Query 038405
Match_columns 863
No_of_seqs 583 out of 4375
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-98 3E-103 874.2 49.5 828 6-856 3-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.5E-63 1.4E-67 608.9 45.9 615 153-824 184-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.1E-44 4.6E-49 382.2 15.5 271 158-430 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.6E-21 3.4E-26 242.2 13.6 109 520-629 163-272 (968)
5 PLN00113 leucine-rich repeat r 99.8 4.2E-21 9.2E-26 238.4 15.6 302 498-814 116-437 (968)
6 KOG4194 Membrane glycoprotein 99.8 2.6E-22 5.7E-27 210.5 3.1 305 499-815 101-426 (873)
7 KOG0444 Cytoskeletal regulator 99.8 1.1E-22 2.3E-27 214.4 -1.9 307 498-823 53-380 (1255)
8 PLN03210 Resistant to P. syrin 99.8 1.9E-18 4.1E-23 214.6 20.5 298 498-821 609-946 (1153)
9 KOG4194 Membrane glycoprotein 99.8 5E-20 1.1E-24 193.6 3.7 325 502-854 80-430 (873)
10 KOG0444 Cytoskeletal regulator 99.8 1.4E-20 3E-25 198.6 -1.9 269 498-799 101-380 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 5.1E-19 1.1E-23 178.3 -0.8 210 497-713 88-311 (565)
12 KOG0618 Serine/threonine phosp 99.6 1.5E-17 3.3E-22 184.6 -3.1 100 501-602 46-147 (1081)
13 KOG0472 Leucine-rich repeat pr 99.6 3.4E-18 7.5E-23 172.3 -8.1 235 502-759 70-308 (565)
14 PRK15387 E3 ubiquitin-protein 99.6 7.8E-15 1.7E-19 169.0 14.3 110 505-630 206-315 (788)
15 PRK15370 E3 ubiquitin-protein 99.6 1.4E-14 3E-19 168.1 12.5 246 502-791 180-425 (754)
16 KOG0618 Serine/threonine phosp 99.5 6.7E-16 1.4E-20 171.7 -0.1 265 501-793 220-488 (1081)
17 KOG4237 Extracellular matrix p 99.5 5.2E-15 1.1E-19 149.6 1.1 250 506-761 52-335 (498)
18 PRK15370 E3 ubiquitin-protein 99.5 3.1E-14 6.7E-19 165.3 7.3 225 500-760 199-427 (754)
19 PRK15387 E3 ubiquitin-protein 99.5 3.3E-13 7.1E-18 155.7 15.1 234 500-791 222-455 (788)
20 KOG4658 Apoptotic ATPase [Sign 99.4 1.9E-13 4.1E-18 161.2 9.0 298 501-824 546-866 (889)
21 KOG0617 Ras suppressor protein 99.4 7.6E-15 1.6E-19 131.3 -2.8 163 494-661 27-193 (264)
22 KOG0617 Ras suppressor protein 99.3 3E-14 6.5E-19 127.5 -4.0 162 515-716 26-190 (264)
23 PRK04841 transcriptional regul 99.3 6.8E-11 1.5E-15 146.6 22.9 286 150-477 11-332 (903)
24 KOG4237 Extracellular matrix p 99.3 8.8E-13 1.9E-17 133.7 1.6 256 501-759 68-357 (498)
25 TIGR03015 pepcterm_ATPase puta 99.2 4.2E-09 9.1E-14 110.4 22.5 172 172-350 41-242 (269)
26 COG2909 MalT ATP-dependent tra 99.1 4.9E-09 1.1E-13 117.7 19.4 289 147-477 13-338 (894)
27 PRK00411 cdc6 cell division co 99.1 4E-09 8.8E-14 117.1 18.7 282 153-455 30-357 (394)
28 cd00116 LRR_RI Leucine-rich re 99.1 5.4E-11 1.2E-15 128.5 3.1 106 520-628 22-148 (319)
29 PF01637 Arch_ATPase: Archaeal 99.0 7.3E-10 1.6E-14 113.6 10.4 184 155-345 1-233 (234)
30 cd00116 LRR_RI Leucine-rich re 99.0 8.7E-11 1.9E-15 126.8 3.2 102 526-629 3-120 (319)
31 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.4E-16 129.5 -2.1 212 505-736 55-271 (722)
32 TIGR02928 orc1/cdc6 family rep 99.0 9.1E-08 2E-12 105.2 25.7 285 153-456 15-350 (365)
33 TIGR00635 ruvB Holliday juncti 99.0 1.4E-08 2.9E-13 108.6 16.3 256 153-457 4-290 (305)
34 PRK00080 ruvB Holliday junctio 98.9 1.5E-08 3.3E-13 108.8 15.1 265 153-457 25-311 (328)
35 PF14580 LRR_9: Leucine-rich r 98.8 4.9E-09 1.1E-13 99.4 5.6 104 520-628 18-124 (175)
36 PF05729 NACHT: NACHT domain 98.8 1.9E-08 4E-13 97.0 9.8 131 175-314 1-163 (166)
37 PF14580 LRR_9: Leucine-rich r 98.8 5E-09 1.1E-13 99.3 5.4 122 501-626 20-149 (175)
38 KOG3207 Beta-tubulin folding c 98.8 2E-09 4.3E-14 111.4 2.6 103 499-602 120-232 (505)
39 KOG3207 Beta-tubulin folding c 98.7 5.9E-09 1.3E-13 107.9 1.4 204 520-760 120-338 (505)
40 KOG0532 Leucine-rich repeat (L 98.6 7.5E-10 1.6E-14 117.8 -6.3 152 504-662 79-232 (722)
41 COG4886 Leucine-rich repeat (L 98.6 3.2E-08 7E-13 110.0 6.0 102 521-626 116-218 (394)
42 KOG1259 Nischarin, modulator o 98.6 7.2E-09 1.6E-13 101.7 -0.1 130 496-630 280-412 (490)
43 COG4886 Leucine-rich repeat (L 98.6 4.3E-08 9.2E-13 109.1 6.0 104 525-632 97-201 (394)
44 PRK06893 DNA replication initi 98.6 3.4E-07 7.4E-12 92.7 12.0 142 172-346 37-203 (229)
45 KOG4341 F-box protein containi 98.6 5.1E-09 1.1E-13 107.8 -2.4 284 522-823 139-444 (483)
46 PRK13342 recombination factor 98.6 3.8E-07 8.2E-12 101.1 11.9 167 153-349 12-199 (413)
47 KOG1259 Nischarin, modulator o 98.6 2E-08 4.3E-13 98.7 1.3 133 567-740 282-414 (490)
48 COG2256 MGS1 ATPase related to 98.5 4.3E-07 9.3E-12 94.0 10.9 160 153-341 24-207 (436)
49 COG3899 Predicted ATPase [Gene 98.5 7.7E-07 1.7E-11 106.3 13.4 299 154-475 1-384 (849)
50 cd00009 AAA The AAA+ (ATPases 98.5 7.7E-07 1.7E-11 83.7 10.4 122 156-294 1-130 (151)
51 TIGR02903 spore_lon_C ATP-depe 98.5 1.8E-05 3.9E-10 91.5 23.2 193 153-349 154-398 (615)
52 PRK04195 replication factor C 98.5 8E-06 1.7E-10 92.5 19.8 170 153-351 14-207 (482)
53 PF13855 LRR_8: Leucine rich r 98.5 1.3E-07 2.7E-12 73.5 3.7 58 522-580 2-60 (61)
54 KOG4341 F-box protein containi 98.4 2.4E-08 5.2E-13 102.9 -1.1 276 501-796 139-441 (483)
55 PTZ00112 origin recognition co 98.4 2.8E-06 6.1E-11 96.7 15.0 198 153-351 755-987 (1164)
56 PRK05564 DNA polymerase III su 98.4 4.2E-06 9E-11 89.4 15.8 166 153-344 4-188 (313)
57 PTZ00202 tuzin; Provisional 98.4 9.8E-06 2.1E-10 85.7 17.6 151 149-313 258-433 (550)
58 PF13855 LRR_8: Leucine rich r 98.4 1.9E-07 4.2E-12 72.5 3.9 57 570-627 2-59 (61)
59 PF13173 AAA_14: AAA domain 98.4 3.3E-07 7.1E-12 83.6 6.0 101 174-297 2-102 (128)
60 PRK07003 DNA polymerase III su 98.4 6.5E-06 1.4E-10 93.5 17.2 185 153-348 16-223 (830)
61 cd01128 rho_factor Transcripti 98.4 5.4E-07 1.2E-11 91.2 7.6 94 172-268 14-115 (249)
62 KOG1909 Ran GTPase-activating 98.4 9.6E-08 2.1E-12 96.5 1.4 109 520-629 29-169 (382)
63 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.3E-06 5.1E-11 87.0 11.6 156 158-346 22-201 (226)
64 PRK12402 replication factor C 98.4 4.1E-06 8.9E-11 91.1 13.8 183 153-344 15-224 (337)
65 PF13401 AAA_22: AAA domain; P 98.4 6.4E-07 1.4E-11 82.4 6.1 117 173-293 3-125 (131)
66 PLN03150 hypothetical protein; 98.3 1.1E-06 2.4E-11 102.4 8.6 106 522-628 419-526 (623)
67 COG1474 CDC6 Cdc6-related prot 98.3 3E-05 6.5E-10 83.4 18.6 189 154-346 18-238 (366)
68 KOG2028 ATPase related to the 98.3 3.6E-06 7.9E-11 85.3 10.6 138 153-313 138-293 (554)
69 PRK12323 DNA polymerase III su 98.3 8.8E-06 1.9E-10 91.2 14.7 184 153-345 16-224 (700)
70 PLN03025 replication factor C 98.3 4.9E-06 1.1E-10 89.1 12.4 168 153-341 13-195 (319)
71 PRK14961 DNA polymerase III su 98.3 1.4E-05 3.1E-10 86.9 16.1 179 153-343 16-217 (363)
72 PRK14949 DNA polymerase III su 98.3 8.5E-06 1.8E-10 94.5 14.7 168 153-344 16-218 (944)
73 PRK00440 rfc replication facto 98.3 1.6E-05 3.5E-10 85.7 15.6 168 153-343 17-200 (319)
74 PF13191 AAA_16: AAA ATPase do 98.3 1.5E-06 3.3E-11 85.4 6.8 45 154-198 1-48 (185)
75 COG3903 Predicted ATPase [Gene 98.3 1.9E-06 4E-11 90.1 7.3 283 173-476 13-313 (414)
76 PRK14960 DNA polymerase III su 98.3 1.4E-05 3E-10 89.9 14.6 180 153-344 15-217 (702)
77 PRK08727 hypothetical protein; 98.2 1.3E-05 2.8E-10 81.4 13.1 158 153-343 19-201 (233)
78 PRK14963 DNA polymerase III su 98.2 2E-05 4.4E-10 88.5 15.3 188 153-350 14-222 (504)
79 KOG0531 Protein phosphatase 1, 98.2 2.3E-07 5E-12 103.3 -0.1 121 504-630 76-199 (414)
80 PRK14962 DNA polymerase III su 98.2 2E-05 4.4E-10 87.7 15.0 176 153-350 14-223 (472)
81 KOG1909 Ran GTPase-activating 98.2 2.1E-07 4.5E-12 94.1 -1.1 247 541-815 26-308 (382)
82 PRK14956 DNA polymerase III su 98.2 1.5E-05 3.2E-10 87.2 13.0 177 153-341 18-217 (484)
83 PRK08691 DNA polymerase III su 98.2 2.5E-05 5.5E-10 88.7 15.0 168 153-344 16-218 (709)
84 PRK13341 recombination factor 98.2 1E-05 2.2E-10 94.4 12.1 158 153-340 28-211 (725)
85 PRK14957 DNA polymerase III su 98.2 2.6E-05 5.7E-10 87.7 14.8 175 153-350 16-225 (546)
86 PRK09376 rho transcription ter 98.2 2.8E-06 6.1E-11 89.5 6.6 99 165-267 159-267 (416)
87 PRK06645 DNA polymerase III su 98.2 4.3E-05 9.4E-10 85.4 16.4 183 153-343 21-226 (507)
88 PF05496 RuvB_N: Holliday junc 98.2 2.7E-05 5.9E-10 75.6 12.6 159 153-345 24-220 (233)
89 PRK05896 DNA polymerase III su 98.2 3.2E-05 7E-10 87.0 15.0 184 153-348 16-223 (605)
90 PRK07471 DNA polymerase III su 98.2 4.7E-05 1E-09 82.0 15.8 186 151-346 17-238 (365)
91 PRK07940 DNA polymerase III su 98.1 4.6E-05 9.9E-10 82.9 15.2 161 153-346 5-213 (394)
92 PRK14964 DNA polymerase III su 98.1 5.1E-05 1.1E-09 84.1 15.7 168 153-342 13-213 (491)
93 KOG2982 Uncharacterized conser 98.1 2.1E-06 4.7E-11 84.7 4.3 200 542-756 68-287 (418)
94 PRK14955 DNA polymerase III su 98.1 5.6E-05 1.2E-09 83.3 15.6 189 153-346 16-229 (397)
95 PRK14958 DNA polymerase III su 98.1 4.1E-05 8.9E-10 86.3 14.7 168 153-343 16-217 (509)
96 TIGR02397 dnaX_nterm DNA polym 98.1 7.5E-05 1.6E-09 81.8 16.6 171 153-346 14-218 (355)
97 KOG2120 SCF ubiquitin ligase, 98.1 2.2E-07 4.7E-12 91.6 -3.3 81 546-627 186-270 (419)
98 KOG2120 SCF ubiquitin ligase, 98.1 1.5E-07 3.4E-12 92.6 -4.4 179 569-791 185-373 (419)
99 PRK08084 DNA replication initi 98.1 3E-05 6.5E-10 78.8 11.9 158 154-344 23-207 (235)
100 PRK14951 DNA polymerase III su 98.1 6.2E-05 1.3E-09 85.9 15.2 183 153-344 16-223 (618)
101 PRK07994 DNA polymerase III su 98.1 3.8E-05 8.3E-10 87.8 13.4 180 153-344 16-218 (647)
102 PRK14969 DNA polymerase III su 98.0 9.6E-05 2.1E-09 84.0 16.3 174 153-348 16-223 (527)
103 PRK14970 DNA polymerase III su 98.0 0.00011 2.3E-09 80.7 15.6 167 153-341 17-204 (367)
104 PRK09112 DNA polymerase III su 98.0 6.3E-05 1.4E-09 80.6 13.3 190 149-347 19-241 (351)
105 TIGR00678 holB DNA polymerase 98.0 0.00014 3E-09 71.5 14.7 149 164-341 3-186 (188)
106 TIGR00767 rho transcription te 98.0 1.4E-05 3.1E-10 84.8 8.0 94 172-267 166-266 (415)
107 KOG1859 Leucine-rich repeat pr 98.0 4.3E-07 9.4E-12 99.8 -3.8 79 546-628 165-243 (1096)
108 KOG0531 Protein phosphatase 1, 98.0 2.3E-06 5.1E-11 95.3 1.7 126 498-630 93-221 (414)
109 PF12799 LRR_4: Leucine Rich r 98.0 8.2E-06 1.8E-10 57.9 3.7 34 570-603 2-35 (44)
110 PRK09087 hypothetical protein; 98.0 9.1E-05 2E-09 74.5 12.4 132 173-346 43-195 (226)
111 PLN03150 hypothetical protein; 97.9 1.4E-05 2.9E-10 93.4 7.3 84 546-630 419-503 (623)
112 PRK14959 DNA polymerase III su 97.9 0.00014 3.1E-09 82.4 15.0 187 153-351 16-226 (624)
113 KOG1859 Leucine-rich repeat pr 97.9 2.9E-07 6.2E-12 101.1 -6.1 130 495-629 159-291 (1096)
114 PRK09111 DNA polymerase III su 97.9 0.00017 3.7E-09 82.6 15.5 184 153-345 24-232 (598)
115 TIGR01242 26Sp45 26S proteasom 97.9 2.1E-05 4.6E-10 85.9 8.0 160 153-340 122-328 (364)
116 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.5E-10 57.1 3.7 41 545-586 1-41 (44)
117 PHA02544 44 clamp loader, smal 97.9 0.00015 3.3E-09 77.9 13.9 46 153-198 21-67 (316)
118 PRK05642 DNA replication initi 97.9 0.00016 3.4E-09 73.4 13.2 139 174-345 45-207 (234)
119 KOG0989 Replication factor C, 97.9 7.5E-05 1.6E-09 74.9 10.2 171 153-340 36-224 (346)
120 PRK14954 DNA polymerase III su 97.9 0.00022 4.7E-09 81.8 15.2 190 153-347 16-230 (620)
121 PRK14950 DNA polymerase III su 97.9 0.00029 6.2E-09 81.6 16.4 183 153-346 16-221 (585)
122 PRK14952 DNA polymerase III su 97.9 0.00031 6.6E-09 80.0 15.8 187 153-351 13-225 (584)
123 PRK07764 DNA polymerase III su 97.8 0.00024 5.2E-09 84.2 15.2 178 153-342 15-217 (824)
124 PRK11331 5-methylcytosine-spec 97.8 0.00013 2.9E-09 78.9 11.7 108 153-268 175-284 (459)
125 PF00308 Bac_DnaA: Bacterial d 97.8 0.00019 4E-09 72.0 12.0 146 174-341 34-203 (219)
126 PRK06305 DNA polymerase III su 97.8 0.00039 8.5E-09 77.5 15.8 171 153-346 17-223 (451)
127 PRK08903 DnaA regulatory inact 97.8 0.00017 3.7E-09 73.2 11.9 46 153-198 18-66 (227)
128 PRK14971 DNA polymerase III su 97.8 0.0005 1.1E-08 79.4 16.4 168 153-343 17-219 (614)
129 PRK15386 type III secretion pr 97.8 0.00012 2.7E-09 78.2 10.4 61 520-586 51-112 (426)
130 KOG4579 Leucine-rich repeat (L 97.8 4E-06 8.7E-11 73.3 -0.6 89 521-611 53-141 (177)
131 PF05673 DUF815: Protein of un 97.8 0.00057 1.2E-08 67.6 14.1 50 149-198 23-76 (249)
132 PF05621 TniB: Bacterial TniB 97.8 0.00078 1.7E-08 68.9 15.6 182 160-344 44-259 (302)
133 PRK08451 DNA polymerase III su 97.8 0.00052 1.1E-08 77.0 15.7 171 153-345 14-217 (535)
134 KOG2227 Pre-initiation complex 97.8 0.0015 3.2E-08 69.6 17.8 184 152-340 149-362 (529)
135 KOG2543 Origin recognition com 97.8 0.00015 3.3E-09 74.9 10.2 115 153-273 6-132 (438)
136 PRK14948 DNA polymerase III su 97.8 0.00063 1.4E-08 78.6 16.5 184 153-346 16-222 (620)
137 PRK07133 DNA polymerase III su 97.8 0.00048 1E-08 79.5 15.3 178 153-347 18-221 (725)
138 PRK14953 DNA polymerase III su 97.7 0.0007 1.5E-08 76.0 16.1 166 153-345 16-219 (486)
139 PRK03992 proteasome-activating 97.7 0.00012 2.5E-09 80.4 9.3 160 153-340 131-337 (389)
140 PRK15386 type III secretion pr 97.7 8.8E-05 1.9E-09 79.3 7.5 82 500-591 52-137 (426)
141 TIGR02881 spore_V_K stage V sp 97.7 0.0002 4.2E-09 74.4 10.0 45 154-198 7-66 (261)
142 PF14516 AAA_35: AAA-like doma 97.7 0.0028 6E-08 68.0 18.9 189 153-352 11-245 (331)
143 CHL00181 cbbX CbbX; Provisiona 97.7 0.00058 1.3E-08 71.3 13.1 23 176-198 61-83 (287)
144 PRK14087 dnaA chromosomal repl 97.7 0.00031 6.6E-09 78.3 11.6 156 174-347 141-320 (450)
145 KOG4579 Leucine-rich repeat (L 97.6 1E-05 2.2E-10 70.9 -0.2 107 523-632 29-138 (177)
146 PRK06647 DNA polymerase III su 97.6 0.0016 3.4E-08 74.5 16.4 180 153-344 16-218 (563)
147 PTZ00361 26 proteosome regulat 97.6 0.00036 7.9E-09 76.6 10.8 45 154-198 184-241 (438)
148 PRK14965 DNA polymerase III su 97.6 0.0013 2.7E-08 75.9 15.6 186 153-350 16-225 (576)
149 COG2255 RuvB Holliday junction 97.6 0.0017 3.8E-08 64.6 14.1 46 153-198 26-76 (332)
150 TIGR02880 cbbX_cfxQ probable R 97.5 0.00099 2.2E-08 69.7 12.8 23 176-198 60-82 (284)
151 KOG2982 Uncharacterized conser 97.5 2.9E-05 6.3E-10 77.0 1.1 81 546-629 46-133 (418)
152 TIGR02639 ClpA ATP-dependent C 97.5 0.00059 1.3E-08 81.4 12.3 46 153-198 182-227 (731)
153 PRK14088 dnaA chromosomal repl 97.5 0.00087 1.9E-08 74.7 12.7 145 174-340 130-299 (440)
154 PTZ00454 26S protease regulato 97.5 0.00033 7.2E-09 76.4 9.2 46 153-198 145-203 (398)
155 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00077 1.7E-08 81.1 12.6 168 153-339 187-389 (852)
156 PRK05563 DNA polymerase III su 97.5 0.0033 7.1E-08 72.2 16.8 180 153-343 16-217 (559)
157 PRK06620 hypothetical protein; 97.4 0.00049 1.1E-08 68.6 8.8 24 175-198 45-68 (214)
158 smart00382 AAA ATPases associa 97.4 0.00043 9.3E-09 64.2 8.0 89 175-270 3-92 (148)
159 PRK10536 hypothetical protein; 97.4 0.0017 3.8E-08 65.0 12.3 137 153-296 55-215 (262)
160 TIGR00362 DnaA chromosomal rep 97.4 0.001 2.2E-08 74.0 11.8 146 174-341 136-305 (405)
161 KOG3665 ZYG-1-like serine/thre 97.4 8.6E-05 1.9E-09 86.5 3.3 81 520-602 147-230 (699)
162 PRK08116 hypothetical protein; 97.4 0.00024 5.2E-09 73.5 6.2 101 175-293 115-220 (268)
163 PRK00149 dnaA chromosomal repl 97.4 0.001 2.2E-08 74.9 11.4 146 174-341 148-317 (450)
164 PRK05707 DNA polymerase III su 97.4 0.0028 6.1E-08 67.4 13.9 85 255-346 105-203 (328)
165 KOG2004 Mitochondrial ATP-depe 97.4 0.0025 5.3E-08 71.2 13.6 98 152-267 410-516 (906)
166 TIGR00763 lon ATP-dependent pr 97.4 0.0062 1.3E-07 73.3 18.3 46 153-198 320-371 (775)
167 PRK08118 topology modulation p 97.3 0.0001 2.2E-09 70.4 2.2 36 175-210 2-37 (167)
168 COG0466 Lon ATP-dependent Lon 97.3 0.0088 1.9E-07 67.4 17.3 101 153-268 323-429 (782)
169 TIGR03689 pup_AAA proteasome A 97.3 0.0012 2.5E-08 73.8 10.4 46 153-198 182-240 (512)
170 CHL00095 clpC Clp protease ATP 97.3 0.00095 2.1E-08 80.7 10.4 46 153-198 179-224 (821)
171 COG1373 Predicted ATPase (AAA+ 97.3 0.0025 5.4E-08 70.0 12.7 126 158-310 22-163 (398)
172 PRK12422 chromosomal replicati 97.3 0.0021 4.5E-08 71.5 12.2 141 174-338 141-305 (445)
173 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0021 4.5E-08 78.0 12.5 46 153-198 173-218 (852)
174 PF00004 AAA: ATPase family as 97.2 0.00044 9.5E-09 63.4 4.9 22 177-198 1-22 (132)
175 PRK07399 DNA polymerase III su 97.2 0.0082 1.8E-07 63.5 15.0 186 153-346 4-221 (314)
176 KOG3665 ZYG-1-like serine/thre 97.2 0.00049 1.1E-08 80.3 6.3 123 499-624 147-282 (699)
177 COG0593 DnaA ATPase involved i 97.2 0.0015 3.4E-08 70.1 9.5 126 173-318 112-261 (408)
178 PF04665 Pox_A32: Poxvirus A32 97.2 0.00059 1.3E-08 68.1 5.6 35 176-213 15-49 (241)
179 TIGR01241 FtsH_fam ATP-depende 97.1 0.0045 9.8E-08 70.6 13.4 46 153-198 55-112 (495)
180 PRK14086 dnaA chromosomal repl 97.1 0.0035 7.5E-08 71.1 11.9 144 175-340 315-482 (617)
181 PRK10787 DNA-binding ATP-depen 97.1 0.0061 1.3E-07 72.6 14.6 46 153-198 322-373 (784)
182 PRK07261 topology modulation p 97.1 0.0015 3.3E-08 62.7 7.5 68 176-268 2-69 (171)
183 PRK10865 protein disaggregatio 97.1 0.0016 3.4E-08 78.7 9.2 46 153-198 178-223 (857)
184 PRK11034 clpA ATP-dependent Cl 97.1 0.0017 3.8E-08 76.5 9.2 46 153-198 186-231 (758)
185 CHL00176 ftsH cell division pr 97.0 0.0047 1E-07 71.5 12.2 160 153-339 183-387 (638)
186 KOG1644 U2-associated snRNP A' 97.0 0.00075 1.6E-08 63.7 4.5 105 520-627 41-150 (233)
187 TIGR00602 rad24 checkpoint pro 97.0 0.0016 3.5E-08 74.7 8.1 46 153-198 84-134 (637)
188 KOG1644 U2-associated snRNP A' 97.0 0.00085 1.8E-08 63.3 4.8 101 501-602 43-150 (233)
189 COG1222 RPT1 ATP-dependent 26S 97.0 0.013 2.8E-07 60.6 13.2 184 156-367 154-393 (406)
190 PRK08769 DNA polymerase III su 97.0 0.02 4.3E-07 60.5 14.9 171 159-346 10-208 (319)
191 PRK08181 transposase; Validate 97.0 0.0009 2E-08 68.8 4.8 105 167-294 101-209 (269)
192 PF13177 DNA_pol3_delta2: DNA 96.9 0.0062 1.4E-07 57.8 9.7 120 157-295 1-143 (162)
193 PRK12608 transcription termina 96.9 0.005 1.1E-07 65.4 9.8 105 161-267 119-231 (380)
194 KOG2123 Uncharacterized conser 96.9 0.00015 3.1E-09 71.5 -1.6 100 521-624 19-124 (388)
195 PRK08058 DNA polymerase III su 96.8 0.019 4.2E-07 61.5 14.1 45 154-198 6-52 (329)
196 PRK10865 protein disaggregatio 96.8 0.063 1.4E-06 65.2 19.7 46 153-198 568-622 (857)
197 COG0542 clpA ATP-binding subun 96.8 0.041 8.9E-07 63.9 16.9 104 154-268 492-605 (786)
198 PRK06835 DNA replication prote 96.8 0.018 3.9E-07 61.2 12.9 36 175-213 184-219 (329)
199 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0015 3.1E-08 69.1 4.4 45 154-198 52-102 (361)
200 PLN00020 ribulose bisphosphate 96.7 0.0096 2.1E-07 62.6 10.1 27 172-198 146-172 (413)
201 KOG0733 Nuclear AAA ATPase (VC 96.7 0.02 4.4E-07 63.0 12.6 91 154-267 191-293 (802)
202 PRK06871 DNA polymerase III su 96.7 0.05 1.1E-06 57.6 15.5 165 161-343 10-200 (325)
203 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0058 1.3E-07 62.3 8.2 92 173-267 68-174 (274)
204 PRK09183 transposase/IS protei 96.7 0.0024 5.3E-08 65.7 5.6 25 174-198 102-126 (259)
205 PF13207 AAA_17: AAA domain; P 96.7 0.0012 2.5E-08 59.6 2.8 23 176-198 1-23 (121)
206 PRK06526 transposase; Provisio 96.7 0.0014 3.1E-08 67.0 3.7 25 174-198 98-122 (254)
207 TIGR02237 recomb_radB DNA repa 96.7 0.0086 1.9E-07 59.9 9.3 48 173-224 11-58 (209)
208 PRK06921 hypothetical protein; 96.7 0.0019 4.2E-08 66.6 4.7 39 173-213 116-154 (266)
209 cd01393 recA_like RecA is a b 96.6 0.015 3.2E-07 59.0 11.0 91 173-267 18-125 (226)
210 PRK10867 signal recognition pa 96.6 0.036 7.9E-07 61.0 14.5 91 173-266 99-193 (433)
211 COG3267 ExeA Type II secretory 96.6 0.07 1.5E-06 52.9 14.8 172 172-348 49-247 (269)
212 PRK12727 flagellar biosynthesi 96.6 0.069 1.5E-06 59.4 16.5 87 174-266 350-438 (559)
213 PRK12377 putative replication 96.6 0.0076 1.7E-07 61.2 8.5 75 173-267 100-174 (248)
214 PF00448 SRP54: SRP54-type pro 96.6 0.0058 1.3E-07 59.9 7.3 88 175-265 2-92 (196)
215 PF01695 IstB_IS21: IstB-like 96.6 0.00092 2E-08 64.5 1.7 73 174-267 47-119 (178)
216 COG2607 Predicted ATPase (AAA+ 96.6 0.025 5.4E-07 55.2 11.2 117 151-297 58-186 (287)
217 COG5238 RNA1 Ran GTPase-activa 96.6 0.0012 2.5E-08 65.1 2.3 42 588-629 88-132 (388)
218 PF02562 PhoH: PhoH-like prote 96.6 0.0038 8.3E-08 60.9 5.7 131 157-296 4-158 (205)
219 KOG2739 Leucine-rich acidic nu 96.6 0.00096 2.1E-08 65.8 1.5 105 520-626 42-152 (260)
220 KOG1514 Origin recognition com 96.5 0.061 1.3E-06 60.6 15.3 131 155-291 398-546 (767)
221 PRK09361 radB DNA repair and r 96.5 0.0061 1.3E-07 61.8 7.3 89 173-266 22-117 (225)
222 KOG0991 Replication factor C, 96.5 0.0046 1E-07 59.5 5.5 65 153-219 27-92 (333)
223 PRK00771 signal recognition pa 96.5 0.1 2.3E-06 57.6 16.8 89 173-266 94-185 (437)
224 KOG0741 AAA+-type ATPase [Post 96.5 0.046 1E-06 59.2 13.3 135 172-336 536-704 (744)
225 TIGR02640 gas_vesic_GvpN gas v 96.5 0.021 4.6E-07 59.1 10.9 57 159-223 8-64 (262)
226 PRK06090 DNA polymerase III su 96.4 0.077 1.7E-06 56.0 14.9 154 160-346 10-201 (319)
227 cd01394 radB RadB. The archaea 96.4 0.013 2.8E-07 59.0 9.0 43 173-218 18-60 (218)
228 PRK04296 thymidine kinase; Pro 96.4 0.0027 5.9E-08 62.1 3.8 113 175-295 3-117 (190)
229 PRK07993 DNA polymerase III su 96.4 0.092 2E-06 56.2 15.6 167 160-344 9-202 (334)
230 KOG0739 AAA+-type ATPase [Post 96.4 0.9 1.9E-05 46.0 20.6 159 154-339 134-334 (439)
231 COG0572 Udk Uridine kinase [Nu 96.4 0.019 4.1E-07 56.0 9.0 79 173-257 7-85 (218)
232 PRK08939 primosomal protein Dn 96.3 0.0087 1.9E-07 63.1 7.3 116 157-293 135-260 (306)
233 COG0470 HolB ATPase involved i 96.3 0.018 3.9E-07 62.1 9.9 124 154-295 2-150 (325)
234 PRK07952 DNA replication prote 96.3 0.018 3.9E-07 58.3 9.0 89 161-268 84-174 (244)
235 PRK06696 uridine kinase; Valid 96.3 0.0049 1.1E-07 62.2 4.9 42 157-198 2-46 (223)
236 TIGR01243 CDC48 AAA family ATP 96.3 0.013 2.8E-07 70.4 9.3 46 153-198 178-236 (733)
237 CHL00195 ycf46 Ycf46; Provisio 96.3 0.021 4.6E-07 64.0 10.4 46 153-198 228-283 (489)
238 KOG0736 Peroxisome assembly fa 96.3 0.14 3E-06 58.3 16.3 92 153-267 672-775 (953)
239 TIGR02012 tigrfam_recA protein 96.3 0.012 2.6E-07 61.8 7.7 88 172-267 53-144 (321)
240 PRK05541 adenylylsulfate kinas 96.3 0.0087 1.9E-07 58.0 6.3 36 173-211 6-41 (176)
241 TIGR01243 CDC48 AAA family ATP 96.3 0.025 5.5E-07 67.9 11.5 46 153-198 453-511 (733)
242 TIGR00959 ffh signal recogniti 96.3 0.095 2.1E-06 57.7 14.9 91 173-266 98-192 (428)
243 KOG1947 Leucine rich repeat pr 96.2 0.0014 3E-08 75.2 0.6 109 520-628 187-306 (482)
244 TIGR03346 chaperone_ClpB ATP-d 96.2 0.015 3.2E-07 70.8 9.3 46 153-198 565-619 (852)
245 PF07728 AAA_5: AAA domain (dy 96.2 0.0047 1E-07 57.1 4.0 42 177-224 2-43 (139)
246 TIGR02639 ClpA ATP-dependent C 96.2 0.0075 1.6E-07 72.1 6.5 46 153-198 454-508 (731)
247 KOG1969 DNA replication checkp 96.2 0.01 2.2E-07 66.7 6.8 74 172-268 324-399 (877)
248 PRK04132 replication factor C 96.2 0.063 1.4E-06 63.8 13.7 141 182-344 574-729 (846)
249 cd00983 recA RecA is a bacter 96.1 0.015 3.2E-07 61.2 7.4 87 173-267 54-144 (325)
250 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.024 5.1E-07 57.9 8.9 93 173-267 18-126 (235)
251 PF10443 RNA12: RNA12 protein; 96.1 0.31 6.6E-06 52.7 17.1 198 158-363 1-296 (431)
252 cd00544 CobU Adenosylcobinamid 96.1 0.0044 9.6E-08 59.0 3.1 126 177-316 2-146 (169)
253 PRK15455 PrkA family serine pr 96.1 0.0059 1.3E-07 67.9 4.4 45 154-198 77-127 (644)
254 CHL00095 clpC Clp protease ATP 96.0 0.011 2.4E-07 71.7 6.9 46 153-198 509-563 (821)
255 PRK09354 recA recombinase A; P 96.0 0.019 4E-07 61.0 7.8 87 173-267 59-149 (349)
256 PF00560 LRR_1: Leucine Rich R 96.0 0.0027 5.9E-08 37.3 0.9 19 571-589 2-20 (22)
257 KOG2739 Leucine-rich acidic nu 96.0 0.0018 3.8E-08 64.0 0.0 84 542-629 40-128 (260)
258 COG1618 Predicted nucleotide k 96.0 0.0066 1.4E-07 55.3 3.6 24 175-198 6-29 (179)
259 cd01120 RecA-like_NTPases RecA 96.0 0.014 2.9E-07 55.6 6.2 40 176-218 1-40 (165)
260 TIGR03345 VI_ClpV1 type VI sec 96.0 0.012 2.5E-07 71.2 6.8 46 153-198 566-620 (852)
261 PRK06964 DNA polymerase III su 96.0 0.21 4.6E-06 53.3 15.4 81 255-346 131-225 (342)
262 COG1484 DnaC DNA replication p 95.9 0.024 5.2E-07 58.1 8.0 75 173-267 104-178 (254)
263 PRK14722 flhF flagellar biosyn 95.9 0.032 7E-07 59.9 9.1 88 174-266 137-225 (374)
264 cd03115 SRP The signal recogni 95.9 0.026 5.6E-07 54.5 7.6 23 176-198 2-24 (173)
265 PRK06547 hypothetical protein; 95.9 0.0097 2.1E-07 57.0 4.5 35 164-198 5-39 (172)
266 KOG1947 Leucine rich repeat pr 95.9 0.0022 4.7E-08 73.6 0.1 87 541-627 184-279 (482)
267 COG2812 DnaX DNA polymerase II 95.9 0.042 9.1E-07 61.2 9.9 177 153-340 16-214 (515)
268 PF14532 Sigma54_activ_2: Sigm 95.9 0.012 2.5E-07 54.4 4.8 43 156-198 1-45 (138)
269 PRK05800 cobU adenosylcobinami 95.9 0.0036 7.7E-08 59.8 1.4 129 175-315 2-145 (170)
270 TIGR01425 SRP54_euk signal rec 95.8 0.21 4.5E-06 54.8 14.9 26 173-198 99-124 (429)
271 PF00485 PRK: Phosphoribulokin 95.8 0.04 8.6E-07 54.3 8.7 23 176-198 1-23 (194)
272 COG1223 Predicted ATPase (AAA+ 95.8 0.15 3.3E-06 50.4 12.1 160 153-340 121-319 (368)
273 PF08423 Rad51: Rad51; InterP 95.8 0.032 6.8E-07 57.4 8.1 93 174-267 38-144 (256)
274 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.033 7.2E-07 52.0 7.5 117 175-295 3-139 (159)
275 KOG2228 Origin recognition com 95.8 0.085 1.8E-06 54.2 10.8 138 154-294 25-182 (408)
276 COG5238 RNA1 Ran GTPase-activa 95.8 0.014 3E-07 57.8 5.0 88 520-608 29-135 (388)
277 KOG0743 AAA+-type ATPase [Post 95.7 0.24 5.3E-06 53.3 14.5 23 176-198 237-259 (457)
278 cd01131 PilT Pilus retraction 95.7 0.013 2.8E-07 57.9 4.9 107 175-293 2-108 (198)
279 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.059 1.3E-06 54.9 9.9 48 173-225 20-67 (237)
280 PTZ00301 uridine kinase; Provi 95.7 0.014 3.1E-07 57.7 4.9 25 174-198 3-27 (210)
281 PRK07667 uridine kinase; Provi 95.7 0.018 3.9E-07 56.6 5.6 37 162-198 3-41 (193)
282 COG0541 Ffh Signal recognition 95.7 0.33 7.2E-06 52.1 15.0 59 173-235 99-159 (451)
283 PF13238 AAA_18: AAA domain; P 95.7 0.0071 1.5E-07 55.0 2.5 22 177-198 1-22 (129)
284 TIGR03499 FlhF flagellar biosy 95.7 0.044 9.6E-07 57.3 8.7 88 173-265 193-281 (282)
285 PRK11034 clpA ATP-dependent Cl 95.6 0.014 3E-07 69.1 5.4 46 153-198 458-512 (758)
286 PHA00729 NTP-binding motif con 95.6 0.013 2.7E-07 58.0 4.2 35 164-198 7-41 (226)
287 KOG0733 Nuclear AAA ATPase (VC 95.6 0.07 1.5E-06 59.0 10.1 141 175-340 546-718 (802)
288 COG1875 NYN ribonuclease and A 95.6 0.018 3.9E-07 59.7 5.4 39 157-195 228-266 (436)
289 KOG0735 AAA+-type ATPase [Post 95.6 0.024 5.3E-07 63.5 6.7 73 174-267 431-505 (952)
290 COG1102 Cmk Cytidylate kinase 95.6 0.027 5.9E-07 51.5 5.8 45 176-234 2-46 (179)
291 PRK08972 fliI flagellum-specif 95.6 0.041 9E-07 60.0 8.4 90 173-267 161-263 (444)
292 TIGR02238 recomb_DMC1 meiotic 95.6 0.042 9.1E-07 58.1 8.3 94 173-267 95-202 (313)
293 KOG0731 AAA+-type ATPase conta 95.6 0.11 2.5E-06 59.9 12.1 164 153-343 311-521 (774)
294 cd01121 Sms Sms (bacterial rad 95.6 0.035 7.6E-07 60.1 7.8 87 174-267 82-169 (372)
295 PRK09270 nucleoside triphospha 95.5 0.015 3.2E-07 59.0 4.5 27 172-198 31-57 (229)
296 PRK11889 flhF flagellar biosyn 95.5 0.062 1.3E-06 57.5 9.2 87 173-266 240-330 (436)
297 PRK04301 radA DNA repair and r 95.5 0.058 1.3E-06 57.7 9.1 58 173-232 101-162 (317)
298 KOG0730 AAA+-type ATPase [Post 95.5 0.13 2.7E-06 57.8 11.5 48 155-205 436-496 (693)
299 PRK06067 flagellar accessory p 95.5 0.061 1.3E-06 54.8 8.8 88 173-266 24-130 (234)
300 PRK08233 hypothetical protein; 95.4 0.011 2.5E-07 57.5 3.2 25 174-198 3-27 (182)
301 cd02019 NK Nucleoside/nucleoti 95.4 0.011 2.3E-07 47.0 2.4 23 176-198 1-23 (69)
302 COG4608 AppF ABC-type oligopep 95.4 0.07 1.5E-06 53.7 8.6 93 172-268 37-139 (268)
303 cd01135 V_A-ATPase_B V/A-type 95.4 0.073 1.6E-06 54.3 8.7 95 174-268 69-178 (276)
304 PRK05480 uridine/cytidine kina 95.4 0.013 2.8E-07 58.6 3.4 27 172-198 4-30 (209)
305 cd03214 ABC_Iron-Siderophores_ 95.4 0.043 9.4E-07 53.3 7.0 118 173-295 24-159 (180)
306 PF13604 AAA_30: AAA domain; P 95.4 0.035 7.7E-07 54.6 6.4 34 165-198 9-42 (196)
307 KOG0744 AAA+-type ATPase [Post 95.3 0.042 9.1E-07 55.9 6.7 81 174-267 177-261 (423)
308 PRK10463 hydrogenase nickel in 95.3 0.045 9.7E-07 56.4 7.2 36 163-198 93-128 (290)
309 PF00154 RecA: recA bacterial 95.3 0.086 1.9E-06 55.4 9.3 88 173-268 52-143 (322)
310 PF13306 LRR_5: Leucine rich r 95.3 0.046 1E-06 49.6 6.7 99 520-625 11-111 (129)
311 PF13306 LRR_5: Leucine rich r 95.3 0.036 7.8E-07 50.3 6.0 93 520-619 34-128 (129)
312 TIGR00235 udk uridine kinase. 95.3 0.013 2.9E-07 58.3 3.3 27 172-198 4-30 (207)
313 PF07693 KAP_NTPase: KAP famil 95.3 0.27 5.8E-06 53.0 13.7 40 159-198 2-44 (325)
314 cd03247 ABCC_cytochrome_bd The 95.3 0.041 8.9E-07 53.3 6.5 26 173-198 27-52 (178)
315 KOG0738 AAA+-type ATPase [Post 95.3 0.2 4.3E-06 52.6 11.4 25 174-198 245-269 (491)
316 PRK12597 F0F1 ATP synthase sub 95.3 0.053 1.1E-06 59.9 7.9 93 173-267 142-248 (461)
317 COG0468 RecA RecA/RadA recombi 95.3 0.064 1.4E-06 55.1 8.0 92 172-267 58-152 (279)
318 KOG0728 26S proteasome regulat 95.2 0.3 6.4E-06 47.9 11.8 55 154-216 147-215 (404)
319 TIGR03498 FliI_clade3 flagella 95.2 0.056 1.2E-06 59.2 7.9 91 173-267 139-241 (418)
320 PRK06002 fliI flagellum-specif 95.2 0.071 1.5E-06 58.5 8.6 91 173-267 164-265 (450)
321 PRK13531 regulatory ATPase Rav 95.2 0.048 1E-06 60.1 7.3 43 154-198 21-63 (498)
322 TIGR02858 spore_III_AA stage I 95.2 0.096 2.1E-06 54.0 9.1 124 162-296 98-231 (270)
323 PRK12726 flagellar biosynthesi 95.1 0.18 4E-06 53.8 11.2 88 173-266 205-295 (407)
324 PRK08699 DNA polymerase III su 95.1 0.23 5E-06 52.9 12.2 25 174-198 21-45 (325)
325 TIGR00554 panK_bact pantothena 95.1 0.099 2.2E-06 54.4 9.1 27 172-198 60-86 (290)
326 PRK04328 hypothetical protein; 95.1 0.061 1.3E-06 55.2 7.6 41 173-216 22-62 (249)
327 KOG2123 Uncharacterized conser 95.1 0.0028 6.1E-08 62.7 -2.2 96 500-598 19-123 (388)
328 KOG2035 Replication factor C, 95.1 0.52 1.1E-05 47.3 13.3 198 154-369 14-261 (351)
329 cd01124 KaiC KaiC is a circadi 95.1 0.078 1.7E-06 51.8 7.9 45 176-225 1-45 (187)
330 cd03238 ABC_UvrA The excision 95.1 0.052 1.1E-06 52.2 6.4 113 173-295 20-150 (176)
331 PF13671 AAA_33: AAA domain; P 95.1 0.016 3.4E-07 53.9 2.8 23 176-198 1-23 (143)
332 TIGR02236 recomb_radA DNA repa 95.1 0.11 2.3E-06 55.6 9.5 59 173-232 94-155 (310)
333 TIGR00064 ftsY signal recognit 95.0 0.1 2.2E-06 54.2 8.9 90 173-266 71-164 (272)
334 cd03216 ABC_Carb_Monos_I This 95.0 0.029 6.3E-07 53.4 4.6 113 173-295 25-143 (163)
335 COG4088 Predicted nucleotide k 95.0 0.019 4E-07 54.6 2.9 24 175-198 2-25 (261)
336 PRK06762 hypothetical protein; 95.0 0.017 3.8E-07 55.2 2.9 24 175-198 3-26 (166)
337 cd02025 PanK Pantothenate kina 95.0 0.077 1.7E-06 53.2 7.6 23 176-198 1-23 (220)
338 PF01583 APS_kinase: Adenylyls 95.0 0.023 5E-07 52.8 3.6 35 175-212 3-37 (156)
339 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.0 0.069 1.5E-06 49.6 6.9 26 173-198 25-50 (144)
340 PRK08149 ATP synthase SpaL; Va 95.0 0.099 2.2E-06 57.2 8.9 91 172-267 149-252 (428)
341 COG1121 ZnuC ABC-type Mn/Zn tr 95.0 0.084 1.8E-06 53.1 7.7 121 174-296 30-201 (254)
342 TIGR03881 KaiC_arch_4 KaiC dom 95.0 0.13 2.7E-06 52.3 9.4 41 173-216 19-59 (229)
343 PRK12723 flagellar biosynthesi 95.0 0.11 2.4E-06 56.4 9.3 88 174-266 174-264 (388)
344 cd03228 ABCC_MRP_Like The MRP 94.9 0.051 1.1E-06 52.3 6.1 27 172-198 26-52 (171)
345 PRK05922 type III secretion sy 94.9 0.097 2.1E-06 57.3 8.8 91 172-267 155-258 (434)
346 KOG0734 AAA+-type ATPase conta 94.9 0.073 1.6E-06 57.8 7.6 45 154-198 305-361 (752)
347 TIGR01360 aden_kin_iso1 adenyl 94.9 0.02 4.3E-07 56.2 3.1 26 173-198 2-27 (188)
348 PRK10733 hflB ATP-dependent me 94.9 0.075 1.6E-06 62.5 8.4 45 154-198 153-209 (644)
349 PF06745 KaiC: KaiC; InterPro 94.8 0.048 1.1E-06 55.2 5.9 90 173-267 18-126 (226)
350 COG1066 Sms Predicted ATP-depe 94.8 0.11 2.3E-06 55.2 8.3 86 174-267 93-179 (456)
351 PF07726 AAA_3: ATPase family 94.8 0.015 3.2E-07 51.6 1.7 27 177-206 2-28 (131)
352 COG0563 Adk Adenylate kinase a 94.8 0.029 6.3E-07 53.9 3.9 23 176-198 2-24 (178)
353 PRK03839 putative kinase; Prov 94.8 0.02 4.2E-07 55.7 2.8 23 176-198 2-24 (180)
354 PTZ00494 tuzin-like protein; P 94.8 1.1 2.3E-05 48.4 15.5 73 153-234 371-446 (664)
355 PRK12678 transcription termina 94.8 0.046 9.9E-07 60.8 5.8 101 165-267 406-514 (672)
356 PF03205 MobB: Molybdopterin g 94.8 0.039 8.5E-07 50.8 4.6 39 175-215 1-39 (140)
357 cd03223 ABCD_peroxisomal_ALDP 94.8 0.086 1.9E-06 50.4 7.1 113 173-294 26-148 (166)
358 PLN03186 DNA repair protein RA 94.8 0.12 2.7E-06 55.1 8.8 60 173-233 122-184 (342)
359 cd01129 PulE-GspE PulE/GspE Th 94.7 0.097 2.1E-06 54.1 7.9 104 156-272 62-165 (264)
360 PTZ00088 adenylate kinase 1; P 94.7 0.023 4.9E-07 57.1 3.1 22 177-198 9-30 (229)
361 COG2884 FtsE Predicted ATPase 94.7 0.094 2E-06 49.5 6.8 26 173-198 27-52 (223)
362 PF00006 ATP-synt_ab: ATP synt 94.7 0.12 2.6E-06 51.2 8.2 89 174-267 15-116 (215)
363 TIGR00150 HI0065_YjeE ATPase, 94.7 0.044 9.5E-07 49.5 4.6 38 161-198 7-46 (133)
364 TIGR03305 alt_F1F0_F1_bet alte 94.7 0.093 2E-06 57.7 7.9 93 173-267 137-243 (449)
365 PRK08927 fliI flagellum-specif 94.7 0.1 2.2E-06 57.2 8.1 91 172-267 156-259 (442)
366 PRK09280 F0F1 ATP synthase sub 94.7 0.11 2.4E-06 57.3 8.3 93 173-267 143-249 (463)
367 PF13481 AAA_25: AAA domain; P 94.6 0.042 9.2E-07 54.1 4.8 42 175-216 33-81 (193)
368 PRK14974 cell division protein 94.6 0.21 4.6E-06 53.2 10.2 91 173-267 139-233 (336)
369 TIGR00390 hslU ATP-dependent p 94.6 0.063 1.4E-06 58.0 6.2 46 153-198 12-71 (441)
370 cd01136 ATPase_flagellum-secre 94.6 0.17 3.6E-06 53.5 9.3 91 172-267 67-170 (326)
371 PRK06217 hypothetical protein; 94.6 0.046 1E-06 53.2 4.9 23 176-198 3-25 (183)
372 COG1428 Deoxynucleoside kinase 94.6 0.051 1.1E-06 52.4 4.9 49 174-228 4-52 (216)
373 PRK05342 clpX ATP-dependent pr 94.6 0.08 1.7E-06 58.2 7.2 46 153-198 71-132 (412)
374 PLN03187 meiotic recombination 94.6 0.21 4.5E-06 53.4 10.0 94 173-267 125-232 (344)
375 PRK04040 adenylate kinase; Pro 94.6 0.025 5.4E-07 55.2 2.8 24 175-198 3-26 (188)
376 PTZ00185 ATPase alpha subunit; 94.6 0.15 3.3E-06 56.2 9.0 94 174-267 189-300 (574)
377 TIGR02239 recomb_RAD51 DNA rep 94.5 0.17 3.6E-06 53.8 9.2 60 173-233 95-157 (316)
378 PRK06936 type III secretion sy 94.5 0.13 2.8E-06 56.4 8.5 91 172-267 160-263 (439)
379 PF00560 LRR_1: Leucine Rich R 94.5 0.017 3.7E-07 33.9 1.0 21 546-567 1-21 (22)
380 PRK12724 flagellar biosynthesi 94.5 0.096 2.1E-06 56.8 7.4 25 174-198 223-247 (432)
381 PRK14527 adenylate kinase; Pro 94.5 0.044 9.6E-07 53.8 4.6 26 173-198 5-30 (191)
382 PRK00625 shikimate kinase; Pro 94.5 0.026 5.6E-07 54.1 2.8 23 176-198 2-24 (173)
383 cd02024 NRK1 Nicotinamide ribo 94.5 0.022 4.8E-07 55.1 2.3 23 176-198 1-23 (187)
384 cd03230 ABC_DR_subfamily_A Thi 94.5 0.052 1.1E-06 52.3 4.8 26 173-198 25-50 (173)
385 PTZ00035 Rad51 protein; Provis 94.5 0.31 6.8E-06 52.2 11.1 94 173-267 117-224 (337)
386 PRK05703 flhF flagellar biosyn 94.5 0.14 3.1E-06 56.6 8.8 86 174-265 221-308 (424)
387 cd02023 UMPK Uridine monophosp 94.4 0.023 5E-07 56.2 2.4 23 176-198 1-23 (198)
388 cd03222 ABC_RNaseL_inhibitor T 94.4 0.14 3E-06 49.3 7.6 27 172-198 23-49 (177)
389 TIGR01040 V-ATPase_V1_B V-type 94.4 0.13 2.8E-06 56.4 8.1 95 173-267 140-258 (466)
390 COG3640 CooC CO dehydrogenase 94.4 0.061 1.3E-06 52.5 5.0 43 176-220 2-44 (255)
391 cd01132 F1_ATPase_alpha F1 ATP 94.4 0.12 2.6E-06 52.8 7.3 90 174-268 69-173 (274)
392 PRK11823 DNA repair protein Ra 94.4 0.14 3E-06 57.2 8.6 85 173-267 79-167 (446)
393 PF00910 RNA_helicase: RNA hel 94.4 0.024 5.3E-07 49.5 2.1 22 177-198 1-22 (107)
394 cd02028 UMPK_like Uridine mono 94.4 0.03 6.6E-07 54.2 2.9 23 176-198 1-23 (179)
395 cd03246 ABCC_Protease_Secretio 94.4 0.099 2.1E-06 50.4 6.5 26 173-198 27-52 (173)
396 cd02027 APSK Adenosine 5'-phos 94.4 0.16 3.5E-06 47.4 7.8 23 176-198 1-23 (149)
397 COG1124 DppF ABC-type dipeptid 94.3 0.05 1.1E-06 53.6 4.2 27 172-198 31-57 (252)
398 TIGR01039 atpD ATP synthase, F 94.3 0.15 3.3E-06 56.0 8.4 93 173-267 142-248 (461)
399 PF08298 AAA_PrkA: PrkA AAA do 94.3 0.051 1.1E-06 57.0 4.6 46 153-198 61-112 (358)
400 TIGR01359 UMP_CMP_kin_fam UMP- 94.3 0.026 5.6E-07 55.1 2.3 23 176-198 1-23 (183)
401 PRK08533 flagellar accessory p 94.3 0.23 5E-06 50.2 9.2 49 173-226 23-71 (230)
402 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.21 4.5E-06 51.6 9.0 41 173-216 35-75 (259)
403 TIGR02902 spore_lonB ATP-depen 94.3 0.061 1.3E-06 61.6 5.6 45 153-197 65-109 (531)
404 PRK05973 replicative DNA helic 94.2 0.24 5.2E-06 49.8 9.1 49 173-226 63-111 (237)
405 PRK15453 phosphoribulokinase; 94.2 0.17 3.6E-06 51.8 8.0 27 172-198 3-29 (290)
406 KOG3347 Predicted nucleotide k 94.2 0.051 1.1E-06 48.8 3.7 68 175-255 8-75 (176)
407 PF12775 AAA_7: P-loop contain 94.2 0.058 1.3E-06 55.9 4.8 89 163-267 23-111 (272)
408 PRK05688 fliI flagellum-specif 94.2 0.16 3.5E-06 55.9 8.4 91 172-267 166-269 (451)
409 PRK00131 aroK shikimate kinase 94.2 0.036 7.7E-07 53.5 3.1 25 174-198 4-28 (175)
410 PRK13765 ATP-dependent proteas 94.2 0.076 1.6E-06 61.5 6.2 75 153-232 31-105 (637)
411 PRK05439 pantothenate kinase; 94.2 0.25 5.5E-06 51.8 9.5 27 172-198 84-110 (311)
412 PRK14721 flhF flagellar biosyn 94.2 0.24 5.2E-06 54.3 9.6 86 174-265 191-278 (420)
413 COG1703 ArgK Putative periplas 94.1 0.055 1.2E-06 54.9 4.1 62 163-225 38-101 (323)
414 PF03308 ArgK: ArgK protein; 94.1 0.052 1.1E-06 54.3 3.9 62 161-223 14-77 (266)
415 PRK05201 hslU ATP-dependent pr 94.1 0.096 2.1E-06 56.6 6.2 75 153-230 15-107 (443)
416 TIGR02322 phosphon_PhnN phosph 94.1 0.038 8.2E-07 53.7 2.9 24 175-198 2-25 (179)
417 PRK06851 hypothetical protein; 94.1 0.53 1.1E-05 50.6 11.7 54 157-216 201-254 (367)
418 TIGR00416 sms DNA repair prote 94.0 0.18 3.8E-06 56.5 8.5 85 173-267 93-181 (454)
419 cd00071 GMPK Guanosine monopho 94.0 0.04 8.7E-07 50.6 2.8 23 176-198 1-23 (137)
420 PRK10751 molybdopterin-guanine 94.0 0.045 9.8E-07 52.0 3.2 26 173-198 5-30 (173)
421 KOG0473 Leucine-rich repeat pr 94.0 0.0035 7.6E-08 60.4 -4.2 82 520-603 41-122 (326)
422 cd00267 ABC_ATPase ABC (ATP-bi 94.0 0.11 2.4E-06 49.1 6.0 112 173-295 24-141 (157)
423 PF00625 Guanylate_kin: Guanyl 94.0 0.063 1.4E-06 52.3 4.3 37 174-213 2-38 (183)
424 TIGR03575 selen_PSTK_euk L-ser 94.0 0.15 3.2E-06 54.2 7.3 22 177-198 2-23 (340)
425 COG1936 Predicted nucleotide k 94.0 0.039 8.5E-07 51.2 2.6 20 176-195 2-21 (180)
426 PRK00889 adenylylsulfate kinas 94.0 0.047 1E-06 52.8 3.4 26 173-198 3-28 (175)
427 PRK09519 recA DNA recombinatio 93.9 0.17 3.8E-06 59.4 8.4 87 173-267 59-149 (790)
428 PF13504 LRR_7: Leucine rich r 93.9 0.031 6.7E-07 30.4 1.2 16 570-585 2-17 (17)
429 PF08433 KTI12: Chromatin asso 93.9 0.089 1.9E-06 54.3 5.5 24 175-198 2-25 (270)
430 CHL00059 atpA ATP synthase CF1 93.9 0.18 4E-06 55.6 8.1 90 173-267 140-244 (485)
431 PRK09099 type III secretion sy 93.9 0.2 4.4E-06 55.1 8.5 92 172-267 161-264 (441)
432 cd00227 CPT Chloramphenicol (C 93.9 0.042 9E-07 53.1 2.9 24 175-198 3-26 (175)
433 TIGR02655 circ_KaiC circadian 93.9 0.3 6.6E-06 55.4 10.2 89 172-266 261-363 (484)
434 COG0003 ArsA Predicted ATPase 93.9 0.081 1.8E-06 55.7 5.1 49 174-225 2-50 (322)
435 cd02029 PRK_like Phosphoribulo 93.9 0.2 4.4E-06 50.7 7.6 78 176-256 1-84 (277)
436 PRK06995 flhF flagellar biosyn 93.9 0.2 4.4E-06 55.8 8.4 87 174-266 256-344 (484)
437 cd02020 CMPK Cytidine monophos 93.8 0.037 7.9E-07 51.6 2.3 23 176-198 1-23 (147)
438 PRK13947 shikimate kinase; Pro 93.8 0.042 9E-07 52.9 2.7 23 176-198 3-25 (171)
439 TIGR03263 guanyl_kin guanylate 93.8 0.045 9.7E-07 53.2 3.0 24 175-198 2-25 (180)
440 PF03193 DUF258: Protein of un 93.8 0.075 1.6E-06 49.7 4.2 36 160-198 24-59 (161)
441 cd02021 GntK Gluconate kinase 93.8 0.038 8.3E-07 51.8 2.4 23 176-198 1-23 (150)
442 TIGR00073 hypB hydrogenase acc 93.8 0.054 1.2E-06 54.0 3.5 32 167-198 15-46 (207)
443 PF00158 Sigma54_activat: Sigm 93.8 0.075 1.6E-06 50.7 4.3 44 155-198 1-46 (168)
444 PRK06793 fliI flagellum-specif 93.7 0.25 5.4E-06 54.2 8.6 93 172-268 154-258 (432)
445 COG0467 RAD55 RecA-superfamily 93.7 0.075 1.6E-06 55.1 4.5 42 172-216 21-62 (260)
446 TIGR00764 lon_rel lon-related 93.7 0.16 3.5E-06 59.0 7.6 77 151-232 16-92 (608)
447 TIGR00382 clpX endopeptidase C 93.6 0.2 4.3E-06 54.9 7.8 46 153-198 77-140 (413)
448 PRK13949 shikimate kinase; Pro 93.6 0.05 1.1E-06 52.0 2.9 23 176-198 3-25 (169)
449 TIGR02030 BchI-ChlI magnesium 93.6 0.092 2E-06 56.0 5.1 46 153-198 4-49 (337)
450 PRK15429 formate hydrogenlyase 93.6 0.16 3.4E-06 60.7 7.7 46 153-198 376-423 (686)
451 COG0464 SpoVK ATPases of the A 93.6 0.11 2.5E-06 59.4 6.2 90 155-267 244-346 (494)
452 PRK14723 flhF flagellar biosyn 93.6 0.41 9E-06 56.2 10.6 87 174-266 185-273 (767)
453 PRK00279 adk adenylate kinase; 93.6 0.075 1.6E-06 53.3 4.2 23 176-198 2-24 (215)
454 KOG0729 26S proteasome regulat 93.6 0.087 1.9E-06 51.9 4.3 42 157-198 181-235 (435)
455 PRK00300 gmk guanylate kinase; 93.5 0.058 1.3E-06 53.7 3.3 26 173-198 4-29 (205)
456 PRK07132 DNA polymerase III su 93.5 2.2 4.8E-05 44.8 15.0 157 162-345 5-184 (299)
457 TIGR00708 cobA cob(I)alamin ad 93.5 0.24 5.1E-06 47.0 7.0 118 174-295 5-141 (173)
458 TIGR03496 FliI_clade1 flagella 93.5 0.25 5.4E-06 54.2 8.3 91 172-267 135-238 (411)
459 PRK14530 adenylate kinase; Pro 93.5 0.052 1.1E-06 54.5 2.8 24 175-198 4-27 (215)
460 TIGR03324 alt_F1F0_F1_al alter 93.5 0.23 4.9E-06 55.2 7.9 90 173-267 161-265 (497)
461 cd03281 ABC_MSH5_euk MutS5 hom 93.5 0.055 1.2E-06 54.0 2.9 23 174-196 29-51 (213)
462 PRK07721 fliI flagellum-specif 93.5 0.25 5.4E-06 54.7 8.2 92 172-267 156-259 (438)
463 TIGR01041 ATP_syn_B_arch ATP s 93.5 0.25 5.5E-06 54.7 8.3 93 174-267 141-249 (458)
464 PRK12339 2-phosphoglycerate ki 93.4 0.064 1.4E-06 52.6 3.2 25 174-198 3-27 (197)
465 PF08477 Miro: Miro-like prote 93.4 0.061 1.3E-06 48.0 2.8 22 177-198 2-23 (119)
466 PRK06820 type III secretion sy 93.4 0.23 5E-06 54.7 7.7 90 173-267 162-264 (440)
467 KOG0652 26S proteasome regulat 93.4 0.53 1.1E-05 46.5 9.2 52 147-198 162-229 (424)
468 cd01672 TMPK Thymidine monopho 93.3 0.14 3.1E-06 50.5 5.8 23 176-198 2-24 (200)
469 PRK10416 signal recognition pa 93.3 0.39 8.4E-06 51.0 9.1 26 173-198 113-138 (318)
470 cd01122 GP4d_helicase GP4d_hel 93.3 0.38 8.3E-06 50.2 9.2 52 174-229 30-81 (271)
471 TIGR02546 III_secr_ATP type II 93.3 0.39 8.6E-06 53.0 9.5 91 172-267 143-246 (422)
472 PF06309 Torsin: Torsin; Inte 93.3 0.24 5.1E-06 43.9 6.1 45 154-198 26-77 (127)
473 cd00820 PEPCK_HprK Phosphoenol 93.3 0.071 1.5E-06 46.0 2.8 23 173-195 14-36 (107)
474 CHL00060 atpB ATP synthase CF1 93.2 0.31 6.7E-06 54.0 8.4 93 173-267 160-273 (494)
475 cd00464 SK Shikimate kinase (S 93.2 0.057 1.2E-06 50.8 2.6 22 177-198 2-23 (154)
476 TIGR00176 mobB molybdopterin-g 93.2 0.082 1.8E-06 49.6 3.5 23 176-198 1-23 (155)
477 CHL00081 chlI Mg-protoporyphyr 93.2 0.09 2E-06 56.1 4.2 46 153-198 17-62 (350)
478 PF02374 ArsA_ATPase: Anion-tr 93.2 0.089 1.9E-06 55.6 4.1 46 175-223 2-47 (305)
479 COG1419 FlhF Flagellar GTP-bin 93.2 0.67 1.4E-05 49.8 10.5 73 173-250 202-277 (407)
480 TIGR01313 therm_gnt_kin carboh 93.2 0.051 1.1E-06 51.8 2.2 22 177-198 1-22 (163)
481 COG2019 AdkA Archaeal adenylat 93.2 0.068 1.5E-06 49.2 2.7 25 174-198 4-28 (189)
482 PRK10078 ribose 1,5-bisphospho 93.2 0.065 1.4E-06 52.3 2.9 24 175-198 3-26 (186)
483 PRK03846 adenylylsulfate kinas 93.1 0.077 1.7E-06 52.4 3.4 27 172-198 22-48 (198)
484 PRK13407 bchI magnesium chelat 93.1 0.1 2.2E-06 55.6 4.4 46 153-198 8-53 (334)
485 PRK07594 type III secretion sy 93.1 0.23 4.9E-06 54.6 7.2 91 172-267 153-256 (433)
486 TIGR01351 adk adenylate kinase 93.1 0.091 2E-06 52.5 3.9 22 177-198 2-23 (210)
487 PLN02348 phosphoribulokinase 93.1 0.1 2.3E-06 55.9 4.4 27 172-198 47-73 (395)
488 PF03215 Rad17: Rad17 cell cyc 93.1 0.11 2.3E-06 58.9 4.8 55 153-212 19-78 (519)
489 PRK05057 aroK shikimate kinase 93.1 0.076 1.7E-06 51.0 3.2 25 174-198 4-28 (172)
490 PRK13948 shikimate kinase; Pro 93.1 0.081 1.8E-06 51.1 3.3 26 173-198 9-34 (182)
491 COG0542 clpA ATP-binding subun 93.0 0.086 1.9E-06 61.4 4.0 98 153-267 170-273 (786)
492 TIGR01026 fliI_yscN ATPase Fli 93.0 0.28 6.1E-06 54.3 7.9 91 172-267 161-264 (440)
493 PRK13975 thymidylate kinase; P 93.0 0.071 1.5E-06 52.6 2.9 24 175-198 3-26 (196)
494 PRK05986 cob(I)alamin adenolsy 93.0 0.32 7E-06 46.8 7.2 119 173-295 21-159 (191)
495 KOG1532 GTPase XAB1, interacts 93.0 0.086 1.9E-06 52.4 3.3 25 174-198 19-43 (366)
496 cd01878 HflX HflX subfamily. 93.0 0.21 4.5E-06 49.6 6.3 26 173-198 40-65 (204)
497 PRK07960 fliI flagellum-specif 93.0 0.24 5.1E-06 54.4 7.0 91 172-267 173-276 (455)
498 PF03266 NTPase_1: NTPase; In 93.0 0.093 2E-06 50.0 3.5 22 177-198 2-23 (168)
499 PRK13946 shikimate kinase; Pro 92.9 0.078 1.7E-06 51.6 3.1 24 175-198 11-34 (184)
500 COG0465 HflB ATP-dependent Zn 92.9 0.64 1.4E-05 52.8 10.4 46 153-198 150-207 (596)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-98 Score=874.23 Aligned_cols=828 Identities=36% Similarity=0.564 Sum_probs=677.6
Q ss_pred chhh-hhhHHHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Q 038405 6 PILD-IFTRLWDCSAAKSSYIRHLEDNLKSLSEKKSQIEDLNEDIKRRVETEEQQQQRKRKKVVEGWLNAVESEIKEVDG 84 (863)
Q Consensus 6 ~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~~wl~~~~~~~~~~~d 84 (863)
+.++ .++++++.+.+++..+.++++++..+++++..|+.++.++++ + + .....+..|...+++++|+++|
T Consensus 3 ~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a-------~-~-~~~~~~~~~~e~~~~~~~~~e~ 73 (889)
T KOG4658|consen 3 ACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDA-------K-R-DDLERRVNWEEDVGDLVYLAED 73 (889)
T ss_pred eEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-------h-c-chHHHHHHHHHHHHHHHHHHHH
Confidence 4466 667888899999999999999999999999999999766554 3 2 2345678999999999999999
Q ss_pred HHHhhhhhhhh----------------cccCCccCCCccccchhhHHHHHHHHHHHHHHHhCCccccccccc-CCCCCCc
Q 038405 85 ILQKGCQEIEK----------------KCLGGCCTRNCYASYKIGKTVTEEISKVTLLRLEGQDFESVYFTY-KLPRPPV 147 (863)
Q Consensus 85 ~ld~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~ 147 (863)
+++.|...... -|..+.|.++...-|.+++++..++++++.+..++ .|..+ +. ..+....
