BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038405
(863 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 36/245 (14%)
Query: 142 LPRPPVDGMATEKTVGA-DSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLD 200
+P+ PV + +K V A KL ++ G + ++GM G GK L +
Sbjct: 125 VPQRPVVFVTRKKLVNAIQQKLSKLKG-----EPGWVTIHGMAGCGKSVLAAEAVRDHSL 179
Query: 201 VNHCF-DLVIFVAVSKE---GNLEKIQEVIRKKLDISDYI-----WNMKGEYDRAVEILI 251
+ CF V +V+V K+ G L K+Q + +LD + N++ DR + IL+
Sbjct: 180 LEGCFPGGVHWVSVGKQDKSGLLMKLQNLC-TRLDQDESFSQRLPLNIEEAKDR-LRILM 237
Query: 252 SLRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVCVECLSPEAALDLFR 311
+ + +L+LDDVW+ L S CQ I+ TTR + V + P+ + +
Sbjct: 238 LRKHPRSLLILDDVWDSWVLKAFD---SQCQ----ILLTTRDKSVTDSVMGPKYVVPV-E 289
Query: 312 YKVGED---------VFNSHPEIPTLAQAVVGECKGLPLALITIARAMSSRRSPREWQYV 362
+G++ V ++P A +++ ECKG PL + I + R P W+Y
Sbjct: 290 SSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYY 347
Query: 363 IDELQ 367
+ +LQ
Sbjct: 348 LKQLQ 352
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 36/245 (14%)
Query: 142 LPRPPVDGMATEKTVGA-DSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLD 200
+P+ PV + +K V A KL ++ G + ++GM G GK L +
Sbjct: 119 VPQRPVVFVTRKKLVNAIQQKLSKLKG-----EPGWVTIHGMAGCGKSVLAAEAVRDHSL 173
Query: 201 VNHCF-DLVIFVAVSKE---GNLEKIQEVIRKKLDISDYI-----WNMKGEYDRAVEILI 251
+ CF V +V+V K+ G L K+Q + +LD + N++ DR + IL+
Sbjct: 174 LEGCFPGGVHWVSVGKQDKSGLLMKLQNLC-TRLDQDESFSQRLPLNIEEAKDR-LRILM 231
Query: 252 SLRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVCVECLSPEAALDLFR 311
+ + +L+LDDVW+ L S CQ I+ TTR + V + P+ + +
Sbjct: 232 LRKHPRSLLILDDVWDSWVLKAFD---SQCQ----ILLTTRDKSVTDSVMGPKYVVPV-E 283
Query: 312 YKVGED---------VFNSHPEIPTLAQAVVGECKGLPLALITIARAMSSRRSPREWQYV 362
+G++ V ++P A +++ ECKG PL + I + R P W+Y
Sbjct: 284 SSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYY 341
Query: 363 IDELQ 367
+ +LQ
Sbjct: 342 LKQLQ 346
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 34/244 (13%)
Query: 142 LPRPPVDGMATEKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDV 201
+P+ PV + +K V A + ++W + TI YGM G GK L + +
Sbjct: 119 VPQRPVIFVTRKKLVHAIQQ--KLWKLNGEPGWVTI--YGMAGCGKSVLAAEAVRDHSLL 174
Query: 202 NHCFDL-VIFVAVSKE---GNLEKIQEVIRKKLDISDYI-----WNMKGEYDRAVEILIS 252
CF V +V++ K+ G L K+Q + + LD + N++ DR + +L+
Sbjct: 175 EGCFSGGVHWVSIGKQDKSGLLMKLQNLCMR-LDQEESFSQRLPLNIEEAKDR-LRVLML 232
Query: 253 LRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVCVECLSPEAAL----D 308
+ + +L+LDDVW+ L N +I+ TTR + V + P+ +
Sbjct: 233 RKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESG 285
Query: 309 LFRYKVGEDVFN-----SHPEIPTLAQAVVGECKGLPLALITIARAMSSRRSPREWQYVI 363
L R K G ++ + ++P A +++ ECKG PL + I + R P W Y +
Sbjct: 286 LGREK-GLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYL 342
Query: 364 DELQ 367
+LQ
Sbjct: 343 RQLQ 346
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 109/244 (44%), Gaps = 34/244 (13%)
Query: 142 LPRPPVDGMATEKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDV 201
+P+ PV + +K V A + ++W + TI YGM G GK L + +
Sbjct: 126 VPQRPVIFVTRKKLVHAIQQ--KLWKLNGEPGWVTI--YGMAGCGKSVLAAEAVRDHSLL 181
Query: 202 NHCFDL-VIFVAVSKE---GNLEKIQEVIRKKLDISDYI-----WNMKGEYDRAVEILIS 252
CF V +V++ K+ G L K+Q + + LD + N++ DR + +L+
Sbjct: 182 EGCFSGGVHWVSIGKQDKSGLLMKLQNLCMR-LDQEESFSQRLPLNIEEAKDR-LRVLML 239
Query: 253 LRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVCVECLSPEAAL----D 308
+ + +L+LDDVW+ L N +I+ TT + V + P+ +
Sbjct: 240 RKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTSDKSVTDSVMGPKHVVPVESG 292
Query: 309 LFRYKVGEDVFN-----SHPEIPTLAQAVVGECKGLPLALITIARAMSSRRSPREWQYVI 363
L R K G ++ + ++P A +++ ECKG PL + I + R P W Y +
