RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 038404
(287 letters)
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 194 bits (492), Expect = 3e-61
Identities = 121/291 (41%), Positives = 161/291 (55%), Gaps = 6/291 (2%)
Query: 1 MTSKAKRVNKALDETV--QLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSA 58
+ + K+ N+AL + + E M+Y L GGKR+RP L A+ + G ++
Sbjct: 7 LEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTL 66
Query: 59 MPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA 118
A A+E IH SL+HDDLP MD+DD RRG PT H FGE AILAGDAL +LAF ++
Sbjct: 67 DAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILS 126
Query: 119 -AKSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTA-KL 176
A E+S + I+EL SA G G+ G+ +D+D+EGK V L+ LE IH HKT +
Sbjct: 127 DADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALI 186
Query: 177 LEAAVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSD 236
A + + G + + KYA IGL FQV DDILDV + LGK G D
Sbjct: 187 RAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLG 246
Query: 237 KATYPKLMGIENARKFACDLLAQATEELAYF--EVARAAPLYHLAYYIASR 285
K+TYP L+G+E ARK A DL+ A + L + + L LA YI R
Sbjct: 247 KSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQR 297
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 172 bits (435), Expect = 7e-53
Identities = 113/287 (39%), Positives = 160/287 (55%), Gaps = 3/287 (1%)
Query: 1 MTSKAKRVNKALDETV-QLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAM 59
M VN L + + ++ E+M YSL AGGKR+RPVL + + + + + M
Sbjct: 5 MNKLIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGM 64
Query: 60 PVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAA 119
A ALEMIHT SL+HDDLP MDNDD+RRGK TNHKV+GE TAILAGDALL+ AFE + +
Sbjct: 65 KSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELI-S 123
Query: 120 KSTEISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEA 179
++ + ++ + L A G G+V G+++D+ SEG+ + L LE IH KT LL
Sbjct: 124 SDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTF 183
Query: 180 AVVCGVIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKAT 239
AV+ I + E + Y+ +G++FQ+ DD+LD +LGK G DL ++K+T
Sbjct: 184 AVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKST 243
Query: 240 YPKLMGIENARKFACDLLAQATEELAYF-EVARAAPLYHLAYYIASR 285
Y L+G + A A +EL E L + SR
Sbjct: 244 YVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSR 290
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 104 bits (260), Expect = 4e-27
Identities = 55/252 (21%), Positives = 93/252 (36%), Gaps = 15/252 (5%)
Query: 24 IHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPVACALEMIHTMSLVHDDLPCMDN 83
+ E +Y L GK+VR L A + E + EM+H SL+ DD+ DN
Sbjct: 7 LLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDI--EDN 64
Query: 84 DDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAIAELGSAVGSE 143
RRG P H ++G + I + + + L E V + R + E
Sbjct: 65 SKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLE-------L 117
Query: 144 GLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCGVIIGGGNMIEVERVRKYAR 203
G + + E + + L KT L V + E ++
Sbjct: 118 HQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFG----LAVGLMQLFSDYKEDLKPLLN 173
Query: 204 CIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMGIENARKFAC--DLLAQAT 261
+GL FQ+ DD ++ K+ +DL K ++P + I + + ++L Q T
Sbjct: 174 TLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRT 233
Query: 262 EELAYFEVARAA 273
E + +
Sbjct: 234 ENIDIKKYCVHY 245
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 101 bits (251), Expect = 6e-26
Identities = 61/263 (23%), Positives = 107/263 (40%), Gaps = 20/263 (7%)
Query: 6 KRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDES-SAMPVACA 64
++V + +++ + P E + L GK +R L I S + G + A+ A
Sbjct: 6 EKVKERIEQILSQFFP----EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAA 61
Query: 65 LEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEI 124
LE++H SL+HDD+ FRRGK T + ++G+ A+ AGD +L AF V
Sbjct: 62 LELVHLASLLHDDVIDGAR--FRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNK 119
Query: 125 SPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVVCG 184
+ I + + E+++ S K ++ E I K+ L A+
Sbjct: 120 LRRAFLNVIGK---------MSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 170
Query: 185 VIIGGGNMIEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLM 244
++ E + IG ++Q+ DDI+D K DL + A++P +
Sbjct: 171 ALLE---GELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDG-FLDLKNGVASFPLVT 226
Query: 245 GIENARKFACDLLAQATEELAYF 267
+E + + L F
Sbjct: 227 AMEKFPEARQMFENRDWSGLMSF 249
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 97.8 bits (242), Expect = 4e-24
Identities = 50/272 (18%), Positives = 88/272 (32%), Gaps = 22/272 (8%)
Query: 21 PAKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDES-------SAMPVACALEMIHTMSL 73
A++ E ++Y+ GGK R + +A+ + G A+ V +E+ L
Sbjct: 37 VARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAFFL 95
Query: 74 VHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVAAKSTEISPDRVVRAI 133
V DD+ MD RRG+ +K G + LL + V K V +
Sbjct: 96 VADDI--MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYC-RQRPYYVHLL 152
Query: 134 AELGSAVGSEGLVAGEIMDIDSEGKDVSLNE-------LENIHLHKTAKLLEAAVVCGVI 186
L +++D+ + + V +
Sbjct: 153 ELFLQTAYQTELG--QMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMY 210
Query: 187 IGGGNM-IEVERVRKYARCIGLLFQVVDDILDVTKSSKELGKTAGKDLVSDKATYPKLMG 245
+ G + E E + +G FQ+ DD LD GK +K ++ +
Sbjct: 211 MVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDI-QDNKCSWLVVQC 269
Query: 246 IENARKFACDLLAQATEELAYFEVARAAPLYH 277
++ LL +VA+ LY
Sbjct: 270 LQRVTPEQRQLLEDNYGRKEPEKVAKVKELYE 301
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 638
Score = 26.5 bits (57), Expect = 4.5
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 19/81 (23%)
Query: 74 VHDDLPCMDNDDFRRGKPTNHKVF-----GEDTAILAG-------DALLSLAFEHVAAKS 121
+P R P ++ GE L DA+ + +H +
Sbjct: 537 AFGSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAARAQHTNNNT 596
Query: 122 TE-------ISPDRVVRAIAE 135
E +P+++ A +
Sbjct: 597 KELFRLDSPATPEKIRNACVD 617
>d3bjha_ a.39.2.1 (A:) Pheromone-binding protein asp1 {Common
honeybee (Apis mellifera) [TaxId: 7460]}
Length = 117
Score = 24.9 bits (54), Expect = 6.5
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 190 GNMIEVERVRKYARCIGLLFQVVDD 214
GN++ + Y C+ F +VDD
Sbjct: 35 GNLVNEPSITCYMYCLLEAFSLVDD 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.380
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,010,346
Number of extensions: 46029
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 9
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)