T Consensus 74 ~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~-~~~~~--~~~~~~~~~~ 150 (889)
T KOG4658|consen 74 IIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKG-VFEVV--GESLDPREKV 150 (889)
T ss_pred HHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhcccc-ceecc--cccccchhhc
Confidence 99998654321 13335556666777788899999999998888766 56555 32 1222223
Q ss_pred cccCCccc--cchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 038405 148 DGMATEKT--VGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 148 ~~~~~~~~--vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 225 (863)
..+|.... ||.+..++++++.|.+++..++||+||||+||||||++++|+...++++||.++||+||++++...++++
T Consensus 151 e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~ 230 (889)
T KOG4658|consen 151 ETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQT 230 (889)
T ss_pred ccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHH
Confidence 33333222 9999999999999988888999999999999999999999999448999999999999999999999999
Q ss_pred HHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccccccccccccCCCCCCCeEEEEeecchhhh--------
Q 038405 226 IRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVC-------- 297 (863)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~~v~-------- 297 (863)
|++.++.....+.....++++..|.+.|++|||+|||||||+..+|+.++.++|...+||||++|||++.||
T Consensus 231 Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~ 310 (889)
T KOG4658|consen 231 ILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY 310 (889)
T ss_pred HHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc
Confidence 999999876655566668899999999999999999999999999999999999999999999999999999
Q ss_pred ---cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHhCCCChhhHHHHHHHHhcC-CCcc
Q 038405 298 ---VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMSSRRSPREWQYVIDELQRN-PSRF 373 (863)
Q Consensus 298 ---l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~-~~~~ 373 (863)
+++|+++|||+||+++++......++.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++.+.+.+. ..+.
T Consensus 311 ~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~ 390 (889)
T KOG4658|consen 311 PIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF 390 (889)
T ss_pred cccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC
Confidence 889999999999999999886667777999999999999999999999999999999999999999999887 6666
Q ss_pred CCCCccccchhhcccCCCChhhHhHHhhhhcCCCCCCccchHHHHHHHHhcCCCCCccchhHHhhhHHHHHHHHHHhccc
Q 038405 374 AGMGNLVFPILRFSYDNLTDDTLKTCFLYCSLFPEENNIRKDELIDLWIGEGFLSDFRSITTARNQGEYIIGSLKLACLL 453 (863)
Q Consensus 374 ~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll 453 (863)
+++.+.+++++++||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+...+..+++.|++|+.+|++++|+
T Consensus 391 ~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll 469 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLL 469 (889)
T ss_pred CchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHH
Confidence 67778999999999999996 59999999999999999999999999999999998767889999999999999999999
Q ss_pred ccCC--CCCCeEEechHHHHHHHHhhh-----cCCcEEEecCCCC-CCCCccccccceEEEeccCCccccCCCC-CCCcc
Q 038405 454 ESGE--YSEDFVKMHDVVRDMALWLAS-----NESKILVQRSSDC-TNKSADSWREDFRLSLWGSSIEYLPETP-CPHLQ 524 (863)
Q Consensus 454 ~~~~--~~~~~~~mHdlv~d~~~~i~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~l~l~~~~~~~l~~~~-~~~Lr 524 (863)
.... ....+|+|||+|||||.++++ +++ .++..+... +.+....|..+|+++++++.+..++... +++|+
T Consensus 470 ~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~ 548 (889)
T KOG4658|consen 470 IEERDEGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLR 548 (889)
T ss_pred hhcccccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccc
Confidence 9876 346899999999999999998 455 555554333 5777888899999999999999988888 99999
Q ss_pred EEEeeccc--ccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEecCCC
Q 038405 525 TLLVRFTV--LEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLLDGM 602 (863)
Q Consensus 525 ~L~l~~~~--l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~ 602 (863)
+|.+.+|. +..++..+|..|+.|+||||++|..+..+|.+|++|.|||||+++++.|+.+|.++++|.+|.+|++..+
T Consensus 549 tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 549 TLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred eEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccc
Confidence 99999995 8889999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccccEE
Q 038405 603 RHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCIKRL 682 (863)
Q Consensus 603 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L 682 (863)
..+..+| ++...|++|++|.+.... .......+.+|..+. +|+.+.+...+...+..+.......+..+.+
T Consensus 629 ~~l~~~~-~i~~~L~~Lr~L~l~~s~-------~~~~~~~l~el~~Le-~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 629 GRLESIP-GILLELQSLRVLRLPRSA-------LSNDKLLLKELENLE-HLENLSITISSVLLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred ccccccc-chhhhcccccEEEeeccc-------cccchhhHHhhhccc-chhhheeecchhHhHhhhhhhHHHHHHhHhh
Confidence 8777775 447779999999998643 111344566666666 6666666655543334443333333444555
Q ss_pred EecccCCccc-ccccccCCcceeEeccCccccc--CCCCC-CCC-CCCCCCEEEEecCCCCCCCcccccCCCcceEeecc
Q 038405 683 TIMHNLDSHS-IDLRNMMHLETLNIVECSLERV--DPTFN-GWT-NFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVN 757 (863)
Q Consensus 683 ~l~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~--~~~~~-~~~-~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 757 (863)
.+.++..... ..+..+.+|+.|.+.+|.+.+. .+... ... .|+++..+.+.+|.....+.|....|+|+.|++.+
T Consensus 700 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 700 SIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVS 779 (889)
T ss_pred hhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEec
Confidence 5444333222 2378899999999999986543 22110 111 26788889999999999988888899999999999
Q ss_pred CcchhhhhcccCC-ccccccCccCccccee-cccccccccccccCccCCCCccEEeeccCCCCCCCCCCCCCCCC---cc
Q 038405 758 CQALSEIIESAGS-SEVAESHNYFAYLMVI-DLDSLPSLKRICHGTMPFPSLQNVSVTNCPNLRELPFNFDSAKN---SL 832 (863)
Q Consensus 758 ~~~l~~i~~~~~~-~~~~~~~~~~~~L~~L-~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~---~l 832 (863)
|..++.+++.... .........|.++..+ .+.+.+.+.++......+++|+.+.+..||++..+|........ ..
T Consensus 780 ~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~ 859 (889)
T KOG4658|consen 780 CRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEK 859 (889)
T ss_pred ccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccc
Confidence 9988887654311 0010112345666666 57888888888888888899999999999999999986543322 23
Q ss_pred eEEEchHhhhhcCcccchhhhhhh
Q 038405 833 VSIRGSAEWWEQLQWEDEATKHVF 856 (863)
Q Consensus 833 ~~i~~~~~~~~~l~w~~~~~~~~~ 856 (863)
.....+.+|.+.++|+++..+..+
T Consensus 860 ~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 860 LKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred eeecCCccceeeEEehhhhhhhhc
Confidence 444555689999999999988776
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.5e-63 Score=608.93 Aligned_cols=615 Identities=22% Similarity=0.301 Sum_probs=427.4
Q ss_pred ccccchhhHHHHHHHhhc--cCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEe---CCC-----------
Q 038405 153 EKTVGADSKLDEVWGCIE--DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAV---SKE----------- 216 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~---~~~----------- 216 (863)
+.+|||++.++++..+|. .+++++|+||||||+||||||+++|++. ...|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 579999999999999883 4678999999999999999999999987 678998888742 111
Q ss_pred CC-HHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccccccccccccCCCCCCCeEEEEeecchh
Q 038405 217 GN-LEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEE 295 (863)
Q Consensus 217 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~~ 295 (863)
++ ...++.+++..+..... .... ....+++.+++||+||||||||+..+|+.+.....+.++||+||||||++.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~----~~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD----IKIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC----cccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 11 12344444444322210 0011 124577889999999999999999999988877777789999999999998
Q ss_pred hh----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHhCCCChhhHHHHHHH
Q 038405 296 VC----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMSSRRSPREWQYVIDE 365 (863)
Q Consensus 296 v~----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~ 365 (863)
++ ++.++.++||+||+..||.... ..+++.+++++|+++|+|+|||++++|++|++ ++..+|+.++++
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~ 413 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPR 413 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 86 7889999999999999987642 33467899999999999999999999999998 588999999999
Q ss_pred HhcCCCccCCCCccccchhhcccCCCChhhHhHHhhhhcCCCCCCccchHHHHHHHHhcCCCCCccchhHHhhhHHHHHH
Q 038405 366 LQRNPSRFAGMGNLVFPILRFSYDNLTDDTLKTCFLYCSLFPEENNIRKDELIDLWIGEGFLSDFRSITTARNQGEYIIG 445 (863)
Q Consensus 366 l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~~ 445 (863)
++.... ..|.++|++||+.|+++..|.||+++|+||.+..++. +..|++.+..... ..++
T Consensus 414 L~~~~~------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~~~-----------~~l~ 473 (1153)
T PLN03210 414 LRNGLD------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLDVN-----------IGLK 473 (1153)
T ss_pred HHhCcc------HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCCch-----------hChH
Confidence 886432 4799999999999987458999999999999876643 6677777654321 2288
Q ss_pred HHHHhcccccCCCCCCeEEechHHHHHHHHhhhcCC------cEEEecCC----------------------CC-----C
Q 038405 446 SLKLACLLESGEYSEDFVKMHDVVRDMALWLASNES------KILVQRSS----------------------DC-----T 492 (863)
Q Consensus 446 ~L~~~~ll~~~~~~~~~~~mHdlv~d~~~~i~~~~~------~~~~~~~~----------------------~~-----~ 492 (863)
.|+++||++.. .+.+.|||++|+||+.+++++. .++..... .. .
T Consensus 474 ~L~~ksLi~~~---~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 474 NLVDKSLIHVR---EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred HHHhcCCEEEc---CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 99999999875 4579999999999999986431 22211100 00 0
Q ss_pred CCCccccc-------------------------------cceEEEeccCCccccCCCC-CCCccEEEeecccccccchhh
Q 038405 493 NKSADSWR-------------------------------EDFRLSLWGSSIEYLPETP-CPHLQTLLVRFTVLEIFPHRF 540 (863)
Q Consensus 493 ~~~~~~~~-------------------------------~~~~l~l~~~~~~~l~~~~-~~~Lr~L~l~~~~l~~l~~~~ 540 (863)
...+..+. +++.+.+.++.++.+|... +.+|+.|++.+|.+..++..
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~- 629 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG- 629 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-
Confidence 00011112 2444455555555555554 66777777777766666655
Q ss_pred hhcCCCccEEeccCCcCccccchhhhcccccceeeccCC-CccccchhhhcccCccEEecCCCCCccccchhhhcCCCCC
Q 038405 541 FESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNT-SIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSL 619 (863)
Q Consensus 541 ~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L 619 (863)
+..+++|++|+|+++..+..+|. ++.+++|++|+|++| .+..+|.+++++++|+.|++++|..+..+|.. + ++++|
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL 706 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSL 706 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCC
Confidence 46677777777777756667764 677777888888777 66777777777888888888877777777765 3 67778
Q ss_pred ceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhcc------------------ccccccccE
Q 038405 620 KVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFS------------------WKLCSCIKR 681 (863)
Q Consensus 620 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~------------------~~~~~~L~~ 681 (863)
++|++++|......+. ...+++.|....|.+..++..+ .+..+..+... ...+++|+.
T Consensus 707 ~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchh
Confidence 8887777643221111 1234444444444444433221 11111111110 112345666
Q ss_pred EEecccCCccccc--ccccCCcceeEeccCc-ccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeeccC
Q 038405 682 LTIMHNLDSHSID--LRNMMHLETLNIVECS-LERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNC 758 (863)
Q Consensus 682 L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 758 (863)
|++++|......+ ++++++|+.|++++|. +..++... .+++|+.|++++|..+..+|.+ .++|+.|+|++|
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n 856 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI----NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT 856 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC----CccccCEEECCCCCcccccccc--ccccCEeECCCC
Confidence 6666665443332 5666677777776664 44443321 4666777777776665554432 356666666665
Q ss_pred cchhhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEeeccCCCCCCCCCC
Q 038405 759 QALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNCPNLRELPFN 824 (863)
Q Consensus 759 ~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~ 824 (863)
. ++.+| .....+++|+.|++.+|++|+.++.....+++|+.+.+++|++|+.++..
T Consensus 857 ~-i~~iP---------~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 857 G-IEEVP---------WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred C-CccCh---------HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 4 33444 34567999999999999999999988888999999999999999987653
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.1e-44 Score=382.21 Aligned_cols=271 Identities=35% Similarity=0.604 Sum_probs=223.8
Q ss_pred hhhHHHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcc
Q 038405 158 ADSKLDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDY 235 (863)
Q Consensus 158 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 235 (863)
||.++++|.+.|.+ ++.++|+|+||||+||||||++++++. ..+.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 789999999999999999999999985 358999999999999999999999999999988753
Q ss_pred cc-cccChhhHHHHHHHHhccCcEEEEEcccccccccccccccCCCCCCCeEEEEeecchhhh-----------cccCCH
Q 038405 236 IW-NMKGEYDRAVEILISLRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVC-----------VECLSP 303 (863)
Q Consensus 236 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~~v~-----------l~~L~~ 303 (863)
.. ...+.++....+.+.|+++++||||||||+...|+.+...++....||+||||||+..++ +++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 32 456778899999999999999999999999999999988888778899999999999876 889999
Q ss_pred HHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHhCCCChhhHHHHHHHHhcCCCccCCCCccccch
Q 038405 304 EAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMSSRRSPREWQYVIDELQRNPSRFAGMGNLVFPI 383 (863)
Q Consensus 304 ~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~ 383 (863)
+||++||.+.++.......+...+.+++|+++|+|+|||++++|++|+.+.+..+|+.+++++.....+..+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999865533445667899999999999999999999999776678999999999887754443345679999
Q ss_pred hhcccCCCChhhHhHHhhhhcCCCCCCccchHHHHHHHHhcCCCCCc
Q 038405 384 LRFSYDNLTDDTLKTCFLYCSLFPEENNIRKDELIDLWIGEGFLSDF 430 (863)
Q Consensus 384 l~~sy~~L~~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~ 430 (863)
+.+||+.||++ +|.||+|||+||+++.|+++.++++|+++||+...
T Consensus 240 l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999996 99999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=1.6e-21 Score=242.24 Aligned_cols=109 Identities=26% Similarity=0.293 Sum_probs=49.1
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCcc-ccchhhhcccCccEEe
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIE-ELPSEIMYLKNLKILL 598 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~ 598 (863)
+++|++|++++|.+....+..+.++++|++|+|++|.....+|..++++.+|++|++++|.+. .+|..++++++|++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 444555555444433222222444445555555444323344444444455555555444443 3444444455555555
Q ss_pred cCCCCCccccchhhhcCCCCCceeeccCcch
Q 038405 599 LDGMRHFHLIPARVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 599 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 629 (863)
+++|.....+|.. ++++++|++|++++|.+
T Consensus 243 L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 243 LVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL 272 (968)
T ss_pred CcCceeccccChh-HhCCCCCCEEECcCCee
Confidence 5444433334433 44445555555444443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=4.2e-21 Score=238.43 Aligned_cols=302 Identities=21% Similarity=0.192 Sum_probs=188.7
Q ss_pred ccccceEEEeccCCccc-cCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeec
Q 038405 498 SWREDFRLSLWGSSIEY-LPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNL 576 (863)
Q Consensus 498 ~~~~~~~l~l~~~~~~~-l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 576 (863)
....++++++.+|.+.. +|...+++|++|++++|.+....+..++.+++|++|+|++|.....+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 34577788887777653 44434778888888888776433344778888888888888445577888888888888888
Q ss_pred cCCCcc-ccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhccccee
Q 038405 577 SNTSIE-ELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYE 655 (863)
Q Consensus 577 ~~~~i~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~ 655 (863)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+....+........|+.|....|.+..
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 888765 56888888888888888888755567766 7888888888888877654333333233334443333322210
Q ss_pred eEEeecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEe
Q 038405 656 ISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIR 733 (863)
Q Consensus 656 l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~ 733 (863)
.++.....+++|+.|++++|......+ +..+++|+.|++++|.+.+..+. .+..+++|+.|+++
T Consensus 275 ------------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~ 340 (968)
T PLN00113 275 ------------PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV--ALTSLPRLQVLQLW 340 (968)
T ss_pred ------------cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh--hHhcCCCCCEEECc
Confidence 111222345577778887776554333 66777788888877776554332 34467777888887
Q ss_pred cCCCCCCC-cccccCCCcceEeeccCcchhhhhcccCC---------------ccccccCccCcccceeccccccccccc
Q 038405 734 VCPVIRDL-TWIREAPNLQFLSLVNCQALSEIIESAGS---------------SEVAESHNYFAYLMVIDLDSLPSLKRI 797 (863)
Q Consensus 734 ~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~---------------~~~~~~~~~~~~L~~L~L~~~~~L~~l 797 (863)
+|.....+ ..++.+++|+.|++++|.....+|..... .........+++|+.|.+.++.-...+
T Consensus 341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 77655444 34667777777777777654444332110 001122345677777777665433333
Q ss_pred ccCccCCCCccEEeecc
Q 038405 798 CHGTMPFPSLQNVSVTN 814 (863)
Q Consensus 798 ~~~~~~~~~L~~L~i~~ 814 (863)
+.....+++|+.|++++
T Consensus 421 p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 421 PSEFTKLPLVYFLDISN 437 (968)
T ss_pred ChhHhcCCCCCEEECcC
Confidence 33333455555555543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.6e-22 Score=210.51 Aligned_cols=305 Identities=19% Similarity=0.230 Sum_probs=199.5
Q ss_pred cccceEEEeccCCccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceee
Q 038405 499 WREDFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLN 575 (863)
Q Consensus 499 ~~~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~ 575 (863)
..++..+++..|.+..+|... ..+|+.|+|.+|.+..+....+..++.||+||||.| .+.++|. ++..-.++++|+
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEe
Confidence 346677788888888888876 667888888888888887777888888888888888 7777764 345557888888
Q ss_pred ccCCCccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccce
Q 038405 576 LSNTSIEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIY 654 (863)
Q Consensus 576 L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~ 654 (863)
|++|.|+.+-.. |..|.+|-.|.|+.|. +..+|...|.+|++|+.|++..|.+.......+.+..+++.|..-.|.+.
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 888888877543 7778888888888887 77888887888888888888888776655556667777777777777776
Q ss_pred eeEEe-ecCchhhhhhhcccc-----------ccccccEEEecccCCcccc--cccccCCcceeEeccCcccccCCCCCC
Q 038405 655 EISIT-LGSASALFKINFSWK-----------LCSCIKRLTIMHNLDSHSI--DLRNMMHLETLNIVECSLERVDPTFNG 720 (863)
Q Consensus 655 ~l~~~-~~~~~~l~~l~~~~~-----------~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~~~~~ 720 (863)
+|.-. +..+..++.+....+ .++.|+.|+++.|.....- .++-+++|++|++++|.++.+++. .
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~--s 336 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG--S 336 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh--H
Confidence 66432 222222222222111 2345555666655543322 245556666666666666655443 3
Q ss_pred CCCCCCCCEEEEecCCCCCCC--cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccc
Q 038405 721 WTNFHNLHHLSIRVCPVIRDL--TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRIC 798 (863)
Q Consensus 721 ~~~l~~L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 798 (863)
+..++.|+.|.|+.|. ++.+ ..+..+.+|+.|+|++|...-.|-+ -....+++++|+.|.|.+ .+|++++
T Consensus 337 f~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IED------aa~~f~gl~~LrkL~l~g-Nqlk~I~ 408 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIED------AAVAFNGLPSLRKLRLTG-NQLKSIP 408 (873)
T ss_pred HHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEec------chhhhccchhhhheeecC-ceeeecc
Confidence 4455666666666653 2333 2345566777777776654322211 123456688888888877 4667666
Q ss_pred c-CccCCCCccEEeeccC
Q 038405 799 H-GTMPFPSLQNVSVTNC 815 (863)
Q Consensus 799 ~-~~~~~~~L~~L~i~~C 815 (863)
. ....++.|+.|++.+.
T Consensus 409 krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhhhccCcccceecCCCC
Confidence 4 3344667777776653
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=1.1e-22 Score=214.38 Aligned_cols=307 Identities=22% Similarity=0.244 Sum_probs=198.4
Q ss_pred ccccceEEEeccCCccccCCCC--CCCccEEEeecccc--cccchhhhhcCCCccEEeccCCcCccccchhhhcccccce
Q 038405 498 SWREDFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVL--EIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRC 573 (863)
Q Consensus 498 ~~~~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l--~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 573 (863)
...++.++++.+|.+..+.... ++.||++.+..|.+ ..+|+.+| .+..|.+||||+| .+.+.|..+.+-.++-.
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN-qL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN-QLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchh-hhhhcchhhhhhcCcEE
Confidence 3446777788777777666554 77888888887754 45777744 6788888888888 78888888888888888
Q ss_pred eeccCCCccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhccc
Q 038405 574 LNLSNTSIEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQ 652 (863)
Q Consensus 574 L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~ 652 (863)
|+||+|+|..+|.. +-+|+.|-+|||++|. +..+|+. +..|.+|++|.+++|.+..+........++|+.|...+++
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 88888888888876 5578888888888876 7778877 7788888888888877655443333334444444443321
Q ss_pred ceeeEEeecCchhhhhhhccccccccccEEEecccCCccccc-ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEE
Q 038405 653 IYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID-LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLS 731 (863)
Q Consensus 653 L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~ 731 (863)
..+..++.+...+.+|..++++.|.....++ +-++++|+.|++++|.++.+.. ......+|++|+
T Consensus 209 -----------RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~---~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 209 -----------RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM---TEGEWENLETLN 274 (1255)
T ss_pred -----------chhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec---cHHHHhhhhhhc
Confidence 1222233333344566666666665554443 5566677777777776665532 122345666666
Q ss_pred EecCCCCCCCcccccCCCcceEeeccCcc-hhhhhcccCC--------------ccccccCccCcccceecccccccccc
Q 038405 732 IRVCPVIRDLTWIREAPNLQFLSLVNCQA-LSEIIESAGS--------------SEVAESHNYFAYLMVIDLDSLPSLKR 796 (863)
Q Consensus 732 L~~~~~~~~l~~l~~l~~L~~L~L~~~~~-l~~i~~~~~~--------------~~~~~~~~~~~~L~~L~L~~~~~L~~ 796 (863)
++.|....-+..+..|++|+.|.+.+|.. .+.||...|. +..+.....++.|+.|.|.+ ..|-.
T Consensus 275 lSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiT 353 (1255)
T KOG0444|consen 275 LSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLIT 353 (1255)
T ss_pred cccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceee
Confidence 66664433334456666666666655542 1223332211 11223456677888888754 56777
Q ss_pred cccCccCCCCccEEeeccCCCCCCCCC
Q 038405 797 ICHGTMPFPSLQNVSVTNCPNLRELPF 823 (863)
Q Consensus 797 l~~~~~~~~~L~~L~i~~C~~L~~lp~ 823 (863)
++....-+|.|+.|++.+.|+|.--|-
T Consensus 354 LPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred chhhhhhcCCcceeeccCCcCccCCCC
Confidence 787778889999999999999985543
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.9e-18 Score=214.62 Aligned_cols=298 Identities=23% Similarity=0.290 Sum_probs=224.7
Q ss_pred ccccceEEEeccCCccccCCCC--CCCccEEEeecc-cccccchhhhhcCCCccEEeccCCcCccccchhhhccccccee
Q 038405 498 SWREDFRLSLWGSSIEYLPETP--CPHLQTLLVRFT-VLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCL 574 (863)
Q Consensus 498 ~~~~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~-~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 574 (863)
...+++.|.+.++.+..++... +++|+.|+++++ .+..+|. +..+++|+.|+|++|..+..+|..++++++|++|
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 4567889999999999887765 999999999987 5777775 7889999999999998899999999999999999
Q ss_pred eccCC-CccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcc--
Q 038405 575 NLSNT-SIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGN-- 651 (863)
Q Consensus 575 ~L~~~-~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n-- 651 (863)
++++| .+..+|..+ ++++|++|++++|..+..+|.. .++|++|++.+|.+..++... ...+|..|.....
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPSNL--RLENLDELILCEMKS 759 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccccccccc--cccccccccccccch
Confidence 99998 899999877 7999999999999888877752 468899999988765543211 2233333322210
Q ss_pred -------------------cceeeEEeecCchhhhhhhccccccccccEEEecccCCccccc-ccccCCcceeEeccCc-
Q 038405 652 -------------------QIYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID-LRNMMHLETLNIVECS- 710 (863)
Q Consensus 652 -------------------~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~~~- 710 (863)
.|+.+. +.++..+..++.+...+++|+.|++++|......+ ..++++|+.|++++|.
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~--Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLF--LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSR 837 (1153)
T ss_pred hhccccccccchhhhhccccchhee--CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCc
Confidence 122221 22223333445555678899999999987655543 3368899999999997
Q ss_pred ccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccc
Q 038405 711 LERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDS 790 (863)
Q Consensus 711 l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~ 790 (863)
+..++. ...+|+.|+|+++.....+.++..+++|+.|+|++|..++.++. ....+++|+.+.+.+
T Consensus 838 L~~~p~------~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~---------~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 838 LRTFPD------ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL---------NISKLKHLETVDFSD 902 (1153)
T ss_pred cccccc------cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc---------ccccccCCCeeecCC
Confidence 444332 25789999999986555455789999999999999999988764 456789999999999
Q ss_pred cccccccccCc-------------cCCCCccEEeeccCCCCCCC
Q 038405 791 LPSLKRICHGT-------------MPFPSLQNVSVTNCPNLREL 821 (863)
Q Consensus 791 ~~~L~~l~~~~-------------~~~~~L~~L~i~~C~~L~~l 821 (863)
|++|+.++... ..+|+...+.+.+|.+|..-
T Consensus 903 C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~ 946 (1153)
T PLN03210 903 CGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQE 946 (1153)
T ss_pred CcccccccCCCCchhhhhhcccccccCCchhccccccccCCCch
Confidence 99998765422 12455566788899888743
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=5e-20 Score=193.57 Aligned_cols=325 Identities=23% Similarity=0.284 Sum_probs=179.4
Q ss_pred ceEEEeccCCccccCCC--C-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeecc
Q 038405 502 DFRLSLWGSSIEYLPET--P-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLS 577 (863)
Q Consensus 502 ~~~l~l~~~~~~~l~~~--~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~ 577 (863)
.+.|.+++|.+..+... . +++|+.+.+.+|.++.+|.. .....+|+.|+|.+| .|.++ .+++..++.|+.||||
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 34455555554443332 1 45555555555555555541 222334555555555 33332 2334455555666666
Q ss_pred CCCccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceee
Q 038405 578 NTSIEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEI 656 (863)
Q Consensus 578 ~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l 656 (863)
.|.|.++|.. +..=.++++|+|++|. +..+..+.|.++.+|-+|.++.|+++.++...+.....|+.|..-.|.++..
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 6655555432 3333456666666655 4445444456666666666666666555555554455555555555555554
Q ss_pred -EEeecCchhhhhhhcccc-----------ccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCC
Q 038405 657 -SITLGSASALFKINFSWK-----------LCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWT 722 (863)
Q Consensus 657 -~~~~~~~~~l~~l~~~~~-----------~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 722 (863)
+..+..+.+++.+.+..+ .+.+++.|+|+.|....... +-+++.|+.|++++|.+..+... +++
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d--~Ws 314 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID--SWS 314 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc--hhh
Confidence 445555555554443322 24466666666665543322 56677777777777776666443 445
Q ss_pred CCCCCCEEEEecCCCCCCC--cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccccccccccccc-
Q 038405 723 NFHNLHHLSIRVCPVIRDL--TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICH- 799 (863)
Q Consensus 723 ~l~~L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~- 799 (863)
..++|+.|+|++|.. +.+ ..+..|..|+.|.|++|+ +..+-+ ..+.++.+|+.|+|++.. | +|+.
T Consensus 315 ftqkL~~LdLs~N~i-~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e--------~af~~lssL~~LdLr~N~-l-s~~IE 382 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRI-TRLDEGSFRVLSQLEELNLSHNS-IDHLAE--------GAFVGLSSLHKLDLRSNE-L-SWCIE 382 (873)
T ss_pred hcccceeEecccccc-ccCChhHHHHHHHhhhhcccccc-hHHHHh--------hHHHHhhhhhhhcCcCCe-E-EEEEe
Confidence 667777777777743 333 235667777777777776 333322 344567778888877632 2 2222
Q ss_pred ----CccCCCCccEEeeccCCCCCCCCCCCCCCCCcceEEEchHhhhhcCcccchhhhh
Q 038405 800 ----GTMPFPSLQNVSVTNCPNLRELPFNFDSAKNSLVSIRGSAEWWEQLQWEDEATKH 854 (863)
Q Consensus 800 ----~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~~~~~l~w~~~~~~~ 854 (863)
..+.+|+|++|.+.+ .+|+.+|-........| ++|..-+|++.+
T Consensus 383 Daa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~L----------E~LdL~~NaiaS 430 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEAL----------EHLDLGDNAIAS 430 (873)
T ss_pred cchhhhccchhhhheeecC-ceeeecchhhhccCccc----------ceecCCCCccee
Confidence 234578888888887 57888876443333333 455555665544
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=1.4e-20 Score=198.63 Aligned_cols=269 Identities=23% Similarity=0.280 Sum_probs=157.5
Q ss_pred ccccceEEEeccCCccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceee
Q 038405 498 SWREDFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLN 575 (863)
Q Consensus 498 ~~~~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 575 (863)
.+..+..+.++.|.+++.|... .+++-+|+|++|.+..+|...|-++.-|-+||||+| .+..+|+.+..|.+|++|+
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhh
Confidence 3344555555555555555544 455555555555555555555555555555555555 5555555555555555555
Q ss_pred ccCCCcc-----ccchhhhcccCccEEecCCCCC-ccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhh
Q 038405 576 LSNTSIE-----ELPSEIMYLKNLKILLLDGMRH-FHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECL 649 (863)
Q Consensus 576 L~~~~i~-----~lP~~i~~L~~L~~L~l~~~~~-l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l 649 (863)
|++|.+. .+|+ +++|++|.+++++. +..+|.+ +..|.+|..++++.|++...+..- -...+|..|...
T Consensus 180 Ls~NPL~hfQLrQLPs----mtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~vPecl-y~l~~LrrLNLS 253 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPS----MTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPIVPECL-YKLRNLRRLNLS 253 (1255)
T ss_pred cCCChhhHHHHhcCcc----chhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCCcchHHH-hhhhhhheeccC
Confidence 5555332 3332 44555555555432 3344544 455555555555554433221111 123344444444
Q ss_pred cccceeeEEeecCchhhhhhhccccccccccEEEecccCCccccc-ccccCCcceeEeccCcc--cccCCCCCCCCCCCC
Q 038405 650 GNQIYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID-LRNMMHLETLNIVECSL--ERVDPTFNGWTNFHN 726 (863)
Q Consensus 650 ~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~~~l--~~~~~~~~~~~~l~~ 726 (863)
.|++++|..... ...+|++|+++.|.....++ +..++.|+.|.+.+|.+ +++|. +++.+.+
T Consensus 254 ~N~iteL~~~~~-------------~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS---GIGKL~~ 317 (1255)
T KOG0444|consen 254 GNKITELNMTEG-------------EWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS---GIGKLIQ 317 (1255)
T ss_pred cCceeeeeccHH-------------HHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc---chhhhhh
Confidence 444444433322 23367777777777665554 77888888888888874 44443 5678888
Q ss_pred CCEEEEecCCCCCCCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccccccccccccc
Q 038405 727 LHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICH 799 (863)
Q Consensus 727 L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~ 799 (863)
|+.+...+|..--.+..+..|+.|+.|.|+.|..+ .+|+ ...-++.|+.|++.+.|+|.-=+.
T Consensus 318 Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPe---------aIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 318 LEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPE---------AIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hHHHHhhccccccCchhhhhhHHHHHhccccccee-echh---------hhhhcCCcceeeccCCcCccCCCC
Confidence 88888888854334456888999999999887743 4443 445688999999999988865544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=5.1e-19 Score=178.26 Aligned_cols=210 Identities=23% Similarity=0.237 Sum_probs=161.5
Q ss_pred cccccceEEEeccCCccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhccccccee
Q 038405 497 DSWREDFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCL 574 (863)
Q Consensus 497 ~~~~~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 574 (863)
.......++..+.|.+..+|... ..+++.|+.++|.+..+|++ ++.+-.|..|+..+| .+.++|..++++..|..|
T Consensus 88 g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 88 GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKL 165 (565)
T ss_pred HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhcccc-ccccCchHHHHHHHHHHh
Confidence 34445667777888888888776 77888888888888888887 667788888888888 888899999999999999
Q ss_pred eccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccce
Q 038405 575 NLSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIY 654 (863)
Q Consensus 575 ~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~ 654 (863)
++.+|+++.+|+..-+++.|++||...|. +..+|+. ++.|.+|..|++..|.+..++ .+.++..+.+|....|+++
T Consensus 166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 166 DLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIE 241 (565)
T ss_pred hccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHH
Confidence 99999999998887779999999988876 8889988 899999999999998887665 4447788888888887777
Q ss_pred eeEEeec-Cchh----------hhhhhccccccccccEEEecccCCccccc-ccccCCcceeEeccCcccc
Q 038405 655 EISITLG-SASA----------LFKINFSWKLCSCIKRLTIMHNLDSHSID-LRNMMHLETLNIVECSLER 713 (863)
Q Consensus 655 ~l~~~~~-~~~~----------l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~ 713 (863)
.++.... .+.+ ++.++.....+.+|.+|++++|.....+. ++++ +|+.|.+.||.+..
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH
Confidence 6654432 2222 23333344456678888888887765553 7777 88888888886443
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=1.5e-17 Score=184.64 Aligned_cols=100 Identities=27% Similarity=0.313 Sum_probs=81.0
Q ss_pred cceEEEeccCCccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccC
Q 038405 501 EDFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSN 578 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 578 (863)
++.++.+++|.+..+|... .++|+.|.++.|.+..+|.. ..++.+|++|.|.+| .+..+|.++..+.+|++|++++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccch
Confidence 4778888888888888876 78899999999988888855 788899999999988 8889999999999999999999
Q ss_pred CCccccchhhhcccCccEEecCCC
Q 038405 579 TSIEELPSEIMYLKNLKILLLDGM 602 (863)
Q Consensus 579 ~~i~~lP~~i~~L~~L~~L~l~~~ 602 (863)
|.+..+|..+..+..+..+..++|
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcc
Confidence 988887766655555555444444
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=3.4e-18 Score=172.33 Aligned_cols=235 Identities=23% Similarity=0.286 Sum_probs=116.8
Q ss_pred ceEEEeccCCccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCC
Q 038405 502 DFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNT 579 (863)
Q Consensus 502 ~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 579 (863)
+..+.+++|...++|... ...+..|+++.|++..+|+. +..+..|+.|+.+++ ...++|++|+.+..|..|+..+|
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N 147 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNN 147 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhcccc
Confidence 334444445444444443 44444555555555555544 344445555555555 44455555555555555555555
Q ss_pred CccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEe
Q 038405 580 SIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISIT 659 (863)
Q Consensus 580 ~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~ 659 (863)
+|.++|.+++++.+|..|++.+|. +..+|+..+. |+.|++|+...|-+..+++ ...+..++.-|....|.++.+| .
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~-~lg~l~~L~~LyL~~Nki~~lP-e 223 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLETLPP-ELGGLESLELLYLRRNKIRFLP-E 223 (565)
T ss_pred ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhhcCCh-hhcchhhhHHHHhhhcccccCC-C
Confidence 555555555555555555555544 4444444222 5555555544443332221 1123333333444444444444 3
Q ss_pred ecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCC
Q 038405 660 LGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPV 737 (863)
Q Consensus 660 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~ 737 (863)
+.+++. |..|+++.|.....+. ...+++|..|++..|.+++.|.. ..-+.+|.+|++++|..
T Consensus 224 f~gcs~-------------L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde---~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 224 FPGCSL-------------LKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE---ICLLRSLERLDLSNNDI 287 (565)
T ss_pred CCccHH-------------HHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH---HHHhhhhhhhcccCCcc
Confidence 333333 3333333333322221 44566777777777777666543 22456677777777755
Q ss_pred CCCCcccccCCCcceEeeccCc
Q 038405 738 IRDLTWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 738 ~~~l~~l~~l~~L~~L~L~~~~ 759 (863)
..-++.++++ .|+.|-+.||+
T Consensus 288 s~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 288 SSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccCCcccccc-eeeehhhcCCc
Confidence 4444566776 67777777776
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=7.8e-15 Score=168.97 Aligned_cols=110 Identities=25% Similarity=0.306 Sum_probs=51.6
Q ss_pred EEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCcccc
Q 038405 505 LSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEEL 584 (863)
Q Consensus 505 l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~l 584 (863)
+.+..+.+..+|....++|+.|.+.+|.++.+|. .+++|++|++++| .++.+|.. ..+|++|++++|.+..+
T Consensus 206 LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~L~~L 277 (788)
T PRK15387 206 LNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNPLTHL 277 (788)
T ss_pred EEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccCCchhhh
Confidence 4444444444444434455555555555554443 1345555555555 44444432 23445555555555554
Q ss_pred chhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchh
Q 038405 585 PSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 585 P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
|... .+|+.|++++|. +..+|.. +++|+.|++++|.+.
T Consensus 278 p~lp---~~L~~L~Ls~N~-Lt~LP~~----p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 278 PALP---SGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLA 315 (788)
T ss_pred hhch---hhcCEEECcCCc-ccccccc----ccccceeECCCCccc
Confidence 4321 344455555554 4444431 234555555555443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=1.4e-14 Score=168.12 Aligned_cols=246 Identities=18% Similarity=0.179 Sum_probs=164.4
Q ss_pred ceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCc
Q 038405 502 DFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSI 581 (863)
Q Consensus 502 ~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i 581 (863)
...+.+.++.+..+|....++|+.|++++|.++.+|...+ .+|++|++++| .++.+|..+. .+|+.|+|++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCCcc
Confidence 4567777778888887667788999999998888887643 58899999988 7888887664 4788999999988
Q ss_pred cccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeec
Q 038405 582 EELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLG 661 (863)
Q Consensus 582 ~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~ 661 (863)
..+|..+. .+|+.|++++|. +..+|.. +. ++|++|++++|.+..++.. ...++..|....|.+..++..
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP~~---lp~sL~~L~Ls~N~Lt~LP~~-- 322 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSIRTLPAH---LPSGITHLNVQSNSLTALPET-- 322 (754)
T ss_pred CcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCccccCccc---chhhHHHHHhcCCccccCCcc--
Confidence 88888764 578999998876 6778876 32 5788999988877654321 123566666666666544321
Q ss_pred CchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCC
Q 038405 662 SASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDL 741 (863)
Q Consensus 662 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l 741 (863)
..++|+.|++++|.....+. .-+++|+.|++++|.+..++.. ..++|+.|+|++|.....+
T Consensus 323 -------------l~~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~L~~LP~~-----lp~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 323 -------------LPPGLKTLEAGENALTSLPA-SLPPELQVLDVSKNQITVLPET-----LPPTITTLDVSRNALTNLP 383 (754)
T ss_pred -------------ccccceeccccCCccccCCh-hhcCcccEEECCCCCCCcCChh-----hcCCcCEEECCCCcCCCCC
Confidence 12367777777776554332 1126788888888887765432 2367888888888544333
Q ss_pred cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccccc
Q 038405 742 TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSL 791 (863)
Q Consensus 742 ~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~ 791 (863)
+.+. ++|+.|++++|. +..+|... ......++++..+.+.+.
T Consensus 384 ~~l~--~sL~~LdLs~N~-L~~LP~sl-----~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 384 ENLP--AALQIMQASRNN-LVRLPESL-----PHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred HhHH--HHHHHHhhccCC-cccCchhH-----HHHhhcCCCccEEEeeCC
Confidence 3332 368888888876 34544311 111223466666666553
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=6.7e-16 Score=171.75 Aligned_cols=265 Identities=22% Similarity=0.244 Sum_probs=193.5
Q ss_pred cceEEEeccCCccccCCCC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCC
Q 038405 501 EDFRLSLWGSSIEYLPETP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNT 579 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 579 (863)
..+++....|.+..+...+ ..+|.+++++.|.+..+| ++++.+.+|..|+..+| .+..+|..+....+|++|.+.+|
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh
Confidence 5666777777666544444 678888888888888888 67888889999998888 77888888888888999999888
Q ss_pred CccccchhhhcccCccEEecCCCCCccccchhhhcCCCC-CceeeccCcchhhhccCCCCccccchhhhhhcccceeeEE
Q 038405 580 SIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLS-LKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISI 658 (863)
Q Consensus 580 ~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~ 658 (863)
.++.+|+....+.+|++|+|..|. +..+|...+..+.. |+.|+.+.|.+.............+++|..-+|+|..-.+
T Consensus 298 el~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence 888888888888899999998887 77888776655554 6777666665544443333345567777777766642211
Q ss_pred eecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCC
Q 038405 659 TLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCP 736 (863)
Q Consensus 659 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 736 (863)
. ......+|+.|++++|.....++ +.+++.|++|+++||.++.++. ....+..|+.|...+|.
T Consensus 377 p------------~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~---tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 377 P------------VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD---TVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred h------------hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH---HHHhhhhhHHHhhcCCc
Confidence 1 11234589999999997765554 8888999999999999888863 34578889999888884
Q ss_pred CCCCCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccccccc
Q 038405 737 VIRDLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPS 793 (863)
Q Consensus 737 ~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 793 (863)
+..+|.+.++|.|+.++++.|.. ..+.- ..... -|+|++|+|++.+.
T Consensus 442 -l~~fPe~~~l~qL~~lDlS~N~L-~~~~l-------~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 442 -LLSFPELAQLPQLKVLDLSCNNL-SEVTL-------PEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred -eeechhhhhcCcceEEecccchh-hhhhh-------hhhCC-CcccceeeccCCcc
Confidence 44556888999999999987763 33211 01111 17899999988665
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=5.2e-15 Score=149.56 Aligned_cols=250 Identities=20% Similarity=0.289 Sum_probs=165.7
Q ss_pred EeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcc-ccchhhhcccccceeeccC-CCccc
Q 038405 506 SLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLT-QLPAEMGALINLRCLNLSN-TSIEE 583 (863)
Q Consensus 506 ~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~~L~~L~~L~L~~-~~i~~ 583 (863)
.-.+..+.++|....+....+.|..|.|+.+|++.|+.+++||.||||+| .|+ .-|..|.+|..|-.|-+.+ |+|+.
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 33455677788887888899999999999999999999999999999999 665 4588999999988887666 79999
Q ss_pred cchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhccc------ce--
Q 038405 584 LPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQ------IY-- 654 (863)
Q Consensus 584 lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~------L~-- 654 (863)
+|.. |+.|..|+.|.+.-|. +..++.+++..|++|..|.++.|.+..+....+.....++.+..-.|. +.
T Consensus 131 l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 9987 8899999999998887 778888889999999999999887655544344444555555444332 11
Q ss_pred -----eeEEeecCch-----hhh-----hhhccccccccccEE--Ee-ccc-CCccccc--ccccCCcceeEeccCcccc
Q 038405 655 -----EISITLGSAS-----ALF-----KINFSWKLCSCIKRL--TI-MHN-LDSHSID--LRNMMHLETLNIVECSLER 713 (863)
Q Consensus 655 -----~l~~~~~~~~-----~l~-----~l~~~~~~~~~L~~L--~l-~~~-~~~~~~~--l~~~~~L~~L~l~~~~l~~ 713 (863)
..++.+.... .+. +.... ....+++.+ .+ +.| .+...+. |..+++|++|++++|.++.
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~-kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDAR-KFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchh-hhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 1111111100 000 00000 000011111 11 111 1111111 7778888888888888777
Q ss_pred cCCCCCCCCCCCCCCEEEEecCCCCCCC--cccccCCCcceEeeccCcch
Q 038405 714 VDPTFNGWTNFHNLHHLSIRVCPVIRDL--TWIREAPNLQFLSLVNCQAL 761 (863)
Q Consensus 714 ~~~~~~~~~~l~~L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l 761 (863)
+... .+.....|++|.|..|. +..+ ..+..+..|+.|+|.+|+..
T Consensus 289 i~~~--aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 289 IEDG--AFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred hhhh--hhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeE
Confidence 7443 35567777888887774 3333 34667778888888877743
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=3.1e-14 Score=165.28 Aligned_cols=225 Identities=19% Similarity=0.219 Sum_probs=171.7
Q ss_pred ccceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCC
Q 038405 500 REDFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNT 579 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 579 (863)
..++.+.+.+|.++.+|...+++|++|++++|.++.+|..+ ..+|+.|+|++| .+..+|..+. .+|++|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-RITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhh---hccccEEECcCC-ccCcCChhHh--CCCCEEECcCC
Confidence 46889999999999998877889999999999999998763 357999999999 7889998775 58999999999
Q ss_pred CccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEe
Q 038405 580 SIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISIT 659 (863)
Q Consensus 580 ~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~ 659 (863)
++..+|..+. .+|++|++++|. +..+|.. +. ++|++|++++|.+..++.. ...+|+.|....|.+..++..
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt~LP~~---l~~sL~~L~Ls~N~Lt~LP~~ 343 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLTALPET---LPPGLKTLEAGENALTSLPAS 343 (754)
T ss_pred ccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccccCCcc---ccccceeccccCCccccCChh
Confidence 9999998764 589999999997 7788865 32 5789999999887654322 124556665555555433311
Q ss_pred ecCchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCC
Q 038405 660 LGSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIR 739 (863)
Q Consensus 660 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 739 (863)
.+++|+.|++++|.....+. .-.++|+.|+|++|.+..++.. ...+|+.|++++|....
T Consensus 344 ---------------l~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~Lt~LP~~-----l~~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 344 ---------------LPPELQVLDVSKNQITVLPE-TLPPTITTLDVSRNALTNLPEN-----LPAALQIMQASRNNLVR 402 (754)
T ss_pred ---------------hcCcccEEECCCCCCCcCCh-hhcCCcCEEECCCCcCCCCCHh-----HHHHHHHHhhccCCccc
Confidence 13589999999997654332 2236899999999998877553 23579999999996543
Q ss_pred CCc----ccccCCCcceEeeccCcc
Q 038405 740 DLT----WIREAPNLQFLSLVNCQA 760 (863)
Q Consensus 740 ~l~----~l~~l~~L~~L~L~~~~~ 760 (863)
.+. ....+|++..|+|.+|+.
T Consensus 403 LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 403 LPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CchhHHHHhhcCCCccEEEeeCCCc
Confidence 322 234568999999999874
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=3.3e-13 Score=155.68 Aligned_cols=234 Identities=22% Similarity=0.172 Sum_probs=147.0
Q ss_pred ccceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCC
Q 038405 500 REDFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNT 579 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 579 (863)
..++.|.+.+|.++.+|.. +++|++|++++|.++.+|.. .++|+.|++++| .+..+|... .+|+.|++++|
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l-p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N 292 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL-PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTHLPALP---SGLCKLWIFGN 292 (788)
T ss_pred cCCCEEEccCCcCCCCCCC-CCCCcEEEecCCccCcccCc----ccccceeeccCC-chhhhhhch---hhcCEEECcCC
Confidence 3678899999999888753 68899999999988888752 468889999988 777777633 56778888888
Q ss_pred CccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEe
Q 038405 580 SIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISIT 659 (863)
Q Consensus 580 ~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~ 659 (863)
+++.+|.. +++|+.|++++|. +..+|.. . .+|+.|++.+|.+..++. ...+|+.|....|+|..++..
T Consensus 293 ~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~l 360 (788)
T PRK15387 293 QLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQLASLPTL 360 (788)
T ss_pred cccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCccccccc----cccccceEecCCCccCCCCCC
Confidence 88888863 4678888888886 6666642 2 356677777776654331 113455555555555443311
Q ss_pred ecCchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCC
Q 038405 660 LGSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIR 739 (863)
Q Consensus 660 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 739 (863)
..+|..|++++|.....+.+ +.+|+.|++++|.+..++.. .++|+.|++++|.. .
T Consensus 361 ----------------p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l------~s~L~~LdLS~N~L-s 415 (788)
T PRK15387 361 ----------------PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL------PSELKELMVSGNRL-T 415 (788)
T ss_pred ----------------CcccceehhhccccccCccc--ccccceEEecCCcccCCCCc------ccCCCEEEccCCcC-C
Confidence 12455555555554432221 24566777777666654431 34666777777643 3
Q ss_pred CCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccccc
Q 038405 740 DLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSL 791 (863)
Q Consensus 740 ~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~ 791 (863)
.+|.+ +.+|+.|++++|. +..+|. ....+++|+.|+|+++
T Consensus 416 sIP~l--~~~L~~L~Ls~Nq-Lt~LP~---------sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 416 SLPML--PSGLLSLSVYRNQ-LTRLPE---------SLIHLSSETTVNLEGN 455 (788)
T ss_pred CCCcc--hhhhhhhhhccCc-ccccCh---------HHhhccCCCeEECCCC
Confidence 33322 2456666666665 344443 2344666666666654
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.43 E-value=1.9e-13 Score=161.24 Aligned_cols=298 Identities=20% Similarity=0.266 Sum_probs=190.4
Q ss_pred cceEEEeccCC--ccccCCC--C-CCCccEEEeecc-cccccchhhhhcCCCccEEeccCCcCccccchhhhccccccee
Q 038405 501 EDFRLSLWGSS--IEYLPET--P-CPHLQTLLVRFT-VLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCL 574 (863)
Q Consensus 501 ~~~~l~l~~~~--~~~l~~~--~-~~~Lr~L~l~~~-~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 574 (863)
+++.+-+..|. +..++.. . ++.||+|++++| .+..+|.. ++.+-+||||+++++ .+..+|.++++|..|.||
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 57777777775 5555552 3 899999999988 78889877 899999999999999 899999999999999999
Q ss_pred eccCC-CccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccc
Q 038405 575 NLSNT-SIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQI 653 (863)
Q Consensus 575 ~L~~~-~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L 653 (863)
|+..+ .+..+|.....|++||+|.+.... .. .....++.+.+|++|....+..... ..++.+.... .|
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~-~~~~~l~el~~Le~L~~ls~~~~s~--------~~~e~l~~~~-~L 692 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA-LS-NDKLLLKELENLEHLENLSITISSV--------LLLEDLLGMT-RL 692 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc-cc-cchhhHHhhhcccchhhheeecchh--------HhHhhhhhhH-HH
Confidence 99998 455556666679999999997654 11 1111244445555554433221110 0111111111 11
Q ss_pred eeeEEeec-CchhhhhhhccccccccccEEEecccCCccccc-------ccc-cCCcceeEeccCc-ccccCCCCCCCCC
Q 038405 654 YEISITLG-SASALFKINFSWKLCSCIKRLTIMHNLDSHSID-------LRN-MMHLETLNIVECS-LERVDPTFNGWTN 723 (863)
Q Consensus 654 ~~l~~~~~-~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-------l~~-~~~L~~L~l~~~~-l~~~~~~~~~~~~ 723 (863)
......+. ..........+...+.+|+.|.+.+|...+... ... ++++..+.+.+|. ...+.|.. .
T Consensus 693 ~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~----f 768 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL----F 768 (889)
T ss_pred HHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh----c
Confidence 11111111 012233344455667799999999998764321 111 4466666666665 44444432 5
Q ss_pred CCCCCEEEEecCCCCCCC-cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCc-
Q 038405 724 FHNLHHLSIRVCPVIRDL-TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGT- 801 (863)
Q Consensus 724 l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~- 801 (863)
.++|+.|.+..|+...++ |....+..++.+.+..+.. .... ...+.++|+++..+.+.... |..|..+.
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~-~~l~-------~~~~l~~l~~i~~~~l~~~~-l~~~~ve~~ 839 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKL-EGLR-------MLCSLGGLPQLYWLPLSFLK-LEELIVEEC 839 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEeccccc-ccce-------eeecCCCCceeEecccCccc-hhheehhcC
Confidence 789999999999988876 5556666666544443332 1110 12345566666666665533 66665554
Q ss_pred ---cCCCCccEEeeccC-CCCCCCCCC
Q 038405 802 ---MPFPSLQNVSVTNC-PNLRELPFN 824 (863)
Q Consensus 802 ---~~~~~L~~L~i~~C-~~L~~lp~~ 824 (863)
..+|.+.++.+.+| +++..+|..
T Consensus 840 p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 840 PKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred cccccCccccccceeccccceeecCCc
Confidence 56789999999997 889888864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=7.6e-15 Score=131.30 Aligned_cols=163 Identities=25% Similarity=0.418 Sum_probs=119.2
Q ss_pred CCccccccceEEEeccCCccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhccccc
Q 038405 494 KSADSWREDFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINL 571 (863)
Q Consensus 494 ~~~~~~~~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L 571 (863)
+.....+.+.++.+++|.+..+|... +.+|++|++++|.++.+|.+ ++.++.||.|+++-| .+..+|..||.++.|
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSFPAL 104 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCCchh
Confidence 34445567778888888888777766 78888888888888888876 678888888888877 777888888888888
Q ss_pred ceeeccCCCcc--ccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhh
Q 038405 572 RCLNLSNTSIE--ELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECL 649 (863)
Q Consensus 572 ~~L~L~~~~i~--~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l 649 (863)
+.|||.+|++. .+|-.+..++-|+.|++++|. ...+|++ +++|++||.|.+..|.+..++.. ......+++|..-
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcc
Confidence 88888888665 578777778888888888876 6777777 78888888888877766544322 1244556666666
Q ss_pred cccceeeEEeec
Q 038405 650 GNQIYEISITLG 661 (863)
Q Consensus 650 ~n~L~~l~~~~~ 661 (863)
+|.|..++..+.
