Query 038405
Match_columns 863
No_of_seqs 583 out of 4375
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 18:31:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.3E-45 4.3E-50 424.6 22.1 301 156-478 131-469 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.3E-38 4.5E-43 367.6 17.6 277 154-474 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 3E-37 1E-41 394.3 22.3 303 150-478 121-450 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.8E-34 9.5E-39 335.8 23.7 298 152-477 123-449 (591)
5 4fmz_A Internalin; leucine ric 99.9 1.6E-23 5.4E-28 227.8 19.9 286 497-822 41-327 (347)
6 3vq2_A TLR4, TOLL-like recepto 99.9 9.5E-24 3.2E-28 248.0 15.6 132 500-633 32-169 (606)
7 3o6n_A APL1; leucine-rich repe 99.9 2.6E-23 8.9E-28 229.9 17.1 287 498-823 43-335 (390)
8 4ecn_A Leucine-rich repeat pro 99.9 1.6E-22 5.4E-27 241.3 22.0 332 496-846 444-843 (876)
9 2id5_A Lingo-1, leucine rich r 99.9 2.9E-22 9.8E-27 227.9 22.5 292 504-823 15-313 (477)
10 3o6n_A APL1; leucine-rich repe 99.9 1.4E-22 4.7E-27 224.1 18.9 267 520-823 44-312 (390)
11 2z7x_B TOLL-like receptor 1, v 99.9 3E-22 1E-26 230.5 22.1 325 500-837 21-475 (520)
12 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-22 7.1E-27 217.3 19.3 290 501-816 34-331 (332)
13 3oja_B Anopheles plasmodium-re 99.9 8.6E-23 2.9E-27 238.3 17.5 293 499-815 50-355 (597)
14 3bz5_A Internalin-J, INLJ; leu 99.9 9.5E-23 3.3E-27 228.8 16.9 290 500-827 42-350 (457)
15 4eco_A Uncharacterized protein 99.9 2.1E-22 7E-27 236.5 18.9 335 496-847 202-604 (636)
16 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.3E-22 1.8E-26 230.4 22.1 137 696-836 350-503 (562)
17 3v47_A TOLL-like receptor 5B a 99.9 8E-22 2.7E-26 222.9 22.4 322 500-836 30-401 (455)
18 3t6q_A CD180 antigen; protein- 99.9 3.1E-22 1.1E-26 235.0 19.1 103 501-603 34-140 (606)
19 2z63_A TOLL-like receptor 4, v 99.9 4.4E-22 1.5E-26 232.0 20.2 134 695-840 392-528 (570)
20 3t6q_A CD180 antigen; protein- 99.9 5.2E-22 1.8E-26 233.1 20.2 137 496-634 53-196 (606)
21 3v47_A TOLL-like receptor 5B a 99.9 3.7E-22 1.3E-26 225.6 18.2 322 504-837 14-378 (455)
22 1xku_A Decorin; proteoglycan, 99.9 1.4E-21 4.8E-26 210.7 21.0 268 501-792 32-304 (330)
23 1o6v_A Internalin A; bacterial 99.9 9.2E-22 3.2E-26 222.7 19.8 287 496-815 64-363 (466)
24 3oja_B Anopheles plasmodium-re 99.9 5.8E-22 2E-26 231.3 18.4 294 520-837 50-352 (597)
25 2z63_A TOLL-like receptor 4, v 99.9 1.7E-22 5.7E-27 235.6 13.5 130 500-631 28-163 (570)
26 2z81_A CD282 antigen, TOLL-lik 99.9 4.6E-22 1.6E-26 230.7 17.1 132 500-632 26-163 (549)
27 2id5_A Lingo-1, leucine rich r 99.9 9.1E-22 3.1E-26 223.8 19.0 290 500-815 32-330 (477)
28 4ecn_A Leucine-rich repeat pro 99.9 1.7E-22 5.9E-27 241.0 13.1 289 510-814 435-785 (876)
29 3j0a_A TOLL-like receptor 5; m 99.9 1.8E-21 6.2E-26 236.4 22.0 259 498-759 22-349 (844)
30 3vq2_A TLR4, TOLL-like recepto 99.9 7.2E-22 2.5E-26 231.9 17.7 121 496-618 52-178 (606)
31 3rgz_A Protein brassinosteroid 99.9 3E-22 1E-26 240.7 14.6 266 498-766 267-556 (768)
32 3rgz_A Protein brassinosteroid 99.9 6.2E-22 2.1E-26 238.0 17.1 87 544-630 268-356 (768)
33 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-21 4E-26 233.4 19.2 255 500-758 25-306 (680)
34 4eco_A Uncharacterized protein 99.9 8.9E-22 3E-26 231.1 15.3 285 512-813 195-544 (636)
35 4fmz_A Internalin; leucine ric 99.9 2.2E-21 7.4E-26 210.9 17.1 256 520-816 43-298 (347)
36 1o6v_A Internalin A; bacterial 99.9 6.3E-21 2.1E-25 215.8 20.0 295 496-824 86-393 (466)
37 1ziw_A TOLL-like receptor 3; i 99.9 2.2E-21 7.5E-26 231.0 16.9 234 496-735 45-306 (680)
38 4fcg_A Uncharacterized protein 99.9 4.2E-21 1.4E-25 206.0 16.1 105 520-627 80-193 (328)
39 2z81_A CD282 antigen, TOLL-lik 99.8 3.1E-21 1.1E-25 223.7 14.5 145 505-652 10-159 (549)
40 4fcg_A Uncharacterized protein 99.8 1E-20 3.5E-25 203.0 17.4 239 543-846 79-317 (328)
41 3bz5_A Internalin-J, INLJ; leu 99.8 1.1E-20 3.9E-25 212.0 18.1 281 520-828 41-330 (457)
42 1ogq_A PGIP-2, polygalacturona 99.8 4.8E-21 1.7E-25 204.3 12.6 242 501-795 51-305 (313)
43 2z7x_B TOLL-like receptor 1, v 99.8 4.1E-20 1.4E-24 212.6 19.6 308 496-815 41-478 (520)
44 3j0a_A TOLL-like receptor 5; m 99.8 3.9E-20 1.3E-24 224.7 20.2 300 503-815 7-372 (844)
45 1ogq_A PGIP-2, polygalacturona 99.8 2.7E-20 9.1E-25 198.6 16.3 253 521-824 50-310 (313)
46 2z66_A Variable lymphocyte rec 99.8 4.1E-20 1.4E-24 196.9 16.2 239 504-791 11-258 (306)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 6.9E-20 2.3E-24 212.6 17.7 141 674-815 350-507 (562)
48 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-20 3.9E-25 202.0 8.6 267 520-819 33-300 (317)
49 3zyi_A Leucine-rich repeat-con 99.8 2E-19 6.8E-24 202.6 19.0 239 503-759 57-301 (452)
50 3zyj_A Leucine-rich repeat-con 99.8 2.3E-19 7.8E-24 201.4 19.3 239 503-759 46-290 (440)
51 2z80_A TOLL-like receptor 2, v 99.8 1.3E-19 4.6E-24 197.0 15.7 122 505-628 36-160 (353)
52 3g06_A SSPH2 (leucine-rich rep 99.8 7.9E-19 2.7E-23 202.7 22.0 255 501-816 41-295 (622)
53 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-18 3.9E-23 183.6 19.0 219 503-761 14-238 (285)
54 4g8a_A TOLL-like receptor 4; l 99.8 1E-18 3.5E-23 206.4 19.8 129 500-630 52-186 (635)
55 2ft3_A Biglycan; proteoglycan, 99.8 2.6E-18 9.1E-23 185.1 19.6 263 500-792 54-331 (332)
56 1xku_A Decorin; proteoglycan, 99.8 1E-17 3.6E-22 180.3 23.4 240 500-760 52-305 (330)
57 3zyj_A Leucine-rich repeat-con 99.8 5.5E-18 1.9E-22 190.1 18.7 243 522-792 44-290 (440)
58 2z80_A TOLL-like receptor 2, v 99.8 6.2E-19 2.1E-23 191.8 10.2 246 500-791 52-311 (353)
59 3oja_A Leucine-rich immune mol 99.8 8.1E-19 2.8E-23 198.7 11.2 218 520-761 33-250 (487)
60 4g8a_A TOLL-like receptor 4; l 99.8 2.6E-18 9E-23 202.8 14.8 127 504-632 35-163 (635)
61 1jl5_A Outer protein YOPM; leu 99.8 8.1E-18 2.8E-22 188.5 18.0 269 500-815 91-367 (454)
62 2z66_A Variable lymphocyte rec 99.8 6.5E-18 2.2E-22 179.8 15.9 241 524-816 10-259 (306)
63 1jl5_A Outer protein YOPM; leu 99.8 3.6E-18 1.2E-22 191.4 14.5 266 524-823 74-354 (454)
64 3zyi_A Leucine-rich repeat-con 99.8 8.5E-18 2.9E-22 189.3 17.6 222 500-738 75-303 (452)
65 1ozn_A Reticulon 4 receptor; N 99.8 4.5E-18 1.6E-22 179.0 14.1 203 499-740 31-240 (285)
66 3o53_A Protein LRIM1, AGAP0063 99.8 4.4E-19 1.5E-23 189.6 6.2 264 523-823 12-280 (317)
67 1p9a_G Platelet glycoprotein I 99.7 1.5E-17 5.1E-22 174.9 17.6 130 498-630 8-137 (290)
68 2o6q_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 170.5 18.2 197 501-759 17-216 (270)
69 3g06_A SSPH2 (leucine-rich rep 99.7 8.5E-17 2.9E-21 185.8 19.5 235 500-792 61-295 (622)
70 3rfs_A Internalin B, repeat mo 99.7 2E-17 6.8E-22 172.6 11.8 198 520-766 40-240 (272)
71 1h6u_A Internalin H; cell adhe 99.7 7.6E-17 2.6E-21 171.2 16.2 190 520-760 40-229 (308)
72 2z62_A TOLL-like receptor 4, v 99.7 1.2E-16 4.1E-21 167.2 17.1 216 505-760 12-236 (276)
73 1wwl_A Monocyte differentiatio 99.7 7.6E-18 2.6E-22 179.6 4.4 243 501-791 44-306 (312)
74 2xwt_C Thyrotropin receptor; s 99.7 2.2E-16 7.6E-21 161.2 14.5 112 512-627 23-140 (239)
75 2o6q_A Variable lymphocyte rec 99.7 4E-16 1.4E-20 162.5 16.6 197 522-792 17-216 (270)
76 3oja_A Leucine-rich immune mol 99.7 1.7E-17 5.9E-22 187.7 6.7 233 499-758 33-272 (487)
77 1h6u_A Internalin H; cell adhe 99.7 6.3E-16 2.2E-20 164.1 16.6 190 498-737 39-229 (308)
78 4ay9_X Follicle-stimulating ho 99.7 2.5E-16 8.4E-21 170.7 13.5 238 503-759 12-257 (350)
79 2z62_A TOLL-like receptor 4, v 99.7 7.3E-16 2.5E-20 161.2 16.2 201 500-738 28-237 (276)
80 2xwt_C Thyrotropin receptor; s 99.7 4.2E-16 1.4E-20 159.2 13.2 129 500-630 31-169 (239)
81 3rfs_A Internalin B, repeat mo 99.7 5.2E-16 1.8E-20 161.8 14.0 210 522-791 20-232 (272)
82 1wwl_A Monocyte differentiatio 99.6 9.1E-17 3.1E-21 171.2 7.1 239 520-815 42-306 (312)
83 1p9a_G Platelet glycoprotein I 99.6 1.7E-15 5.6E-20 159.2 15.8 196 520-760 9-207 (290)
84 4ay9_X Follicle-stimulating ho 99.6 1.8E-15 6.2E-20 163.9 15.7 234 524-813 12-254 (350)
85 3m19_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 153.5 16.2 125 502-628 16-142 (251)
86 1z7x_W Ribonuclease inhibitor; 99.6 2.3E-17 7.8E-22 186.6 -2.2 135 676-816 255-409 (461)
87 1h6t_A Internalin B; cell adhe 99.6 9.4E-15 3.2E-19 153.6 14.5 168 520-760 45-212 (291)
88 1h6t_A Internalin B; cell adhe 99.6 2.7E-15 9.3E-20 157.7 10.2 126 496-629 42-168 (291)
89 3m19_A Variable lymphocyte rec 99.6 1.9E-14 6.4E-19 148.0 15.1 104 521-629 14-119 (251)
90 2ca6_A RAN GTPase-activating p 99.6 1.5E-15 5E-20 167.2 7.2 109 520-629 31-171 (386)
91 1z7x_W Ribonuclease inhibitor; 99.6 1.1E-15 3.6E-20 172.9 6.2 102 501-603 4-124 (461)
92 1m9s_A Internalin B; cell inva 99.6 4.2E-15 1.4E-19 171.5 11.1 78 678-760 132-209 (605)
93 2ast_B S-phase kinase-associat 99.6 3.2E-15 1.1E-19 161.2 8.2 104 521-627 70-178 (336)
94 1m9s_A Internalin B; cell inva 99.6 4.5E-15 1.5E-19 171.2 9.9 168 520-737 42-209 (605)
95 4glp_A Monocyte differentiatio 99.6 1E-14 3.4E-19 155.2 11.9 198 545-759 91-305 (310)
96 1w5s_A Origin recognition comp 99.5 7.9E-14 2.7E-18 155.0 18.6 283 153-456 22-371 (412)
97 2qen_A Walker-type ATPase; unk 99.5 7.7E-14 2.6E-18 151.3 17.3 283 152-473 11-348 (350)
98 2ca6_A RAN GTPase-activating p 99.5 4E-15 1.4E-19 163.7 6.9 100 528-630 16-135 (386)
99 3ogk_B Coronatine-insensitive 99.5 1.3E-14 4.4E-19 169.6 9.4 281 520-821 191-528 (592)
100 3cvr_A Invasion plasmid antige 99.5 6.9E-14 2.4E-18 159.4 14.9 187 522-766 60-248 (571)
101 2ast_B S-phase kinase-associat 99.5 1.7E-14 5.7E-19 155.6 9.4 127 501-628 71-206 (336)
102 2fna_A Conserved hypothetical 99.5 3.2E-13 1.1E-17 146.9 19.0 279 153-473 13-356 (357)
103 3goz_A Leucine-rich repeat-con 99.5 4.1E-14 1.4E-18 154.0 11.7 206 520-759 21-264 (362)
104 3goz_A Leucine-rich repeat-con 99.5 9.3E-15 3.2E-19 159.2 6.4 252 526-816 3-295 (362)
105 3ogk_B Coronatine-insensitive 99.5 3.6E-14 1.2E-18 165.8 11.3 290 502-816 140-499 (592)
106 2o6s_A Variable lymphocyte rec 99.5 9.5E-14 3.3E-18 138.2 12.4 126 503-630 10-137 (208)
107 2v9t_B SLIT homolog 2 protein 99.5 8.6E-14 2.9E-18 139.6 11.3 129 503-633 14-144 (220)
108 4glp_A Monocyte differentiatio 99.5 6.5E-14 2.2E-18 148.9 9.4 196 502-737 93-306 (310)
109 1xeu_A Internalin C; cellular 99.5 5E-14 1.7E-18 145.6 8.0 97 522-627 20-116 (263)
110 3cvr_A Invasion plasmid antige 99.5 3.4E-13 1.2E-17 153.7 15.0 179 501-740 60-245 (571)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 2.3E-13 7.9E-18 136.5 11.5 128 504-633 15-145 (220)
112 4ezg_A Putative uncharacterize 99.4 3.9E-13 1.3E-17 132.5 12.7 103 520-627 43-146 (197)
113 2p1m_B Transport inhibitor res 99.4 7.6E-14 2.6E-18 163.1 8.1 295 500-817 156-518 (594)
114 3qfl_A MLA10; coiled-coil, (CC 99.4 5.8E-13 2E-17 116.4 11.7 82 6-95 1-84 (115)
115 1xeu_A Internalin C; cellular 99.4 2.2E-13 7.6E-18 140.7 10.1 121 500-629 19-140 (263)
116 3e6j_A Variable lymphocyte rec 99.4 4.4E-13 1.5E-17 135.4 11.8 123 505-630 24-148 (229)
117 3e6j_A Variable lymphocyte rec 99.4 6.1E-13 2.1E-17 134.4 12.0 128 500-629 40-171 (229)
118 2p1m_B Transport inhibitor res 99.4 6.5E-14 2.2E-18 163.7 5.2 126 500-627 105-245 (594)
119 2xot_A Amphoterin-induced prot 99.4 6.1E-13 2.1E-17 144.6 11.8 127 503-631 21-150 (361)
120 2o6s_A Variable lymphocyte rec 99.4 2E-12 7E-17 128.5 13.6 145 499-652 27-176 (208)
121 4ezg_A Putative uncharacterize 99.4 8.3E-13 2.8E-17 130.1 10.4 129 497-630 41-172 (197)
122 2v9t_B SLIT homolog 2 protein 99.4 3.1E-12 1E-16 128.3 13.6 128 500-629 32-164 (220)
123 2ell_A Acidic leucine-rich nuc 99.4 1.4E-12 4.8E-17 124.8 10.5 129 500-632 24-162 (168)
124 2xot_A Amphoterin-induced prot 99.4 1.4E-12 4.6E-17 141.8 11.2 103 523-630 20-125 (361)
125 1dce_A Protein (RAB geranylger 99.4 5E-14 1.7E-18 161.5 -1.3 102 677-788 463-567 (567)
126 2je0_A Acidic leucine-rich nuc 99.3 2.1E-12 7.2E-17 120.8 9.4 122 500-625 17-148 (149)
127 1dce_A Protein (RAB geranylger 99.3 6.5E-14 2.2E-18 160.6 -1.3 120 678-811 442-566 (567)
128 2wfh_A SLIT homolog 2 protein 99.3 4.8E-12 1.6E-16 123.9 12.2 124 503-629 13-138 (193)
129 2v70_A SLIT-2, SLIT homolog 2 99.3 3.8E-12 1.3E-16 127.6 11.7 129 500-630 32-166 (220)
130 1w8a_A SLIT protein; signaling 99.3 3E-12 1E-16 125.4 10.7 126 503-630 11-139 (192)
131 2o6r_A Variable lymphocyte rec 99.3 4.9E-12 1.7E-16 122.1 11.7 125 503-629 10-136 (177)
132 2qby_B CDC6 homolog 3, cell di 99.3 5.6E-11 1.9E-15 130.5 20.1 282 153-456 20-339 (384)
133 1a9n_A U2A', U2A'; complex (nu 99.3 3.3E-12 1.1E-16 123.3 8.9 128 499-630 18-153 (176)
134 4b8c_D Glucose-repressible alc 99.3 4E-12 1.4E-16 150.5 7.6 88 539-629 218-305 (727)
135 2v1u_A Cell division control p 99.2 2.3E-10 8E-15 125.6 20.4 280 153-456 19-351 (387)
136 2ell_A Acidic leucine-rich nuc 99.2 6.5E-12 2.2E-16 120.2 6.8 108 520-631 23-134 (168)
137 1fnn_A CDC6P, cell division co 99.2 7.6E-10 2.6E-14 121.6 21.9 279 153-456 17-351 (389)
138 2wfh_A SLIT homolog 2 protein 99.2 4.2E-11 1.4E-15 117.1 9.2 106 524-634 13-119 (193)
139 4b8c_D Glucose-repressible alc 99.2 2.1E-11 7.1E-16 144.4 8.1 107 520-630 223-329 (727)
140 2je0_A Acidic leucine-rich nuc 99.2 1.4E-11 4.7E-16 115.2 5.1 109 520-632 16-128 (149)
141 2qby_A CDC6 homolog 1, cell di 99.2 1.6E-10 5.5E-15 126.9 14.1 281 153-455 20-347 (386)
142 1njg_A DNA polymerase III subu 99.2 2.2E-10 7.5E-15 117.0 14.1 187 153-350 23-231 (250)
143 1w8a_A SLIT protein; signaling 99.1 4.8E-11 1.6E-15 116.7 7.9 106 524-634 11-119 (192)
