 (334)
T 3rmg_A 63 GAVTPATLHAAVSLELLHTASLVHDDVVD------------ESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQT 129 (334)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhC
Confidence 43444444566667788889999999977 56889999999999887766655555666666666554
No 54
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=86.81 E-value=3.9 Score=36.88 Aligned_cols=72 Identities=13% Similarity=-0.012 Sum_probs=47.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 038404 184 GVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEE 263 (287)
Q Consensus 184 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~ 263 (287)
++.+.|.+.+....+...-..+=.++-|.||+.| .+|++.|++|+-..++...|--.-.-+...|.+.
T Consensus 64 ~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~ 131 (341)
T 3mzv_A 64 AARLVGYGGPFHVHLAATVEFIHTATLLHDDVVD------------ESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQL 131 (341)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHH
Confidence 3333444444445566677778889999999977 5678899999999888777766666677777777
Q ss_pred hhcc
Q 038404 264 LAYF 267 (287)
Q Consensus 264 L~~l 267 (287)
+...
T Consensus 132 l~~~ 135 (341)
T 3mzv_A 132 MTDT 135 (341)
T ss_dssp HGGG
T ss_pred HHhC
Confidence 7665
No 55
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=86.51 E-value=3.1 Score=37.72 Aligned_cols=74 Identities=19% Similarity=0.094 Sum_probs=55.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 038404 183 CGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATE 262 (287)
Q Consensus 183 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~ 262 (287)
+++.+.|.+.+....+...-.-+=.++-|.||+.| .+|++.|++|+-..++...|--.-.-+...|.+
T Consensus 64 l~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 131 (352)
T 3nf2_A 64 LSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMD------------GDEQRRHRDTVWKVHGPAQAILVGDALFALANE 131 (352)
T ss_dssp HHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC------------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHH
Confidence 33444455555455566667777788999999988 567889999999999888777777777788888
Q ss_pred HhhccC
Q 038404 263 ELAYFE 268 (287)
Q Consensus 263 ~L~~l~ 268 (287)
.|..++
T Consensus 132 ~l~~~~ 137 (352)
T 3nf2_A 132 VLLELG 137 (352)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 887774
No 56
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=86.10 E-value=6.1 Score=34.64 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhh--hccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 038404 189 GGNMIEVERVRKYARCIGLLFQVVDDI--LDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 189 ~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
|.+++..-.+...-+.+=.+.-|.||+ .| .+|+|.|++|+-..++...|--.-.-++..|.+.+..
T Consensus 62 g~~~~~~~~~A~avEliH~asLIHDDIP~~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~ 129 (284)
T 2ftz_A 62 GVEEEXLLDVAVAVELFHTASLIHDDLPPID------------NADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISX 129 (284)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhCCchhcC------------CCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 445554445666667777788899999 88 5678899999999998888777777777888888877
Q ss_pred cC
Q 038404 267 FE 268 (287)
Q Consensus 267 l~ 268 (287)
.+
T Consensus 130 ~~ 131 (284)
T 2ftz_A 130 IG 131 (284)
T ss_dssp TC
T ss_pred CC
Confidence 63
No 57
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=85.26 E-value=6.4 Score=34.75 Aligned_cols=71 Identities=21% Similarity=0.054 Sum_probs=55.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 038404 185 VIIGGGNMIEVERVRKYARCIGLLFQVVDDI--LDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATE 262 (287)
Q Consensus 185 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~ 262 (287)
+.+.|.+++....+...-..+=.+.=|.||+ +| .+|+|.|++|+-..++...|--.-.-+...|.+
T Consensus 53 ~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ 120 (297)
T 3m0g_A 53 AAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMD------------NDDLRRGLPTVHKKWDDATAVLAGDALQTLAFE 120 (297)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccC------------CCCccCCCCCchhhcChHHHHHHHHHHHHHHHH
Confidence 3444556666666667777788899999998 66 567899999999999888777777777888888
Q ss_pred Hhhcc
Q 038404 263 ELAYF 267 (287)
Q Consensus 263 ~L~~l 267 (287)
.+...
T Consensus 121 ~l~~~ 125 (297)
T 3m0g_A 121 LCTDP 125 (297)
T ss_dssp HTTCG
T ss_pred HHHHh
Confidence 88765
No 58
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=84.88 E-value=7.4 Score=34.35 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 038404 189 GGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYF 267 (287)
Q Consensus 189 ~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l 267 (287)
+.+++....+...-..+=.+.-|.||+.| .+|+|.|++|+-..++...|--...-+...|.+.+..+
T Consensus 41 ~~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~ 107 (301)
T 2q80_A 41 KVPEDKLQIIIEVTEMLHNASLLIDDIED------------NSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTL 107 (301)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHccccC------------CCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHC
Confidence 44555455566667777788899999987 56788999999999888777766667777777777766
No 59
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=84.87 E-value=4.3 Score=36.89 Aligned_cols=73 Identities=15% Similarity=0.013 Sum_probs=40.6
Q ss_pred HHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 038404 184 GVIIGG-GNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATE 262 (287)
Q Consensus 184 ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~ 262 (287)
++.+.+ .+.+....+...-..+=.+.-|.||+.| .+|++.|++|+-..++...|--.-.-+...|.+
T Consensus 85 ~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~ 152 (360)
T 3lmd_A 85 ASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMD------------EASMRRGVPSANARWDNSVAILAGDILLAHASG 152 (360)
T ss_dssp HHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcC------------CCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHH
Confidence 344444 4444444556667777788999999977 567889999998888766665555556666666
Q ss_pred HhhccC
Q 038404 263 ELAYFE 268 (287)
Q Consensus 263 ~L~~l~ 268 (287)
.+..++
T Consensus 153 ~l~~~~ 158 (360)
T 3lmd_A 153 LMSQLG 158 (360)
T ss_dssp HHHHHC
T ss_pred HHHHCC
Confidence 665553
No 60
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=84.76 E-value=3.2 Score=36.77 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=51.0
Q ss_pred HHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCcCccchhhhcChhHHHHHhHHHHHHHH
Q 038404 47 SCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMD------------NDDFRRGKPTNHKVFGEDTAILAGDALLSLAF 114 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D------------~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~ 114 (287)
++.+.|.+++....+...-+.+=.+.-|.||+ +| .++.+.||+|+-..+|...|--...-+..+|.
T Consensus 189 ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDi--lD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~ 266 (301)
T 1rtr_A 189 AADIANVDDTTKEHLESYSYHLGMMFQIKDDL--LDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAV 266 (301)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666667777888899999999 77 57889999999999998888888888888899
Q ss_pred HHHHccc
Q 038404 115 EHVAAKS 121 (287)
Q Consensus 115 ~~l~~~~ 121 (287)
+.|..+.