T Consensus 182 gnrl~vlppel~ 193 (264)
T KOG0617|consen 182 GNRLTVLPPELA 193 (264)
T ss_pred cceeeecChhhh
Confidence 666666554433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=3e-14 Score=127.52 Aligned_cols=162 Identities=22% Similarity=0.296 Sum_probs=95.8
Q ss_pred cCCCC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccC
Q 038405 515 LPETP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKN 593 (863)
Q Consensus 515 l~~~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~ 593 (863)
++... +++++.|.++.|++..+|+. +..+.+|++|++++| .++++|.+++.|+.|+.|++.-|++..+|.+++.++-
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 34333 56666667777766666666 566667777777666 6667777777777777777766666666777777777
Q ss_pred ccEEecCCCCCc-cccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhcc
Q 038405 594 LKILLLDGMRHF-HLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFS 672 (863)
Q Consensus 594 L~~L~l~~~~~l-~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~ 672 (863)
|+.||+.+|+.- ..+|.+ |-.|+.|+-|+++.|.+.-+ + ..
T Consensus 104 levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe~l------------------------p-------------~d 145 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFEIL------------------------P-------------PD 145 (264)
T ss_pred hhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcccC------------------------C-------------hh
Confidence 777776665422 234544 44555555555554432211 1 11
Q ss_pred ccccccccEEEecccCCcccc-cccccCCcceeEeccCcccccCC
Q 038405 673 WKLCSCIKRLTIMHNLDSHSI-DLRNMMHLETLNIVECSLERVDP 716 (863)
Q Consensus 673 ~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~ 716 (863)
...+++|+.|.+..|.....+ +++.++.|++|+|.+|.++-++|
T Consensus 146 vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 146 VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecCh
Confidence 122335556666665544433 26666677777777776665554
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=6.8e-11 Score=146.58 Aligned_cols=286 Identities=14% Similarity=0.165 Sum_probs=177.1
Q ss_pred cCCccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC-CCHHHHHHHHHH
Q 038405 150 MATEKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE-GNLEKIQEVIRK 228 (863)
Q Consensus 150 ~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~ 228 (863)
+.+..+|-|+.-.+.+-. ....+++.|.|++|.||||++.++.... + .++|+++... .+...+...++.
T Consensus 11 ~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHH
Confidence 334567778766555532 2467899999999999999999987543 2 5899999644 455666666666
Q ss_pred HcCCCccc----c-------cccChhhHHHHHHHHhc--cCcEEEEEccccccc--ccc-cccccCCCCCCCeEEEEeec
Q 038405 229 KLDISDYI----W-------NMKGEYDRAVEILISLR--RKKFVLLLDDVWERL--DLS-KTGVSLSDCQNGSKIVFTTR 292 (863)
Q Consensus 229 ~l~~~~~~----~-------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~~~-~~~~~l~~~~~gs~iivTTr 292 (863)
.+...... . ...+.......+...+. +.+++|||||+.... ... .+...+.....+.++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 66311100 0 00122223333444443 579999999997542 112 22222233345678889999
Q ss_pred chhhh-------------cc----cCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHhCCCC
Q 038405 293 SEEVC-------------VE----CLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMSSRRS 355 (863)
Q Consensus 293 ~~~v~-------------l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~ 355 (863)
...-. +. +|+.+|+.++|....+... ..+...+|.+.|+|.|+++..++..+.....
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 84211 33 8899999999987665321 2567789999999999999999887754321
Q ss_pred hhhHHHHHHHHhcCCCccCCCCccccchhhc-ccCCCChhhHhHHhhhhcCCCCCCccchHHHHHHHHhcCCCCCccchh
Q 038405 356 PREWQYVIDELQRNPSRFAGMGNLVFPILRF-SYDNLTDDTLKTCFLYCSLFPEENNIRKDELIDLWIGEGFLSDFRSIT 434 (863)
Q Consensus 356 ~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~~~~~ 434 (863)
.. ......+... ....+...+.- .++.||++ .+..+...|+++ .++.+ +.. .+..
T Consensus 235 ~~--~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~-----~l~~------ 290 (903)
T PRK04841 235 SL--HDSARRLAGI------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIV-----RVTG------ 290 (903)
T ss_pred ch--hhhhHhhcCC------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHH-----HHcC------
Confidence 00 0111111100 01123333332 37899996 999999999986 33332 221 1111
Q ss_pred HHhhhHHHHHHHHHHhccccc-CCCCCCeEEechHHHHHHHHhh
Q 038405 435 TARNQGEYIIGSLKLACLLES-GEYSEDFVKMHDVVRDMALWLA 477 (863)
Q Consensus 435 ~~~~~~~~~~~~L~~~~ll~~-~~~~~~~~~mHdlv~d~~~~i~ 477 (863)
.+.+...+++|.+.+++.. .+....+|+.|++++++.+...
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 2234667999999998653 3333468999999999998664
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=8.8e-13 Score=133.69 Aligned_cols=256 Identities=19% Similarity=0.220 Sum_probs=183.0
Q ss_pred cceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceeec
Q 038405 501 EDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLNL 576 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L 576 (863)
....+.+..|.|+.+|... +++||.|+|++|.|+.+.++.|.+++.|-.|-+.++..|+.+|. .|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 5667889999999999886 88999999999999999999999999998888877549999997 5789999999999
Q ss_pred cCCCccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhh------------hccCCCCccccc
Q 038405 577 SNTSIEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIE------------LHRMPPNQTTIL 643 (863)
Q Consensus 577 ~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~------------~~~~~~~~~~~l 643 (863)
.-|++..++.. +..|++|..|.+.+|. +..++.+.+..+.+++++++..|.+.. ..+..+++..-.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 99999988655 8899999999999987 888888779999999999887655210 011111111111
Q ss_pred hhhhhhcccceeeEEe--ecCchhhhhh------------hccccccccccEEEecccCCccccc--ccccCCcceeEec
Q 038405 644 DELECLGNQIYEISIT--LGSASALFKI------------NFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIV 707 (863)
Q Consensus 644 ~~L~~l~n~L~~l~~~--~~~~~~l~~l------------~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~ 707 (863)
.-.....+.+..+... .+..+++..- ...+..+++|+.|++++|......+ |.+...+++|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 1111111111111110 0000011000 0114567899999999998876654 8889999999999
Q ss_pred cCcccccCCCCCCCCCCCCCCEEEEecCCCCCCC-cccccCCCcceEeeccCc
Q 038405 708 ECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDL-TWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~ 759 (863)
.|.+..+... .+..+++|+.|+|.+|.....- ..+..+.+|..|.|-.|+
T Consensus 307 ~N~l~~v~~~--~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 307 RNKLEFVSSG--MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cchHHHHHHH--hhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 9998877443 4667899999999999654332 346778888888886554
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.16 E-value=4.2e-09 Score=110.44 Aligned_cols=172 Identities=14% Similarity=0.123 Sum_probs=109.8
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
....++.|+|++|+||||+++.+++... . ..+ ..+|+ +....+..+++..|...++.+.. ..+.......+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~-~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD-Q-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC-C-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 4456899999999999999999998862 1 211 22333 33345778889999998887642 2222333333333
Q ss_pred H-----hccCcEEEEEccccccc--ccccccccC---CCCCCCeEEEEeecch--------hh-------h----cccCC
Q 038405 252 S-----LRRKKFVLLLDDVWERL--DLSKTGVSL---SDCQNGSKIVFTTRSE--------EV-------C----VECLS 302 (863)
Q Consensus 252 ~-----l~~k~~LlVlDdv~~~~--~~~~~~~~l---~~~~~gs~iivTTr~~--------~v-------~----l~~L~ 302 (863)
. ..+++.+||+||++... .++.+.... .+......|++|.... .. + +.+++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 2 25788999999998743 334332211 1122233455555422 10 0 78999
Q ss_pred HHHHHHHHhHhhCccccCC-CCChHHHHHHHHHHcCCChHHHHHHHHHH
Q 038405 303 PEAALDLFRYKVGEDVFNS-HPEIPTLAQAVVGECKGLPLALITIARAM 350 (863)
Q Consensus 303 ~~~a~~Lf~~~~~~~~~~~-~~~~~~~~~~i~~~c~glPLai~~~~~~l 350 (863)
.+|..+++...+....... ..-..+..+.|++.++|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999887764222111 12236889999999999999999888876
No 26
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.09 E-value=4.9e-09 Score=117.69 Aligned_cols=289 Identities=17% Similarity=0.137 Sum_probs=185.6
Q ss_pred ccccCCccccchhhHHHHHHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC-CCHHHHHH
Q 038405 147 VDGMATEKTVGADSKLDEVWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE-GNLEKIQE 224 (863)
Q Consensus 147 ~~~~~~~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~ 224 (863)
+.|.++...|-|..-. +.|.. .+.|++.|..++|.|||||+.+..... ..=..+.|.+.++. -+...+..
T Consensus 13 ~~P~~~~~~v~R~rL~----~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~ 84 (894)
T COG2909 13 VRPVRPDNYVVRPRLL----DRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLS 84 (894)
T ss_pred CCCCCcccccccHHHH----HHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHH
Confidence 3444455667776544 44544 478999999999999999999987633 23347899998875 45777777
Q ss_pred HHHHHcCCCccc-----------ccccChhhHHHHHHHHhc--cCcEEEEEcccccc---cccccccccCCCCCCCeEEE
Q 038405 225 VIRKKLDISDYI-----------WNMKGEYDRAVEILISLR--RKKFVLLLDDVWER---LDLSKTGVSLSDCQNGSKIV 288 (863)
Q Consensus 225 ~i~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~---~~~~~~~~~l~~~~~gs~ii 288 (863)
.++.+++.-... ....+...+...+...+. .++..+||||-.-. .--..+...+.....+-..|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 777777521110 011233344455555444 36899999996532 11222222333445678999
Q ss_pred Eeecchhhh-----------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHh
Q 038405 289 FTTRSEEVC-----------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMS 351 (863)
Q Consensus 289 vTTr~~~v~-----------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~ 351 (863)
||||...-. .=.++.+|+-++|....+.. -.....+.+.+...|-+-|+..++=.++
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 999998654 22478999999998765332 2256788999999999999999888777
Q ss_pred CCCChhhHHHHHHHHhcCCCccCCCCccccc-hhhcccCCCChhhHhHHhhhhcCCCCCCccchHHHHHHHHhcCCCCCc
Q 038405 352 SRRSPREWQYVIDELQRNPSRFAGMGNLVFP-ILRFSYDNLTDDTLKTCFLYCSLFPEENNIRKDELIDLWIGEGFLSDF 430 (863)
Q Consensus 352 ~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~ 430 (863)
...+.+.--..+. +..+.+.. ...--++.||++ +|..++-||+++.-. +.|+.
T Consensus 239 ~~~~~~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~----~eL~~----------- 292 (894)
T COG2909 239 NNTSAEQSLRGLS----------GAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFN----DELCN----------- 292 (894)
T ss_pred CCCcHHHHhhhcc----------chHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhh----HHHHH-----------
Confidence 4333322211111 00011111 111235789997 999999999986421 23332
Q ss_pred cchhHHhhhHHHHHHHHHHhcccc-cCCCCCCeEEechHHHHHHHHhh
Q 038405 431 RSITTARNQGEYIIGSLKLACLLE-SGEYSEDFVKMHDVVRDMALWLA 477 (863)
Q Consensus 431 ~~~~~~~~~~~~~~~~L~~~~ll~-~~~~~~~~~~mHdlv~d~~~~i~ 477 (863)
....++.+..++++|..++++- +-++...+|+.|.++.||.+.--
T Consensus 293 --~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 293 --ALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred --HHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 2233556778899999999865 44455889999999999987544
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.08 E-value=4e-09 Score=117.15 Aligned_cols=282 Identities=12% Similarity=0.058 Sum_probs=161.9
Q ss_pred ccccchhhHHHHHHHhhcc----CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIED----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRK 228 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (863)
+.++||++++++|...+.+ .....+.|+|++|+|||++++.++++.. .....-..+++.+....+...++..|+.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 5689999999999998843 3446688999999999999999998872 2222235677777777778889999999
Q ss_pred HcCCCcccccccChhhHHHHHHHHhc--cCcEEEEEccccccc------ccccccccCCCCCCCeE--EEEeecchhhh-
Q 038405 229 KLDISDYIWNMKGEYDRAVEILISLR--RKKFVLLLDDVWERL------DLSKTGVSLSDCQNGSK--IVFTTRSEEVC- 297 (863)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~l~~~~~gs~--iivTTr~~~v~- 297 (863)
++..........+..+....+.+.++ +++.+||||+++... .+..+.... ....+++ +|.++....+.
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhh
Confidence 88652211123345666677777775 456899999998642 122222211 1122333 56665544322
Q ss_pred ----------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHH----cCCChHHHHHHHHHH--h--CC
Q 038405 298 ----------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGE----CKGLPLALITIARAM--S--SR 353 (863)
Q Consensus 298 ----------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~----c~glPLai~~~~~~l--~--~~ 353 (863)
+.+++.++..+++...+.... ....-..+..+.|++. .|..+.|+..+-.+. + ..
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 778899999999887763210 0001112334444444 455777777764432 1 11
Q ss_pred ---CChhhHHHHHHHHhcCCCccCCCCccccchhhcccCCCChhhHhHHhhhhc-CCC-CCCccchHHHHHH--HHhcCC
Q 038405 354 ---RSPREWQYVIDELQRNPSRFAGMGNLVFPILRFSYDNLTDDTLKTCFLYCS-LFP-EENNIRKDELIDL--WIGEGF 426 (863)
Q Consensus 354 ---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~-~Fp-~~~~i~~~~Li~~--wiaeg~ 426 (863)
-+.+..+.+.+.+.. ....-.+..||.+ .|..+..++ ... ....+....+... .+++.+
T Consensus 267 ~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~~-~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPLH-EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCHH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 245566666554421 1223356788875 343333222 221 1123444444422 222211
Q ss_pred CCCccchhHHhhhHHHHHHHHHHhccccc
Q 038405 427 LSDFRSITTARNQGEYIIGSLKLACLLES 455 (863)
Q Consensus 427 i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 455 (863)
-... .......+++..|...+++..
T Consensus 333 ~~~~----~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 333 GYEP----RTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CCCc----CcHHHHHHHHHHHHhcCCeEE
Confidence 1000 012345667888888888875
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=5.4e-11 Score=128.48 Aligned_cols=106 Identities=22% Similarity=0.159 Sum_probs=50.3
Q ss_pred CCCccEEEeeccccc-----ccchhhhhcCCCccEEeccCCcCcc-------ccchhhhcccccceeeccCCCcc-ccch
Q 038405 520 CPHLQTLLVRFTVLE-----IFPHRFFESMGALKVLDLSYNLDLT-------QLPAEMGALINLRCLNLSNTSIE-ELPS 586 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~-----~l~~~~~~~l~~L~~L~Ls~~~~i~-------~lp~~i~~L~~L~~L~L~~~~i~-~lP~ 586 (863)
+++|+.|.+.++.+. .++. .+...+.|+.|+++++ .+. .++..+..+++|++|++++|.+. ..+.
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 344556666655442 1222 1334455666666555 222 12334455556666666666554 2333
Q ss_pred hhhcccC---ccEEecCCCCCcc----ccchhhhcCC-CCCceeeccCcc
Q 038405 587 EIMYLKN---LKILLLDGMRHFH----LIPARVFSSL-LSLKVFSLFSTE 628 (863)
Q Consensus 587 ~i~~L~~---L~~L~l~~~~~l~----~lp~~~i~~L-~~L~~L~l~~~~ 628 (863)
.+..+.+ |++|++++|.... .+... +..+ ++|+.|++.+|.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCc
Confidence 3443333 6666666654221 11111 3344 566666666554
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.05 E-value=7.3e-10 Score=113.64 Aligned_cols=184 Identities=20% Similarity=0.221 Sum_probs=99.5
Q ss_pred ccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHH--------
Q 038405 155 TVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVI-------- 226 (863)
Q Consensus 155 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i-------- 226 (863)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+... ...+ .++|+...+...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~--~~~~-~~~y~~~~~~~~~~~-~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK--EKGY-KVVYIDFLEESNESS-LRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHHH-HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh--hcCC-cEEEEecccchhhhH-HHHHHHHHHHHH
Confidence 689999999999999887788999999999999999999998761 1111 344554444432222 2222
Q ss_pred ------HHHcCCCcc----cccccChhhHHHHHHHHhc--cCcEEEEEccccccc-ccc-------cccc---cCCCCCC
Q 038405 227 ------RKKLDISDY----IWNMKGEYDRAVEILISLR--RKKFVLLLDDVWERL-DLS-------KTGV---SLSDCQN 283 (863)
Q Consensus 227 ------~~~l~~~~~----~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~~-------~~~~---~l~~~~~ 283 (863)
...+..... .............+.+.+. +++.+||+||+.... ... .+.. ......+
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 111111000 0001122334444545554 356999999997655 111 1111 1122334
Q ss_pred CeEEEEeecchhhh------------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHH
Q 038405 284 GSKIVFTTRSEEVC------------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALIT 345 (863)
Q Consensus 284 gs~iivTTr~~~v~------------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 345 (863)
.+.|+++|. .... +++++.+++++++...+... ... +.-.+..++|...+||.|..|..
T Consensus 157 ~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 444444443 2221 89999999999999865432 111 22366779999999999987754
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.04 E-value=8.7e-11 Score=126.83 Aligned_cols=102 Identities=23% Similarity=0.132 Sum_probs=72.0
Q ss_pred EEeeccccc-ccchhhhhcCCCccEEeccCCcCc-----cccchhhhcccccceeeccCCCccc-------cchhhhccc
Q 038405 526 LLVRFTVLE-IFPHRFFESMGALKVLDLSYNLDL-----TQLPAEMGALINLRCLNLSNTSIEE-------LPSEIMYLK 592 (863)
Q Consensus 526 L~l~~~~l~-~l~~~~~~~l~~L~~L~Ls~~~~i-----~~lp~~i~~L~~L~~L~L~~~~i~~-------lP~~i~~L~ 592 (863)
|+|.++.+. .--...+..+..|++|+++++ .+ ..++..+...++|++|+++++.+.. ++..+.+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 445455433 112244677888999999999 55 3466677788889999999987663 345677889
Q ss_pred CccEEecCCCCCccccchhhhcCCCC---CceeeccCcch
Q 038405 593 NLKILLLDGMRHFHLIPARVFSSLLS---LKVFSLFSTEL 629 (863)
Q Consensus 593 ~L~~L~l~~~~~l~~lp~~~i~~L~~---L~~L~l~~~~~ 629 (863)
+|+.|++++|......+.. +..+.+ |++|++++|.+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 82 GLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred ceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCcc
Confidence 9999999999844334433 555555 99999998764
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=2e-11 Score=129.53 Aligned_cols=212 Identities=22% Similarity=0.270 Sum_probs=123.3
Q ss_pred EEeccCCccccCCCC----CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCC
Q 038405 505 LSLWGSSIEYLPETP----CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580 (863)
Q Consensus 505 l~l~~~~~~~l~~~~----~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~ 580 (863)
+.+++..++.+|... +..-...+++.|.+..+|.. ++.|-.|..|.|+.| .+..+|..+++|..|.||||+.|.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch
Confidence 344444444444332 33344556666666666655 455556666666666 566666666666666666666666
Q ss_pred ccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEee
Q 038405 581 IEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITL 660 (863)
Q Consensus 581 i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~ 660 (863)
+..+|..++.|+ |+.|.+++|+ +..+|.. ++.+..|.+|+.+.|.+..+...- ....++..|....|++..++..+
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~-ig~~~tl~~ld~s~nei~slpsql-~~l~slr~l~vrRn~l~~lp~El 208 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQL-GYLTSLRDLNVRRNHLEDLPEEL 208 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCc-cccCCcc-cccchhHHHhhhhhhhhhhchHHh-hhHHHHHHHHHhhhhhhhCCHHH
Confidence 666666666655 6666666655 6666666 556666666666665544332211 13334444444444444443322
Q ss_pred cCchhhhhhhccccccccccEEEecccCCcccc-cccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCC
Q 038405 661 GSASALFKINFSWKLCSCIKRLTIMHNLDSHSI-DLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCP 736 (863)
Q Consensus 661 ~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 736 (863)
+. -.|..|++++|.....+ .|..|+.|++|-|.+|.+...+.....-+...=.++|+..-|.
T Consensus 209 ~~--------------LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 209 CS--------------LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hC--------------CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 21 14677888888776555 3889999999999999887764432222233445677777773
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.01 E-value=9.1e-08 Score=105.20 Aligned_cols=285 Identities=13% Similarity=0.136 Sum_probs=161.0
Q ss_pred ccccchhhHHHHHHHhhcc----CCceEEEEEcCCCChHHHHhhhhhhccccccCCC---CEEEEEEeCCCCCHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIED----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF---DLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~~~~~~~~~~~~~ 225 (863)
+.++||++++++|..++.+ .....+.|+|++|+|||++++.+++......... -..+|+......+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999999853 3456799999999999999999998752111111 14567777777777889999
Q ss_pred HHHHcC---CCcccccccChhhHHHHHHHHhc--cCcEEEEEccccccc-c----cccccccC-CCCC--CCeEEEEeec
Q 038405 226 IRKKLD---ISDYIWNMKGEYDRAVEILISLR--RKKFVLLLDDVWERL-D----LSKTGVSL-SDCQ--NGSKIVFTTR 292 (863)
Q Consensus 226 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~~~~~l-~~~~--~gs~iivTTr 292 (863)
|++++. .... ....+..+....+.+.+. +++++||||+++... . +..+.... .... ....+|.+|+
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999883 2211 012234455566666663 568899999998652 1 11221110 1111 2234455554
Q ss_pred chhhh-----------------cccCCHHHHHHHHhHhhCc--cccCCCCChHHHHHHHHHHcCCChH-HHHHHHHHH--
Q 038405 293 SEEVC-----------------VECLSPEAALDLFRYKVGE--DVFNSHPEIPTLAQAVVGECKGLPL-ALITIARAM-- 350 (863)
Q Consensus 293 ~~~v~-----------------l~~L~~~~a~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~l-- 350 (863)
..... +.+++.++..+++..++.. .....+++..+....++....|.|- |+..+-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33221 7788999999999887631 1111222333445556667778874 433332221
Q ss_pred h--C---CCChhhHHHHHHHHhcCCCccCCCCccccchhhcccCCCChhhHhHHhhhhcCC--CCCCccchHHHHHHH--
Q 038405 351 S--S---RRSPREWQYVIDELQRNPSRFAGMGNLVFPILRFSYDNLTDDTLKTCFLYCSLF--PEENNIRKDELIDLW-- 421 (863)
Q Consensus 351 ~--~---~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~F--p~~~~i~~~~Li~~w-- 421 (863)
. . .-+.+..+.+.+.+.. ....-++..||.+ .|..+..++.. .++..+....+...+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 1234444444443321 1223355678875 55444433311 133445555555533
Q ss_pred HhcCCCCCccchhHHhhhHHHHHHHHHHhcccccC
Q 038405 422 IGEGFLSDFRSITTARNQGEYIIGSLKLACLLESG 456 (863)
Q Consensus 422 iaeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 456 (863)
+++.+-.. ........+++..|...++++..
T Consensus 320 ~~~~~~~~----~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDIGVD----PLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCC----CCcHHHHHHHHHHHHhcCCeEEE
Confidence 12211100 11235567788899999998864
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.96 E-value=1.4e-08 Score=108.59 Aligned_cols=256 Identities=14% Similarity=0.104 Sum_probs=144.4
Q ss_pred ccccchhhHHHHHHHhhcc-----CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIED-----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIR 227 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (863)
.+|||+++.++++..++.. .....+.++|++|+|||+||+.+++.. ...+ ..+..+.......+ ...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhH-HHHH
Confidence 4689999999999988852 345668899999999999999999876 2222 11221111112222 2222
Q ss_pred HHcCCCccc----ccccChhhHHHHHHHHhccCcEEEEEcccccccccccccccCCCCCCCeEEEEeecchhhh------
Q 038405 228 KKLDISDYI----WNMKGEYDRAVEILISLRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVC------ 297 (863)
Q Consensus 228 ~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~~v~------ 297 (863)
..++...-- .+..+ ......+...+.+.+..+|+|+..+...+.. .+| +.+-|..||+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhh
Confidence 333221100 00001 1223345556666777788877655544321 122 244555666653221
Q ss_pred ------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHhC------C--CChhhHHHHH
Q 038405 298 ------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMSS------R--RSPREWQYVI 363 (863)
Q Consensus 298 ------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~------~--~~~~~w~~~~ 363 (863)
+++++.++..+++.+.+...... -..+....|++.|+|.|-.+..++..+.. . .+.+..+.
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~---~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~-- 224 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVE---IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK-- 224 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH--
Confidence 78999999999999887643222 22567789999999999666555443210 0 11111111
Q ss_pred HHHhcCCCccCCCCccccchhhcccCCCChhhHhHHhh-hhcCCCCCCccchHHHHHHHHhcCCCCCccchhHHhhhHHH
Q 038405 364 DELQRNPSRFAGMGNLVFPILRFSYDNLTDDTLKTCFL-YCSLFPEENNIRKDELIDLWIGEGFLSDFRSITTARNQGEY 442 (863)
Q Consensus 364 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~ 442 (863)
....+...|..++.. .+..+. ..+.++.+ .++.+.+.... | ......+.
T Consensus 225 ----------------~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~ 274 (305)
T TIGR00635 225 ----------------ALEMLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIED 274 (305)
T ss_pred ----------------HHHHhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHH
Confidence 222245567888874 555554 44566533 44444433221 1 12234555
Q ss_pred HHH-HHHHhcccccCC
Q 038405 443 IIG-SLKLACLLESGE 457 (863)
Q Consensus 443 ~~~-~L~~~~ll~~~~ 457 (863)
.++ .|++++|++...
T Consensus 275 ~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 275 VYEPYLLQIGFLQRTP 290 (305)
T ss_pred hhhHHHHHcCCcccCC
Confidence 577 699999997543
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.92 E-value=1.5e-08 Score=108.81 Aligned_cols=265 Identities=13% Similarity=0.089 Sum_probs=144.4
Q ss_pred ccccchhhHHHHHHHhhcc-----CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIED-----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIR 227 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (863)
.+|+|+++.++.+..++.. ...+.+.|+|++|+||||||+.+++.. ...+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecc-cccChHHHHHHH
Confidence 5799999999998877742 345678899999999999999999987 2222 112211 111122233333
Q ss_pred HHcCCCcccc-cc-cC-hhhHHHHHHHHhccCcEEEEEcccccccccccccccCCCCCCCeEEEEeecchhhh-------
Q 038405 228 KKLDISDYIW-NM-KG-EYDRAVEILISLRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVC------- 297 (863)
Q Consensus 228 ~~l~~~~~~~-~~-~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~~v~------- 297 (863)
..+....-.+ +. .. .......+...+.+.+..+|+|+..+...+. ..+| +.+-|..||+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~---~~~li~at~~~~~l~~~L~sRf 171 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP---PFTLIGATTRAGLLTSPLRDRF 171 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccccee---ecCC---CceEEeecCCcccCCHHHHHhc
Confidence 3332211000 00 00 0112223445556666677777655432221 1111 234555666643222
Q ss_pred -----cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHhCCCChhhHHHHHHHHhcCCCc
Q 038405 298 -----VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMSSRRSPREWQYVIDELQRNPSR 372 (863)
Q Consensus 298 -----l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~ 372 (863)
+++++.++..+++...+....... .++....|++.|+|.|-.+..+...+. .|.... ......
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~ 239 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVIT 239 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCC
Confidence 789999999999998876543222 256789999999999965544444321 111110 000000
Q ss_pred cCCCCccccchhhcccCCCChhhHhHHhh-hhcCCCCCCccchHHHHHHHHhcCCCCCccchhHHhhhHHHHHH-HHHHh
Q 038405 373 FAGMGNLVFPILRFSYDNLTDDTLKTCFL-YCSLFPEENNIRKDELIDLWIGEGFLSDFRSITTARNQGEYIIG-SLKLA 450 (863)
Q Consensus 373 ~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~~-~L~~~ 450 (863)
. ..-......+...|..|++. .+..+. ....|+.+ .+..+.+.... .......++.++ .|++.
T Consensus 240 ~-~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l------------g~~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 240 K-EIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL------------GEERDTIEDVYEPYLIQQ 304 (328)
T ss_pred H-HHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH------------CCCcchHHHHhhHHHHHc
Confidence 0 00012334456677788875 566664 66667655 45555543321 111233444466 78999
Q ss_pred cccccCC
Q 038405 451 CLLESGE 457 (863)
Q Consensus 451 ~ll~~~~ 457 (863)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=4.9e-09 Score=99.38 Aligned_cols=104 Identities=30% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCCccEEEeecccccccchhhhh-cCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhh-hcccCccEE
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFE-SMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEI-MYLKNLKIL 597 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~-~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i-~~L~~L~~L 597 (863)
+.+++.|+|.+|.+..+.. ++ .+.+|++|+|++| .++.++ .+..+++|++|++++|.|+.++..+ ..+++|++|
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 3345555555555444432 22 3455555555555 455443 2445555555555555555554433 245555555
Q ss_pred ecCCCCCccccch-hhhcCCCCCceeeccCcc
Q 038405 598 LLDGMRHFHLIPA-RVFSSLLSLKVFSLFSTE 628 (863)
Q Consensus 598 ~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~ 628 (863)
++++|. +..+.. ..+..+++|++|++.+|.
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence 555554 222211 114445555555555544
No 36
>PF05729 NACHT: NACHT domain
Probab=98.81 E-value=1.9e-08 Score=97.01 Aligned_cols=131 Identities=21% Similarity=0.235 Sum_probs=82.6
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCC----CCEEEEEEeCCCCCHH---HHHHHHHHHcCCCcccccccChhhHHH
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHC----FDLVIFVAVSKEGNLE---KIQEVIRKKLDISDYIWNMKGEYDRAV 247 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 247 (863)
|++.|+|.+|+||||+++.++.+.. .... +...+|+..+...... .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 5899999999999999999998773 2222 4567777766554432 34444444432211 11111
Q ss_pred HHHHH-hccCcEEEEEcccccccc---------ccccc-ccCCC-CCCCeEEEEeecchhhh-------------cccCC
Q 038405 248 EILIS-LRRKKFVLLLDDVWERLD---------LSKTG-VSLSD-CQNGSKIVFTTRSEEVC-------------VECLS 302 (863)
Q Consensus 248 ~l~~~-l~~k~~LlVlDdv~~~~~---------~~~~~-~~l~~-~~~gs~iivTTr~~~v~-------------l~~L~ 302 (863)
.+... -+.++++||+|++++... +.++. ..++. ..+++++|||||..... +.+++
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 12222 257899999999987532 11222 12222 35689999999987762 78889
Q ss_pred HHHHHHHHhHhh
Q 038405 303 PEAALDLFRYKV 314 (863)
Q Consensus 303 ~~~a~~Lf~~~~ 314 (863)
+++..+++.+..
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 888888887654
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=5e-09 Score=99.31 Aligned_cols=122 Identities=27% Similarity=0.290 Sum_probs=55.3
Q ss_pred cceEEEeccCCccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhh-hcccccceeecc
Q 038405 501 EDFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEM-GALINLRCLNLS 577 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~L~~L~~L~L~ 577 (863)
+.+.|++.++.++.+.... +.+|++|++++|.++.++. +..++.|++|++++| .++.++..+ ..+++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECc
Confidence 5688999999998887654 7899999999999998875 788999999999999 888887656 469999999999
Q ss_pred CCCccccc--hhhhcccCccEEecCCCCCccccc---hhhhcCCCCCceeeccC
Q 038405 578 NTSIEELP--SEIMYLKNLKILLLDGMRHFHLIP---ARVFSSLLSLKVFSLFS 626 (863)
Q Consensus 578 ~~~i~~lP--~~i~~L~~L~~L~l~~~~~l~~lp---~~~i~~L~~L~~L~l~~ 626 (863)
+|+|..+- ..+..+++|+.|++.+|+. ...+ .-++..+++|+.||...
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEE
Confidence 99998764 3477899999999999984 3333 24577899999998753
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2e-09 Score=111.35 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=51.3
Q ss_pred cccceEEEeccCCccccCC---CC-CCCccEEEeecccccccc--hhhhhcCCCccEEeccCCcCccccchh--hhcccc
Q 038405 499 WREDFRLSLWGSSIEYLPE---TP-CPHLQTLLVRFTVLEIFP--HRFFESMGALKVLDLSYNLDLTQLPAE--MGALIN 570 (863)
Q Consensus 499 ~~~~~~l~l~~~~~~~l~~---~~-~~~Lr~L~l~~~~l~~l~--~~~~~~l~~L~~L~Ls~~~~i~~lp~~--i~~L~~ 570 (863)
.++++.+++.++.+...+. .. |++++.|+|+.|-+..+. ..+...+++|+.|+|+.| .+...-++ -..+.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhh
Confidence 4466667776666555442 11 666666666666332221 123455666666666665 22221111 124555
Q ss_pred cceeeccCCCcc--ccchhhhcccCccEEecCCC
Q 038405 571 LRCLNLSNTSIE--ELPSEIMYLKNLKILLLDGM 602 (863)
Q Consensus 571 L~~L~L~~~~i~--~lP~~i~~L~~L~~L~l~~~ 602 (863)
|+.|.|+.|+++ .+-.....+++|+.|+|..|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 566666666554 12222334555555555555
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.9e-09 Score=107.90 Aligned_cols=204 Identities=21% Similarity=0.224 Sum_probs=137.3
Q ss_pred CCCccEEEeecccccccch-hhhhcCCCccEEeccCCcCcc---ccchhhhcccccceeeccCCCccccchh--hhcccC
Q 038405 520 CPHLQTLLVRFTVLEIFPH-RFFESMGALKVLDLSYNLDLT---QLPAEMGALINLRCLNLSNTSIEELPSE--IMYLKN 593 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~-~~~~~l~~L~~L~Ls~~~~i~---~lp~~i~~L~~L~~L~L~~~~i~~lP~~--i~~L~~ 593 (863)
+.+|+...|.++.+...+. .....|++++.||||.| .+. .+-.....|++|+.|+|+.|.+...-++ -..+++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 7788888888886655553 34677889999999988 433 3334456888899999998877644333 235778
Q ss_pred ccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccc
Q 038405 594 LKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSW 673 (863)
Q Consensus 594 L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~ 673 (863)
|+.|.++.|.....--.......++|+.|++..|........ +.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~------------------------------------~~ 242 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT------------------------------------ST 242 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc------------------------------------hh
Confidence 888888888733222222344667778887776531110000 01
Q ss_pred cccccccEEEecccCCccccc---ccccCCcceeEeccCcccccC-CCC---CCCCCCCCCCEEEEecCCC--CCCCccc
Q 038405 674 KLCSCIKRLTIMHNLDSHSID---LRNMMHLETLNIVECSLERVD-PTF---NGWTNFHNLHHLSIRVCPV--IRDLTWI 744 (863)
Q Consensus 674 ~~~~~L~~L~l~~~~~~~~~~---l~~~~~L~~L~l~~~~l~~~~-~~~---~~~~~l~~L~~L~L~~~~~--~~~l~~l 744 (863)
.-++.|+.|+|++|....... ...++.|+.|.++.|++.++. +.. .-...+++|++|++..|+. ...+..+
T Consensus 243 ~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 243 KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL 322 (505)
T ss_pred hhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence 123468889999998876663 678899999999999987772 211 0124689999999999976 4455556
Q ss_pred ccCCCcceEeeccCcc
Q 038405 745 REAPNLQFLSLVNCQA 760 (863)
Q Consensus 745 ~~l~~L~~L~L~~~~~ 760 (863)
..+++|+.|.+..++.
T Consensus 323 ~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYL 338 (505)
T ss_pred hccchhhhhhcccccc
Confidence 6788888888776654
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.64 E-value=7.5e-10 Score=117.83 Aligned_cols=152 Identities=26% Similarity=0.338 Sum_probs=86.0
Q ss_pred EEEeccCCccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCc
Q 038405 504 RLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSI 581 (863)
Q Consensus 504 ~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i 581 (863)
...++.|.+..+|... |-.|..+.+..|.+..+|.. ++.+..|.+|||+.| .+..+|..++.|+ |+.|-+++|++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCcc
Confidence 3445555566665554 55666666666666666654 556666666666666 6666666666553 66666666666
Q ss_pred cccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeec
Q 038405 582 EELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLG 661 (863)
Q Consensus 582 ~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~ 661 (863)
+.+|..++.+..|.+||.+.|. +..+|.. ++.+.+|+.|.+..|++..+...-. .-.|-.|+..+|++..+++.+.
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~~lp~El~--~LpLi~lDfScNkis~iPv~fr 231 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLEDLPEELC--SLPLIRLDFSCNKISYLPVDFR 231 (722)
T ss_pred ccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhhhCCHHHh--CCceeeeecccCceeecchhhh
Confidence 6666666666666666666665 5556655 5666666666666655544322111 1223334444444444444444
Q ss_pred C
Q 038405 662 S 662 (863)
Q Consensus 662 ~ 662 (863)
.
T Consensus 232 ~ 232 (722)
T KOG0532|consen 232 K 232 (722)
T ss_pred h
Confidence 3
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=3.2e-08 Score=110.03 Aligned_cols=102 Identities=29% Similarity=0.393 Sum_probs=45.1
Q ss_pred CCccEEEeecccccccchhhhhcCC-CccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEec
Q 038405 521 PHLQTLLVRFTVLEIFPHRFFESMG-ALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 521 ~~Lr~L~l~~~~l~~l~~~~~~~l~-~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
+.+..|.+.++.+..+++. ...+. +|+.|+++++ .+..+|..++.+++|+.|++++|.+..+|...+.+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 3444444444444444432 22221 4444444444 4444444444444444444444444444444444444444444
Q ss_pred CCCCCccccchhhhcCCCCCceeeccC
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFS 626 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~ 626 (863)
++|. +..+|.. ++.+..|++|.+.+
T Consensus 194 s~N~-i~~l~~~-~~~~~~L~~l~~~~ 218 (394)
T COG4886 194 SGNK-ISDLPPE-IELLSALEELDLSN 218 (394)
T ss_pred cCCc-cccCchh-hhhhhhhhhhhhcC
Confidence 4444 4444433 23333344444443
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=7.2e-09 Score=101.69 Aligned_cols=130 Identities=27% Similarity=0.335 Sum_probs=106.2
Q ss_pred ccccccceEEEeccCCccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccce
Q 038405 496 ADSWREDFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRC 573 (863)
Q Consensus 496 ~~~~~~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 573 (863)
...|..+..+.+++|.++++..+. .|.+|.|++++|.+..+.. +..+++|..||||+| .+.++-..-.+|-|.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence 456778888999999999988876 8999999999998887765 778999999999999 66666544457788899
Q ss_pred eeccCCCccccchhhhcccCccEEecCCCCCccccch-hhhcCCCCCceeeccCcchh
Q 038405 574 LNLSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPA-RVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 574 L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 630 (863)
|.|++|.|..+ +++++|.+|..||+++|+ +..+.. .-||+|+.|++|.+.+|.+.
T Consensus 357 L~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 99999998888 468999999999999987 554432 22889999999999887654
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=4.3e-08 Score=109.08 Aligned_cols=104 Identities=32% Similarity=0.412 Sum_probs=76.4
Q ss_pred EEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhccc-ccceeeccCCCccccchhhhcccCccEEecCCCC
Q 038405 525 TLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALI-NLRCLNLSNTSIEELPSEIMYLKNLKILLLDGMR 603 (863)
Q Consensus 525 ~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~-~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~ 603 (863)
.+.+..+.+...... ...++.+..|++.++ .+..+|...+.+. +|+.|++++|.+..+|..++.+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchh-hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 455555554222222 445577888888888 7888888777774 8888888888888888778888888888888887
Q ss_pred CccccchhhhcCCCCCceeeccCcchhhh
Q 038405 604 HFHLIPARVFSSLLSLKVFSLFSTELIEL 632 (863)
Q Consensus 604 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 632 (863)
+..+|.. .+.+++|+.|++++|.+..+
T Consensus 175 -l~~l~~~-~~~~~~L~~L~ls~N~i~~l 201 (394)
T COG4886 175 -LSDLPKL-LSNLSNLNNLDLSGNKISDL 201 (394)
T ss_pred -hhhhhhh-hhhhhhhhheeccCCccccC
Confidence 7777765 44788888888888765543
No 44
>PRK06893 DNA replication initiation factor; Validated
Probab=98.60 E-value=3.4e-07 Score=92.66 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=85.3
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
...+.+.|||.+|+|||+||+.+++... .....+.|+.+.... ... ..+.+
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~-----------------------~~~~~ 87 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFS-----------------------PAVLE 87 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhh-----------------------HHHHh
Confidence 3446789999999999999999999862 223345677653110 000 01111
Q ss_pred HhccCcEEEEEcccccc---ccccc-ccccCCC-CCCCeEEEEeecch----------hhh----------cccCCHHHH
Q 038405 252 SLRRKKFVLLLDDVWER---LDLSK-TGVSLSD-CQNGSKIVFTTRSE----------EVC----------VECLSPEAA 306 (863)
Q Consensus 252 ~l~~k~~LlVlDdv~~~---~~~~~-~~~~l~~-~~~gs~iivTTr~~----------~v~----------l~~L~~~~a 306 (863)
.++ +.-+||+||+|.. ..|+. +...+.. ...|+.+||+|.+. .+. +++++.++.
T Consensus 88 ~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 88 NLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred hcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 222 2348999999863 34442 2222221 12355665544433 111 788999999
Q ss_pred HHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 307 LDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 307 ~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
++++.+.+....... -+++..-|++.+.|..-++..+
T Consensus 167 ~~iL~~~a~~~~l~l---~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 167 IIVLQRNAYQRGIEL---SDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHH
Confidence 999998886443222 2677788888888776554443
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.57 E-value=5.1e-09 Score=107.80 Aligned_cols=284 Identities=19% Similarity=0.200 Sum_probs=164.1
Q ss_pred CccEEEeecc-cccccc-hhhhhcCCCccEEeccCCcCcccc-chhh-hcccccceeeccCC-Ccccc--chhhhcccCc
Q 038405 522 HLQTLLVRFT-VLEIFP-HRFFESMGALKVLDLSYNLDLTQL-PAEM-GALINLRCLNLSNT-SIEEL--PSEIMYLKNL 594 (863)
Q Consensus 522 ~Lr~L~l~~~-~l~~l~-~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i-~~L~~L~~L~L~~~-~i~~l--P~~i~~L~~L 594 (863)
.|+.|.+.|+ ....-+ ..+-..++++..|++.+|..++.- -.++ ..+..|++|++..| .|+.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5778888887 222111 123457888888899888655421 1222 36788899999886 66532 2224467888
Q ss_pred cEEecCCCCCccccc-hhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhccc---ceeeEEeecCchhh--hh
Q 038405 595 KILLLDGMRHFHLIP-ARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQ---IYEISITLGSASAL--FK 668 (863)
Q Consensus 595 ~~L~l~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~---L~~l~~~~~~~~~l--~~ 668 (863)
++|+++.|..+..-- .....++.+|+.+...||.-. .++.|...... +-++. ...+..+ ..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~-----------~le~l~~~~~~~~~i~~ln--l~~c~~lTD~~ 285 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL-----------ELEALLKAAAYCLEILKLN--LQHCNQLTDED 285 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-----------cHHHHHHHhccChHhhccc--hhhhccccchH
Confidence 999998887544310 011345555666655554321 11122111111 11111 1111111 11
Q ss_pred hhccccccccccEEEecccCCccccc----ccccCCcceeEeccCc-ccccCCCCCCCCCCCCCCEEEEecCCCCCCC--
Q 038405 669 INFSWKLCSCIKRLTIMHNLDSHSID----LRNMMHLETLNIVECS-LERVDPTFNGWTNFHNLHHLSIRVCPVIRDL-- 741 (863)
Q Consensus 669 l~~~~~~~~~L~~L~l~~~~~~~~~~----l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-- 741 (863)
+...-..+..|+.|..+++....... -.+..+|+.|-+++|. +++..... -..+.+.|+.+++..|....+-
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~-l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM-LGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh-hhcCChhhhhhcccccceehhhhH
Confidence 22223346678888888877654443 3456789999999887 44442221 1236788999999888655442
Q ss_pred cc-cccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCc-cCCCCccEEeeccCCCCC
Q 038405 742 TW-IREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGT-MPFPSLQNVSVTNCPNLR 819 (863)
Q Consensus 742 ~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~-~~~~~L~~L~i~~C~~L~ 819 (863)
.. -.++|.|+.|.|++|..+.+. |...+.....+...|..+.|.+||.+..-.... ..+++|+.+++.+|....
T Consensus 365 ~sls~~C~~lr~lslshce~itD~----gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDE----GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhh----hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 12 246889999999998876543 111222344567788888899988876543322 246788888888877766
Q ss_pred CCCC
Q 038405 820 ELPF 823 (863)
Q Consensus 820 ~lp~ 823 (863)
+=|.
T Consensus 441 k~~i 444 (483)
T KOG4341|consen 441 KEAI 444 (483)
T ss_pred hhhh
Confidence 5443
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=3.8e-07 Score=101.11 Aligned_cols=167 Identities=17% Similarity=0.142 Sum_probs=101.9
Q ss_pred ccccchhhHHHH---HHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 153 EKTVGADSKLDE---VWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
+++||.+..+.. +..++.......+.++|++|+||||+|+.+++.. ...| +.++.......-.+.+.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii~- 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVIE- 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHHH-
Confidence 568899888766 8888877777889999999999999999999876 3333 222221111111111211
Q ss_pred cCCCcccccccChhhHHHHHHHH-hccCcEEEEEccccccc--ccccccccCCCCCCCeEEEE--eecchhhh-------
Q 038405 230 LDISDYIWNMKGEYDRAVEILIS-LRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVF--TTRSEEVC------- 297 (863)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iiv--TTr~~~v~------- 297 (863)
..... ..+++.+|++|+++... ..+.+...+. .|..++| ||.+....
T Consensus 83 ------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 83 ------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred ------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhc
Confidence 11111 24578899999998642 2333332222 2444444 34443322
Q ss_pred ------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHH
Q 038405 298 ------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARA 349 (863)
Q Consensus 298 ------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 349 (863)
+.+++.++...++.+.+.........-..+..+.|++.|+|.|..+..+...
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7889999999999886532110000223567888999999998766544433
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=2e-08 Score=98.66 Aligned_cols=133 Identities=21% Similarity=0.248 Sum_probs=91.5
Q ss_pred cccccceeeccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhh
Q 038405 567 ALINLRCLNLSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDEL 646 (863)
Q Consensus 567 ~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 646 (863)
....|..||||+|.|+.+-+++.-+++++.|+++.|. +..+.. +..|++|++|++++|.+..+.-.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gw----------- 347 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLLAECVGW----------- 347 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh--hhhcccceEeecccchhHhhhhh-----------
Confidence 3567889999999999999999999999999999987 444432 77889999999998765432110
Q ss_pred hhhcccceeeEEeecCchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCC
Q 038405 647 ECLGNQIYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHN 726 (863)
Q Consensus 647 ~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~ 726 (863)
. ..+.+++.|.+++|.......++.+-+|..|++++|+++.+.... +++++|.
T Consensus 348 ---h-----------------------~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~-~IG~LPC 400 (490)
T KOG1259|consen 348 ---H-----------------------LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVN-HIGNLPC 400 (490)
T ss_pred ---H-----------------------hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhc-ccccccH
Confidence 0 012245566666665544444666677778888888776664332 5567777
Q ss_pred CCEEEEecCCCCCC
Q 038405 727 LHHLSIRVCPVIRD 740 (863)
Q Consensus 727 L~~L~L~~~~~~~~ 740 (863)
|+.|.|.+|+....
T Consensus 401 LE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 401 LETLRLTGNPLAGS 414 (490)
T ss_pred HHHHhhcCCCcccc
Confidence 77777777765433
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.55 E-value=4.3e-07 Score=94.00 Aligned_cols=160 Identities=21% Similarity=0.219 Sum_probs=98.2
Q ss_pred ccccchhhHH---HHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 153 EKTVGADSKL---DEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 153 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
+++||.+..+ .-|..++..+.+...-+||++|+||||||+.++... ...| ..++...+-.+-++.+++.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDLREIIEE 95 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHHHHHHHH
Confidence 3455554433 224445566788888999999999999999999876 3444 3333332222222222221
Q ss_pred cCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCeEEEE--eecchhhh--------
Q 038405 230 LDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVF--TTRSEEVC-------- 297 (863)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iiv--TTr~~~v~-------- 297 (863)
. . .....+++.+|++|.|..-+ +-+ ..+|.-.+|.-|+| ||.|+...
T Consensus 96 a----------------~--~~~~~gr~tiLflDEIHRfnK~QQD---~lLp~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 96 A----------------R--KNRLLGRRTILFLDEIHRFNKAQQD---ALLPHVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred H----------------H--HHHhcCCceEEEEehhhhcChhhhh---hhhhhhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 1 0 12334899999999997532 222 22455567887776 77777654
Q ss_pred -----cccCCHHHHHHHHhHhhCccc--cC-CCCCh-HHHHHHHHHHcCCChH
Q 038405 298 -----VECLSPEAALDLFRYKVGEDV--FN-SHPEI-PTLAQAVVGECKGLPL 341 (863)
Q Consensus 298 -----l~~L~~~~a~~Lf~~~~~~~~--~~-~~~~~-~~~~~~i~~~c~glPL 341 (863)
+++|+.+|-.+++.+.+.... .. ....+ ++....++..++|---
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 899999999999988442211 11 01112 4566778888888653
No 49
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.51 E-value=7.7e-07 Score=106.31 Aligned_cols=299 Identities=15% Similarity=0.156 Sum_probs=167.8
Q ss_pred cccchhhHHHHHHHhhcc---CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC---HHHHHHHHH
Q 038405 154 KTVGADSKLDEVWGCIED---QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN---LEKIQEVIR 227 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~---~~~~~~~i~ 227 (863)
+++||+.+++.|...+.+ ....++.+.|..|||||+|+++|.....+.++.|-...+-....+.. ..+.+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 368999999999998854 56679999999999999999999988733323332222222222222 223333443
Q ss_pred HHc-------------------CCCccc------------------cc--ccChhhH-----HHHHHHHh-ccCcEEEEE
Q 038405 228 KKL-------------------DISDYI------------------WN--MKGEYDR-----AVEILISL-RRKKFVLLL 262 (863)
Q Consensus 228 ~~l-------------------~~~~~~------------------~~--~~~~~~~-----~~~l~~~l-~~k~~LlVl 262 (863)
.++ +..... .+ ......+ ...+.... +.|+.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 333 111000 00 0001111 11222222 356999999
Q ss_pred cccccc-cc-cc---cccccCCC-CCCCeEEEEeecchhh--------------hcccCCHHHHHHHHhHhhCccccCCC
Q 038405 263 DDVWER-LD-LS---KTGVSLSD-CQNGSKIVFTTRSEEV--------------CVECLSPEAALDLFRYKVGEDVFNSH 322 (863)
Q Consensus 263 Ddv~~~-~~-~~---~~~~~l~~-~~~gs~iivTTr~~~v--------------~l~~L~~~~a~~Lf~~~~~~~~~~~~ 322 (863)
||+.-. .. +. .+....+- .-....|..+...... .+.||+..+...+.....+...
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 999432 11 11 11111100 0001112222211111 1999999999999988876532
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHhCC------CChhhHHHHHHHHhcCCCccCCCCccccchhhcccCCCChhhH
Q 038405 323 PEIPTLAQAVVGECKGLPLALITIARAMSSR------RSPREWQYVIDELQRNPSRFAGMGNLVFPILRFSYDNLTDDTL 396 (863)
Q Consensus 323 ~~~~~~~~~i~~~c~glPLai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 396 (863)
....+..+.|+++.+|.|+.+..+-..+... .+...|..-..++... +..+.+...+..-.+.||.. .
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~-----~~~~~vv~~l~~rl~kL~~~-t 310 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL-----ATTDAVVEFLAARLQKLPGT-T 310 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc-----hhhHHHHHHHHHHHhcCCHH-H
Confidence 2346789999999999999999999888773 3455565544333222 11123555677888999996 8
Q ss_pred hHHhhhhcCCCCCCccchHHHHHHHHhcCCCCCccchhHHhhhHHHHHHHHHHhcccccCC-----CCCCeE---EechH
Q 038405 397 KTCFLYCSLFPEENNIRKDELIDLWIGEGFLSDFRSITTARNQGEYIIGSLKLACLLESGE-----YSEDFV---KMHDV 468 (863)
Q Consensus 397 k~cfl~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-----~~~~~~---~mHdl 468 (863)
|..+-..|++-..+ +.+.|...+-. .....+....+.|....++...+ ...... -.||.
T Consensus 311 ~~Vl~~AA~iG~~F--~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 311 REVLKAAACIGNRF--DLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHHhCccC--CHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 99999999986544 45555444311 22334445555555555554221 011111 35777
Q ss_pred HHHHHHH
Q 038405 469 VRDMALW 475 (863)
Q Consensus 469 v~d~~~~ 475 (863)
+++.|-.
T Consensus 378 vqqaaY~ 384 (849)
T COG3899 378 VQQAAYN 384 (849)
T ss_pred HHHHHhc
Confidence 7777643
No 50
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.49 E-value=7.7e-07 Score=83.69 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=73.8
Q ss_pred cchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcc
Q 038405 156 VGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDY 235 (863)
Q Consensus 156 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 235 (863)
+|++..++.+...+.....+.+.|+|.+|+||||+|+.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47888999999998776778899999999999999999998862 222345666655443322211111000
Q ss_pred cccccChhhHHHHHHHHhccCcEEEEEcccccc-----cccccccccCCC---CCCCeEEEEeecch
Q 038405 236 IWNMKGEYDRAVEILISLRRKKFVLLLDDVWER-----LDLSKTGVSLSD---CQNGSKIVFTTRSE 294 (863)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~~~~l~~---~~~gs~iivTTr~~ 294 (863)
............++.+||+||++.. ..+......+.. ...+..||+||...
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111223456789999999853 122222222211 13578888888764
No 51
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.48 E-value=1.8e-05 Score=91.53 Aligned_cols=193 Identities=15% Similarity=0.063 Sum_probs=115.0
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCC---CEEEEEEeCCC---CCHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF---DLVIFVAVSKE---GNLEKIQEVI 226 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~~~~---~~~~~~~~~i 226 (863)
+.++|++..+..+.+.+.......+.|+|.+|+||||+|+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 5688999999998888876667789999999999999999998765 212222 12345544321 1222221111
Q ss_pred ---------------HHHcCCCccc-------------c-c-ccChhhHHHHHHHHhccCcEEEEEcccccc--cccccc
Q 038405 227 ---------------RKKLDISDYI-------------W-N-MKGEYDRAVEILISLRRKKFVLLLDDVWER--LDLSKT 274 (863)
Q Consensus 227 ---------------~~~l~~~~~~-------------~-~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~ 274 (863)
+...+..... . + ..=....+..+.+.++++++.++-|+.|.. ..|..+
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 1111211000 0 0 001123466788888889999997777653 457777
Q ss_pred cccCCCCCCCeEEEE--eecchhhh------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 275 GVSLSDCQNGSKIVF--TTRSEEVC------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 275 ~~~l~~~~~gs~iiv--TTr~~~v~------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
...+....+...|+| ||++.... +.+++.+|.++++...+....... ..++.+.|.+.+..-+
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~gR 389 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIEGR 389 (615)
T ss_pred hhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCcHH
Confidence 666655555555655 56654322 678899999999988765322111 1445556666655546
Q ss_pred HHHHHHHHH
Q 038405 341 LALITIARA 349 (863)
Q Consensus 341 Lai~~~~~~ 349 (863)
-|+..++..
T Consensus 390 raln~L~~~ 398 (615)
T TIGR02903 390 KAVNILADV 398 (615)
T ss_pred HHHHHHHHH
Confidence 666655544
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=98.47 E-value=8e-06 Score=92.49 Aligned_cols=170 Identities=19% Similarity=0.256 Sum_probs=103.3
Q ss_pred ccccchhhHHHHHHHhhcc----CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIED----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRK 228 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (863)
.+++|.++.++++.+|+.. ...+.+.|+|++|+||||+|+.+++.. . |+ .+-++.++......+ ..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el---~--~~-~ielnasd~r~~~~i-~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY---G--WE-VIELNASDQRTADVI-ERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc---C--CC-EEEEcccccccHHHH-HHHHH
Confidence 5689999999999999854 226789999999999999999999876 1 22 233444443333322 22222
Q ss_pred HcCCCcccccccChhhHHHHHHHHhc-cCcEEEEEcccccccc------cccccccCCCCCCCeEEEEeecchh------
Q 038405 229 KLDISDYIWNMKGEYDRAVEILISLR-RKKFVLLLDDVWERLD------LSKTGVSLSDCQNGSKIVFTTRSEE------ 295 (863)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~------~~~~~~~l~~~~~gs~iivTTr~~~------ 295 (863)
...... .+. .++-+||+|+++.... +..+...+. ..+..||+|+.+..
T Consensus 87 ~~~~~~-----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 87 EAATSG-----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HhhccC-----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 211110 011 3678999999986422 333322222 22344666664321
Q ss_pred hh-------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHh
Q 038405 296 VC-------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMS 351 (863)
Q Consensus 296 v~-------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~ 351 (863)
+. +.+++.++....+...+.......+ .+....|++.++|-.-.+......+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 11 6778888888887776643332222 56788999999987655544333333
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=1.3e-07 Score=73.54 Aligned_cols=58 Identities=38% Similarity=0.547 Sum_probs=27.9
Q ss_pred CccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceeeccCCC
Q 038405 522 HLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLNLSNTS 580 (863)
Q Consensus 522 ~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 580 (863)
+|++|++++|.+..+|...|..+++|++|++++| .+..+|. .|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555555555555444555555555555544 3333332 34444555555544443
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.45 E-value=2.4e-08 Score=102.92 Aligned_cols=276 Identities=19% Similarity=0.148 Sum_probs=151.4
Q ss_pred cceEEEeccCCccccC---CCC--CCCccEEEeeccc-ccccc-hhhhhcCCCccEEeccCCcCcccc--chhhhccccc
Q 038405 501 EDFRLSLWGSSIEYLP---ETP--CPHLQTLLVRFTV-LEIFP-HRFFESMGALKVLDLSYNLDLTQL--PAEMGALINL 571 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~---~~~--~~~Lr~L~l~~~~-l~~l~-~~~~~~l~~L~~L~Ls~~~~i~~l--p~~i~~L~~L 571 (863)
.++.+++.+..-.... ... ||++..|.+.+|. ++... .++-..+++|++|+|..|..++.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 3455666654332221 111 8888888888883 32211 122346788899998887566532 2223468888
Q ss_pred ceeeccCC-Cccc--cchhhhcccCccEEecCCCCCccccchhhhc----CCCCCceeeccCcchhhhccCCCCccccch
Q 038405 572 RCLNLSNT-SIEE--LPSEIMYLKNLKILLLDGMRHFHLIPARVFS----SLLSLKVFSLFSTELIELHRMPPNQTTILD 644 (863)
Q Consensus 572 ~~L~L~~~-~i~~--lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~----~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 644 (863)
.||++++| .|+. +-.-...+.+|+.+.++||... +...+. .+.-+..+++..|... ....+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~---~le~l~~~~~~~~~i~~lnl~~c~~l--------TD~~~~ 287 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL---ELEALLKAAAYCLEILKLNLQHCNQL--------TDEDLW 287 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc---cHHHHHHHhccChHhhccchhhhccc--------cchHHH
Confidence 99999888 5654 2233445666777777777422 222222 2223344444443211 111122
Q ss_pred hhhhhcccceeeEEeecCchhhhhhhccccccccccEEEecccCCccccc----ccccCCcceeEeccCcc-cccCCCCC
Q 038405 645 ELECLGNQIYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID----LRNMMHLETLNIVECSL-ERVDPTFN 719 (863)
Q Consensus 645 ~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~----l~~~~~L~~L~l~~~~l-~~~~~~~~ 719 (863)
.+......++.+..+-.....-..+......+.+|+.|.+.+|....... -.+++.|+.+++.+|.. .+-....
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s- 366 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS- 366 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh-
Confidence 22222223333332222211112222233456788888888887544332 24567888888888862 2111110
Q ss_pred CCCCCCCCCEEEEecCCCCCCC--cc----cccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccccccc
Q 038405 720 GWTNFHNLHHLSIRVCPVIRDL--TW----IREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPS 793 (863)
Q Consensus 720 ~~~~l~~L~~L~L~~~~~~~~l--~~----l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 793 (863)
...+++.|+.|.++.|...++. .. -..+..|..|.|++|+.+.+-. ......+++|+.+++.+|..
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~--------Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT--------LEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH--------HHHHhhCcccceeeeechhh
Confidence 2236788899999888766654 11 2356778888898888765421 12344567788887777766
Q ss_pred ccc
Q 038405 794 LKR 796 (863)
Q Consensus 794 L~~ 796 (863)
...