144 1a9n_A U2A', U2A'; complex (nu 99.1 3.5E-11 1.2E-15 115.9 5.8 108 520-631 18-127 (176)
145 3sb4_A Hypothetical leucine ri 99.1 1.9E-10 6.6E-15 123.1 11.9 215 568-810 100-326 (329)
146 2r9u_A Variable lymphocyte rec 99.1 1.6E-10 5.5E-15 110.8 9.3 100 524-628 15-116 (174)
147 2chg_A Replication factor C sm 99.1 6.9E-10 2.4E-14 111.4 14.1 174 153-348 17-205 (226)
148 3sb4_A Hypothetical leucine ri 99.1 1E-10 3.5E-15 125.2 8.3 285 520-837 24-328 (329)
149 2r9u_A Variable lymphocyte rec 99.1 2.8E-10 9.5E-15 109.1 8.7 106 503-610 15-122 (174)
150 3g39_A Variable lymphocyte rec 99.0 3E-10 1E-14 108.5 8.5 100 524-628 12-113 (170)
151 3g39_A Variable lymphocyte rec 99.0 4.5E-10 1.5E-14 107.3 9.6 101 502-603 11-113 (170)
152 1ds9_A Outer arm dynein; leuci 99.0 3.1E-11 1E-15 118.9 0.5 117 511-632 36-155 (198)
153 1ds9_A Outer arm dynein; leuci 99.0 1.5E-11 5.2E-16 121.1 -2.5 102 522-629 24-127 (198)
154 2o6r_A Variable lymphocyte rec 99.0 8.3E-10 2.9E-14 106.3 9.1 106 523-633 9-116 (177)
155 4fdw_A Leucine rich hypothetic 98.9 1.9E-08 6.6E-13 109.9 17.9 110 511-626 123-235 (401)
156 1sxj_B Activator 1 37 kDa subu 98.9 3.2E-09 1.1E-13 113.3 11.3 175 153-349 21-212 (323)
157 1hqc_A RUVB; extended AAA-ATPa 98.8 7.4E-09 2.5E-13 110.5 9.7 165 153-350 12-214 (324)
158 4fdw_A Leucine rich hypothetic 98.8 8.4E-08 2.9E-12 104.8 17.5 209 501-759 136-356 (401)
159 1iqp_A RFCS; clamp loader, ext 98.7 2.8E-08 9.4E-13 106.2 10.9 174 153-351 25-216 (327)
160 2ifg_A High affinity nerve gro 98.7 2.3E-08 7.9E-13 107.8 8.7 97 527-628 14-114 (347)
161 3un9_A NLR family member X1; l 98.6 3.1E-08 1.1E-12 107.2 6.3 106 520-628 71-194 (372)
162 2ifg_A High affinity nerve gro 98.6 1E-07 3.6E-12 102.6 9.4 99 504-603 12-114 (347)
163 2chq_A Replication factor C sm 98.6 3.3E-07 1.1E-11 97.4 13.0 170 153-347 17-204 (319)
164 1jr3_A DNA polymerase III subu 98.5 8.4E-07 2.9E-11 96.5 14.2 184 153-347 16-221 (373)
165 3te6_A Regulatory protein SIR3 98.5 8.7E-07 3E-11 92.1 13.3 157 155-314 22-211 (318)
166 4fs7_A Uncharacterized protein 98.5 1.8E-06 6E-11 94.6 16.5 102 520-626 70-194 (394)
167 1jbk_A CLPB protein; beta barr 98.3 7.7E-07 2.6E-11 86.5 7.6 46 153-198 22-67 (195)
168 1sxj_D Activator 1 41 kDa subu 98.3 3.1E-06 1.1E-10 91.2 12.2 183 153-346 37-234 (353)
169 4fs7_A Uncharacterized protein 98.3 6.4E-06 2.2E-10 90.2 13.9 277 498-813 69-374 (394)
170 3h4m_A Proteasome-activating n 98.2 3.1E-06 1.1E-10 88.1 10.5 159 153-339 17-222 (285)
171 3bos_A Putative DNA replicatio 98.2 1.3E-06 4.6E-11 88.3 7.5 161 153-346 28-216 (242)
172 3un9_A NLR family member X1; l 98.2 4.7E-07 1.6E-11 97.9 3.9 126 501-629 102-251 (372)
173 1d2n_A N-ethylmaleimide-sensit 98.2 4.5E-05 1.5E-09 78.6 16.9 186 153-369 33-264 (272)
174 1sxj_A Activator 1 95 kDa subu 98.1 1.2E-05 4.2E-10 90.8 13.4 178 153-348 39-254 (516)
175 1sxj_E Activator 1 40 kDa subu 98.1 5.5E-06 1.9E-10 89.3 9.7 184 153-346 14-236 (354)
176 3pvs_A Replication-associated 98.1 2.9E-05 9.8E-10 85.5 15.2 164 153-345 26-213 (447)
177 2ra8_A Uncharacterized protein 98.1 6.3E-06 2.2E-10 88.2 9.3 81 542-625 136-227 (362)
178 3eie_A Vacuolar protein sortin 98.0 3.8E-05 1.3E-09 81.2 13.9 167 153-346 18-227 (322)
179 2z4s_A Chromosomal replication 98.0 2.8E-05 9.5E-10 85.8 13.2 171 153-344 105-303 (440)
180 3d8b_A Fidgetin-like protein 1 98.0 4E-05 1.4E-09 82.3 13.7 169 153-348 84-296 (357)
181 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00022 7.5E-09 75.1 19.2 169 153-347 12-223 (322)
182 3pfi_A Holliday junction ATP-d 98.0 4.2E-05 1.4E-09 81.6 13.9 160 153-346 29-226 (338)
183 4gt6_A Cell surface protein; l 98.0 0.00012 4E-09 80.0 17.7 99 523-625 66-168 (394)
184 3syl_A Protein CBBX; photosynt 98.0 1E-05 3.4E-10 85.3 8.8 45 154-198 32-91 (309)
185 3u61_B DNA polymerase accessor 98.0 3.5E-05 1.2E-09 81.7 12.9 165 153-344 26-213 (324)
186 2qz4_A Paraplegin; AAA+, SPG7, 98.0 4.3E-05 1.5E-09 78.2 12.7 164 153-341 6-215 (262)
187 3vfd_A Spastin; ATPase, microt 97.9 0.00018 6.3E-09 78.1 17.4 167 153-346 115-325 (389)
188 2qp9_X Vacuolar protein sortin 97.9 6.4E-05 2.2E-09 80.5 13.2 167 153-346 51-260 (355)
189 2p65_A Hypothetical protein PF 97.9 2.9E-05 9.9E-10 74.7 9.3 46 153-198 22-67 (187)
190 1sxj_C Activator 1 40 kDa subu 97.9 6E-05 2E-09 80.4 12.4 164 153-341 25-206 (340)
191 3b9p_A CG5977-PA, isoform A; A 97.9 0.00013 4.6E-09 76.1 14.8 167 153-346 21-232 (297)
192 3uk6_A RUVB-like 2; hexameric 97.9 4.4E-05 1.5E-09 82.6 11.4 46 153-198 44-94 (368)
193 4gt6_A Cell surface protein; l 97.9 0.00022 7.4E-09 77.9 16.8 265 502-789 66-342 (394)
194 3e4g_A ATP synthase subunit S, 97.9 5E-06 1.7E-10 77.9 3.0 86 700-795 62-153 (176)
195 2zan_A Vacuolar protein sortin 97.9 0.00035 1.2E-08 77.2 18.2 168 153-346 134-344 (444)
196 4h09_A Hypothetical leucine ri 97.9 0.00034 1.2E-08 75.8 17.9 120 499-626 45-167 (379)
197 1a5t_A Delta prime, HOLB; zinc 97.8 0.00016 5.6E-09 76.7 14.7 160 158-345 7-203 (334)
198 3cf0_A Transitional endoplasmi 97.8 0.00037 1.3E-08 72.7 16.2 163 153-342 15-223 (301)
199 3rw6_A Nuclear RNA export fact 97.8 2.7E-05 9.2E-10 78.9 6.8 82 542-625 167-259 (267)
200 3e4g_A ATP synthase subunit S, 97.8 3.6E-05 1.2E-09 72.2 6.7 88 520-607 60-154 (176)
201 2ra8_A Uncharacterized protein 97.7 5.4E-05 1.9E-09 80.9 8.1 126 501-628 173-318 (362)
202 1io0_A Tropomodulin; LRR prote 97.7 3.5E-05 1.2E-09 74.1 5.8 109 520-630 35-164 (185)
203 2w58_A DNAI, primosome compone 97.7 3.6E-05 1.2E-09 75.3 5.7 113 160-293 36-158 (202)
204 3n70_A Transport activator; si 97.7 4.8E-05 1.6E-09 69.9 6.0 45 154-198 2-48 (145)
205 1l8q_A Chromosomal replication 97.6 0.00034 1.2E-08 74.0 13.0 154 162-341 23-202 (324)
206 3ec2_A DNA replication protein 97.6 2.7E-05 9.3E-10 74.6 4.0 117 158-294 19-143 (180)
207 3pxg_A Negative regulator of g 97.5 0.00063 2.2E-08 75.6 13.6 46 153-198 180-225 (468)
208 4h09_A Hypothetical leucine ri 97.5 0.0025 8.6E-08 68.9 18.2 98 520-625 45-143 (379)
209 2r62_A Cell division protease 97.5 0.00013 4.4E-09 74.9 6.7 46 153-198 11-68 (268)
210 3rw6_A Nuclear RNA export fact 97.4 0.00013 4.3E-09 73.9 6.1 78 520-599 169-258 (267)
211 4b4t_J 26S protease regulatory 97.4 0.00034 1.2E-08 74.5 9.5 160 153-340 148-354 (405)
212 1lv7_A FTSH; alpha/beta domain 97.4 0.0018 6.1E-08 65.8 14.5 46 153-198 12-69 (257)
213 3co5_A Putative two-component 97.4 8.8E-05 3E-09 67.9 3.8 45 154-198 5-51 (143)
214 4b4t_L 26S protease subunit RP 97.3 0.00044 1.5E-08 74.9 9.2 160 153-340 181-387 (437)
215 1qvr_A CLPB protein; coiled co 97.3 0.00038 1.3E-08 83.8 9.5 46 153-198 170-215 (854)
216 2gno_A DNA polymerase III, gam 97.3 0.00094 3.2E-08 69.4 11.2 138 157-314 1-152 (305)
217 4b4t_I 26S protease regulatory 97.3 0.00063 2.2E-08 72.7 10.0 46 153-198 182-240 (437)
218 4b4t_M 26S protease regulatory 97.3 0.00041 1.4E-08 75.1 8.5 46 153-198 181-239 (434)
219 4b4t_H 26S protease regulatory 97.3 0.00062 2.1E-08 73.5 9.7 46 153-198 209-267 (467)
220 3hu3_A Transitional endoplasmi 97.3 0.0013 4.4E-08 73.1 12.4 160 153-339 204-406 (489)
221 3pxi_A Negative regulator of g 97.3 0.0014 4.8E-08 77.9 13.3 46 153-198 180-225 (758)
222 1in4_A RUVB, holliday junction 97.2 0.0019 6.6E-08 68.3 12.6 46 153-198 25-75 (334)
223 2ce7_A Cell division protein F 97.2 0.0017 5.9E-08 71.4 11.8 161 153-340 16-221 (476)
224 1io0_A Tropomodulin; LRR prote 97.1 0.0003 1E-08 67.5 4.5 103 500-603 36-162 (185)
225 4b4t_K 26S protease regulatory 97.1 0.0012 4E-08 71.5 8.9 46 153-198 172-230 (428)
226 4fcw_A Chaperone protein CLPB; 97.0 0.00097 3.3E-08 69.9 8.0 45 154-198 18-71 (311)
227 1r6b_X CLPA protein; AAA+, N-t 97.0 0.003 1E-07 75.2 12.7 46 153-198 186-231 (758)
228 2c9o_A RUVB-like 1; hexameric 96.8 0.0069 2.3E-07 67.1 12.3 46 153-198 37-87 (456)
229 3t15_A Ribulose bisphosphate c 96.8 0.0086 2.9E-07 61.9 12.1 25 174-198 36-60 (293)
230 3m6a_A ATP-dependent protease 96.5 0.0086 3E-07 67.7 10.9 46 153-198 81-132 (543)
231 2kjq_A DNAA-related protein; s 96.5 0.0023 7.8E-08 58.6 5.1 26 173-198 35-60 (149)
232 2dhr_A FTSH; AAA+ protein, hex 96.5 0.017 5.9E-07 63.9 13.0 46 153-198 31-88 (499)
233 1ixz_A ATP-dependent metallopr 96.5 0.018 6.3E-07 58.0 12.3 46 153-198 16-73 (254)
234 1iy2_A ATP-dependent metallopr 96.5 0.0099 3.4E-07 61.0 10.4 46 153-198 40-97 (278)
235 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0011 3.8E-08 68.1 3.0 69 174-267 123-193 (331)
236 1ypw_A Transitional endoplasmi 96.4 0.015 5.1E-07 69.0 12.1 46 153-198 204-262 (806)
237 3cf2_A TER ATPase, transitiona 96.4 0.0062 2.1E-07 71.1 8.6 161 153-340 204-407 (806)
238 1n0w_A DNA repair protein RAD5 96.3 0.012 4E-07 58.9 9.5 94 173-267 23-130 (243)
239 3hr8_A Protein RECA; alpha and 96.3 0.0085 2.9E-07 63.2 8.6 87 173-267 60-150 (356)
240 2cvh_A DNA repair and recombin 96.3 0.008 2.7E-07 59.1 7.8 88 173-267 19-116 (220)
241 2z43_A DNA repair and recombin 96.2 0.018 6.3E-07 60.4 10.8 94 173-267 106-214 (324)
242 3io5_A Recombination and repai 96.1 0.02 7E-07 58.4 10.0 87 176-268 30-123 (333)
243 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0082 2.8E-07 59.6 7.2 47 174-225 23-69 (235)
244 1u94_A RECA protein, recombina 96.1 0.014 4.7E-07 61.8 8.8 87 173-267 62-152 (356)
245 1v5w_A DMC1, meiotic recombina 96.0 0.025 8.6E-07 59.8 10.7 94 173-267 121-230 (343)
246 2x8a_A Nuclear valosin-contain 96.0 0.022 7.6E-07 58.0 9.9 46 153-198 10-68 (274)
247 2qgz_A Helicase loader, putati 96.0 0.0046 1.6E-07 64.4 4.5 41 158-198 133-176 (308)
248 3pxi_A Negative regulator of g 95.9 0.0084 2.9E-07 71.1 7.2 46 153-198 491-545 (758)
249 1g5t_A COB(I)alamin adenosyltr 95.9 0.0055 1.9E-07 58.1 4.3 114 175-295 29-164 (196)
250 2b8t_A Thymidine kinase; deoxy 95.9 0.0028 9.5E-08 62.1 2.3 114 173-295 11-127 (223)
251 1xp8_A RECA protein, recombina 95.9 0.02 6.8E-07 60.8 8.9 87 173-267 73-163 (366)
252 2zr9_A Protein RECA, recombina 95.8 0.022 7.4E-07 60.3 8.8 87 173-267 60-150 (349)
253 1rz3_A Hypothetical protein rb 95.7 0.0089 3E-07 57.9 4.9 42 157-198 2-46 (201)
254 3ice_A Transcription terminati 95.6 0.006 2E-07 63.9 3.6 100 164-267 163-272 (422)
255 2xxa_A Signal recognition part 95.6 0.14 4.7E-06 55.7 14.3 91 173-265 99-192 (433)
256 2bjv_A PSP operon transcriptio 95.4 0.013 4.3E-07 59.7 5.3 46 153-198 6-53 (265)
257 1ofh_A ATP-dependent HSL prote 95.4 0.0095 3.2E-07 62.2 4.4 46 153-198 15-74 (310)
258 2i1q_A DNA repair and recombin 95.4 0.044 1.5E-06 57.5 9.3 93 173-266 97-214 (322)
259 3c8u_A Fructokinase; YP_612366 95.3 0.012 4.1E-07 57.4 4.5 39 160-198 6-46 (208)
260 2orw_A Thymidine kinase; TMTK, 95.3 0.0025 8.4E-08 60.8 -0.6 110 175-295 4-114 (184)
261 2ck3_D ATP synthase subunit be 95.2 0.061 2.1E-06 58.2 9.9 101 165-267 143-264 (482)
262 3rfe_A Platelet glycoprotein I 95.2 0.021 7.2E-07 50.7 5.3 52 504-555 12-65 (130)
263 3lda_A DNA repair protein RAD5 95.1 0.086 2.9E-06 56.6 10.6 94 173-267 177-284 (400)
264 2px0_A Flagellar biosynthesis 95.1 0.062 2.1E-06 55.3 9.1 86 173-264 104-190 (296)
265 1qvr_A CLPB protein; coiled co 95.0 0.018 6E-07 69.2 5.5 45 154-198 559-612 (854)
266 4a74_A DNA repair and recombin 95.0 0.086 2.9E-06 52.0 9.7 58 173-231 24-84 (231)
267 1ojl_A Transcriptional regulat 95.0 0.021 7.1E-07 59.3 5.3 46 153-198 2-49 (304)
268 1qhx_A CPT, protein (chloramph 94.9 0.012 4.1E-07 55.6 3.0 24 175-198 4-27 (178)
269 3rfe_A Platelet glycoprotein I 94.9 0.026 9E-07 50.0 4.9 52 549-603 12-66 (130)
270 3kb2_A SPBC2 prophage-derived 94.8 0.013 4.4E-07 55.0 3.0 24 175-198 2-25 (173)
271 1jr3_D DNA polymerase III, del 94.8 0.14 4.7E-06 54.1 11.4 154 165-345 9-183 (343)
272 3lw7_A Adenylate kinase relate 94.8 0.013 4.4E-07 55.2 2.9 20 175-194 2-21 (179)
273 1pzn_A RAD51, DNA repair and r 94.8 0.062 2.1E-06 56.8 8.5 95 172-267 129-242 (349)
274 1j8m_F SRP54, signal recogniti 94.7 0.083 2.8E-06 54.3 9.0 89 174-265 98-189 (297)
275 3vaa_A Shikimate kinase, SK; s 94.6 0.016 5.5E-07 56.0 3.2 26 173-198 24-49 (199)
276 1zp6_A Hypothetical protein AT 94.6 0.018 6.1E-07 55.2 3.3 26 173-198 8-33 (191)
277 1sky_E F1-ATPase, F1-ATP synth 94.6 0.055 1.9E-06 58.7 7.4 91 175-267 152-256 (473)
278 2hf9_A Probable hydrogenase ni 94.6 0.025 8.6E-07 55.8 4.5 40 159-198 23-62 (226)
279 2ffh_A Protein (FFH); SRP54, s 94.6 0.095 3.2E-06 56.6 9.3 88 174-265 98-189 (425)
280 3dm5_A SRP54, signal recogniti 94.5 0.16 5.3E-06 55.0 10.9 26 173-198 99-124 (443)
281 1kgd_A CASK, peripheral plasma 94.5 0.018 6E-07 54.6 3.0 25 174-198 5-29 (180)
282 2ga8_A Hypothetical 39.9 kDa p 94.4 0.034 1.1E-06 58.0 5.2 43 156-198 2-48 (359)
283 1kag_A SKI, shikimate kinase I 94.4 0.015 5.2E-07 54.6 2.4 24 175-198 5-28 (173)
284 1ly1_A Polynucleotide kinase; 94.4 0.019 6.6E-07 54.2 3.1 22 175-196 3-24 (181)
285 2r44_A Uncharacterized protein 94.4 0.021 7.2E-07 60.2 3.7 44 153-198 27-70 (331)
286 3trf_A Shikimate kinase, SK; a 94.4 0.019 6.5E-07 54.6 3.0 25 174-198 5-29 (185)
287 3uie_A Adenylyl-sulfate kinase 94.3 0.024 8E-07 54.8 3.5 27 172-198 23-49 (200)
288 1fx0_B ATP synthase beta chain 94.3 0.08 2.7E-06 57.5 7.9 100 166-267 156-277 (498)
289 1vma_A Cell division protein F 94.3 0.093 3.2E-06 54.1 8.1 89 173-265 103-195 (306)
290 4eun_A Thermoresistant glucoki 94.3 0.022 7.5E-07 55.1 3.2 27 172-198 27-53 (200)
291 2dr3_A UPF0273 protein PH0284; 94.3 0.079 2.7E-06 52.9 7.6 47 174-225 23-69 (247)
292 2wsm_A Hydrogenase expression/ 94.2 0.025 8.4E-07 55.6 3.6 42 157-198 13-54 (221)