Sbjct: 293 LGREK-GLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYL 349
Query: 364 DELQ 367
+LQ
Sbjct: 350 RQLQ 353
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 31/137 (22%)
Query: 467 DVVRDMALWLASNESKILVQRSSDCTNKSADSWREDF--RLSLWGSSIEYLPETPCPHLQ 524
D D LW A + S + + N SA+ ++ DF RL L G+S+ LP
Sbjct: 218 DSKYDDQLWHALDLSNLQI------FNISANIFKYDFLTRLYLNGNSLTELPA------- 264
Query: 525 TLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEEL 584
EI +++ L+VLDLS+N LT LPAE+G+ L+ + + L
Sbjct: 265 ---------EI------KNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 585 PSEIMYLKNLKILLLDG 601
P E L NL+ L ++G
Sbjct: 309 PWEFGNLCNLQFLGVEG 325
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 549 VLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLLDGMR 603
LDLS NL + + A + L L L+ S+ ELP+EI L NL++L L R
Sbjct: 228 ALDLS-NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR 281
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 488 SSDCTNKSADSWREDFRLSLWGS---SIEYLPETPCPHLQTLLVRFTVLEI-FPHRFFES 543
+SDC N + R L+L + +E CP L+ L V FT L + PH F++
Sbjct: 363 ASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQN 422
Query: 544 MGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEE 583
+ L+VL+LS+ L T + L +LR LNL S ++
Sbjct: 423 LHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD 462
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 541 FESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIE-ELPSEIMYLKNLKILLL 599
F++ G++ LD+SYN+ +P E+G++ L LNL + I +P E+ L+ L IL L
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 600 DGMRHFHLIP 609
+ IP
Sbjct: 685 SSNKLDGRIP 694
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 547 LKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIE-ELPSEIMYLKNLKILLLD 600
L L LS+N +P+ +G+L LR L L +E E+P E+MY+K L+ L+LD
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 541 FESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIE-ELPSEIMYLKNLKILLL 599
F++ G++ LD+SYN+ +P E+G++ L LNL + I +P E+ L+ L IL L
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 600 DGMRHFHLIP 609
+ IP
Sbjct: 688 SSNKLDGRIP 697
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 547 LKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIE-ELPSEIMYLKNLKILLLD 600
L L LS+N +P+ +G+L LR L L +E E+P E+MY+K L+ L+LD
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 523 LQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP---------AEMGALINLRC 573
L+TL + L P S+ L+ L + +LT+LP E L+NL+
Sbjct: 129 LETLTLARNPLRALPASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 574 LNLSNTSIEELPSEIMYLKNLKIL 597
L L T I LP+ I L+NLK L
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSL 211
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 522 HLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLNLSNTS 580
+L+ L + L P F+S+ L VLDL N LT LP A L++L+ L +
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNK 123
Query: 581 IEELPSEIMYLKNLKILLLD 600
+ ELP I L +L L LD
Sbjct: 124 LTELPRGIERLTHLTHLALD 143
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580
P L L V F L P +G L+ L L N T P + L L+L+N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 581 IEELPSEIMY-LKNLKILLL 599
+ ELP+ ++ L+NL LLL
Sbjct: 160 LTELPAGLLNGLENLDTLLL 179
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580
P L L V F L P +G L+ L L N T P + L L+L+N +
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 581 IEELPSEIMY-LKNLKILLLD---------GMRHFHLIP 609
+ ELP+ ++ L+NL LLL G HL+P
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580
P L L V F L P +G L+ L L N T P + L L+L+N +
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 581 IEELPSEIMY-LKNLKILLLD---------GMRHFHLIP 609
+ ELP+ ++ L+NL LLL G HL+P