T Consensus 267 ~~L~~l~ 273 (301)
T 1rtr_A 267 DELTQID 273 (301)
T ss_dssp HHHHTSC
T ss_pred HHHHhCC
Confidence 8888764
No 61
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=84.31 E-value=5.6 Score=34.97 Aligned_cols=71 Identities=11% Similarity=0.019 Sum_probs=50.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHh-
Q 038404 186 IIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEEL- 264 (287)
Q Consensus 186 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L- 264 (287)
...|.+++....+...-+.+=.+.=|.||+.| .+|+|.|++|+-..++...|--.-.-+...|.+.+
T Consensus 62 ~~~g~~~~~~~~~A~avEliH~asLIHDDi~D------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~ 129 (289)
T 2azj_A 62 VALGGDIKDSYGGALAIEILHSASLALCDIVD------------LDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQ 129 (289)
T ss_dssp HHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT------------TCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCC------------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 33344444334455566667778889999977 56788999999998888777666666677777777
Q ss_pred hccC
Q 038404 265 AYFE 268 (287)
Q Consensus 265 ~~l~ 268 (287)
..++
T Consensus 130 ~~~~ 133 (289)
T 2azj_A 130 TSYG 133 (289)
T ss_dssp HHHC
T ss_pred hcCc
Confidence 5553
No 62
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=84.15 E-value=7.6 Score=34.83 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=52.3
Q ss_pred hcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 038404 187 IGG-GNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELA 265 (287)
Q Consensus 187 la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~ 265 (287)
+++ .+.+....+...-..+=.++=|.||+.| .+|++.|++|+-..++...|--...-+...|.+.+.
T Consensus 69 ~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~ 136 (334)
T 3pko_A 69 FGNAATPAQLQAGAAAIEILHVGTLIHDDVID------------DSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVL 136 (334)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHhCccCC------------CCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 444 3666555666777778889999999987 567889999999888887777666666777777776
Q ss_pred cc
Q 038404 266 YF 267 (287)
Q Consensus 266 ~l 267 (287)
..
T Consensus 137 ~~ 138 (334)
T 3pko_A 137 KS 138 (334)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 63
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=84.06 E-value=8.5 Score=34.31 Aligned_cols=67 Identities=19% Similarity=0.065 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhh--hccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 038404 189 GGNMIEVERVRKYARCIGLLFQVVDDI--LDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 189 ~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
|.+.+....+...-+.+=.+.=|.||+ +| .+|+|.|++|+-..++...|--.-.-+...|.+.|..
T Consensus 61 g~~~~~~~~~A~avEliH~aSLIHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~ 128 (317)
T 4f62_A 61 GDISSLTDASAAALESIHAYSLIHDDLPAMD------------NDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSN 128 (317)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHSTTSC------------C-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555666677788889999999 66 5688999999999998887776677777888888877
Q ss_pred c
Q 038404 267 F 267 (287)
Q Consensus 267 l 267 (287)
.
T Consensus 129 ~ 129 (317)
T 4f62_A 129 P 129 (317)
T ss_dssp T
T ss_pred c
Confidence 6
No 64
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=82.16 E-value=6.2 Score=35.44 Aligned_cols=68 Identities=24% Similarity=0.160 Sum_probs=51.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 038404 188 GGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYF 267 (287)
Q Consensus 188 a~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l 267 (287)
.|.+++....+...-..+=.++-|.||+.| .+|++.|++|+-..++...|--.-.-+...|.+.+..+
T Consensus 61 ~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 128 (342)
T 1wy0_A 61 VGGDPLRAIYPAVAIELIHNYSLVHDDIMD------------MDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARA 128 (342)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHCCccc------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHc
Confidence 344444334556666667778899999987 56788999999999988877777777788888888765
No 65
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=81.84 E-value=10 Score=34.03 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 038404 189 GGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYFE 268 (287)
Q Consensus 189 ~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~ 268 (287)
+.+++....+...-..+=.+.=|.||+.| .+|+|.|++|+-..++...|--.-.-+...|.+.+..++
T Consensus 56 ~~~~~~~~~~A~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 123 (340)
T 2e8v_A 56 NLPKDQLAIVSQIVELLHNSSLLIDDIED------------NAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLT 123 (340)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcC
Confidence 44555444566666667778889999977 567889999999999888777777777888888888763
No 66
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=81.76 E-value=11 Score=33.61 Aligned_cols=71 Identities=17% Similarity=0.045 Sum_probs=49.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHh
Q 038404 185 VIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEEL 264 (287)
Q Consensus 185 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L 264 (287)
+...|.+++..-.+...-..+=.++=|.||+.| .+|+|.|++|+-..++...|--...-+...|.+.+
T Consensus 51 ~~~~~~~~~~~~~~A~avEliH~asLihDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 118 (330)
T 1wmw_A 51 ALAHGAPLEAGLEAATALELFQNWVLVHDDIED------------GSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLL 118 (330)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHccccc------------CCCCCCCCCccccccCchHHHHHHHHHHHHHHHHH
Confidence 333444555445566666777788999999987 56788999999888877766666666666666666
Q ss_pred hcc
Q 038404 265 AYF 267 (287)
Q Consensus 265 ~~l 267 (287)
..+
T Consensus 119 ~~~ 121 (330)
T 1wmw_A 119 AEG 121 (330)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 67
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=81.28 E-value=6.4 Score=35.08 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=51.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 038404 184 GVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEE 263 (287)
Q Consensus 184 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~ 263 (287)
++.+.|.+.+..-.+...-..+=.+.-|.||+.| .+|++.|++|+-..++...|--...-+...|.+.
T Consensus 55 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~ 122 (325)
T 3aqb_B 55 SGFLNDTQKDDLIRTAVSLELVHMASLVHDDYID------------NSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQN 122 (325)
T ss_dssp HHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCCCcccccChHHHHHHHHHHHHHHHHH
Confidence 3334343434344555666667778899999987 5678899999999888887777777777777777
Q ss_pred hhcc
Q 038404 264 LAYF 267 (287)
Q Consensus 264 L~~l 267 (287)
+...
T Consensus 123 l~~~ 126 (325)
T 3aqb_B 123 IATI 126 (325)
T ss_dssp TTTC
T ss_pred HHhC
Confidence 7765
No 68
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=81.13 E-value=3.9 Score=36.31 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=51.2
Q ss_pred HHHHhCC-CchhHhHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCcCccchhhhcChhHHHHHhHHHHHHH
Q 038404 47 SCELVGG-DESSAMPVACALEMIHTMSLVHDDLPCMD------------NDDFRRGKPTNHKVFGEDTAILAGDALLSLA 113 (287)
Q Consensus 47 ~~~~~~~-~~~~~~~~A~avEliH~asLihDDI~~~D------------~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a 113 (287)
++.+.|. +++....+...-+.+=.+.-|.||+ +| .++.|.||+|+-..+|...|--...-+...|
T Consensus 193 ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDi--lD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 270 (304)
T 3lsn_A 193 GALASGRAEKGELKALQTYAQAIGLAFQVQDDI--LDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQA 270 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444 4555556677777888899999999 77 6789999999999999999988888889999
Q ss_pred HHHHHccc
Q 038404 114 FEHVAAKS 121 (287)
Q Consensus 114 ~~~l~~~~ 121 (287)
.+.|..++
T Consensus 271 ~~~L~~l~ 278 (304)
T 3lsn_A 271 LHALRPFD 278 (304)
T ss_dssp HHHTTTSC
T ss_pred HHHHHhCc
Confidence 99988763
No 69
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=80.52 E-value=6 Score=35.22 Aligned_cols=66 Identities=15% Similarity=0.113 Sum_probs=48.5
Q ss_pred CchhHhHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHccc
Q 038404 54 DESSAMPVACALEMIHTMSLVHDDLPCMD------------NDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKS 121 (287)
Q Consensus 54 ~~~~~~~~A~avEliH~asLihDDI~~~D------------~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~ 121 (287)
+++....+...-+.+=.+.-|.||+ +| .++.|.||+|+-..+|...|--...-+...|.+.|..+.