293 3cf2_A TER ATPase, transitiona 94.2 0.068 2.3E-06 62.5 7.6 46 153-198 477-535 (806)
294 3t61_A Gluconokinase; PSI-biol 94.1 0.018 6.3E-07 55.7 2.3 25 174-198 18-42 (202)
295 3nbx_X ATPase RAVA; AAA+ ATPas 94.1 0.037 1.3E-06 61.3 5.0 43 154-198 23-65 (500)
296 3e70_C DPA, signal recognition 94.1 0.21 7.2E-06 52.0 10.5 58 172-232 127-185 (328)
297 1odf_A YGR205W, hypothetical 3 94.0 0.039 1.3E-06 56.6 4.7 27 172-198 29-55 (290)
298 1zuh_A Shikimate kinase; alpha 94.0 0.025 8.4E-07 52.9 3.0 26 173-198 6-31 (168)
299 3bh0_A DNAB-like replicative h 94.0 0.15 5E-06 53.1 9.2 52 173-229 67-118 (315)
300 1knq_A Gluconate kinase; ALFA/ 94.0 0.026 8.9E-07 53.1 3.1 25 174-198 8-32 (175)
301 2yvu_A Probable adenylyl-sulfa 94.0 0.029 1E-06 53.4 3.4 26 173-198 12-37 (186)
302 1nks_A Adenylate kinase; therm 94.0 0.023 7.9E-07 54.4 2.7 24 175-198 2-25 (194)
303 4gp7_A Metallophosphoesterase; 94.0 0.026 9E-07 52.9 3.0 24 173-196 8-31 (171)
304 1kht_A Adenylate kinase; phosp 93.9 0.025 8.5E-07 54.1 2.8 24 175-198 4-27 (192)
305 3hws_A ATP-dependent CLP prote 93.9 0.039 1.3E-06 59.0 4.7 45 154-198 16-75 (363)
306 3iij_A Coilin-interacting nucl 93.9 0.022 7.6E-07 53.9 2.4 25 174-198 11-35 (180)
307 3tau_A Guanylate kinase, GMP k 93.9 0.03 1E-06 54.4 3.4 26 173-198 7-32 (208)
308 3fwy_A Light-independent proto 93.9 0.028 9.7E-07 58.3 3.4 41 172-215 46-86 (314)
309 3tr0_A Guanylate kinase, GMP k 93.9 0.031 1.1E-06 54.1 3.4 25 174-198 7-31 (205)
310 2bdt_A BH3686; alpha-beta prot 93.9 0.029 1E-06 53.5 3.2 23 175-197 3-25 (189)
311 2qor_A Guanylate kinase; phosp 93.8 0.026 8.8E-07 54.7 2.8 26 173-198 11-36 (204)
312 2ze6_A Isopentenyl transferase 93.8 0.027 9.4E-07 56.6 3.1 24 175-198 2-25 (253)
313 3a00_A Guanylate kinase, GMP k 93.8 0.024 8.3E-07 54.0 2.5 24 175-198 2-25 (186)
314 2rhm_A Putative kinase; P-loop 93.8 0.031 1.1E-06 53.5 3.2 25 174-198 5-29 (193)
315 1y63_A LMAJ004144AAA protein; 93.8 0.032 1.1E-06 53.0 3.3 24 174-197 10-33 (184)
316 2jaq_A Deoxyguanosine kinase; 93.7 0.028 9.5E-07 54.4 2.8 23 176-198 2-24 (205)
317 1via_A Shikimate kinase; struc 93.7 0.025 8.4E-07 53.3 2.4 24 175-198 5-28 (175)
318 3kl4_A SRP54, signal recogniti 93.7 0.25 8.5E-06 53.4 10.4 26 173-198 96-121 (433)
319 2qt1_A Nicotinamide riboside k 93.7 0.034 1.2E-06 54.0 3.4 26 173-198 20-45 (207)
320 1g8p_A Magnesium-chelatase 38 93.7 0.026 8.8E-07 60.0 2.7 46 153-198 24-69 (350)
321 1ukz_A Uridylate kinase; trans 93.7 0.035 1.2E-06 53.7 3.5 26 173-198 14-39 (203)
322 3asz_A Uridine kinase; cytidin 93.7 0.032 1.1E-06 54.3 3.2 26 173-198 5-30 (211)
323 1ye8_A Protein THEP1, hypothet 93.7 0.032 1.1E-06 52.6 3.0 23 176-198 2-24 (178)
324 2j41_A Guanylate kinase; GMP, 93.7 0.035 1.2E-06 53.8 3.4 25 174-198 6-30 (207)
325 2if2_A Dephospho-COA kinase; a 93.6 0.03 1E-06 54.2 2.9 22 175-196 2-23 (204)
326 1xjc_A MOBB protein homolog; s 93.6 0.036 1.2E-06 51.5 3.1 26 173-198 3-28 (169)
327 1um8_A ATP-dependent CLP prote 93.6 0.051 1.7E-06 58.4 4.9 45 154-198 22-96 (376)
328 2iyv_A Shikimate kinase, SK; t 93.6 0.025 8.6E-07 53.7 2.2 24 175-198 3-26 (184)
329 1cke_A CK, MSSA, protein (cyti 93.6 0.03 1E-06 55.2 2.8 24 175-198 6-29 (227)
330 2c95_A Adenylate kinase 1; tra 93.6 0.033 1.1E-06 53.4 3.0 26 173-198 8-33 (196)
331 1uf9_A TT1252 protein; P-loop, 93.6 0.037 1.3E-06 53.4 3.3 25 173-197 7-31 (203)
332 1jjv_A Dephospho-COA kinase; P 93.5 0.035 1.2E-06 53.8 3.2 22 175-196 3-24 (206)
333 1ex7_A Guanylate kinase; subst 93.5 0.03 1E-06 53.0 2.4 24 175-198 2-25 (186)
334 1tev_A UMP-CMP kinase; ploop, 93.5 0.036 1.2E-06 53.1 3.1 24 175-198 4-27 (196)
335 1uj2_A Uridine-cytidine kinase 93.4 0.039 1.3E-06 55.5 3.3 27 172-198 20-46 (252)
336 1e6c_A Shikimate kinase; phosp 93.4 0.031 1E-06 52.4 2.4 24 175-198 3-26 (173)
337 3cm0_A Adenylate kinase; ATP-b 93.4 0.036 1.2E-06 52.7 2.9 24 175-198 5-28 (186)
338 3jvv_A Twitching mobility prot 93.4 0.048 1.6E-06 57.6 4.1 110 173-294 122-231 (356)
339 1lvg_A Guanylate kinase, GMP k 93.4 0.031 1.1E-06 53.8 2.5 25 174-198 4-28 (198)
340 2bbw_A Adenylate kinase 4, AK4 93.4 0.039 1.3E-06 55.3 3.2 25 174-198 27-51 (246)
341 2grj_A Dephospho-COA kinase; T 93.4 0.04 1.4E-06 52.7 3.1 26 173-198 11-36 (192)
342 2bwj_A Adenylate kinase 5; pho 93.3 0.036 1.2E-06 53.3 2.8 24 175-198 13-36 (199)
343 1tue_A Replication protein E1; 93.3 0.053 1.8E-06 51.6 3.8 37 162-198 45-82 (212)
344 3cmu_A Protein RECA, recombina 93.3 0.14 4.7E-06 65.5 8.5 87 172-266 1425-1515(2050)
345 1ls1_A Signal recognition part 93.3 0.19 6.3E-06 51.7 8.2 88 174-265 98-189 (295)
346 3ney_A 55 kDa erythrocyte memb 93.3 0.041 1.4E-06 52.5 3.0 26 173-198 18-43 (197)
347 1gvn_B Zeta; postsegregational 93.2 0.061 2.1E-06 55.2 4.4 26 173-198 32-57 (287)
348 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.044 1.5E-06 55.4 3.3 25 174-198 4-28 (260)
349 3vr4_D V-type sodium ATPase su 93.2 0.099 3.4E-06 56.2 6.0 90 175-267 152-259 (465)
350 2j37_W Signal recognition part 93.2 0.4 1.4E-05 52.9 11.2 26 173-198 100-125 (504)
351 2plr_A DTMP kinase, probable t 93.2 0.041 1.4E-06 53.6 2.9 24 175-198 5-28 (213)
352 3aez_A Pantothenate kinase; tr 93.2 0.047 1.6E-06 56.7 3.5 27 172-198 88-114 (312)
353 2pt5_A Shikimate kinase, SK; a 93.2 0.042 1.5E-06 51.2 2.9 23 176-198 2-24 (168)
354 3umf_A Adenylate kinase; rossm 93.1 0.046 1.6E-06 53.2 3.2 27 172-198 27-53 (217)
355 1qf9_A UMP/CMP kinase, protein 93.1 0.043 1.5E-06 52.4 2.9 25 174-198 6-30 (194)
356 1znw_A Guanylate kinase, GMP k 93.1 0.045 1.5E-06 53.1 3.0 26 173-198 19-44 (207)
357 2pbr_A DTMP kinase, thymidylat 93.1 0.044 1.5E-06 52.4 3.0 23 176-198 2-24 (195)
358 2vli_A Antibiotic resistance p 93.0 0.031 1.1E-06 53.0 1.8 25 174-198 5-29 (183)
359 3tqc_A Pantothenate kinase; bi 93.0 0.071 2.4E-06 55.3 4.6 26 173-198 91-116 (321)
360 2cdn_A Adenylate kinase; phosp 93.0 0.044 1.5E-06 52.9 2.8 25 174-198 20-44 (201)
361 2jeo_A Uridine-cytidine kinase 93.0 0.053 1.8E-06 54.2 3.5 27 172-198 23-49 (245)
362 4a1f_A DNAB helicase, replicat 93.0 0.53 1.8E-05 49.0 11.2 52 173-229 45-96 (338)
363 4e22_A Cytidylate kinase; P-lo 92.9 0.052 1.8E-06 54.6 3.3 26 173-198 26-51 (252)
364 2p5t_B PEZT; postsegregational 92.9 0.058 2E-06 54.2 3.6 26 173-198 31-56 (253)
365 3tlx_A Adenylate kinase 2; str 92.8 0.082 2.8E-06 52.7 4.7 27 172-198 27-53 (243)
366 1htw_A HI0065; nucleotide-bind 92.8 0.061 2.1E-06 49.5 3.4 27 172-198 31-57 (158)
367 1g41_A Heat shock protein HSLU 92.8 0.058 2E-06 58.4 3.7 46 153-198 15-74 (444)
368 2z0h_A DTMP kinase, thymidylat 92.8 0.1 3.5E-06 50.0 5.2 23 176-198 2-24 (197)
369 1z6g_A Guanylate kinase; struc 92.7 0.048 1.6E-06 53.4 2.7 26 173-198 22-47 (218)
370 2r6a_A DNAB helicase, replicat 92.7 2 6.8E-05 47.1 16.1 51 173-227 202-252 (454)
371 1aky_A Adenylate kinase; ATP:A 92.7 0.054 1.8E-06 53.1 3.1 25 174-198 4-28 (220)
372 2wwf_A Thymidilate kinase, put 92.6 0.052 1.8E-06 52.8 2.8 25 174-198 10-34 (212)
373 3l0o_A Transcription terminati 92.6 0.42 1.4E-05 50.1 9.6 53 163-216 163-216 (427)
374 2v54_A DTMP kinase, thymidylat 92.6 0.058 2E-06 52.1 3.1 25 174-198 4-28 (204)
375 3fb4_A Adenylate kinase; psych 92.6 0.053 1.8E-06 53.0 2.8 23 176-198 2-24 (216)
376 1zd8_A GTP:AMP phosphotransfer 92.6 0.054 1.8E-06 53.5 2.8 25 174-198 7-31 (227)
377 2f1r_A Molybdopterin-guanine d 92.5 0.04 1.4E-06 51.5 1.7 24 175-198 3-26 (171)
378 1nn5_A Similar to deoxythymidy 92.5 0.061 2.1E-06 52.4 3.2 25 174-198 9-33 (215)
379 3dl0_A Adenylate kinase; phosp 92.5 0.058 2E-06 52.7 3.0 23 176-198 2-24 (216)
380 1s96_A Guanylate kinase, GMP k 92.5 0.064 2.2E-06 52.5 3.2 26 173-198 15-40 (219)
381 1gtv_A TMK, thymidylate kinase 92.5 0.031 1.1E-06 54.5 0.9 24 175-198 1-24 (214)
382 3oaa_A ATP synthase subunit al 92.5 0.35 1.2E-05 52.5 9.0 90 174-267 162-265 (513)
383 2pez_A Bifunctional 3'-phospho 92.4 0.065 2.2E-06 50.5 3.1 25 174-198 5-29 (179)
384 1rj9_A FTSY, signal recognitio 92.3 0.068 2.3E-06 55.1 3.3 26 173-198 101-126 (304)
385 3d3q_A TRNA delta(2)-isopenten 92.3 0.066 2.3E-06 55.7 3.1 24 175-198 8-31 (340)
386 2pt7_A CAG-ALFA; ATPase, prote 92.2 0.2 6.7E-06 52.4 6.8 85 175-272 172-256 (330)
387 2f6r_A COA synthase, bifunctio 92.2 0.069 2.4E-06 54.6 3.2 23 173-195 74-96 (281)
388 2i3b_A HCR-ntpase, human cance 92.2 0.058 2E-06 51.3 2.5 24 175-198 2-25 (189)
389 1zak_A Adenylate kinase; ATP:A 92.1 0.059 2E-06 53.0 2.5 25 174-198 5-29 (222)
390 2onk_A Molybdate/tungstate ABC 92.1 0.075 2.5E-06 52.8 3.2 26 172-198 23-48 (240)
391 3k1j_A LON protease, ATP-depen 92.1 0.14 4.7E-06 58.8 5.9 44 153-198 41-84 (604)
392 1vht_A Dephospho-COA kinase; s 92.1 0.081 2.8E-06 51.7 3.5 23 174-196 4-26 (218)
393 1m7g_A Adenylylsulfate kinase; 92.1 0.07 2.4E-06 51.9 3.0 27 172-198 23-49 (211)
394 3nwj_A ATSK2; P loop, shikimat 92.1 0.059 2E-06 53.8 2.5 25 174-198 48-72 (250)
395 1np6_A Molybdopterin-guanine d 92.0 0.079 2.7E-06 49.6 3.1 25 174-198 6-30 (174)
396 3end_A Light-independent proto 91.9 0.11 3.9E-06 53.8 4.5 43 171-216 38-80 (307)
397 3p32_A Probable GTPase RV1496/ 91.9 0.21 7.2E-06 52.9 6.6 37 162-198 65-103 (355)
398 3tif_A Uncharacterized ABC tra 91.8 0.088 3E-06 52.1 3.4 27 172-198 29-55 (235)
399 2ehv_A Hypothetical protein PH 91.8 0.076 2.6E-06 53.1 3.0 24 173-196 29-52 (251)
400 3r20_A Cytidylate kinase; stru 91.8 0.075 2.6E-06 52.3 2.8 25 174-198 9-33 (233)
401 3lnc_A Guanylate kinase, GMP k 91.8 0.054 1.8E-06 53.6 1.8 25 174-198 27-52 (231)
402 3ake_A Cytidylate kinase; CMP 91.8 0.08 2.7E-06 51.2 3.0 23 176-198 4-26 (208)
403 2pcj_A ABC transporter, lipopr 91.8 0.076 2.6E-06 52.2 2.8 26 173-198 29-54 (224)
404 2qe7_A ATP synthase subunit al 91.7 0.26 9E-06 53.6 7.1 98 165-267 152-265 (502)
405 1sq5_A Pantothenate kinase; P- 91.7 0.088 3E-06 54.6 3.3 26 173-198 79-104 (308)
406 2r9v_A ATP synthase subunit al 91.6 0.21 7.1E-06 54.4 6.2 98 165-267 165-278 (515)
407 3sr0_A Adenylate kinase; phosp 91.6 0.084 2.9E-06 51.0 2.8 23 176-198 2-24 (206)
408 3b9q_A Chloroplast SRP recepto 91.6 0.095 3.3E-06 54.0 3.4 26 173-198 99-124 (302)
409 2cbz_A Multidrug resistance-as 91.5 0.1 3.5E-06 51.8 3.4 27 172-198 29-55 (237)
410 3crm_A TRNA delta(2)-isopenten 91.4 0.091 3.1E-06 54.3 3.1 24 175-198 6-29 (323)
411 3a8t_A Adenylate isopentenyltr 91.4 0.097 3.3E-06 54.2 3.3 25 174-198 40-64 (339)
412 2yhs_A FTSY, cell division pro 91.4 0.16 5.5E-06 55.4 5.1 43 173-219 292-334 (503)
413 3gfo_A Cobalt import ATP-bindi 91.3 0.093 3.2E-06 53.2 3.0 26 173-198 33-58 (275)
414 3exa_A TRNA delta(2)-isopenten 91.3 0.1 3.4E-06 53.4 3.2 25 174-198 3-27 (322)
415 1e4v_A Adenylate kinase; trans 91.3 0.086 3E-06 51.4 2.7 23 176-198 2-24 (214)
416 2xb4_A Adenylate kinase; ATP-b 91.3 0.09 3.1E-06 51.6 2.8 23 176-198 2-24 (223)
417 3be4_A Adenylate kinase; malar 91.3 0.087 3E-06 51.5 2.6 24 175-198 6-29 (217)
418 1b0u_A Histidine permease; ABC 91.3 0.11 3.7E-06 52.4 3.4 27 172-198 30-56 (262)
419 1ji0_A ABC transporter; ATP bi 91.2 0.1 3.5E-06 51.9 3.0 26 173-198 31-56 (240)
420 1ak2_A Adenylate kinase isoenz 91.2 0.11 3.7E-06 51.5 3.2 24 175-198 17-40 (233)
421 4g1u_C Hemin import ATP-bindin 91.2 0.1 3.4E-06 52.8 3.0 26 173-198 36-61 (266)
422 1sgw_A Putative ABC transporte 91.2 0.087 3E-06 51.2 2.4 26 173-198 34-59 (214)
423 2pze_A Cystic fibrosis transme 91.1 0.1 3.5E-06 51.4 3.0 26 173-198 33-58 (229)
424 4eaq_A DTMP kinase, thymidylat 91.1 0.19 6.6E-06 49.4 5.0 26 173-198 25-50 (229)
425 3b85_A Phosphate starvation-in 91.1 0.075 2.6E-06 51.4 1.9 24 174-197 22-45 (208)
426 3gqb_B V-type ATP synthase bet 91.1 0.14 4.9E-06 54.9 4.2 93 174-267 147-262 (464)
427 2olj_A Amino acid ABC transpor 91.1 0.12 3.9E-06 52.2 3.4 27 172-198 48-74 (263)
428 1g6h_A High-affinity branched- 91.1 0.1 3.6E-06 52.4 3.0 26 173-198 32-57 (257)
429 3mfy_A V-type ATP synthase alp 91.1 0.38 1.3E-05 52.7 7.5 57 165-226 217-275 (588)
430 2c61_A A-type ATP synthase non 91.1 0.19 6.6E-06 54.3 5.2 103 165-267 142-260 (469)
431 2ff7_A Alpha-hemolysin translo 91.0 0.11 3.7E-06 51.9 3.0 26 173-198 34-59 (247)
432 1a7j_A Phosphoribulokinase; tr 91.0 0.06 2.1E-06 55.2 1.2 26 173-198 4-29 (290)
433 2d2e_A SUFC protein; ABC-ATPas 91.0 0.11 3.7E-06 52.0 3.0 25 173-197 28-52 (250)
434 1mv5_A LMRA, multidrug resista 90.9 0.13 4.4E-06 51.3 3.5 27 172-198 26-52 (243)
435 1zu4_A FTSY; GTPase, signal re 90.8 0.14 4.9E-06 53.1 3.9 26 173-198 104-129 (320)
436 1pgv_A TMD-1, tropomodulin TMD 90.8 0.41 1.4E-05 45.4 6.7 107 521-629 41-169 (197)
437 2vp4_A Deoxynucleoside kinase; 90.8 0.13 4.5E-06 50.7 3.4 25 173-197 19-43 (230)
438 1vpl_A ABC transporter, ATP-bi 90.8 0.13 4.4E-06 51.6 3.4 27 172-198 39-65 (256)
439 2v3c_C SRP54, signal recogniti 90.7 0.1 3.6E-06 56.6 2.8 25 174-198 99-123 (432)
440 2ghi_A Transport protein; mult 90.7 0.13 4.5E-06 51.7 3.4 27 172-198 44-70 (260)
441 3cmw_A Protein RECA, recombina 90.7 0.4 1.4E-05 60.5 8.2 87 173-267 382-472 (1706)
442 1cr0_A DNA primase/helicase; R 90.7 0.23 8E-06 51.1 5.4 52 173-228 34-85 (296)
443 1oix_A RAS-related protein RAB 90.7 0.12 4E-06 49.4 2.8 25 174-198 29-53 (191)
444 2qi9_C Vitamin B12 import ATP- 90.6 0.12 4.2E-06 51.5 3.0 26 173-198 25-50 (249)
445 2og2_A Putative signal recogni 90.6 0.13 4.5E-06 54.2 3.4 26 173-198 156-181 (359)
446 2ixe_A Antigen peptide transpo 90.6 0.14 4.7E-06 52.0 3.4 27 172-198 43-69 (271)
447 3foz_A TRNA delta(2)-isopenten 90.6 0.13 4.3E-06 52.6 3.1 25 174-198 10-34 (316)
448 3io3_A DEHA2D07832P; chaperone 90.5 0.24 8.1E-06 52.1 5.3 49 169-218 13-61 (348)