T Consensus 439 vtk 441 (483)
T KOG4341|consen 439 VTK 441 (483)
T ss_pred hhh
Confidence 654
No 55
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.45 E-value=2.8e-06 Score=96.70 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=113.3
Q ss_pred ccccchhhHHHHHHHhhcc-----CCceEEEEEcCCCChHHHHhhhhhhccccc--cCCCC--EEEEEEeCCCCCHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIED-----QSEQTIGLYGMGGVGKITLLKKPNNKFLDV--NHCFD--LVIFVAVSKEGNLEKIQ 223 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~--~~~wv~~~~~~~~~~~~ 223 (863)
+.+.|||+++++|...|.. ....++.|+|.+|.|||+.++.|.+..... ..... .+++|....-.+...+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4567999999999998843 233578899999999999999998765211 11111 35677777767788888
Q ss_pred HHHHHHcCCCcccccccChhhHHHHHHHHhc---cCcEEEEEcccccccc--cccccccCC-CCCCCeEEEE--eecchh
Q 038405 224 EVIRKKLDISDYIWNMKGEYDRAVEILISLR---RKKFVLLLDDVWERLD--LSKTGVSLS-DCQNGSKIVF--TTRSEE 295 (863)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~--~~~~~~~l~-~~~~gs~iiv--TTr~~~ 295 (863)
..|.+++..... .......+....+...+. +...+||||+|+.... -+.+...+. ....+++|+| +|....
T Consensus 835 qvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 835 QVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 999888843321 112233344445554442 2345899999985321 011111111 1123555544 332211
Q ss_pred hh-----------------cccCCHHHHHHHHhHhhCcc-ccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHh
Q 038405 296 VC-----------------VECLSPEAALDLFRYKVGED-VFNSHPEIPTLAQAVVGECKGLPLALITIARAMS 351 (863)
Q Consensus 296 v~-----------------l~~L~~~~a~~Lf~~~~~~~-~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~ 351 (863)
.. ..+++.++-.+++..++... ..-.+..++-+|+.++..-|-.-.||.++-.+..
T Consensus 914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 11 56778888888888877532 1111122233334333334445566665554443
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=4.2e-06 Score=89.38 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=107.7
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccc---cccCCCCEEEEEE-eCCCCCHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFL---DVNHCFDLVIFVA-VSKEGNLEKIQEVIR 227 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~F~~~~wv~-~~~~~~~~~~~~~i~ 227 (863)
.+++|-+..++.+.+++..+.. .++.++|+.|+||||+|+.++.... ....++|...|.. -+....++++. ++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHH
Confidence 4578999999999999977654 5668999999999999999887541 1235666666654 23333333422 233
Q ss_pred HHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccc--cccccccccccCCCCCCCeEEEEeecchhhh--------
Q 038405 228 KKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVW--ERLDLSKTGVSLSDCQNGSKIVFTTRSEEVC-------- 297 (863)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~~~~~l~~~~~gs~iivTTr~~~v~-------- 297 (863)
+.+.... ..+++-++|+|+++ +...+..+...+.....++.+|++|.+....
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 3322111 12345556666654 4455777776776666788999888765433
Q ss_pred ----cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 298 ----VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 298 ----l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
+.++++++....+...... -..+.++.++..++|.|..+.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYND-------IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 6778888887777654321 114457788999999986554
No 57
>PTZ00202 tuzin; Provisional
Probab=98.43 E-value=9.8e-06 Score=85.68 Aligned_cols=151 Identities=18% Similarity=0.147 Sum_probs=92.1
Q ss_pred ccCCccccchhhHHHHHHHhhcc---CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 038405 149 GMATEKTVGADSKLDEVWGCIED---QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 149 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 225 (863)
|.+.+.|+||+++...+...|.+ ...+++.|+|++|+|||||++.+.... . ....+++.. +..+++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~---~~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G---MPAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C---ceEEEECCC---CHHHHHHH
Confidence 34457899999999999999954 234689999999999999999998765 1 123333333 67999999
Q ss_pred HHHHcCCCcccccccChhhHHHHHHHHh-----c-cCcEEEEEcccccccccccc---cccCCCCCCCeEEEEeecchhh
Q 038405 226 IRKKLDISDYIWNMKGEYDRAVEILISL-----R-RKKFVLLLDDVWERLDLSKT---GVSLSDCQNGSKIVFTTRSEEV 296 (863)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~gs~iivTTr~~~v 296 (863)
|+.++|.+. .....++...|.+.+ . +++.+||+-= .+-..+..+ ...+.....-|.|++---.+..
T Consensus 329 LL~ALGV~p----~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 329 VVKALGVPN----VEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHcCCCC----cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhc
Confidence 999999853 222334444444433 2 5666666531 111111111 1122233345566654333222
Q ss_pred h-------------cccCCHHHHHHHHhHh
Q 038405 297 C-------------VECLSPEAALDLFRYK 313 (863)
Q Consensus 297 ~-------------l~~L~~~~a~~Lf~~~ 313 (863)
. +..++.++|.+.-.+.
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 1 6667777777655443
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.9e-07 Score=72.48 Aligned_cols=57 Identities=35% Similarity=0.528 Sum_probs=27.6
Q ss_pred ccceeeccCCCccccch-hhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCc
Q 038405 570 NLRCLNLSNTSIEELPS-EIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFST 627 (863)
Q Consensus 570 ~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 627 (863)
+|++|++++|+|+.+|. .+..+++|++|++++|. +..+|++.|.+|++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 34455555555555543 24445555555555444 44444444555555555555444
No 59
>PF13173 AAA_14: AAA domain
Probab=98.43 E-value=3.3e-07 Score=83.65 Aligned_cols=101 Identities=21% Similarity=0.189 Sum_probs=69.5
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL 253 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (863)
.+++.|.|+.|+||||++++++.+. . ....++|++..+....... +.+ ....+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 4689999999999999999999876 1 3345677766544221100 000 223333333
Q ss_pred ccCcEEEEEcccccccccccccccCCCCCCCeEEEEeecchhhh
Q 038405 254 RRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVC 297 (863)
Q Consensus 254 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~~v~ 297 (863)
..++.+|+||+|....+|......+.+..+..+|++|+.+....
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 44778899999999888888777666656678999999876543
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=6.5e-06 Score=93.48 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=105.7
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
+++||.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+... -...++ +..+..-...+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCC-------CCCCcccHHHHHHhcCCC
Confidence 5689999999999999987664 4567999999999999998887651 111110 001111111111111000
Q ss_pred CCcccc---cccChhhHHHHHHHH----hccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchhhh-----
Q 038405 232 ISDYIW---NMKGEYDRAVEILIS----LRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEEVC----- 297 (863)
Q Consensus 232 ~~~~~~---~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~v~----- 297 (863)
...... .....++....+... ..++.-++|||+++... .+..+...+.......++|+||++..-.
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 000000 001111111111110 12455688999998653 3555544444444567777777765432
Q ss_pred -------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh-HHHHHHHH
Q 038405 298 -------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP-LALITIAR 348 (863)
Q Consensus 298 -------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 348 (863)
++.++.++..+.+.+.+....... ..+..+.|++.++|.. -|+..+-.
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888999999999888775443222 2677889999998865 45554333
No 61
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.41 E-value=5.4e-07 Score=91.22 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=63.7
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC--CCHHHHHHHHHH-----HcCCCcccccccChhh
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE--GNLEKIQEVIRK-----KLDISDYIWNMKGEYD 244 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~-----~l~~~~~~~~~~~~~~ 244 (863)
..-..++|+|.+|+|||||++.+|+.. . ..+|+.++|+.+... +++.++++.+.. .++.+... .......
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~ 90 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEM 90 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHH
Confidence 345679999999999999999999987 3 348999999998777 789999999933 33322100 0001111
Q ss_pred HHHHHHHH-hccCcEEEEEcccccc
Q 038405 245 RAVEILIS-LRRKKFVLLLDDVWER 268 (863)
Q Consensus 245 ~~~~l~~~-l~~k~~LlVlDdv~~~ 268 (863)
........ -.+++.++++|++..-
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHh
Confidence 11122221 2479999999999753
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=9.6e-08 Score=96.52 Aligned_cols=109 Identities=18% Similarity=0.144 Sum_probs=62.3
Q ss_pred CCCccEEEeecccccc----cchhhhhcCCCccEEeccCCc---Cccccchhh-------hcccccceeeccCCCcc---
Q 038405 520 CPHLQTLLVRFTVLEI----FPHRFFESMGALKVLDLSYNL---DLTQLPAEM-------GALINLRCLNLSNTSIE--- 582 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~----l~~~~~~~l~~L~~L~Ls~~~---~i~~lp~~i-------~~L~~L~~L~L~~~~i~--- 582 (863)
...+..+++++|.+.. .-...+.+.+.|+.-++++-. ...++|+.+ -.+++|++||||+|-+.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4567777777775432 112235566778888877641 122444432 34567888888887543
Q ss_pred --ccchhhhcccCccEEecCCCCCccccchhh-------------hcCCCCCceeeccCcch
Q 038405 583 --ELPSEIMYLKNLKILLLDGMRHFHLIPARV-------------FSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 583 --~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~-------------i~~L~~L~~L~l~~~~~ 629 (863)
.+-.-+..+..|++|+|.+|. +.....+. +++-++|+++....|.+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 233345667888888888875 33222111 33445666666665543
No 63
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.38 E-value=2.3e-06 Score=87.00 Aligned_cols=156 Identities=15% Similarity=0.147 Sum_probs=87.2
Q ss_pred hhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc
Q 038405 158 ADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW 237 (863)
Q Consensus 158 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 237 (863)
.+..++.+.+++.....+.|.|+|.+|+|||+||+.+++... ......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 455777777776666677899999999999999999998762 2233456665432210 00
Q ss_pred cccChhhHHHHHHHHhccCcEEEEEccccccc---ccc-cccccCCC-CCCCeEEEEeecchhhh---------------
Q 038405 238 NMKGEYDRAVEILISLRRKKFVLLLDDVWERL---DLS-KTGVSLSD-CQNGSKIVFTTRSEEVC--------------- 297 (863)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~-~~~~~l~~-~~~gs~iivTTr~~~v~--------------- 297 (863)
..+.+.+++ .-+||+||++... .|. .+...+.. ...+.++|+||+.....
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011112222 2389999998643 222 23222221 12344788888743211
Q ss_pred ----cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 298 ----VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 298 ----l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
+.+++.++-..++...+...... --.+..+.+++.+.|.|..+..+
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~---~~~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQ---LPDEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHH
Confidence 55666666666665543211111 11445566666666666555443
No 64
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.37 E-value=4.1e-06 Score=91.05 Aligned_cols=183 Identities=10% Similarity=0.080 Sum_probs=102.1
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCC-EEEEEEeCCCCCHHHHHHHHHH---
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFD-LVIFVAVSKEGNLEKIQEVIRK--- 228 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~--- 228 (863)
+.++|++..++.+..++..+..+.+.++|+.|+||||+|+.+++... ...+. ..+++++++-.+ .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 56899999999999999887767789999999999999999988762 12222 234444432110 00000000
Q ss_pred ---HcCCCcccccccChhhHHHHHHHHh------ccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchhhh
Q 038405 229 ---KLDISDYIWNMKGEYDRAVEILISL------RRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEEVC 297 (863)
Q Consensus 229 ---~l~~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~v~ 297 (863)
.++.... ......+....+.+.. .+.+-+||+||+.... ....+...+......+++|+||....-.
T Consensus 91 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 91 FAHFLGTDKR--IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred hhhhhhhhhh--hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 0000000 0001111222221111 1345589999997542 1222333332233456787777543211
Q ss_pred ------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 298 ------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 298 ------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
+.+++.++..+.+...+...... -..+..+.+++.++|.+-.+.
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 67788888888887765433222 125678888888888764443
No 65
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.36 E-value=6.4e-07 Score=82.38 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=78.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccc--cCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDV--NHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEIL 250 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (863)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+.+.|+++++..... ..+..+....+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34689999999999999999999876210 00134677999888889999999999999877531 346677778888
Q ss_pred HHhccCc-EEEEEcccccc-c--ccccccccCCCCCCCeEEEEeecc
Q 038405 251 ISLRRKK-FVLLLDDVWER-L--DLSKTGVSLSDCQNGSKIVFTTRS 293 (863)
Q Consensus 251 ~~l~~k~-~LlVlDdv~~~-~--~~~~~~~~l~~~~~gs~iivTTr~ 293 (863)
+.+...+ .+||+|+++.- . .++.+.... + ..+.++|++.+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 8887655 49999999874 2 122222221 2 566777776654
No 66
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=1.1e-06 Score=102.40 Aligned_cols=106 Identities=25% Similarity=0.333 Sum_probs=84.1
Q ss_pred CccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCcc-ccchhhhcccCccEEecC
Q 038405 522 HLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIE-ELPSEIMYLKNLKILLLD 600 (863)
Q Consensus 522 ~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~l~ 600 (863)
.++.|+|.+|.+....+..++.+++|+.|+|++|.....+|..++.+++|++|+|++|.+. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778888888776444444888999999999999444588888999999999999999887 678889999999999999
Q ss_pred CCCCccccchhhhcC-CCCCceeeccCcc
Q 038405 601 GMRHFHLIPARVFSS-LLSLKVFSLFSTE 628 (863)
Q Consensus 601 ~~~~l~~lp~~~i~~-L~~L~~L~l~~~~ 628 (863)
+|.....+|.. ++. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 99877788877 444 3566777777654
No 67
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3e-05 Score=83.35 Aligned_cols=189 Identities=15% Similarity=0.183 Sum_probs=117.9
Q ss_pred cccchhhHHHHHHHhhcc----CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 154 KTVGADSKLDEVWGCIED----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
.+.+|+++++++...|.. ....-+.|+|..|+|||+.++.+...........+ +++|.+-...+..+++..|+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHH
Confidence 477999999999988843 33334899999999999999999998733222232 7899999999999999999999
Q ss_pred cCCCcccccccChhhHHHHHHHHhc--cCcEEEEEccccccccc--ccccccCCC-CCCCeEEEE--eecchhhh-----
Q 038405 230 LDISDYIWNMKGEYDRAVEILISLR--RKKFVLLLDDVWERLDL--SKTGVSLSD-CQNGSKIVF--TTRSEEVC----- 297 (863)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~~~~~l~~-~~~gs~iiv--TTr~~~v~----- 297 (863)
++.... ......+....+.+.+. ++.+++|||+++....- +-+-..+.. ...+++|++ .+.+..+.
T Consensus 97 ~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 97 LGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred cCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 963221 23455566666666664 58999999999864222 111111111 112455443 33333322
Q ss_pred ------------cccCCHHHHHHHHhHhhC---ccccCCCCChHHHHHHHHHHcC-CChHHHHHH
Q 038405 298 ------------VECLSPEAALDLFRYKVG---EDVFNSHPEIPTLAQAVVGECK-GLPLALITI 346 (863)
Q Consensus 298 ------------l~~L~~~~a~~Lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~-glPLai~~~ 346 (863)
..+.+.+|-.+.+..++. .... .++..-+++..++..-+ -.-.||..+
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~-~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGV-IDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCC-cCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 556677777777777663 2222 22333333444444444 344555543
No 68
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.31 E-value=3.6e-06 Score=85.34 Aligned_cols=138 Identities=20% Similarity=0.228 Sum_probs=91.0
Q ss_pred ccccchhhHHH---HHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 153 EKTVGADSKLD---EVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 153 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
+++||.+..+. -|.++++.+.+..+.+||++|+||||||+.+.+.. +.+ ...||..|..-.-.+-.+.|.++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~--SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKH--SYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCC--ceEEEEEeccccchHHHHHHHHH
Confidence 34566554432 34556677889999999999999999999999876 222 25677777664444444444443
Q ss_pred cCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccccccccccccCCCCCCCeEEEE--eecchhhh----------
Q 038405 230 LDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVF--TTRSEEVC---------- 297 (863)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iiv--TTr~~~v~---------- 297 (863)
... ...+.++|..|.+|.|..-..-+. ...+|.-.+|+-++| ||.++..-
T Consensus 213 aq~-----------------~~~l~krkTilFiDEiHRFNksQQ-D~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 213 AQN-----------------EKSLTKRKTILFIDEIHRFNKSQQ-DTFLPHVENGDITLIGATTENPSFQLNAALLSRCR 274 (554)
T ss_pred HHH-----------------HHhhhcceeEEEeHHhhhhhhhhh-hcccceeccCceEEEecccCCCccchhHHHHhccc
Confidence 211 113457899999999975322111 123566667877776 78777653
Q ss_pred ---cccCCHHHHHHHHhHh
Q 038405 298 ---VECLSPEAALDLFRYK 313 (863)
Q Consensus 298 ---l~~L~~~~a~~Lf~~~ 313 (863)
+++|+.++-..++.+.
T Consensus 275 VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred eeEeccCCHHHHHHHHHHH
Confidence 8899999998888774
No 69
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=8.8e-06 Score=91.21 Aligned_cols=184 Identities=14% Similarity=0.120 Sum_probs=101.9
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhcccccc--CCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVN--HCFDLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
+++||-+..++.|.+++..+++. .+.++|..|+||||+|+.+.+...-.. .... +. +..+..-...+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g----~~-~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG----IT-AQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc----CC-CCCCcccHHHHHHHcC
Confidence 56899999999999999876654 568999999999999999887652100 0000 00 0001101111111110
Q ss_pred cCCCcccc---cccChhhHHHHHHHH-----hccCcEEEEEcccccc--cccccccccCCCCCCCeEEEE-eecchhhh-
Q 038405 230 LDISDYIW---NMKGEYDRAVEILIS-----LRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVF-TTRSEEVC- 297 (863)
Q Consensus 230 l~~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-TTr~~~v~- 297 (863)
-....... .....++... +.+. ..++.-++|+|+++.. ..+..+...+-....+.++|+ ||....+.
T Consensus 91 ~hpDviEIdAas~~gVDdIRe-Lie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQ-LLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCcceEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 00000000 0011122111 2121 1356679999999864 334445444433334555554 44444443
Q ss_pred ----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHH
Q 038405 298 ----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALIT 345 (863)
Q Consensus 298 ----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 345 (863)
++.++.++..+.+.+.+...... ...+..+.|++.++|.|.-...
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 88899999988888766433221 1245668899999999864443
No 70
>PLN03025 replication factor C subunit; Provisional
Probab=98.31 E-value=4.9e-06 Score=89.07 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=98.8
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCC-EEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFD-LVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.+++|.++.++.+..++..+..+-+.++|++|+||||+|+.+++... ...|. .++-+..++..+...+ +.+++.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~v-r~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVV-RNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHH-HHHHHHHH
Confidence 56889999999998888877777788999999999999999988752 12232 1222233333222222 22221110
Q ss_pred CCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchhhh------------
Q 038405 232 ISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEEVC------------ 297 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~v~------------ 297 (863)
.... . .-.++.-++|+|+++... ....+...+......+++|+++....-.
T Consensus 90 ~~~~---~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 90 QKKV---T------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred hccc---c------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 0000 0 001356689999998642 2222322222223456777766543211
Q ss_pred cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH
Q 038405 298 VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL 341 (863)
Q Consensus 298 l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 341 (863)
+++++.++..+.+...+.......+ .+....|++.++|-.-
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMR 195 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 7778888888888776643332221 5667888888888663
No 71
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.4e-05 Score=86.89 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=100.0
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.+++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+++... ...... ..++..-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 5689999999999999977654 4678999999999999999987651 100000 000000001111111000
Q ss_pred CCcccc--c-ccChhhHHHHHHHHh-----ccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchh-hh---
Q 038405 232 ISDYIW--N-MKGEYDRAVEILISL-----RRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEE-VC--- 297 (863)
Q Consensus 232 ~~~~~~--~-~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~-v~--- 297 (863)
...... . ....++ ...+.+.+ .+++-++|+|+++... .+..+...+.......++|++|.+.. +.
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 000000 0 001111 12222222 2455689999998653 34445444444445667777665432 21
Q ss_pred --------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHH
Q 038405 298 --------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLAL 343 (863)
Q Consensus 298 --------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 343 (863)
+.+++.++..+.+...+...... -.++.+..|++.++|.|-.+
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~---i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESID---TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 78889998888877755332211 12567788999999987533
No 72
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=8.5e-06 Score=94.47 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=101.9
Q ss_pred ccccchhhHHHHHHHhhccCCceE-EEEEcCCCChHHHHhhhhhhccccccCC-------------------CCEEEEEE
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQT-IGLYGMGGVGKITLLKKPNNKFLDVNHC-------------------FDLVIFVA 212 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 212 (863)
.++||-+..++.|.+++..+++.- +.++|..|+||||+|+.+++... -... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 568999999999999998776654 58999999999999999998762 1111 11111111
Q ss_pred eCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH-HhccCcEEEEEcccccc--cccccccccCCCCCCCeEEEE
Q 038405 213 VSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI-SLRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVF 289 (863)
Q Consensus 213 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv 289 (863)
......+..+ +.|. ..+.. -..+++-++|+|++... .....+...+-......++|+
T Consensus 95 Aas~~kVDdI-ReLi-------------------e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 95 AASRTKVDDT-RELL-------------------DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred cccccCHHHH-HHHH-------------------HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 1110111111 1111 11111 12467789999999864 334444444433334556665
Q ss_pred eecch-hhh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 290 TTRSE-EVC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 290 TTr~~-~v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
+|.+. .+. +++++.++..+.+.+.+..... .-..+....|++.++|.|--+.
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 55443 332 8899999999888876643221 1225678899999999885333
No 73
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.28 E-value=1.6e-05 Score=85.69 Aligned_cols=168 Identities=13% Similarity=0.162 Sum_probs=99.9
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEe--CCCCCHHHHHHHHHHHc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAV--SKEGNLEKIQEVIRKKL 230 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l 230 (863)
.+++|+++.++.+..++.....+.+.|+|..|+||||+|+.+++... ...+. ..++.+ +.......+...+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~-~~~i~~~~~~~~~~~~~~~~i~~~~ 93 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWR-ENFLELNASDERGIDVIRNKIKEFA 93 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccc-cceEEeccccccchHHHHHHHHHHH
Confidence 56889999999999999887777789999999999999999998752 12221 122322 22222221111111111
Q ss_pred CCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchh-hh----------
Q 038405 231 DISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEE-VC---------- 297 (863)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~-v~---------- 297 (863)
.... .....+-++++|+++... ....+...+......+++|+++.... +.
T Consensus 94 ~~~~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 94 RTAP-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred hcCC-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 0000 001235689999986532 22333333333334567777664322 11
Q ss_pred -cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHH
Q 038405 298 -VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLAL 343 (863)
Q Consensus 298 -l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 343 (863)
+.+++.++....+...+....... .++....+++.++|.+--+
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 778888888888877664333211 2567888999999987543
No 74
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.27 E-value=1.5e-06 Score=85.36 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=32.6
Q ss_pred cccchhhHHHHHHHhh---ccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCI---EDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.||||+++++++...+ .....+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999 23557899999999999999999999887
No 75
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.25 E-value=1.9e-06 Score=90.13 Aligned_cols=283 Identities=21% Similarity=0.184 Sum_probs=176.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCC-CEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF-DLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
..+-+.++|.|||||||++-.+.. . ...| +.+.++....-.+...+.-.....++.+. .+-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 457899999999999999999988 4 3445 56777777777777777777777777654 222344556677
Q ss_pred HhccCcEEEEEcccccccc-cccccccCCCCCCCeEEEEeecchhhh-------cccCCHH-HHHHHHhHhhCcc--ccC
Q 038405 252 SLRRKKFVLLLDDVWERLD-LSKTGVSLSDCQNGSKIVFTTRSEEVC-------VECLSPE-AALDLFRYKVGED--VFN 320 (863)
Q Consensus 252 ~l~~k~~LlVlDdv~~~~~-~~~~~~~l~~~~~gs~iivTTr~~~v~-------l~~L~~~-~a~~Lf~~~~~~~--~~~ 320 (863)
+..++|.++|+||..+..+ -......+......-.|+.|+|..... +.+|+.. ++.++|...+... .+.
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 7889999999999865422 111122222333445688888876544 6666654 7889988776422 222
Q ss_pred CCCChHHHHHHHHHHcCCChHHHHHHHHHHhCCCChhhHHHH----HHHHhcCCCccC-CCCccccchhhcccCCCChhh
Q 038405 321 SHPEIPTLAQAVVGECKGLPLALITIARAMSSRRSPREWQYV----IDELQRNPSRFA-GMGNLVFPILRFSYDNLTDDT 395 (863)
Q Consensus 321 ~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~----~~~l~~~~~~~~-~~~~~i~~~l~~sy~~L~~~~ 395 (863)
..........+|.++..|.|++|...++..+. ....+--.. ...+... .... -......+.+.+||.-|..-
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw- 240 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW- 240 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-
Confidence 33445778899999999999999999998877 333322211 1112221 1110 01125678899999999885
Q ss_pred HhHHhhhhcCCCCCCccchHHHHHHHHhcCCCCCccchhHHhhhHHHHHHHHHHhcccccCCC-CCCeEEechHHHHHHH
Q 038405 396 LKTCFLYCSLFPEENNIRKDELIDLWIGEGFLSDFRSITTARNQGEYIIGSLKLACLLESGEY-SEDFVKMHDVVRDMAL 474 (863)
Q Consensus 396 ~k~cfl~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~-~~~~~~mHdlv~d~~~ 474 (863)
.+.-|--++.|...+... ...|.+.|-.... ........+..+++++++..... ....++.-+-++.|+.
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~-----~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVDV-----PRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCcccc-----chHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 888899999988766544 2344444432211 22233444667777777764431 1223444444555554
Q ss_pred Hh
Q 038405 475 WL 476 (863)
Q Consensus 475 ~i 476 (863)
..
T Consensus 312 ae 313 (414)
T COG3903 312 AE 313 (414)
T ss_pred HH
Confidence 33
No 76
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.4e-05 Score=89.91 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=101.6
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.++||.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++... -.. ++.. ..++.-...+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~------~~~~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CET------GVTS-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCc------CCCC-CCCccCHHHHHHhcCCC
Confidence 5689999999999999987654 5778999999999999999987651 101 0000 00010011111111000
Q ss_pred CCcccc---cccChhhHHHHHHHH-----hccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecchh-hh---
Q 038405 232 ISDYIW---NMKGEYDRAVEILIS-----LRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEE-VC--- 297 (863)
Q Consensus 232 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~-v~--- 297 (863)
...... .....++. ..+... ..+++-++|+|+|... .....+...+.....+.++|++|.+.. +.
T Consensus 87 pDviEIDAAs~~~VddI-Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIEIDAASRTKVEDT-RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH
Confidence 000000 00111111 112111 2356678999999864 234444444433344567777776532 21
Q ss_pred --------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 298 --------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 298 --------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
+++++.++..+.+...+...... -..+....|++.++|.+-.+.
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~---id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIA---ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 78899999888887776443321 225677889999999774433
No 77
>PRK08727 hypothetical protein; Validated
Probab=98.24 E-value=1.3e-05 Score=81.36 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=87.6
Q ss_pred ccccch-hhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGA-DSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr-~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
+.|++. ...+..+.....+.....+.|+|..|+|||+|++.+++... .....+.|+++.+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~---- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR---- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH----
Confidence 345543 33444444444344445699999999999999999988762 2223556665322 111111
Q ss_pred CCcccccccChhhHHHHHHHHhccCcEEEEEccccccc---cccc-ccccCCC-CCCCeEEEEeecchhhh---------
Q 038405 232 ISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL---DLSK-TGVSLSD-CQNGSKIVFTTRSEEVC--------- 297 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~-~~~~l~~-~~~gs~iivTTr~~~v~--------- 297 (863)
...+.+ .+.-+||+||+.... .|.. +...+.. ..+|..||+||+...-.
T Consensus 86 ----------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 ----------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ----------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 011122 133589999997432 2322 2111111 12466799999864332
Q ss_pred ----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHH
Q 038405 298 ----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLAL 343 (863)
Q Consensus 298 ----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 343 (863)
+++++.++-.+++.+.+....... -++...-|++.+.|-.-++
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l---~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLAL---DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 667777777777776554322211 2556677777777655433
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2e-05 Score=88.48 Aligned_cols=188 Identities=14% Similarity=0.059 Sum_probs=106.9
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
++++|-+..++.|..++..+... .+.++|++|+||||+|+.+++... ..+.+...+|.|.+.. .+.......+..++
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhH-HHhcCCCCceEEec
Confidence 56899999999999999776654 569999999999999999988762 1122222333332110 00000000000000
Q ss_pred CCcccccccChhhHHHHHHHHh-----ccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecc-hhhh------
Q 038405 232 ISDYIWNMKGEYDRAVEILISL-----RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRS-EEVC------ 297 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~-~~v~------ 297 (863)
.. .....+ .+..+.+.+ .+++-++|+|+++.. ..+..+...+........+|++|.. ..+.
T Consensus 92 ~~----~~~~vd-~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 92 AA----SNNSVE-DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred cc----ccCCHH-HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 00 001111 122222222 246678999999754 3355555555443445555555543 3332
Q ss_pred -----cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH-HHHHHHHHH
Q 038405 298 -----VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL-ALITIARAM 350 (863)
Q Consensus 298 -----l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~l 350 (863)
+.+++.++..+.+...+....... ..+....|++.++|.+- |+..+-..+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 788999999999988765433221 25678899999999885 443433333
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.22 E-value=2.3e-07 Score=103.28 Aligned_cols=121 Identities=30% Similarity=0.348 Sum_probs=69.2
Q ss_pred EEEeccCCccccCC-CC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCc
Q 038405 504 RLSLWGSSIEYLPE-TP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSI 581 (863)
Q Consensus 504 ~l~l~~~~~~~l~~-~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i 581 (863)
.+++..+.+..... .. +.+|..|++.+|.+..+... +..+++|++|++++| .|..+.. +..+..|+.|++++|.|
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGNLI 152 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-ccccccc-hhhccchhhheeccCcc
Confidence 33444455544222 22 66667777777666655542 455667777777776 5555543 55666677777777766
Q ss_pred cccchhhhcccCccEEecCCCCCccccch-hhhcCCCCCceeeccCcchh
Q 038405 582 EELPSEIMYLKNLKILLLDGMRHFHLIPA-RVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 582 ~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 630 (863)
..++ .+..+++|+.+++++|. +..++. . ...+.+|+.+.+.+|.+.
T Consensus 153 ~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 153 SDIS-GLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhcc-CCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 6654 24446666777776665 444433 1 245666666666665443
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2e-05 Score=87.74 Aligned_cols=176 Identities=17% Similarity=0.156 Sum_probs=100.2
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccC-C-----------------CCEEEEEEe
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNH-C-----------------FDLVIFVAV 213 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~-----------------F~~~~wv~~ 213 (863)
+++||.+.....+...+..+.. ..+.++|++|+||||+|+.+++....... . +.....+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 5689999988888888877766 45789999999999999999876511000 0 001112222
Q ss_pred CCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEee
Q 038405 214 SKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTT 291 (863)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTT 291 (863)
+...+...+ ++|.+.... .-..+++-++|+|+++.. .....+...+........+|++|
T Consensus 94 a~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred cccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 111111111 111111100 012245679999999753 23334433333323344555454
Q ss_pred cc-hhhh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCC-hHHHHHHHHHH
Q 038405 292 RS-EEVC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGL-PLALITIARAM 350 (863)
Q Consensus 292 r~-~~v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~~l 350 (863)
.+ ..+. +.+++.++....+...+....... .++....|++.++|- +.|+..+-.+.
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 43 2222 688999998888887764322211 256778888877654 66766665544
No 81
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.20 E-value=2.1e-07 Score=94.14 Aligned_cols=247 Identities=18% Similarity=0.126 Sum_probs=132.6
Q ss_pred hhcCCCccEEeccCCcCcc----ccchhhhcccccceeeccCCC----ccccchhh-------hcccCccEEecCCCCCc
Q 038405 541 FESMGALKVLDLSYNLDLT----QLPAEMGALINLRCLNLSNTS----IEELPSEI-------MYLKNLKILLLDGMRHF 605 (863)
Q Consensus 541 ~~~l~~L~~L~Ls~~~~i~----~lp~~i~~L~~L~~L~L~~~~----i~~lP~~i-------~~L~~L~~L~l~~~~~l 605 (863)
...+..+..|+||+|..-. .+-..+.+.++|+.-++++-. ..++|+.+ -.+++|+.|+|++|..-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4567889999999994333 234456677889999988641 23556543 45679999999999754
Q ss_pred cccch---hhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccccEE
Q 038405 606 HLIPA---RVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCIKRL 682 (863)
Q Consensus 606 ~~lp~---~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L 682 (863)
...+. ..+.++++|++|.+.+|.+....... -...|.+|...+ . ....+.|+.+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~--l~~al~~l~~~k-k--------------------~~~~~~Lrv~ 162 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR--LGRALFELAVNK-K--------------------AASKPKLRVF 162 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH--HHHHHHHHHHHh-c--------------------cCCCcceEEE
Confidence 44433 34678999999999988753211000 111233333221 0 1122356666
Q ss_pred EecccCCccccc------ccccCCcceeEeccCcccccC--CCCCCCCCCCCCCEEEEecCCCCCCC-----cccccCCC
Q 038405 683 TIMHNLDSHSID------LRNMMHLETLNIVECSLERVD--PTFNGWTNFHNLHHLSIRVCPVIRDL-----TWIREAPN 749 (863)
Q Consensus 683 ~l~~~~~~~~~~------l~~~~~L~~L~l~~~~l~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~l-----~~l~~l~~ 749 (863)
....|....... +..++.|+.+.+..|.+..-. .....+..+++|+.|+|..|.....- ..+..+|+
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 655554433221 555666777777666543211 11113445667777777766543221 23455666
Q ss_pred cceEeeccCcchhhhhcccCCccc-cccCccCcccceeccccccccc----ccccCccCCCCccEEeeccC
Q 038405 750 LQFLSLVNCQALSEIIESAGSSEV-AESHNYFAYLMVIDLDSLPSLK----RICHGTMPFPSLQNVSVTNC 815 (863)
Q Consensus 750 L~~L~L~~~~~l~~i~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~L~----~l~~~~~~~~~L~~L~i~~C 815 (863)
|+.|++++|..-.. |...+ ..-...+|+|+.|.+.++.--. .+.......|.|..|.+.+|
T Consensus 243 L~El~l~dcll~~~-----Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 243 LRELNLGDCLLENE-----GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred heeecccccccccc-----cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 77777776652111 11000 0112336666666665542111 11112223566666666665
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.5e-05 Score=87.22 Aligned_cols=177 Identities=11% Similarity=0.037 Sum_probs=100.3
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
+++||.+..+..|..++..+.+. .+.++|+.|+||||+|+.+++... -...... ..+..... ...+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-ce~~~~~---~pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-CENPIGN---EPCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-cccccCc---cccCCCcH----HHHHHccCC
Confidence 56899999999999999887754 589999999999999999988762 1110000 00011101 111211111
Q ss_pred CCccccc---ccChhhHHHHHHHH-----hccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEee-cchhhh---
Q 038405 232 ISDYIWN---MKGEYDRAVEILIS-----LRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTT-RSEEVC--- 297 (863)
Q Consensus 232 ~~~~~~~---~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTT-r~~~v~--- 297 (863)
....... ....+ .+..+.+. ..++.-++|+|+++.. ..+..+...+-.......+|++| ....+.
T Consensus 90 ~dviEIdaas~~gVd-~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 90 SDVLEIDAASNRGIE-NIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred ccceeechhhcccHH-HHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 0000000 01111 12222222 2356679999999854 34555544443333345545444 433332
Q ss_pred --------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH
Q 038405 298 --------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL 341 (863)
Q Consensus 298 --------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 341 (863)
+.+++.++..+.+...+...... -..+....|++.++|.+-
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~---~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ---YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCChHH
Confidence 78888888888887766433221 125677889999999874
No 83
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=2.5e-05 Score=88.74 Aligned_cols=168 Identities=13% Similarity=0.163 Sum_probs=98.3
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCC-------------------CCEEEEEE
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHC-------------------FDLVIFVA 212 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 212 (863)
.++||.+..+..|.+++..+++ ..+.++|..|+||||+|+.+++... -... |-..+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 5689999999999999987664 4689999999999999999887641 1100 10111111
Q ss_pred eCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH-HhccCcEEEEEcccccccc--cccccccCCCCCCCeEEEE
Q 038405 213 VSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI-SLRRKKFVLLLDDVWERLD--LSKTGVSLSDCQNGSKIVF 289 (863)
Q Consensus 213 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~iiv 289 (863)
......+.. .+++++ .... -..+++-++|+|++..... ...+...+......+++|+
T Consensus 95 aAs~~gVd~-IRelle-------------------~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fIL 154 (709)
T PRK08691 95 AASNTGIDN-IREVLE-------------------NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (709)
T ss_pred ccccCCHHH-HHHHHH-------------------HHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEE
Confidence 111111111 011111 1000 0235667899999975432 3333333322234556666
Q ss_pred eecchh-hh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 290 TTRSEE-VC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 290 TTr~~~-v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
+|.+.. +. +.+++.++....+.+.+....... ..+....|++.++|.+--+.
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHH
Confidence 665432 22 678889888888877664433221 25677889999998874333
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.18 E-value=1e-05 Score=94.42 Aligned_cols=158 Identities=21% Similarity=0.215 Sum_probs=92.2
Q ss_pred ccccchhhHHH---HHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 153 EKTVGADSKLD---EVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 153 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
++++|.+..+. .+...+..+....+.++|++|+||||||+.+++.. ...|. .+..+. .....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d-------- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD-------- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH--------
Confidence 56889988774 46667777777788999999999999999999876 34441 111110 00000
Q ss_pred cCCCcccccccChhhHHHHHHHHh--ccCcEEEEEcccccc--cccccccccCCCCCCCeEEEE--eecchhh-------
Q 038405 230 LDISDYIWNMKGEYDRAVEILISL--RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVF--TTRSEEV------- 296 (863)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv--TTr~~~v------- 296 (863)
..+......+.+ .+++.+|||||++.- ...+.+...+ ..|+.++| ||.+...
T Consensus 93 ------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 93 ------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred ------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhh
Confidence 111111121222 246779999999753 2333333222 33555555 3444321
Q ss_pred ------hcccCCHHHHHHHHhHhhCccc----cCCCCChHHHHHHHHHHcCCCh
Q 038405 297 ------CVECLSPEAALDLFRYKVGEDV----FNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 297 ------~l~~L~~~~a~~Lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~glP 340 (863)
.+++++.++...++...+.... .....-.++....|++.+.|.-
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1888999999999887654100 0011112566788888888764
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.6e-05 Score=87.68 Aligned_cols=175 Identities=17% Similarity=0.153 Sum_probs=101.0
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhcccccc------------------CCCCEEEEEEe
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVN------------------HCFDLVIFVAV 213 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 213 (863)
.+++|-+..++.+...+..+.. ..+.++|+.|+||||+|+.+++...... +.|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 5688999999999999977654 4578999999999999999987541100 01112222222
Q ss_pred CCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH-HhccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEe
Q 038405 214 SKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI-SLRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFT 290 (863)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivT 290 (863)
.....++++ .+....+.. -..+++-++|+|++... ..+..+...+-.....+++|++
T Consensus 96 as~~gvd~i--------------------r~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 96 ASRTGVEET--------------------KEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ccccCHHHH--------------------HHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 111111111 111111111 12356779999999754 2344444444433445666654
Q ss_pred ecch-hhh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh-HHHHHHHHHH
Q 038405 291 TRSE-EVC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP-LALITIARAM 350 (863)
Q Consensus 291 Tr~~-~v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 350 (863)
|.+. .+. +++++.++..+.+...+..... .-..+....|++.++|.+ -|+..+-.++
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4433 222 7888888887777765433221 122566778899999866 4544444333
No 86
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.17 E-value=2.8e-06 Score=89.47 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=65.3
Q ss_pred HHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC--CHHHHHHHHHHHcCCCcccccccC
Q 038405 165 VWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG--NLEKIQEVIRKKLDISDYIWNMKG 241 (863)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 241 (863)
+++++.. ..-.-.+|+|++|+||||||+.+|+... ..+|+.++||.+.+.+ .+.++++.|...+-... ++...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~~ 234 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPA 234 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCCH
Confidence 4444432 3345689999999999999999999873 3489999999999887 77888888863221111 01111
Q ss_pred hh-----hHHHHHHHH--hccCcEEEEEccccc
Q 038405 242 EY-----DRAVEILIS--LRRKKFVLLLDDVWE 267 (863)
Q Consensus 242 ~~-----~~~~~l~~~--l~~k~~LlVlDdv~~ 267 (863)
.. ..+....++ -.+++++|++|++..
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 00 111122222 257999999999964
No 87
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=4.3e-05 Score=85.43 Aligned_cols=183 Identities=14% Similarity=0.053 Sum_probs=102.6
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCCCE-EEEEEeCCCCCHHHHHHHHHHHc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDL-VIFVAVSKEGNLEKIQEVIRKKL 230 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l 230 (863)
.++||-+..+..+...+..+.. ..+.++|+.|+||||+|+.+++... -...... --+. .+..-.....|....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~----~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIK----TCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcC----CCCCChHHHHHhcCC
Confidence 5688999999999988876554 5788999999999999999988761 1111000 0000 000001111111100
Q ss_pred CCCcccc---cccChhhHHHHHHH----HhccCcEEEEEcccccc--cccccccccCCCCCCCeEEEE-eecchhhh---
Q 038405 231 DISDYIW---NMKGEYDRAVEILI----SLRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVF-TTRSEEVC--- 297 (863)
Q Consensus 231 ~~~~~~~---~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-TTr~~~v~--- 297 (863)
....... .....++....+.. -+.+++-++|+|+++.. ..+..+...+......+.+|+ ||+...+.
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 0000000 00111221111111 12356778999999864 345556555544445666665 44444443
Q ss_pred --------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHH
Q 038405 298 --------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLAL 343 (863)
Q Consensus 298 --------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 343 (863)
+.+++.++..+.+...+....... ..+....|++.++|.+--+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 788999999999988775433211 2566788999999977433
No 88
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.16 E-value=2.7e-05 Score=75.59 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=81.8
Q ss_pred ccccchhhHHHHHHHhhc-----cCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIE-----DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIR 227 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (863)
++|||.+..++.+.-++. ++...-+-+||++|+||||||.-+++.. ...|. +.+...-....++ ..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHH
Confidence 679999998888665553 2456789999999999999999999987 34442 2221110011111 1111
Q ss_pred HHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc---------cccccccc-CCCCC-----------CCeE
Q 038405 228 KKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL---------DLSKTGVS-LSDCQ-----------NGSK 286 (863)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~~-l~~~~-----------~gs~ 286 (863)
.. + +++-+|.+|.+..-. ..++.... .-..+ +=+-
T Consensus 97 ~~-----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 97 TN-----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred Hh-----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 11 2 133455666665311 00100000 00011 1123
Q ss_pred EEEeecchhhh------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHH
Q 038405 287 IVFTTRSEEVC------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALIT 345 (863)
Q Consensus 287 iivTTr~~~v~------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 345 (863)
|=.|||.-.+. ++..+.+|-.++..+.+..-... -.++.+.+|++.|.|-|--+.-
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrGtPRiAnr 220 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRGTPRIANR 220 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTTSHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCCChHHHHH
Confidence 44678775554 67788888888888766432221 2268899999999999954443
No 89
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=3.2e-05 Score=86.98 Aligned_cols=184 Identities=12% Similarity=0.071 Sum_probs=98.3
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.+++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+++... -.+ |... ..++.-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC------CCCC-CCCcccHHHHHHHcCCC
Confidence 5689999999999999976554 4688999999999999999987751 111 1110 01111111111111100
Q ss_pred CCccccc---ccChhhHHHHHHHH-----hccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecch-hhh---
Q 038405 232 ISDYIWN---MKGEYDRAVEILIS-----LRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSE-EVC--- 297 (863)
Q Consensus 232 ~~~~~~~---~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~-~v~--- 297 (863)
....... ....++ ...+.+. ..+++-++|+|+++.. ..+..+...+......+.+|++|... .+.
T Consensus 88 ~DiieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 0000000 011111 1111111 1234457999999753 33444444443333455665555332 221
Q ss_pred --------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH-HHHHHHH
Q 038405 298 --------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL-ALITIAR 348 (863)
Q Consensus 298 --------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 348 (863)
+.+++.++....+...+....... ..+.+..+++.++|.+- |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I---s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIKI---EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 777888888877777654322111 15567888889988653 4444443
No 90
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=4.7e-05 Score=82.02 Aligned_cols=186 Identities=13% Similarity=0.040 Sum_probs=103.6
Q ss_pred CCccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhcccccc-CCCCE-EE-EEEeCCCCCHHHHHHHH
Q 038405 151 ATEKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVN-HCFDL-VI-FVAVSKEGNLEKIQEVI 226 (863)
Q Consensus 151 ~~~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~-~~-wv~~~~~~~~~~~~~~i 226 (863)
...+++|.+..++.+.+.+..+.+. .+.++|+.|+||+|+|..+++...-.. ...+. .. -.+.. ....-...+.|
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~~i 95 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVARRI 95 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHHHH
Confidence 3467899999999999999887654 589999999999999988877652110 00000 00 00000 00000111111
Q ss_pred HHHcCCCccc-c------------cccChhhHHHHHHHHhc-----cCcEEEEEcccccc--cccccccccCCCCCCCeE
Q 038405 227 RKKLDISDYI-W------------NMKGEYDRAVEILISLR-----RKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSK 286 (863)
Q Consensus 227 ~~~l~~~~~~-~------------~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~ 286 (863)
.. -..++.. . .....++ +..+.+.+. +.+-++|+||++.. .....+...+.....++.
T Consensus 96 ~~-~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 96 AA-GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred Hc-cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 11 0000000 0 0011122 333334332 46778999999754 233344333433334566
Q ss_pred EEEeecchhhh------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 287 IVFTTRSEEVC------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 287 iivTTr~~~v~------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
+|++|.+..-. +.+++.++..+.+....... . .+....++..++|.|..+..+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~------~-~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL------P-DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC------C-HHHHHHHHHHcCCCHHHHHHH
Confidence 77776655322 88999999999988754221 1 222378899999999866544
No 91
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=4.6e-05 Score=82.85 Aligned_cols=161 Identities=13% Similarity=0.095 Sum_probs=95.9
Q ss_pred ccccchhhHHHHHHHhhccCC----------ceEEEEEcCCCChHHHHhhhhhhcccccc------------------CC
Q 038405 153 EKTVGADSKLDEVWGCIEDQS----------EQTIGLYGMGGVGKITLLKKPNNKFLDVN------------------HC 204 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~ 204 (863)
++++|-+..++.+.+++..+. ...+.++|+.|+||||+|+.++....-.. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457899999999999997643 45688999999999999999876541000 11
Q ss_pred CCEEEEEEeC-CCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHh-----ccCcEEEEEccccccc--ccccccc
Q 038405 205 FDLVIFVAVS-KEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL-----RRKKFVLLLDDVWERL--DLSKTGV 276 (863)
Q Consensus 205 F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~ 276 (863)
.|. .++... ....+ ++ +..+.+.. .+++-++|+|+++... ....+..
T Consensus 85 pD~-~~i~~~~~~i~i-----------------------~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk 139 (394)
T PRK07940 85 PDV-RVVAPEGLSIGV-----------------------DE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLK 139 (394)
T ss_pred CCE-EEeccccccCCH-----------------------HH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHH
Confidence 111 111110 01111 11 11222222 2455688889998642 2233333
Q ss_pred cCCCCCCCeEEEEeecchh-hh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 277 SLSDCQNGSKIVFTTRSEE-VC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 277 ~l~~~~~gs~iivTTr~~~-v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
.+.....+..+|++|.+.. +. +.+++.++..+.+....+. ..+.+..++..++|.|....
T Consensus 140 ~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--------~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 140 AVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--------DPETARRAARASQGHIGRAR 211 (394)
T ss_pred HhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHH
Confidence 3333344566666666543 22 7888999988888743321 14567889999999997554
Q ss_pred HH
Q 038405 345 TI 346 (863)
Q Consensus 345 ~~ 346 (863)
.+
T Consensus 212 ~l 213 (394)
T PRK07940 212 RL 213 (394)
T ss_pred HH
Confidence 43
No 92
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=5.1e-05 Score=84.09 Aligned_cols=168 Identities=15% Similarity=0.127 Sum_probs=100.6
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccc------------------cCCCCEEEEEEe
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDV------------------NHCFDLVIFVAV 213 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~F~~~~wv~~ 213 (863)
.++||.+..++.+.+.+..+... .+.++|+.|+||||+|+.++....-. .+.+..++.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 56899999999999988777665 78999999999999999887643000 001112233333
Q ss_pred CCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEee
Q 038405 214 SKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTT 291 (863)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTT 291 (863)
+....+.++- +|.+..... -..+++-++|+|++... .....+...+....+.+++|++|
T Consensus 93 as~~~vddIR-~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred ccCCCHHHHH-HHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3222222211 121111000 01245668999999754 23444444444444566766655
Q ss_pred cc-hhhh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHH
Q 038405 292 RS-EEVC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLA 342 (863)
Q Consensus 292 r~-~~v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 342 (863)
.. ..+. +.+++.++..+.+...+....... .++..+.|++.++|.+-.
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRN 213 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 43 3332 677888888888887765433211 256678899999887743
No 93
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=2.1e-06 Score=84.75 Aligned_cols=200 Identities=21% Similarity=0.197 Sum_probs=111.5
Q ss_pred hcCCCccEEeccCCcCcccc---chhhhcccccceeeccCCCcc----ccchhhhcccCccEEecCCCCCccccchhhhc
Q 038405 542 ESMGALKVLDLSYNLDLTQL---PAEMGALINLRCLNLSNTSIE----ELPSEIMYLKNLKILLLDGMRHFHLIPARVFS 614 (863)
Q Consensus 542 ~~l~~L~~L~Ls~~~~i~~l---p~~i~~L~~L~~L~L~~~~i~----~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~ 614 (863)
...++++.|||.+| .+..- -..+.+|++|++|+|+.|.+. .+| ..+.+|+.|-|.++..-..-..+.+.
T Consensus 68 ~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhh
Confidence 34566777777777 44432 223346777777777777544 333 23557777777766522222223355
Q ss_pred CCCCCceeeccCcchhhhccCCCCcc---ccchhhhhhcccceeeEEeecCchhhhhhhccccccccccEEEecccCCcc
Q 038405 615 SLLSLKVFSLFSTELIELHRMPPNQT---TILDELECLGNQIYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSH 691 (863)
Q Consensus 615 ~L~~L~~L~l~~~~~~~~~~~~~~~~---~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~ 691 (863)
.++.++.|+++.|+...+........ +.+..|....+ ...............+++..+-+..|....
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c----------~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~ 213 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC----------LEQLWLNKNKLSRIFPNVNSVFVCEGPLKT 213 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCc----------HHHHHHHHHhHHhhcccchheeeecCcccc
Confidence 66777777777665433322111100 11111111110 000000111111234677778787775443
Q ss_pred cc---cccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCc-------ccccCCCcceEeec
Q 038405 692 SI---DLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLT-------WIREAPNLQFLSLV 756 (863)
Q Consensus 692 ~~---~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~-------~l~~l~~L~~L~L~ 756 (863)
.. ...+++.+.-|.++.+++.++.... ....|+.|..|.+.+++.+..+. .++.|++++.|+=+
T Consensus 214 ~s~ek~se~~p~~~~LnL~~~~idswasvD-~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 214 ESSEKGSEPFPSLSCLNLGANNIDSWASVD-ALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhcccCCCCCcchhhhhcccccccHHHHH-HHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 32 2667778888899988877663221 34578999999999998876652 25788999988655
No 94
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=5.6e-05 Score=83.28 Aligned_cols=189 Identities=10% Similarity=0.043 Sum_probs=103.6
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEE-eCCCCCHHHHHHHHHHHc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVA-VSKEGNLEKIQEVIRKKL 230 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~~~l 230 (863)
.+++|.+..++.+.+++.++.+. .+.++|+.|+||||+|+.+++... -...++...|.. +..++..-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 56889999999999999887665 488999999999999999887662 111111111110 001111111111111110
Q ss_pred CCCcccccc---cChhhHHHHHHHHh-----ccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecc-hhhh--
Q 038405 231 DISDYIWNM---KGEYDRAVEILISL-----RRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRS-EEVC-- 297 (863)
Q Consensus 231 ~~~~~~~~~---~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~-~~v~-- 297 (863)
......++. ...++ +..+.+.+ .+++-++|+|++.... .+..+...+......+.+|++|.. ..+.
T Consensus 95 ~~n~~~~~~~~~~~id~-Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDD-IRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHH-HHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 000000000 11122 22233333 2456688999987543 455555555444456676665533 3332
Q ss_pred ---------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH-HHHHH
Q 038405 298 ---------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL-ALITI 346 (863)
Q Consensus 298 ---------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 346 (863)
+.+++.++..+.+...+...... -..+.+..|++.++|.+- |+..+
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~---i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGIS---VDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 67788888887777665322211 126778899999999774 44433
No 95
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.1e-05 Score=86.29 Aligned_cols=168 Identities=13% Similarity=0.143 Sum_probs=97.5
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccC-------------------CCCEEEEEE
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNH-------------------CFDLVIFVA 212 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~F~~~~wv~ 212 (863)
+++||-+..++.+.+++..+.+. .+.++|+.|+||||+|+.+++... -.. .|.-++.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 56899999999999999876654 578999999999999999887651 111 111122222
Q ss_pred eCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEe
Q 038405 213 VSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFT 290 (863)
Q Consensus 213 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivT 290 (863)
.+....++.+ +++++.+... -..++.-++|+|+|+.. .....+...+......+++|++
T Consensus 95 aas~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred ccccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 2222222221 1122211100 11356678999999864 3344444444333445676666
Q ss_pred ecch-hhh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHH
Q 038405 291 TRSE-EVC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLAL 343 (863)
Q Consensus 291 Tr~~-~v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 343 (863)
|.+. .+. +++++.++....+...+....... ..+....|++.++|.+--+
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDA 217 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHH
Confidence 5443 222 777888777666655543322111 2456678888888877433
No 96
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.10 E-value=7.5e-05 Score=81.77 Aligned_cols=171 Identities=11% Similarity=0.150 Sum_probs=99.0
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccc-c------------------CCCCEEEEEE
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDV-N------------------HCFDLVIFVA 212 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~F~~~~wv~ 212 (863)
.+++|.++.++.+.+++..+.. ..+.++|++|+||||+|+.++...... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 5689999999999999977654 467899999999999999888764110 0 12222 2222
Q ss_pred eCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEe
Q 038405 213 VSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFT 290 (863)
Q Consensus 213 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivT 290 (863)
.+....... .+++.+.+... -..+++-++|+|+++.. .....+...+......+.+|++
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred ccccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 211111111 11222211110 01245568899998654 2344444444333446677777
Q ss_pred ecchh-hh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 291 TRSEE-VC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 291 Tr~~~-v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
|.+.. +. +.++++++..+.+...+....... ..+.+..+++.++|.|..+...
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHH
Confidence 65543 11 666778887777776553322111 1467788888888888655443
No 97
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.2e-07 Score=91.63 Aligned_cols=81 Identities=25% Similarity=0.197 Sum_probs=46.8
Q ss_pred CccEEeccCCcCcc--ccchhhhcccccceeeccCCCcc-ccchhhhcccCccEEecCCCCCccccch-hhhcCCCCCce
Q 038405 546 ALKVLDLSYNLDLT--QLPAEMGALINLRCLNLSNTSIE-ELPSEIMYLKNLKILLLDGMRHFHLIPA-RVFSSLLSLKV 621 (863)
Q Consensus 546 ~L~~L~Ls~~~~i~--~lp~~i~~L~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~ 621 (863)
.|++||||.. .++ .+-..+..+.+|+.|.|.++.+. .+-..|.+=.+|+.|+++.|..+..... -++.+++.|..
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5777777776 443 33334556667777777776554 3344455666677777776664443321 12455666666
Q ss_pred eeccCc
Q 038405 622 FSLFST 627 (863)
Q Consensus 622 L~l~~~ 627 (863)
|+++.|
T Consensus 265 LNlsWc 270 (419)
T KOG2120|consen 265 LNLSWC 270 (419)
T ss_pred cCchHh
Confidence 666544
No 98
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.5e-07 Score=92.63 Aligned_cols=179 Identities=21% Similarity=0.177 Sum_probs=111.6
Q ss_pred cccceeeccCCCcc--ccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhh
Q 038405 569 INLRCLNLSNTSIE--ELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDEL 646 (863)
Q Consensus 569 ~~L~~L~L~~~~i~--~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 646 (863)
..||+|||+.+.|+ .+---+..+.+|+.|.+.++..-..+... +.+-.+|+.|+++.|+-. ....+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~--------t~n~~--- 252 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGF--------TENAL--- 252 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccccc--------chhHH---
Confidence 35899999998776 45555778899999999988733334333 677788999998875310 00011
Q ss_pred hhhcccceeeEEeecCchhhhhhhccccccccccEEEecccCCccccc---c-cccCCcceeEeccCc--ccccCCCCCC
Q 038405 647 ECLGNQIYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID---L-RNMMHLETLNIVECS--LERVDPTFNG 720 (863)
Q Consensus 647 ~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~---l-~~~~~L~~L~l~~~~--l~~~~~~~~~ 720 (863)
......|+.|..|+++||......- . .--++|..|+|+||. +..-... .-
T Consensus 253 -----------------------~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL 308 (419)
T KOG2120|consen 253 -----------------------QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TL 308 (419)
T ss_pred -----------------------HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HH
Confidence 1112235567777888876644321 1 112578888888885 1111000 01
Q ss_pred CCCCCCCCEEEEecCCCCCCC--cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccccc
Q 038405 721 WTNFHNLHHLSIRVCPVIRDL--TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSL 791 (863)
Q Consensus 721 ~~~l~~L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~ 791 (863)
...+++|..|+|+.|..++.- ..+-+++.|++|.++.|+.+. |. .....+..|+|.+|++.+|
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~------~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PE------TLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hH------HeeeeccCcceEEEEeccc
Confidence 225788888888888776652 345678888888888888642 21 1234566777777777765
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.08 E-value=3e-05 Score=78.80 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=87.5
Q ss_pred ccc-ch-hhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 154 KTV-GA-DSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 154 ~~v-Gr-~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.|+ |. ...+..+..+......+.+.|+|+.|+|||+|++.+++... ..-..+.|+.+.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh-------------
Confidence 344 63 33444455554455567899999999999999999998762 2234566776542100
Q ss_pred CCcccccccChhhHHHHHHHHhccCcEEEEEcccccc---cccccc-cccCCC-CCCC-eEEEEeecchhhh--------
Q 038405 232 ISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWER---LDLSKT-GVSLSD-CQNG-SKIVFTTRSEEVC-------- 297 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~-~~~l~~-~~~g-s~iivTTr~~~v~-------- 297 (863)
.. ..+.+.+.. --+|++||+... ..|+.. ...+.. ...| .++|+||+...-.
T Consensus 87 ---------~~----~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ---------FV----PEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ---------hh----HHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 00 011112211 237899999753 234322 122211 1123 3799999865332
Q ss_pred -----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 298 -----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 298 -----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
+++++.++-.+.+.+++...... --+++..-|++.+.|..-++.
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~---l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFE---LPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhhcCCHHHHH
Confidence 66677777777776655332211 125666777777776554433
No 100
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=6.2e-05 Score=85.90 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=100.5
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCC--CEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCF--DLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
+++||-+..++.|.+++..+.+ ..+.++|..|+||||+|+.+++... -.... ...-. ..++.-...+.|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln-C~~~~~~~~~~~----~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN-CQGPDGQGGITA----TPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCcccccCCCC----CCCCccHHHHHHHcC
Confidence 5689999999999999987665 5678999999999999999876541 00000 00000 011111122222110
Q ss_pred cCCCcccc---cccChhhHHHHHHHHh-----ccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecc-hhhh-
Q 038405 230 LDISDYIW---NMKGEYDRAVEILISL-----RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRS-EEVC- 297 (863)
Q Consensus 230 l~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~-~~v~- 297 (863)
-....... .....++. ..+.+.. .++.-++|+|+|+.. ..+..+...+.......++|++|.+ ..+.
T Consensus 91 ~h~D~~eldaas~~~Vd~i-Reli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEV-QQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCceeecCcccccCHHHH-HHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 00000000 00111111 1122221 245568999999864 3344444444333445566655544 2222
Q ss_pred ----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 298 ----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 298 ----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
+++++.++..+.+...+...+... ..+....|++.++|.+--+.
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDAL 223 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 888999998888887764433222 25677889999999774433
No 101
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=3.8e-05 Score=87.77 Aligned_cols=180 Identities=15% Similarity=0.112 Sum_probs=100.6
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.++||-+..++.|.+.+..+.+. .+.++|..|+||||+|+.+++... -...+. ...+..-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-CETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-hccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 56899999999999999876654 468999999999999999987762 100000 011111122222211000
Q ss_pred CCcccc--c-ccChhhHHHHHHHH-----hccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecc-hhhh---
Q 038405 232 ISDYIW--N-MKGEYDRAVEILIS-----LRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRS-EEVC--- 297 (863)
Q Consensus 232 ~~~~~~--~-~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~-~~v~--- 297 (863)
...... . ....++ ...+.+. ..+++-++|+|+++.. .....+...+-......++|++|.+ ..+.
T Consensus 88 ~D~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 000000 0 011111 1222222 2456779999999854 2344443333333334555544444 3332
Q ss_pred --------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 298 --------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 298 --------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
+++++.++..+.+...+..... ....+....|++.++|.+--+.
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 8899999999888876533221 1225667889999999885433
No 102
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=9.6e-05 Score=83.95 Aligned_cols=174 Identities=16% Similarity=0.169 Sum_probs=99.8
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhcccccc------------------CCCCEEEEEEe
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVN------------------HCFDLVIFVAV 213 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 213 (863)
.++||-+..++.+.+++..+... .+.++|+.|+||||+|+.++....-.. +.|...+++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 56889999999999999876654 568999999999999999887651000 01111122221
Q ss_pred CCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEee
Q 038405 214 SKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTT 291 (863)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTT 291 (863)
+....+..+ +++++.+... -..+++-++|+|+++... ....+...+......+.+|++|
T Consensus 96 ~~~~~vd~i-r~l~~~~~~~------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 96 ASNTQVDAM-RELLDNAQYA------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cccCCHHHH-HHHHHHHhhC------------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 111111111 1111111000 013566799999998643 2334444443333456666655
Q ss_pred cchh-hh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH-HHHHHHH
Q 038405 292 RSEE-VC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL-ALITIAR 348 (863)
Q Consensus 292 r~~~-v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 348 (863)
.+.. +. +++++.++..+.+...+...... -..+....|++.++|.+- |+..+-.