T Consensus 208 ~~~~~~~l~~~g~~lGlaFQI~DDi--lD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 285 (313)
T 3lom_A 208 SEQIKSALRTYGKHIGLVFQMQDDY--LDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFG 285 (313)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5555556667777888899999999 65 457899999999999999998888888889988887753
No 70
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=80.32 E-value=17 Score=31.98 Aligned_cols=71 Identities=21% Similarity=0.118 Sum_probs=51.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 038404 185 VIIGGGNMIEVERVRKYARCIGLLFQVVDDI--LDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATE 262 (287)
Q Consensus 185 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~ 262 (287)
+.+.|.+++....+...-+.+=.+.=|.||+ .| .+|+|.|++|+-..++...|--.-.-+...|.+
T Consensus 56 ~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D------------~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~ 123 (299)
T 1rqj_A 56 GHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD------------DDDLRRGLPTCHVKFGEANAILAGDALQTLAFS 123 (299)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCCEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhc------------CCCCCCCCCChhhhcChHHHHHHHHHHHHHHHH
Confidence 3444555554445566666677788899999 88 567889999999999887776666667777777
Q ss_pred Hhhcc
Q 038404 263 ELAYF 267 (287)
Q Consensus 263 ~L~~l 267 (287)
.+...
T Consensus 124 ~l~~~ 128 (299)
T 1rqj_A 124 ILSDA 128 (299)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 77663
No 71
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=80.11 E-value=9.2 Score=33.70 Aligned_cols=63 Identities=17% Similarity=0.106 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 038404 193 IEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYF 267 (287)
Q Consensus 193 ~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l 267 (287)
+....+...-..+=.+.=|.||+.| .+|++.|++|+-..++...|--.-.-+...|.+.+..+
T Consensus 61 ~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 123 (299)
T 1v4e_A 61 EDAISSLAALELVHLASLLHDDVID------------GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEI 123 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCCC------------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334455566667778889999987 56788999999988887766655566666666666654
No 72
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=80.05 E-value=4.2 Score=36.05 Aligned_cols=72 Identities=18% Similarity=0.026 Sum_probs=49.2
Q ss_pred HHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCcCccchhhhcChhHHHHHhHHHHHHHH
Q 038404 47 SCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMD------------NDDFRRGKPTNHKVFGEDTAILAGDALLSLAF 114 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D------------~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~ 114 (287)
++.+.|.+++....+...-+.+=.+.-|.||+ +| .++.+.||+|+-..+|...|--...-+...|.
T Consensus 197 ga~laga~~~~~~~l~~~g~~lGlaFQI~DDi--lD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~ 274 (302)
T 3p8l_A 197 GGVLANQTEEVIGLLTQFAHHYGLAFQIRDDL--LDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGS 274 (302)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555555566667777888899999999 55 46788999999999999888877788888888
Q ss_pred HHHHcc
Q 038404 115 EHVAAK 120 (287)
Q Consensus 115 ~~l~~~ 120 (287)
+.|..+
T Consensus 275 ~~L~~~ 280 (302)
T 3p8l_A 275 AVLEKI 280 (302)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888876
No 73
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=79.40 E-value=2.5 Score=37.34 Aligned_cols=62 Identities=15% Similarity=0.063 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 038404 193 IEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 193 ~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
+....+...-.-+=.+.-|.||+.| .+|+|.|++|+-..++...|--.-.-+..+|.+.+..
T Consensus 62 ~~~~~~A~avEliH~asLIHDDi~D------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~ 123 (295)
T 3ipi_A 62 SRSLNAALAVEMMHSASLIHDDLLD------------QGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISP 123 (295)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHH------------HHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCcC------------CCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 3344555666777888999999977 4567777777765555444443334444444444443
No 74
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=79.36 E-value=8.5 Score=34.18 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 038404 193 IEVERVRKYARCIGLLFQVVDDI--LDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 193 ~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
+....+...-..+=.++-|.||+ +| .+|+|.|++|+-..++-..|--.-.-+...|.+.|..
T Consensus 74 ~~~~~~A~aiEliH~aSLIHDDIp~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~ 137 (311)
T 3llw_A 74 TEYFKIALSIECLHTYSLIHDDLPCMD------------NAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSN 137 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccC------------CCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555556677788999999 77 5678899999998887776665556666677777765
No 75
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=79.35 E-value=7.4 Score=34.80 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=50.5
Q ss_pred HHHHhCCCchhHhHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCcCccchhhhcChhHHHHHhHHHHHHHH
Q 038404 47 SCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMD------------NDDFRRGKPTNHKVFGEDTAILAGDALLSLAF 114 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~A~avEliH~asLihDDI~~~D------------~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~ 114 (287)
++.+.|.+++....+..--+.+=.|.-|.||+ +| .++.|.||+|+-..+|...|--...-+..+|.
T Consensus 222 Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDi--LD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~ 299 (324)
T 3uca_A 222 GAVLAEASEGDIKKLEGFGYKLGLAFQIKDDI--LDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECI 299 (324)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556555556666777888899999999 65 45788999999999999999888888899999
Q ss_pred HHHHccc
Q 038404 115 EHVAAKS 121 (287)
Q Consensus 115 ~~l~~~~ 121 (287)
+.|..++
T Consensus 300 ~~L~~l~ 306 (324)
T 3uca_A 300 EILSSIK 306 (324)
T ss_dssp HHHHTSS
T ss_pred HHHHhCC
Confidence 9998864
No 76
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=79.22 E-value=6.4 Score=35.68 Aligned_cols=62 Identities=18% Similarity=0.051 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 038404 192 MIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELA 265 (287)
Q Consensus 192 ~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~ 265 (287)
.+....+...-..+=.++-|.||+.| .+|++.|++|+-..++...|--...-+...|.+.+.
T Consensus 64 ~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~ 125 (358)
T 4dhd_A 64 WRPALPAAAIVELIHNYSLIYDDIID------------RGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVL 125 (358)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccc------------CCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 33344555666777888999999977 567889999999999888777777777778877774
No 77
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=78.11 E-value=32 Score=29.47 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=57.5
Q ss_pred CCHHHHHHHHhcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcC--C
Q 038404 160 VSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSD--K 237 (287)
Q Consensus 160 ~~~~~~~~i~~~KTg~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~g--k 237 (287)
++.++|..+.+.-+|..+.++...-+.=...+++..+.+.++-...+...-+.||+..|..+.+. |+. +. .+| .
T Consensus 152 Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~-g~~-~h--~~~~~~ 227 (300)
T 1di1_A 152 HELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEEEA-SRT-GH--KEGAFL 227 (300)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCC--------------C
T ss_pred CCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hcc-cc--cccccc
Confidence 78999988754444443332222111112246677677888999999999999999998654321 210 00 001 2
Q ss_pred CcHHHHH------hHHHHHHHHHHHHHHHHHHhh
Q 038404 238 ATYPKLM------GIENARKFACDLLAQATEELA 265 (287)
Q Consensus 238 ~T~p~~~------~l~~a~~~~~~~~~~A~~~L~ 265 (287)
.+...++ ..+.|.+.+.+.++++.+.+.
T Consensus 228 ~n~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~ 261 (300)
T 1di1_A 228 CSAVKVLAEESKLGIPATKRVLWSMTREWETVHD 261 (300)
T ss_dssp CCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2444444 356666666666665554443
No 78
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=77.79 E-value=15 Score=32.47 Aligned_cols=60 Identities=20% Similarity=0.068 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh--hccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 038404 196 ERVRKYARCIGLLFQVVDDI--LDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYF 267 (287)
Q Consensus 196 ~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l 267 (287)
..+...-..+=.+.-|.||+ .| .+|+|.|++|+-..++...|--...-+...|.+.|...