449 3cmu_A Protein RECA, recombina 90.5 0.46 1.6E-05 60.7 8.7 87 173-267 382-472 (2050)
450 2zu0_C Probable ATP-dependent 90.5 0.14 4.7E-06 51.8 3.4 26 172-197 44-69 (267)
451 2dyk_A GTP-binding protein; GT 90.5 0.14 4.9E-06 46.8 3.2 24 175-198 2-25 (161)
452 2nq2_C Hypothetical ABC transp 90.5 0.13 4.3E-06 51.6 3.0 26 173-198 30-55 (253)
453 2wji_A Ferrous iron transport 90.5 0.14 4.7E-06 47.4 3.1 23 175-197 4-26 (165)
454 3hjn_A DTMP kinase, thymidylat 90.5 0.45 1.5E-05 45.5 6.8 23 176-198 2-24 (197)
455 2zej_A Dardarin, leucine-rich 90.4 0.12 4.1E-06 48.8 2.7 22 176-197 4-25 (184)
456 2yz2_A Putative ABC transporte 90.4 0.14 4.9E-06 51.7 3.4 27 172-198 31-57 (266)
457 2ihy_A ABC transporter, ATP-bi 90.4 0.13 4.4E-06 52.3 3.0 26 173-198 46-71 (279)
458 3f9v_A Minichromosome maintena 90.4 0.13 4.3E-06 58.7 3.3 46 153-198 295-351 (595)
459 2v9p_A Replication protein E1; 90.4 0.14 4.9E-06 52.5 3.3 27 172-198 124-150 (305)
460 1ltq_A Polynucleotide kinase; 90.3 0.13 4.5E-06 53.1 3.1 23 175-197 3-25 (301)
461 1yrb_A ATP(GTP)binding protein 90.3 0.14 5E-06 51.5 3.4 26 173-198 13-38 (262)
462 1fx0_A ATP synthase alpha chai 90.3 0.2 6.7E-06 54.6 4.5 88 175-267 164-266 (507)
463 3zvl_A Bifunctional polynucleo 90.3 0.15 5.1E-06 55.4 3.6 27 172-198 256-282 (416)
464 2qmh_A HPR kinase/phosphorylas 90.3 0.13 4.6E-06 48.6 2.8 24 175-198 35-58 (205)
465 2ged_A SR-beta, signal recogni 90.3 0.25 8.7E-06 46.8 4.9 26 173-198 47-72 (193)
466 3lv8_A DTMP kinase, thymidylat 90.2 0.28 9.5E-06 48.3 5.2 37 174-212 27-63 (236)
467 2eyu_A Twitching motility prot 90.2 0.16 5.5E-06 51.1 3.5 110 172-294 23-133 (261)
468 3iqw_A Tail-anchored protein t 90.1 0.29 9.9E-06 51.1 5.5 49 169-220 11-59 (334)
469 2ck3_A ATP synthase subunit al 90.1 0.39 1.3E-05 52.4 6.5 102 165-267 152-273 (510)
470 1q3t_A Cytidylate kinase; nucl 90.1 0.16 5.5E-06 50.3 3.4 26 173-198 15-40 (236)
471 2f9l_A RAB11B, member RAS onco 90.1 0.14 4.7E-06 49.2 2.8 24 175-198 6-29 (199)
472 4edh_A DTMP kinase, thymidylat 90.0 0.36 1.2E-05 46.8 5.7 32 174-207 6-37 (213)
473 4tmk_A Protein (thymidylate ki 90.0 0.32 1.1E-05 47.1 5.3 52 175-228 4-55 (213)
474 1cp2_A CP2, nitrogenase iron p 89.9 0.25 8.6E-06 49.9 4.8 38 175-215 2-39 (269)
475 1nlf_A Regulatory protein REPA 89.8 0.14 4.9E-06 52.2 2.8 26 173-198 29-54 (279)
476 1p5z_B DCK, deoxycytidine kina 89.7 0.18 6E-06 51.0 3.4 26 173-198 23-48 (263)
477 1svm_A Large T antigen; AAA+ f 89.6 0.18 6E-06 53.6 3.4 27 172-198 167-193 (377)
478 3cmw_A Protein RECA, recombina 89.6 0.53 1.8E-05 59.4 8.0 86 174-267 1431-1520(1706)
479 2pjz_A Hypothetical protein ST 89.6 0.16 5.6E-06 51.0 3.0 24 174-197 30-53 (263)
480 1moz_A ARL1, ADP-ribosylation 89.6 0.22 7.5E-06 46.7 3.8 35 163-197 6-41 (183)
481 2e87_A Hypothetical protein PH 89.6 11 0.00039 39.4 17.6 26 173-198 166-191 (357)
482 2r8r_A Sensor protein; KDPD, P 89.6 0.25 8.7E-06 47.8 4.1 40 176-218 8-47 (228)
483 4gzl_A RAS-related C3 botulinu 89.4 0.18 6.1E-06 48.6 3.1 42 157-198 13-54 (204)
484 1g8f_A Sulfate adenylyltransfe 89.4 0.25 8.7E-06 54.5 4.5 43 156-198 375-419 (511)
485 2ce2_X GTPase HRAS; signaling 89.4 0.16 5.5E-06 46.6 2.6 23 176-198 5-27 (166)
486 2wjg_A FEOB, ferrous iron tran 89.4 0.19 6.3E-06 47.6 3.1 23 175-197 8-30 (188)
487 3nh6_A ATP-binding cassette SU 89.4 0.16 5.5E-06 52.3 2.8 27 172-198 78-104 (306)
488 1z2a_A RAS-related protein RAB 89.3 0.18 6.1E-06 46.5 2.8 24 175-198 6-29 (168)
489 3sop_A Neuronal-specific septi 89.2 0.17 6E-06 51.1 2.8 23 176-198 4-26 (270)
490 1fzq_A ADP-ribosylation factor 89.1 0.25 8.5E-06 46.5 3.8 25 173-197 15-39 (181)
491 3con_A GTPase NRAS; structural 89.1 0.18 6.2E-06 47.7 2.8 23 176-198 23-45 (190)
492 3gmt_A Adenylate kinase; ssgci 89.0 0.17 6E-06 49.3 2.6 24 175-198 9-32 (230)
493 2nzj_A GTP-binding protein REM 89.0 0.19 6.4E-06 46.8 2.7 24 175-198 5-28 (175)
494 1zj6_A ADP-ribosylation factor 88.9 0.34 1.2E-05 45.7 4.6 34 163-197 6-39 (187)
495 2ocp_A DGK, deoxyguanosine kin 88.9 0.2 7E-06 49.7 3.2 24 175-198 3-26 (241)
496 2bbs_A Cystic fibrosis transme 88.9 0.21 7.1E-06 51.1 3.2 27 172-198 62-88 (290)
497 3eph_A TRNA isopentenyltransfe 88.9 0.18 6.1E-06 53.5 2.8 24 175-198 3-26 (409)
498 1tq4_A IIGP1, interferon-induc 88.9 0.25 8.5E-06 53.1 3.9 26 172-197 67-92 (413)
499 2afh_E Nitrogenase iron protei 88.8 0.28 9.7E-06 50.2 4.2 39 174-215 2-40 (289)
500 3vr4_A V-type sodium ATPase ca 88.8 0.59 2E-05 51.5 6.8 57 165-226 222-280 (600)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.3e-45 Score=424.60 Aligned_cols=301 Identities=15% Similarity=0.135 Sum_probs=239.6
Q ss_pred cchhhHHHHHHHhhccC---CceEEEEEcCCCChHHHHhhhhhh--ccccccCCCCEEEEEEeCCCC--CHHHHHHHHHH
Q 038405 156 VGADSKLDEVWGCIEDQ---SEQTIGLYGMGGVGKITLLKKPNN--KFLDVNHCFDLVIFVAVSKEG--NLEKIQEVIRK 228 (863)
Q Consensus 156 vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~ 228 (863)
|||++++++|.++|... ..++|+|+||||+||||||+++|+ +. .++.+|+.++||++++.+ +...++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999643 689999999999999999999998 34 457899999999999985 89999999999
Q ss_pred HcCCCcc--c---ccccChhhHHHHHHHHhccC-cEEEEEcccccccccccccccCCCCCCCeEEEEeecchhhh-----
Q 038405 229 KLDISDY--I---WNMKGEYDRAVEILISLRRK-KFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVC----- 297 (863)
Q Consensus 229 ~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~~v~----- 297 (863)
+++.... . ....+...+...+++.|+++ ||||||||||+..++ .+. ..+||+||||||++.++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCS
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCC
Confidence 9986531 1 11224456788999999996 999999999997654 111 12799999999998886
Q ss_pred ------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHhCCCChhhHHHHHHHHhcCCC
Q 038405 298 ------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMSSRRSPREWQYVIDELQRNPS 371 (863)
Q Consensus 298 ------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~ 371 (863)
+++|+.+|||+||.+.++... .++.+.+++++|+++|+|+||||+++|+.|+.+ .|+.+ +.+....+
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~~l~ 356 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNNKLE 356 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHHHHH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHHHhh
Confidence 788999999999999987653 246778899999999999999999999998763 25443 33332211
Q ss_pred ccCCCCccccchhhcccCCCChhhHhHHhh-----------hhcCCCCCCccchHHHHHHHHhc--CCCCCccchhHHhh
Q 038405 372 RFAGMGNLVFPILRFSYDNLTDDTLKTCFL-----------YCSLFPEENNIRKDELIDLWIGE--GFLSDFRSITTARN 438 (863)
Q Consensus 372 ~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~~~Fp~~~~i~~~~Li~~wiae--g~i~~~~~~~~~~~ 438 (863)
.. ..+.+.+++.+||+.||++ +|.||+ |||+||+++.|+ +++|+|+ ||+.........++
T Consensus 357 ~~--~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~ 429 (549)
T 2a5y_B 357 SR--GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDE 429 (549)
T ss_dssp HH--CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHH
T ss_pred cc--cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHH
Confidence 11 1246899999999999996 999999 999999999999 8999999 99986532344556
Q ss_pred hHHHHHHHHHHhcccccCCC-CCCeEEechHHHHHHHHhhh
Q 038405 439 QGEYIIGSLKLACLLESGEY-SEDFVKMHDVVRDMALWLAS 478 (863)
Q Consensus 439 ~~~~~~~~L~~~~ll~~~~~-~~~~~~mHdlv~d~~~~i~~ 478 (863)
.++ ++++|+++||++.... ....|+|||+||++|++++.
T Consensus 430 ~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~ 469 (549)
T 2a5y_B 430 VAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVD 469 (549)
T ss_dssp HHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSC
T ss_pred HHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHH
Confidence 666 9999999999997642 35689999999999998875
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.3e-38 Score=367.64 Aligned_cols=277 Identities=17% Similarity=0.190 Sum_probs=222.5
Q ss_pred cccchhhHHHHHHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCE-EEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 154 KTVGADSKLDEVWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDL-VIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
..|||++++++|.++|.+ +..++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..|.+.++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 359999999999999965 568999999999999999999999875 45678875 999999999998888888777542
Q ss_pred CCc---c-cc-----cccChhhHHHHHHHHh---ccCcEEEEEcccccccccccccccCCCCCCCeEEEEeecchhhh--
Q 038405 232 ISD---Y-IW-----NMKGEYDRAVEILISL---RRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVC-- 297 (863)
Q Consensus 232 ~~~---~-~~-----~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~~v~-- 297 (863)
... . .. ...+.+.....+++.| .+||+||||||||+...|..+ + +||+||||||++.++
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~---pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N---LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H---SSCCEEEECSCSHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----C---CCeEEEEeccChHHHHh
Confidence 110 0 00 0112344556677666 679999999999998877754 2 689999999999876
Q ss_pred --------cc------cCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHhCCC-ChhhHHHH
Q 038405 298 --------VE------CLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMSSRR-SPREWQYV 362 (863)
Q Consensus 298 --------l~------~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~-~~~~w~~~ 362 (863)
++ +|+.+|||+||....+.. ..++..+| |+|+||||+++|+.|+.+. +...|+..
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~ 350 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV 350 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC
Confidence 55 899999999999985322 12334444 9999999999999999863 67788653
Q ss_pred HHHHhcCCCccCCCCccccchhhcccCCCChhhH-hHHhhhhcCCCCCCccchHHHHHHHHhcCCCCCccchhHHhhhHH
Q 038405 363 IDELQRNPSRFAGMGNLVFPILRFSYDNLTDDTL-KTCFLYCSLFPEENNIRKDELIDLWIGEGFLSDFRSITTARNQGE 441 (863)
Q Consensus 363 ~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~ 441 (863)
..+.+..+|.+||+.||++ . |.||+|||+||+++.|+++.++.+|+++| ++.+.
T Consensus 351 -------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe 405 (1221)
T 1vt4_I 351 -------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVM 405 (1221)
T ss_dssp -------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHH
T ss_pred -------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHH
Confidence 1247999999999999997 8 99999999999999999999999998887 12477
Q ss_pred HHHHHHHHhcccccCCCCCCeEEechHHHHHHH
Q 038405 442 YIIGSLKLACLLESGEYSEDFVKMHDVVRDMAL 474 (863)
Q Consensus 442 ~~~~~L~~~~ll~~~~~~~~~~~mHdlv~d~~~ 474 (863)
.++++|+++||++... ...+|+|||++++++.
T Consensus 406 ~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 8899999999999853 2678999999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3e-37 Score=394.35 Aligned_cols=303 Identities=21% Similarity=0.275 Sum_probs=243.4
Q ss_pred cCCccccchhhHHHHHHHhhc--cCCceEEEEEcCCCChHHHHhhhhhhccccccC-CCCEEEEEEeCCCCC--HHHHHH
Q 038405 150 MATEKTVGADSKLDEVWGCIE--DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNH-CFDLVIFVAVSKEGN--LEKIQE 224 (863)
Q Consensus 150 ~~~~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~F~~~~wv~~~~~~~--~~~~~~ 224 (863)
.+.+.||||++++++|.++|. +++.++|+|+||||+||||||+++|++...... .|+.++||++++..+ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 344679999999999999995 467899999999999999999999998522244 457888999998654 344466
Q ss_pred HHHHHcCCCccc--ccccChhhHHHHHHHHhccC--cEEEEEcccccccccccccccCCCCCCCeEEEEeecchhhh---
Q 038405 225 VIRKKLDISDYI--WNMKGEYDRAVEILISLRRK--KFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVC--- 297 (863)
Q Consensus 225 ~i~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~~v~--- 297 (863)
.++..+...... ....+.++....++..+.++ |+||||||||+..+|..+ ++||+||||||++.++
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 677776544311 12345677788888888877 999999999998777654 5789999999999876
Q ss_pred --------cc-cCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHhCCCChhhHHHHHHHHhc
Q 038405 298 --------VE-CLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMSSRRSPREWQYVIDELQR 368 (863)
Q Consensus 298 --------l~-~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~ 368 (863)
+. +|+.+||++||...++.. .+...+.+++|+++|+|+||||+++|++|+.+. ..|+.+++.+..
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQN 347 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHS
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhh
Confidence 55 499999999999988543 234567899999999999999999999998743 579999999876
Q ss_pred CCCcc-CC----CCccccchhhcccCCCChhhHhHHhhhhcCCCCCCccchHHHHHHHHhcCCCCCccchhHHhhhHHHH
Q 038405 369 NPSRF-AG----MGNLVFPILRFSYDNLTDDTLKTCFLYCSLFPEENNIRKDELIDLWIGEGFLSDFRSITTARNQGEYI 443 (863)
Q Consensus 369 ~~~~~-~~----~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~ 443 (863)
..... .. ..+.+..++.+||+.||++ .|.||+|||+||+++.|+++.++.+|.++ ++.++.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~ 414 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDI 414 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHH
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHH
Confidence 64321 11 1135889999999999996 99999999999999999999999999553 3567788
Q ss_pred HHHHHHhcccccCCC-CCCeEEechHHHHHHHHhhh
Q 038405 444 IGSLKLACLLESGEY-SEDFVKMHDVVRDMALWLAS 478 (863)
Q Consensus 444 ~~~L~~~~ll~~~~~-~~~~~~mHdlv~d~~~~i~~ 478 (863)
+++|+++||++.... ...+|+||+++|++++..+.