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4432 21 77888888887777665332211 125667888999999774 4444333
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00011 Score=80.67 Aligned_cols=167 Identities=14% Similarity=0.168 Sum_probs=94.0
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccc-----cCCCCEEE-EEEeCCCCCHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDV-----NHCFDLVI-FVAVSKEGNLEKIQEV 225 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~F~~~~-wv~~~~~~~~~~~~~~ 225 (863)
.+++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+..... ...|...+ -+......+...+ ++
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HH
Confidence 5688999999999999987655 478899999999999999998765210 01121111 1111111111111 11
Q ss_pred HHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecch-hhh-----
Q 038405 226 IRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSE-EVC----- 297 (863)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~-~v~----- 297 (863)
+.+.+... -..+++-++|+|+++... .+..+...+......+.+|++|... .+.
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 22211100 012455689999987532 2444433333323345566555332 221
Q ss_pred ------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH
Q 038405 298 ------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL 341 (863)
Q Consensus 298 ------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 341 (863)
..++++++....+...+....... ..+....+++.++|.+-
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALR 204 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHH
Confidence 666777887777776654332211 15677888888888654
No 104
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=6.3e-05 Score=80.59 Aligned_cols=190 Identities=9% Similarity=0.018 Sum_probs=106.2
Q ss_pred ccCCccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhcccccc-CCCCEEEEEEeCCCCCHHHHHHHH
Q 038405 149 GMATEKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVN-HCFDLVIFVAVSKEGNLEKIQEVI 226 (863)
Q Consensus 149 ~~~~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i 226 (863)
|+....++|-++..+.+...+..+.. ..+.|+|..|+||||+|..+++...... ..+... ....++......+.|
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 34456789999999999999987664 4589999999999999999888762100 001111 011111111223333
Q ss_pred HHH-------cCCCcccc-----cccChhhHHHHHHHHh-----ccCcEEEEEccccccc--ccccccccCCCCCCCeEE
Q 038405 227 RKK-------LDISDYIW-----NMKGEYDRAVEILISL-----RRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKI 287 (863)
Q Consensus 227 ~~~-------l~~~~~~~-----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~i 287 (863)
... +..+.... .....++ +..+.+++ .+++-++|+|+++... ....+...+.....+..+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 221 00000000 0011222 23444444 3567799999998642 233333333222234444
Q ss_pred EEeecch-hhh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHH
Q 038405 288 VFTTRSE-EVC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIA 347 (863)
Q Consensus 288 ivTTr~~-~v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 347 (863)
|++|... .+. +.+++.++..+.+........ -..+....+++.++|.|..+..+.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444333 222 889999999999987432111 114557889999999998665443
No 105
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.01 E-value=0.00014 Score=71.48 Aligned_cols=149 Identities=17% Similarity=0.151 Sum_probs=85.5
Q ss_pred HHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhcccccc-------------------CCCCEEEEEEeC-CCCCHHHH
Q 038405 164 EVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVN-------------------HCFDLVIFVAVS-KEGNLEKI 222 (863)
Q Consensus 164 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~~~-~~~~~~~~ 222 (863)
.+.+.+..+.. ..+.++|+.|+||||+|+.+.+...... .+.|. .++... .....+.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45566666555 5789999999999999999887752110 11122 122111 11111111
Q ss_pred HHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchh-hh--
Q 038405 223 QEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEE-VC-- 297 (863)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~-v~-- 297 (863)
+++.+.+... -..+.+-++|+||++... ....+...+......+.+|++|++.. +.
T Consensus 82 -~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 82 -RELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred -HHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHH
Confidence 1122221110 012456689999987542 34445444444445666777776542 21
Q ss_pred ---------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH
Q 038405 298 ---------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL 341 (863)
Q Consensus 298 ---------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 341 (863)
+.+++.++..+.+... + . ..+.+..|++.++|.|.
T Consensus 143 i~sr~~~~~~~~~~~~~~~~~l~~~-g---i-----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 143 IRSRCQVLPFPPLSEEALLQWLIRQ-G---I-----SEEAAELLLALAGGSPG 186 (188)
T ss_pred HHhhcEEeeCCCCCHHHHHHHHHHc-C---C-----CHHHHHHHHHHcCCCcc
Confidence 7788888888877765 1 1 14678899999999885
No 106
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.01 E-value=1.4e-05 Score=84.79 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=63.3
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC--CCHHHHHHHHHHHcCCCcccccccChhhHHH--
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE--GNLEKIQEVIRKKLDISDYIWNMKGEYDRAV-- 247 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-- 247 (863)
..-..++|+|.+|+|||||++.+++... ..+|+..+|+.+.+. .++.++++.+...+-..............+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 3456789999999999999999999873 347999999999866 7899999999543322211000000011111
Q ss_pred -HHHHH--hccCcEEEEEccccc
Q 038405 248 -EILIS--LRRKKFVLLLDDVWE 267 (863)
Q Consensus 248 -~l~~~--l~~k~~LlVlDdv~~ 267 (863)
...++ -.+++++|++|++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 11122 257999999999965
No 107
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.99 E-value=4.3e-07 Score=99.76 Aligned_cols=79 Identities=24% Similarity=0.311 Sum_probs=46.5
Q ss_pred CccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeecc
Q 038405 546 ALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLF 625 (863)
Q Consensus 546 ~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 625 (863)
.|.+.+.++| .+..+-.++.-+++|++|||++|++...- .+..|++|+||||++|. +..+|.--...+ +|+.|.+.
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeec
Confidence 3555556666 55555566666667777777777666654 56666777777777665 555554111122 26666666
Q ss_pred Ccc
Q 038405 626 STE 628 (863)
Q Consensus 626 ~~~ 628 (863)
+|.
T Consensus 241 nN~ 243 (1096)
T KOG1859|consen 241 NNA 243 (1096)
T ss_pred ccH
Confidence 553
No 108
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=2.3e-06 Score=95.28 Aligned_cols=126 Identities=24% Similarity=0.322 Sum_probs=99.5
Q ss_pred ccccceEEEeccCCccccCC-CC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceee
Q 038405 498 SWREDFRLSLWGSSIEYLPE-TP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLN 575 (863)
Q Consensus 498 ~~~~~~~l~l~~~~~~~l~~-~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 575 (863)
....+..+.+.+|.++.+.. .. +++|++|++++|.+..+.. +..++.|+.|++++| .+..++. +..+..|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDISG-LESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhccC-Cccchhhhccc
Confidence 34578889999999999888 55 9999999999999988876 678889999999999 7877764 66699999999
Q ss_pred ccCCCccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchh
Q 038405 576 LSNTSIEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 576 L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
+++|.+..++.. ...+.+|+.+++.+|. +..+. + +..+..+..+++..|.+.
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~-~-~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNS-IREIE-G-LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCc-hhccc-c-hHHHHHHHHhhcccccce
Confidence 999999988765 6889999999999987 33332 1 334444444556555544
No 109
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=8.2e-06 Score=57.85 Aligned_cols=34 Identities=44% Similarity=0.578 Sum_probs=16.3
Q ss_pred ccceeeccCCCccccchhhhcccCccEEecCCCC
Q 038405 570 NLRCLNLSNTSIEELPSEIMYLKNLKILLLDGMR 603 (863)
Q Consensus 570 ~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~ 603 (863)
+|++|++++|+|+.+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4455555555555555445555555555555554
No 110
>PRK09087 hypothetical protein; Validated
Probab=97.95 E-value=9.1e-05 Score=74.48 Aligned_cols=132 Identities=15% Similarity=0.086 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILIS 252 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (863)
..+.+.|||..|+|||+|++.++... . ..|++.. .+...+.. .
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~---~-----~~~i~~~------~~~~~~~~-----------------------~ 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS---D-----ALLIHPN------EIGSDAAN-----------------------A 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc---C-----CEEecHH------HcchHHHH-----------------------h
Confidence 35679999999999999999888664 1 1233321 11111111 1
Q ss_pred hccCcEEEEEccccccc-ccccccccCC-CCCCCeEEEEeecchhhh-------------------cccCCHHHHHHHHh
Q 038405 253 LRRKKFVLLLDDVWERL-DLSKTGVSLS-DCQNGSKIVFTTRSEEVC-------------------VECLSPEAALDLFR 311 (863)
Q Consensus 253 l~~k~~LlVlDdv~~~~-~~~~~~~~l~-~~~~gs~iivTTr~~~v~-------------------l~~L~~~~a~~Lf~ 311 (863)
+.+ -+|++||+.... +-+.+...+. -...|..||+|++...-. +++++.++-.+++.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 278889996431 1111222221 123466799988743221 78899999999999
Q ss_pred HhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 312 YKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
+++....... -+++..-|++.+.|..-++..+
T Consensus 164 ~~~~~~~~~l---~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQLYV---DPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcCCCC---CHHHHHHHHHHhhhhHHHHHHH
Confidence 8875433222 2678888888888877666543
No 111
>PLN03150 hypothetical protein; Provisional
Probab=97.95 E-value=1.4e-05 Score=93.41 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=75.1
Q ss_pred CccEEeccCCcCccccchhhhcccccceeeccCCCcc-ccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeec
Q 038405 546 ALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIE-ELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSL 624 (863)
Q Consensus 546 ~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l 624 (863)
.++.|+|++|.....+|..+++|.+|++|+|++|.+. .+|..++++++|+.|+|++|.....+|.. +++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4788999999555589999999999999999999987 88999999999999999999866678877 899999999999
Q ss_pred cCcchh
Q 038405 625 FSTELI 630 (863)
Q Consensus 625 ~~~~~~ 630 (863)
++|.+.
T Consensus 498 s~N~l~ 503 (623)
T PLN03150 498 NGNSLS 503 (623)
T ss_pred cCCccc
Confidence 988654
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00014 Score=82.42 Aligned_cols=187 Identities=11% Similarity=0.105 Sum_probs=104.4
Q ss_pred ccccchhhHHHHHHHhhccCC-ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQS-EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.+++|-+..++.|.+.+..+. ...+.++|+.|+||||+|+.+++... -....+. ..++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 567899998888999887765 46788899999999999999887762 1110000 01111111111111100
Q ss_pred CCccccc---ccChhhHHHHHHHH-----hccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecch-hhh---
Q 038405 232 ISDYIWN---MKGEYDRAVEILIS-----LRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSE-EVC--- 297 (863)
Q Consensus 232 ~~~~~~~---~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~-~v~--- 297 (863)
....... ....++ +..+.+. ..+++-++|+|+++.. .....+...+........+|++|.+. .+.
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 0000000 001111 1122222 2356679999999764 23344444443323455666655543 322
Q ss_pred --------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh-HHHHHHHHHHh
Q 038405 298 --------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP-LALITIARAMS 351 (863)
Q Consensus 298 --------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l~ 351 (863)
+++++.++..+.+...+....... ..+.++.|++.++|.+ .|+..+...+.
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 778888888888877654332111 2567888999999864 67777665543
No 113
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.94 E-value=2.9e-07 Score=101.11 Aligned_cols=130 Identities=28% Similarity=0.247 Sum_probs=103.0
Q ss_pred CccccccceEEEeccCCccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhccccc
Q 038405 495 SADSWREDFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINL 571 (863)
Q Consensus 495 ~~~~~~~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L 571 (863)
+...|.++...++.+|.+..+.... ++.|+.|+|+.|++.... ++..+++|+.|||++| .+..+|.- ...+ +|
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L 234 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KL 234 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhh-hh
Confidence 3445778888888888888777766 899999999999988876 4889999999999999 88888862 2233 49
Q ss_pred ceeeccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcch
Q 038405 572 RCLNLSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 572 ~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 629 (863)
+.|++++|.+++|- ++.+|.+|+.||+++|-....-.-..++.|..|..|.+.||.+
T Consensus 235 ~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 235 QLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99999999999884 6899999999999998533222222267788899999998765
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00017 Score=82.61 Aligned_cols=184 Identities=13% Similarity=0.098 Sum_probs=101.8
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccCCCC--EEEEEEeCCCCCHHHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNHCFD--LVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
.+++|.+..++.+.+++..+... .+.++|+.|+||||+|+.+++... -..... ...+ +.+..-...+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~----~~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTI----DLCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCcc----ccCcccHHHHHHhcC
Confidence 56899999999999999876654 688999999999999999987651 111000 0000 001111111222221
Q ss_pred cCCCcccc---cccChhhHHHHHHHHh-----ccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEee-cchhhh-
Q 038405 230 LDISDYIW---NMKGEYDRAVEILISL-----RRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTT-RSEEVC- 297 (863)
Q Consensus 230 l~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTT-r~~~v~- 297 (863)
-....... .....++ +..+.+.+ .+++-++|+|++.... ....+...+.....++++|++| ....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 10000000 0111122 11222222 2455689999997543 3444444443334466666555 333332
Q ss_pred ----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHH
Q 038405 298 ----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALIT 345 (863)
Q Consensus 298 ----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 345 (863)
+..++.++....+...+....... ..+....|++.++|.+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 677888888888877664332211 246778889999998855443
No 115
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.93 E-value=2.1e-05 Score=85.86 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=91.5
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL 219 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 219 (863)
+++.|+++.++++.+.+.. ...+-+.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 4678999999999887632 123458999999999999999999876 3333 22211
Q ss_pred HHHHHHHHHHcCCCcccccccChhhHHHHHHHHh-ccCcEEEEEccccccc----------------ccccccccCC--C
Q 038405 220 EKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL-RRKKFVLLLDDVWERL----------------DLSKTGVSLS--D 280 (863)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~~~~~l~--~ 280 (863)
..+.... .+ ........+.+.. ...+.+|++|+++... .+..+...+. .
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 0111122222222 2467899999997531 0111111111 1
Q ss_pred CCCCeEEEEeecchhhh---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 281 CQNGSKIVFTTRSEEVC---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 281 ~~~gs~iivTTr~~~v~---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
...+.+||.||...... +...+.++..++|...+.......+. ....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV----DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC----CHHHHHHHcCCCC
Confidence 23466788888753321 56678899999998876543322111 2466777777764
No 116
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.1e-05 Score=57.12 Aligned_cols=41 Identities=46% Similarity=0.675 Sum_probs=34.8
Q ss_pred CCccEEeccCCcCccccchhhhcccccceeeccCCCccccch
Q 038405 545 GALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPS 586 (863)
Q Consensus 545 ~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~ 586 (863)
++|++|++++| .++.+|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999 888999889999999999999999987764
No 117
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.90 E-value=0.00015 Score=77.86 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=39.5
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++|.+...+.+..++..+.. .++.++|.+|+||||+|+.+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 5689999999999999977654 566669999999999999998875
No 118
>PRK05642 DNA replication initiation factor; Validated
Probab=97.90 E-value=0.00016 Score=73.42 Aligned_cols=139 Identities=17% Similarity=0.239 Sum_probs=80.6
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL 253 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (863)
...+.|+|..|+|||.|++.+++... ..-..++|++..+ +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 36789999999999999999988762 1224567776432 1110 01222333
Q ss_pred ccCcEEEEEcccccc---ccccc-ccccCCC-CCCCeEEEEeecchhhh-------------------cccCCHHHHHHH
Q 038405 254 RRKKFVLLLDDVWER---LDLSK-TGVSLSD-CQNGSKIVFTTRSEEVC-------------------VECLSPEAALDL 309 (863)
Q Consensus 254 ~~k~~LlVlDdv~~~---~~~~~-~~~~l~~-~~~gs~iivTTr~~~v~-------------------l~~L~~~~a~~L 309 (863)
++-. +||+||+... ..|+. +...+.. ...|..||+||+...-. +++++.++-.+.
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3322 6788999632 24432 2222221 23466789988854432 567777777777
Q ss_pred HhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHH
Q 038405 310 FRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALIT 345 (863)
Q Consensus 310 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 345 (863)
+..++....... -+++..-|++.+.|..-++..
T Consensus 175 l~~ka~~~~~~l---~~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 175 LQLRASRRGLHL---TDEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHH
Confidence 775553322111 156677777777776544443
No 119
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.89 E-value=7.5e-05 Score=74.85 Aligned_cols=171 Identities=12% Similarity=0.106 Sum_probs=107.5
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEE-EEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVI-FVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
++++|-+..++-+.+.+.....+....+|++|.|||+-|..++... --.+-|.+++ =.++|......-+-..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki----- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI----- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh-----
Confidence 5678999999999999988788999999999999999998888765 2234554433 24444443222100000
Q ss_pred CCcccccccChhhHHHHHHHHh--ccCc-EEEEEcccccc--cccccccccCCCCCCCeEEEEeecchhhh---------
Q 038405 232 ISDYIWNMKGEYDRAVEILISL--RRKK-FVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEEVC--------- 297 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~v~--------- 297 (863)
.+............ .-++ -.+|||+++.. +.|..+..........++.|+.|......
T Consensus 110 --------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 110 --------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred --------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 01111110000000 0123 46789999864 56877766665555666655544443332
Q ss_pred ---cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 298 ---VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 298 ---l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
.++|..++...-+...+..++...+ .+..+.|++.++|.-
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDL 224 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcH
Confidence 7888999998888888765543332 567889999998854
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00022 Score=81.82 Aligned_cols=190 Identities=9% Similarity=0.063 Sum_probs=100.5
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEE-eCCCCCHHHHHHHHHHHc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVA-VSKEGNLEKIQEVIRKKL 230 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~~~l 230 (863)
.++||-+..+..+.+++..+.+. .+.++|+.|+||||+|+.+++... -...++...|.. +...++.-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 56899999999999999876654 488999999999999998887651 111111001110 001111111111111110
Q ss_pred CCCccccc---ccChhhHHHHHHHHh-----ccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeec-chhhh--
Q 038405 231 DISDYIWN---MKGEYDRAVEILISL-----RRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTR-SEEVC-- 297 (863)
Q Consensus 231 ~~~~~~~~---~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr-~~~v~-- 297 (863)
......++ ....++.. .+.+.+ .+++-++|+|+++... ....+...+......+.+|++|. ...+.
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 00000000 01112222 222222 3456688999987643 34444444433334556555553 33332
Q ss_pred ---------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh-HHHHHHH
Q 038405 298 ---------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP-LALITIA 347 (863)
Q Consensus 298 ---------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 347 (863)
+.+++.++....+...+....... ..+.+..|++.++|.. .|+..+-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 677888888777776553222111 2567888999999955 3444433
No 121
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00029 Score=81.60 Aligned_cols=183 Identities=14% Similarity=0.088 Sum_probs=101.9
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
+++||.+..++.+..++..+.+ ..+.++|..|+||||+|+.+++... ...... ....++.-...+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 5689999999999999877654 4568999999999999999987651 100000 0011111222333322211
Q ss_pred CCcccc---cccChhhHHHHHHHHh-----ccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecch-hhh---
Q 038405 232 ISDYIW---NMKGEYDRAVEILISL-----RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSE-EVC--- 297 (863)
Q Consensus 232 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~-~v~--- 297 (863)
...... .....++ ...+.+.+ .+++-++|+|+++.. .....+...+......+.+|++|.+. .+.
T Consensus 89 ~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 110000 0011111 12222222 245678999998754 33444444443333456666666433 222
Q ss_pred --------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 298 --------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 298 --------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
+..++.++....+...+....... ..+.+..|++.++|.+..+...
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 666788887777776654332111 2567889999999988654443
No 122
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00031 Score=80.04 Aligned_cols=187 Identities=12% Similarity=0.084 Sum_probs=101.2
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
+++||.+..++.|.+++..+.+. .+.++|+.|+||||+|+.+++...- ....+. .+++.-...+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~~-------~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC-AQGPTA-------TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCCC-------CcccccHHHHHhhcccC
Confidence 56899999999999999887655 4689999999999999998876510 010000 00000011111110000
Q ss_pred CCccc--cc---ccChhhHHHHHHHH-----hccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEee-cchhhh-
Q 038405 232 ISDYI--WN---MKGEYDRAVEILIS-----LRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTT-RSEEVC- 297 (863)
Q Consensus 232 ~~~~~--~~---~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTT-r~~~v~- 297 (863)
...+. .+ ....++ ...+.+. ..+++-++|+|++... .....+...+........+|++| ....+.
T Consensus 85 ~~~dvieidaas~~gvd~-iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDD-TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHH-HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 00000 00 001111 1122221 1245668899998743 33444444444334455555544 433332
Q ss_pred ----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH-HHHHHHHHHh
Q 038405 298 ----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL-ALITIARAMS 351 (863)
Q Consensus 298 ----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~l~ 351 (863)
+.+++.++..+.+...+....... ..+....|++.++|.+- |+..+-.++.
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 778888888877776654332111 24567888899999773 5555544443
No 123
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00024 Score=84.21 Aligned_cols=178 Identities=11% Similarity=0.045 Sum_probs=97.2
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.++||.+..++.|..++..+.+. .+.++|..|+||||+|+.+++... -...... ..++.-...+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~-C~~~~~~-------~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN-CVEGPTS-------TPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC-cccCCCC-------CCCcccHHHHHHHcCCC
Confidence 46889999999999999876654 578999999999999999887762 1010000 00000000111110000
Q ss_pred CCcc--cc---cccChhhHHHHHHHH-----hccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecc-hhhh-
Q 038405 232 ISDY--IW---NMKGEYDRAVEILIS-----LRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRS-EEVC- 297 (863)
Q Consensus 232 ~~~~--~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~-~~v~- 297 (863)
...+ .+ .....++. ..+.+. ..+++-++|||+++.. .....+...+......+.+|++|.+ ..+.
T Consensus 87 ~~~dv~eidaas~~~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCcEEEecccccCCHHHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 0000 00 00011111 112221 2356668899999864 3344444444443446666655543 3332
Q ss_pred ----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHH
Q 038405 298 ----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLA 342 (863)
Q Consensus 298 ----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 342 (863)
+..++.++..+.+...+...... -..+....|++.++|.+..
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 67788888887777665332211 1245667889999998743
No 124
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.83 E-value=0.00013 Score=78.89 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=71.5
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDI 232 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (863)
.++++.+..++.+...|... +.|.++|++|+|||++|+.+++.. .....|+.+.||++++.++.......+.-. +.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 45778899999999988653 567889999999999999999887 334578889999999988877665422100 00
Q ss_pred CcccccccChhhHHHHHHHHh--ccCcEEEEEcccccc
Q 038405 233 SDYIWNMKGEYDRAVEILISL--RRKKFVLLLDDVWER 268 (863)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~ 268 (863)
. .... .......+...- .+++++||+|++...
T Consensus 251 g---y~~~-~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 G---FRRK-DGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred C---eEec-CchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 0000 001111112221 247899999999754
No 125
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.82 E-value=0.00019 Score=71.99 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=79.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL 253 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (863)
...+.|+|..|+|||.|.+++++...+ ...=..++|++ ..+....+...+... ....+++.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~~~~~-----------~~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADALRDG-----------EIEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHHHHTT-----------SHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHHHHcc-----------cchhhhhhh
Confidence 456899999999999999999998732 12223466764 345555555544211 123344445
Q ss_pred ccCcEEEEEccccccc---cccc-ccccCC-CCCCCeEEEEeecchhhh-------------------cccCCHHHHHHH
Q 038405 254 RRKKFVLLLDDVWERL---DLSK-TGVSLS-DCQNGSKIVFTTRSEEVC-------------------VECLSPEAALDL 309 (863)
Q Consensus 254 ~~k~~LlVlDdv~~~~---~~~~-~~~~l~-~~~~gs~iivTTr~~~v~-------------------l~~L~~~~a~~L 309 (863)
++ -=+|++||++... .|++ +...+. -...|-+||+|++...-. +++.+.++-.++
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 43 3478899997642 2222 111111 113466899999765443 556666666666
Q ss_pred HhHhhCccccCCCCChHHHHHHHHHHcCCChH
Q 038405 310 FRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL 341 (863)
Q Consensus 310 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 341 (863)
+.+.+....... -+++++-|++.+.+..-
T Consensus 175 l~~~a~~~~~~l---~~~v~~~l~~~~~~~~r 203 (219)
T PF00308_consen 175 LQKKAKERGIEL---PEEVIEYLARRFRRDVR 203 (219)
T ss_dssp HHHHHHHTT--S----HHHHHHHHHHTTSSHH
T ss_pred HHHHHHHhCCCC---cHHHHHHHHHhhcCCHH
Confidence 666654333221 14555555555554443
No 126
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00039 Score=77.48 Aligned_cols=171 Identities=13% Similarity=0.151 Sum_probs=97.4
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhcccccc--------------------CCCCEEEEE
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVN--------------------HCFDLVIFV 211 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~F~~~~wv 211 (863)
++++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+++...... .+++. +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~-~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV-LEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce-EEe
Confidence 5689999999999999987665 5688999999999999999887652100 01111 111
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCeEEEE
Q 038405 212 AVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVF 289 (863)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iiv 289 (863)
..........+ +++.+.+.. .-..+++-++|+|+++... ....+...+.....+..+|+
T Consensus 96 ~g~~~~gid~i-r~i~~~l~~------------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 96 DGASHRGIEDI-RQINETVLF------------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred eccccCCHHHH-HHHHHHHHh------------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 11011111111 011111100 0112567789999987542 23334333333334556666
Q ss_pred eecch-hhh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh-HHHHHH
Q 038405 290 TTRSE-EVC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP-LALITI 346 (863)
Q Consensus 290 TTr~~-~v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 346 (863)
+|... .+. +.++++++..+.+...+...... -..+.++.|++.++|.+ .|+..+
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~---i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE---TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66432 221 77788988888777665432211 12567888999999966 344443
No 127
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.82 E-value=0.00017 Score=73.23 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=31.7
Q ss_pred cccc-chhh-HHHHHHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTV-GADS-KLDEVWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~v-Gr~~-~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++|+ |... .+..+.++... ...+.+.|+|..|+|||+||+.+++..
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445 5433 33444444432 345678999999999999999999875
No 128
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.0005 Score=79.42 Aligned_cols=168 Identities=12% Similarity=0.167 Sum_probs=99.8
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhcccc--------------------ccCCCCEEEEE
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLD--------------------VNHCFDLVIFV 211 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~F~~~~wv 211 (863)
++++|.+..++.+..++..+... .+.++|..|+||||+|+.++....- ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 56899999999999999887664 4789999999999999887775410 0112332 122
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccc--cccccccccCCCCCCCeEEEE
Q 038405 212 AVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVF 289 (863)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv 289 (863)
..+....+..+. ++++++.... ..+++-++|+|++... ..+..+...+.....++.+|+
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIPP------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhCc------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 222222222222 1112111110 1245568899998764 234455444443344566665
Q ss_pred ee-cchhhh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHH
Q 038405 290 TT-RSEEVC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLAL 343 (863)
Q Consensus 290 TT-r~~~v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 343 (863)
+| +...+. +.+++.++....+...+....... ..+.+..|++.++|..--+
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i---~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA---EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 55 333332 778889988888877664333211 2467889999999976433
No 129
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=0.00012 Score=78.24 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=29.9
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCC-Cccccch
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNT-SIEELPS 586 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~lP~ 586 (863)
|++++.|++++|.++.+|. + ..+|+.|.+++|..+..+|..+. .+|++|++++| .+..+|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 4455555555555555541 1 12455555555545555554332 34555555555 4444443
No 130
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=4e-06 Score=73.32 Aligned_cols=89 Identities=24% Similarity=0.307 Sum_probs=60.5
Q ss_pred CCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEecC
Q 038405 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLLD 600 (863)
Q Consensus 521 ~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~ 600 (863)
..|...++++|.++.+|+.+-.+++-+..|+|++| .+..+|.++..++.|+.|+++.|.+...|..+..|.+|-.|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 45566677777777777776666667777777777 67777777777777777777777777777776667777777766
Q ss_pred CCCCccccchh
Q 038405 601 GMRHFHLIPAR 611 (863)
Q Consensus 601 ~~~~l~~lp~~ 611 (863)
++. ...+|-.
T Consensus 132 ~na-~~eid~d 141 (177)
T KOG4579|consen 132 ENA-RAEIDVD 141 (177)
T ss_pred CCc-cccCcHH
Confidence 665 4444443
No 131
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.78 E-value=0.00057 Score=67.55 Aligned_cols=50 Identities=18% Similarity=0.392 Sum_probs=39.6
Q ss_pred ccCCccccchhhHHHHHHH----hhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 149 GMATEKTVGADSKLDEVWG----CIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 149 ~~~~~~~vGr~~~~~~l~~----~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.+-+.++|.|..++.|++ ++......-+.+||..|.|||++++++.+.+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 3444678999998888775 3344455567889999999999999999887
No 132
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.77 E-value=0.00078 Score=68.89 Aligned_cols=182 Identities=16% Similarity=0.087 Sum_probs=108.9
Q ss_pred hHHHHHHHhhcc---CCceEEEEEcCCCChHHHHhhhhhhccccccCCC----CEEEEEEeCCCCCHHHHHHHHHHHcCC
Q 038405 160 SKLDEVWGCIED---QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF----DLVIFVAVSKEGNLEKIQEVIRKKLDI 232 (863)
Q Consensus 160 ~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (863)
+.++++.+++.. ...+-+.|+|.+|+|||++++++...+- ....- -.++.|.....++...+...|+.+++.
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 345555555643 3455699999999999999999987662 11111 157788888899999999999999998
Q ss_pred CcccccccChhhHHHHHHHHhcc-CcEEEEEccccccc--------ccccccccCCCCCCCeEEEEeecchhhh------
Q 038405 233 SDYIWNMKGEYDRAVEILISLRR-KKFVLLLDDVWERL--------DLSKTGVSLSDCQNGSKIVFTTRSEEVC------ 297 (863)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~--------~~~~~~~~l~~~~~gs~iivTTr~~~v~------ 297 (863)
+.. ...+...+.......++. +--+||+|.+.+.- +.-.....+...-.=+-|.|-|+.-.-+
T Consensus 123 P~~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 123 PYR--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred ccC--CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 863 233444445555555654 55689999997631 1111111222222334455555544333
Q ss_pred ---------cccCCH-HHHHHHHhHhhC--ccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 298 ---------VECLSP-EAALDLFRYKVG--EDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 298 ---------l~~L~~-~~a~~Lf~~~~~--~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
+..... +|...|+..... .-...+.-...++++.|...++|+.--+.
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 333333 344445433221 11112223457899999999999874433
No 133
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00052 Score=76.97 Aligned_cols=171 Identities=10% Similarity=0.123 Sum_probs=98.9
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhcccccc-CC----------------CC-EEEEEEe
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVN-HC----------------FD-LVIFVAV 213 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~----------------F~-~~~wv~~ 213 (863)
+++||-+..++.+...+..+... ++.++|..|+||||+|+.+++...... .. ++ .++.+..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 56899999999999999777655 568999999999999998876641000 00 00 1111111
Q ss_pred CCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEee
Q 038405 214 SKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTT 291 (863)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTT 291 (863)
+....+..+.. +++..... -..+++-++|+|++... .....+...+-.....+++|++|
T Consensus 94 as~~gId~IRe-lie~~~~~------------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 94 ASNRGIDDIRE-LIEQTKYK------------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred ccccCHHHHHH-HHHHHhhC------------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 11111111111 11110000 01145668899999754 23334444443334567777666
Q ss_pred cchhhh------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHH
Q 038405 292 RSEEVC------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALIT 345 (863)
Q Consensus 292 r~~~v~------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 345 (863)
.+..-. +.+++.++....+...+...+... .++.+..|++.++|.+--+..
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHH
Confidence 654211 788888888888776654332211 256788999999998844433
No 134
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.0015 Score=69.59 Aligned_cols=184 Identities=10% Similarity=0.119 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHhhcc----CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 038405 152 TEKTVGADSKLDEVWGCIED----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIR 227 (863)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (863)
+...+||+.+++.+.+++.. ...+.+.|.|-+|.|||.+...++.+...-... -.++++....-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 35678999999999999844 566789999999999999999999887211111 2456776665455667777777
Q ss_pred HHcCCCcccccccChhhHHHHHHHHhccC--cEEEEEccccccc--ccccccccCC-CCCCCeEEEEeecchhhh-----
Q 038405 228 KKLDISDYIWNMKGEYDRAVEILISLRRK--KFVLLLDDVWERL--DLSKTGVSLS-DCQNGSKIVFTTRSEEVC----- 297 (863)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~--~~~~~~~~l~-~~~~gs~iivTTr~~~v~----- 297 (863)
..+..... ......+....+.+..++. -+|+|+|.++.-. .-..+...|- ..-++||+|+.---...-
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 66511100 0112244555666666543 6899999987531 1111111121 123466665432211111
Q ss_pred ----------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 298 ----------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 298 ----------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
..+.+.++-.++|..+..... ..+......+-+++||.|.-
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhccCc
Confidence 677899999999998875432 12223345555566655443
No 135
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.76 E-value=0.00015 Score=74.86 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=80.4
Q ss_pred ccccchhhHHHHHHHhhccCCc---eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE---QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~---~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
+.+.+|+..+..+..++.+... ..|-|+|-+|.|||.+++++.+.. . - ..+|+++-+.++..-++.+|+.+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n--~---~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N--L---ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C--C---cceeeehHHhccHHHHHHHHHHH
Confidence 4567999999999999965432 345789999999999999999876 2 2 35899999999999999999999
Q ss_pred cCCCcccccc-cC-hhh---HHHHHHH--Hh--ccCcEEEEEccccccccccc
Q 038405 230 LDISDYIWNM-KG-EYD---RAVEILI--SL--RRKKFVLLLDDVWERLDLSK 273 (863)
Q Consensus 230 l~~~~~~~~~-~~-~~~---~~~~l~~--~l--~~k~~LlVlDdv~~~~~~~~ 273 (863)
.+..+..... .. -+. ....+.+ .. +++.++||||+++.-.+.+.
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a 132 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDA 132 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccch
Confidence 8632211111 11 111 1222222 11 14689999999987655544
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00063 Score=78.57 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=100.0
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.+++|.+..+..|..++..+.. ..+.++|..|+||||+|+.+++... - ...+.. ....+..-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-c-~~~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN-C-LNSDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc-C-CCcCCC----CCCCCcccHHHHHHhcCCC
Confidence 5678999999999999977654 5788999999999999999988762 1 111000 0011111122222222111
Q ss_pred CCccccc---ccChhhHHHHHHHHh-----ccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecchh-hh---
Q 038405 232 ISDYIWN---MKGEYDRAVEILISL-----RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEE-VC--- 297 (863)
Q Consensus 232 ~~~~~~~---~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~-v~--- 297 (863)
....... ....+ .+..+.+.+ .+++-++|+|+++.. ..+..+...+........+|++|.+.. +.
T Consensus 90 ~D~~ei~~~~~~~vd-~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVD-NIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHH-HHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 1000000 01111 112222221 245668899999854 334445444433334455555554332 22
Q ss_pred --------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 298 --------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 298 --------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
+..++.++....+...+....... ..+.+..|++.++|.+..+...
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 567788887777766554322111 1456888999999987544433
No 137
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00048 Score=79.45 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=97.2
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.+++|.+..++.+..++..+++ ..+.++|+.|+||||+|+.++....-...... + .++ ...... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~---~----~pC---~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL---L----EPC---QECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC---C----Cch---hHHHHh---hc
Confidence 5688999999999999977654 45679999999999999998876511000000 0 000 000000 00
Q ss_pred CCcccc--cc---cChhhHHHHHHHHh-----ccCcEEEEEcccccc--cccccccccCCCCCCCeEEEE-eecchhhh-
Q 038405 232 ISDYIW--NM---KGEYDRAVEILISL-----RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVF-TTRSEEVC- 297 (863)
Q Consensus 232 ~~~~~~--~~---~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-TTr~~~v~- 297 (863)
...... .. ...++ ++.+.+.+ .+++-++|+|++... ..+..+...+-.......+|+ ||+...+.
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 000000 00 01111 22232222 256678999998753 334444444433333445454 44433332
Q ss_pred ----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH-HHHHHH
Q 038405 298 ----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL-ALITIA 347 (863)
Q Consensus 298 ----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 347 (863)
+.+++.++..+.+...+...... -..+.++.|++.++|.+- |+..+-
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~---id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENIS---YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77888888888777655332211 124567889999988764 444333
No 138
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.0007 Score=75.98 Aligned_cols=166 Identities=11% Similarity=0.084 Sum_probs=93.1
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccC------------------CCCEEEEEEe
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNH------------------CFDLVIFVAV 213 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~F~~~~wv~~ 213 (863)
.+++|-+..+..+.+++..+... ++.++|+.|+||||+|+.++........ .|...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 46789999999999999776544 5678999999999999998876410000 0111111211
Q ss_pred CCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHh-----ccCcEEEEEcccccc--cccccccccCCCCCCCeE
Q 038405 214 SKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL-----RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSK 286 (863)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~ 286 (863)
+.... .+ ....+.+.. .+++-++|+|+++.. .....+...+........
T Consensus 96 as~~g-----------------------vd-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 96 ASNRG-----------------------ID-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred ccCCC-----------------------HH-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11111 11 111222222 356679999998754 233344333433334555
Q ss_pred EEEeecc-hhhh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHH
Q 038405 287 IVFTTRS-EEVC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALIT 345 (863)
Q Consensus 287 iivTTr~-~~v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 345 (863)
+|++|.+ ..+. +.+++.++....+...+...... -..+.+..|++.++|.+-.+..
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 5555533 2221 66677777777666655332211 1245667788888886654433
No 139
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.71 E-value=0.00012 Score=80.41 Aligned_cols=160 Identities=18% Similarity=0.243 Sum_probs=89.0
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL 219 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 219 (863)
+++.|+++.++++.+.+.. ...+-|.++|++|+|||++|+++++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 4577999999999887621 234568899999999999999999876 222 222221
Q ss_pred HHHHHHHHHHcCCCcccccccChhhHHHHHHHHh-ccCcEEEEEccccccc------------c----cccccccCC--C
Q 038405 220 EKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL-RRKKFVLLLDDVWERL------------D----LSKTGVSLS--D 280 (863)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~--~ 280 (863)
..+. .... . ........+.+.. ...+.+|++||++... . +..+...+. .
T Consensus 199 ~~l~----~~~~-------g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELV----QKFI-------G-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHh----Hhhc-------c-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 1110 0 1111222222222 3467899999997521 0 111111111 1
Q ss_pred CCCCeEEEEeecchhhh---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 281 CQNGSKIVFTTRSEEVC---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 281 ~~~gs~iivTTr~~~v~---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
...+..||.||...... +...+.++-.++|+..........+.+ ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 12356677777654322 567778888888887765432222222 355666666653
No 140
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=8.8e-05 Score=79.30 Aligned_cols=82 Identities=24% Similarity=0.360 Sum_probs=59.9
Q ss_pred ccceEEEeccCCccccCCCCCCCccEEEeecc-cccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccC
Q 038405 500 REDFRLSLWGSSIEYLPETPCPHLQTLLVRFT-VLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSN 578 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~-~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 578 (863)
....+|.+.++.++.+|. ..++|++|.+.+| .+..+|.. + ..+|++|++++|..+..+|.. |++|++++
T Consensus 52 ~~l~~L~Is~c~L~sLP~-LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~ 121 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV-LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLEIKG 121 (426)
T ss_pred cCCCEEEeCCCCCcccCC-CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEEeCC
Confidence 466788999888888883 3567999999987 66777754 2 358999999998778888864 56666665
Q ss_pred C---Cccccchhhhcc
Q 038405 579 T---SIEELPSEIMYL 591 (863)
Q Consensus 579 ~---~i~~lP~~i~~L 591 (863)
+ .+..+|+++..|
T Consensus 122 n~~~~L~~LPssLk~L 137 (426)
T PRK15386 122 SATDSIKNVPNGLTSL 137 (426)
T ss_pred CCCcccccCcchHhhe
Confidence 5 366777765443
No 141
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.68 E-value=0.0002 Score=74.35 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=32.7
Q ss_pred cccchhhHHHHHHHh---hc------------cCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGC---IE------------DQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~---L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|.+..+++|.+. .. .+...-+.++|++|+||||+|+.+++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 478887776666543 21 1234567899999999999999998764
No 142
>PF14516 AAA_35: AAA-like domain
Probab=97.67 E-value=0.0028 Score=68.04 Aligned_cols=189 Identities=14% Similarity=0.172 Sum_probs=114.7
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC-----CCHHH----HH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE-----GNLEK----IQ 223 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-----~~~~~----~~ 223 (863)
+..|.|...-+++.+.+.++ -..+.|.|+-.+|||||...+.+... +..+ .++++++..- .+..+ +.
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~--~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQ--QQGY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHH--HCCC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 45679997778888888664 36889999999999999999988872 2333 4557776542 23444 44
Q ss_pred HHHHHHcCCCccc---cc--ccChhhHHHHHHHHh-c--cCcEEEEEccccccccc----ccccccC----------CCC
Q 038405 224 EVIRKKLDISDYI---WN--MKGEYDRAVEILISL-R--RKKFVLLLDDVWERLDL----SKTGVSL----------SDC 281 (863)
Q Consensus 224 ~~i~~~l~~~~~~---~~--~~~~~~~~~~l~~~l-~--~k~~LlVlDdv~~~~~~----~~~~~~l----------~~~ 281 (863)
..|.++++..... +. ..........+.+.+ + +++.+|++|+|+..... .++...+ +..
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 5555566554311 00 112223333444432 2 58999999999853221 1111111 000
Q ss_pred CCCeEEEEee-cchhhh--------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 282 QNGSKIVFTT-RSEEVC--------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 282 ~~gs~iivTT-r~~~v~--------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
.+=+-|++.+ +..... +.+++.+|..+|....-..- . ....++|...+||+|.-+..+
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~---~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----S---QEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----C---HHHHHHHHHHHCCCHHHHHHH
Confidence 1111122221 111111 88999999999988763221 1 333899999999999999999
Q ss_pred HHHHhC
Q 038405 347 ARAMSS 352 (863)
Q Consensus 347 ~~~l~~ 352 (863)
+..+..
T Consensus 240 ~~~l~~ 245 (331)
T PF14516_consen 240 CYLLVE 245 (331)
T ss_pred HHHHHH
Confidence 999976
No 143
>CHL00181 cbbX CbbX; Provisional
Probab=97.66 E-value=0.00058 Score=71.34 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+.++|.+|+||||+|+.++...
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998764
No 144
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.65 E-value=0.00031 Score=78.32 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=94.6
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL 253 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (863)
..-+.|+|..|+|||+|++++++.... ...-..+++++ ..++...+...++... .....+++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~~---------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKTH---------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHhh---------hHHHHHHHHh
Confidence 356889999999999999999986521 12223445554 3456666666553210 1223344444
Q ss_pred ccCcEEEEEccccccc---cc-ccccccCCC-CCCCeEEEEeecchhhh-------------------cccCCHHHHHHH
Q 038405 254 RRKKFVLLLDDVWERL---DL-SKTGVSLSD-CQNGSKIVFTTRSEEVC-------------------VECLSPEAALDL 309 (863)
Q Consensus 254 ~~k~~LlVlDdv~~~~---~~-~~~~~~l~~-~~~gs~iivTTr~~~v~-------------------l~~L~~~~a~~L 309 (863)
+ +.-+||+||+.... .+ +.+...+.. ...|..||+|+...... +++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 4 34478899996432 12 223222221 23345788887654322 788899999999
Q ss_pred HhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHH
Q 038405 310 FRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIA 347 (863)
Q Consensus 310 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 347 (863)
+.+++...... ..-.+++..-|++.++|.|-.+..+.
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99887543211 11236788999999999986665544
No 145
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=1e-05 Score=70.88 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=84.9
Q ss_pred ccEEEeecccccccchh--hhhcCCCccEEeccCCcCccccchhhhcc-cccceeeccCCCccccchhhhcccCccEEec
Q 038405 523 LQTLLVRFTVLEIFPHR--FFESMGALKVLDLSYNLDLTQLPAEMGAL-INLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 523 Lr~L~l~~~~l~~l~~~--~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L-~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
+..++|+.|.+..++.. .+....+|...+|++| ..+.+|+.+... +-+.+|++++|.|+.+|.++..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 44566777765545432 2456678889999999 899999988754 5899999999999999999999999999999
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchhhh
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELIEL 632 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 632 (863)
+.|. +...|.- |..|.+|-.|+..+|...++
T Consensus 108 ~~N~-l~~~p~v-i~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 108 RFNP-LNAEPRV-IAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred ccCc-cccchHH-HHHHHhHHHhcCCCCccccC
Confidence 9998 7777765 55688888888877665444
No 146
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0016 Score=74.45 Aligned_cols=180 Identities=13% Similarity=0.044 Sum_probs=96.9
Q ss_pred ccccchhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.+++|-+..++.+..++.++... .+.++|+.|+||||+|+.+++... -...... ..+... ...+.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~---~pC~~C----~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTP---MPCGEC----SSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCC---CCCccc----hHHHHHHcCCC
Confidence 56899999999999999876554 588999999999999999988752 1110000 000000 00011111000
Q ss_pred CCccccc---ccChhhHHHHHHHH-----hccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecch-hhh---
Q 038405 232 ISDYIWN---MKGEYDRAVEILIS-----LRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSE-EVC--- 297 (863)
Q Consensus 232 ~~~~~~~---~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~-~v~--- 297 (863)
....... ....++.. .+.+. ..+++-++|+|++.... .+..+...+......+.+|++|... .+.
T Consensus 88 ~dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 0000000 01111111 12211 23566689999987543 3444544444434566666655432 221
Q ss_pred --------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 298 --------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 298 --------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
..+++.++..+.+...+...... -..+.+..|++.++|.+-.+.
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~---id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK---YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 66677777777776655332211 125667778888888774333
No 147
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.59 E-value=0.00036 Score=76.62 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=36.3
Q ss_pred cccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++..
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456899999888887631 234568899999999999999999976
No 148
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0013 Score=75.93 Aligned_cols=186 Identities=15% Similarity=0.165 Sum_probs=97.8
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
+++||.+..++.+.+++..+.+ ..+.++|..|+||||+|+.+++... -....+ ...++.-.....|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~-c~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN-CEQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 5689999999999999987665 4568999999999999999887651 111000 000000011111111000
Q ss_pred CCccccc---ccChhhHHHHHHHHh-----ccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeec-chhhh---
Q 038405 232 ISDYIWN---MKGEYDRAVEILISL-----RRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTR-SEEVC--- 297 (863)
Q Consensus 232 ~~~~~~~---~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr-~~~v~--- 297 (863)
......+ ....++ +..+.+.+ .+++-++|+|+++... ....+...+-.....+.+|++|. ...+.
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 0000000 001111 12222222 2455688999997542 23344433333334556665544 33332
Q ss_pred --------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh-HHHHHHHHHH
Q 038405 298 --------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP-LALITIARAM 350 (863)
Q Consensus 298 --------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 350 (863)
+.+++.++....+...+....... ..+....|++.++|.. .|+..+-..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 667888887777766553322111 2566778888888865 4444443333
No 149
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.0017 Score=64.63 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=39.4
Q ss_pred ccccchhhHHHHHHHhhc-----cCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIE-----DQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|||.++.++++.=++. +...--|.++|++|.||||||.-+++..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 579999999888876663 3556779999999999999999999987
No 150
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.54 E-value=0.00099 Score=69.66 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
-+.++|.+|+||||+|+.++...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999998877655
No 151
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=2.9e-05 Score=76.96 Aligned_cols=81 Identities=22% Similarity=0.212 Sum_probs=54.3
Q ss_pred CccEEeccCCcCccccch--hh-hcccccceeeccCCCcc---ccchhhhcccCccEEecCCCCCccccchhhh-cCCCC
Q 038405 546 ALKVLDLSYNLDLTQLPA--EM-GALINLRCLNLSNTSIE---ELPSEIMYLKNLKILLLDGMRHFHLIPARVF-SSLLS 618 (863)
Q Consensus 546 ~L~~L~Ls~~~~i~~lp~--~i-~~L~~L~~L~L~~~~i~---~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i-~~L~~ 618 (863)
.+..|.+.++ .+...-. .| ....+++.|||.+|.|+ ++..-+.+|+.|++|+++.|+ +...-.. . -.+.+
T Consensus 46 a~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~-lp~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKS-LPLPLKN 122 (418)
T ss_pred chhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCcccc-Ccccccc
Confidence 4556666676 5554432 23 25788999999999887 455556799999999999886 3221111 1 13468
Q ss_pred CceeeccCcch
Q 038405 619 LKVFSLFSTEL 629 (863)
Q Consensus 619 L~~L~l~~~~~ 629 (863)
|++|-+.++++
T Consensus 123 l~~lVLNgT~L 133 (418)
T KOG2982|consen 123 LRVLVLNGTGL 133 (418)
T ss_pred eEEEEEcCCCC
Confidence 88888887653
No 152
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.52 E-value=0.00059 Score=81.42 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=40.6
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++||+++++++++.|......-+.++|.+|+|||++|+.++.+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999977656667899999999999999999876
No 153
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.51 E-value=0.00087 Score=74.66 Aligned_cols=145 Identities=20% Similarity=0.190 Sum_probs=82.5
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCC-EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFD-LVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILIS 252 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (863)
..-+.|+|.+|+|||+|++++++... ....+ .++|++. .++..++...+... .. ..+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~----~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG-------KL----NEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cH----HHHHHH
Confidence 34699999999999999999999862 22222 5667653 34555555544211 11 223334
Q ss_pred hccCcEEEEEccccccc---cc-ccccccCCC-CCCCeEEEEeecchhhh-------------------cccCCHHHHHH
Q 038405 253 LRRKKFVLLLDDVWERL---DL-SKTGVSLSD-CQNGSKIVFTTRSEEVC-------------------VECLSPEAALD 308 (863)
Q Consensus 253 l~~k~~LlVlDdv~~~~---~~-~~~~~~l~~-~~~gs~iivTTr~~~v~-------------------l~~L~~~~a~~ 308 (863)
++.+.-+|++||+.... .+ ..+...+.. ...|..||+||....-. +++.+.++-..
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 44455689999997431 11 122222211 12345788888532211 55666777777
Q ss_pred HHhHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 309 LFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 309 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
++.+.+....... -+++...|++.+.|.-
T Consensus 271 IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 271 IARKMLEIEHGEL---PEEVLNFVAENVDDNL 299 (440)
T ss_pred HHHHHHHhcCCCC---CHHHHHHHHhccccCH
Confidence 7777664322211 1566777777776653
No 154
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.51 E-value=0.00033 Score=76.39 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=36.9
Q ss_pred ccccchhhHHHHHHHhhc----c---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIE----D---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++.|.+..+++|.+.+. . ...+-|.++|++|.|||++|+.+++..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 456799988888887662 1 234668899999999999999999876
No 155
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.49 E-value=0.00077 Score=81.07 Aligned_cols=168 Identities=13% Similarity=0.164 Sum_probs=93.2
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccC----CCCEEEE-EEeCCCCCHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNH----CFDLVIF-VAVSKEGNLEKIQEVIR 227 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~w-v~~~~~~~~~~~~~~i~ 227 (863)
++++||+.++.+++..|......-+.++|.+|+||||+|+.++.+.. ... -.+..+| +.++. + .
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~-~~~v~~~l~~~~i~~l~l~~------l----~ 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA-AGDVPPALRNVRLLSLDLGL------L----Q 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh-hCCCCccccCCeEEEeehhh------h----h
Confidence 56899999999999999776666677999999999999999998762 111 1122232 22211 0 0
Q ss_pred HHcCCCcccccccChhhHHHHHHHHhc--cCcEEEEEccccccc---------ccccccccCCCCCCC-eEEEEeecchh
Q 038405 228 KKLDISDYIWNMKGEYDRAVEILISLR--RKKFVLLLDDVWERL---------DLSKTGVSLSDCQNG-SKIVFTTRSEE 295 (863)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~g-s~iivTTr~~~ 295 (863)
.... .....++....+.+.++ +++.+|++|++.... +...+..+. -..| -++|-||...+
T Consensus 256 ---ag~~---~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 256 ---AGAS---VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAE 327 (852)
T ss_pred ---cccc---cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHH
Confidence 0000 01122233333333332 468999999987532 111122222 2233 45555555432
Q ss_pred h--------h---------cccCCHHHHHHHHhHhhCc-cccCCCCChHHHHHHHHHHcCCC
Q 038405 296 V--------C---------VECLSPEAALDLFRYKVGE-DVFNSHPEIPTLAQAVVGECKGL 339 (863)
Q Consensus 296 v--------~---------l~~L~~~~a~~Lf~~~~~~-~~~~~~~~~~~~~~~i~~~c~gl 339 (863)
. | +++++.++..+++...... .....-.-..+....+++.+++.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 2 1 8889999999997544321 00001111255666777776543
No 156
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.0033 Score=72.20 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=94.9
Q ss_pred ccccchhhHHHHHHHhhccCC-ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQS-EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
++++|.+..++.+.+++..+. ...+.++|+.|+||||+|+.++.... ....-+ ..+++.-...+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 568999999999999997755 45577899999999999999876641 111000 011111111222211110
Q ss_pred CCcccccc--cChhhHHHHHHHH-----hccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeec-chhhh----
Q 038405 232 ISDYIWNM--KGEYDRAVEILIS-----LRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTR-SEEVC---- 297 (863)
Q Consensus 232 ~~~~~~~~--~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr-~~~v~---- 297 (863)
......+. ....+....+.+. ..+++-++|+|++... ..+..+...+........+|++|. ...+.
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 00000000 0011112222222 1346678899999754 234444433333233445554443 33222
Q ss_pred -------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHH
Q 038405 298 -------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLAL 343 (863)
Q Consensus 298 -------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 343 (863)
..+++.++..+.+...+...+... ..+....|++.++|.+..+
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i---~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEGIEY---EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 567777777777766554322111 1466778888888876433
No 157
>PRK06620 hypothetical protein; Validated
Probab=97.45 E-value=0.00049 Score=68.55 Aligned_cols=24 Identities=29% Similarity=0.123 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.+.|||++|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 668999999999999999987765
No 158
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00043 Score=64.24 Aligned_cols=89 Identities=21% Similarity=0.062 Sum_probs=49.1
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLR 254 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (863)
..+.|+|++|+||||+|+.++.... .....++++..+........... ........ ...........+.+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998872 22234556554443222211111 00010000 11222333334444444
Q ss_pred cC-cEEEEEcccccccc
Q 038405 255 RK-KFVLLLDDVWERLD 270 (863)
Q Consensus 255 ~k-~~LlVlDdv~~~~~ 270 (863)
.. ..+|++|++.....
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 43 49999999987543
No 159
>PRK10536 hypothetical protein; Provisional
Probab=97.44 E-value=0.0017 Score=65.04 Aligned_cols=137 Identities=14% Similarity=0.137 Sum_probs=75.4
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEe----CC-----CCCHHH--
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAV----SK-----EGNLEK-- 221 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~----~~-----~~~~~~-- 221 (863)
..+.++......++.++.+. .+|.+.|.+|.|||+||.++..+.. ..+.|+.++...- ++ +.+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l-~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEAL-IHKDVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHH-hcCCeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 45668888888899888764 4999999999999999999887531 1234554443321 11 111211
Q ss_pred --HHHHHHHHcCCCcccccccChhhHHH--------HHHHHhccCcE---EEEEcccccccccccccccCCCCCCCeEEE
Q 038405 222 --IQEVIRKKLDISDYIWNMKGEYDRAV--------EILISLRRKKF---VLLLDDVWERLDLSKTGVSLSDCQNGSKIV 288 (863)
Q Consensus 222 --~~~~i~~~l~~~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~~~l~~~~~gs~ii 288 (863)
.++.+...+..-. .....+.... .=..+++|..+ +||+|...+... ..+...+...+.+|+||
T Consensus 132 ~p~~~pi~D~L~~~~---~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v 207 (262)
T PRK10536 132 APYFRPVYDVLVRRL---GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHHh---ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEE
Confidence 1222222221000 0000000000 00235667554 999999987533 22222333456899999
Q ss_pred Eeecchhh
Q 038405 289 FTTRSEEV 296 (863)
Q Consensus 289 vTTr~~~v 296 (863)
+|=-..++
T Consensus 208 ~~GD~~Qi 215 (262)
T PRK10536 208 VNGDITQC 215 (262)
T ss_pred EeCChhhc
Confidence 98765444
No 160
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.42 E-value=0.001 Score=73.97 Aligned_cols=146 Identities=21% Similarity=0.212 Sum_probs=78.1
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL 253 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (863)
...+.|+|..|+|||+|++++++... ....=..++|++. .++...+...+... . ...+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~----~~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRNN-------K----MEEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHcC-------C----HHHHHHHH
Confidence 35689999999999999999999872 1111124566643 33444444443211 1 12233334
Q ss_pred ccCcEEEEEcccccccc---c-ccccccCCC-CCCCeEEEEeecchhhh-------------------cccCCHHHHHHH
Q 038405 254 RRKKFVLLLDDVWERLD---L-SKTGVSLSD-CQNGSKIVFTTRSEEVC-------------------VECLSPEAALDL 309 (863)
Q Consensus 254 ~~k~~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~iivTTr~~~v~-------------------l~~L~~~~a~~L 309 (863)
++ .-+|||||++.... + +.+...+.. ...|..||+||....-. +++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 34788999975321 1 112221211 12355688888653322 445566666666
Q ss_pred HhHhhCccccCCCCChHHHHHHHHHHcCCChH
Q 038405 310 FRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL 341 (863)
Q Consensus 310 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 341 (863)
+...+....... -+++...|++.+.|..-
T Consensus 277 l~~~~~~~~~~l---~~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 277 LQKKAEEEGLEL---PDEVLEFIAKNIRSNVR 305 (405)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhcCCCHH
Confidence 666654322111 14556666666666543
No 161
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=8.6e-05 Score=86.46 Aligned_cols=81 Identities=23% Similarity=0.369 Sum_probs=39.5
Q ss_pred CCCccEEEeeccccccc-chhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccc--hhhhcccCccE
Q 038405 520 CPHLQTLLVRFTVLEIF-PHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELP--SEIMYLKNLKI 596 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l-~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP--~~i~~L~~L~~ 596 (863)
+|.|++|.+.+-.+..- -...+.++++|+.||+|++ +++.+ ..+++|++|+.|.+++-.+..-+ ..+.+|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 55666665555422111 1122445555666666655 55544 44555555555555554444322 23445555555
Q ss_pred EecCCC
Q 038405 597 LLLDGM 602 (863)
Q Consensus 597 L~l~~~ 602 (863)
||+|..
T Consensus 225 LDIS~~ 230 (699)
T KOG3665|consen 225 LDISRD 230 (699)
T ss_pred eecccc
Confidence 555543
No 162
>PRK08116 hypothetical protein; Validated
Probab=97.41 E-value=0.00024 Score=73.46 Aligned_cols=101 Identities=24% Similarity=0.277 Sum_probs=58.8
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLR 254 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (863)
.-+.++|..|+|||.||.++++... .....++|++ ..+++..+........ ..+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSG----KED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccc----ccc----HHHHHHHhc
Confidence 4588999999999999999999872 2234566665 3445555554442211 111 222334454
Q ss_pred cCcEEEEEccccc--cccccc--ccccCCC-CCCCeEEEEeecc
Q 038405 255 RKKFVLLLDDVWE--RLDLSK--TGVSLSD-CQNGSKIVFTTRS 293 (863)
Q Consensus 255 ~k~~LlVlDdv~~--~~~~~~--~~~~l~~-~~~gs~iivTTr~ 293 (863)
+-. ||||||+.. ..+|.. +..-+.. ...|..+||||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 899999943 334432 2211111 2345679999965
No 163
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.38 E-value=0.001 Score=74.86 Aligned_cols=146 Identities=20% Similarity=0.186 Sum_probs=81.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL 253 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (863)
..-+.|+|..|+|||+|++.+++... ....-..++|++. ..+...+...+... . ...+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~----~~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTS------EKFTNDFVNALRNN-------T----MEEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHHcC-------c----HHHHHHHH
Confidence 35689999999999999999999872 1111234556643 23334444433211 1 12233344
Q ss_pred ccCcEEEEEcccccccc---c-ccccccCCC-CCCCeEEEEeecchhhh-------------------cccCCHHHHHHH
Q 038405 254 RRKKFVLLLDDVWERLD---L-SKTGVSLSD-CQNGSKIVFTTRSEEVC-------------------VECLSPEAALDL 309 (863)
Q Consensus 254 ~~k~~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~iivTTr~~~v~-------------------l~~L~~~~a~~L 309 (863)
+ +.-+|||||+..... + +.+...+.. ...|..||+||....-. +++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 344889999964311 1 122221111 12345688888654211 566777777777
Q ss_pred HhHhhCccccCCCCChHHHHHHHHHHcCCChH
Q 038405 310 FRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL 341 (863)
Q Consensus 310 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 341 (863)
+...+....... -+++..-|++.+.|..-
T Consensus 289 l~~~~~~~~~~l---~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 289 LKKKAEEEGIDL---PDEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHcCcCCCHH
Confidence 777664322111 25667777777777654
No 164
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0028 Score=67.45 Aligned_cols=85 Identities=13% Similarity=0.102 Sum_probs=54.1
Q ss_pred cCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecchhhh------------cccCCHHHHHHHHhHhhCccccC
Q 038405 255 RKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEEVC------------VECLSPEAALDLFRYKVGEDVFN 320 (863)
Q Consensus 255 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~v~------------l~~L~~~~a~~Lf~~~~~~~~~~ 320 (863)
+++-++|+|+++.. .....+...+-....++.+|+||.+.... +.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 34445677999864 33344444443334567777777766433 7888999998888765311
Q ss_pred CCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 321 SHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 321 ~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
...+.+..++..++|.|+.+..+
T Consensus 181 ---~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ---SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---CChHHHHHHHHHcCCCHHHHHHH
Confidence 11345667889999999765544
No 165
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0025 Score=71.23 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=64.9
Q ss_pred CccccchhhHHHHHHHhhc------cCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 038405 152 TEKTVGADSKLDEVWGCIE------DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 225 (863)
+++-+|+++-+++|++++. +.+-+++..+|++|+|||++|+.++.-. ...| +-++|+.-.|..+|...