T Consensus 73 ~~~A~aiEliH~aSLIHDDiP~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~ 134 (309)
T 3pde_A 73 WRPVMALELLHTYSLIHDDLPAMD------------NDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTAT 134 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 44555667777889999999 88 56889999999999998887777777788888888765
No 79
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=76.78 E-value=11 Score=33.65 Aligned_cols=67 Identities=24% Similarity=0.095 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhh--hccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 038404 189 GGNMIEVERVRKYARCIGLLFQVVDDI--LDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 189 ~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
|.+.+....+...-+.+=.+.-|.||+ +| .+|+|.|++|+-..++...|--.-.-+...|.+.|..
T Consensus 66 g~~~~~~~~~A~avEliH~aSLIHDDip~mD------------~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~ 133 (324)
T 3ts7_A 66 GVAADLLDGPACAVEFIHVYSLIHDDLPAMD------------DDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQ 133 (324)
T ss_dssp TCCGGGTHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCccccc------------CCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHh
Confidence 444444455666667778889999999 77 5688999999999998877777777777888888876
Q ss_pred c
Q 038404 267 F 267 (287)
Q Consensus 267 l 267 (287)
.
T Consensus 134 ~ 134 (324)
T 3ts7_A 134 D 134 (324)
T ss_dssp C
T ss_pred c
Confidence 5
No 80
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=76.45 E-value=17 Score=32.63 Aligned_cols=71 Identities=24% Similarity=0.206 Sum_probs=52.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 038404 185 VIIGGGNMIEVERVRKYARCIGLLFQVVDDI--LDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATE 262 (287)
Q Consensus 185 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~ 262 (287)
+...|.+++..-.+...-+.+=.+.-|.||+ +| .+|++.|++|+-..++...|--.-.-++..|.+
T Consensus 97 ~~~~g~~~~~~~~~A~aiEliH~asLIHDDiPamD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~ 164 (335)
T 2h8o_A 97 VALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMD------------DDDLRRGQPTVHRKFDEATAILAGDSLLTLAFD 164 (335)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc------------CCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHH
Confidence 3344555554445566666777788899999 88 567889999999998887777666677777888
Q ss_pred Hhhcc
Q 038404 263 ELAYF 267 (287)
Q Consensus 263 ~L~~l 267 (287)
.|...
T Consensus 165 ~l~~~ 169 (335)
T 2h8o_A 165 IIASD 169 (335)
T ss_dssp HHHST
T ss_pred HHHHh
Confidence 77765
No 81
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=76.18 E-value=23 Score=30.94 Aligned_cols=69 Identities=28% Similarity=0.219 Sum_probs=47.4
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHh
Q 038404 187 IGGGNMIEVERVRKYARCIGLLFQVVDDI--LDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEEL 264 (287)
Q Consensus 187 la~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L 264 (287)
+.|.+++..-.+...-+.+=.+.-|.||+ .| .+|+|.|++|+-..++...|--.-.-+...|.+.+
T Consensus 66 ~~g~~~~~~~~~A~avEliH~asLiHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l 133 (293)
T 2j1p_A 66 LVGGEESLAMPAACAVEMIHTMSLIHDDLPCMD------------NDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHL 133 (293)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 33445554444555666667788899998 77 56788999999988877766655555666666666
Q ss_pred hcc
Q 038404 265 AYF 267 (287)
Q Consensus 265 ~~l 267 (287)
...
T Consensus 134 ~~~ 136 (293)
T 2j1p_A 134 ASA 136 (293)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 82
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=75.65 E-value=5.3 Score=36.04 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=39.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 038404 184 GVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEE 263 (287)
Q Consensus 184 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~ 263 (287)
++.+.|.+.+....+...-..+=.+.-|.||+.| .+|++.|++|+-..++...|--.-.-+...|.+.
T Consensus 76 ~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~ 143 (345)
T 3oyr_A 76 AARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD------------GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFEL 143 (345)
T ss_dssp HHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC---------------------CCCSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC------------CCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 3444444444444566667778889999999977 4567778888766666555554445555566655
Q ss_pred hhcc
Q 038404 264 LAYF 267 (287)
Q Consensus 264 L~~l 267 (287)
+..+
T Consensus 144 l~~~ 147 (345)
T 3oyr_A 144 MVET 147 (345)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 5554
No 83
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=73.75 E-value=6.1 Score=34.95 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=48.1
Q ss_pred CchhHhHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHccc
Q 038404 54 DESSAMPVACALEMIHTMSLVHDDLPCMD------------NDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKS 121 (287)
Q Consensus 54 ~~~~~~~~A~avEliH~asLihDDI~~~D------------~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~ 121 (287)
+++....+...-+.+=.+.-|.||+ +| .++.+.||+|+-..+|...|--...-+..+|.+.|..+.
T Consensus 207 ~~~~~~~l~~~g~~lG~aFQI~DDi--lD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 284 (302)
T 3p8r_A 207 GRAMLPHLDRYAEAVGLAFQVQDDI--LDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIP 284 (302)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHH--HHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444455666677788889999999 65 457789999999999999998888888999999998764
No 84
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=73.11 E-value=27 Score=30.58 Aligned_cols=64 Identities=19% Similarity=0.058 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 038404 192 MIEVERVRKYARCIGLLFQVVDDI--LDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYF 267 (287)
Q Consensus 192 ~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l 267 (287)
.+....+...-+.+=.++-|.||+ +| .+|+|.|++|+-..++...|--.-.-+...|.+.|...
T Consensus 59 ~~~~~~~A~aiEliH~aSLIHDDIp~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~ 124 (291)
T 3npk_A 59 LNQALDVALALEFIHTYSLIHDDLPAMD------------NADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHA 124 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445666667778889999999 77 56788999999998887777666666777777777654
No 85
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=72.77 E-value=7.9 Score=35.19 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 038404 201 YARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYF 267 (287)
Q Consensus 201 ~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l 267 (287)
.-+-+=.++=|.||+.| .+|+|.|++|+-..++...|--...-+...|.+.+..+
T Consensus 103 aiEliH~asLiHDDimD------------~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~ 157 (368)
T 2q58_A 103 VVEAIQALILIADDIMD------------SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFEL 157 (368)
T ss_dssp HHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhccc------------CCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 33555667788999987 67899999999988877766555555555666555443
No 86
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=71.04 E-value=45 Score=32.02 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=66.5
Q ss_pred hhhhhhhhhhhhhcCC--CCCHHHHHHHHhcchHHHH-HHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhh
Q 038404 143 EGLVAGEIMDIDSEGK--DVSLNELENIHLHKTAKLL-EAAVVCGVIIGG-GNMIEVERV---RKYARCIGLLFQVVDDI 215 (287)
Q Consensus 143 ~~~~~GQ~~d~~~~~~--~~~~~~~~~i~~~KTg~l~-~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG~afQi~DD~ 215 (287)
..++.+-..+..|... -+|.++|.....--+|..+ ...+.+| ++. .+.+..+.+ .++-+..+...-+.||+
T Consensus 376 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~--mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI 453 (554)
T 3g4d_A 376 IRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVG--MGDIVTPETFKWAASDPKIIQASTIICRFMDDV 453 (554)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHT--SCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHh--cCCCCCHHHHHhccccHHHHHHHHHHHHHhccc
Confidence 4456666666666432 3899999887543333322 2222221 122 355555443 36788899999999999
Q ss_pred hccccchhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHhhc
Q 038404 216 LDVTKSSKELGKTAGKDLVSDKA-TYPKLM------GIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 216 ld~~~~~~~~GK~~~~Dl~~gk~-T~p~~~------~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
..+..+.+ +|.. +...++ ..|.|.+.++..++.+.+.|+.