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~ 450 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNR 450 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTG
T ss_pred HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhh
Confidence 999999999987643 23469999999999998865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=335.81 Aligned_cols=298 Identities=21% Similarity=0.307 Sum_probs=232.3
Q ss_pred CccccchhhHHHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhccccc-cCCC-CEEEEEEeCCCCCHHHHHHHH-
Q 038405 152 TEKTVGADSKLDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKFLDV-NHCF-DLVIFVAVSKEGNLEKIQEVI- 226 (863)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~~~i- 226 (863)
.+.||||+.++++|.++|.. ++.++|+|+||||+||||||++++++. .. ..+| +.++|++++.. +...+...+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 35799999999999999963 568999999999999999999999875 33 5678 58999999876 333443333
Q ss_pred --HHHcCCCc--ccccccChhhHHHHHHHHhcc--CcEEEEEcccccccccccccccCCCCCCCeEEEEeecchhhh---
Q 038405 227 --RKKLDISD--YIWNMKGEYDRAVEILISLRR--KKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSEEVC--- 297 (863)
Q Consensus 227 --~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~~v~--- 297 (863)
...++... ......+.+.....+...+.+ +++||||||||+...+..+ .+|++||||||++.++
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 34444211 011234566777788888876 7999999999987655432 4689999999999865
Q ss_pred ---------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHhCCCChhhHHHHHHHHhc
Q 038405 298 ---------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMSSRRSPREWQYVIDELQR 368 (863)
Q Consensus 298 ---------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~ 368 (863)
+++|+.+||++||...++... +...+.+.+|+++|+|+||||+.+|+.++.. ...|..+++.+..
T Consensus 274 ~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~ 347 (591)
T 1z6t_A 274 MGPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQN 347 (591)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHS
T ss_pred CCCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHH
Confidence 258999999999999987532 1224678999999999999999999999874 3479999998876
Q ss_pred CCCc-c----CCCCccccchhhcccCCCChhhHhHHhhhhcCCCCCCccchHHHHHHHHhcCCCCCccchhHHhhhHHHH
Q 038405 369 NPSR-F----AGMGNLVFPILRFSYDNLTDDTLKTCFLYCSLFPEENNIRKDELIDLWIGEGFLSDFRSITTARNQGEYI 443 (863)
Q Consensus 369 ~~~~-~----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~~~ 443 (863)
.... . ......+..++..||+.||++ .|.||++||+||+++.|+.+.+...|.++ .+.+..+
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~ 414 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDI 414 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHH
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHH
Confidence 5321 1 111236888999999999996 99999999999999999999999999542 2346778
Q ss_pred HHHHHHhcccccCCC-CCCeEEechHHHHHHHHhh
Q 038405 444 IGSLKLACLLESGEY-SEDFVKMHDVVRDMALWLA 477 (863)
Q Consensus 444 ~~~L~~~~ll~~~~~-~~~~~~mHdlv~d~~~~i~ 477 (863)
+++|+++||++.... ...+|+||+++|++++...
T Consensus 415 l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 415 LQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 999999999986432 2357999999999998773
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.6e-23 Score=227.81 Aligned_cols=286 Identities=17% Similarity=0.207 Sum_probs=207.0
Q ss_pred cccccceEEEeccCCccccCCCC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceee
Q 038405 497 DSWREDFRLSLWGSSIEYLPETP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLN 575 (863)
Q Consensus 497 ~~~~~~~~l~l~~~~~~~l~~~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 575 (863)
..++.++++.+.++.+..++... +++|++|++++|.+..++. +..+++|++|++++| .+..+| .++++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 34567889999999888887755 8999999999998888877 788999999999999 777776 488999999999
Q ss_pred ccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhccccee
Q 038405 576 LSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYE 655 (863)
Q Consensus 576 L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~ 655 (863)
+++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++.+|.+..... ......++.|....|.+
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l-- 189 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI-- 189 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC--
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc--
Confidence 99999998887 88999999999999976666554 7899999999999877544322 11223333333333222
Q ss_pred eEEeecCchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecC
Q 038405 656 ISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVC 735 (863)
Q Consensus 656 l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~ 735 (863)
..+.. ...+++|+.|++++|.......+..+++|++|++++|.+..+++ +..+++|+.|++++|
T Consensus 190 --------~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 190 --------EDISP----LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTN 253 (347)
T ss_dssp --------CCCGG----GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred --------ccccc----ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCC
Confidence 22221 23456788888888877666557788888888888888776643 346788888888888
Q ss_pred CCCCCCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEeeccC
Q 038405 736 PVIRDLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNC 815 (863)
Q Consensus 736 ~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C 815 (863)
. +..++.+..+++|+.|++++|.. ..++ ....+++|+.|++++++--...+.....+++|+.|++++|
T Consensus 254 ~-l~~~~~~~~l~~L~~L~l~~n~l-~~~~----------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 254 Q-ISDINAVKDLTKLKMLNVGSNQI-SDIS----------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp C-CCCCGGGTTCTTCCEEECCSSCC-CCCG----------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred c-cCCChhHhcCCCcCEEEccCCcc-CCCh----------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 4 44556778888888888888853 2221 3456788888888877432222233445788888888887
Q ss_pred CCCCCCC
Q 038405 816 PNLRELP 822 (863)
Q Consensus 816 ~~L~~lp 822 (863)
+ ++.++
T Consensus 322 ~-l~~~~ 327 (347)
T 4fmz_A 322 H-ITDIR 327 (347)
T ss_dssp S-CCCCG
T ss_pred c-ccccc
Confidence 5 55554
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=9.5e-24 Score=247.96 Aligned_cols=132 Identities=21% Similarity=0.186 Sum_probs=113.5
Q ss_pred ccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceee
Q 038405 500 REDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLN 575 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~ 575 (863)
..++.+++.+|.+..++... +++|++|++++|.+..+++..|.++++|++|+|++| .+..+ |..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEE
Confidence 67899999999998887643 899999999999999998877899999999999999 56655 88899999999999
Q ss_pred ccCCCccccc-hhhhcccCccEEecCCCCCcc-ccchhhhcCCCCCceeeccCcchhhhc
Q 038405 576 LSNTSIEELP-SEIMYLKNLKILLLDGMRHFH-LIPARVFSSLLSLKVFSLFSTELIELH 633 (863)
Q Consensus 576 L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~ 633 (863)
+++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+....
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEEC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecC
Confidence 9999999887 669999999999999998433 46776 899999999999998765543
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.6e-23 Score=229.85 Aligned_cols=287 Identities=16% Similarity=0.159 Sum_probs=199.6
Q ss_pred ccccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccce
Q 038405 498 SWREDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRC 573 (863)
Q Consensus 498 ~~~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~ 573 (863)
....++.+.+.++.+..+|... +++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 3467888999999888888753 889999999999888888877889999999999999 56655 455789999999
Q ss_pred eeccCCCccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhccc
Q 038405 574 LNLSNTSIEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQ 652 (863)
Q Consensus 574 L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~ 652 (863)
|++++|.+..+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+.... ......++.|....|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccc
Confidence 99999999999887 4889999999999987 56666555889999999999988765432 1122333333333333
Q ss_pred ceeeEEeecCchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEE
Q 038405 653 IYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSI 732 (863)
Q Consensus 653 L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L 732 (863)
+..++ ....|+.|++++|...... ...+++|+.|++++|.+.+.+ .+..+++|+.|++
T Consensus 198 l~~~~-----------------~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L 255 (390)
T 3o6n_A 198 LSTLA-----------------IPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTDTA----WLLNYPGLVEVDL 255 (390)
T ss_dssp CSEEE-----------------CCSSCSEEECCSSCCCEEE-CCCCSSCCEEECCSSCCCCCG----GGGGCTTCSEEEC
T ss_pred ccccC-----------------CCCcceEEECCCCeeeecc-ccccccccEEECCCCCCcccH----HHcCCCCccEEEC
Confidence 33221 2235777777776654432 233467777777777766543 2346777777777
Q ss_pred ecCCCCCCC-cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEe
Q 038405 733 RVCPVIRDL-TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVS 811 (863)
Q Consensus 733 ~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~ 811 (863)
++|...... ..+..+++|+.|+|++|.. ..++ .....+++|+.|+++++ .++.++.....+++|+.|+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~---------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNRL-VALN---------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY 324 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEE---------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEE
T ss_pred CCCcCCCcChhHccccccCCEEECCCCcC-cccC---------cccCCCCCCCEEECCCC-cceecCccccccCcCCEEE
Confidence 777544332 3566777777777777753 2232 22345777777777776 4556655555567777777
Q ss_pred eccCCCCCCCCC
Q 038405 812 VTNCPNLRELPF 823 (863)
Q Consensus 812 i~~C~~L~~lp~ 823 (863)
+++|+ ++.+|+
T Consensus 325 L~~N~-i~~~~~ 335 (390)
T 3o6n_A 325 LDHNS-IVTLKL 335 (390)
T ss_dssp CCSSC-CCCCCC
T ss_pred CCCCc-cceeCc
Confidence 77764 566654
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.6e-22 Score=241.25 Aligned_cols=332 Identities=14% Similarity=0.117 Sum_probs=245.8
Q ss_pred ccccccceEEEeccCCccc------------------cCCCC----CCCccEEEeecccc-cccchhhhhcCCCccEEec
Q 038405 496 ADSWREDFRLSLWGSSIEY------------------LPETP----CPHLQTLLVRFTVL-EIFPHRFFESMGALKVLDL 552 (863)
Q Consensus 496 ~~~~~~~~~l~l~~~~~~~------------------l~~~~----~~~Lr~L~l~~~~l-~~l~~~~~~~l~~L~~L~L 552 (863)
...+.+++.|.+.+|.+.. +|... +++|++|++++|.+ ..+| ..+.++++|++|+|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEEC
Confidence 4556789999999999987 77763 78999999999965 4555 45899999999999
Q ss_pred cCCcCcc--ccchhhhccc-------ccceeeccCCCccccch--hhhcccCccEEecCCCCCccccchhhhcCCCCCce
Q 038405 553 SYNLDLT--QLPAEMGALI-------NLRCLNLSNTSIEELPS--EIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKV 621 (863)
Q Consensus 553 s~~~~i~--~lp~~i~~L~-------~L~~L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 621 (863)
++|..+. .+|..++++. +|++|++++|.+..+|. .++++++|++|++++|. +..+| . ++++++|++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCcceE
Confidence 9994255 5899888877 99999999999999999 89999999999999998 55888 4 899999999
Q ss_pred eeccCcchhhhccCCCCcccc-chhhhhhcccceeeEEeecCchh--hhhhhcccc----------------ccccccEE
Q 038405 622 FSLFSTELIELHRMPPNQTTI-LDELECLGNQIYEISITLGSASA--LFKINFSWK----------------LCSCIKRL 682 (863)
Q Consensus 622 L~l~~~~~~~~~~~~~~~~~~-l~~L~~l~n~L~~l~~~~~~~~~--l~~l~~~~~----------------~~~~L~~L 682 (863)
|++++|.+..++ ........ |+.|....|.+..++..+..... +..+..+.+ .+.+|+.|
T Consensus 600 L~Ls~N~l~~lp-~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 600 LKLDYNQIEEIP-EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp EECCSSCCSCCC-TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred EECcCCccccch-HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 999999877443 33335555 77777777777655533322211 222222211 22378999
Q ss_pred EecccCCccccc--ccccCCcceeEeccCcccccCCCCCC-----CCCCCCCCEEEEecCCCCCCCcccc--cCCCcceE
Q 038405 683 TIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNG-----WTNFHNLHHLSIRVCPVIRDLTWIR--EAPNLQFL 753 (863)
Q Consensus 683 ~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~-----~~~l~~L~~L~L~~~~~~~~l~~l~--~l~~L~~L 753 (863)
++++|.....+. +..+++|+.|++++|.+..++..... ..++++|+.|+|++|.....+..+. .+++|+.|
T Consensus 679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758 (876)
T ss_dssp ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEE
T ss_pred EccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEE
Confidence 999988775443 45789999999999998876543211 1234499999999996654444565 89999999
Q ss_pred eeccCcchhhhhcccCCccccccCccCcccceecccccc------cccccccCccCCCCccEEeeccCCCCCCCCCCCCC
Q 038405 754 SLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLP------SLKRICHGTMPFPSLQNVSVTNCPNLRELPFNFDS 827 (863)
Q Consensus 754 ~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~------~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~ 827 (863)
+|++|... .+|. ....+++|+.|+|++++ -...++.....+++|+.|++++|. +..+|....
T Consensus 759 ~Ls~N~L~-~lp~---------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~- 826 (876)
T 4ecn_A 759 DVSYNCFS-SFPT---------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT- 826 (876)
T ss_dssp ECCSSCCS-SCCC---------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-
T ss_pred EeCCCCCC-ccch---------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc-
Confidence 99999753 3443 45578999999997733 344566666678999999999985 588997643
Q ss_pred CCCcceEEEchHhhhhcCc
Q 038405 828 AKNSLVSIRGSAEWWEQLQ 846 (863)
Q Consensus 828 ~~~~l~~i~~~~~~~~~l~ 846 (863)
.+|..+.-+.+.+..+.
T Consensus 827 --~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 827 --PQLYILDIADNPNISID 843 (876)
T ss_dssp --SSSCEEECCSCTTCEEE
T ss_pred --CCCCEEECCCCCCCccC
Confidence 57777777666555444
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=2.9e-22 Score=227.89 Aligned_cols=292 Identities=20% Similarity=0.197 Sum_probs=180.6
Q ss_pred EEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCCcc
Q 038405 504 RLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTSIE 582 (863)
Q Consensus 504 ~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~ 582 (863)
.+...++.+..+|....+++++|++++|.+..+++..|..+++|++|+|++| .+..+ |..++++++|++|+|++|.+.
T Consensus 15 ~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCC
Confidence 4555566667777666677888888888777777666777888888888887 55544 667778888888888888887
Q ss_pred ccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeec
Q 038405 583 ELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLG 661 (863)
Q Consensus 583 ~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~ 661 (863)
.+|.. +.++++|++|++++|. +..++...+.++++|++|++++|.+..+.+..+.....|+.|....|.+..++
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---- 168 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP---- 168 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC----
T ss_pred ccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC----
Confidence 77765 5778888888888776 44444444777888888888777665554443333344444433333332211
Q ss_pred CchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCc-ccccCCCCCCCCCCCCCCEEEEecCCCC
Q 038405 662 SASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECS-LERVDPTFNGWTNFHNLHHLSIRVCPVI 738 (863)
Q Consensus 662 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~l~~L~~L~L~~~~~~ 738 (863)
. .....+++|+.|++++|....... +..+++|++|++++|. +..++.. .....+|+.|++++|...
T Consensus 169 ------~--~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 169 ------T--EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN---CLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp ------H--HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT---TTTTCCCSEEEEESSCCC
T ss_pred ------h--hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc---cccCccccEEECcCCccc
Confidence 0 112335577777777776654443 6677777788877776 3333322 123447777777777543
Q ss_pred CCC-cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccccccccccc-ccCccCCCCccEEeeccCC
Q 038405 739 RDL-TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRI-CHGTMPFPSLQNVSVTNCP 816 (863)
Q Consensus 739 ~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l-~~~~~~~~~L~~L~i~~C~ 816 (863)
..+ ..+..+++|+.|+|++|.. ..++. .....+++|+.|.|+++ ++..+ +.....+++|+.|++++|
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N- 306 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPI-STIEG--------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN- 306 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCC-CEECT--------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-
T ss_pred ccCHHHhcCccccCeeECCCCcC-CccCh--------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-
Confidence 322 2466777777777777763 22221 23455677777777664 33333 223345666777766664
Q ss_pred CCCCCCC
Q 038405 817 NLRELPF 823 (863)
Q Consensus 817 ~L~~lp~ 823 (863)
+|+.+|.
T Consensus 307 ~l~~~~~ 313 (477)
T 2id5_A 307 QLTTLEE 313 (477)
T ss_dssp CCSCCCG
T ss_pred cCceeCH
Confidence 4555543
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.4e-22 Score=224.07 Aligned_cols=267 Identities=16% Similarity=0.220 Sum_probs=216.2
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhcccccceeeccCCCccccchh-hhcccCccEE
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLNLSNTSIEELPSE-IMYLKNLKIL 597 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L 597 (863)
++++++|.+.++.+..+|..++..+++|++|++++| .+..+| ..++++++|++|++++|.+..+|+. ++++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 789999999999999999999999999999999999 676665 4899999999999999999988654 8999999999
Q ss_pred ecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccc
Q 038405 598 LLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCS 677 (863)
Q Consensus 598 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~ 677 (863)
++++|. +..+|..+++++++|++|++++|.+..+.+........|+.|....|.+..++ ...++
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~l~ 186 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------LSLIP 186 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------------GGGCT
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---------------ccccc
Confidence 999997 77899887799999999999999887665554445556666665555544321 23456
Q ss_pred cccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeecc
Q 038405 678 CIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVN 757 (863)
Q Consensus 678 ~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 757 (863)
+|+.|++++|.... +...++|++|++++|.+..++.. .+++|+.|++++|. +..++++..+++|+.|+|++
T Consensus 187 ~L~~L~l~~n~l~~---~~~~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 187 SLFHANVSYNLLST---LAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSY 257 (390)
T ss_dssp TCSEEECCSSCCSE---EECCSSCSEEECCSSCCCEEECC-----CCSSCCEEECCSSC-CCCCGGGGGCTTCSEEECCS
T ss_pred ccceeecccccccc---cCCCCcceEEECCCCeeeecccc-----ccccccEEECCCCC-CcccHHHcCCCCccEEECCC
Confidence 89999999886543 34567899999999998887543 36899999999995 45568899999999999999
Q ss_pred CcchhhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEeeccCCCCCCCCC
Q 038405 758 CQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNCPNLRELPF 823 (863)
Q Consensus 758 ~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 823 (863)
|......+ .....+++|+.|+++++ +++.++.....+|+|+.|++++| +++.+|.
T Consensus 258 n~l~~~~~---------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 312 (390)
T 3o6n_A 258 NELEKIMY---------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER 312 (390)
T ss_dssp SCCCEEES---------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred CcCCCcCh---------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCc
Confidence 97533322 24567899999999985 67777777778899999999987 4666653
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=230.51 Aligned_cols=325 Identities=17% Similarity=0.163 Sum_probs=172.3
Q ss_pred ccceEEEeccCCccccCCC--C-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeec
Q 038405 500 REDFRLSLWGSSIEYLPET--P-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNL 576 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~--~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 576 (863)
..++++++.+|.+..++.. . +++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 4666777777766665532 1 667777777777666665555667777777777777 56666665 6677777777
Q ss_pred cCCCccc--cchhhhcccCccEEecCCCCCccccchhhhcCCCCC--ceeeccCcch--hhhccCCCCc-----------
Q 038405 577 SNTSIEE--LPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSL--KVFSLFSTEL--IELHRMPPNQ----------- 639 (863)
Q Consensus 577 ~~~~i~~--lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~~--~~~~~~~~~~----------- 639 (863)
++|.+.. +|..++++++|++|++++|. +.. ..+..+++| ++|++.+|.+ ....+.....
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred cCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 7776664 45667777777777777665 222 124555555 6666666554 1111111101
Q ss_pred ---------------cccchhhhhhcc-----------------------------------------------cceeeE
Q 038405 640 ---------------TTILDELECLGN-----------------------------------------------QIYEIS 657 (863)
Q Consensus 640 ---------------~~~l~~L~~l~n-----------------------------------------------~L~~l~ 657 (863)
...++.|....| .++.+.