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhhccc
Confidence 3566899999999999883 2456899999999999999999999887 3333 23456665565554211
Q ss_pred HHHHcCCCcccccccChhhHHHHHHHHhc---cCcEEEEEccccc
Q 038405 226 IRKKLDISDYIWNMKGEYDRAVEILISLR---RKKFVLLLDDVWE 267 (863)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~ 267 (863)
=-.. ......++-+.|+ ..+=|+.+|.|+.
T Consensus 484 RRTY------------VGAMPGkiIq~LK~v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 RRTY------------VGAMPGKIIQCLKKVKTENPLILIDEVDK 516 (906)
T ss_pred ceee------------eccCChHHHHHHHhhCCCCceEEeehhhh
Confidence 1111 1112223344443 4567899999975
No 166
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.36 E-value=0.0062 Score=73.27 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=38.0
Q ss_pred ccccchhhHHHHHHHhhcc------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|.++.+++|.+++.. ....++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4577999999999887631 234589999999999999999999886
No 167
>PRK08118 topology modulation protein; Reviewed
Probab=97.33 E-value=0.0001 Score=70.38 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=28.8
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEE
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIF 210 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w 210 (863)
+.|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987322356777776
No 168
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0088 Score=67.37 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=61.9
Q ss_pred ccccchhhHHHHHHHhhc------cCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIE------DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVI 226 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 226 (863)
.+-+|.++-+++|++.|. +-.-+++.+||++|+|||+|++.++.-. ...| +-++++.-.|..+|-..=
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhcccc
Confidence 455799999999999982 1344799999999999999999999887 4444 233444444444332110
Q ss_pred HHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccc
Q 038405 227 RKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWER 268 (863)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 268 (863)
-..+| .=+......++ ..+.++=+++||.++..
T Consensus 397 RTYIG--------amPGrIiQ~mk-ka~~~NPv~LLDEIDKm 429 (782)
T COG0466 397 RTYIG--------AMPGKIIQGMK-KAGVKNPVFLLDEIDKM 429 (782)
T ss_pred ccccc--------cCChHHHHHHH-HhCCcCCeEEeechhhc
Confidence 00111 01111122221 22457779999999753
No 169
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.31 E-value=0.0012 Score=73.84 Aligned_cols=46 Identities=26% Similarity=0.436 Sum_probs=36.8
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++.|.+..++++.+.+.- ...+-+.++|++|.|||++|+.+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 4466899999998887631 223458899999999999999999986
No 170
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.29 E-value=0.00095 Score=80.69 Aligned_cols=46 Identities=17% Similarity=0.365 Sum_probs=40.2
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++||+++++++++.|......-+.++|.+|+|||++|+.++.+.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999977555566799999999999999998876
No 171
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.29 E-value=0.0025 Score=69.96 Aligned_cols=126 Identities=20% Similarity=0.101 Sum_probs=81.3
Q ss_pred hhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc
Q 038405 158 ADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW 237 (863)
Q Consensus 158 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 237 (863)
|...+.++.+.+..... ++.|.|+-++||||+++.+.... ... .+++..-+......-+.+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l~d~----------- 83 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIELLDL----------- 83 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhHHHH-----------
Confidence 44555666666655443 99999999999999997776665 222 5565543331111111111
Q ss_pred cccChhhHHHHHHHHhccCcEEEEEcccccccccccccccCCCCCCCeEEEEeecchhhh----------------cccC
Q 038405 238 NMKGEYDRAVEILISLRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVC----------------VECL 301 (863)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~~v~----------------l~~L 301 (863)
.....+.-..++..|+||.|....+|+.....+.+.++. +|++|+-+.... +-||
T Consensus 84 --------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 84 --------LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred --------HHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 111111111277899999999999999888777776666 888888876654 7788
Q ss_pred CHHHHHHHH
Q 038405 302 SPEAALDLF 310 (863)
Q Consensus 302 ~~~~a~~Lf 310 (863)
+..|-..+-
T Consensus 155 SF~Efl~~~ 163 (398)
T COG1373 155 SFREFLKLK 163 (398)
T ss_pred CHHHHHhhc
Confidence 887776654
No 172
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.29 E-value=0.0021 Score=71.49 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=76.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL 253 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (863)
..-+.|+|..|+|||+|++++++... .....+++++ ...+...+...+... . ...+++.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 35688999999999999999999872 1223455654 234444554444211 1 12233333
Q ss_pred ccCcEEEEEccccccccc----ccccccCCC-CCCCeEEEEeecchhhh-------------------cccCCHHHHHHH
Q 038405 254 RRKKFVLLLDDVWERLDL----SKTGVSLSD-CQNGSKIVFTTRSEEVC-------------------VECLSPEAALDL 309 (863)
Q Consensus 254 ~~k~~LlVlDdv~~~~~~----~~~~~~l~~-~~~gs~iivTTr~~~v~-------------------l~~L~~~~a~~L 309 (863)
+ +.-+|++||+...... +++...+.. ...|..||+||....-. +.+++.++-..+
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 3447888998653221 122222210 12355788888653221 555666777777
Q ss_pred HhHhhCccccCCCCChHHHHHHHHHHcCC
Q 038405 310 FRYKVGEDVFNSHPEIPTLAQAVVGECKG 338 (863)
Q Consensus 310 f~~~~~~~~~~~~~~~~~~~~~i~~~c~g 338 (863)
+.+++....... -+++..-|++.+.|
T Consensus 280 L~~k~~~~~~~l---~~evl~~la~~~~~ 305 (445)
T PRK12422 280 LERKAEALSIRI---EETALDFLIEALSS 305 (445)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhcCC
Confidence 766654322111 13445555555553
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.23 E-value=0.0021 Score=78.03 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=40.3
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++||+.++.+++..|......-+.++|.+|+|||++|+.++.+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999977665667799999999999999998876
No 174
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.20 E-value=0.00044 Score=63.39 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHhhhhhhcc
Q 038405 177 IGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999987
No 175
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0082 Score=63.55 Aligned_cols=186 Identities=15% Similarity=0.089 Sum_probs=100.6
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccc------------cCCCCEEEEEEeCCCCCH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDV------------NHCFDLVIFVAVSKEGNL 219 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~~F~~~~wv~~~~~~~~ 219 (863)
.+++|.+..++.+...+..+.+ ....++|..|+||+++|..+++...-. ...+.-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 3578999999999999988765 789999999999999998877654111 011112233321100000
Q ss_pred HHHHHHHHHHcCCCcccccccChhhHHHHHHHHh-----ccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeec
Q 038405 220 EKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL-----RRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTR 292 (863)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr 292 (863)
..+-..-++..+...........+ .++.+.+.+ .+++-++|+|+++... ....+...+-...+. .+|++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~-~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNG-TLILIAP 161 (314)
T ss_pred cccchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCC-eEEEEEC
Confidence 000001111111100000011111 123344433 3567789999987542 233343333222233 4555554
Q ss_pred chh-hh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 293 SEE-VC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 293 ~~~-v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
+.. +. +.+++.++..+.+........ .......++..++|.|..+...
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 443 22 788999999998887643211 1112468899999999765543
No 176
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.20 E-value=0.00049 Score=80.28 Aligned_cols=123 Identities=18% Similarity=0.191 Sum_probs=71.8
Q ss_pred cccceEEEeccCCccc--cCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc--hhhhcccccc
Q 038405 499 WREDFRLSLWGSSIEY--LPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP--AEMGALINLR 572 (863)
Q Consensus 499 ~~~~~~l~l~~~~~~~--l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp--~~i~~L~~L~ 572 (863)
.+.+++|.+.+-.+.. +.... +|+|++|+++++.++.+.. ++.+++|++|.+.+- .+...+ ..+.+|++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G--IS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG--ISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH--HhccccHHHHhccCC-CCCchhhHHHHhcccCCC
Confidence 3466777776543322 11222 7788888888887776632 677888888887765 443322 2456788888
Q ss_pred eeeccCCCccccchh-------hhcccCccEEecCCCCCccccchhhhcCCCCCceeec
Q 038405 573 CLNLSNTSIEELPSE-------IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSL 624 (863)
Q Consensus 573 ~L~L~~~~i~~lP~~-------i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l 624 (863)
.||+|......-|.- -..|++|++||.+++..-..+-...+..-++|+.+.+
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 888887643333211 1247778888877766433333333334445554443
No 177
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.0015 Score=70.08 Aligned_cols=126 Identities=21% Similarity=0.167 Sum_probs=72.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILIS 252 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (863)
....+.|||..|.|||.|++++.+.. .........+.++ .+......+..+.. .....+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~----se~f~~~~v~a~~~-----------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT----SEDFTNDFVKALRD-----------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc----HHHHHHHHHHHHHh-----------hhHHHHHHh
Confidence 46789999999999999999999987 2333322222222 23333333333321 223444555
Q ss_pred hccCcEEEEEcccccccc---cc-cccccCCC-CCCCeEEEEeecchhhh-------------------cccCCHHHHHH
Q 038405 253 LRRKKFVLLLDDVWERLD---LS-KTGVSLSD-CQNGSKIVFTTRSEEVC-------------------VECLSPEAALD 308 (863)
Q Consensus 253 l~~k~~LlVlDdv~~~~~---~~-~~~~~l~~-~~~gs~iivTTr~~~v~-------------------l~~L~~~~a~~ 308 (863)
. .-=++++||++-... |+ ++...|.. ...|-.||+|++...-. +.+.+.+....
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 4 334888999975322 22 22222221 12344899999765443 66677777777
Q ss_pred HHhHhhCccc
Q 038405 309 LFRYKVGEDV 318 (863)
Q Consensus 309 Lf~~~~~~~~ 318 (863)
.+.+++....
T Consensus 252 iL~kka~~~~ 261 (408)
T COG0593 252 ILRKKAEDRG 261 (408)
T ss_pred HHHHHHHhcC
Confidence 7777654433
No 178
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.17 E-value=0.00059 Score=68.09 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=29.8
Q ss_pred EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEe
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAV 213 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 213 (863)
.++|+|..|+|||||+..+.... .+.|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 47899999999999999998876 678888877754
No 179
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.15 E-value=0.0045 Score=70.58 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=33.7
Q ss_pred ccccchhhHHHHHHHhh---cc---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCI---ED---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++|.+..++++.+.+ .. ...+-+.++|++|+|||++|+.+++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 45778887766665544 21 123348899999999999999999876
No 180
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.13 E-value=0.0035 Score=71.06 Aligned_cols=144 Identities=16% Similarity=0.138 Sum_probs=80.0
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLR 254 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (863)
..+.|+|..|+|||.|++++++... ....-..++|++. .++..++...+.. .. ...+++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 4589999999999999999999862 1111234566643 3444444433321 11 122333333
Q ss_pred cCcEEEEEccccccc---ccc-cccccCCC-CCCCeEEEEeecchhhh-------------------cccCCHHHHHHHH
Q 038405 255 RKKFVLLLDDVWERL---DLS-KTGVSLSD-CQNGSKIVFTTRSEEVC-------------------VECLSPEAALDLF 310 (863)
Q Consensus 255 ~k~~LlVlDdv~~~~---~~~-~~~~~l~~-~~~gs~iivTTr~~~v~-------------------l~~L~~~~a~~Lf 310 (863)
+ -=+|||||+.... .|. .+...+.. ...|..|||||+...-. ++..+.+.-..++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 3478899997531 222 22222211 13356788888864221 5666777777777
Q ss_pred hHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 311 RYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
.+++.......+ +++.+-|++.+.+..
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnv 482 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCH
Confidence 777644332221 556666666665543
No 181
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.13 E-value=0.0061 Score=72.58 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=39.2
Q ss_pred ccccchhhHHHHHHHhhcc------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+.+|.++.+++|.++|.. ....++.++|++|+||||+|+.++...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999988842 345689999999999999999999765
No 182
>PRK07261 topology modulation protein; Provisional
Probab=97.09 E-value=0.0015 Score=62.74 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=42.0
Q ss_pred EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRR 255 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 255 (863)
.|.|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48999999999999999998765111123444544211 1122344555566666666
Q ss_pred CcEEEEEcccccc
Q 038405 256 KKFVLLLDDVWER 268 (863)
Q Consensus 256 k~~LlVlDdv~~~ 268 (863)
.+ .|+|+....
T Consensus 59 ~~--wIidg~~~~ 69 (171)
T PRK07261 59 HD--WIIDGNYSW 69 (171)
T ss_pred CC--EEEcCcchh
Confidence 66 577887543
No 183
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.08 E-value=0.0016 Score=78.68 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=40.7
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++||+.++.++++.|......-+.++|.+|+|||++|+.++.+.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999977666667799999999999999999876
No 184
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.07 E-value=0.0017 Score=76.50 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=39.5
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++||++++.++++.|......-+.++|.+|+|||++|+.++...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999976544556789999999999999998765
No 185
>CHL00176 ftsH cell division protein; Validated
Probab=97.04 E-value=0.0047 Score=71.53 Aligned_cols=160 Identities=13% Similarity=0.164 Sum_probs=84.6
Q ss_pred ccccchhhHHHHHHHh---hccC---------CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKLDEVWGC---IEDQ---------SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~---L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
.+++|.++.++++.+. +... ..+-|.++|++|+|||+||+.++... ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 4577887766665544 3321 13458999999999999999998875 222 2332211
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc------------c----cccccccCC--CCC
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL------------D----LSKTGVSLS--DCQ 282 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~--~~~ 282 (863)
++. ... ...........+.......+++|++||++... . +..+...+. ...
T Consensus 251 ~f~----~~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFV----EMF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHH----HHh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111 000 00111122223334445678999999996421 1 111211111 123
Q ss_pred CCeEEEEeecchhhh---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCC
Q 038405 283 NGSKIVFTTRSEEVC---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGL 339 (863)
Q Consensus 283 ~gs~iivTTr~~~v~---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 339 (863)
.+-.||.||...... +...+.++-.++++.++..... ........+++.+.|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCCC
Confidence 455666677654332 4455667777777766643221 1123456677777763
No 186
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.02 E-value=0.00075 Score=63.66 Aligned_cols=105 Identities=24% Similarity=0.263 Sum_probs=67.3
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhh-cccccceeeccCCCccccch--hhhcccCccE
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMG-ALINLRCLNLSNTSIEELPS--EIMYLKNLKI 596 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~-~L~~L~~L~L~~~~i~~lP~--~i~~L~~L~~ 596 (863)
..+...+++.+|.+..++. |..++.|.+|.|++| .|..+-..+. -+++|..|.|.+|+|.++.+ .+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 4455667777776666554 667777777777777 5655544444 35567777787777776632 2556777888
Q ss_pred EecCCCCCccc--cchhhhcCCCCCceeeccCc
Q 038405 597 LLLDGMRHFHL--IPARVFSSLLSLKVFSLFST 627 (863)
Q Consensus 597 L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~ 627 (863)
|.+-+|..... .-.-++.++++|++|++.+.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 87777652111 11224677888888888763
No 187
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.02 E-value=0.0016 Score=74.71 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=39.4
Q ss_pred ccccchhhHHHHHHHhhcc-----CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED-----QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++|-++.++++..++.. ...+++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999865 234679999999999999999998765
No 188
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.02 E-value=0.00085 Score=63.31 Aligned_cols=101 Identities=21% Similarity=0.252 Sum_probs=83.5
Q ss_pred cceEEEeccCCccccCCCC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch--hhhcccccceeecc
Q 038405 501 EDFRLSLWGSSIEYLPETP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA--EMGALINLRCLNLS 577 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~--~i~~L~~L~~L~L~ 577 (863)
....+.+.+|.+..++..+ ++.|.+|.+.+|.+..+.+..-..+++|..|.|.+| .+..+-+ -+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 3446788889998888888 999999999999999998886677889999999999 7766533 25578899999999
Q ss_pred CCCccccch----hhhcccCccEEecCCC
Q 038405 578 NTSIEELPS----EIMYLKNLKILLLDGM 602 (863)
Q Consensus 578 ~~~i~~lP~----~i~~L~~L~~L~l~~~ 602 (863)
+|.+...+. .+.++++|++||..+-
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 998876543 3778999999999763
No 189
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.013 Score=60.63 Aligned_cols=184 Identities=16% Similarity=0.229 Sum_probs=104.3
Q ss_pred cchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHH
Q 038405 156 VGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKI 222 (863)
Q Consensus 156 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 222 (863)
=|.++.+++|.+...- +..+=|.+||++|.|||-||++|+++- ...| +.|..+ +
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS----E- 220 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS----E- 220 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----H-
Confidence 3789999999887732 234557899999999999999999986 3433 443322 1
Q ss_pred HHHHHHHcCCCcccccccChhhHHHHHHHHhc-cCcEEEEEccccccc----------------ccccccccCCC--CCC
Q 038405 223 QEVIRKKLDISDYIWNMKGEYDRAVEILISLR-RKKFVLLLDDVWERL----------------DLSKTGVSLSD--CQN 283 (863)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------------~~~~~~~~l~~--~~~ 283 (863)
+.+..-+ +-..+...+.+.-+ ..+..|.+|.++... .+-++...+.. ...
T Consensus 221 ---lVqKYiG--------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 221 ---LVQKYIG--------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ---HHHHHhc--------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 1111111 11223334443333 468899999986410 01122222221 233
Q ss_pred CeEEEEeecchhhh--------------cccCCHHHHH-HHHhHhhCccccCCCCChHHHHHHHHHHcCCCh----HHHH
Q 038405 284 GSKIVFTTRSEEVC--------------VECLSPEAAL-DLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP----LALI 344 (863)
Q Consensus 284 gs~iivTTr~~~v~--------------l~~L~~~~a~-~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP----Lai~ 344 (863)
.-|||..|...++. --+++..++. +.|+-++..-....+-++ +.+++.|.|.- -|+.
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAIC 365 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHH
Confidence 56889888777665 2235666664 577766654443333333 45666666654 4566
Q ss_pred HHHHHHhCC--C---ChhhHHHHHHHHh
Q 038405 345 TIARAMSSR--R---SPREWQYVIDELQ 367 (863)
Q Consensus 345 ~~~~~l~~~--~---~~~~w~~~~~~l~ 367 (863)
+=|++++-+ + +.+.+..+.++.-
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 666666432 2 3455555555443
No 190
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.02 Score=60.48 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=88.1
Q ss_pred hhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccCCCCE-----EEEEEeCCCCCHHHHHHHHHHHcCC
Q 038405 159 DSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDL-----VIFVAVSKEGNLEKIQEVIRKKLDI 232 (863)
Q Consensus 159 ~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-----~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (863)
+...+.+...+..+.+. .+.+.|+.|+||+++|..++....- .....+ +-|+..+..+|+..+. ..
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~ 81 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQLVS-------FI 81 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEEEe-------cC
Confidence 34556677777666544 5889999999999999888765411 110000 0000000000100000 00
Q ss_pred Cccccc---ccChhhHHHHHHHHh-----ccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchhhh-----
Q 038405 233 SDYIWN---MKGEYDRAVEILISL-----RRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEEVC----- 297 (863)
Q Consensus 233 ~~~~~~---~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~v~----- 297 (863)
+..... ..-..+.+..+.+.+ .+++-++|+|+++... .-..+...+-....++.+|++|.+..-.
T Consensus 82 p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr 161 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR 161 (319)
T ss_pred CCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH
Confidence 000000 000011122222322 2466789999998642 2233333333334466777777654432
Q ss_pred -------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 298 -------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 298 -------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
+.+++.+++.+.+... +. + ...+..++..++|.|+.+..+
T Consensus 162 SRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 162 SRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHH
Confidence 6778888888777643 11 1 334677899999999866543
No 191
>PRK08181 transposase; Validated
Probab=96.95 E-value=0.0009 Score=68.75 Aligned_cols=105 Identities=17% Similarity=0.082 Sum_probs=56.8
Q ss_pred HhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHH
Q 038405 167 GCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRA 246 (863)
Q Consensus 167 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 246 (863)
+|+.. ..-+.++|.+|+|||.||..+.+... .....+.|++ ..++...+..... ..+...
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~-- 160 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLES-- 160 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHH--
Confidence 45542 34589999999999999999998762 2223456664 3455555543321 111122
Q ss_pred HHHHHHhccCcEEEEEcccccc--ccc--ccccccCCCCCCCeEEEEeecch
Q 038405 247 VEILISLRRKKFVLLLDDVWER--LDL--SKTGVSLSDCQNGSKIVFTTRSE 294 (863)
Q Consensus 247 ~~l~~~l~~k~~LlVlDdv~~~--~~~--~~~~~~l~~~~~gs~iivTTr~~ 294 (863)
+.+.+. +.=||||||+... ..+ ..+...+.....+..+||||...
T Consensus 161 --~l~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 161 --AIAKLD-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred --HHHHHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 222222 3459999999532 111 11222222111123588888753
No 192
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.89 E-value=0.0062 Score=57.82 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=67.8
Q ss_pred chhhHHHHHHHhhccCCce-EEEEEcCCCChHHHHhhhhhhccccccC-----------------CCCEEEEEEeCCC--
Q 038405 157 GADSKLDEVWGCIEDQSEQ-TIGLYGMGGVGKITLLKKPNNKFLDVNH-----------------CFDLVIFVAVSKE-- 216 (863)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~F~~~~wv~~~~~-- 216 (863)
|-++..+.+.+.+..+... .+.++|..|+||+|+|..+++...-... ...-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5566777788888776654 6899999999999999988765421111 1112223322221
Q ss_pred -CCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecc
Q 038405 217 -GNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRS 293 (863)
Q Consensus 217 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~ 293 (863)
..++++. ++.+.+.... ..+++=.+|+||++.. .....+...+-....++++|++|++
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 2222222 3333322221 1245678999999864 3444554444445578899998887
Q ss_pred hh
Q 038405 294 EE 295 (863)
Q Consensus 294 ~~ 295 (863)
..
T Consensus 142 ~~ 143 (162)
T PF13177_consen 142 PS 143 (162)
T ss_dssp GG
T ss_pred hH
Confidence 65
No 193
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.89 E-value=0.005 Score=65.39 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=66.0
Q ss_pred HHHHHHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCE-EEEEEeCCC-CCHHHHHHHHHHHcCCCcccc
Q 038405 161 KLDEVWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDL-VIFVAVSKE-GNLEKIQEVIRKKLDISDYIW 237 (863)
Q Consensus 161 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~ 237 (863)
...++++.+.. ..-.-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+. ..+.++.+.+...+.......
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 44557777754 3335579999999999999999988762 223344 467666654 467888888877665432100
Q ss_pred cc---cChhhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 238 NM---KGEYDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 238 ~~---~~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
.. ......+..+.+++ ++++++||+|++-.
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 00 01111222333443 47999999999864
No 194
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.00015 Score=71.48 Aligned_cols=100 Identities=26% Similarity=0.266 Sum_probs=75.4
Q ss_pred CCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccch--hhhcccCccEEe
Q 038405 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPS--EIMYLKNLKILL 598 (863)
Q Consensus 521 ~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~--~i~~L~~L~~L~ 598 (863)
.+++.|+++||.+..+. ++.+|+.|+||.||-| .|+.+-. +..+++|+.|.|+.|.|..+-+ -+.++++|+.|-
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 45667777788777664 3788999999999998 7777754 7888999999999998887743 367889999998
Q ss_pred cCCCCCccccch----hhhcCCCCCceeec
Q 038405 599 LDGMRHFHLIPA----RVFSSLLSLKVFSL 624 (863)
Q Consensus 599 l~~~~~l~~lp~----~~i~~L~~L~~L~l 624 (863)
|..|.....-+. .++.-|++|+.|+=
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccC
Confidence 888875544333 34566788887763
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.019 Score=61.51 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=35.4
Q ss_pred cccc-hhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVG-ADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vG-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++| -+..++.+.+.+..+.+ ....++|+.|+||||+|+.+.+..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3566 67777888888876654 456899999999999999887664
No 196
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.81 E-value=0.063 Score=65.17 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=37.1
Q ss_pred ccccchhhHHHHHHHhhcc-------C--CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED-------Q--SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999998888887742 1 13478899999999999999998765
No 197
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.041 Score=63.95 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=62.2
Q ss_pred cccchhhHHHHHHHhhcc---------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHH
Q 038405 154 KTVGADSKLDEVWGCIED---------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQE 224 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 224 (863)
.++|-+..++.+.+.+.. ....+....|+.|||||-||+.++...- +.=+..+-+..|+- .-.+
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~DMSEy----~EkH 564 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRIDMSEY----MEKH 564 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceeechHHH----HHHH
Confidence 468999999999888832 2356778899999999999999887651 11123333333221 1122
Q ss_pred HHHHHcCCCcccccccChhhHHHHHHHHhccCcE-EEEEcccccc
Q 038405 225 VIRKKLDISDYIWNMKGEYDRAVEILISLRRKKF-VLLLDDVWER 268 (863)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 268 (863)
.+.+-+|.+.. +...+. -..+-+.++.++| +|.||+|...
T Consensus 565 sVSrLIGaPPG-YVGyee---GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 565 SVSRLIGAPPG-YVGYEE---GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHhCCCCC-Cceecc---ccchhHhhhcCCCeEEEechhhhc
Confidence 33333444321 111111 2345566778877 7778999753
No 198
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.76 E-value=0.018 Score=61.20 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=28.5
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEe
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAV 213 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 213 (863)
.-+.++|..|+|||+||.++++... ..-..++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH
Confidence 6799999999999999999999872 22235677754
No 199
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.74 E-value=0.0015 Score=69.09 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=39.9
Q ss_pred cccchhhHHHHHHHhhcc------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCIED------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+++|.++.++++++++.. ...++++++|++|+||||||+.+++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999954 346889999999999999999999877
No 200
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.72 E-value=0.0096 Score=62.57 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+.++|||++|.|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999999987
No 201
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.02 Score=63.04 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=58.2
Q ss_pred cccchhhHHHHHHHhhcc------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHH
Q 038405 154 KTVGADSKLDEVWGCIED------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEK 221 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~ 221 (863)
++=|.+..+.++.+++.. ...+=|.++|++|.|||.||+++++.. .- -|+.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~v-----Pf~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GV-----PFLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CC-----ceEeecch-----
Confidence 455899988888877732 223457899999999999999999987 22 23444433
Q ss_pred HHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccc
Q 038405 222 IQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWE 267 (863)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 267 (863)
+|+.... ..+++.....+.+.-..-++++++|+++-
T Consensus 258 ---eivSGvS-------GESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVS-------GESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccC-------cccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 2322222 22223333333334456899999999974
No 202
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.05 Score=57.56 Aligned_cols=165 Identities=9% Similarity=0.054 Sum_probs=87.1
Q ss_pred HHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc---
Q 038405 161 KLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI--- 236 (863)
Q Consensus 161 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 236 (863)
..+.+.+.+..+.+ ..+.+.|+.|+||+++|+.++....- ..... ...++.=..-+.+... ..++-.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC-~~~~~-------~~~Cg~C~sC~~~~~g-~HPD~~~i~ 80 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC-QTPQG-------DQPCGQCHSCHLFQAG-NHPDFHILE 80 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC-CCCCC-------CCCCCCCHHHHHHhcC-CCCCEEEEc
Confidence 44566666666553 57789999999999999988865411 01000 0000000111111100 000000
Q ss_pred c---cccChhhHHHHHHHHh-----ccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchhhh---------
Q 038405 237 W---NMKGEYDRAVEILISL-----RRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEEVC--------- 297 (863)
Q Consensus 237 ~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~v~--------- 297 (863)
+ .....+ .+..+.+.+ .+++-.+|+|+++... ....+...+-....++.+|++|.+..-.
T Consensus 81 p~~~~~I~id-~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 81 PIDNKDIGVD-QVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred cccCCCCCHH-HHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 0 001111 122233332 2566788899998643 3334444443344566777777655322
Q ss_pred ---cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHH
Q 038405 298 ---VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLAL 343 (863)
Q Consensus 298 ---l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 343 (863)
+.+++.++..+.+....... ...+...+..++|.|+.+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 78889999988887653211 223567788999999644
No 203
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.68 E-value=0.0058 Score=62.35 Aligned_cols=92 Identities=16% Similarity=0.278 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCC-CEEEEEEeCCCCC-HHHHHHHHHHHcCCCcccc----cccCh----
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF-DLVIFVAVSKEGN-LEKIQEVIRKKLDISDYIW----NMKGE---- 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~----~~~~~---- 242 (863)
.-+-++|+|..|+||||||+.+++.. +.+| +.++++-+++... +.++.+.+.+.-....... .....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34568999999999999999999987 3344 5667777766543 4556666554321111000 01111
Q ss_pred --hhHHHHHHHHh--c-cCcEEEEEccccc
Q 038405 243 --YDRAVEILISL--R-RKKFVLLLDDVWE 267 (863)
Q Consensus 243 --~~~~~~l~~~l--~-~k~~LlVlDdv~~ 267 (863)
...+..+.+++ + ++.+|+++||+-.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 11233455666 3 8999999999854
No 204
>PRK09183 transposase/IS protein; Provisional
Probab=96.68 E-value=0.0024 Score=65.69 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+.|+|++|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999998765
No 205
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.67 E-value=0.0012 Score=59.58 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|+|.|++|+||||+|+.++.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 206
>PRK06526 transposase; Provisional
Probab=96.66 E-value=0.0014 Score=66.96 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-+.|+|++|+|||+||..+.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 3568999999999999999998876
No 207
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.66 E-value=0.0086 Score=59.88 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQE 224 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 224 (863)
.-+++.|+|.+|+|||++|.+++... ......++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 35789999999999999999988765 23356889999875 66655544
No 208
>PRK06921 hypothetical protein; Provisional
Probab=96.66 E-value=0.0019 Score=66.64 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEe
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAV 213 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 213 (863)
...-+.++|..|+|||+||.++++... ...-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456799999999999999999999872 221345677764
No 209
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.64 E-value=0.015 Score=59.02 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCC------CEEEEEEeCCCCCHHHHHHHHHHHcCCCc-------ccccc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF------DLVIFVAVSKEGNLEKIQEVIRKKLDISD-------YIWNM 239 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~ 239 (863)
.-.++.|+|.+|+|||+||.+++... ...- ..++|++....++...+.+ +.+..+... .....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeC
Confidence 45799999999999999999987664 1222 5678999887777655543 333322110 00122
Q ss_pred cChhhHHHHHHHHhc----cCcEEEEEccccc
Q 038405 240 KGEYDRAVEILISLR----RKKFVLLLDDVWE 267 (863)
Q Consensus 240 ~~~~~~~~~l~~~l~----~k~~LlVlDdv~~ 267 (863)
.+.++....+.+..+ .+.-|+|+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 344555555544432 3455899999853
No 210
>PRK10867 signal recognition particle protein; Provisional
Probab=96.64 E-value=0.036 Score=60.97 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH--HHHHHHHHHcCCCcccc-cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE--KIQEVIRKKLDISDYIW-NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 249 (863)
...+|.++|.+|+||||.|..++.... .. .-..++.|+.. .+... +-++...+..+.+.... ...++.+.+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~-~~-~G~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK-KK-KKKKVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-Hh-cCCcEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 357999999999999998888877662 11 11234444433 33332 23444566666543211 123444555444
Q ss_pred HHHhccCcE-EEEEcccc
Q 038405 250 LISLRRKKF-VLLLDDVW 266 (863)
Q Consensus 250 ~~~l~~k~~-LlVlDdv~ 266 (863)
.+..+.+.| ++|+|-.-
T Consensus 176 ~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 444444444 66667653
No 211
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.63 E-value=0.07 Score=52.90 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=97.3
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeC-CCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHH
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVS-KEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEIL 250 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (863)
++.+++.++|.-|.|||++++.+.... . . +.++-+.+. +......+...|...+..+.......-.++....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~---~-d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N---E-DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C---C-CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 456799999999999999999554443 1 1 112223333 345677788888888776321101112233334444
Q ss_pred HHh-ccCc-EEEEEcccccc--ccccccccc--CC-CCCCCeEEEEeec----c----hh-----------hhcccCCHH
Q 038405 251 ISL-RRKK-FVLLLDDVWER--LDLSKTGVS--LS-DCQNGSKIVFTTR----S----EE-----------VCVECLSPE 304 (863)
Q Consensus 251 ~~l-~~k~-~LlVlDdv~~~--~~~~~~~~~--l~-~~~~gs~iivTTr----~----~~-----------v~l~~L~~~ 304 (863)
+.. +++| ..+++||.... ..++.++.. +- +...--+|+..-. . .. +.+.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 433 4677 89999998653 222222111 11 1111111222111 0 00 117899999
Q ss_pred HHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHH
Q 038405 305 AALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIAR 348 (863)
Q Consensus 305 ~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 348 (863)
+...++.........+.+--..+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 88888877765443222223356778899999999999887654
No 212
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.069 Score=59.43 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=46.8
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH--HHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL--EKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
..+|+|+|.+|+||||++..++.... ..+....+..++.. .+.. .+.+....+.++.... ...+...+...+ +
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL-~ 424 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL-E 424 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecc-cccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH-H
Confidence 47899999999999999998887652 12222345555543 2222 2223333333443321 122333333333 3
Q ss_pred HhccCcEEEEEcccc
Q 038405 252 SLRRKKFVLLLDDVW 266 (863)
Q Consensus 252 ~l~~k~~LlVlDdv~ 266 (863)
.+.+ .=+|++|..-
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 3333 4578888864
No 213
>PRK12377 putative replication protein; Provisional
Probab=96.61 E-value=0.0076 Score=61.17 Aligned_cols=75 Identities=24% Similarity=0.224 Sum_probs=46.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILIS 252 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (863)
....+.++|.+|+|||+||.++++... .....++++++. ++...+...... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHH
Confidence 346789999999999999999999872 233345676543 444444433311 11111 22222
Q ss_pred hccCcEEEEEccccc
Q 038405 253 LRRKKFVLLLDDVWE 267 (863)
Q Consensus 253 l~~k~~LlVlDdv~~ 267 (863)
+ .+-=||||||+..
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 3 3566899999943
No 214
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.60 E-value=0.0058 Score=59.90 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=52.5
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCccccc-ccChhhHHHHHHHH
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIWN-MKGEYDRAVEILIS 252 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~l~~~ 252 (863)
+||.++|+.|+||||.+.+++.... . . -..+..++..... ...+-++..++.++.+..... ..++.+......+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~-~-~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLK-L-K-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH-H-T-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHh-h-c-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 6899999999999988888877762 2 2 3456777754332 344557778888887643211 22344444444444
Q ss_pred hccCc-EEEEEccc
Q 038405 253 LRRKK-FVLLLDDV 265 (863)
Q Consensus 253 l~~k~-~LlVlDdv 265 (863)
.+.++ =++++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44443 36666755
No 215
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.60 E-value=0.00092 Score=64.48 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=42.8
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL 253 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (863)
..-+.++|..|+|||.||..+.+... ... ..+.|+. ..+++..+-.. . ....... +.+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~--~~g-~~v~f~~------~~~L~~~l~~~----~---~~~~~~~----~~~~l 106 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI--RKG-YSVLFIT------ASDLLDELKQS----R---SDGSYEE----LLKRL 106 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCC----H---CCTTHCH----HHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc--cCC-cceeEee------cCceecccccc----c---cccchhh----hcCcc
Confidence 35699999999999999999998763 222 2456665 34555555321 1 1112222 22334
Q ss_pred ccCcEEEEEccccc
Q 038405 254 RRKKFVLLLDDVWE 267 (863)
Q Consensus 254 ~~k~~LlVlDdv~~ 267 (863)
. +-=||||||+-.
T Consensus 107 ~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 107 K-RVDLLILDDLGY 119 (178)
T ss_dssp H-TSSCEEEETCTS
T ss_pred c-cccEecccccce
Confidence 3 345778999864
No 216
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.60 E-value=0.025 Score=55.17 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=69.1
Q ss_pred CCccccchhhHHHHHHH----hhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 038405 151 ATEKTVGADSKLDEVWG----CIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVI 226 (863)
Q Consensus 151 ~~~~~vGr~~~~~~l~~----~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 226 (863)
.-..++|.|...+.+++ ++..-.---|.+||.-|.|||+|++++.+.+ .+..-. -|.|++.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~---~~~glr--LVEV~k~---------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY---ADEGLR--LVEVDKE---------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH---HhcCCe--EEEEcHH----------
Confidence 33567898887777665 3333344558899999999999999999987 333322 3333322
Q ss_pred HHHcCCCcccccccChhhHHHHHHHHhc--cCcEEEEEcccccc---cccccccccCC---CCCCCeEEEEeecchhhh
Q 038405 227 RKKLDISDYIWNMKGEYDRAVEILISLR--RKKFVLLLDDVWER---LDLSKTGVSLS---DCQNGSKIVFTTRSEEVC 297 (863)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~---~~~~~~~~~l~---~~~~gs~iivTTr~~~v~ 297 (863)
+.. ....|.+.|+ .+||.|..||..=+ .....+...+. ...+.-.++..|.++...
T Consensus 123 --------------dl~-~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHL 186 (287)
T COG2607 123 --------------DLA-TLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHL 186 (287)
T ss_pred --------------HHh-hHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCccc
Confidence 111 1122333343 57999999998532 23333443332 223444666677766655
No 217
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.59 E-value=0.0012 Score=65.07 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=25.1
Q ss_pred hhcccCccEEecCCCCCccccch---hhhcCCCCCceeeccCcch
Q 038405 588 IMYLKNLKILLLDGMRHFHLIPA---RVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 588 i~~L~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~~~~~ 629 (863)
+-+|++|+..+|++|.+-...|+ ..|++-+.|.+|.+.+|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 34566677777776665444443 2355666777777766653
No 218
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.57 E-value=0.0038 Score=60.92 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=62.0
Q ss_pred chhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC--CC----HHHH-------H
Q 038405 157 GADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE--GN----LEKI-------Q 223 (863)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~--~~----~~~~-------~ 223 (863)
.+..+-...++.|. ...++.+.|++|.|||.||.+.+-+. -..+.|+.++++.-.-+ .+ ...+ .
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34455556666666 45699999999999999999988766 34588888888752211 11 1111 1
Q ss_pred HHHHHHcCCCcccccccChhhHHHH------HHHHhccC---cEEEEEcccccc--cccccccccCCCCCCCeEEEEeec
Q 038405 224 EVIRKKLDISDYIWNMKGEYDRAVE------ILISLRRK---KFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTR 292 (863)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr 292 (863)
..+...+..-. .....+..... -..+++|+ ...||+|++.+. .++..+. ...+.|||||++=-
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~il---TR~g~~skii~~GD 154 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMIL---TRIGEGSKIIITGD 154 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHH---TTB-TT-EEEEEE-
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHH---cccCCCcEEEEecC
Confidence 11222221100 00111111100 01234553 569999999875 3454443 34578999999876
Q ss_pred chhh
Q 038405 293 SEEV 296 (863)
Q Consensus 293 ~~~v 296 (863)
..++
T Consensus 155 ~~Q~ 158 (205)
T PF02562_consen 155 PSQI 158 (205)
T ss_dssp ----
T ss_pred ceee
Confidence 5444
No 219
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.56 E-value=0.00096 Score=65.82 Aligned_cols=105 Identities=31% Similarity=0.255 Sum_probs=66.3
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCC--cCccccchhhhcccccceeeccCCCccccc--hhhhcccCcc
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYN--LDLTQLPAEMGALINLRCLNLSNTSIEELP--SEIMYLKNLK 595 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~--~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP--~~i~~L~~L~ 595 (863)
+..|..|.+.++.+..+.. |..|++|++|+++.| .....++.....+++|++|++++|+|+.+- ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3445555555554444333 456778888888887 444455555566688888888888776421 1256677788
Q ss_pred EEecCCCCCcccc--chhhhcCCCCCceeeccC
Q 038405 596 ILLLDGMRHFHLI--PARVFSSLLSLKVFSLFS 626 (863)
Q Consensus 596 ~L~l~~~~~l~~l--p~~~i~~L~~L~~L~l~~ 626 (863)
.|++.+|...... -..+|.-|++|.+|+-..
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 8888888643311 234466778888887654
No 220
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.54 E-value=0.061 Score=60.63 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=84.0
Q ss_pred ccchhhHHHHHHHhhcc-----CCceEEEEEcCCCChHHHHhhhhhhcccc-----ccCCCCEEEEEEeCCCCCHHHHHH
Q 038405 155 TVGADSKLDEVWGCIED-----QSEQTIGLYGMGGVGKITLLKKPNNKFLD-----VNHCFDLVIFVAVSKEGNLEKIQE 224 (863)
Q Consensus 155 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~~F~~~~wv~~~~~~~~~~~~~ 224 (863)
+-+|+.+..+|.+.+.. ...+.+.|.|.+|.|||..+..|.+.... .-..|+. +.|..-.-....++..
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHHH
Confidence 44899999999988843 33458999999999999999999885421 1234533 4455555567899999
Q ss_pred HHHHHcCCCcccccccChhhHHHHHHHHhc-----cCcEEEEEcccccccc-cccc-cccCC-CCCCCeEEEEee
Q 038405 225 VIRKKLDISDYIWNMKGEYDRAVEILISLR-----RKKFVLLLDDVWERLD-LSKT-GVSLS-DCQNGSKIVFTT 291 (863)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~-~~~~-~~~l~-~~~~gs~iivTT 291 (863)
.|.+++..... ........+..+.. .+..++++|+++.... -+++ -..|. ...++||++|.+
T Consensus 477 ~I~~~lsg~~~-----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 477 KIWEALSGERV-----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHhcccCcc-----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 99999976542 23333444444443 4678888998864311 1111 11222 245678876654
No 221
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.53 E-value=0.0061 Score=61.76 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH----cCCCcccccccChhh---H
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK----LDISDYIWNMKGEYD---R 245 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~~---~ 245 (863)
.-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++.+.+.+ +... +..........+..+ .
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFKQ-IAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHHH-HHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 357999999999999999999987762 234678999887 566555432 2222 000000001122222 2
Q ss_pred HHHHHHHhccCcEEEEEcccc
Q 038405 246 AVEILISLRRKKFVLLLDDVW 266 (863)
Q Consensus 246 ~~~l~~~l~~k~~LlVlDdv~ 266 (863)
...+...++.+.-++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 233334444566788888874
No 222
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.48 E-value=0.0046 Score=59.54 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=48.8
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCC-CEEEEEEeCCCCCH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF-DLVIFVAVSKEGNL 219 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~~~ 219 (863)
.++||-++.++++.-.-.+.+.+-+.|.||+|+||||-+..+++... ...+ +.+.-...|++..+
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL--G~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL--GDSYKEAVLELNASDERGI 92 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh--ChhhhhHhhhccCcccccc
Confidence 56899999999998888888999999999999999998888887762 2222 34444444544433
No 223
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.47 E-value=0.1 Score=57.59 Aligned_cols=89 Identities=25% Similarity=0.197 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC--HHHHHHHHHHHcCCCcccc-cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN--LEKIQEVIRKKLDISDYIW-NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 249 (863)
...+|.++|.+|+||||.|..++.... . ..+ .++.|+.. .+. ..+.++.+.+.++.+.... ...+....+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~-~g~-kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~a 169 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-K-KGL-KVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEG 169 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-H-cCC-eEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 357899999999999999999988772 2 222 44445443 222 2445666777777654211 112333333333
Q ss_pred HHHhccCcEEEEEcccc
Q 038405 250 LISLRRKKFVLLLDDVW 266 (863)
Q Consensus 250 ~~~l~~k~~LlVlDdv~ 266 (863)
.+.+++. =+||+|..-
T Consensus 170 l~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 170 LEKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHHhhcC-CEEEEECCC
Confidence 3444444 568888763
No 224
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.046 Score=59.24 Aligned_cols=135 Identities=21% Similarity=0.181 Sum_probs=77.0
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
.....+.+.|++|+|||+||..++.. ..|..+--++..+- ...++......+..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~m---------------------iG~sEsaKc~~i~k 589 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDM---------------------IGLSESAKCAHIKK 589 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHc---------------------cCccHHHHHHHHHH
Confidence 34566889999999999999999865 45655443321111 12233344444444
Q ss_pred ----HhccCcEEEEEccccccccccccccc---------------CCCCCCCeEEEEeecchhhh--------------c
Q 038405 252 ----SLRRKKFVLLLDDVWERLDLSKTGVS---------------LSDCQNGSKIVFTTRSEEVC--------------V 298 (863)
Q Consensus 252 ----~l~~k~~LlVlDdv~~~~~~~~~~~~---------------l~~~~~gs~iivTTr~~~v~--------------l 298 (863)
..+..--.||+||+....+|-.++.. .|..++.--|+-||..+.|. +
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 34556779999999887776655432 12223333344566666665 3
Q ss_pred ccCCH-HHHHHHHhHhhCccccCCCCChHHHHHHHHHHc
Q 038405 299 ECLSP-EAALDLFRYKVGEDVFNSHPEIPTLAQAVVGEC 336 (863)
Q Consensus 299 ~~L~~-~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 336 (863)
..++. ++..+.++..- .-.+.+.+.++++.+.+|
T Consensus 670 pnl~~~~~~~~vl~~~n----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEELN----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CccCchHHHHHHHHHcc----CCCcchhHHHHHHHhccc
Confidence 44443 55555555432 012234456666666666
No 225
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.46 E-value=0.021 Score=59.12 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=36.1
Q ss_pred hhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHH
Q 038405 159 DSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQ 223 (863)
Q Consensus 159 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 223 (863)
...++++..++..+ +-|.+.|.+|+|||++|+.++... ... ...++.....+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CCC---EEEEeCCccCCHHHHh
Confidence 34445555555443 356689999999999999998754 222 3455555555544443
No 226
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.44 E-value=0.077 Score=56.01 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=86.5
Q ss_pred hHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhcccccc------------------CCCCEEEEEEeCCCCCHH
Q 038405 160 SKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVN------------------HCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 160 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~~~~~~~~ 220 (863)
...+++.+.+..+.+ ..+.+.|+.|+||+++|+.++....-.. .|.|. .|+.-...
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~---- 84 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HVIKPEKE---- 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecCcC----
Confidence 345566666655553 4788999999999999998876541000 11111 11111000
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHHHh-----ccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecc
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILISL-----RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRS 293 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~ 293 (863)
. .....++. ..+.+.+ .+++-.+|+|+++.. .....+...+-....++.+|++|.+
T Consensus 85 -------------~---~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 85 -------------G---KSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred -------------C---CcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 0 00111111 2222222 245568889998764 2344444444334456777776666
Q ss_pred hh-hh-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 294 EE-VC-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 294 ~~-v~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
.. +. +.+++.+++.+.+... +. + .+..++..++|.|+.+..+
T Consensus 148 ~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~-~~-------~---~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 148 QKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ-GI-------T---VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhhChHHHHhcceeEeCCCCCHHHHHHHHHHc-CC-------c---hHHHHHHHcCCCHHHHHHH
Confidence 54 32 7788889888877643 10 0 2356789999999876544
No 227
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.43 E-value=0.013 Score=59.02 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=33.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN 218 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~ 218 (863)
.-+++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 45789999999999999999998775 22334678887655554
No 228
>PRK04296 thymidine kinase; Provisional
Probab=96.42 E-value=0.0027 Score=62.13 Aligned_cols=113 Identities=13% Similarity=0.018 Sum_probs=62.1
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLR 254 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (863)
.++.|+|..|.||||+|..++.+. ..+-..++.+. ..++.......++.+++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 467899999999999999988876 22223344442 1112222233455666543321112233444444444 23
Q ss_pred cCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecchh
Q 038405 255 RKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEE 295 (863)
Q Consensus 255 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~ 295 (863)
++.-+||+|.+.-- .+..++...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 35558999998532 1122222221 245778999988754
No 229
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.092 Score=56.15 Aligned_cols=167 Identities=11% Similarity=0.057 Sum_probs=87.6
Q ss_pred hHHHHHHHhhccCC-ceEEEEEcCCCChHHHHhhhhhhcccccc-CCCC-E-----EEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 160 SKLDEVWGCIEDQS-EQTIGLYGMGGVGKITLLKKPNNKFLDVN-HCFD-L-----VIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 160 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~-~-----~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
..-+++.+.+..+. ...+.+.|+.|+||+|+|..++....-.. ..-+ + +-++..+..+|+..+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------- 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-------- 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------
Confidence 34566777776654 45788999999999999998776541000 0000 0 0000011111110000
Q ss_pred CCcccccccChhhHHHHHHHHh-----ccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchhh-h------
Q 038405 232 ISDYIWNMKGEYDRAVEILISL-----RRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEEV-C------ 297 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~v-~------ 297 (863)
.... ......++ +..+.+.+ .+++-++|+|+++... ....+...+-....++.+|++|.+..- .
T Consensus 81 p~~~-~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 81 PEKG-KSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred cccc-cccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 0000 00011111 22222322 3567789999987642 333444444333456677766665442 2
Q ss_pred -----cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 298 -----VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 298 -----l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
+.+++.+++.+.+....+. ..+.+..++..++|.|..+.
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~~--------~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVTM--------SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccCC--------CHHHHHHHHHHcCCCHHHHH
Confidence 7788888888877653221 13447788999999996443
No 230
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.9 Score=46.02 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=90.8
Q ss_pred cccchhhHHHHHHHhhc----------c--CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHH
Q 038405 154 KTVGADSKLDEVWGCIE----------D--QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEK 221 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~ 221 (863)
++.|.+..++.+.+... . ...+-|.++|++|.||+.||++|+... .. -|++||..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSS----- 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSS----- 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehH-----
Confidence 35588888887777651 1 235679999999999999999999876 22 23455543
Q ss_pred HHHHHHHHcCCCcccccccChhhHHHHHHHHh-ccCcEEEEEcccccc------c---ccccccc----c---CCCCCCC
Q 038405 222 IQEVIRKKLDISDYIWNMKGEYDRAVEILISL-RRKKFVLLLDDVWER------L---DLSKTGV----S---LSDCQNG 284 (863)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~------~---~~~~~~~----~---l~~~~~g 284 (863)
++...... ..+.+...+.+.- .+|+-.|.+|.|+.. . .-..|.. . ......|
T Consensus 201 ---DLvSKWmG--------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 201 ---DLVSKWMG--------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred ---HHHHHHhc--------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 22222211 2234555555544 358899999998742 1 1111111 1 1123345
Q ss_pred eEEEEeecchhhh------------cccCCHHHHHH-HHhHhhCccccCCCCChHHHHHHHHHHcCCC
Q 038405 285 SKIVFTTRSEEVC------------VECLSPEAALD-LFRYKVGEDVFNSHPEIPTLAQAVVGECKGL 339 (863)
Q Consensus 285 s~iivTTr~~~v~------------l~~L~~~~a~~-Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 339 (863)
--|+-.|..+-+. --+|++..|+. +|+-+.+... +.-.+...++++++..|.
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTP---HVLTEQDFKELARKTEGY 334 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCc---cccchhhHHHHHhhcCCC
Confidence 4555567666554 44677777754 6766665432 112244556666666554
No 231
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.019 Score=56.03 Aligned_cols=79 Identities=14% Similarity=0.030 Sum_probs=45.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILIS 252 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (863)
.+.+|||.|.+|+||||+|+.++..+ ...+ +.-++... +-...-.....+.....-+.+...+.+-..+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~--~~~I~~D~-YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEK--VVVISLDD-YYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCc--ceEeeccc-cccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45789999999999999999999988 3231 11122111 111111111122222222223455667777888888
Q ss_pred hccCc
Q 038405 253 LRRKK 257 (863)
Q Consensus 253 l~~k~ 257 (863)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 232
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.35 E-value=0.0087 Score=63.07 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=67.0
Q ss_pred chhhHHHHHHHhhcc----CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCC
Q 038405 157 GADSKLDEVWGCIED----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDI 232 (863)
Q Consensus 157 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (863)
++........+++.+ ...+-+.|+|..|+|||.||.++++... ...+ .+.|+++ ..++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEH------HHHHHHHHHHHhc
Confidence 455555555566643 2345689999999999999999999873 2223 3556654 3455555544321
Q ss_pred CcccccccChhhHHHHHHHHhccCcEEEEEcccccc--ccccc--ccccC-CCC-CCCeEEEEeecc
Q 038405 233 SDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWER--LDLSK--TGVSL-SDC-QNGSKIVFTTRS 293 (863)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--~~~~l-~~~-~~gs~iivTTr~ 293 (863)
.+..+ ..+.++ +-=||||||+... .+|.. +...+ ... ..+-.+|+||.-
T Consensus 206 -------~~~~~----~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVKE----KIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -------CcHHH----HHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11111 222232 4568999999643 44542 33322 211 245568888864
No 233
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.018 Score=62.15 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=73.3
Q ss_pred cccchhhHHHHHHHhhcc-CCceE-EEEEcCCCChHHHHhhhhhhccccccC------------------CCCEEEEEEe
Q 038405 154 KTVGADSKLDEVWGCIED-QSEQT-IGLYGMGGVGKITLLKKPNNKFLDVNH------------------CFDLVIFVAV 213 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~F~~~~wv~~ 213 (863)
.++|-+....++..+..+ .+..- +.++|+.|+||||+|..+++....... ....+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356777888888888863 44554 999999999999999999887621000 1123444444
Q ss_pred CCCCC---HHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCeEEE
Q 038405 214 SKEGN---LEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIV 288 (863)
Q Consensus 214 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~ii 288 (863)
+.... ..+..+++.+...... ..++.-++++|+++... .-..+...+......+.+|
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 44433 2333333333332221 03567889999998643 2233333333445677888
Q ss_pred Eeecchh
Q 038405 289 FTTRSEE 295 (863)
Q Consensus 289 vTTr~~~ 295 (863)
++|....
T Consensus 144 l~~n~~~ 150 (325)
T COG0470 144 LITNDPS 150 (325)
T ss_pred EEcCChh
Confidence 8887443
No 234
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.31 E-value=0.018 Score=58.34 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=52.1
Q ss_pred HHHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccccc
Q 038405 161 KLDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWN 238 (863)
Q Consensus 161 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 238 (863)
.+..+.++..+ .....+.++|.+|+|||+||.++++... ..-..+++++ ..++...+..... . .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~-~----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFS-N----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHh-h----c
Confidence 44444444433 2345789999999999999999999872 2234566664 3455555444332 1 0
Q ss_pred ccChhhHHHHHHHHhccCcEEEEEcccccc
Q 038405 239 MKGEYDRAVEILISLRRKKFVLLLDDVWER 268 (863)
Q Consensus 239 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 268 (863)
..+. ..+.+.+. +.=+||+||+...
T Consensus 150 ~~~~----~~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 150 ETSE----EQLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred cccH----HHHHHHhc-cCCEEEEeCCCCC
Confidence 1111 22333454 3448888999653
No 235
>PRK06696 uridine kinase; Validated
Probab=96.30 E-value=0.0049 Score=62.24 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=35.0
Q ss_pred chhhHHHHHHHhhc---cCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 157 GADSKLDEVWGCIE---DQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 157 Gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|++.+++|.+.+. .+...+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 36677777877774 3567899999999999999999999876
No 236
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.30 E-value=0.013 Score=70.38 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=36.8
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+++.|.+..++++.+++.- ...+-|.++|++|+||||||+.+++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 3467999999888877631 223568899999999999999999876
No 237
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.29 E-value=0.021 Score=63.99 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=33.0
Q ss_pred ccccchhhHHHHHHHhh---c----c---CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCI---E----D---QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L---~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+++.|.+..++.+.... . . ...+-|.++|++|.|||.+|+.+++..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 34568777666655422 1 1 234568899999999999999999886
No 238
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.14 Score=58.34 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=59.6
Q ss_pred ccccchhhHHHHHHHhhcc---------CC---ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKLDEVWGCIED---------QS---EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
+++=|.++-+.+|.+-+.- .+ ..=|.++|++|.|||-+|++|+... ...|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------eeeEEeecCH----
Confidence 4455899999999887632 22 2347899999999999999999887 2345666544
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccc
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWE 267 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 267 (863)
++ +..- ...+++...+...+.=..+++.|.+|.+++
T Consensus 740 EL----LNMY-------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 EL----LNMY-------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HH----HHHH-------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 12 1111 122333333333333345899999999976
No 239
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.27 E-value=0.012 Score=61.85 Aligned_cols=88 Identities=15% Similarity=0.087 Sum_probs=56.7
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHH
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVE 248 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~ 248 (863)
+.-+++-|+|.+|+||||||.++.... ...-..++|++.-+.++.. .+++++...... +..+.++....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 345799999999999999999987765 2234567898776665543 345555432211 22344444544
Q ss_pred HHHHhc-cCcEEEEEccccc
Q 038405 249 ILISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 249 l~~~l~-~k~~LlVlDdv~~ 267 (863)
+...++ +..-+||+|.|-.
T Consensus 125 ~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHHhhccCCcEEEEcchhh
Confidence 544443 4567899999864
No 240
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.25 E-value=0.0087 Score=57.97 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEE
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFV 211 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 211 (863)
...+|.+.|+.|+||||+|+.++... ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 34689999999999999999999887 3455555555
No 241
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.25 E-value=0.025 Score=67.91 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=34.9
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++.|.+..++++.+.+.- ...+-|.++|++|+|||++|+++++..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 3466888887777765521 223458899999999999999999886
No 242
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.25 E-value=0.095 Score=57.74 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH--HHHHHHHHHHcCCCcccc-cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL--EKIQEVIRKKLDISDYIW-NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 249 (863)
...++.++|.+|+||||.|..++.... .+.. ..++.|+.. .+.. .+-++...+..+.+.... ...++.+.+...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~-~~~g-~kV~lV~~D-~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK-KKQG-KKVLLVACD-LYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HhCC-CeEEEEecc-ccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 357899999999999999988887651 1111 234444443 2332 333445566666553221 123444554444
Q ss_pred HHHhccCcE-EEEEcccc
Q 038405 250 LISLRRKKF-VLLLDDVW 266 (863)
Q Consensus 250 ~~~l~~k~~-LlVlDdv~ 266 (863)
.+....+.| ++|+|-.-
T Consensus 175 l~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 444545555 77777764
No 243
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.23 E-value=0.0014 Score=75.22 Aligned_cols=109 Identities=21% Similarity=0.188 Sum_probs=59.7
Q ss_pred CCCccEEEeecc-cccccc-hhhhhcCCCccEEeccCC-cCccccc----hhhhcccccceeeccCCC-cccc--chhhh
Q 038405 520 CPHLQTLLVRFT-VLEIFP-HRFFESMGALKVLDLSYN-LDLTQLP----AEMGALINLRCLNLSNTS-IEEL--PSEIM 589 (863)
Q Consensus 520 ~~~Lr~L~l~~~-~l~~l~-~~~~~~l~~L~~L~Ls~~-~~i~~lp----~~i~~L~~L~~L~L~~~~-i~~l--P~~i~ 589 (863)
++.|+.|.+.++ .+.... ......+++|+.|+++++ ..+...+ .....+.+|+.|+++++. ++.. ..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 567777777766 333311 223556778888888762 2222222 223455777778887775 4432 11122
Q ss_pred cccCccEEecCCCCCcccc-chhhhcCCCCCceeeccCcc
Q 038405 590 YLKNLKILLLDGMRHFHLI-PARVFSSLLSLKVFSLFSTE 628 (863)
Q Consensus 590 ~L~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~ 628 (863)
.+++|++|.+.+|..+..- -..+..++++|++|++++|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3677777777776532211 11223466777777777654
No 244
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.22 E-value=0.015 Score=70.83 Aligned_cols=46 Identities=28% Similarity=0.376 Sum_probs=37.9
Q ss_pred ccccchhhHHHHHHHhhccC---------CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQ---------SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.+..++.+...+... ...++.++|+.|+|||++|+.++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999888431 24578899999999999999999765
No 245
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.21 E-value=0.0047 Score=57.14 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=31.7
Q ss_pred EEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHH
Q 038405 177 IGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQE 224 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 224 (863)
|-++|.+|+|||+||+.++... .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 6789999999999999999876 11 345567788777777654
No 246
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.19 E-value=0.0075 Score=72.13 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=36.5
Q ss_pred ccccchhhHHHHHHHhhcc-------C--CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED-------Q--SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4467888888888887742 1 23468899999999999999998865
No 247
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.16 E-value=0.01 Score=66.68 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=55.8
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
+.-+++.++|++|+||||||.-++++. + | .++=|..|+..+...+-..|...+....
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----G-Y-sVvEINASDeRt~~~v~~kI~~avq~~s----------------- 380 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----G-Y-SVVEINASDERTAPMVKEKIENAVQNHS----------------- 380 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----C-c-eEEEecccccccHHHHHHHHHHHHhhcc-----------------
Confidence 345789999999999999999998764 2 2 4677888988888888777777664432
Q ss_pred Hh--ccCcEEEEEcccccc
Q 038405 252 SL--RRKKFVLLLDDVWER 268 (863)
Q Consensus 252 ~l--~~k~~LlVlDdv~~~ 268 (863)
.+ .+++.-||+|.++..