T Consensus 454 ~S~k~E~~-----------rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~ 500 (554)
T 3g4d_A 454 AEHKFKHR-----------REDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQ 500 (554)
T ss_dssp HHHCC-----------------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhc-----------cCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 98864322 2332 444333 4678888899999999887764
No 87
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=70.43 E-value=16 Score=33.94 Aligned_cols=77 Identities=12% Similarity=0.004 Sum_probs=44.9
Q ss_pred hhhhhhhhhhhhhcC--CCCCHHHHHHHHhcchHHHHHHHHHHHHHhc-CCCHHHHH--HHHHHHHHHHHHHHHHHhhhc
Q 038404 143 EGLVAGEIMDIDSEG--KDVSLNELENIHLHKTAKLLEAAVVCGVIIG-GGNMIEVE--RVRKYARCIGLLFQVVDDILD 217 (287)
Q Consensus 143 ~~~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~l~~~~~~~ga~la-~~~~~~~~--~l~~~g~~lG~afQi~DD~ld 217 (287)
...+.+-..+..|.. ..++.++|..+. ..||....+++ +....+ ...++..+ .+.++-...+...-+.||+..
T Consensus 265 ~~~~~a~l~EA~W~~~g~vPsleEYl~~R-~~sg~~p~~~l-~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~S 342 (433)
T 3v1v_A 265 ARLHLGYLAEGAWAQTGHVPEVWEYLAMR-QFNNFRPCPTI-TDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYS 342 (433)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHH-HHSSSTTTGGG-HHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHhHHHHHHH-HHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHH
Confidence 345555555555532 237899998874 56654321111 111122 13444432 566778888888999999999
Q ss_pred cccc
Q 038404 218 VTKS 221 (287)
Q Consensus 218 ~~~~ 221 (287)
|..+
T Consensus 343 y~kE 346 (433)
T 3v1v_A 343 YTKE 346 (433)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8643
No 88
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=69.92 E-value=55 Score=31.37 Aligned_cols=111 Identities=8% Similarity=0.028 Sum_probs=66.7
Q ss_pred hhhhhhhhhhhhhcC--CCCCHHHHHHHHhcchHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhh
Q 038404 143 EGLVAGEIMDIDSEG--KDVSLNELENIHLHKTAKL-LEAAVVCGVIIGG-GNMIEVERV---RKYARCIGLLFQVVDDI 215 (287)
Q Consensus 143 ~~~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~l-~~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG~afQi~DD~ 215 (287)
..++.+-..+..|.. .-+|.++|.....--+|.. +...+.+++ +. .+++..+.+ .++-+..+...-+.||+
T Consensus 374 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi 451 (555)
T 3n0f_A 374 ADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAV--VQNIKKEEIENLQKYHDIISRPSHIFRLCNDL 451 (555)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHH--CSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhc--CCCCCHHHHHhcccchHHHHHHHHHHHHhccc
Confidence 345556566666643 2389999888753333332 222222221 32 455554433 46778888889999999
Q ss_pred hccccchhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHhhc
Q 038404 216 LDVTKSSKELGKTAGKDLVSDKA-TYPKLM------GIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 216 ld~~~~~~~~GK~~~~Dl~~gk~-T~p~~~------~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
..+..+. .+|.. +...++ ..|.|.+.++..++.+.+.|+.
T Consensus 452 ~S~~~E~-----------~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~ 498 (555)
T 3n0f_A 452 ASASAEI-----------ARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNK 498 (555)
T ss_dssp HHHHHHH-----------TTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhh-----------hcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8875432 22333 444433 4678888899999999887764
No 89
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=69.27 E-value=11 Score=32.79 Aligned_cols=72 Identities=11% Similarity=-0.041 Sum_probs=47.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHh
Q 038404 185 VIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEEL 264 (287)
Q Consensus 185 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L 264 (287)
+.+.|.+.+....+...-..+=.+.-|.||+..- .+|.+.|++|+-..++...|--.-.-+...|.+.|
T Consensus 52 ~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~~d-----------D~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l 120 (274)
T 3kra_B 52 CELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLT-----------DGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELL 120 (274)
T ss_dssp HHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCCCS-----------SSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHcCCccc-----------CCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666677788899999999721 22446777787777776666655666677777777
Q ss_pred hcc
Q 038404 265 AYF 267 (287)
Q Consensus 265 ~~l 267 (287)
...
T Consensus 121 ~~~ 123 (274)
T 3kra_B 121 AGS 123 (274)
T ss_dssp HHT
T ss_pred Hhc
Confidence 665
No 90
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=68.14 E-value=31 Score=31.39 Aligned_cols=64 Identities=19% Similarity=0.093 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHH----------------hHHHHHHHHHH
Q 038404 192 MIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLM----------------GIENARKFACD 255 (287)
Q Consensus 192 ~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~----------------~l~~a~~~~~~ 255 (287)
.+..-.+...-..+=.+.=|.||+.| .+|++.|++|+-..+ +...|--.-.-
T Consensus 87 ~~~~~~~AaaiEliH~asLIHDDImD------------~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~ 154 (380)
T 3lk5_A 87 LESVLDAAASLEFIQACALIHDDIID------------SSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDM 154 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT------------C-----------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcC------------CCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHH
Confidence 44444555666677778899999987 567888999988764 55555555555
Q ss_pred HHHHHHHHhhcc
Q 038404 256 LLAQATEELAYF 267 (287)
Q Consensus 256 ~~~~A~~~L~~l 267 (287)
++..|.+.+...
T Consensus 155 Ll~~A~~~l~~~ 166 (380)
T 3lk5_A 155 ALVWAEDMLQDS 166 (380)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHc
Confidence 566676666654
No 91
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=67.13 E-value=17 Score=32.17 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 038404 197 RVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYFE 268 (287)
Q Consensus 197 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l~ 268 (287)
.+...-..+=.++-|.||+.| .+|+|.|++|+-..++...|--...-+...|.+.+..++
T Consensus 61 ~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 120 (315)
T 3tc1_A 61 NLCTIVEMIQTASLLHDDVID------------KATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG 120 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----------------------------CCSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcCCCC------------CCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc
Confidence 445555667778899999977 457788888888777666555555556666666666554
No 92
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=66.81 E-value=63 Score=27.91 Aligned_cols=61 Identities=23% Similarity=0.157 Sum_probs=41.5
Q ss_pred CCHHHHHHHHhcchHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 038404 160 VSLNELENIHLHKTAKLLEAA-VVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKS 221 (287)
Q Consensus 160 ~~~~~~~~i~~~KTg~l~~~~-~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~ 221 (287)
++.++|..+.+.-+|..+.++ +.++ .=-..+++..+.+.++-...+...-+.||+..|..+
T Consensus 166 Ps~eeYl~~r~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE 227 (320)
T 3bny_A 166 MGLGGYLEYRERDVGKELLAALMRFS-MGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKE 227 (320)
T ss_dssp CCHHHHHHHHHTCHHHHHHHHHHHHH-HTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhhcccHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 789999988655555443322 2222 112246677677888999999999999999998643
No 93
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=62.90 E-value=1.1e+02 Score=29.29 Aligned_cols=111 Identities=14% Similarity=0.033 Sum_probs=67.0
Q ss_pred hhhhhhhhhhhhhcC--CCCCHHHHHHHHhcchHHHHHH-HHHHHHHhcCCCHHHHHH---HHHHHHHHHHHHHHHHhhh
Q 038404 143 EGLVAGEIMDIDSEG--KDVSLNELENIHLHKTAKLLEA-AVVCGVIIGGGNMIEVER---VRKYARCIGLLFQVVDDIL 216 (287)
Q Consensus 143 ~~~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~l~~~-~~~~ga~la~~~~~~~~~---l~~~g~~lG~afQi~DD~l 216 (287)
..++.+-..+..|.. .-+|.++|.....--+|..+-. .+.+|. -..+.+..+- ..++-+..+...-+.||+.