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 111111111110 122222
Q ss_pred EeecCchhhhhhhccc-----ccccc--------------------------ccEEEecccCCcccccccccCCcceeEe
Q 038405 658 ITLGSASALFKINFSW-----KLCSC--------------------------IKRLTIMHNLDSHSIDLRNMMHLETLNI 706 (863)
Q Consensus 658 ~~~~~~~~l~~l~~~~-----~~~~~--------------------------L~~L~l~~~~~~~~~~l~~~~~L~~L~l 706 (863)
+...... ..++... ..++. |+.|++++|.......+..+++|++|++
T Consensus 254 l~~n~l~--~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 254 ISNVKLQ--GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEE--SCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred eeccccc--CccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 1111000 0000000 11122 3333333333222111255667777777
Q ss_pred ccCcccccCCCCCCCCCCCCCCEEEEecCCCCC--CC-cccccCCCcceEeeccCcchhhhhccc-C----CccccccC-
Q 038405 707 VECSLERVDPTFNGWTNFHNLHHLSIRVCPVIR--DL-TWIREAPNLQFLSLVNCQALSEIIESA-G----SSEVAESH- 777 (863)
Q Consensus 707 ~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~-~----~~~~~~~~- 777 (863)
++|.+.+..+. .+..+++|+.|++++|.... .+ ..++.+++|++|++++|.....+|... . .+.+..+.
T Consensus 332 s~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 332 SNNLLTDTVFE--NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp CSSCCCTTTTT--TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred ECCccChhhhh--hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 77776653222 34466777777777775432 11 235667777777777766443344320 0 00000111
Q ss_pred -------ccC-cccceecccccccccccccCccCCCCccEEeeccCCCCCCCCCCCCCCCCcceEEEc
Q 038405 778 -------NYF-AYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNCPNLRELPFNFDSAKNSLVSIRG 837 (863)
Q Consensus 778 -------~~~-~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~ 837 (863)
..+ ++|+.|+++++ +++.++.....+++|+.|++++| +++.+|........+++.+..
T Consensus 410 ~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 410 ILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp CCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEEC
Confidence 122 57888888776 56677766667899999999997 688888763333456666543
No 12
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=2.1e-22 Score=217.29 Aligned_cols=290 Identities=16% Similarity=0.127 Sum_probs=214.2
Q ss_pred cceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCC
Q 038405 501 EDFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNT 579 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~ 579 (863)
..+.+.+.++.+..+|....+++++|++++|.+..+++..|..+++|++|++++| .+..+ |..++++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCC
Confidence 5678889999999999877899999999999999998877999999999999999 66655 788999999999999999
Q ss_pred CccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhh--hccCCCCccccchhhhhhcccceeeE
Q 038405 580 SIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIE--LHRMPPNQTTILDELECLGNQIYEIS 657 (863)
Q Consensus 580 ~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~L~~l~n~L~~l~ 657 (863)
.+..+|..+. ++|++|++++|. +..+|...+.++++|++|++++|.+.. ..+...... .++.|....|.+..++
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred cCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 9999998776 899999999998 777887779999999999999988753 223332222 5555655555554432
Q ss_pred EeecCchhhhhhhccccccccccEEEecccCCcccc--cccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecC
Q 038405 658 ITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSI--DLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVC 735 (863)
Q Consensus 658 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~ 735 (863)
.. ..++|+.|++++|...... .+..+++|++|++++|.+..+++. .+..+++|+.|++++|
T Consensus 189 ~~---------------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 189 KD---------------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG--SLSFLPTLRELHLDNN 251 (332)
T ss_dssp SS---------------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT--GGGGCTTCCEEECCSS
T ss_pred cc---------------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh--HhhCCCCCCEEECCCC
Confidence 21 1257888999998776655 388889999999999998877553 4567899999999999
Q ss_pred CCCCCCcccccCCCcceEeeccCcchhhhhccc-CCccccccCccCcccceecccccccc--cccccCccCCCCccEEee
Q 038405 736 PVIRDLTWIREAPNLQFLSLVNCQALSEIIESA-GSSEVAESHNYFAYLMVIDLDSLPSL--KRICHGTMPFPSLQNVSV 812 (863)
Q Consensus 736 ~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~L--~~l~~~~~~~~~L~~L~i 812 (863)
.....+..+..+++|+.|++++|.. ..++... .. ......+++|+.|.+.+.+-. ...+.....+++|+.+.+
T Consensus 252 ~l~~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~---~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 252 KLSRVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCP---VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CCCBCCTTGGGCTTCCEEECCSSCC-CBCCTTSSSC---SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred cCeecChhhhcCccCCEEECCCCCC-CccChhHccc---cccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 6654445688999999999999874 4433211 00 001123677888888887632 111222334556666666
Q ss_pred ccCC
Q 038405 813 TNCP 816 (863)
Q Consensus 813 ~~C~ 816 (863)
+++.
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 6553
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=8.6e-23 Score=238.35 Aligned_cols=293 Identities=17% Similarity=0.185 Sum_probs=179.6
Q ss_pred cccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhccccccee
Q 038405 499 WREDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCL 574 (863)
Q Consensus 499 ~~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L 574 (863)
...++.+.+.++.+..+|... +++|++|++++|.+..+++..|..+++|++|+|++| .+..+|. .++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEE
Confidence 456788888888888888754 889999999999888888877889999999999999 5665554 56899999999
Q ss_pred eccCCCccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccc
Q 038405 575 NLSNTSIEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQI 653 (863)
Q Consensus 575 ~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L 653 (863)
+|++|.+..+|.. ++++++|++|++++|. +..+|+..++++++|++|++++|.+..+.. .....+..|....|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCCG---GGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcCh---hhhhhhhhhhcccCcc
Confidence 9999999999877 4889999999999987 555665558899999999999887655421 1233444444444444
Q ss_pred eeeEEeecCchhhhhhhccc--------cccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCC
Q 038405 654 YEISITLGSASALFKINFSW--------KLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFH 725 (863)
Q Consensus 654 ~~l~~~~~~~~~l~~l~~~~--------~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~ 725 (863)
..++.. ..+..+..+. ...++|+.|++++|.......+..+++|+.|++++|.+.++.+. .+..++
T Consensus 205 ~~l~~~----~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~ 278 (597)
T 3oja_B 205 STLAIP----IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH--PFVKMQ 278 (597)
T ss_dssp SEEECC----TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG--GGTTCS
T ss_pred ccccCC----chhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHH--HhcCcc
Confidence 332210 0111111100 11234555555555554443455555666666666555544332 234455
Q ss_pred CCCEEEEecCCCCCCCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCccCCC
Q 038405 726 NLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFP 805 (863)
Q Consensus 726 ~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~ 805 (863)
+|+.|+|++|.....+..+..+|+|+.|+|++|.. ..+|. ....+++|+.|+|+++. +..++ ...++
T Consensus 279 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~---------~~~~l~~L~~L~L~~N~-l~~~~--~~~~~ 345 (597)
T 3oja_B 279 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVER---------NQPQFDRLENLYLDHNS-IVTLK--LSTHH 345 (597)
T ss_dssp SCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCC-CCCGG---------GHHHHTTCSEEECCSSC-CCCCC--CCTTC
T ss_pred CCCEEECCCCCCCCCCcccccCCCCcEEECCCCCC-CccCc---------ccccCCCCCEEECCCCC-CCCcC--hhhcC
Confidence 56666665554332223334455666666655542 22321 22345555555555542 33332 23345
Q ss_pred CccEEeeccC
Q 038405 806 SLQNVSVTNC 815 (863)
Q Consensus 806 ~L~~L~i~~C 815 (863)
+|+.|+++++
T Consensus 346 ~L~~L~l~~N 355 (597)
T 3oja_B 346 TLKNLTLSHN 355 (597)
T ss_dssp CCSEEECCSS
T ss_pred CCCEEEeeCC
Confidence 5555555544
No 14
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=9.5e-23 Score=228.83 Aligned_cols=290 Identities=18% Similarity=0.152 Sum_probs=139.2
Q ss_pred ccceEEEeccCCccccCCCC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccC
Q 038405 500 REDFRLSLWGSSIEYLPETP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSN 578 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 578 (863)
+.++.+++.++.+..+|... +++|++|++++|.+..+| ++.+++|++|++++| .+..+| ++++++|++|++++
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCS
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCC
Confidence 34555555555555554322 555555555555555543 445555555555555 444443 55555555555555
Q ss_pred CCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEE
Q 038405 579 TSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISI 658 (863)
Q Consensus 579 ~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~ 658 (863)
|.++.+| ++++++|++|++++|. +..+| ++++++|++|++++|...... .......++.|....|.++.++
T Consensus 116 N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~- 186 (457)
T 3bz5_A 116 NKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD- 186 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC-
T ss_pred CcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec-
Confidence 5555554 5555555555555554 33332 445555555555554211110 1112233333333333333221
Q ss_pred eecCchhhhhhhc--------cccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEE
Q 038405 659 TLGSASALFKINF--------SWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHL 730 (863)
Q Consensus 659 ~~~~~~~l~~l~~--------~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L 730 (863)
+..++.++.+.. ....+++|+.|++++|..... ++..+++|+.|++++|.++++++. .+++|+.|
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i-p~~~l~~L~~L~l~~N~l~~~~~~-----~l~~L~~L 259 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPLTELDVS-----TLSKLTTL 259 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCCCT-----TCTTCCEE
T ss_pred -cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCccccc-CccccCCCCEEEeeCCcCCCcCHH-----HCCCCCEE
Confidence 111111111100 122345666677766665553 366666777777777766655332 23444333
Q ss_pred ----------EEecCCCCCCCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccC
Q 038405 731 ----------SIRVCPVIRDLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHG 800 (863)
Q Consensus 731 ----------~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~ 800 (863)
++++|.....+| .+.+++|+.|++++|..++.+|. .+++|+.|+++++++|+.+...
T Consensus 260 ~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~------------~~~~L~~L~l~~~~~L~~L~L~ 326 (457)
T 3bz5_A 260 HCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC------------QAAGITELDLSQNPKLVYLYLN 326 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC------------TTCCCSCCCCTTCTTCCEEECT
T ss_pred eccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceecc------------CCCcceEechhhcccCCEEECC
Confidence 333333222222 34567777777777766555442 2345555556666666655555
Q ss_pred ccCCCCccEEeeccCCCCCCCCCCCCC
Q 038405 801 TMPFPSLQNVSVTNCPNLRELPFNFDS 827 (863)
Q Consensus 801 ~~~~~~L~~L~i~~C~~L~~lp~~~~~ 827 (863)
.+.+..+ .+.+|++|+.|.++.|.
T Consensus 327 ~N~l~~l---~l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 327 NTELTEL---DVSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCCCSCC---CCTTCTTCSEEECCSSC
T ss_pred CCccccc---ccccCCcCcEEECCCCC
Confidence 4444333 35555555555554443
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=2.1e-22 Score=236.48 Aligned_cols=335 Identities=14% Similarity=0.122 Sum_probs=237.8
Q ss_pred ccccccceEEEeccCCccc------------------cCCCC----CCCccEEEeecccccccchhhhhcCCCccEEecc
Q 038405 496 ADSWREDFRLSLWGSSIEY------------------LPETP----CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLS 553 (863)
Q Consensus 496 ~~~~~~~~~l~l~~~~~~~------------------l~~~~----~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls 553 (863)
.....+++.+++.+|.+.. +|... +++|++|++++|.+....+..+.++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 4455678889999888887 77653 6889999999986544333447889999999999
Q ss_pred CCcCcc--ccchhhhcc------cccceeeccCCCccccch--hhhcccCccEEecCCCCCccccchhhhcCCCCCceee
Q 038405 554 YNLDLT--QLPAEMGAL------INLRCLNLSNTSIEELPS--EIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFS 623 (863)
Q Consensus 554 ~~~~i~--~lp~~i~~L------~~L~~L~L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~ 623 (863)
+|..+. .+|..++.+ ++|++|++++|.+..+|. .++++++|++|++++|.....+| . ++++++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEE
Confidence 984255 588888887 899999999998889998 89999999999999988444888 4 88889999999
Q ss_pred ccCcchhhhccCCCCcccc-chhhhhhcccceeeEEeecCch--hhhhhhcc-----------cc-------ccccccEE
Q 038405 624 LFSTELIELHRMPPNQTTI-LDELECLGNQIYEISITLGSAS--ALFKINFS-----------WK-------LCSCIKRL 682 (863)
Q Consensus 624 l~~~~~~~~~~~~~~~~~~-l~~L~~l~n~L~~l~~~~~~~~--~l~~l~~~-----------~~-------~~~~L~~L 682 (863)
+++|.+..++ ........ |+.|....|.+..++..+.... .++.+..+ .. .+.+|+.|
T Consensus 360 L~~N~l~~lp-~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 360 LAYNQITEIP-ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CCSSEEEECC-TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCCCcccccc-HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 9888776432 22334455 7777766666665543332221 22222221 11 34578899
Q ss_pred EecccCCccccc--ccccCCcceeEeccCcccccCCCCCC-----CCCCCCCCEEEEecCCCCCCCcccc--cCCCcceE
Q 038405 683 TIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNG-----WTNFHNLHHLSIRVCPVIRDLTWIR--EAPNLQFL 753 (863)
Q Consensus 683 ~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~-----~~~l~~L~~L~L~~~~~~~~l~~l~--~l~~L~~L 753 (863)
++++|.....+. +..+++|++|++++|.+..++..... ...+++|+.|++++|.....+..+. .+++|+.|
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEE
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEE
Confidence 999888775443 55688999999999998866543100 1123389999999997654344565 89999999
Q ss_pred eeccCcchhhhhcccCCccccccCccCcccceeccccc------ccccccccCccCCCCccEEeeccCCCCCCCCCCCCC
Q 038405 754 SLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSL------PSLKRICHGTMPFPSLQNVSVTNCPNLRELPFNFDS 827 (863)
Q Consensus 754 ~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~------~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~ 827 (863)
+|++|.... +|. ....+++|+.|+|+++ .-...++.....+++|+.|++++|. ++.+|....
T Consensus 519 ~Ls~N~l~~-ip~---------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~- 586 (636)
T 4eco_A 519 DLSYNSFSK-FPT---------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT- 586 (636)
T ss_dssp ECCSSCCSS-CCC---------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-
T ss_pred ECCCCCCCC-cCh---------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh-
Confidence 999987543 543 4456899999999643 3344566666678999999999975 588887543
Q ss_pred CCCcceEEEchHhhhhcCcc
Q 038405 828 AKNSLVSIRGSAEWWEQLQW 847 (863)
Q Consensus 828 ~~~~l~~i~~~~~~~~~l~w 847 (863)
.+|+.+.-+.+-+..+..
T Consensus 587 --~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 587 --PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp --TTCCEEECCSCTTCEEEC
T ss_pred --CcCCEEECcCCCCccccH
Confidence 677777776665555443
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=5.3e-22 Score=230.41 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=73.5
Q ss_pred cccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCC---cccccCCCcceEeeccCcchhhhhccc-C--
Q 038405 696 RNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDL---TWIREAPNLQFLSLVNCQALSEIIESA-G-- 769 (863)
Q Consensus 696 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l---~~l~~l~~L~~L~L~~~~~l~~i~~~~-~-- 769 (863)
..+++|++|++++|.+.+..+. .+..+++|+.|++++|...... ..+..+++|+.|++++|.....++... .
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQ--GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT--TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred cCCCCceEEECCCCccccchhh--hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 3445555555555555443221 2334555555555555332211 124455555555555554332232210 0
Q ss_pred --Ccccc--------ccCccC-cccceecccccccccccccCccCCCCccEEeeccCCCCCCCCCCCCCCCCcceEEE
Q 038405 770 --SSEVA--------ESHNYF-AYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNCPNLRELPFNFDSAKNSLVSIR 836 (863)
Q Consensus 770 --~~~~~--------~~~~~~-~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~ 836 (863)
.+.+. .....+ ++|+.|+++++ +++.++.....+++|+.|+++++ +|+.+|........+++.+.
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEE
T ss_pred ccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEE
Confidence 00000 011223 68899999886 77788776668899999999986 68888876223335555553
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=8e-22 Score=222.92 Aligned_cols=322 Identities=17% Similarity=0.187 Sum_probs=198.9
Q ss_pred ccceEEEeccCCccccCCC-C--CCCccEEEeeccccc-ccchhhhhcCCCccEEeccCCcCccc-cchhhhccccccee
Q 038405 500 REDFRLSLWGSSIEYLPET-P--CPHLQTLLVRFTVLE-IFPHRFFESMGALKVLDLSYNLDLTQ-LPAEMGALINLRCL 574 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~-~--~~~Lr~L~l~~~~l~-~l~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~~L~~L~~L 574 (863)
+.++++++.+|.+..++.. . +++|++|++++|.+. .+++..|..+++|++|+|++| .+.. .|..++++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence 6799999999999887443 3 899999999999775 677777999999999999999 5554 48889999999999
Q ss_pred eccCCCccc-cchh--hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCcc--ccchhhhhh
Q 038405 575 NLSNTSIEE-LPSE--IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQT--TILDELECL 649 (863)
Q Consensus 575 ~L~~~~i~~-lP~~--i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~L~~l 649 (863)
++++|.+.. +|.. ++++++|++|++++|......|...++++++|++|++++|.+....+...... ..+..|...
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 999999985 4554 89999999999999984444466658899999999999988765543322111 122222222
Q ss_pred cc----------------------cceeeEEeecCchhh--hhhhccccccccccEEEecccCCcccc------------
Q 038405 650 GN----------------------QIYEISITLGSASAL--FKINFSWKLCSCIKRLTIMHNLDSHSI------------ 693 (863)
Q Consensus 650 ~n----------------------~L~~l~~~~~~~~~l--~~l~~~~~~~~~L~~L~l~~~~~~~~~------------ 693 (863)
.| .|+.+.++....... ..+. ..-..++|+.|++++|......
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF-DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH-HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh-ccccccceeeEeeccccccccccchhhhccCccc
Confidence 22 222332222111110 0000 0001246667776665432211
Q ss_pred ccc--ccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCC-cccccCCCcceEeeccCcchhhhhcccCC
Q 038405 694 DLR--NMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDL-TWIREAPNLQFLSLVNCQALSEIIESAGS 770 (863)
Q Consensus 694 ~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~ 770 (863)
.+. ..++|+.|++++|.+.+..+. .+..+++|+.|++++|...... ..+..+++|++|+|++|.. ..++.
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~---- 340 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKS--VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDS---- 340 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECG----
T ss_pred ccccccccCceEEEecCccccccchh--hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CCcCh----
Confidence 011 124677777777766655333 3445667777777766544332 2456667777777776653 22211
Q ss_pred ccccccCccCcccceeccccccccccc-ccCccCCCCccEEeeccCCCCCCCCCCCCCCCCcceEEE
Q 038405 771 SEVAESHNYFAYLMVIDLDSLPSLKRI-CHGTMPFPSLQNVSVTNCPNLRELPFNFDSAKNSLVSIR 836 (863)
Q Consensus 771 ~~~~~~~~~~~~L~~L~L~~~~~L~~l-~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~ 836 (863)
.....+++|+.|+|+++ .++.+ +.....+++|+.|++++| +++.+|........+|+.+.