T Consensus 381 ~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccccCCCcceEEEecccCC
Confidence 12 157788899988764
No 248
>PRK04132 replication factor C small subunit; Provisional
Probab=96.15 E-value=0.063 Score=63.75 Aligned_cols=141 Identities=11% Similarity=0.058 Sum_probs=84.6
Q ss_pred CCCChHHHHhhhhhhccccccCCC-CEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEE
Q 038405 182 MGGVGKITLLKKPNNKFLDVNHCF-DLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVL 260 (863)
Q Consensus 182 ~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 260 (863)
+.|+||||+|..++++.- ...+ ...+-++.++..+...+...+-+...... . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~----~-------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIREKVKEFARTKP----I-------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC----c-------------CCCCCEEE
Confidence 778999999999998862 1222 24566777766555544433322221110 0 01245799
Q ss_pred EEccccccc--ccccccccCCCCCCCeEEEEeecchhhh------------cccCCHHHHHHHHhHhhCccccCCCCChH
Q 038405 261 LLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEEVC------------VECLSPEAALDLFRYKVGEDVFNSHPEIP 326 (863)
Q Consensus 261 VlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~v~------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~ 326 (863)
|+|+++... ....+...+-.....+++|++|.+..-. +.+++.++-.+.+...+....... ..
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~~ 711 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---TE 711 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---CH
Confidence 999998653 3444444443334456676666554322 778888888877776654322211 25
Q ss_pred HHHHHHHHHcCCChHHHH
Q 038405 327 TLAQAVVGECKGLPLALI 344 (863)
Q Consensus 327 ~~~~~i~~~c~glPLai~ 344 (863)
+....|++.++|.+-.+.
T Consensus 712 e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 678899999999885443
No 249
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.10 E-value=0.015 Score=61.20 Aligned_cols=87 Identities=17% Similarity=0.082 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (863)
.-+++-|+|++|+||||||.+++... ...-..++|++.-..++.. .++.++...... +..+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45789999999999999999987665 2234568899877766653 344454432211 222444555545
Q ss_pred HHHhc-cCcEEEEEccccc
Q 038405 250 LISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 250 ~~~l~-~k~~LlVlDdv~~ 267 (863)
...++ +.--+||+|.|-.
T Consensus 126 ~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHhccCCCEEEEcchHh
Confidence 44443 3567899999853
No 250
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.10 E-value=0.024 Score=57.91 Aligned_cols=93 Identities=12% Similarity=0.116 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccC----CCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc-------ccccC
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNH----CFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI-------WNMKG 241 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 241 (863)
.-.++.|+|.+|+|||+||.+++... .... ....++|++....++..++.+ +++..+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 45789999999999999999987543 1111 136899999888777655433 33333321100 01122
Q ss_pred hhh---HHHHHHHHhc-c-CcEEEEEccccc
Q 038405 242 EYD---RAVEILISLR-R-KKFVLLLDDVWE 267 (863)
Q Consensus 242 ~~~---~~~~l~~~l~-~-k~~LlVlDdv~~ 267 (863)
.++ ....+.+.+. . +.-+||+|.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 222 2233444442 3 566888888753
No 251
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.09 E-value=0.31 Score=52.66 Aligned_cols=198 Identities=15% Similarity=0.155 Sum_probs=118.9
Q ss_pred hhhHHHHHHHhhccCCceEEEEEcCCCChHHHHh-hhhhhccccccCCCCEEEEEEeCCC---CCHHHHHHHHHHHcCCC
Q 038405 158 ADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLL-KKPNNKFLDVNHCFDLVIFVAVSKE---GNLEKIQEVIRKKLDIS 233 (863)
Q Consensus 158 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~~l~~~ 233 (863)
|.+.+++|..||.+..-..|.|.|+-|+||+.|+ .++..+. + .++.+.+.+- .+-..+...++.++|--
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r---~----~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR---K----NVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC---C----CEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5678899999999988889999999999999999 6666554 1 2666665432 23345555555555321
Q ss_pred -----------------------cccccccChhhHHHH-------HHH-------------------Hhc---cCcEEEE
Q 038405 234 -----------------------DYIWNMKGEYDRAVE-------ILI-------------------SLR---RKKFVLL 261 (863)
Q Consensus 234 -----------------------~~~~~~~~~~~~~~~-------l~~-------------------~l~---~k~~LlV 261 (863)
...+....+.++... |++ +|. .+|=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 100111111111111 111 010 1255899
Q ss_pred Ecccccccc-----cc---cccccCCCCCCCeEEEEeecchhhh----------------cccCCHHHHHHHHhHhhCcc
Q 038405 262 LDDVWERLD-----LS---KTGVSLSDCQNGSKIVFTTRSEEVC----------------VECLSPEAALDLFRYKVGED 317 (863)
Q Consensus 262 lDdv~~~~~-----~~---~~~~~l~~~~~gs~iivTTr~~~v~----------------l~~L~~~~a~~Lf~~~~~~~ 317 (863)
+|+.....+ |+ ++...+- ..+-.+||++|-+.... +...+++.|.++...+....
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 999864321 11 1112221 23456899988876654 67788999999988887543
Q ss_pred ccC------------CC-----CChHHHHHHHHHHcCCChHHHHHHHHHHhCCCCh-hhHHHHH
Q 038405 318 VFN------------SH-----PEIPTLAQAVVGECKGLPLALITIARAMSSRRSP-REWQYVI 363 (863)
Q Consensus 318 ~~~------------~~-----~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~-~~w~~~~ 363 (863)
... .. .....-....++..||=-.-+..+++.++...++ +.-+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI 296 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEII 296 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 100 00 1234556678888999999999999999876443 3334443
No 252
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.08 E-value=0.0044 Score=59.01 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=72.6
Q ss_pred EEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhcc-
Q 038405 177 IGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRR- 255 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~- 255 (863)
+.|.|.+|+|||++|.++.... ...++|+.-.+.++.+ ..+.|...-.... ......+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~---~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRP---AHWRTIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCC---CCceEeecHHHHHHHHHhc
Confidence 6799999999999999987542 2356778777777653 4444443222222 223333444455555532
Q ss_pred -CcEEEEEccccc--ccc---------------cccccccCCCCCCCeEEEEeecchhhhcccCCHHHHHHHHhHhhCc
Q 038405 256 -KKFVLLLDDVWE--RLD---------------LSKTGVSLSDCQNGSKIVFTTRSEEVCVECLSPEAALDLFRYKVGE 316 (863)
Q Consensus 256 -k~~LlVlDdv~~--~~~---------------~~~~~~~l~~~~~gs~iivTTr~~~v~l~~L~~~~a~~Lf~~~~~~ 316 (863)
+.-.+++|.+-. ... +.++...+ ...+..+|+||. +|.....+.+..-..|....+.
T Consensus 72 ~~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l--~~~~~~~viVsn--EvG~g~vp~~~~~r~f~d~lG~ 146 (169)
T cd00544 72 DPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAV--RNKPGTLILVSN--EVGLGVVPENALGRRFRDELGR 146 (169)
T ss_pred CCCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHH--HcCCCcEEEEEC--CcCCCCCCCCHHHHHHHHHHHH
Confidence 233789998632 100 01111122 234556777764 6666667777777788776653
No 253
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.07 E-value=0.0059 Score=67.92 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=39.9
Q ss_pred cccchhhHHHHHHHhh------ccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCI------EDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+++|.++.+++|++.| .+..-+++.++|++|+||||||+.+++-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 5789999999999998 23566899999999999999999999876
No 254
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.03 E-value=0.011 Score=71.69 Aligned_cols=46 Identities=26% Similarity=0.336 Sum_probs=36.8
Q ss_pred ccccchhhHHHHHHHhhcc-------C--CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED-------Q--SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|-+..++.+.+.+.. . ...++.++|+.|+|||+||+.++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999999999888742 1 23457789999999999999998765
No 255
>PRK09354 recA recombinase A; Provisional
Probab=96.03 E-value=0.019 Score=60.97 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (863)
.-+++-|+|++|+||||||.+++... ...-..++|++.-..++.. .++.++...... +..+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45789999999999999999987765 2334678899888777753 345555432211 223344554444
Q ss_pred HHHhc-cCcEEEEEccccc
Q 038405 250 LISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 250 ~~~l~-~k~~LlVlDdv~~ 267 (863)
...++ ++--+||+|.|-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 44443 3566899999853
No 256
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.02 E-value=0.0027 Score=37.33 Aligned_cols=19 Identities=32% Similarity=0.587 Sum_probs=9.9
Q ss_pred cceeeccCCCccccchhhh
Q 038405 571 LRCLNLSNTSIEELPSEIM 589 (863)
Q Consensus 571 L~~L~L~~~~i~~lP~~i~ 589 (863)
|++||+++|+|+.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 257
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.00 E-value=0.0018 Score=64.00 Aligned_cols=84 Identities=26% Similarity=0.355 Sum_probs=57.7
Q ss_pred hcCCCccEEeccCCcCccccchhhhcccccceeeccCC--Ccc-ccchhhhcccCccEEecCCCCC--ccccchhhhcCC
Q 038405 542 ESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNT--SIE-ELPSEIMYLKNLKILLLDGMRH--FHLIPARVFSSL 616 (863)
Q Consensus 542 ~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~--~i~-~lP~~i~~L~~L~~L~l~~~~~--l~~lp~~~i~~L 616 (863)
-.+..|..|++.++ .++.+- .+-.|++|++|+++.| ++. .++....++++|++|++++|+. +.++++ +..+
T Consensus 40 d~~~~le~ls~~n~-gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINV-GLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKEL 115 (260)
T ss_pred ccccchhhhhhhcc-ceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhh
Confidence 34556667777666 443332 2445889999999999 444 5666667779999999999973 334444 5677
Q ss_pred CCCceeeccCcch
Q 038405 617 LSLKVFSLFSTEL 629 (863)
Q Consensus 617 ~~L~~L~l~~~~~ 629 (863)
.+|..|++++|..
T Consensus 116 ~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 116 ENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCc
Confidence 8888888887653
No 258
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.99 E-value=0.0066 Score=55.34 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-|+|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 458999999999999999999887
No 259
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.99 E-value=0.014 Score=55.65 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=31.0
Q ss_pred EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN 218 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~ 218 (863)
++.|+|.+|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 46899999999999999998876 22345678887766543
No 260
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.99 E-value=0.012 Score=71.15 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=37.3
Q ss_pred ccccchhhHHHHHHHhhcc---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.+..++.+.+.+.. ....++.++|+.|+|||.||+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999888732 234578999999999999999887765
No 261
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.96 E-value=0.21 Score=53.33 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=50.7
Q ss_pred cCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecchh-hh-----------cccCCHHHHHHHHhHhhCccccC
Q 038405 255 RKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEE-VC-----------VECLSPEAALDLFRYKVGEDVFN 320 (863)
Q Consensus 255 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~-v~-----------l~~L~~~~a~~Lf~~~~~~~~~~ 320 (863)
+++-++|+|+++.. .....+...+-...+++.+|++|.+.+ +. +.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC----
Confidence 45668889999864 334444444444455676666666544 32 7888999998888764 11
Q ss_pred CCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 321 SHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 321 ~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
++ ...++..++|.|..+..+
T Consensus 206 --~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999755543
No 262
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.95 E-value=0.024 Score=58.07 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=47.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILIS 252 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (863)
+..-+.++|.+|+|||.||.++.++.. ..-..+.|++ ..++..++...... .....++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~------~~el~~~Lk~~~~~----------~~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFIT------APDLLSKLKAAFDE----------GRLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhc----------CchHHHHHHH
Confidence 556789999999999999999999982 2223556664 45566666555432 1112222222
Q ss_pred hccCcEEEEEccccc
Q 038405 253 LRRKKFVLLLDDVWE 267 (863)
Q Consensus 253 l~~k~~LlVlDdv~~ 267 (863)
++ +-=||||||+-.
T Consensus 165 l~-~~dlLIiDDlG~ 178 (254)
T COG1484 165 LK-KVDLLIIDDIGY 178 (254)
T ss_pred hh-cCCEEEEecccC
Confidence 22 334899999854
No 263
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.92 E-value=0.032 Score=59.92 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE-GNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILIS 252 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (863)
-.+++++|+.|+||||++..++.... .+.....+.+++.... ....+-++...+.++.+.. ...+..+....+ ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l-~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLAL-AE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHH-HH
Confidence 46899999999999999999988751 1111234556653321 2334455666667776542 122333333333 33
Q ss_pred hccCcEEEEEcccc
Q 038405 253 LRRKKFVLLLDDVW 266 (863)
Q Consensus 253 l~~k~~LlVlDdv~ 266 (863)
+.++ -++++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4454 456688874
No 264
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.89 E-value=0.026 Score=54.46 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++.++|++|+||||+++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 265
>PRK06547 hypothetical protein; Provisional
Probab=95.89 E-value=0.0097 Score=56.98 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=28.4
Q ss_pred HHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 164 EVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 164 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+...+......+|+|.|.+|+||||+|+.+....
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444556678899999999999999999998765
No 266
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.88 E-value=0.0022 Score=73.55 Aligned_cols=87 Identities=28% Similarity=0.152 Sum_probs=49.8
Q ss_pred hhcCCCccEEeccCCcCccc--cchhhhcccccceeeccCC--Ccccc----chhhhcccCccEEecCCCCCccccchhh
Q 038405 541 FESMGALKVLDLSYNLDLTQ--LPAEMGALINLRCLNLSNT--SIEEL----PSEIMYLKNLKILLLDGMRHFHLIPARV 612 (863)
Q Consensus 541 ~~~l~~L~~L~Ls~~~~i~~--lp~~i~~L~~L~~L~L~~~--~i~~l----P~~i~~L~~L~~L~l~~~~~l~~lp~~~ 612 (863)
...++.|+.|.+.++..+.. +-.....+++|+.|+++++ .+... +.....+++|+.|++++|..+...--..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 34467788888887765554 3344567788888888763 22211 1233456777777777776333222111
Q ss_pred hc-CCCCCceeeccCc
Q 038405 613 FS-SLLSLKVFSLFST 627 (863)
Q Consensus 613 i~-~L~~L~~L~l~~~ 627 (863)
+. .+++|++|.+.+|
T Consensus 264 l~~~c~~L~~L~l~~c 279 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNC 279 (482)
T ss_pred HHhhCCCcceEccCCC
Confidence 22 3667777765543
No 267
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.86 E-value=0.042 Score=61.23 Aligned_cols=177 Identities=14% Similarity=0.152 Sum_probs=98.6
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH--
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK-- 229 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~-- 229 (863)
+++||-+.....|.+.+..+.. ......|+-|+||||+|+-++...- -... ....+++.-...+.|...
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN-C~~~-------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN-CENG-------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc-CCCC-------CCCCcchhhhhhHhhhcCCc
Confidence 4679999999999999976543 4567899999999999998876541 1110 111122222222333222
Q ss_pred cCCCcccccccChhhHHHHHHHHh-----ccCcEEEEEccccc--ccccccccccCCCCCCCeEEEEeec-chhhh----
Q 038405 230 LDISDYIWNMKGEYDRAVEILISL-----RRKKFVLLLDDVWE--RLDLSKTGVSLSDCQNGSKIVFTTR-SEEVC---- 297 (863)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~gs~iivTTr-~~~v~---- 297 (863)
+.+-.-+-...+..+-.+.|.+.. +++.=..|+|.|.- ...|..+..-+-.....-+.|+.|+ -..+.
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 000000000111122223333333 35666889999974 3456555554433333445444444 44443
Q ss_pred -------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 298 -------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 298 -------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
++.++.++-...+...+.......+ .+...-|++..+|..
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCCh
Confidence 7888999888888887765543322 456666777776654
No 268
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.85 E-value=0.012 Score=54.38 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=32.6
Q ss_pred cchhhHHHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 156 VGADSKLDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 156 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
||....++++.+.+.. .....|.|+|-.|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 5777777777777744 445667899999999999999998876
No 269
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.85 E-value=0.0036 Score=59.82 Aligned_cols=129 Identities=17% Similarity=0.141 Sum_probs=66.5
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc-cChhhHHHHHHHHh
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNM-KGEYDRAVEILISL 253 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l~~~l 253 (863)
.+|.|.|.+|+||||+|..+.... .. .++++.-...++ .+..+.|..........|.. ....++...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998764 11 234444444433 34555554443322222211 12223444443333
Q ss_pred ccCcEEEEEcccccc----------cccc----cccccCCCCCCCeEEEEeecchhhhcccCCHHHHHHHHhHhhC
Q 038405 254 RRKKFVLLLDDVWER----------LDLS----KTGVSLSDCQNGSKIVFTTRSEEVCVECLSPEAALDLFRYKVG 315 (863)
Q Consensus 254 ~~k~~LlVlDdv~~~----------~~~~----~~~~~l~~~~~gs~iivTTr~~~v~l~~L~~~~a~~Lf~~~~~ 315 (863)
.+ .-++++|.+-.- ..|. .+...+ ...+..+|+||. ++.....+.+..-..|....+
T Consensus 75 ~~-~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L--~~~~~tvVlVs~--Evg~g~vp~~~~~r~~~d~lG 145 (170)
T PRK05800 75 AP-GRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAAL--QQLPAKIILVTN--EVGMGIVPEYRLGRHFRDIAG 145 (170)
T ss_pred CC-CCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHH--HcCCCCEEEEEc--CCcccccCCCHHHHHHHHHHH
Confidence 32 337888986321 1111 121222 234556777764 333444555566666766554
No 270
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.82 E-value=0.21 Score=54.81 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|.++|..|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999888766
No 271
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.81 E-value=0.04 Score=54.27 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
||+|.|.+|+||||+|+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999887
No 272
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.80 E-value=0.15 Score=50.37 Aligned_cols=160 Identities=16% Similarity=0.260 Sum_probs=87.0
Q ss_pred ccccchhhHHHH---HHHhhccC------CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHH
Q 038405 153 EKTVGADSKLDE---VWGCIEDQ------SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQ 223 (863)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 223 (863)
++.||.++.+.+ |++.|.++ ..+-|..+|++|.|||-+|+++++.. +-.| +.+. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vk-------at 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVK-------AT 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEec-------hH
Confidence 457898876654 56677552 35779999999999999999999987 2222 1111 11
Q ss_pred HHHHHHcCCCcccccccChhhHHHHHHHHh-ccCcEEEEEcccccc----------ccccccccc----CC--CCCCCeE
Q 038405 224 EVIRKKLDISDYIWNMKGEYDRAVEILISL-RRKKFVLLLDDVWER----------LDLSKTGVS----LS--DCQNGSK 286 (863)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~~~~----l~--~~~~gs~ 286 (863)
+-|.+..| +....+.++.++- +.-++.+.+|.++.. .+..++..+ +. ..+.|-.
T Consensus 186 ~liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ELIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 11222211 1222333333333 246899999987642 111122111 11 2345666
Q ss_pred EEEeecchhhh-------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 287 IVFTTRSEEVC-------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 287 iivTTr~~~v~-------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
-|-.|.+.+.. ..--+++|-.+++...+..-.. .+..-.+.++++.+|+.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Pl----pv~~~~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPL----PVDADLRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCC----ccccCHHHHHHHhCCCC
Confidence 66667666554 2334566667777766532211 11223555666666643
No 273
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.79 E-value=0.032 Score=57.37 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccc-c--ccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc-------ccccChh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFL-D--VNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI-------WNMKGEY 243 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~--~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~ 243 (863)
-.+.=|+|.+|+|||.|+.+++-... . ..+.=..++|++-...|...++. +|++..+..... ....+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 46889999999999999987764320 0 11223579999988889888775 466665443211 0122333
Q ss_pred hHHHH---HHHHh-ccCcEEEEEccccc
Q 038405 244 DRAVE---ILISL-RRKKFVLLLDDVWE 267 (863)
Q Consensus 244 ~~~~~---l~~~l-~~k~~LlVlDdv~~ 267 (863)
++... +...+ .++--|||+|.+-.
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHH
Confidence 33332 22333 24555888898743
No 274
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.79 E-value=0.033 Score=52.01 Aligned_cols=117 Identities=17% Similarity=0.116 Sum_probs=61.2
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC---CCHHHHHHHHH--H--HcCCCcccccccChhh---
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE---GNLEKIQEVIR--K--KLDISDYIWNMKGEYD--- 244 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~--~--~l~~~~~~~~~~~~~~--- 244 (863)
..|-|++-.|.||||+|...+-+. ..+=..+.++.+-+. ..-..+++.+- . +.+.. ..+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~-~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRG-FFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCC-CccCCCChHHHHH
Confidence 467888888999999999887765 223234555554443 23333333330 0 00100 0000111111
Q ss_pred ----HHHHHHHHhcc-CcEEEEEcccccc-----cccccccccCCCCCCCeEEEEeecchh
Q 038405 245 ----RAVEILISLRR-KKFVLLLDDVWER-----LDLSKTGVSLSDCQNGSKIVFTTRSEE 295 (863)
Q Consensus 245 ----~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~iivTTr~~~ 295 (863)
.....++.+.. +-=|+|||++-.. .+.+++...+.....+..||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223333433 4569999998643 223334444444455778999999854
No 275
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.79 E-value=0.085 Score=54.24 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=78.9
Q ss_pred cccchhhHHHHHHHhhcc----CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHH-HHHHHHH
Q 038405 154 KTVGADSKLDEVWGCIED----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEK-IQEVIRK 228 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~-~~~~i~~ 228 (863)
.++|-.++..++-.++.. ++..-+.|+|+.|.|||+|...+..+..+...+ .+-|......-.++ .++.|..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHHHH
Confidence 478998888888888854 555678899999999999988777664222333 34444444433222 3444544
Q ss_pred HcCCCcc--cccccChhhHHHHHHHHhcc------CcEEEEEcccccccc------ccc-ccccCCCCCCCeEEEEeecc
Q 038405 229 KLDISDY--IWNMKGEYDRAVEILISLRR------KKFVLLLDDVWERLD------LSK-TGVSLSDCQNGSKIVFTTRS 293 (863)
Q Consensus 229 ~l~~~~~--~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~------~~~-~~~~l~~~~~gs~iivTTr~ 293 (863)
++..... .....+..+...++.+.|+. -++..|+|.++-... +-. +...-....+-|-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 4432211 01233445556666666653 268888888764211 000 00111123456777799986
Q ss_pred h
Q 038405 294 E 294 (863)
Q Consensus 294 ~ 294 (863)
.
T Consensus 182 d 182 (408)
T KOG2228|consen 182 D 182 (408)
T ss_pred c
Confidence 4
No 276
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.77 E-value=0.014 Score=57.80 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=57.2
Q ss_pred CCCccEEEeecccccccc----hhhhhcCCCccEEeccCCc---Cccccch-------hhhcccccceeeccCCCcc-cc
Q 038405 520 CPHLQTLLVRFTVLEIFP----HRFFESMGALKVLDLSYNL---DLTQLPA-------EMGALINLRCLNLSNTSIE-EL 584 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~----~~~~~~l~~L~~L~Ls~~~---~i~~lp~-------~i~~L~~L~~L~L~~~~i~-~l 584 (863)
+..+..++|++|.+..-. ...+.+-++|++-+++.-. ...++|+ .+-+|++|+..+||.|.+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 556777888888553221 1224556788888887641 1123333 3457899999999999654 33
Q ss_pred ch----hhhcccCccEEecCCCCCcccc
Q 038405 585 PS----EIMYLKNLKILLLDGMRHFHLI 608 (863)
Q Consensus 585 P~----~i~~L~~L~~L~l~~~~~l~~l 608 (863)
|+ -|+.-+.|.||.+++|. +..+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 43 35677889999999886 4443
No 277
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.24 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
=-.++|++|.|||+++.++++..
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc
Confidence 35689999999999999999987
No 278
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.74 E-value=0.013 Score=57.86 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=56.3
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLR 254 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (863)
.+|.|+|+.|+||||++..+.... .......++. +.++. +...... ..+ ..... ...+.......++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t-~e~~~--E~~~~~~-~~~-i~q~~-vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILT-IEDPI--EFVHESK-RSL-INQRE-VGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEE-EcCCc--cccccCc-cce-eeecc-cCCCccCHHHHHHHHhc
Confidence 478999999999999999887765 2222333332 22221 1000000 000 00000 01122345566777777
Q ss_pred cCcEEEEEcccccccccccccccCCCCCCCeEEEEeecc
Q 038405 255 RKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRS 293 (863)
Q Consensus 255 ~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~ 293 (863)
...=.|++|++.+...+....... ..|-.++.|+-.
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha 108 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHT 108 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecC
Confidence 777799999997765444332221 234456666643
No 279
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.74 E-value=0.059 Score=54.93 Aligned_cols=48 Identities=17% Similarity=0.096 Sum_probs=35.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 225 (863)
.-.++.|.|.+|+|||++|.++.... -..-..++|++...+ ..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeCC--HHHHHHH
Confidence 45789999999999999999876654 123457888887653 4455554
No 280
>PTZ00301 uridine kinase; Provisional
Probab=95.69 E-value=0.014 Score=57.71 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|||.|.+|+||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988765
No 281
>PRK07667 uridine kinase; Provisional
Probab=95.68 E-value=0.018 Score=56.57 Aligned_cols=37 Identities=16% Similarity=0.386 Sum_probs=29.0
Q ss_pred HHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 162 LDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 162 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+.|.+.+.. ....+|||.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555533 445799999999999999999998876
No 282
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.66 E-value=0.33 Score=52.13 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC--HHHHHHHHHHHcCCCcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN--LEKIQEVIRKKLDISDY 235 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~ 235 (863)
...||-.+|.-|.||||-|-.+++.+. . ....+-+...+.+. ..+-++.+.++.+.+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk---k-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK---K-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH---H-cCCceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 347899999999999999999888873 2 22233333334443 33456778888876653
No 283
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.66 E-value=0.0071 Score=54.98 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHhhhhhhcc
Q 038405 177 IGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|+|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998873
No 284
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.65 E-value=0.044 Score=57.29 Aligned_cols=88 Identities=23% Similarity=0.259 Sum_probs=47.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
..++|+|+|++|+||||++..++.... .+..-..+..++..... ...+.+....+.++.+.. ...+..++...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 347999999999999999999887762 22111345666644321 122233334444554431 1233334433333
Q ss_pred HhccCcEEEEEccc
Q 038405 252 SLRRKKFVLLLDDV 265 (863)
Q Consensus 252 ~l~~k~~LlVlDdv 265 (863)
.+.+ .=+|++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3333 346677753
No 285
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.64 E-value=0.014 Score=69.06 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=37.2
Q ss_pred ccccchhhHHHHHHHhhcc---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|-++.++.+.+.+.. .....+.++|+.|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999888888742 124578899999999999999998876
No 286
>PHA00729 NTP-binding motif containing protein
Probab=95.63 E-value=0.013 Score=58.04 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=28.4
Q ss_pred HHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 164 EVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 164 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555555666779999999999999999998874
No 287
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.07 Score=59.04 Aligned_cols=141 Identities=16% Similarity=0.232 Sum_probs=77.3
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLR 254 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (863)
.=|.+||++|.|||-||++|+|.. +..| ++|..+ +++. .. ...++......+++.=.
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlN----kY-------VGESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLN----KY-------VGESERAVRQVFQRARA 602 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHH----HH-------hhhHHHHHHHHHHHhhc
Confidence 347799999999999999999987 4444 444333 2221 11 11222222223333334
Q ss_pred cCcEEEEEcccccc-------cc------cccccccCC--CCCCCeEEEEeecchhhh---------------cccCCHH
Q 038405 255 RKKFVLLLDDVWER-------LD------LSKTGVSLS--DCQNGSKIVFTTRSEEVC---------------VECLSPE 304 (863)
Q Consensus 255 ~k~~LlVlDdv~~~-------~~------~~~~~~~l~--~~~~gs~iivTTr~~~v~---------------l~~L~~~ 304 (863)
.-++.|.+|.++.. .. ...+..-+. ....|--||-.|..+++. +..-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 57999999999742 11 111111121 123455667666666554 4555677
Q ss_pred HHHHHHhHhhCc--cccCCCCChHHHHHHHHHHcCCCh
Q 038405 305 AALDLFRYKVGE--DVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 305 ~a~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
|-.++++..... .....+-+++++++. .+|.|.-
T Consensus 683 eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 683 ERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 888888877653 222233344554433 3555554
No 288
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.61 E-value=0.018 Score=59.65 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=32.1
Q ss_pred chhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhh
Q 038405 157 GADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPN 195 (863)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~ 195 (863)
+|..+-.--.++|.++++..|.+.|.+|.|||-||-+..
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHH
Confidence 456666667788899999999999999999998876543
No 289
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.024 Score=63.53 Aligned_cols=73 Identities=27% Similarity=0.284 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC--CCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE--GNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
..-|.|.|..|+|||+||+++++... +...-.+.+|+.+.- ...+++++.+.. .+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-------------------vfse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-------------------VFSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHH-------------------HHHH
Confidence 34688999999999999999999883 444445566665533 223333333322 2234
Q ss_pred HhccCcEEEEEccccc
Q 038405 252 SLRRKKFVLLLDDVWE 267 (863)
Q Consensus 252 ~l~~k~~LlVlDdv~~ 267 (863)
.+...+-+|||||++.
T Consensus 490 ~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHhhCCcEEEEcchhh
Confidence 5567889999999964
No 290
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.027 Score=51.47 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=35.5
Q ss_pred EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISD 234 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 234 (863)
+|.|-|.+|+||||+|+.++++. .-.| + +...+++++++..+++-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----e------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999887 1111 1 34578899999888764
No 291
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.59 E-value=0.041 Score=59.96 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC-HHHHHHHHHHHcCCCcccc----cccCh-----
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN-LEKIQEVIRKKLDISDYIW----NMKGE----- 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~----~~~~~----- 242 (863)
.-..++|+|..|+|||||++.++... ..+.++++-+++... +.++.+.++..-+...... .+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 44679999999999999999998654 225666676766543 4555555544322211100 01111
Q ss_pred -hhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 243 -YDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 -~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
...+..+.+++ +++++|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 11223455665 57999999999854
No 292
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.59 E-value=0.042 Score=58.09 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccc---cCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc-------cccCh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDV---NHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW-------NMKGE 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 242 (863)
.-+++-|+|.+|+|||+|+.+++-...-. ...=..++|++.-..|+.+++.+ +++.++...... ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 45788999999999999998866432000 11224789999998888888754 566665542110 11123
Q ss_pred hhHH---HHHHHHhc-cCcEEEEEccccc
Q 038405 243 YDRA---VEILISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 243 ~~~~---~~l~~~l~-~k~~LlVlDdv~~ 267 (863)
++.. ..+...+. ++--|||+|.+-.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 3332 23333332 3455788888753
No 293
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.11 Score=59.93 Aligned_cols=164 Identities=15% Similarity=0.170 Sum_probs=89.0
Q ss_pred ccccchhhHH---HHHHHhhccC---------CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKL---DEVWGCIEDQ---------SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~---~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
.++.|-|+.+ ++++++|.++ -.+=+.++|++|.|||-||++++-.. . +-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH----
Confidence 3466877655 4555566542 12347899999999999999999876 2 234455433
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHHHh-ccCcEEEEEcccccccc-----------------cccccccCCCCC
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILISL-RRKKFVLLLDDVWERLD-----------------LSKTGVSLSDCQ 282 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-----------------~~~~~~~l~~~~ 282 (863)
+..+.+.... ..+...+...- +..++.|.+|+++.... +..+...+....
T Consensus 379 ----EFvE~~~g~~--------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 ----EFVEMFVGVG--------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ----HHHHHhcccc--------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 1222221110 11222222222 24677888888764211 111111111112
Q ss_pred CCe-EE-EEeecchhhh---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHH
Q 038405 283 NGS-KI-VFTTRSEEVC---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLAL 343 (863)
Q Consensus 283 ~gs-~i-ivTTr~~~v~---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 343 (863)
.++ .| +-+|+..++. ++.-+.....++|..++..... ..+..++++ |+...-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH-HHhcCCCCcHHH
Confidence 222 33 3455555554 4445566777888888765432 234466777 888888887543
No 294
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.57 E-value=0.035 Score=60.14 Aligned_cols=87 Identities=23% Similarity=0.264 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL 253 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (863)
-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++. .-++.++.......... +.....+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~-e~~le~I~~~i 154 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLA-ETNLEDILASI 154 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEc-cCcHHHHHHHH
Confidence 46899999999999999999987762 22346788876543 33332 22345554322111111 11122333333
Q ss_pred c-cCcEEEEEccccc
Q 038405 254 R-RKKFVLLLDDVWE 267 (863)
Q Consensus 254 ~-~k~~LlVlDdv~~ 267 (863)
. .+.-+||+|.+..
T Consensus 155 ~~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 EELKPDLVIIDSIQT 169 (372)
T ss_pred HhcCCcEEEEcchHH
Confidence 2 3667899999854
No 295
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.54 E-value=0.015 Score=59.05 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....+|+|.|..|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999876
No 296
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.53 E-value=0.062 Score=57.45 Aligned_cols=87 Identities=22% Similarity=0.233 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH--HHHHHHHHHcCCCcccccccChhhHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE--KIQEVIRKKLDISDYIWNMKGEYDRAVEIL 250 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (863)
..++|+++|.+|+||||++..++.... ...+ .+..++.. .+... +-++...+.++.+.. ...+...+...+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHH
Confidence 347999999999999999999987762 1222 34455543 33322 223344445555432 2334555554443
Q ss_pred HHhcc--CcEEEEEcccc
Q 038405 251 ISLRR--KKFVLLLDDVW 266 (863)
Q Consensus 251 ~~l~~--k~~LlVlDdv~ 266 (863)
. ++. +.=+|++|-.-
T Consensus 314 ~-lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 314 Y-FKEEARVDYILIDTAG 330 (436)
T ss_pred H-HHhccCCCEEEEeCcc
Confidence 3 332 23466777653
No 297
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.49 E-value=0.058 Score=57.67 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccC----CCCEEEEEEeCCCCCHHHHHHHHHHHcCC
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNH----CFDLVIFVAVSKEGNLEKIQEVIRKKLDI 232 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (863)
.-.++-|+|.+|+|||+++.+++.... ... .=..++|++....|+..++.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~-~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQ-LPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhc-cccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 457899999999999999999876541 111 114799999988888877654 4455543
No 298
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.13 Score=57.85 Aligned_cols=48 Identities=27% Similarity=0.291 Sum_probs=35.9
Q ss_pred ccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCC
Q 038405 155 TVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF 205 (863)
Q Consensus 155 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F 205 (863)
+=|.++-+.++.+.+.- ...+=|..+|++|.|||++|+++++.. ...|
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF 496 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF 496 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe
Confidence 33577777777655521 345668899999999999999999987 4555
No 299
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.45 E-value=0.061 Score=54.81 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---------------
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW--------------- 237 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--------------- 237 (863)
.-+++.|+|.+|+|||++|.++..... ..=..++|++..+. ..++.+++ ++++......
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 457899999999999999999865541 22357889988655 34555443 3333221100
Q ss_pred ---cccChhhHHHHHHHHhcc-CcEEEEEcccc
Q 038405 238 ---NMKGEYDRAVEILISLRR-KKFVLLLDDVW 266 (863)
Q Consensus 238 ---~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 266 (863)
...+.++....+.+.++. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 012234555666666653 55578888875
No 300
>PRK08233 hypothetical protein; Provisional
Probab=95.43 E-value=0.011 Score=57.49 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|+|.|.+|+||||||+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998776
No 301
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.41 E-value=0.011 Score=46.99 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 302
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.39 E-value=0.07 Score=53.71 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=56.1
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCC-----CCCHHHHHHHHHHHcCCCcccc-----cccC
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSK-----EGNLEKIQEVIRKKLDISDYIW-----NMKG 241 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~~-----~~~~ 241 (863)
..-.++||+|-+|.||||+++.+..-. .... +.+++.-.+ .....+-..++++..+...... +-..
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~---~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLE---EPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCc---CCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 345789999999999999999998765 2233 333333211 1123344556666666543211 1112
Q ss_pred hhhHHHHHHHHhccCcEEEEEcccccc
Q 038405 242 EYDRAVEILISLRRKKFVLLLDDVWER 268 (863)
Q Consensus 242 ~~~~~~~l~~~l~~k~~LlVlDdv~~~ 268 (863)
.+.-.-.|.+.|.-+.-+||.|..-+.
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhh
Confidence 222223566778889999999986543
No 303
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.37 E-value=0.073 Score=54.34 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=59.1
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccc-cccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCcccc--c--ccCh-----
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFL-DVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIW--N--MKGE----- 242 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~--~--~~~~----- 242 (863)
-+-++|.|-.|+|||+|+..+.+... ..+++-+.++++-+++.. ...++..++.+.=....... . ....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 35689999999999999999887651 012335788999888764 45666666655422211100 0 1111
Q ss_pred -hhHHHHHHHHhc---cCcEEEEEcccccc
Q 038405 243 -YDRAVEILISLR---RKKFVLLLDDVWER 268 (863)
Q Consensus 243 -~~~~~~l~~~l~---~k~~LlVlDdv~~~ 268 (863)
...+..+.++++ ++++|+++||+-..
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 112234566663 68999999998653
No 304
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.36 E-value=0.013 Score=58.57 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998875
No 305
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.36 E-value=0.043 Score=53.28 Aligned_cols=118 Identities=20% Similarity=0.272 Sum_probs=63.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEE---eCCCCCHHHHH------HHHHHHcCCCccc---cc-c
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVA---VSKEGNLEKIQ------EVIRKKLDISDYI---WN-M 239 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~~~~~~~~~~~------~~i~~~l~~~~~~---~~-~ 239 (863)
.-.+++|+|..|.|||||++.++... ....+.+++. +. ..+..... .++++.++..... .. .
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 45689999999999999999998764 2233444432 21 11222211 1245555543211 01 1
Q ss_pred cChhhHHHHHHHHhccCcEEEEEcccccccc---cccccccCCC-CCC-CeEEEEeecchh
Q 038405 240 KGEYDRAVEILISLRRKKFVLLLDDVWERLD---LSKTGVSLSD-CQN-GSKIVFTTRSEE 295 (863)
Q Consensus 240 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~-~~~-gs~iivTTr~~~ 295 (863)
..-+...-.+.+.+-..+-++++|+.-..-+ ...+...+.. ... |..||++|.+..
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 1122233345566667888999999764322 2222222211 112 567888887643
No 306
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.35 E-value=0.035 Score=54.58 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=26.3
Q ss_pred HHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 165 VWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 165 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+..+..++-++..|.|.+|.||||+++.+....
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 3344434455789999999999999999988776
No 307
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.042 Score=55.94 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcccccc--CCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVN--HCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
-|+|.++|++|.|||+|.++++++. .++ +.|....-+.++.. .++..... . ..+-...+..+|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinsh----sLFSKWFs----E----SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSH----SLFSKWFS----E----SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehh----HHHHHHHh----h----hhhHHHHHHHHHHH
Confidence 4789999999999999999999987 332 33433334443322 22222221 1 12334556667777
Q ss_pred HhccCcEE--EEEccccc
Q 038405 252 SLRRKKFV--LLLDDVWE 267 (863)
Q Consensus 252 ~l~~k~~L--lVlDdv~~ 267 (863)
.+.++..| +.+|.|..
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 77665443 34588854
No 308
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.32 E-value=0.045 Score=56.42 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.0
Q ss_pred HHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 163 DEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 163 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++...++...+..+|.|+|.+|+|||||+..+.+..
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334455566789999999999999999999999876
No 309
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.32 E-value=0.086 Score=55.36 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (863)
.-+++-|+|..|+||||||.++.... ...-..++|+.....++... ++.+++..+.. +....++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 45799999999999999999988776 23346789999887776543 34455543221 223445555555
Q ss_pred HHHhcc-CcEEEEEcccccc
Q 038405 250 LISLRR-KKFVLLLDDVWER 268 (863)
Q Consensus 250 ~~~l~~-k~~LlVlDdv~~~ 268 (863)
.+.++. .--++|+|.|-..
T Consensus 124 e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-
T ss_pred HHHhhcccccEEEEecCccc
Confidence 555554 4458899998654
No 310
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.32 E-value=0.046 Score=49.59 Aligned_cols=99 Identities=18% Similarity=0.301 Sum_probs=43.7
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceeeccCCCccccchh-hhcccCccEE
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLNLSNTSIEELPSE-IMYLKNLKIL 597 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L 597 (863)
|++|+.+.+.. .+..++...|..++.|+.+.+.++ +..++. .+.++..|+++.+.+ .+..++.. +..+++|+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 45566665543 355555555666666666666553 333333 344555666666654 44444433 4446666666
Q ss_pred ecCCCCCccccchhhhcCCCCCceeecc
Q 038405 598 LLDGMRHFHLIPARVFSSLLSLKVFSLF 625 (863)
Q Consensus 598 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 625 (863)
.+..+ +..++...+.++ +|+.+.+.
T Consensus 87 ~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 87 DIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 66543 445555556565 66666554
No 311
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.31 E-value=0.036 Score=50.32 Aligned_cols=93 Identities=19% Similarity=0.305 Sum_probs=30.9
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceeeccCCCccccchh-hhcccCccEE
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLNLSNTSIEELPSE-IMYLKNLKIL 597 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L 597 (863)
|++|+.+.+..+ +..++...|..++.|+.+.+..+ +..++. .+..+.+|+.+++..+ +..++.. +.+. +|+.+
T Consensus 34 ~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 34 CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp -TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EE
T ss_pred cccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccccCcc-ccEEchhhhcCC-CceEE
Confidence 445555555442 44444444555555555555432 222222 2334555555555433 4444332 3343 55555
Q ss_pred ecCCCCCccccchhhhcCCCCC
Q 038405 598 LLDGMRHFHLIPARVFSSLLSL 619 (863)
Q Consensus 598 ~l~~~~~l~~lp~~~i~~L~~L 619 (863)
.+..+ +..++...|.++++|
T Consensus 109 ~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 109 NIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp E-TTB---SS----GGG-----
T ss_pred EECCC--ccEECCccccccccC
Confidence 54432 334444444444433
No 312
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.30 E-value=0.013 Score=58.33 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+...+|+|+|++|+||||||+.++...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998765
No 313
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.30 E-value=0.27 Score=52.96 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=32.6
Q ss_pred hhHHHHHHHhhcc---CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 159 DSKLDEVWGCIED---QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 159 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+...+.+.+.+.+ ....+|||.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455666777754 467899999999999999999998887
No 314
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.28 E-value=0.041 Score=53.34 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|.|..|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999998764
No 315
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.2 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
-+-|..+|++|.|||-||++||...
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhh
Confidence 3568899999999999999999886
No 316
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.26 E-value=0.053 Score=59.94 Aligned_cols=93 Identities=15% Similarity=0.248 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCcccc----cccC------
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIW----NMKG------ 241 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~------ 241 (863)
.-.-++|+|.+|+|||||+..+.+... +.+-+.++++-+++.. .+.++...+...-....... .+..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 345699999999999999999888762 2356788888777654 35566666654322211100 0111
Q ss_pred hhhHHHHHHHHh--c-cCcEEEEEccccc
Q 038405 242 EYDRAVEILISL--R-RKKFVLLLDDVWE 267 (863)
Q Consensus 242 ~~~~~~~l~~~l--~-~k~~LlVlDdv~~ 267 (863)
....+..+.+++ + ++++|+++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 112334556666 3 7999999999954
No 317
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.26 E-value=0.064 Score=55.12 Aligned_cols=92 Identities=17% Similarity=0.074 Sum_probs=57.5
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhh---HHHH
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYD---RAVE 248 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~~ 248 (863)
+.-+++=|+|+.|+||||+|.+++-.. ...-..++|++.-..++++.+..--...+..-. ..+..+.++ .+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~-v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL-VSQPDTGEQQLEIAEK 133 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhccee-EecCCCHHHHHHHHHH
Confidence 345789999999999999999987665 334448899999999998776543332121100 001222222 3333
Q ss_pred HHHHhccCcEEEEEccccc
Q 038405 249 ILISLRRKKFVLLLDDVWE 267 (863)
Q Consensus 249 l~~~l~~k~~LlVlDdv~~ 267 (863)
+......+--|+|+|.|-.
T Consensus 134 ~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 134 LARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHhccCCCCEEEEecCcc
Confidence 3333333567999999854
No 318
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.3 Score=47.89 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=39.5
Q ss_pred ccc-chhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC
Q 038405 154 KTV-GADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE 216 (863)
Q Consensus 154 ~~v-Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 216 (863)
++| |.+..+.+|.+.+.- .+.+=+.++|++|.|||-||++||++- .+-|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH
Confidence 345 467777777766521 344557899999999999999999875 3456677644
No 319
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.22 E-value=0.056 Score=59.17 Aligned_cols=91 Identities=21% Similarity=0.212 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc----cccCh------
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW----NMKGE------ 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~------ 242 (863)
.-..++|+|..|+|||||++.+.... . ....++...--+...+.++....+..-+...... .....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 44679999999999999999888764 1 2223332222333345555555544332221100 01111
Q ss_pred hhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 243 YDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 ~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
...+..+.+++ +++++||++||+-.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11233456666 47899999999854
No 320
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.20 E-value=0.071 Score=58.46 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc--ccc-cC------hh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI--WNM-KG------EY 243 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~-~~------~~ 243 (863)
.-..++|+|..|+|||||++.+.... .....++++.--+..++.++....+.......-. .+. .. ..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 34679999999999999999887654 2223444443334445554444333322110000 011 11 11
Q ss_pred hHHHHHHHHh--ccCcEEEEEccccc
Q 038405 244 DRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 244 ~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
..+..+.+++ +++.+|+++||+-.
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1223455555 47999999999854
No 321
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.19 E-value=0.048 Score=60.10 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=36.8
Q ss_pred cccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++||++.++.+...+..+ .-|.|.|.+|+|||++|+.+....
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 4789999999988887553 357899999999999999999865
No 322
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.16 E-value=0.096 Score=54.02 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=67.3
Q ss_pred HHHHHHhhc-cCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEE---eCCCCCHHHHHHHHHHHcC-CCccc
Q 038405 162 LDEVWGCIE-DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVA---VSKEGNLEKIQEVIRKKLD-ISDYI 236 (863)
Q Consensus 162 ~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~~~~~~~~~~~~~i~~~l~-~~~~~ 236 (863)
.+.++..+. .....-++|+|..|.|||||.+.++.... ...+.+++. +....... ++..... .+...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDERS----EIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhHH----HHHHHhccccccc
Confidence 344444443 34457899999999999999999997762 222333332 11111112 2322221 11110
Q ss_pred ----ccccChhhHHHHHHHHhc-cCcEEEEEcccccccccccccccCCCCCCCeEEEEeecchhh
Q 038405 237 ----WNMKGEYDRAVEILISLR-RKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEV 296 (863)
Q Consensus 237 ----~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~~v 296 (863)
.+..+....+..+...+. ..+=++++|.+-....+..+...+ ..|..||+||-+..+
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 011111222333444443 578899999997766565554443 247789999976543
No 323
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.18 Score=53.77 Aligned_cols=88 Identities=22% Similarity=0.164 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
+.++++|+|+.|+||||++..++.... .. -..+.+++..... ...+-++...+.++.+.. ...+..++...+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~- 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQ- 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHH-
Confidence 467999999999999999999887652 12 2356666654332 223445556666665432 2345555544443
Q ss_pred Hhc--cCcEEEEEcccc
Q 038405 252 SLR--RKKFVLLLDDVW 266 (863)
Q Consensus 252 ~l~--~k~~LlVlDdv~ 266 (863)
.++ +..=+|++|-.-
T Consensus 279 ~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 279 YMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHhcCCCCEEEEECCC
Confidence 333 334567778764
No 324
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.14 E-value=0.23 Score=52.91 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+.++|+.|+||||+|+.++...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999887764
No 325
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.14 E-value=0.099 Score=54.36 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....+|||.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998776544
No 326
>PRK04328 hypothetical protein; Provisional
Probab=95.13 E-value=0.061 Score=55.18 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=31.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE 216 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 216 (863)
.-.++.|.|.+|+|||+||.++.... ...-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 45789999999999999999876654 123456888887664
No 327
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.0028 Score=62.72 Aligned_cols=96 Identities=24% Similarity=0.283 Sum_probs=75.2
Q ss_pred ccceEEEeccCCccccCCCC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch--hhhcccccceeec
Q 038405 500 REDFRLSLWGSSIEYLPETP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA--EMGALINLRCLNL 576 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~--~i~~L~~L~~L~L 576 (863)
.+++.|++|++.+..+.... ++.|++|.|+-|.++.+.+ +..|++|+.|-|..| .|..+-+ .+.++++|+.|-|
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 36778899999888776665 8999999999999988876 789999999999999 6766643 3568999999999
Q ss_pred cCCC-ccccc-----hhhhcccCccEEe
Q 038405 577 SNTS-IEELP-----SEIMYLKNLKILL 598 (863)
Q Consensus 577 ~~~~-i~~lP-----~~i~~L~~L~~L~ 598 (863)
..|. ..+-+ ..+.-|++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 8872 22222 2356788888886
No 328
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.09 E-value=0.52 Score=47.28 Aligned_cols=198 Identities=13% Similarity=0.150 Sum_probs=106.5
Q ss_pred cccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcccc---ccCCCCEEEEEEeCCC----------C---
Q 038405 154 KTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLD---VNHCFDLVIFVAVSKE----------G--- 217 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~~~~----------~--- 217 (863)
...++++...++.+.....+.+-..++|++|.||-|.+..+.+.... .+-.-+..-|.+-+.. +
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35678888888887777677889999999999999977666554411 1112234444432222 0
Q ss_pred --------CHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcE-EEEEcccccc--cccccccccCCCCCCCeE
Q 038405 218 --------NLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKF-VLLLDDVWER--LDLSKTGVSLSDCQNGSK 286 (863)
Q Consensus 218 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~~~~~l~~~~~gs~ 286 (863)
.-+-+.+++++...-.... +.-..+.| ++|+-.+++- +.-..++.....-.+.+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qi--------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQI--------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcch--------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 1122334444433211100 00012334 3444444432 111122211112233455
Q ss_pred EEEeecch----------hhh--cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh-HHHHHHHHHHhCC
Q 038405 287 IVFTTRSE----------EVC--VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP-LALITIARAMSSR 353 (863)
Q Consensus 287 iivTTr~~----------~v~--l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l~~~ 353 (863)
+|+...+- -.. +..-+++|....++..+.......+ .+++.+|+++++|.- -|+-++ ..++-+
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllml-E~~~~~ 235 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLML-EAVRVN 235 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHH-HHHHhc
Confidence 55432221 111 7778999999999888765553332 789999999998864 343332 222211
Q ss_pred ----------CChhhHHHHHHHHhcC
Q 038405 354 ----------RSPREWQYVIDELQRN 369 (863)
Q Consensus 354 ----------~~~~~w~~~~~~l~~~ 369 (863)
-...+|+-++.++.+.
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHH
Confidence 2456899888776544
No 329
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.07 E-value=0.078 Score=51.83 Aligned_cols=45 Identities=22% Similarity=0.134 Sum_probs=31.0
Q ss_pred EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 225 (863)
++.|.|.+|+|||+||.++..... ..=..++|++...+ ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC--HHHHHHH
Confidence 367999999999999999877652 22245778876544 4444433
No 330
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.06 E-value=0.052 Score=52.16 Aligned_cols=113 Identities=13% Similarity=0.145 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccc--c---CCCC--EEEEEEeCCCCCHHHHHHHHHHHcCCCcc---c-ccccC
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDV--N---HCFD--LVIFVAVSKEGNLEKIQEVIRKKLDISDY---I-WNMKG 241 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~---~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~-~~~~~ 241 (863)
.-.+++|+|+.|+|||||.+.+..+.-.+ . ..|. .+.|+ .+ .+.++.++.... . ...-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 44689999999999999999886321111 0 0111 12232 21 355666665321 0 01111
Q ss_pred h-hhHHHHHHHHhccC--cEEEEEcccccccc---cccccccCCC-CCCCeEEEEeecchh
Q 038405 242 E-YDRAVEILISLRRK--KFVLLLDDVWERLD---LSKTGVSLSD-CQNGSKIVFTTRSEE 295 (863)
Q Consensus 242 ~-~~~~~~l~~~l~~k--~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~iivTTr~~~ 295 (863)
. +...-.+...+-.+ .=++++|+.-..-+ ...+...+.. ...|..||++|.+..
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 1 22223344555556 77888898754322 1222222211 124667888887743
No 331
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.06 E-value=0.016 Score=53.87 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998765
No 332
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.05 E-value=0.11 Score=55.58 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=41.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccc---cCCCCEEEEEEeCCCCCHHHHHHHHHHHcCC
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDV---NHCFDLVIFVAVSKEGNLEKIQEVIRKKLDI 232 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (863)
.-.++-|+|.+|+||||++.+++...... ...=..++||+....|+.+++. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 45788999999999999999987654110 0011379999998888877754 44555544
No 333
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.04 E-value=0.1 Score=54.16 Aligned_cols=90 Identities=23% Similarity=0.139 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH--HHHHHHHHHcCCCcccc-cccChhhHH-HH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE--KIQEVIRKKLDISDYIW-NMKGEYDRA-VE 248 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~-~~~~~~~~~-~~ 248 (863)
+.++|.++|++|+||||++..++.... ..-..+.+++.. .+... +-+....+..+.+.... ...++.... ..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 457999999999999999998887762 222355666544 33332 23344455555432100 112222222 23
Q ss_pred HHHHhccCcEEEEEcccc
Q 038405 249 ILISLRRKKFVLLLDDVW 266 (863)
Q Consensus 249 l~~~l~~k~~LlVlDdv~ 266 (863)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 333333444577788764
No 334
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.03 E-value=0.029 Score=53.41 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC--CCHHHHHHHHHHHcCCCcccccccChhhHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE--GNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEIL 250 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (863)
.-.+++|+|..|.|||||.+.++... ....+.+++.-..- .+..+. ....++.- ++-..-+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~---~qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMV---YQLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEE---EecCHHHHHHHHHH
Confidence 44689999999999999999998764 23344555432111 111111 11111110 11222223333455
Q ss_pred HHhccCcEEEEEcccccccc---cccccccCCC-CCCCeEEEEeecchh
Q 038405 251 ISLRRKKFVLLLDDVWERLD---LSKTGVSLSD-CQNGSKIVFTTRSEE 295 (863)
Q Consensus 251 ~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~iivTTr~~~ 295 (863)
+.+-.++-++++|+.-..-| ...+...+.. ...|..||++|.+..
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 56667778889998754322 1222222211 123567888887643
No 335
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.019 Score=54.59 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467889999999999999998876
No 336
>PRK06762 hypothetical protein; Provisional
Probab=94.98 E-value=0.017 Score=55.22 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998775
No 337
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.98 E-value=0.077 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|||.|.+|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 338
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.98 E-value=0.023 Score=52.79 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=27.0
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEE
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVA 212 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 212 (863)
.||-|.|.+|+||||||+++..+.. ..-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~---~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF---ARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH---HTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEec
Confidence 5899999999999999999999882 2334455554
No 339
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.98 E-value=0.069 Score=49.59 Aligned_cols=26 Identities=42% Similarity=0.592 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44789999999999999999998765
No 340
>PRK08149 ATP synthase SpaL; Validated
Probab=94.97 E-value=0.099 Score=57.21 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=54.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHcCCCcccc--c--ccC-----
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE-GNLEKIQEVIRKKLDISDYIW--N--MKG----- 241 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~--~--~~~----- 241 (863)
..-..++|+|..|+|||||+..++... .-+.+++..+... .++.++..+............ . +..
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 344679999999999999999988754 1234444444443 345566666655432211000 0 111
Q ss_pred -hhhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 242 -EYDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 242 -~~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
....+..+.+++ ++|++||++||+-.
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 112333455555 57999999999854
No 341
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.96 E-value=0.084 Score=53.10 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=67.1
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccC----------CC---CEEEEEEe----CCCC--CH---------------
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNH----------CF---DLVIFVAV----SKEG--NL--------------- 219 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------~F---~~~~wv~~----~~~~--~~--------------- 219 (863)
-..++|+|+.|.|||||.+.+..-....++ .+ ..+.||.= ...| ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 378999999999999999998873311000 01 24555531 1111 11
Q ss_pred -------HHHHHHHHHHcCCCccc---ccccChhhH-HHHHHHHhccCcEEEEEccccc------ccccccccccCCCCC
Q 038405 220 -------EKIQEVIRKKLDISDYI---WNMKGEYDR-AVEILISLRRKKFVLLLDDVWE------RLDLSKTGVSLSDCQ 282 (863)
Q Consensus 220 -------~~~~~~i~~~l~~~~~~---~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~------~~~~~~~~~~l~~~~ 282 (863)
.+...+.++..++.... ...-+-.+. .-.|.+.|..+.=|||||.--. .....++...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 13344455555543211 111122233 3356677889999999997432 22333343333332
Q ss_pred CCeEEEEeecchhh
Q 038405 283 NGSKIVFTTRSEEV 296 (863)
Q Consensus 283 ~gs~iivTTr~~~v 296 (863)
|.-|+++|-+-..
T Consensus 189 -g~tIl~vtHDL~~ 201 (254)
T COG1121 189 -GKTVLMVTHDLGL 201 (254)
T ss_pred -CCEEEEEeCCcHH
Confidence 8889999987553
No 342
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.96 E-value=0.13 Score=52.28 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE 216 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 216 (863)
.-.++.|.|.+|+||||+|.++..... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 457899999999999999998765441 22357788886443
No 343
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.95 E-value=0.11 Score=56.36 Aligned_cols=88 Identities=17% Similarity=0.105 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcccccc-CCCCEEEEEEeCCCCCHH--HHHHHHHHHcCCCcccccccChhhHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVN-HCFDLVIFVAVSKEGNLE--KIQEVIRKKLDISDYIWNMKGEYDRAVEIL 250 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (863)
.++|.++|..|+||||.+..++....... ..-..+..++.. ++... .-++...+.++.+.. ...+..+....+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 47899999999999999998887652111 122345556554 33332 235556666666532 2333444444343
Q ss_pred HHhccCcEEEEEcccc
Q 038405 251 ISLRRKKFVLLLDDVW 266 (863)
Q Consensus 251 ~~l~~k~~LlVlDdv~ 266 (863)
+ + .+.-++++|...
T Consensus 251 ~-~-~~~DlVLIDTaG 264 (388)
T PRK12723 251 Q-S-KDFDLVLVDTIG 264 (388)
T ss_pred H-h-CCCCEEEEcCCC
Confidence 3 2 345678889874
No 344
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.051 Score=52.27 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|..|.|||||.+.++.-.
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345689999999999999999998765
No 345
>PRK05922 type III secretion system ATPase; Validated
Probab=94.95 E-value=0.097 Score=57.33 Aligned_cols=91 Identities=15% Similarity=0.217 Sum_probs=52.1
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHcCCCcccc--cccC-------
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE-GNLEKIQEVIRKKLDISDYIW--NMKG------- 241 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~--~~~~------- 241 (863)
..-..++|+|..|+|||||.+.+.... . .+...++-+++. ..+...+.+............ ...+
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~----~-~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS----K-STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC----C-CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 344569999999999999999998764 1 233444434332 334445544444332221100 0111
Q ss_pred -hhhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 242 -EYDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 242 -~~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
....+..+.+++ +++++|+++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 111233455666 47999999999854
No 346
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.073 Score=57.84 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=34.8
Q ss_pred cccchhh---HHHHHHHhhccCC---------ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADS---KLDEVWGCIEDQS---------EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~---~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.-|-|+ ++++|+++|.++. .+=|.++|++|.|||-||++|+-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3447654 6777888887631 2447899999999999999999876
No 347
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.90 E-value=0.02 Score=56.16 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.++|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998664
No 348
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.89 E-value=0.075 Score=62.45 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=31.0
Q ss_pred cccchhhHHHHHHH---hhcc---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWG---CIED---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~---~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++.|.+...+++.+ ++.+ .-.+-|.++|++|.|||++|+.++...
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~ 209 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 209 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 45576665555544 3322 112348999999999999999998876
No 349
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.85 E-value=0.048 Score=55.20 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc-------------cc-
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI-------------WN- 238 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------~~- 238 (863)
.-.++.|.|.+|+|||++|.++...... . .=+.++|++..+++ .++.+.+. .++..... ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~-~-~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLK-N-FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH-H-HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhh-h-cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 4578999999999999999987655411 1 02467888876553 44444432 34322110 00
Q ss_pred ----ccChhhHHHHHHHHhcc-CcEEEEEccccc
Q 038405 239 ----MKGEYDRAVEILISLRR-KKFVLLLDDVWE 267 (863)
Q Consensus 239 ----~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 267 (863)
..+.+.....+.+.++. +...+|+|.+..
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 23455666666666654 557888888743
No 350
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.11 Score=55.20 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISL 253 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (863)
-.+|.|-|-+|||||||..+++.+.. ..- .++||+--+.. .++ +--++.++.+...... -.+...+.|.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~--~Qi-klRA~RL~~~~~~l~l-~aEt~~e~I~~~l 164 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESL--QQI-KLRADRLGLPTNNLYL-LAETNLEDIIAEL 164 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCH--HHH-HHHHHHhCCCccceEE-ehhcCHHHHHHHH
Confidence 47899999999999999999999872 222 67887655442 222 2234556644321111 1112223333333
Q ss_pred c-cCcEEEEEccccc
Q 038405 254 R-RKKFVLLLDDVWE 267 (863)
Q Consensus 254 ~-~k~~LlVlDdv~~ 267 (863)
. .+.-++|+|-+..