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580
P L L V F L P +G L+ L L N T P + L L+L+N +
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 581 IEELPSEIMY-LKNLKILLLD---------GMRHFHLIP 609
+ ELP+ ++ L+NL LLL G HL+P
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580
P L L V F L P +G L+ L L N T P + L L+L+N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 581 IEELPSEIMY-LKNLKILLLD---------GMRHFHLIP 609
+ ELP+ ++ L+NL LLL G HL+P
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580
P L L V F L P +G L+ L L N T P + L L+L+N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 581 IEELPSEIMY-LKNLKILLLD---------GMRHFHLIP 609
+ ELP+ ++ L+NL LLL G HL+P
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580
P L L V F L P +G L+ L L N T P + L L+L+N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANND 159
Query: 581 IEELPSEIMY-LKNLKILLLD---------GMRHFHLIP 609
+ ELP+ ++ L+NL LLL G HL+P
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580
P L L V F L P +G L+ L L N T P + L L+L+N +
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 581 IEELPSEIMY-LKNLKILLLD---------GMRHFHLIP 609
+ ELP+ ++ L+NL LLL G HL+P
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLNLSN 578
C +LQ L+++ + + F S+G+L+ LDLS N L+ L + G L +L+ LNL
Sbjct: 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMG 107
Query: 579 TSIEELPSEIMY--LKNLKILLLDGMRHF 605
+ L ++ L NL+ L + + F
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETF 136
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580
P L L V F L P +G L+ L L N T P + L L+L+N +
Sbjct: 101 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 160
Query: 581 IEELPSEIMY-LKNLKILLLD---------GMRHFHLIP 609
+ ELP+ ++ L+NL LLL G HL+P
Sbjct: 161 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 199
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLNLSN 578
C +LQ L+++ + + F S+G+L+ LDLS N L+ L + G L +L+ LNL
Sbjct: 75 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMG 133
Query: 579 TSIEELPSEIMY--LKNLKILLLDGMRHF 605
+ L ++ L NL+ L + + F
Sbjct: 134 NPYQTLGVTSLFPNLTNLQTLRIGNVETF 162
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLNLSN 578
C +LQ L++ + F S+G+L+ LDLSYN L+ L + L +L LNL
Sbjct: 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLG 133
Query: 579 TSIEEL--PSEIMYLKNLKILLLDGMRHFHLIPAR 611
+ L S +L L+IL + M F I +
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 539 RFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLNLSNTSIEELPSEIMY 590
R FE++ LKVL+L+YN + ++ E L NL+ LNLS + EL S Y
Sbjct: 284 RVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 522 HLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEM-GALINLRCLNLSNTS 580
+L L + L+ P R F+S+ L L L YN +L LP + L +L+ L L N
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ 168
Query: 581 IEELPSEIM-YLKNLKILLLD 600
++ +P L LK L LD
Sbjct: 169 LKRVPEGAFDKLTELKTLKLD 189
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 22/103 (21%)
Query: 216 EGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWE-------- 267
EG +K+ E+ KLD + +G +D SL + K + L ++ W+
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFD-------SLEKLKMLQLQENPWDCTCNGIIY 226
Query: 268 -------RLDLSKTGVSLSDCQNGSKIVFTTRSEEVCVECLSP 303
+ D GV + C+ G K V ++ +C+SP
Sbjct: 227 MAKWLKKKADEGLGGVDTAGCEKGGKAVLEITEKDAASDCVSP 269
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 32/114 (28%)
Query: 700 HLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQ 759
H+ + I + TF W N H + H W EA +
Sbjct: 2 HMAVIRIADERDRVQKKTFTKWVNKHLIKH-------------WRAEAQ----------R 38
Query: 760 ALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVT 813
+S++ E ++ + HN + L V+ DSLP K G M F LQNV +
Sbjct: 39 HISDLYE-----DLRDGHNLISLLEVLSGDSLPREK----GRMRFHKLQNVQIA 83