T Consensus 341 ----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 341 ----RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp ----GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred ----hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEE
Confidence 23345666777777665 33333 334445666777776664 46666554333334555543
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=3.1e-22 Score=235.05 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=52.6
Q ss_pred cceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeecc
Q 038405 501 EDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLS 577 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 577 (863)
.++.+++.+|.+..++... +++|++|++++|.+..+++..|.++++|++|+|++|......|..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 4555555555555543221 5555555555555555544445555555555555552222234455555555555555
Q ss_pred CCCcccc-chhhhcccCccEEecCCCC
Q 038405 578 NTSIEEL-PSEIMYLKNLKILLLDGMR 603 (863)
Q Consensus 578 ~~~i~~l-P~~i~~L~~L~~L~l~~~~ 603 (863)
+|.+..+ |..++++++|++|++++|.
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~ 140 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNH 140 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred ccCcccCCcchhccCCcccEEECCCCc
Confidence 5555554 3335555555555555544
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=4.4e-22 Score=232.01 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=84.5
Q ss_pred ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCC-cccccCCCcceEeeccCcchh-hhhcccCCcc
Q 038405 695 LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDL-TWIREAPNLQFLSLVNCQALS-EIIESAGSSE 772 (863)
Q Consensus 695 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~-~i~~~~~~~~ 772 (863)
+..+++|++|++++|.+....+.. .+..+++|+.|++++|.....+ ..+..+++|+.|++++|.... .+|
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------- 463 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------- 463 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSC-TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-------
T ss_pred ccccCCCCEEEccCCccccccchh-hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-------
Confidence 334455555555555544432211 3456677777777777554433 346677788888887776432 232
Q ss_pred ccccCccCcccceeccccccccccc-ccCccCCCCccEEeeccCCCCCCCCCCCCCCCCcceEEEchHh
Q 038405 773 VAESHNYFAYLMVIDLDSLPSLKRI-CHGTMPFPSLQNVSVTNCPNLRELPFNFDSAKNSLVSIRGSAE 840 (863)
Q Consensus 773 ~~~~~~~~~~L~~L~L~~~~~L~~l-~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~ 840 (863)
.....+++|+.|+++++. ++.+ +.....+++|+.|++++| +++.+|........+++.+.-..+
T Consensus 464 --~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 464 --DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp --SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --hhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence 345678899999999874 4444 445567899999999987 677777654444566776654433
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=5.2e-22 Score=233.10 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=88.2
Q ss_pred ccccccceEEEeccCCccccCCC-C--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhccccc
Q 038405 496 ADSWREDFRLSLWGSSIEYLPET-P--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINL 571 (863)
Q Consensus 496 ~~~~~~~~~l~l~~~~~~~l~~~-~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L 571 (863)
......++.+.+.+|.+..++.. . +++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..++++++|
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTL 131 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcchhccCCcc
Confidence 34455677777777776665332 2 677777777777776666656777777777777777 55554 4556777777
Q ss_pred ceeeccCCCccccc-hhhhcccCccEEecCCCCCccccchhhhcCCCCCc--eeeccCcchhhhcc
Q 038405 572 RCLNLSNTSIEELP-SEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLK--VFSLFSTELIELHR 634 (863)
Q Consensus 572 ~~L~L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~--~L~l~~~~~~~~~~ 634 (863)
++|++++|.+..++ +.+..+++|++|++++|. +..++...++.+++|+ +|++.+|.+....+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccCh
Confidence 77777777777652 233347777777777776 4455444467777777 66777666554443
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=3.7e-22 Score=225.63 Aligned_cols=322 Identities=13% Similarity=0.074 Sum_probs=213.0
Q ss_pred EEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCCcc
Q 038405 504 RLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTSIE 582 (863)
Q Consensus 504 ~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~ 582 (863)
.+...++.++.+|. ..++|++|++++|.+..+++..|..+++|++|++++|.....+ |..++++++|++|++++|.+.
T Consensus 14 ~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 14 NAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp EEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred ccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 45666777888887 5689999999999999987777999999999999999443355 567999999999999999999
Q ss_pred cc-chhhhcccCccEEecCCCCCccccc-hhhhcCCCCCceeeccCcchhhhccCC-CCccccchhhhhhcccceeeEEe
Q 038405 583 EL-PSEIMYLKNLKILLLDGMRHFHLIP-ARVFSSLLSLKVFSLFSTELIELHRMP-PNQTTILDELECLGNQIYEISIT 659 (863)
Q Consensus 583 ~l-P~~i~~L~~L~~L~l~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~L~~l~n~L~~l~~~ 659 (863)
.+ |..++++++|++|++++|.....+| ...++++++|++|++++|.+....+.. ......|+.|....|.+......
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 87 7789999999999999998433333 344889999999999999876654432 33445566665555544432110
Q ss_pred -ecCc--hhhhhhhc-------------------cccccccccEEEecccCCccccc--c---cccCCcceeEeccCccc
Q 038405 660 -LGSA--SALFKINF-------------------SWKLCSCIKRLTIMHNLDSHSID--L---RNMMHLETLNIVECSLE 712 (863)
Q Consensus 660 -~~~~--~~l~~l~~-------------------~~~~~~~L~~L~l~~~~~~~~~~--l---~~~~~L~~L~l~~~~l~ 712 (863)
+... ..+..+.. ....+++|+.|++++|......+ + ...++|+.|++++|...
T Consensus 173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccc
Confidence 0000 00000000 01122457777777665543322 1 12366777777766422
Q ss_pred ccCCCC--------CCCC--CCCCCCEEEEecCCCCCCC-cccccCCCcceEeeccCcchhhhhcccCCccccccCccCc
Q 038405 713 RVDPTF--------NGWT--NFHNLHHLSIRVCPVIRDL-TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFA 781 (863)
Q Consensus 713 ~~~~~~--------~~~~--~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~ 781 (863)
...... ..+. ..++|+.|++++|.....+ ..++.+++|+.|+|++|......+ .....++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~ 323 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD---------NAFWGLT 323 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT---------TTTTTCT
T ss_pred ccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh---------hHhcCcc
Confidence 211100 0111 2368999999999766554 458899999999999998543222 2456789
Q ss_pred ccceecccccccccccc-cCccCCCCccEEeeccCCCCCCCCCCCCCCCCcceEEEc
Q 038405 782 YLMVIDLDSLPSLKRIC-HGTMPFPSLQNVSVTNCPNLRELPFNFDSAKNSLVSIRG 837 (863)
Q Consensus 782 ~L~~L~L~~~~~L~~l~-~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~ 837 (863)
+|+.|+++++ .+..+. .....+++|+.|++++| +++.++........+|+.+.-
T Consensus 324 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 324 HLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEEC
Confidence 9999999987 455553 34456889999998876 345443222223345555443
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1.4e-21 Score=210.67 Aligned_cols=268 Identities=19% Similarity=0.182 Sum_probs=197.6
Q ss_pred cceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCC
Q 038405 501 EDFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNT 579 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~ 579 (863)
.++.+.+.++.+..+|....+++++|++++|.+..++...|..+++|++|++++| .+..+ |..++++++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCC
Confidence 5678888888899998877889999999999999999878999999999999999 66655 888999999999999999
Q ss_pred CccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhh--hccCCCCccccchhhhhhcccceeeE
Q 038405 580 SIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIE--LHRMPPNQTTILDELECLGNQIYEIS 657 (863)
Q Consensus 580 ~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~L~~l~n~L~~l~ 657 (863)
.++.+|..+. ++|++|++++|. +..++...+.++++|++|++++|.+.. ..+........++.|....|.+..++
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred cCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 9999998765 799999999997 677777779999999999999987643 22222222333333333333333221
Q ss_pred EeecCchhhhhhhccccccccccEEEecccCCcccc--cccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecC
Q 038405 658 ITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSI--DLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVC 735 (863)
Q Consensus 658 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~ 735 (863)
. ...++|+.|++++|...... .+..+++|++|++++|.+..+++. .+..+++|+.|++++|
T Consensus 188 ~---------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 188 Q---------------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG--SLANTPHLRELHLNNN 250 (330)
T ss_dssp S---------------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT--TGGGSTTCCEEECCSS
T ss_pred c---------------cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh--hccCCCCCCEEECCCC
Confidence 1 11257888999888766553 378888999999999988777553 4557888999999998
Q ss_pred CCCCCCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccc
Q 038405 736 PVIRDLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLP 792 (863)
Q Consensus 736 ~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 792 (863)
.....+..+..+++|++|++++|.. ..++...-. .......++.|+.+.+.+.+
T Consensus 251 ~l~~lp~~l~~l~~L~~L~l~~N~i-~~~~~~~f~--~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 251 KLVKVPGGLADHKYIQVVYLHNNNI-SAIGSNDFC--PPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCSSCCTTTTTCSSCCEEECCSSCC-CCCCTTSSS--CSSCCTTSCCCSEEECCSSS
T ss_pred cCccCChhhccCCCcCEEECCCCcC-CccChhhcC--CcccccccccccceEeecCc
Confidence 6654445688889999999988873 343321100 00111235677777777754
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=9.2e-22 Score=222.66 Aligned_cols=287 Identities=15% Similarity=0.203 Sum_probs=137.4
Q ss_pred ccccccceEEEeccCCccccCCCC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhccccccee
Q 038405 496 ADSWREDFRLSLWGSSIEYLPETP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCL 574 (863)
Q Consensus 496 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 574 (863)
......++.+++.+|.+..++... +++|++|++++|.+..+++ +..+++|++|++++| .+..+|. ++++++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEE
Confidence 344455566666666555555433 5666666666665555554 556666666666666 4555544 5566666666
Q ss_pred eccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhccc--
Q 038405 575 NLSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQ-- 652 (863)
Q Consensus 575 ~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~-- 652 (863)
++++|.+..+|. ++++++|++|+++++ +..++. ++++++|++|++++|.+..+.. ......++.|....|.
T Consensus 140 ~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 140 ELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 212 (466)
T ss_dssp EEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCC
T ss_pred ECCCCccCCChh-hccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecCCccc
Confidence 666665555542 444444444444321 122221 4455555555555544322210 0011122222221111
Q ss_pred ----------ceeeEEeecCchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCC
Q 038405 653 ----------IYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWT 722 (863)
Q Consensus 653 ----------L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 722 (863)
|+.+.+.......+. ....+++|+.|++++|......++..+++|++|++++|.+..+++ +.
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~ 284 (466)
T 1o6v_A 213 DITPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP----LA 284 (466)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG----GT
T ss_pred ccccccccCCCCEEECCCCCcccch----hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc----cc
Confidence 112222111111111 112344566666666555444445555666666666665554432 23
Q ss_pred CCCCCCEEEEecCCCCCCCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCcc
Q 038405 723 NFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTM 802 (863)
Q Consensus 723 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~ 802 (863)
.+++|+.|++++|.. ..++.+..+++|+.|+|++|..... + ....+++|+.|+++++ .++.++ ...
T Consensus 285 ~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~L~~n~l~~~-~----------~~~~l~~L~~L~l~~n-~l~~~~-~l~ 350 (466)
T 1o6v_A 285 GLTALTNLELNENQL-EDISPISNLKNLTYLTLYFNNISDI-S----------PVSSLTKLQRLFFYNN-KVSDVS-SLA 350 (466)
T ss_dssp TCTTCSEEECCSSCC-SCCGGGGGCTTCSEEECCSSCCSCC-G----------GGGGCTTCCEEECCSS-CCCCCG-GGT
T ss_pred CCCccCeEEcCCCcc-cCchhhcCCCCCCEEECcCCcCCCc-h----------hhccCccCCEeECCCC-ccCCch-hhc
Confidence 456666666666643 3344456666666666666653221 1 1234566666666554 333332 223
Q ss_pred CCCCccEEeeccC
Q 038405 803 PFPSLQNVSVTNC 815 (863)
Q Consensus 803 ~~~~L~~L~i~~C 815 (863)
.+++|+.|++++|
T Consensus 351 ~l~~L~~L~l~~n 363 (466)
T 1o6v_A 351 NLTNINWLSAGHN 363 (466)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCCCCCEEeCCCC
Confidence 4555666665555
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=5.8e-22 Score=231.32 Aligned_cols=294 Identities=16% Similarity=0.216 Sum_probs=219.7
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhcccccceeeccCCCccccchh-hhcccCccEE
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLNLSNTSIEELPSE-IMYLKNLKIL 597 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L 597 (863)
+++++.|.+.+|.+..+|+.+|..+++|++|+|++| .+..+| ..++++++|++|+|++|.+..+|+. ++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 789999999999999999999999999999999999 666665 4899999999999999999998765 6999999999
Q ss_pred ecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccc----
Q 038405 598 LLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSW---- 673 (863)
Q Consensus 598 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~---- 673 (863)
++++|. +..+|..+++++++|++|++++|.+..+.+..+....+|+.|....|.+..++ ...++.+..+..+.
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc
Confidence 999997 77889887899999999999999988776666666777888877777766543 22222222222221
Q ss_pred --cccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCC-cccccCCCc
Q 038405 674 --KLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDL-TWIREAPNL 750 (863)
Q Consensus 674 --~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L 750 (863)
....+|+.|++++|....... ...++|+.|++++|.+.+.+ .+..+++|+.|+|++|.....+ ..++.+++|
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~----~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTA----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEEC-SCCSCCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cccCCchhheeeccCCccccccc-ccCCCCCEEECCCCCCCCCh----hhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 123456777777766544332 22357888888888776642 3456888888888888654443 457888888
Q ss_pred ceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEeeccCCCCCCCCCCCCCCCC
Q 038405 751 QFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNCPNLRELPFNFDSAKN 830 (863)
Q Consensus 751 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~ 830 (863)
+.|+|++|.. ..++ .....+++|+.|+|+++ .+..++.....+++|+.|++++|+ +..+|++. ..
T Consensus 281 ~~L~Ls~N~l-~~l~---------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~ 345 (597)
T 3oja_B 281 ERLYISNNRL-VALN---------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLST---HH 345 (597)
T ss_dssp CEEECTTSCC-CEEE---------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT---TC
T ss_pred CEEECCCCCC-CCCC---------cccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcChhh---cC
Confidence 8888888863 3333 23456899999999986 566777666678999999999874 67777543 24
Q ss_pred cceEEEc
Q 038405 831 SLVSIRG 837 (863)
Q Consensus 831 ~l~~i~~ 837 (863)
+|..+..
T Consensus 346 ~L~~L~l 352 (597)
T 3oja_B 346 TLKNLTL 352 (597)
T ss_dssp CCSEEEC
T ss_pred CCCEEEe
Confidence 5555543
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=235.64 Aligned_cols=130 Identities=24% Similarity=0.233 Sum_probs=101.4
Q ss_pred ccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhcccccceee
Q 038405 500 REDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLN 575 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~ 575 (863)
..++.+++.+|.+..++... +++|++|++++|.+..+++..|.++++|++|+|++| .+..+| ..|+++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccc
Confidence 46788888888888776532 888888888888888888777888888888888888 565554 6788888888888
Q ss_pred ccCCCccccch-hhhcccCccEEecCCCCCcc-ccchhhhcCCCCCceeeccCcchhh
Q 038405 576 LSNTSIEELPS-EIMYLKNLKILLLDGMRHFH-LIPARVFSSLLSLKVFSLFSTELIE 631 (863)
Q Consensus 576 L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~ 631 (863)
+++|.+..+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+..
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce
Confidence 88888888876 58888888888888887332 35666 7888888888888776543
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=4.6e-22 Score=230.69 Aligned_cols=132 Identities=28% Similarity=0.378 Sum_probs=103.5
Q ss_pred ccceEEEeccCCccccCCC-C--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceee
Q 038405 500 REDFRLSLWGSSIEYLPET-P--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLN 575 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~-~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~ 575 (863)
..++++++.+|.+..++.. . +++|++|++++|.+..+++..|..+++|++|++++| .+..+|.. ++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 5788888888888876543 2 888888888888888888777888888888888888 66666554 88888888888
Q ss_pred ccCCCccc--cchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhh
Q 038405 576 LSNTSIEE--LPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIEL 632 (863)
Q Consensus 576 L~~~~i~~--lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 632 (863)
+++|.+.. .|..++++++|++|++++|..+..+|...++++++|++|++++|.+...
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 88888874 4667888888888888888766777755578888888888887766543
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=9.1e-22 Score=223.77 Aligned_cols=290 Identities=23% Similarity=0.230 Sum_probs=193.9
Q ss_pred ccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceee
Q 038405 500 REDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLN 575 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~ 575 (863)
..++.+++.+|.+..++... +++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. ++++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 47889999999998886543 899999999999999887777999999999999999 78888764 68999999999
Q ss_pred ccCCCcccc-chhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccce
Q 038405 576 LSNTSIEEL-PSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIY 654 (863)
Q Consensus 576 L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~ 654 (863)
|++|.+..+ |..+.++++|++|++++|. +..++...+.++++|++|++++|.+..+..........|+.|....|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 999999877 5568999999999999997 55565555899999999999998765443221222333333333333332
Q ss_pred eeEEeecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEE
Q 038405 655 EISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSI 732 (863)
Q Consensus 655 ~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L 732 (863)
.++ ......+++|+.|++++|......+ .....+|++|++++|.++.++.. .+..+++|+.|+|
T Consensus 190 ~~~------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L 255 (477)
T 2id5_A 190 AIR------------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL--AVRHLVYLRFLNL 255 (477)
T ss_dssp EEC------------TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH--HHTTCTTCCEEEC
T ss_pred EeC------------hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH--HhcCccccCeeEC
Confidence 221 1122345667777777765544332 22334677777777776655422 2345677777777
Q ss_pred ecCCCCCCC-cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccC-ccCCCCccEE
Q 038405 733 RVCPVIRDL-TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHG-TMPFPSLQNV 810 (863)
Q Consensus 733 ~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~L~~L 810 (863)
++|...... ..+..+++|+.|+|++|......+ .....+++|+.|+|+++ +++.++.. ...+++|+.|
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP---------YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp CSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT---------TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEE
T ss_pred CCCcCCccChhhccccccCCEEECCCCccceECH---------HHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEE
Confidence 777543322 235667777777777765332211 23445667777777664 44444432 2345566666
Q ss_pred eeccC
Q 038405 811 SVTNC 815 (863)
Q Consensus 811 ~i~~C 815 (863)
++.++
T Consensus 326 ~l~~N 330 (477)
T 2id5_A 326 ILDSN 330 (477)
T ss_dssp ECCSS
T ss_pred EccCC
Confidence 66553
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.7e-22 Score=240.96 Aligned_cols=289 Identities=13% Similarity=0.158 Sum_probs=184.8
Q ss_pred CCccccCCCC--CCCccEEEeecccccc------------------cchhh-hhcCCCccEEeccCCcCccccchhhhcc
Q 038405 510 SSIEYLPETP--CPHLQTLLVRFTVLEI------------------FPHRF-FESMGALKVLDLSYNLDLTQLPAEMGAL 568 (863)
Q Consensus 510 ~~~~~l~~~~--~~~Lr~L~l~~~~l~~------------------l~~~~-~~~l~~L~~L~Ls~~~~i~~lp~~i~~L 568 (863)
|.+..+|... +++|++|++++|.+.. +|..+ |..+++|++|+|++|.....+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5566677765 9999999999999888 88773 3499999999999997788999999999
Q ss_pred cccceeeccCCC-ccc--cchhhhccc-------CccEEecCCCCCccccch-hhhcCCCCCceeeccCcchhhhccCCC
Q 038405 569 INLRCLNLSNTS-IEE--LPSEIMYLK-------NLKILLLDGMRHFHLIPA-RVFSSLLSLKVFSLFSTELIELHRMPP 637 (863)
Q Consensus 569 ~~L~~L~L~~~~-i~~--lP~~i~~L~-------~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~ 637 (863)
++|++|+|++|. ++. +|..+++++ +|++|++++|. +..+|. +.++++++|++|++++|.+..++ ..