T Consensus 165 ~~~~p~lvVIDSIQT 179 (456)
T COG1066 165 EQEKPDLVVIDSIQT 179 (456)
T ss_pred HhcCCCEEEEeccce
Confidence 3 5888999999865
No 351
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.83 E-value=0.015 Score=51.56 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHhhhhhhccccccCCCC
Q 038405 177 IGLYGMGGVGKITLLKKPNNKFLDVNHCFD 206 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~ 206 (863)
|.|+|.+|+||||+|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 6799999999999999999876 55664
No 352
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.82 E-value=0.029 Score=53.93 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|.|.|.+|+||||+|+.+.++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 353
>PRK03839 putative kinase; Provisional
Probab=94.81 E-value=0.02 Score=55.72 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|.|+|++|+||||+|+.++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 354
>PTZ00494 tuzin-like protein; Provisional
Probab=94.80 E-value=1.1 Score=48.40 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=57.6
Q ss_pred ccccchhhHHHHHHHhhcc---CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIED---QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
..+|.|+.+-..+.+.|.. ...+++.+.|.-|.||++|.+....+. .+ ..++|.+... ++-++.|.++
T Consensus 371 ~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~~-----paV~VDVRg~---EDtLrsVVKA 441 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-GV-----ALVHVDVGGT---EDTLRSVVRA 441 (664)
T ss_pred ccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-CC-----CeEEEEecCC---cchHHHHHHH
Confidence 5688998887777777744 568999999999999999999887765 22 4678888765 5567888999
Q ss_pred cCCCc
Q 038405 230 LDISD 234 (863)
Q Consensus 230 l~~~~ 234 (863)
++.+.
T Consensus 442 LgV~n 446 (664)
T PTZ00494 442 LGVSN 446 (664)
T ss_pred hCCCC
Confidence 98875
No 355
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.80 E-value=0.046 Score=60.83 Aligned_cols=101 Identities=20% Similarity=0.123 Sum_probs=53.2
Q ss_pred HHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEE-EEEeCCCCC-HHHHHHHHHHHcCCC-cccc--c
Q 038405 165 VWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVI-FVAVSKEGN-LEKIQEVIRKKLDIS-DYIW--N 238 (863)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~-wv~~~~~~~-~~~~~~~i~~~l~~~-~~~~--~ 238 (863)
+++++.- ..-.-.+|+|.+|+|||||++.+++... ..+-+..+ .+-|.+-+. +..+.+.+-..+-.. .+.. .
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~ 483 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSD 483 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHH
Confidence 3444432 3345688999999999999999998652 22333333 444444432 333333321111000 0000 0
Q ss_pred ccChhhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 239 MKGEYDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 239 ~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
.......+..+.+++ .++.+||++|++-.
T Consensus 484 ~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 484 HTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 011222334455565 57999999999854
No 356
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.78 E-value=0.039 Score=50.76 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=28.9
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCC
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSK 215 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 215 (863)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999983 35566666666555
No 357
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.76 E-value=0.086 Score=50.37 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCC--CC---EEEEEEeCCCCCH--HHHHHHHHHHcCCCcccccccChhhH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHC--FD---LVIFVAVSKEGNL--EKIQEVIRKKLDISDYIWNMKGEYDR 245 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F~---~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 245 (863)
.-.+++|+|..|.|||||++.+........+. ++ .+.++ .+.+.. ..+...+.-. .. ..-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~--~~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WD--DVLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CC--CCCCHHHHH
Confidence 44689999999999999999998765211111 11 12222 222211 1222222210 10 012222333
Q ss_pred HHHHHHHhccCcEEEEEccccccccc---ccccccCCCCCCCeEEEEeecch
Q 038405 246 AVEILISLRRKKFVLLLDDVWERLDL---SKTGVSLSDCQNGSKIVFTTRSE 294 (863)
Q Consensus 246 ~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~l~~~~~gs~iivTTr~~ 294 (863)
.-.+.+.+-.++=++++|+.-..-+. ..+...+... +..||++|.+.
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~ 148 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRP 148 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCCh
Confidence 34455666677788899986543221 1222222111 35677777764
No 358
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.76 E-value=0.12 Score=55.15 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=42.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcccc---ccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCC
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLD---VNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDIS 233 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 233 (863)
...++-|+|.+|+|||+||..++-.... ....-..++|++....|..+++. +|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 4578899999999999999887743210 01122379999999999888764 556666543
No 359
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.75 E-value=0.097 Score=54.09 Aligned_cols=104 Identities=18% Similarity=0.206 Sum_probs=57.8
Q ss_pred cchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcc
Q 038405 156 VGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDY 235 (863)
Q Consensus 156 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 235 (863)
.|......+.+..+......+|.|.|..|+||||+++.+.+.. ...-..++.+.-...+....+ .++..
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~~-----~q~~v--- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPGI-----NQVQV--- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCCc-----eEEEe---
Confidence 3554444444444434455789999999999999999887654 111112333321111111100 01110
Q ss_pred cccccChhhHHHHHHHHhccCcEEEEEcccccccccc
Q 038405 236 IWNMKGEYDRAVEILISLRRKKFVLLLDDVWERLDLS 272 (863)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 272 (863)
...........++..|+...=.|+++++.+.+...
T Consensus 131 --~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 131 --NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred --CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 11111235566777788888899999998876544
No 360
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.75 E-value=0.023 Score=57.14 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHhhhhhhcc
Q 038405 177 IGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|.|+|++|+||||+|+.++...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998876
No 361
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.74 E-value=0.094 Score=49.49 Aligned_cols=26 Identities=35% Similarity=0.302 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-..+.++|++|.||||+.+.+|...
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 44678999999999999999999876
No 362
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.74 E-value=0.12 Score=51.20 Aligned_cols=89 Identities=22% Similarity=0.396 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCccc--c--cccChhh----
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYI--W--NMKGEYD---- 244 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~--~--~~~~~~~---- 244 (863)
-.-++|+|.+|+|||+|+..+.+.. . -+.++++.+++.. .+.++.+++...-...... . .......
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~---~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ---D--ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC---T--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc---c--ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 3568999999999999999999876 1 2455888887653 4555666554331111100 0 0111111
Q ss_pred --HHHHHHHHh--ccCcEEEEEccccc
Q 038405 245 --RAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 245 --~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
.+..+.+++ ++|.+|+++||+-.
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhHH
Confidence 122334444 58999999999843
No 363
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.72 E-value=0.044 Score=49.49 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=28.2
Q ss_pred HHHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 161 KLDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 161 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.+++-+.|.. ..-.+|.+.|.-|.||||+++.++...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 33444444432 344689999999999999999999876
No 364
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.69 E-value=0.093 Score=57.66 Aligned_cols=93 Identities=18% Similarity=0.330 Sum_probs=58.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC-HHHHHHHHHHHcCCCcccc----cccC------
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN-LEKIQEVIRKKLDISDYIW----NMKG------ 241 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~----~~~~------ 241 (863)
.-.-++|.|.+|+|||+|+..+..... +.+-+.++|+-+++... +.++.+++...-....... ....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 345689999999999999999887752 23347888888876643 5556666654322111000 0111
Q ss_pred hhhHHHHHHHHhc---cCcEEEEEccccc
Q 038405 242 EYDRAVEILISLR---RKKFVLLLDDVWE 267 (863)
Q Consensus 242 ~~~~~~~l~~~l~---~k~~LlVlDdv~~ 267 (863)
....+..+.++++ ++++|+++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1122345667764 5899999999854
No 365
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.66 E-value=0.1 Score=57.22 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=54.4
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC-HHHHHHHHHHHcCCCcccc----cccCh----
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN-LEKIQEVIRKKLDISDYIW----NMKGE---- 242 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~----~~~~~---- 242 (863)
..-..++|+|..|+|||||++.+++.. ..+.++++-+++... +.++....+..-+...... .+...
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 345678999999999999999998765 124556666665543 4455544444322211100 01111
Q ss_pred --hhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 243 --YDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 --~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
...+..+.+++ +++.+|+++||+-.
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 11223455666 47999999999854
No 366
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.66 E-value=0.11 Score=57.27 Aligned_cols=93 Identities=15% Similarity=0.256 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCcccc----cccCh-----
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIW----NMKGE----- 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~----- 242 (863)
.-.-++|.|.+|+|||||+..+..... ..+=+.++++-+++.. .+.++.+++...-....... .....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 345689999999999999998876652 1222467777776654 35666666665422211100 01111
Q ss_pred -hhHHHHHHHHh---ccCcEEEEEccccc
Q 038405 243 -YDRAVEILISL---RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 -~~~~~~l~~~l---~~k~~LlVlDdv~~ 267 (863)
...+..+.+++ +++++||++||+-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 12234566766 57999999999854
No 367
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.64 E-value=0.042 Score=54.06 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=28.5
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCC-------CEEEEEEeCCC
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCF-------DLVIFVAVSKE 216 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-------~~~~wv~~~~~ 216 (863)
.++.|+|.+|+||||++..+..........| ..++|++...+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 5789999999999999999887763211122 36778876655
No 368
>PRK14974 cell division protein FtsY; Provisional
Probab=94.64 E-value=0.21 Score=53.16 Aligned_cols=91 Identities=19% Similarity=0.139 Sum_probs=48.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH--HHHHHHHHHHcCCCcccc-cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL--EKIQEVIRKKLDISDYIW-NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 249 (863)
+..+|.++|+.|+||||++..++.... ...+ .++.+. .+.+.. .+-++...+.++.+.... ...+....+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 467999999999999998888887662 2223 333443 333332 233455666676543211 112222222222
Q ss_pred HHHhc-cCcEEEEEccccc
Q 038405 250 LISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 250 ~~~l~-~k~~LlVlDdv~~ 267 (863)
.+..+ ...=++++|-.-.
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 22221 2223888888743
No 369
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.63 E-value=0.063 Score=57.96 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=35.7
Q ss_pred ccccchhhHHHHHHHhhccC--------------CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQ--------------SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.++.+..+.-.+... ..+-|.++|++|+|||++|+.++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45778888888776555320 13578899999999999999999876
No 370
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.63 E-value=0.17 Score=53.50 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=53.0
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHcCCCcccc----cccC-----
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSK-EGNLEKIQEVIRKKLDISDYIW----NMKG----- 241 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~----~~~~----- 241 (863)
..-..++|+|..|.|||||.+.+.... . -+..+..-+.. ..++.++.......-+...... ....
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT---T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 344678999999999999999988765 1 23344444443 3455555555554432211100 0111
Q ss_pred -hhhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 242 -EYDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 242 -~~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
....+..+.+++ ++|.+|+++||+-.
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 111223445555 47999999999854
No 371
>PRK06217 hypothetical protein; Validated
Probab=94.62 E-value=0.046 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 372
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.051 Score=52.36 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRK 228 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (863)
..+|+|-||=|+||||||+.++++. . | ..++-.+.+++-+.....++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l---~--~-~~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL---G--F-KVFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh---C--C-ceeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999987 2 2 2344445556555555555544
No 373
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.60 E-value=0.08 Score=58.20 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=35.1
Q ss_pred ccccchhhHHHHHHHhhcc-------C---------CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED-------Q---------SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+||.+..++.+...+.+ . ..+.|.++|++|+|||++|+.++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999988877655411 0 13568999999999999999998765
No 374
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.58 E-value=0.21 Score=53.39 Aligned_cols=94 Identities=11% Similarity=0.027 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcccc---ccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc-------ccccCh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLD---VNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI-------WNMKGE 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 242 (863)
.-+++-|+|.+|+|||+|+.+++-.... ..+.-..++|++....|+.+++.+ +++.++..... ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 4578889999999999999987633200 112224789999999999888754 56666554211 012233
Q ss_pred hhHHH---HHHHHhc-cCcEEEEEccccc
Q 038405 243 YDRAV---EILISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 243 ~~~~~---~l~~~l~-~k~~LlVlDdv~~ 267 (863)
++... .+...+. .+--|||+|.+-.
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 33222 2222332 3455788888743
No 375
>PRK04040 adenylate kinase; Provisional
Probab=94.57 E-value=0.025 Score=55.15 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 376
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.55 E-value=0.15 Score=56.19 Aligned_cols=94 Identities=12% Similarity=0.054 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCChHHHHh-hhhhhcccc----ccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC-CCcccc----cccChh
Q 038405 174 EQTIGLYGMGGVGKITLL-KKPNNKFLD----VNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD-ISDYIW----NMKGEY 243 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~----~~~~~~ 243 (863)
-.-++|.|-.|+|||+|| -.+.+.... ..+.-+.++++-+++...-..-+.+.++.-+ ...... ......
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 356899999999999997 445554300 1124467889998887543332444444433 111100 011111
Q ss_pred h------HHHHHHHHh--ccCcEEEEEccccc
Q 038405 244 D------RAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 244 ~------~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
. .+..+.+++ +++.+|+|+||+-.
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 223445555 47999999999864
No 377
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.55 E-value=0.17 Score=53.77 Aligned_cols=60 Identities=10% Similarity=0.092 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcccc---ccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCC
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLD---VNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDIS 233 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 233 (863)
...++.|+|.+|+|||||+..++..... ....-..++|++....+...++ .++++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 4678999999999999999988753200 1112246799998888887764 4455555543
No 378
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.54 E-value=0.13 Score=56.37 Aligned_cols=91 Identities=20% Similarity=0.294 Sum_probs=55.3
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCcccc----cccChhh--
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIW----NMKGEYD-- 244 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~~~-- 244 (863)
..-..++|+|..|+|||||.+.+++.. .-+.++++-+++.. .+.++....+..-+...... .+.....
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 344679999999999999999998865 22567788777664 34454444333222111100 0111111
Q ss_pred ----HHHHHHHHh--ccCcEEEEEccccc
Q 038405 245 ----RAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 245 ----~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
.+..+.+++ ++|++|+++||+-.
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 123455655 57999999999854
No 379
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.54 E-value=0.017 Score=33.91 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=15.4
Q ss_pred CccEEeccCCcCccccchhhhc
Q 038405 546 ALKVLDLSYNLDLTQLPAEMGA 567 (863)
Q Consensus 546 ~L~~L~Ls~~~~i~~lp~~i~~ 567 (863)
+|++|||++| .++.+|.+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4778888888 67777776654
No 380
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.53 E-value=0.096 Score=56.79 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 381
>PRK14527 adenylate kinase; Provisional
Probab=94.52 E-value=0.044 Score=53.78 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|.|+|++|+||||+|+.++.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998776
No 382
>PRK00625 shikimate kinase; Provisional
Probab=94.52 E-value=0.026 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|.++||+|+||||+++.+..+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998876
No 383
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.52 E-value=0.022 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 384
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.052 Score=52.30 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998764
No 385
>PTZ00035 Rad51 protein; Provisional
Probab=94.47 E-value=0.31 Score=52.20 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcccc---ccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc-------ccccCh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLD---VNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI-------WNMKGE 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 242 (863)
.-.++.|+|.+|+|||||+..++-.... ....-..++|++....++.+++ .++++.++..... ....+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 4678999999999999999988754310 0112246779998877777764 3445555443210 011223
Q ss_pred hhHHHHH---HHHh-ccCcEEEEEccccc
Q 038405 243 YDRAVEI---LISL-RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 ~~~~~~l---~~~l-~~k~~LlVlDdv~~ 267 (863)
++....+ ...+ .++--|||+|.+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 3333322 2222 23456888888753
No 386
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.46 E-value=0.14 Score=56.64 Aligned_cols=86 Identities=21% Similarity=0.201 Sum_probs=48.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH--HHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL--EKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
.+++.++|++|+||||++..++... .....-..+..|+... +.. .+-+....+.++.+.. ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH
Confidence 3689999999999999998887765 1012224566676543 222 1223333444554432 22334444444433
Q ss_pred HhccCcEEEEEccc
Q 038405 252 SLRRKKFVLLLDDV 265 (863)
Q Consensus 252 ~l~~k~~LlVlDdv 265 (863)
+. ..=+||+|..
T Consensus 297 -~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 -LR-DCDVILIDTA 308 (424)
T ss_pred -hC-CCCEEEEeCC
Confidence 33 3457788865
No 387
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.45 E-value=0.023 Score=56.18 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|+|.|.+|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987764
No 388
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.44 E-value=0.14 Score=49.30 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|..|.|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345689999999999999999988754
No 389
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.43 E-value=0.13 Score=56.37 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=58.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccc-cCCCC---------EEEEEEeCCCCCHHHHHHHHHHHcC-CCcccc----
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDV-NHCFD---------LVIFVAVSKEGNLEKIQEVIRKKLD-ISDYIW---- 237 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~---- 237 (863)
.-+-++|.|-+|+|||||+..+.+..... ....| .++++-+++.....+.+...+..-+ ......
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 34568999999999999999988775100 00022 6778888887666666666665554 221100
Q ss_pred cccCh------hhHHHHHHHHhc---cCcEEEEEccccc
Q 038405 238 NMKGE------YDRAVEILISLR---RKKFVLLLDDVWE 267 (863)
Q Consensus 238 ~~~~~------~~~~~~l~~~l~---~k~~LlVlDdv~~ 267 (863)
..... ...+..+.++++ ++++|+++||+-.
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 01111 112334667765 5999999999854
No 390
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.41 E-value=0.061 Score=52.54 Aligned_cols=43 Identities=30% Similarity=0.482 Sum_probs=29.5
Q ss_pred EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
.|+|+|-||+||||+|..+...... ++.| .++-|....++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~-~~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS-KGGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh-cCCc-eEEEEeCCCCCChH
Confidence 6899999999999999986655522 2223 45556666666544
No 391
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.39 E-value=0.12 Score=52.79 Aligned_cols=90 Identities=13% Similarity=0.133 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCChHHHHh-hhhhhccccccCCCCEE-EEEEeCCCC-CHHHHHHHHHHHcCCCcccc----cccChhh--
Q 038405 174 EQTIGLYGMGGVGKITLL-KKPNNKFLDVNHCFDLV-IFVAVSKEG-NLEKIQEVIRKKLDISDYIW----NMKGEYD-- 244 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~~~-- 244 (863)
-+-++|+|..|+|||+|| ..+.+.. .-+.+ +++-+++.. .+.++.+.+.+.-....... .......
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 356899999999999996 5555432 12333 677776654 45566666654321111000 0111111
Q ss_pred ----HHHHHHHHh--ccCcEEEEEcccccc
Q 038405 245 ----RAVEILISL--RRKKFVLLLDDVWER 268 (863)
Q Consensus 245 ----~~~~l~~~l--~~k~~LlVlDdv~~~ 268 (863)
.+..+.+++ +++.+|+|+||+-..
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 123444544 479999999998653
No 392
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.37 E-value=0.14 Score=57.24 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (863)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++... ++.++...... ...+.+ .+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~----~i 148 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLE----AI 148 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHH----HH
Confidence 356899999999999999999988762 22246788876543 3333322 45555432111 112222 33
Q ss_pred HHHhc-cCcEEEEEccccc
Q 038405 250 LISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 250 ~~~l~-~k~~LlVlDdv~~ 267 (863)
.+.++ .+.-++|+|.+..
T Consensus 149 ~~~i~~~~~~lVVIDSIq~ 167 (446)
T PRK11823 149 LATIEEEKPDLVVIDSIQT 167 (446)
T ss_pred HHHHHhhCCCEEEEechhh
Confidence 33332 3556889998853
No 393
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.37 E-value=0.024 Score=49.53 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHhhhhhhcc
Q 038405 177 IGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988776
No 394
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.36 E-value=0.03 Score=54.16 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 395
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.36 E-value=0.099 Score=50.36 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|..|.|||||.+.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44689999999999999999998764
No 396
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.35 E-value=0.16 Score=47.40 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 397
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.33 E-value=0.05 Score=53.57 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.++||+|.+|+|||||++.+.--.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 345689999999999999999998765
No 398
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.32 E-value=0.15 Score=56.00 Aligned_cols=93 Identities=16% Similarity=0.264 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCcccc----cccCh-----
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIW----NMKGE----- 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~----- 242 (863)
.-.-++|.|.+|+|||||+..+..... ..+=+.++++-+++.. .+.++.+++...-....... .....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 345689999999999999999887651 2223467787776653 45666666654322111000 01111
Q ss_pred -hhHHHHHHHHh---ccCcEEEEEccccc
Q 038405 243 -YDRAVEILISL---RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 -~~~~~~l~~~l---~~k~~LlVlDdv~~ 267 (863)
...+..+.+++ +++++||++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 11234566776 45899999999954
No 399
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.31 E-value=0.051 Score=57.01 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=40.9
Q ss_pred ccccchhhHHHHHHHhhcc------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.++.++++++.+.. ..-+|+.++|+.|.||||||..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999953 457899999999999999999998776
No 400
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.31 E-value=0.026 Score=55.06 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
||.|+|++|+||||+|+.++.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998875
No 401
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.28 E-value=0.23 Score=50.21 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVI 226 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 226 (863)
...++.|.|.+|+||||+|.++..... +.. ..++|++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 346899999999999999876665441 111 4567776433 445555555
No 402
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.28 E-value=0.21 Score=51.64 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=31.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE 216 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 216 (863)
.-+++.|.|.+|+||||+|.+++.... ..-..++|++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecCC
Confidence 457899999999999999999876541 22346788887643
No 403
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.27 E-value=0.061 Score=61.60 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=38.3
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
++++|.+..++.+...+......-|.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999988876655566789999999999999999864
No 404
>PRK05973 replicative DNA helicase; Provisional
Probab=94.24 E-value=0.24 Score=49.81 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVI 226 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 226 (863)
.-.++.|.|.+|+|||++|.++..... ..-..++|++...+ ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 446899999999999999999877652 22345777766554 44554443
No 405
>PRK15453 phosphoribulokinase; Provisional
Probab=94.24 E-value=0.17 Score=51.77 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....+|+|.|.+|+||||+|+.+...+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998765
No 406
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.23 E-value=0.051 Score=48.83 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=38.8
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLR 254 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (863)
+-|.|.|.+|+||||+|.+++... . .-|+++|+-..-..+....=+.... ..-+.+.+.+.|-..+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~c-----~i~DEdkv~D~Le~~m~ 74 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYKC-----HILDEDKVLDELEPLMI 74 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhcccccccC-----ccccHHHHHHHHHHHHh
Confidence 458899999999999999998654 1 2466665442222222221111111 22355556666665554
Q ss_pred c
Q 038405 255 R 255 (863)
Q Consensus 255 ~ 255 (863)
+
T Consensus 75 ~ 75 (176)
T KOG3347|consen 75 E 75 (176)
T ss_pred c
Confidence 4
No 407
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.21 E-value=0.058 Score=55.93 Aligned_cols=89 Identities=24% Similarity=0.338 Sum_probs=47.7
Q ss_pred HHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCh
Q 038405 163 DEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGE 242 (863)
Q Consensus 163 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 242 (863)
..+++.+...+ +-+.++|+.|+|||++++....... ...| ...-++.+...+...+++.+-..+..... ..-.+
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~--~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~--~~~gP 96 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLD--SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG--RVYGP 96 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCST--TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT--EEEEE
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCC--cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC--CCCCC
Confidence 44555555544 4568999999999999999886651 1222 23445555544444443322111111000 00000
Q ss_pred hhHHHHHHHHhccCcEEEEEccccc
Q 038405 243 YDRAVEILISLRRKKFVLLLDDVWE 267 (863)
Q Consensus 243 ~~~~~~l~~~l~~k~~LlVlDdv~~ 267 (863)
-.+|+.++.+||+.-
T Consensus 97 ----------~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 97 ----------PGGKKLVLFIDDLNM 111 (272)
T ss_dssp ----------ESSSEEEEEEETTT-
T ss_pred ----------CCCcEEEEEecccCC
Confidence 136888999999853
No 408
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.21 E-value=0.16 Score=55.88 Aligned_cols=91 Identities=20% Similarity=0.255 Sum_probs=53.3
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCcccc--cc--cC-----
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIW--NM--KG----- 241 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~--~~--~~----- 241 (863)
..-..++|+|..|+|||||++.+.... ..+.+++..+.... ...++...+...-+...... .. ..
T Consensus 166 ~~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~ 240 (451)
T PRK05688 166 GRGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL 240 (451)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHH
Confidence 344679999999999999999987653 12344444454443 45555555554433221100 00 11
Q ss_pred -hhhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 242 -EYDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 242 -~~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
....+..+.+++ +++++||++||+-.
T Consensus 241 ~a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 241 RAAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 111223455665 57999999999854
No 409
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.21 E-value=0.036 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 410
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.20 E-value=0.076 Score=61.49 Aligned_cols=75 Identities=11% Similarity=0.156 Sum_probs=57.3
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDI 232 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (863)
+.++|.++.++.+...+... +.+.++|.+|+||||+|+.+..... ...++..+|..- ...+...+++.+...++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 56889999988888877654 4688999999999999999998762 344677788665 334677777788776654
No 411
>PRK05439 pantothenate kinase; Provisional
Probab=94.19 E-value=0.25 Score=51.79 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...-+|||.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999988755
No 412
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.16 E-value=0.24 Score=54.28 Aligned_cols=86 Identities=27% Similarity=0.296 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH--HHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL--EKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
..+|+++|..|+||||++..++... ......+.+..+... .+.+ .+-+....+.++.+.. ...+..+.... ..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d-~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~~a-l~ 265 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTD-SYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQLM-LH 265 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecC-CcchhHHHHHHHHHHHcCCcee--cCCCHHHHHHH-HH
Confidence 4789999999999999999887653 111222344444432 2332 2334455556665542 22333333322 22
Q ss_pred HhccCcEEEEEccc
Q 038405 252 SLRRKKFVLLLDDV 265 (863)
Q Consensus 252 ~l~~k~~LlVlDdv 265 (863)
.++++ -++++|-.
T Consensus 266 ~l~~~-d~VLIDTa 278 (420)
T PRK14721 266 ELRGK-HMVLIDTV 278 (420)
T ss_pred HhcCC-CEEEecCC
Confidence 34443 34556654
No 413
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.11 E-value=0.055 Score=54.89 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=43.1
Q ss_pred HHHHHhhc--cCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 038405 163 DEVWGCIE--DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 163 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 225 (863)
.+++..+. ..+..+|||.|.+|+|||||.-.+...+ ..+++=-.++=|.-|.+++-..++.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccccc
Confidence 44555553 3567799999999999999999888877 33344345666667777776555443
No 414
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.11 E-value=0.052 Score=54.30 Aligned_cols=62 Identities=19% Similarity=0.112 Sum_probs=37.1
Q ss_pred HHHHHHHhhc--cCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHH
Q 038405 161 KLDEVWGCIE--DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQ 223 (863)
Q Consensus 161 ~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 223 (863)
...++++.+. ..+..+|||.|++|+|||||+-.+....+ .+++=-.++=|.-|.+++-..++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCCCccc
Confidence 3445555553 24678999999999999999999888773 23332355556666666655543
No 415
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.10 E-value=0.096 Score=56.63 Aligned_cols=75 Identities=20% Similarity=0.257 Sum_probs=48.3
Q ss_pred ccccchhhHHHHHHHhhcc--------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCC---CEEEEEEeC-
Q 038405 153 EKTVGADSKLDEVWGCIED--------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF---DLVIFVAVS- 214 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~~- 214 (863)
..++|.++.+..+..++.. -..+-|.++|++|+|||++|+.+.... ...| +...|...+
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVGY 91 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh---CChheeecchhhccCCc
Confidence 4578999888888877732 013578999999999999999998876 2333 222232221
Q ss_pred CCCCHHHHHHHHHHHc
Q 038405 215 KEGNLEKIQEVIRKKL 230 (863)
Q Consensus 215 ~~~~~~~~~~~i~~~l 230 (863)
...+.+.+.+.+.+..
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 1235556666665543
No 416
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.06 E-value=0.038 Score=53.66 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++.|+|++|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999988765
No 417
>PRK06851 hypothetical protein; Provisional
Probab=94.05 E-value=0.53 Score=50.61 Aligned_cols=54 Identities=24% Similarity=0.243 Sum_probs=38.9
Q ss_pred chhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC
Q 038405 157 GADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE 216 (863)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 216 (863)
|.-...+.+. .+--+++.|.|.+|+|||||++.++.... ...++..++-|.+.+
T Consensus 201 G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 201 GAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred cHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 5444444444 33457899999999999999999999873 455666666665555
No 418
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.04 E-value=0.18 Score=56.47 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (863)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++.. -++.++...... ...+.+ .+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~----~I 162 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWE----QI 162 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHH----HH
Confidence 457899999999999999999977652 12235788876543 333322 133444332111 112222 33
Q ss_pred HHHhc-cCcEEEEEccccc
Q 038405 250 LISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 250 ~~~l~-~k~~LlVlDdv~~ 267 (863)
.+.++ .+.-++|+|.+..
T Consensus 163 ~~~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 163 CANIEEENPQACVIDSIQT 181 (454)
T ss_pred HHHHHhcCCcEEEEecchh
Confidence 33333 2556788888754
No 419
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.03 E-value=0.04 Score=50.65 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 420
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.01 E-value=0.045 Score=51.98 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 421
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.00 E-value=0.0035 Score=60.39 Aligned_cols=82 Identities=16% Similarity=0.062 Sum_probs=59.2
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEec
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
+...++|+++.|.+..+... |+.++.|.-||++.+ .+..+|..++.+..++.+++..|+.+.+|.+.+++++++++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 56677777777755555444 556667777777777 7777777777777777777777777777777777777777777
Q ss_pred CCCC
Q 038405 600 DGMR 603 (863)
Q Consensus 600 ~~~~ 603 (863)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 7765
No 422
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.11 Score=49.07 Aligned_cols=112 Identities=22% Similarity=0.308 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC--CHHHHHHHHHHHcCCCcccccccChhhHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG--NLEKIQEVIRKKLDISDYIWNMKGEYDRAVEIL 250 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (863)
.-.+++|+|..|.|||||++.+.... ......+++...... ..... ...++... +...-+...-.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~---qlS~G~~~r~~l~ 92 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP---QLSGGQRQRVALA 92 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHH----HhceEEEe---eCCHHHHHHHHHH
Confidence 34689999999999999999998765 223455554322111 11111 11111110 1111223333455
Q ss_pred HHhccCcEEEEEcccccccc---cccccccCCC-CCCCeEEEEeecchh
Q 038405 251 ISLRRKKFVLLLDDVWERLD---LSKTGVSLSD-CQNGSKIVFTTRSEE 295 (863)
Q Consensus 251 ~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~iivTTr~~~ 295 (863)
..+....=++++|+.-...| ...+...+.. ...+..+|++|.+..
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 56666778899999764322 1122221211 112456888887644
No 423
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.99 E-value=0.063 Score=52.31 Aligned_cols=37 Identities=32% Similarity=0.386 Sum_probs=30.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEe
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAV 213 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 213 (863)
.++|.|+|+.|+|||||++.+.... ...|..++..+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999887 567765555543
No 424
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.98 E-value=0.15 Score=54.25 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHhhhhhhcc
Q 038405 177 IGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.+.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999776
No 425
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.96 E-value=0.039 Score=51.22 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHhhhhh
Q 038405 176 TIGLYGMGGVGKITLLKKPN 195 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~ 195 (863)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 426
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.95 E-value=0.047 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|.|+|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999876
No 427
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.94 E-value=0.17 Score=59.39 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (863)
.-+++-|+|.+|+||||||.+++... ...-..++|+.....++. ..+++++...... ...+.++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 46788999999999999998866554 122356799988777764 3666776653211 223444555555
Q ss_pred HHHhc-cCcEEEEEccccc
Q 038405 250 LISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 250 ~~~l~-~k~~LlVlDdv~~ 267 (863)
...++ ++--|||+|.+..
T Consensus 131 ~~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHHhhcCCCeEEEEcchhh
Confidence 55554 3667899999863
No 428
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.94 E-value=0.031 Score=30.41 Aligned_cols=16 Identities=56% Similarity=0.895 Sum_probs=5.8
Q ss_pred ccceeeccCCCccccc
Q 038405 570 NLRCLNLSNTSIEELP 585 (863)
Q Consensus 570 ~L~~L~L~~~~i~~lP 585 (863)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555444443
No 429
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.93 E-value=0.089 Score=54.30 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=19.6
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.|.|+|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999887
No 430
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=93.92 E-value=0.18 Score=55.65 Aligned_cols=90 Identities=12% Similarity=0.191 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCChHHHHhhh-hhhccccccCCCCE-EEEEEeCCCC-CHHHHHHHHHHHcCCCcccc----cccCh-hh
Q 038405 173 SEQTIGLYGMGGVGKITLLKK-PNNKFLDVNHCFDL-VIFVAVSKEG-NLEKIQEVIRKKLDISDYIW----NMKGE-YD 244 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~-v~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~-~~ 244 (863)
.-.-++|.|-.|+||||||.. +.+.. .-+. ++++-+++.. .+.++.+.+.+.=....... ..... ..
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q~-----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r 214 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQK-----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQ 214 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhcc-----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHH
Confidence 345689999999999999654 44432 2243 4888887654 45666666654322111100 01111 11
Q ss_pred -----HHHHHHHHh--ccCcEEEEEccccc
Q 038405 245 -----RAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 245 -----~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
.+..+.+++ +++++|+|+||+-.
T Consensus 215 ~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr 244 (485)
T CHL00059 215 YLAPYTGAALAEYFMYRGRHTLIIYDDLSK 244 (485)
T ss_pred HHHHHHHhhHHHHHHHcCCCEEEEEcChhH
Confidence 122344554 47999999999864
No 431
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.91 E-value=0.2 Score=55.12 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=53.1
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc--cccC--h-----
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW--NMKG--E----- 242 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~--~----- 242 (863)
..-..++|.|..|+|||||++.++... .. -..+++..--+...+.++.+.+...-+...... ...+ .
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~---~~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT---QC-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CC-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 445789999999999999999998754 11 123443333334445555555554422221100 0111 1
Q ss_pred -hhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 243 -YDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 -~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
...+..+.+++ +++++|+++||+-.
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11223455665 47899999999854
No 432
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.90 E-value=0.042 Score=53.10 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998765
No 433
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.90 E-value=0.3 Score=55.45 Aligned_cols=89 Identities=17% Similarity=0.051 Sum_probs=55.7
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc-------------cc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI-------------WN 238 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------~~ 238 (863)
..-.++.|.|.+|+|||||+.++..... ..-+.++|++.-+. ..++.... +.++..... +.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~ 334 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPE 334 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccc
Confidence 3457899999999999999999888762 23356788776554 44444443 455543211 01
Q ss_pred ccChhhHHHHHHHHhcc-CcEEEEEcccc
Q 038405 239 MKGEYDRAVEILISLRR-KKFVLLLDDVW 266 (863)
Q Consensus 239 ~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 266 (863)
....++....+.+.+.. +.-.+|+|.+.
T Consensus 335 ~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 335 SAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred cCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 12335566666666644 44567888774
No 434
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.88 E-value=0.081 Score=55.74 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 225 (863)
.+++.+.|.||+||||+|.+.+-.. ......++-|+.....++..++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l---A~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL---AESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH---HHcCCcEEEEEeCCCCchHhhhcc
Confidence 4789999999999999999866655 222244777777666666655543
No 435
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.86 E-value=0.2 Score=50.74 Aligned_cols=78 Identities=12% Similarity=-0.095 Sum_probs=42.1
Q ss_pred EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC--CHHHHHHHHHHHc--CCCccc--ccccChhhHHHHH
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG--NLEKIQEVIRKKL--DISDYI--WNMKGEYDRAVEI 249 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l--~~~~~~--~~~~~~~~~~~~l 249 (863)
+|+|.|.+|+||||+|+.+...+. ..+ ..++.++...-+ +-......+.++. +..-+. ++..+.+.+...+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~-~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA-REG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH-hcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 589999999999999999887762 111 123444432222 2222222222221 111111 2455666677777
Q ss_pred HHHhccC
Q 038405 250 LISLRRK 256 (863)
Q Consensus 250 ~~~l~~k 256 (863)
+...+++
T Consensus 78 ~~L~~g~ 84 (277)
T cd02029 78 RTYGETG 84 (277)
T ss_pred HHHHcCC
Confidence 7666554
No 436
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.86 E-value=0.2 Score=55.80 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=46.5
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH--HHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL--EKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
.+|++++|+.|+||||++..++.... .+..-..+..+... .+.+ .+-++...+.++.+.. ...+..+....+ .
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~D-t~RigA~EQLr~~AeilGVpv~--~~~~~~Dl~~aL-~ 330 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV-MRHGASKVALLTTD-SYRIGGHEQLRIYGKILGVPVH--AVKDAADLRLAL-S 330 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCC-ccchhHHHHHHHHHHHhCCCee--ccCCchhHHHHH-H
Confidence 37999999999999999999887652 11111234555543 3332 2334444555555431 112222222222 2
Q ss_pred HhccCcEEEEEcccc
Q 038405 252 SLRRKKFVLLLDDVW 266 (863)
Q Consensus 252 ~l~~k~~LlVlDdv~ 266 (863)
.++++ -.+++|-.-
T Consensus 331 ~L~d~-d~VLIDTaG 344 (484)
T PRK06995 331 ELRNK-HIVLIDTIG 344 (484)
T ss_pred hccCC-CeEEeCCCC
Confidence 34444 366667653
No 437
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.84 E-value=0.037 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999765
No 438
>PRK13947 shikimate kinase; Provisional
Probab=93.83 E-value=0.042 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
-|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 439
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.82 E-value=0.045 Score=53.18 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998864
No 440
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.81 E-value=0.075 Score=49.70 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=29.6
Q ss_pred hHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 160 SKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 160 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.++++.+.+.+ +++.++|..|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 445667777755 789999999999999999998764
No 441
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.80 E-value=0.038 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 442
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.78 E-value=0.054 Score=53.96 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=27.6
Q ss_pred HhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 167 GCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 167 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.+.+.++++|+++|..|+|||||..++....
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556789999999999999999999998765
No 443
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.77 E-value=0.075 Score=50.65 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=32.4
Q ss_pred ccchhhHHHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 155 TVGADSKLDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 155 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+||....+.++++.+.. ....-|.|+|-.|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46888888888877743 222456699999999999999999865
No 444
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.70 E-value=0.25 Score=54.23 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=53.9
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc----cccC------
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW----NMKG------ 241 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~------ 241 (863)
..-..++|+|..|+|||||++.++... +. ...++...-.+...+.+..+..+..-+...... ....
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNA---KA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC---CC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 345678999999999999999988765 11 223333322333566666665555433221100 0111
Q ss_pred hhhHHHHHHHHh--ccCcEEEEEcccccc
Q 038405 242 EYDRAVEILISL--RRKKFVLLLDDVWER 268 (863)
Q Consensus 242 ~~~~~~~l~~~l--~~k~~LlVlDdv~~~ 268 (863)
....+..+.+++ ++++.||++||+-..
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 111223445555 479999999998653
No 445
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.69 E-value=0.075 Score=55.08 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=36.1
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE 216 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 216 (863)
+.-+++.|+|.+|+|||++|.++.... ......++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC
Confidence 456899999999999999999998887 345788999998776
No 446
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.68 E-value=0.16 Score=59.00 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=52.4
Q ss_pred CCccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHc
Q 038405 151 ATEKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKL 230 (863)
Q Consensus 151 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 230 (863)
..++++|.++.++.+...+.... -+.++|++|+||||+|+.+.+... ...|...+++.-.. .+...+++.+...+
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~~-~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNPE-DPNMPRIVEVPAGE 90 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCCC-CCchHHHHHHHHhh
Confidence 33668899998888887776643 455999999999999999998772 23344444433322 24455577777666
Q ss_pred CC
Q 038405 231 DI 232 (863)
Q Consensus 231 ~~ 232 (863)
+.
T Consensus 91 g~ 92 (608)
T TIGR00764 91 GR 92 (608)
T ss_pred ch
Confidence 54
No 447
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.65 E-value=0.2 Score=54.85 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=35.3
Q ss_pred ccccchhhHHHHHHHhhc-------c----C-------CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIE-------D----Q-------SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~-------~----~-------~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.++.++.+...+. . . ....|.++|++|+|||++|+.++...
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 456899998888766551 1 1 12568999999999999999998765
No 448
>PRK13949 shikimate kinase; Provisional
Probab=93.64 E-value=0.05 Score=52.03 Aligned_cols=23 Identities=39% Similarity=0.379 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
-|.|+|+.|+||||+++.++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 449
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.63 E-value=0.092 Score=56.03 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=38.6
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+||.++.+..+.-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4578999999888777777666778899999999999999987543
No 450
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.62 E-value=0.16 Score=60.70 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=37.2
Q ss_pred ccccchhhHHHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|+...+.++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3588999888888776643 334568899999999999999998865
No 451
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.11 Score=59.38 Aligned_cols=90 Identities=19% Similarity=0.147 Sum_probs=52.8
Q ss_pred ccchhhHHHHHHHhhc---c----------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHH
Q 038405 155 TVGADSKLDEVWGCIE---D----------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEK 221 (863)
Q Consensus 155 ~vGr~~~~~~l~~~L~---~----------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~ 221 (863)
..|.+...+.+.+.+. . ...+.+-++|++|.|||.||+++++.. ...|-.+.. .
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~----- 310 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S----- 310 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H-----
Confidence 4466666555554441 1 244578999999999999999999965 344433221 1
Q ss_pred HHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccc
Q 038405 222 IQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWE 267 (863)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 267 (863)
.+.... -..........+...-+.....|.+|.++.
T Consensus 311 ---~l~sk~-------vGesek~ir~~F~~A~~~~p~iiFiDEiDs 346 (494)
T COG0464 311 ---ELLSKW-------VGESEKNIRELFEKARKLAPSIIFIDEIDS 346 (494)
T ss_pred ---HHhccc-------cchHHHHHHHHHHHHHcCCCcEEEEEchhh
Confidence 111111 112222233333344457889999999975
No 452
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.60 E-value=0.41 Score=56.17 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC--HHHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN--LEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
.+||+++|+.|+||||.+..++.... ....-..+..++.. .+. ..+-++...+.++.+.. ...+..+....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~- 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV-AREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA- 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-
Confidence 47999999999999999988887651 11112345555543 333 34455666666766542 2334555443333
Q ss_pred HhccCcEEEEEcccc
Q 038405 252 SLRRKKFVLLLDDVW 266 (863)
Q Consensus 252 ~l~~k~~LlVlDdv~ 266 (863)
.++++. +|++|-.-
T Consensus 260 ~~~~~D-~VLIDTAG 273 (767)
T PRK14723 260 ALGDKH-LVLIDTVG 273 (767)
T ss_pred HhcCCC-EEEEeCCC
Confidence 444443 66777664
No 453
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.59 E-value=0.075 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|.|+|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 454
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.087 Score=51.94 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=32.6
Q ss_pred chhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 157 GADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 157 Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|=.+.++++.+...- +..+=|.++|++|.|||-+|++|+|+-
T Consensus 181 gckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 181 GCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred chHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 667777777765521 334557899999999999999999986
No 455
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.54 E-value=0.058 Score=53.69 Aligned_cols=26 Identities=35% Similarity=0.298 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|+|+|++|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 456
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.54 E-value=2.2 Score=44.79 Aligned_cols=157 Identities=12% Similarity=0.015 Sum_probs=82.0
Q ss_pred HHHHHHhhccCC-ceEEEEEcCCCChHHHHhhhhhhccc-------cccCCCCEEEEEEe-CCCCCHHHHHHHHHHHcCC
Q 038405 162 LDEVWGCIEDQS-EQTIGLYGMGGVGKITLLKKPNNKFL-------DVNHCFDLVIFVAV-SKEGNLEKIQEVIRKKLDI 232 (863)
Q Consensus 162 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~-------~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 232 (863)
++.+.+.+..+. ..+..++|..|.||+++|..+.+... ....+-+...++.. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 344555565544 45666999999999999998876641 01112112233321 1222333332 23333321
Q ss_pred CcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchh-hh-----------c
Q 038405 233 SDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEE-VC-----------V 298 (863)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~-v~-----------l 298 (863)
.. .-.+.+-++|+|++.... ....+...+.....++.+|++|.+.. +. +
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 11 001467788888886543 23344444444455677776665432 22 6
Q ss_pred ccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHH
Q 038405 299 ECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALIT 345 (863)
Q Consensus 299 ~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 345 (863)
.++++++..+.+... +. .++.+..++...+|.--|+..
T Consensus 147 ~~l~~~~l~~~l~~~-~~--------~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSK-NK--------EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHc-CC--------ChhHHHHHHHHcCCHHHHHHH
Confidence 677888877666543 10 134466666666663334443
No 457
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.52 E-value=0.24 Score=46.97 Aligned_cols=118 Identities=17% Similarity=0.114 Sum_probs=60.5
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC---CCHHHHHHHHH---HHcCCCcccccccChh----
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE---GNLEKIQEVIR---KKLDISDYIWNMKGEY---- 243 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~---~~l~~~~~~~~~~~~~---- 243 (863)
...|-|++-.|.||||.|..++-+.. ...+ .++.+.+-+. ..-...+.... .+.+.. ..+...+.+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g-~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTG-FTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCC-CeecCCCcHHHHH
Confidence 35778888899999999998887762 2222 3443333332 23333333320 001110 001111111
Q ss_pred ---hHHHHHHHHhcc-CcEEEEEccccccc-----ccccccccCCCCCCCeEEEEeecchh
Q 038405 244 ---DRAVEILISLRR-KKFVLLLDDVWERL-----DLSKTGVSLSDCQNGSKIVFTTRSEE 295 (863)
Q Consensus 244 ---~~~~~l~~~l~~-k~~LlVlDdv~~~~-----~~~~~~~~l~~~~~gs~iivTTr~~~ 295 (863)
+.....++.+.. +-=|+|||.+-... +.+++...+.....+..||+|-|+..
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 112233344433 45599999986432 22334444444455678999999853
No 458
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.49 E-value=0.25 Score=54.15 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=52.4
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCcccc----cccCh----
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIW----NMKGE---- 242 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~---- 242 (863)
..-..++|+|..|.|||||++.+.+.. . .+..+++.+.+.. .+.++.......=....... .....
T Consensus 135 ~~Gq~~~I~G~sG~GKTtLl~~I~~~~---~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~ 209 (411)
T TIGR03496 135 GRGQRMGIFAGSGVGKSTLLGMMARYT---E--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRL 209 (411)
T ss_pred ecCcEEEEECCCCCCHHHHHHHHhcCC---C--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHH
Confidence 344679999999999999999888754 1 2344455555543 34455554443321111000 01111
Q ss_pred --hhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 243 --YDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 --~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
...+..+.+++ +++++|+++||+-.
T Consensus 210 ~a~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 210 RAAFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 11223445555 57999999999854
No 459
>PRK14530 adenylate kinase; Provisional
Probab=93.49 E-value=0.052 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998776
No 460
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.48 E-value=0.23 Score=55.21 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCChHHHHhh-hhhhccccccCCCCE-EEEEEeCCCC-CHHHHHHHHHHHcCCCcccc----cccCh---
Q 038405 173 SEQTIGLYGMGGVGKITLLK-KPNNKFLDVNHCFDL-VIFVAVSKEG-NLEKIQEVIRKKLDISDYIW----NMKGE--- 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~--- 242 (863)
.-.-++|.|-.|+||||||. .+.+.. .-+. ++++-+++.. .+.++.+.+.+.=....... .....
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~-----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQK-----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhc-----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHH
Confidence 34568999999999999974 666653 2243 7888888764 45566666655422211100 01111
Q ss_pred ---hhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 243 ---YDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 ---~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
.-.+..+.+++ +++.+|||+||+-.
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 236 YIAPYAATSIGEHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcChhH
Confidence 11223455666 57999999999864
No 461
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.47 E-value=0.055 Score=53.97 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCChHHHHhhhhhh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNN 196 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~ 196 (863)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999998873
No 462
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.46 E-value=0.25 Score=54.70 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=50.3
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcc-c-c--cccC------
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDY-I-W--NMKG------ 241 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~-~--~~~~------ 241 (863)
..-..++|+|..|+|||||++.+.... .. -..++++.--+..++.++....+..-+.... . . ....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~---~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT---SA-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc---CC-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 456789999999999999999888764 11 1234443322333444443332211111000 0 0 0111
Q ss_pred hhhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 242 EYDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 242 ~~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
....+..+.+++ +++++||++||+-.
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 112233455665 47999999999854
No 463
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.46 E-value=0.25 Score=54.69 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=56.1
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCC--CEEEEEEeCCCC-CHHHHHHHHHHHcCCCcccc----cccC-----
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF--DLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIW----NMKG----- 241 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~----- 241 (863)
-.-++|.|-.|+|||||+..+.+.. ...+.+ ..++++-+++.. .+.++.+.+...=....... .+..
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 3568999999999999999988765 211111 156777776654 45566666654322211100 0111
Q ss_pred -hhhHHHHHHHHhc---cCcEEEEEccccc
Q 038405 242 -EYDRAVEILISLR---RKKFVLLLDDVWE 267 (863)
Q Consensus 242 -~~~~~~~l~~~l~---~k~~LlVlDdv~~ 267 (863)
....+..+.++++ ++++||++||+-.
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 1112334667765 6899999999854
No 464
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.40 E-value=0.064 Score=52.59 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 465
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.39 E-value=0.061 Score=48.02 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHhhhhhhcc
Q 038405 177 IGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998765
No 466
>PRK06820 type III secretion system ATPase; Validated
Probab=93.38 E-value=0.23 Score=54.65 Aligned_cols=90 Identities=22% Similarity=0.316 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC-HHHHHHHHHHHcCCCccc-c---cccCh-----
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN-LEKIQEVIRKKLDISDYI-W---NMKGE----- 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~-~---~~~~~----- 242 (863)
.-..++|+|..|+|||||++.++... +.+.+++..+.+... +.++.......=...... . .+...
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~-----~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~ 236 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADS-----AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLK 236 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccC-----CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHH
Confidence 34578999999999999999887654 234555555655522 222222222110000000 0 01111
Q ss_pred -hhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 243 -YDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 -~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
...+..+.+++ +++++||++||+-.
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 264 (440)
T PRK06820 237 GLSTATTIAEYFRDRGKKVLLMADSLTR 264 (440)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchhH
Confidence 11233455665 47999999999854
No 467
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.53 Score=46.51 Aligned_cols=52 Identities=25% Similarity=0.345 Sum_probs=38.4
Q ss_pred ccccCCcc---ccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 147 VDGMATEK---TVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 147 ~~~~~~~~---~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++.+|++. +=|.++.++++++.+.- ...+=+..+|++|.|||-+|++.+..-
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 34555543 44899999999988721 223447889999999999999988765
No 468
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.33 E-value=0.14 Score=50.45 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|+|.|+.|+||||+++.++...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 469
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.31 E-value=0.39 Score=51.00 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|+++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 470
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.31 E-value=0.38 Score=50.20 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
-.++.|.|.+|+||||++.+++.... ..+=..++|++...+ ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 46888999999999999999887652 222346888876553 45555555443
No 471
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=93.29 E-value=0.39 Score=53.02 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=52.0
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHcCCCcccc--c--ccCh----
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSK-EGNLEKIQEVIRKKLDISDYIW--N--MKGE---- 242 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~--~--~~~~---- 242 (863)
..-..++|+|..|+|||||.+.+.... . .+...++.+.. ...+.+...+....-....... . ....
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~---~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~ 217 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGA---S--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERL 217 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHH
Confidence 445678999999999999999988765 1 23344444444 3445555544443321111000 0 1111
Q ss_pred --hhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 243 --YDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 --~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
...+..+.+++ +++++|+++|++-.
T Consensus 218 ~~~~~a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 218 KAAYTATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCchH
Confidence 11223445555 46899999999854
No 472
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.26 E-value=0.24 Score=43.92 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=31.8
Q ss_pred cccchhhHHHHHHHhh----cc---CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCI----ED---QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L----~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|-.-..+.+++.+ .+ ...-|++..|.+|+|||.+|+.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3556655555555555 32 345689999999999999888877763
No 473
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.26 E-value=0.071 Score=45.98 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPN 195 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~ 195 (863)
.-..++|+|.+|.|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34679999999999999999976
No 474
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.24 E-value=0.31 Score=54.04 Aligned_cols=93 Identities=20% Similarity=0.322 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCc--------c-cccccCh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISD--------Y-IWNMKGE 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~--------~-~~~~~~~ 242 (863)
.-.-++|.|-.|+|||||+..+..... +.+=+.++++-+++.. .+.++...+...-.... . .....+.
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~--~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 237 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHH--HhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence 345689999999999999998887631 1222678888887764 35666666655211110 0 0001111
Q ss_pred --------hhHHHHHHHHhc--cC-cEEEEEccccc
Q 038405 243 --------YDRAVEILISLR--RK-KFVLLLDDVWE 267 (863)
Q Consensus 243 --------~~~~~~l~~~l~--~k-~~LlVlDdv~~ 267 (863)
...+..+.++++ ++ ++||++||+-.
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 123345677774 34 99999999854
No 475
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.24 E-value=0.057 Score=50.82 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHhhhhhhcc
Q 038405 177 IGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 476
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.22 E-value=0.082 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
||+|+|+.|+|||||+..+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 477
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.22 E-value=0.09 Score=56.09 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=40.4
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+||-++.+..+...+.++...-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 5679999999999988888888778899999999999999997654
No 478
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.21 E-value=0.089 Score=55.58 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=30.8
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHH
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQ 223 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 223 (863)
++|.+.|-||+||||+|.+.+-... .++ ..++-++.....++..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A-~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALA-RRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH-HTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHh-hCC--CCeeEeecCCCccHHHHh
Confidence 6899999999999999988776652 122 345666655554444443
No 479
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.20 E-value=0.67 Score=49.75 Aligned_cols=73 Identities=18% Similarity=0.129 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCChHHH-HhhhhhhccccccCCCCEEEEEEeCCCCCHH--HHHHHHHHHcCCCcccccccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKIT-LLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE--KIQEVIRKKLDISDYIWNMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 249 (863)
+-++|.++|+.|+|||| ||+..+.-. ....=..+..++.. ++.+. +-++.-++-++.+.. ...+..++...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~--~~~~~~kVaiITtD-tYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV--MLKKKKKVAIITTD-TYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH--hhccCcceEEEEec-cchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHH
Confidence 47999999999999995 565544332 11222356666653 33332 334455566666642 244555555544
Q ss_pred H
Q 038405 250 L 250 (863)
Q Consensus 250 ~ 250 (863)
.
T Consensus 277 ~ 277 (407)
T COG1419 277 E 277 (407)
T ss_pred H
Confidence 4
No 480
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.20 E-value=0.051 Score=51.77 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHhhhhhhcc
Q 038405 177 IGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998775
No 481
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.19 E-value=0.068 Score=49.16 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+++.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999988765543
No 482
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.19 E-value=0.065 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 483
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.15 E-value=0.077 Score=52.43 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....+|+|+|.+|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455799999999999999999998865
No 484
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.14 E-value=0.1 Score=55.57 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=36.9
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.+..++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4678999999887765554555568999999999999999986543
No 485
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.12 E-value=0.23 Score=54.58 Aligned_cols=91 Identities=21% Similarity=0.214 Sum_probs=53.0
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHcCCCccc--c--cccCh----
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE-GNLEKIQEVIRKKLDISDYI--W--NMKGE---- 242 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~--~--~~~~~---- 242 (863)
..-..++|+|..|+|||||++.+.+.. ..+..+++.+++. ..+.+...+..+.=...... . .....
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 445689999999999999999988754 2344555555543 34445555543311111000 0 01111
Q ss_pred --hhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 243 --YDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 --~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
...+..+.+++ +++++||++||+-.
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 11233455666 47899999999954
No 486
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.11 E-value=0.091 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHhhhhhhcc
Q 038405 177 IGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|.|+|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998765
No 487
>PLN02348 phosphoribulokinase
Probab=93.10 E-value=0.1 Score=55.91 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+...+|||.|.+|+||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 566899999999999999999999876
No 488
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.10 E-value=0.11 Score=58.91 Aligned_cols=55 Identities=22% Similarity=0.377 Sum_probs=42.3
Q ss_pred ccccchhhHHHHHHHhhcc-----CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEE
Q 038405 153 EKTVGADSKLDEVWGCIED-----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVA 212 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 212 (863)
++++--.+.++++..||.+ ...+++.+.|++|+||||.++.+++.. .|+.+=|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 3455566778889999954 335799999999999999999999875 356666754
No 489
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.10 E-value=0.076 Score=51.01 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...|.|+|+.|+||||+|+.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3469999999999999999999875
No 490
>PRK13948 shikimate kinase; Provisional
Probab=93.06 E-value=0.081 Score=51.07 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+.|.++|+.|+||||+++.+....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45779999999999999999999876
No 491
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.086 Score=61.39 Aligned_cols=98 Identities=17% Similarity=0.303 Sum_probs=59.6
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCC-----CEEEEEEeCCCCCHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF-----DLVIFVAVSKEGNLEKIQEVIR 227 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-----~~~~wv~~~~~~~~~~~~~~i~ 227 (863)
++.+||++++.++++.|....-.=-.++|-+|+|||++|.-++.+.. .+.- +..++. .|+..+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~s-----LD~g~L----- 237 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYS-----LDLGSL----- 237 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEE-----ecHHHH-----
Confidence 55789999999999999542222234689999999998887777651 1111 111110 011111
Q ss_pred HHcCCCcccccccChhhHHHHHHHHhc-cCcEEEEEccccc
Q 038405 228 KKLDISDYIWNMKGEYDRAVEILISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~ 267 (863)
..... -..+.+++.+.+.+.++ .++..|++|.+..
T Consensus 238 --vAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHt 273 (786)
T COG0542 238 --VAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHT 273 (786)
T ss_pred --hcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 11111 13456666666666665 4589999999865
No 492
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=93.04 E-value=0.28 Score=54.28 Aligned_cols=91 Identities=21% Similarity=0.245 Sum_probs=49.7
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHcCCCcccc----cccCh----
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE-GNLEKIQEVIRKKLDISDYIW----NMKGE---- 242 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~---- 242 (863)
..-..++|+|..|+|||||++.+.... . . +..+...+... ..+.++.......-+...... ....+
T Consensus 161 ~~Gq~~~I~G~sG~GKStLl~~I~~~~---~-~-~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~ 235 (440)
T TIGR01026 161 GKGQRIGIFAGSGVGKSTLLGMIARNT---E-A-DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRL 235 (440)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC---C-C-CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHH
Confidence 344678999999999999999888764 1 1 23333444433 234444444333211111000 01111
Q ss_pred --hhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 243 --YDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 243 --~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
...+..+.+++ +++++|+++||+-.
T Consensus 236 ~~~~~a~t~AE~frd~G~~Vll~~DslTr 264 (440)
T TIGR01026 236 KGAYVATAIAEYFRDQGKDVLLLMDSVTR 264 (440)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 11222344555 57899999999854
No 493
>PRK13975 thymidylate kinase; Provisional
Probab=93.01 E-value=0.071 Score=52.62 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..|.|.|+.|+||||+|+.++...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999887
No 494
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.01 E-value=0.32 Score=46.80 Aligned_cols=119 Identities=16% Similarity=0.070 Sum_probs=63.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC---CHHHHHHHHH--HH--cCCCcccccccChhh-
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG---NLEKIQEVIR--KK--LDISDYIWNMKGEYD- 244 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~---~~~~~~~~i~--~~--l~~~~~~~~~~~~~~- 244 (863)
....|-|+|-.|-||||.|..++-+. ..+=..+..+.+-+.. .-...+..+- .. .+.. ..+...+.++
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~-~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTG-FTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCC-CcccCCCcHHH
Confidence 34688999999999999999888775 2232345555544432 3333333220 00 0111 0011111111
Q ss_pred ------HHHHHHHHhc-cCcEEEEEccccccc-----ccccccccCCCCCCCeEEEEeecchh
Q 038405 245 ------RAVEILISLR-RKKFVLLLDDVWERL-----DLSKTGVSLSDCQNGSKIVFTTRSEE 295 (863)
Q Consensus 245 ------~~~~l~~~l~-~k~~LlVlDdv~~~~-----~~~~~~~~l~~~~~gs~iivTTr~~~ 295 (863)
.....++.+. ++-=|+|||.+-... +.+++...+.....+..||+|=|+..
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1223334443 455699999986432 23344444444455678999999753
No 495
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.01 E-value=0.086 Score=52.39 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...|.++||+|+||||..+.++.+.
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHH
Confidence 4578899999999999999999877
No 496
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.99 E-value=0.21 Score=49.61 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....|+|+|.+|+|||||...+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 45689999999999999999888763
No 497
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=92.97 E-value=0.24 Score=54.43 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=49.3
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHcCCCcc-cc---cccChh---
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE-GNLEKIQEVIRKKLDISDY-IW---NMKGEY--- 243 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-~~---~~~~~~--- 243 (863)
..-..++|+|..|+|||||++.+.... . .+.++...+... .++.++.+.+...-..... .+ .+....
T Consensus 173 ~~Gqri~I~G~sG~GKTTLL~~Ia~~~---~--~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~ 247 (455)
T PRK07960 173 GRGQRMGLFAGSGVGKSVLLGMMARYT---Q--ADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRM 247 (455)
T ss_pred cCCcEEEEECCCCCCccHHHHHHhCCC---C--CCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHH
Confidence 345679999999999999999888754 1 123333333322 2344444444322111100 00 111111
Q ss_pred ---hHHHHHHHHh--ccCcEEEEEccccc
Q 038405 244 ---DRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 244 ---~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
..+..+.+++ +++++|+++||+-.
T Consensus 248 ~~~~~a~tiAEyfrd~G~~Vll~~DslTr 276 (455)
T PRK07960 248 QGAAYATRIAEDFRDRGQHVLLIMDSLTR 276 (455)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEecchhH
Confidence 1223345555 47999999999854
No 498
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.95 E-value=0.093 Score=49.98 Aligned_cols=22 Identities=50% Similarity=0.575 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHhhhhhhcc
Q 038405 177 IGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|.|.|.+|+|||||++.++...
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999998876
No 499
>PRK13946 shikimate kinase; Provisional
Probab=92.95 E-value=0.078 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.|.++|+.|+||||+++.++...
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999886
No 500
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.64 Score=52.85 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=33.8
Q ss_pred ccccchhhHHHH---HHHhhccCC---------ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDE---VWGCIEDQS---------EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+..|.|+.+++ +++.|.++. .+=+..+|++|.|||.||++++...
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 345688776555 555665522 2347899999999999999999887
Done!