T Consensus 372 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~--~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~ 449 (550)
T 3m00_A 372 KEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM--KSATEQDFEWLSKNPKILEASVIICRVIDDTA 449 (550)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC--TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC--CCCcHHHHHhhcccHHHHHHHhhhheeeccch
Confidence 345566666666643 3389999988753333332211 112221 1245554443 2467788899999999998
Q ss_pred ccccchhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHhhc
Q 038404 217 DVTKSSKELGKTAGKDLVSDKA-TYPKLM------GIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 217 d~~~~~~~~GK~~~~Dl~~gk~-T~p~~~------~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
.+..+. .+|.. +....+ ..|.|.+.++..++.+.+.|+.
T Consensus 450 S~k~E~-----------~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~ 495 (550)
T 3m00_A 450 TYEVEK-----------SRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINE 495 (550)
T ss_dssp SHHHHH-----------HTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-----------hcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 875432 23333 444333 4678888899999999887763
No 94
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=61.17 E-value=37 Score=30.33 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 038404 198 VRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEELAYF 267 (287)
Q Consensus 198 l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L~~l 267 (287)
+...-..+=.++-|.||++| .+|++.|++|+-..++...|--.-.-+...|...+..+
T Consensus 92 ~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 149 (348)
T 3apz_A 92 IAEITEMIHVASLLHDDVLD------------DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAAL 149 (348)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccC------------CCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhC
Confidence 34444555667789999977 56788899888888777666555555666666666554
No 95
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=57.03 E-value=23 Score=32.12 Aligned_cols=62 Identities=19% Similarity=0.112 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHH---HHHHHHhhc
Q 038404 193 IEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLL---AQATEELAY 266 (287)
Q Consensus 193 ~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~---~~A~~~L~~ 266 (287)
+....+...-+-+=.++=|.||+.| .+|+|.|++|+-..++...|--...-+. ..|...|..
T Consensus 95 ~~~~~~A~avEllH~asLIHDDImD------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~ 159 (368)
T 2her_A 95 DSIYLLGWVVEAIQALILIADDIMD------------SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSS 159 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc------------CCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556667788999999987 5678899999988887665555444444 444444443
No 96
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=56.85 E-value=28 Score=30.04 Aligned_cols=70 Identities=7% Similarity=-0.025 Sum_probs=40.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHh
Q 038404 185 VIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFACDLLAQATEEL 264 (287)
Q Consensus 185 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a~~~~~~~~~~A~~~L 264 (287)
+.+.|.+.+....+...-..+=.+.-|.||+.|- |. +.|++|+-..++...|--.-.-+...|.+.|
T Consensus 57 ~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~D~--d~-----------RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l 123 (273)
T 3qkc_B 57 CELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLT--DG-----------PMSKSEIQHKFDPNIELLTGDGIIPFGLELM 123 (273)
T ss_dssp HHHTTCCGGGTHHHHHHHHHHHHHHHHHHSCCBT--TB-----------CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHcCcccC--cc-----------CCCCCCchhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3344545555556666777788899999999874 11 3445555444444444433444445555555
Q ss_pred hcc
Q 038404 265 AYF 267 (287)
Q Consensus 265 ~~l 267 (287)
...
T Consensus 124 ~~~ 126 (273)
T 3qkc_B 124 ARS 126 (273)
T ss_dssp HHH
T ss_pred HHc
Confidence 443
No 97
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=54.60 E-value=41 Score=30.76 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHH--HHHHHHHHHHHHHHHhhc
Q 038404 200 KYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIEN--ARKFACDLLAQATEELAY 266 (287)
Q Consensus 200 ~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~--a~~~~~~~~~~A~~~L~~ 266 (287)
..-.-+=.++=|.||+.| .+|+|.|++|+-..++... |--...-+...|...|..
T Consensus 112 ~aiEliH~asLIHDDImD------------~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~ 168 (395)
T 2ihi_A 112 WCIEILQAAFLVADDIMD------------KGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEI 168 (395)
T ss_dssp HHHHHHHHHHHHHHHHHT------------TCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccc------------CCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 344556678899999977 5677888888865554443 222222233445555544
No 98
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=46.54 E-value=2e+02 Score=27.32 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=63.2
Q ss_pred hhhhhhhhhhhhcCC--CCCHHHHHHHHhcchHHH-HHHHHHHHHHhcC-CCHHHHHH---HHHHHHHHHHHHHHHHhhh
Q 038404 144 GLVAGEIMDIDSEGK--DVSLNELENIHLHKTAKL-LEAAVVCGVIIGG-GNMIEVER---VRKYARCIGLLFQVVDDIL 216 (287)
Q Consensus 144 ~~~~GQ~~d~~~~~~--~~~~~~~~~i~~~KTg~l-~~~~~~~ga~la~-~~~~~~~~---l~~~g~~lG~afQi~DD~l 216 (287)
.++.+-..+..|... .+|.++|......=+|.. +......+ ++. .+++..+- ..++-+..+...-+.||+.
T Consensus 366 ~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~--~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~ 443 (543)
T 2ong_A 366 DLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFR--VTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLG 443 (543)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHH--HSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHH--cCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccc
Confidence 344455555555432 378999887653222322 22222222 232 34544333 2356777788888999998
Q ss_pred ccccchhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHhhc
Q 038404 217 DVTKSSKELGKTAGKDLVSDKA-TYPKLM------GIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 217 d~~~~~~~~GK~~~~Dl~~gk~-T~p~~~------~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
.+..+. ..|.. +...++ ..+.|.+.+...++.+.+.+..
T Consensus 444 S~~~E~-----------~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~ 489 (543)
T 2ong_A 444 TSVEEV-----------SRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNA 489 (543)
T ss_dssp SSHHHH-----------HTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcc-----------ccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 875432 23333 444443 4678888888888888888876
No 99
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=45.04 E-value=65 Score=30.77 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=58.1
Q ss_pred hhhhhhhhhhhhcC--CCCCHHHHHHHHhcchHHH--HHHHHHHHHHhcC-CCHHH-HHH---HHHHHHHHHHHHHHHHh
Q 038404 144 GLVAGEIMDIDSEG--KDVSLNELENIHLHKTAKL--LEAAVVCGVIIGG-GNMIE-VER---VRKYARCIGLLFQVVDD 214 (287)
Q Consensus 144 ~~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~l--~~~~~~~ga~la~-~~~~~-~~~---l~~~g~~lG~afQi~DD 214 (287)
.++.+-..+..|.. ..+|.++|.... .-|+.. +......| ++. .+++. .+. ..++-+..+...-+.||
T Consensus 372 ~l~~ayl~EAkW~~~g~vPt~eEYl~~~-~vS~g~~~l~~~~~~~--~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~ND 448 (549)
T 1n1b_A 372 DLVEAYFHEAKWYHSGYTPSLDEYLNIA-KISVASPAIISPTYFT--FANASHDTAVIDSLYQYHDILCLAGIILRLPDD 448 (549)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHH-HHHTCHHHHHHHHHTT--STTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHhc-ccchhHHHHHHHHHHH--cCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcc
Confidence 34444444555432 237899988765 334322 11111111 122 23343 322 34577788888999999
Q ss_pred hhccccchhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHhhc
Q 038404 215 ILDVTKSSKELGKTAGKDLVSDKA-TYPKLM------GIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 215 ~ld~~~~~~~~GK~~~~Dl~~gk~-T~p~~~------~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
+..+..+. ..|.. +...++ ..+.|.+.+++.++++.+.+..