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580
P L L V F L P +G L+ L L N T P + L L+L+N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 581 IEELPSEIMY-LKNLKILLLD---------GMRHFHLIP 609
+ ELP+ ++ L+NL LLL G HL+P
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 127 RLEGQDFESVYFTYKLPR---PPVDGMATEKTVGADSK--LDEVWGCIEDQSEQTIGLYG 181
+++G + V FT K P PV AT V ++ ++WG IE + T+ + G
Sbjct: 162 KIKGYNVPGV-FTSKPPELWGNPVREYATGFGVAVATREMAKKLWGGIEGK---TVAIQG 217
Query: 182 MGGVGKITL--LKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQE 224
MG VG+ T L+K K + V+ VA KEG N+E IQ+
Sbjct: 218 MGNVGRWTAYWLEKMGAKVIAVSDING----VAYRKEGLNVELIQK 259
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 520 CPHLQTLLVRFTVLEI-FPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSN 578
CP L+ L + FT L I P F+++ L+VL+L+Y T + L LR LNL
Sbjct: 396 CPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKG 455
Query: 579 TSIEE 583
++
Sbjct: 456 NHFQD 460
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 446
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 270 DLSKTGVSLSDCQNGSKIVFTTRSEEVCVECLSPEAALDLFRYKVGEDVFNSHPEIPTLA 329
DL K +++ DC + + E + + P+ +L RY+ +D+ IP +
Sbjct: 246 DLGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVR 305
Query: 330 QAVVGECK 337
+ VG K
Sbjct: 306 E--VGRTK 311
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%)
Query: 522 HLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSI 581
HL L + L R FE++ L+VLDLSYN L NL+ L L +
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Query: 582 EELPSEIM 589
+ +P I
Sbjct: 384 KSVPDGIF 391
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 505 LSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL 561
L L + I Y+ + C +LQ L++ + F S+G+L+ LDLSYN L+ L
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNL 89
Query: 562 PAE-MGALINLRCLNLSNTSIEEL--PSEIMYLKNLKILLLDGMRHFHLIPAR 611
+ L +L LNL + L S +L L+IL + M F I +
Sbjct: 90 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 142
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 511 SIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALI 569
+ EYL + L+ L +R +E P F + +L+ LDL L + A L+
Sbjct: 102 AFEYLSK-----LRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 570 NLRCLNLSNTSIEELPSEIMYLKNLKILLLDGMR 603
NLR LNL +++++P+ + L L+ L L G R
Sbjct: 157 NLRYLNLGMCNLKDIPN-LTALVRLEELELSGNR 189
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 32/97 (32%)
Query: 717 TFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAES 776
TF W N H + H W EA + +S++ E ++ +
Sbjct: 16 TFTKWVNKHLIKH-------------WRAEAQ----------RHISDLYE-----DLRDG 47
Query: 777 HNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVT 813
HN + L V+ DSLP K G M F LQNV +
Sbjct: 48 HNLISLLEVLSGDSLPREK----GRMRFHKLQNVQIA 80
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 511 SIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALI 569
+ EYL + L+ L +R +E P F + +L+ LDL L + A L+
Sbjct: 102 AFEYLSK-----LRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 570 NLRCLNLSNTSIEELPSEIMYLKNLKILLLDGMR 603
NLR LNL +++++P+ + L L+ L L G R
Sbjct: 157 NLRYLNLGMCNLKDIPN-LTALVRLEELELSGNR 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,549,991
Number of Sequences: 62578
Number of extensions: 986073
Number of successful extensions: 2450
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2372
Number of HSP's gapped (non-prelim): 102
length of query: 863
length of database: 14,973,337
effective HSP length: 107
effective length of query: 756
effective length of database: 8,277,491
effective search space: 6257783196
effective search space used: 6257783196
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)