T Consensus 449 i~S~~~E~-----------~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~ 496 (549)
T 1n1b_A 449 LGTSYFEL-----------ARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNT 496 (549)
T ss_dssp HC--------------------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhh-----------ccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 98875432 23333 444443 4678888888889998886664
No 100
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=38.52 E-value=75 Score=28.66 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHh
Q 038404 200 KYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMG 245 (287)
Q Consensus 200 ~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~ 245 (287)
..-..+=.++=|.||++| .+|+|.|++|+-..++
T Consensus 111 ~avEliH~asLIHDDImD------------~s~~RRG~pt~h~~~G 144 (374)
T 2qis_A 111 WCVELLQAFFLVADDIMD------------SSLTRRGQICWYQKPG 144 (374)
T ss_dssp HHHHHHHHHHHHHHHHHT------------TCCEETTEECGGGSTT
T ss_pred HHHHHHHHHHHHHccccC------------CCCCCCCCccHHHhcC
Confidence 444556667889999977 3455666666655443
No 101
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=34.82 E-value=1.1e+02 Score=27.38 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhH--HHHHHHHHHHHHHHHHHhhcc
Q 038404 200 KYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGI--ENARKFACDLLAQATEELAYF 267 (287)
Q Consensus 200 ~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l--~~a~~~~~~~~~~A~~~L~~l 267 (287)
..-..+=.++=|.||+.| .+|+|.|++|+-..++. ..|--...-+...|.+.+..+
T Consensus 85 ~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~ 142 (362)
T 1yhl_A 85 WMIEFLQAHYLVEDDIMD------------GSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHY 142 (362)
T ss_dssp HHHHHHHHHHHHHHHHHH------------TCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccC------------CCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHh
Confidence 345556667789999987 45677888888777665 234444444556666666554
No 102
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=34.57 E-value=2.6e+02 Score=26.75 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=53.8
Q ss_pred hhhhhhhhhhhhcC--CCCCHHHHHHHHhcchHHH--HHHHHHHHHHhcC-CCHHHHHH---HHHHHHHHHHHHHHHHhh
Q 038404 144 GLVAGEIMDIDSEG--KDVSLNELENIHLHKTAKL--LEAAVVCGVIIGG-GNMIEVER---VRKYARCIGLLFQVVDDI 215 (287)
Q Consensus 144 ~~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~l--~~~~~~~ga~la~-~~~~~~~~---l~~~g~~lG~afQi~DD~ 215 (287)
.++.+-..+..|.. ..+|.++|.... .-|+.. +......+ ++. .+++..+- ..++-+..+...-+.||+
T Consensus 393 ~l~~ayl~EAkW~~~g~vPt~eEYl~~~-~vSsg~~~l~~~~~~~--~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI 469 (569)
T 2j5c_A 393 GLIESYLIEAKWYYKGHKPSLEEYMKNS-WISIGGIPILSHLFFR--LTDSIEEEAAESMHKYHDIVRASCTILRLADDM 469 (569)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHH-HHHTSCHHHHHHHHHH--SCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhcc-cccchHHHHHHHHHHH--cCCCCCHHHHHHhhccHHHHHHHHHHHHHhccc
Confidence 34445455555532 237899888765 333322 21111111 222 34444333 235677777888899999
Q ss_pred hccccchhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHhh
Q 038404 216 LDVTKSSKELGKTAGKDLVSDKA-TYPKLM------GIENARKFACDLLAQATEELA 265 (287)
Q Consensus 216 ld~~~~~~~~GK~~~~Dl~~gk~-T~p~~~------~l~~a~~~~~~~~~~A~~~L~ 265 (287)
..+..+.+ .|.. +...++ ..+.|.+.+...++.+.+.|.
T Consensus 470 ~S~~~E~~-----------rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln 515 (569)
T 2j5c_A 470 GTSLDEVE-----------RGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMN 515 (569)
T ss_dssp HC---------------------CCHHHHC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhcc-----------cCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88864321 2222 233222 346677777777777776655
No 103
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=33.72 E-value=2.1e+02 Score=28.43 Aligned_cols=110 Identities=12% Similarity=0.049 Sum_probs=62.9
Q ss_pred hhhhhhhhhhhhcC--CCCCHHHHHHHHhcchHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 038404 144 GLVAGEIMDIDSEG--KDVSLNELENIHLHKTAKL-LEAAVVCGVIIGG-GNMIEVERV---RKYARCIGLLFQVVDDIL 216 (287)
Q Consensus 144 ~~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~l-~~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG~afQi~DD~l 216 (287)
.++.+-..+..|.. .-+|.++|.....--+|.- +...+..+ ++. .+++..+.. .++-+..+...-+.||+.
T Consensus 577 ~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~ 654 (764)
T 3p5p_A 577 LYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTK 654 (764)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhccc
Confidence 44555555555533 2389998887653223332 22222222 222 344444443 467788888999999998
Q ss_pred ccccchhhhCCccchhhhcCCC-cHHHHH-------hHHHHHHHHHHHHHHHHHHhhc
Q 038404 217 DVTKSSKELGKTAGKDLVSDKA-TYPKLM-------GIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 217 d~~~~~~~~GK~~~~Dl~~gk~-T~p~~~-------~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
.+..+. .+|.. +....+ ..|.|.+.++..++.+.+.|.+
T Consensus 655 S~k~E~-----------~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~ 701 (764)
T 3p5p_A 655 TYQAEK-----------ARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASF 701 (764)
T ss_dssp HHHHHH-----------TTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHH-----------hcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 885432 22332 333332 3567788888888888887764
No 104
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=32.67 E-value=55 Score=25.42 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCcCccchhhhcChhHHHHHhHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHh
Q 038404 66 EMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAV 140 (287)
Q Consensus 66 EliH~asLihDDI~~~D~s~~RRg~pt~h~~~G~~~Ail~gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (287)
=-|-++--+.||| +++. ....||+||++-+.-+.+|++... ...+..+++++
T Consensus 52 laIDTsmrv~d~i---~~n~-------------K~riVLaGD~~Sa~fY~lLa~~~~-------~~~i~~lS~aI 103 (147)
T 3aqb_A 52 VAIDTSMRMQDFI---NEDN-------------KDSFVLSTDVLSALFYKYLSQPFY-------QHDFLVLTDCV 103 (147)
T ss_dssp HHHHHHHHHGGGC---CTTT-------------HHHHHHHHHHHHHHHHHHTBTTBC-------HHHHHHHHHHH
T ss_pred eEeccHHHhhccc---ccCC-------------ccceEeehHHHHHHHHHHHcChhh-------HHHHHHHHHHH
Confidence 3456666777887 3221 112469999999999999996422 23445555555
No 105
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=32.04 E-value=2.4e+02 Score=28.23 Aligned_cols=110 Identities=14% Similarity=0.048 Sum_probs=61.2
Q ss_pred hhhhhhhhhhhhcC--CCCCHHHHHHHHhcchHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 038404 144 GLVAGEIMDIDSEG--KDVSLNELENIHLHKTAKL-LEAAVVCGVIIGG-GNMIEVERV---RKYARCIGLLFQVVDDIL 216 (287)
Q Consensus 144 ~~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~l-~~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG~afQi~DD~l 216 (287)
.++.+-..+..|.. .-+|.++|.....--+|.- +...+..+ ++. .+++..+.. .++-+..+...-+.||+.
T Consensus 608 ~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~ 685 (785)
T 3s9v_A 608 VQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALF--TGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTK 685 (785)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTC--SSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHH--cCCCCCHHHHhcccccHHHHHHHHHHHHHhcccc
Confidence 34555555555533 2388998887653222221 11211111 122 345544332 467778888889999998
Q ss_pred ccccchhhhCCccchhhhcCCC-cHHHHH-------hHHHHHHHHHHHHHHHHHHhhc
Q 038404 217 DVTKSSKELGKTAGKDLVSDKA-TYPKLM-------GIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 217 d~~~~~~~~GK~~~~Dl~~gk~-T~p~~~-------~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
.+..+. . +|.. +...++ ..|.|.+.++..++.+.+.|.+
T Consensus 686 S~k~E~-~----------rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~ 732 (785)
T 3s9v_A 686 TYQAER-G----------QGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNR 732 (785)
T ss_dssp HHHHHH-H----------HSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-h----------cCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 875432 2 2322 333332 3567777788888888877764
No 106
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=30.37 E-value=1.5e+02 Score=29.77 Aligned_cols=110 Identities=16% Similarity=0.092 Sum_probs=62.5
Q ss_pred hhhhhhhhhhhhhcC--CCCCHHHHHHHHhcchHHH---HHHHHHHHHHhcC-CCHHHHHHHH-----HHHHHHHHHHHH
Q 038404 143 EGLVAGEIMDIDSEG--KDVSLNELENIHLHKTAKL---LEAAVVCGVIIGG-GNMIEVERVR-----KYARCIGLLFQV 211 (287)
Q Consensus 143 ~~~~~GQ~~d~~~~~--~~~~~~~~~~i~~~KTg~l---~~~~~~~ga~la~-~~~~~~~~l~-----~~g~~lG~afQi 211 (287)
..++.+-..+..|.. .-+|.++|.... ..|..+ +..++..+ ++. .+++..+... ++-+..+...-+
T Consensus 635 ~~l~~ayl~EAkW~~~gyvPt~eEYl~na-~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL 711 (817)
T 3sdr_A 635 EDYLLGYYEEAEWLAAEYVPTLDEYIKNG-ITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTELNSLISRL 711 (817)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHH-HHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhc-cccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHHHHHHHHHH
Confidence 345555555555543 238899888765 333322 12222221 222 3555555443 677888888999
Q ss_pred HHhhhccccchhhhCCccchhhhcCCC-cHHHHH-------hHHHHHHHHHHHHHHHHHHhhc
Q 038404 212 VDDILDVTKSSKELGKTAGKDLVSDKA-TYPKLM-------GIENARKFACDLLAQATEELAY 266 (287)
Q Consensus 212 ~DD~ld~~~~~~~~GK~~~~Dl~~gk~-T~p~~~-------~l~~a~~~~~~~~~~A~~~L~~ 266 (287)
.||+..+..+.+ +|.. +....+ ..|.|.+.++..++.+.+.|.+
T Consensus 712 ~NDi~S~k~E~~-----------rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~ 763 (817)
T 3sdr_A 712 ADDTKTYKAEKA-----------RGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTR 763 (817)
T ss_dssp HHHHHSSCC-----------------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHh-----------cCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999998864322 2222 333332 3567788888888888887764
No 107
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=23.90 E-value=3.6e+02 Score=24.17 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=30.2
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhhccccchhhhCCccchhhhcCCCcHHHHHhHHHH
Q 038404 192 MIEVERVRKYA---RCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENA 249 (287)
Q Consensus 192 ~~~~~~l~~~g---~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T~p~~~~l~~a 249 (287)
.+..+.....+ +-+=.++=|.||++| .+|+|.|++|+-..++...|
T Consensus 101 ~~~~~~~~~~A~aiEliH~asLiHDDImD------------~s~~RRG~pt~h~~~g~~~A 149 (395)
T 3mav_A 101 SSEWEKAACLAWCIEILQAAFLVADDIMD------------KGEMRRNKYCWYLLKDVETK 149 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECGGGSTTTHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHhc------------CCCCCCCchhhhhccchHHH
Confidence 34444443443 444556778999987 56888999998777765543
No 108
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=22.52 E-value=54 Score=21.05 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=16.0
Q ss_pred CcCccchhhhcChhHHHHHhHHHHHHH
Q 038404 87 RRGKPTNHKVFGEDTAILAGDALLSLA 113 (287)
Q Consensus 87 RRg~pt~h~~~G~~~Ail~gd~L~~~a 113 (287)
+...|..|-+||+. ||+|-..|..+
T Consensus 3 ~k~~p~FHdKYGn~--~L~~Ga~FC~a 27 (56)
T 1v54_K 3 QKRAPDFHDKYGNA--VLASGATFCVA 27 (56)
T ss_dssp ---CCCHHHHHHHH--HHHHHHHHHHH
T ss_pred cccCcchhhhcCce--eeecchhhhHh
Confidence 34568899999984 66666655444
No 109
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=20.75 E-value=67 Score=28.94 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=35.9
Q ss_pred HHHHhC-CCchhHhHHHHHHHHHHHHHHHHhCCCCCC-----------CCCCCcCccchhhhcCh
Q 038404 47 SCELVG-GDESSAMPVACALEMIHTMSLVHDDLPCMD-----------NDDFRRGKPTNHKVFGE 99 (287)
Q Consensus 47 ~~~~~~-~~~~~~~~~A~avEliH~asLihDDI~~~D-----------~s~~RRg~pt~h~~~G~ 99 (287)
++.+.| .+++....+...-+.+=.+.=|.||+ +| +++.+.|++|+-..++.
T Consensus 227 ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~--LD~~gd~~~~GK~g~Dl~egK~T~p~l~al 289 (367)
T 1uby_A 227 AMYMVGIDSKEEHENAKAILLEMGEYFQIQDDY--LDCFGDPALTGAVGTDIQDNKCSWLVVQCL 289 (367)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCTTCSSCCCCCSSSCCCCHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCChhhcCCchhhHHcCCchHHHHHHH
Confidence 334445 46666666666777888899999999 66 25788899988766543
No 110
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=20.34 E-value=2.4e+02 Score=20.04 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhhcccc
Q 038404 192 MIEVERVRKYARCIGLLFQ-VVDDILDVTK 220 (287)
Q Consensus 192 ~~~~~~l~~~g~~lG~afQ-i~DD~ld~~~ 220 (287)
.+..++..-+|..+|-.|| |.|++-+|..
T Consensus 8 ~EL~~aA~V~gK~~G~SYq~iid~l~eyh~ 37 (90)
T 4err_A 8 QELKERAKVFAKPIGASYQGILDQLDLVHQ 37 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 3556778889999999996 7888888764
Done!