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE--AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch--hh
Confidence 999999999997 884 999888877 99999999998 558998 23999999999999999877443 44
Q ss_pred CccccchhhhhhcccceeeEEeecCchh-hhhhhcccc----------cc--ccccEEEecccCCccccc-c----c--c
Q 038405 638 NQTTILDELECLGNQIYEISITLGSASA-LFKINFSWK----------LC--SCIKRLTIMHNLDSHSID-L----R--N 697 (863)
Q Consensus 638 ~~~~~l~~L~~l~n~L~~l~~~~~~~~~-l~~l~~~~~----------~~--~~L~~L~l~~~~~~~~~~-l----~--~ 697 (863)
.....|+.|....|.+..++..+..+.. ++.+..+.+ .. ++|+.|++++|......+ + . .
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 4566677777666666544433332222 222222111 11 125555555554432211 1 1 2
Q ss_pred cCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCccc--------ccCCCcceEeeccCcchhhhhcccC
Q 038405 698 MMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWI--------REAPNLQFLSLVNCQALSEIIESAG 769 (863)
Q Consensus 698 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l--------~~l~~L~~L~L~~~~~l~~i~~~~~ 769 (863)
+++|+.|++++|.+..++.. .+..+++|+.|+|++|.....++.+ .++++|+.|+|++|.. ..+|.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~--~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~lp~--- 745 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTE--LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSD--- 745 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHH--HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC-CCCCG---
T ss_pred CCCcCEEEccCCcCCccCHH--HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCC-ccchH---
Confidence 23555555555555443221 1123455666666665433222111 1223566666666642 23332
Q ss_pred CccccccC--ccCcccceecccccccccccccCccCCCCccEEeecc
Q 038405 770 SSEVAESH--NYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTN 814 (863)
Q Consensus 770 ~~~~~~~~--~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~ 814 (863)
.. ..+++|+.|+|+++ +++.++.....+++|+.|++++
T Consensus 746 ------~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 746 ------DFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp ------GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCC
T ss_pred ------HhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCC
Confidence 22 25677777777764 4455655555677777777754
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=236.41 Aligned_cols=259 Identities=17% Similarity=0.166 Sum_probs=170.9
Q ss_pred ccccceEEEeccCCccccCCCC---CCCccEEEeecc-cccccchhhhhcCCCccEEeccCCcCccc-cchhhhcccccc
Q 038405 498 SWREDFRLSLWGSSIEYLPETP---CPHLQTLLVRFT-VLEIFPHRFFESMGALKVLDLSYNLDLTQ-LPAEMGALINLR 572 (863)
Q Consensus 498 ~~~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~-~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~~L~~L~ 572 (863)
....+++|.+++|.+..++... +++|++|++++| .+..+++..|.++++|++|+|++| .+.. .|..|+++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccC
Confidence 4568999999999998875433 999999999999 566776777999999999999999 5554 488999999999
Q ss_pred eeeccCCCccc-cchh--hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCcc--ccchhhh
Q 038405 573 CLNLSNTSIEE-LPSE--IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQT--TILDELE 647 (863)
Q Consensus 573 ~L~L~~~~i~~-lP~~--i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~L~ 647 (863)
+|+|++|.+.. +|.. ++++++|++|++++|......|...+++|++|++|++++|.+....+...... ..++.|.
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 99999999886 5665 89999999999999984444343448999999999999987643322111111 1222222
Q ss_pred hhccc--------------------ceeeEEeecCch------------------------------------hhhhhhc
Q 038405 648 CLGNQ--------------------IYEISITLGSAS------------------------------------ALFKINF 671 (863)
Q Consensus 648 ~l~n~--------------------L~~l~~~~~~~~------------------------------------~l~~l~~ 671 (863)
...|. |+.+.++..... ....-..
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 22211 112211111000 0000000
Q ss_pred cccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCC-cccccCC
Q 038405 672 SWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDL-TWIREAP 748 (863)
Q Consensus 672 ~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~ 748 (863)
.....++|+.|++++|......+ +..+++|+.|++++|.+..+.+. .+..+++|+.|+|++|...... ..+..++
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE--AFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT--TTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH--HhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 00012467777777776554432 66777777777777777666443 3456777777777777543332 3466777
Q ss_pred CcceEeeccCc
Q 038405 749 NLQFLSLVNCQ 759 (863)
Q Consensus 749 ~L~~L~L~~~~ 759 (863)
+|+.|++++|.
T Consensus 339 ~L~~L~L~~N~ 349 (844)
T 3j0a_A 339 KVAYIDLQKNH 349 (844)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEECCCCC
Confidence 77777777764
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=7.2e-22 Score=231.91 Aligned_cols=121 Identities=24% Similarity=0.265 Sum_probs=85.0
Q ss_pred ccccccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhccccc
Q 038405 496 ADSWREDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINL 571 (863)
Q Consensus 496 ~~~~~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L 571 (863)
......++.+++.+|.+..++... +++|++|++++|.+..+++..|+++++|++|++++| .+..+| ..++++++|
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITL 130 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCC
Confidence 345567778888888777764432 778888888888777776666778888888888888 555554 567788888
Q ss_pred ceeeccCCCcc--ccchhhhcccCccEEecCCCCCccccchhhhcCCCC
Q 038405 572 RCLNLSNTSIE--ELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLS 618 (863)
Q Consensus 572 ~~L~L~~~~i~--~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~ 618 (863)
++|++++|.+. .+|..++++++|++|++++|. +..++...++.+++
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRE 178 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHH
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhc
Confidence 88888888776 467778888888888888776 44443332444443
No 31
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=3e-22 Score=240.73 Aligned_cols=266 Identities=21% Similarity=0.161 Sum_probs=174.8
Q ss_pred ccccceEEEeccCCcc-ccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccc
Q 038405 498 SWREDFRLSLWGSSIE-YLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLR 572 (863)
Q Consensus 498 ~~~~~~~l~l~~~~~~-~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~ 572 (863)
....++.+.+.+|.+. .+|... +++|++|++++|.+....+..|+.+++|++|++++|.....+|.. ++++++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 4456777777777766 455543 578888888888776554455778888888888888333377765 77888888
Q ss_pred eeeccCCCcc-ccchhhhccc-CccEEecCCCCCccccchhhhcC--CCCCceeeccCcchhhhccCCCCccccchhhhh
Q 038405 573 CLNLSNTSIE-ELPSEIMYLK-NLKILLLDGMRHFHLIPARVFSS--LLSLKVFSLFSTELIELHRMPPNQTTILDELEC 648 (863)
Q Consensus 573 ~L~L~~~~i~-~lP~~i~~L~-~L~~L~l~~~~~l~~lp~~~i~~--L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 648 (863)
+|++++|.+. .+|..+.+++ +|++|++++|.....+|.. +.. +++|++|++.+|.+.+..+........|+.|..
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 8888888776 7777777776 7888888888755556655 444 777888888887765444433334455555555
Q ss_pred hcccce-eeEEeecCchhhhhhh-----------ccccccccccEEEecccCCccccc--ccccCCcceeEeccCccccc
Q 038405 649 LGNQIY-EISITLGSASALFKIN-----------FSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERV 714 (863)
Q Consensus 649 l~n~L~-~l~~~~~~~~~l~~l~-----------~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~ 714 (863)
..|.+. .++..+..++.++.+. .....+++|+.|++++|......+ +..+++|++|++++|.+.+.
T Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence 554443 2222222222222221 223345677788887777664433 77778888888888877654
Q ss_pred CCCCCCCCCCCCCCEEEEecCCCCCCC-cccccCCCcceEeeccCcchhhhhc
Q 038405 715 DPTFNGWTNFHNLHHLSIRVCPVIRDL-TWIREAPNLQFLSLVNCQALSEIIE 766 (863)
Q Consensus 715 ~~~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~i~~ 766 (863)
.+. .+..+++|+.|++++|.....+ ..++.+++|+.|+|++|.....+|.
T Consensus 506 ~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 506 IPK--WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCG--GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred CCh--HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 332 3456788888888888665444 4577888888888888876655554
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=6.2e-22 Score=238.00 Aligned_cols=87 Identities=22% Similarity=0.211 Sum_probs=51.8
Q ss_pred CCCccEEeccCCcCccccchhhhcc-cccceeeccCCCcc-ccchhhhcccCccEEecCCCCCccccchhhhcCCCCCce
Q 038405 544 MGALKVLDLSYNLDLTQLPAEMGAL-INLRCLNLSNTSIE-ELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKV 621 (863)
Q Consensus 544 l~~L~~L~Ls~~~~i~~lp~~i~~L-~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 621 (863)
+++|++|++++|.....+|..+..+ ++|++|++++|.+. .+|..++++++|++|++++|.....+|...++++++|++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 3444444444442222455555443 66677777766665 556667777777777777766444666655667777777
Q ss_pred eeccCcchh
Q 038405 622 FSLFSTELI 630 (863)
Q Consensus 622 L~l~~~~~~ 630 (863)
|++++|.+.
T Consensus 348 L~Ls~n~l~ 356 (768)
T 3rgz_A 348 LDLSFNEFS 356 (768)
T ss_dssp EECCSSEEE
T ss_pred EeCcCCccC
Confidence 777766554
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=1.2e-21 Score=233.35 Aligned_cols=255 Identities=21% Similarity=0.237 Sum_probs=165.9
Q ss_pred ccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceee
Q 038405 500 REDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLN 575 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~ 575 (863)
..++++++.+|.+..++... +++|++|++++|.+..+++..|..+++|++|+|++| .+..+|. .|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 57899999999998887643 899999999999999888888999999999999999 7888886 589999999999
Q ss_pred ccCCCccccc-hhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCC--ccccchhhhhhccc
Q 038405 576 LSNTSIEELP-SEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPN--QTTILDELECLGNQ 652 (863)
Q Consensus 576 L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~--~~~~l~~L~~l~n~ 652 (863)
+++|.+..+| ..++++++|++|++++|. +...+...++++++|++|++++|.+....+.... ....++.|....|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999999887 468999999999999998 4444444488999999999999876543321110 22455555555544
Q ss_pred ceeeEEe-ecCchhhhhhhccc--------------cccccccEEEecccCCccccc--ccccC--CcceeEeccCcccc
Q 038405 653 IYEISIT-LGSASALFKINFSW--------------KLCSCIKRLTIMHNLDSHSID--LRNMM--HLETLNIVECSLER 713 (863)
Q Consensus 653 L~~l~~~-~~~~~~l~~l~~~~--------------~~~~~L~~L~l~~~~~~~~~~--l~~~~--~L~~L~l~~~~l~~ 713 (863)
+..++.. +..+..+..+.... -..++|+.|++++|......+ +..++ +|++|++++|.+..
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 4432211 11111111000000 011456666666655443322 44443 36666666666555
Q ss_pred cCCCCCCCCCCCCCCEEEEecCCCCCCC-cccccCCCcceEeeccC
Q 038405 714 VDPTFNGWTNFHNLHHLSIRVCPVIRDL-TWIREAPNLQFLSLVNC 758 (863)
Q Consensus 714 ~~~~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~ 758 (863)
+++. .+..+++|+.|++++|...... ..+..+++|+.|++++|
T Consensus 263 ~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 263 VGND--SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp ECTT--TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred cCcc--cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 5432 3345566666666666433322 23555555555555544
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=8.9e-22 Score=231.06 Aligned_cols=285 Identities=13% Similarity=0.183 Sum_probs=179.4
Q ss_pred ccccCCCC--CCCccEEEeecccccc------------------cchhhhh--cCCCccEEeccCCcCccccchhhhccc
Q 038405 512 IEYLPETP--CPHLQTLLVRFTVLEI------------------FPHRFFE--SMGALKVLDLSYNLDLTQLPAEMGALI 569 (863)
Q Consensus 512 ~~~l~~~~--~~~Lr~L~l~~~~l~~------------------l~~~~~~--~l~~L~~L~Ls~~~~i~~lp~~i~~L~ 569 (863)
+..+|... +++|++|++++|.+.. +|.. ++ ++++|++|+|++|.....+|..+++++
T Consensus 195 l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 33456554 8999999999999888 7876 66 899999999999966788999999999
Q ss_pred ccceeeccCCC-cc--ccchhhhcc------cCccEEecCCCCCccccch--hhhcCCCCCceeeccCcchhhhccCCCC
Q 038405 570 NLRCLNLSNTS-IE--ELPSEIMYL------KNLKILLLDGMRHFHLIPA--RVFSSLLSLKVFSLFSTELIELHRMPPN 638 (863)
Q Consensus 570 ~L~~L~L~~~~-i~--~lP~~i~~L------~~L~~L~l~~~~~l~~lp~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 638 (863)
+|++|++++|. ++ .+|..++++ ++|++|++++|. +..+|. . ++++++|++|++++|.+.+..+ ...
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS-LQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH-HTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh-hccCCCCCEEeCcCCcCccchh-hhC
Confidence 99999999997 88 499999887 999999999998 558997 5 8999999999999998773323 444
Q ss_pred ccccchhhhhhcccceeeEEeecCchh-hhhhhccc----------cc--cccccEEEecccCCccccc--cc-------
Q 038405 639 QTTILDELECLGNQIYEISITLGSASA-LFKINFSW----------KL--CSCIKRLTIMHNLDSHSID--LR------- 696 (863)
Q Consensus 639 ~~~~l~~L~~l~n~L~~l~~~~~~~~~-l~~l~~~~----------~~--~~~L~~L~l~~~~~~~~~~--l~------- 696 (863)
....|+.|....|.+..++..+..+.. ++.+..+. .. +++|+.|++++|......+ +.
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 556677776666666544433322222 22222111 11 1144555555544433221 22
Q ss_pred ccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcc-cc-------cCCCcceEeeccCcchhhhhccc
Q 038405 697 NMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTW-IR-------EAPNLQFLSLVNCQALSEIIESA 768 (863)
Q Consensus 697 ~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~-------~l~~L~~L~L~~~~~l~~i~~~~ 768 (863)
.+++|++|++++|.+..++.. .+..+++|+.|++++|.....++. +. .+++|+.|+|++|... .+|.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~--~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-- 505 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKE--LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD-- 505 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTH--HHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG--
T ss_pred cCCCCCEEECcCCccCcCCHH--HHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccCh--
Confidence 334555555555554443221 112345555555555543321111 11 1225555555555422 3332
Q ss_pred CCccccccC--ccCcccceecccccccccccccCccCCCCccEEeec
Q 038405 769 GSSEVAESH--NYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVT 813 (863)
Q Consensus 769 ~~~~~~~~~--~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~ 813 (863)
.. ..+++|+.|+|+++ +++.++.....+++|+.|+++
T Consensus 506 -------~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 506 -------DFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp -------GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECC
T ss_pred -------hhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECC
Confidence 22 25677777777764 444465555567777777764
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.2e-21 Score=210.88 Aligned_cols=256 Identities=17% Similarity=0.225 Sum_probs=200.6
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEec
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
+++|++|.+.++.+..++. +..+++|++|++++| .+..+|. +.++++|++|++++|.+..+| .+.++++|++|++
T Consensus 43 l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred cccccEEEEeCCccccchh--hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 7899999999999988875 789999999999999 8888887 999999999999999999987 5999999999999
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccc
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCI 679 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L 679 (863)
++|. +..+|. +..+++|++|++++|..... +..+..+. .|+.+.+.......... ...+++|
T Consensus 118 ~~n~-i~~~~~--~~~l~~L~~L~l~~n~~~~~----------~~~~~~l~-~L~~L~l~~~~~~~~~~----~~~l~~L 179 (347)
T 4fmz_A 118 NEDN-ISDISP--LANLTKMYSLNLGANHNLSD----------LSPLSNMT-GLNYLTVTESKVKDVTP----IANLTDL 179 (347)
T ss_dssp TTSC-CCCCGG--GTTCTTCCEEECTTCTTCCC----------CGGGTTCT-TCCEEECCSSCCCCCGG----GGGCTTC
T ss_pred cCCc-ccCchh--hccCCceeEEECCCCCCccc----------ccchhhCC-CCcEEEecCCCcCCchh----hccCCCC
Confidence 9998 667765 88999999999998753221 11122222 34444443333322222 3456789
Q ss_pred cEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeeccCc
Q 038405 680 KRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 680 ~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 759 (863)
+.|++++|.......+..+++|+.|++++|.+...++ +..+++|+.|++++|.. ..++.+..+++|+.|++++|.
T Consensus 180 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQ 254 (347)
T ss_dssp SEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC
T ss_pred CEEEccCCcccccccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCCc
Confidence 9999999988776668899999999999998877643 34789999999999964 455558999999999999996
Q ss_pred chhhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEeeccCC
Q 038405 760 ALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNCP 816 (863)
Q Consensus 760 ~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~ 816 (863)
. ..+ .....+++|+.|+++++ .++.++ ....+++|+.|++++|+
T Consensus 255 l-~~~----------~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 255 I-SDI----------NAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp C-CCC----------GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC
T ss_pred c-CCC----------hhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCc
Confidence 4 322 23567899999999987 566653 24567899999988763
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=6.3e-21 Score=215.82 Aligned_cols=295 Identities=17% Similarity=0.238 Sum_probs=195.4
Q ss_pred ccccccceEEEeccCCccccCCCC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhccccccee
Q 038405 496 ADSWREDFRLSLWGSSIEYLPETP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCL 574 (863)
Q Consensus 496 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 574 (863)
.....+++.+.+.++.+..++... +++|++|++++|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L 161 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQL 161 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEE
T ss_pred hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-ccCCChh-hccCCcccEe
Confidence 566678999999999998887654 9999999999999998876 889999999999999 6666653 5555555555
Q ss_pred eccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcc---
Q 038405 575 NLSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGN--- 651 (863)
Q Consensus 575 ~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n--- 651 (863)
+++ +.+..++. +.++++|++|++++|. +..++. +.++++|++|++++|.+....+ ......++.|....|
T Consensus 162 ~l~-~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 162 SFG-NQVTDLKP-LANLTTLERLDISSNK-VSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EEE-ESCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ecC-CcccCchh-hccCCCCCEEECcCCc-CCCChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 543 22333322 4444444444444444 333322 3444444444444443322211 111122222222222
Q ss_pred ---------cceeeEEeecCchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCC
Q 038405 652 ---------QIYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWT 722 (863)
Q Consensus 652 ---------~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 722 (863)
.|+.+.+.......... ...+++|+.|++++|.......+..+++|++|++++|.+.++++ +.
T Consensus 235 ~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~ 306 (466)
T 1o6v_A 235 DIGTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP----IS 306 (466)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG----GG
T ss_pred cchhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh----hc
Confidence 33344333332222221 34567899999999988776678899999999999999887654 34
Q ss_pred CCCCCCEEEEecCCCCCCCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCcc
Q 038405 723 NFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTM 802 (863)
Q Consensus 723 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~ 802 (863)
.+++|+.|++++|.. ...+.+..+++|+.|++++|.. ..+ .....+++|+.|+++++. +..+.. ..
T Consensus 307 ~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n~l-~~~----------~~l~~l~~L~~L~l~~n~-l~~~~~-~~ 372 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNI-SDISPVSSLTKLQRLFFYNNKV-SDV----------SSLANLTNINWLSAGHNQ-ISDLTP-LA 372 (466)
T ss_dssp GCTTCSEEECCSSCC-SCCGGGGGCTTCCEEECCSSCC-CCC----------GGGTTCTTCCEEECCSSC-CCBCGG-GT
T ss_pred CCCCCCEEECcCCcC-CCchhhccCccCCEeECCCCcc-CCc----------hhhccCCCCCEEeCCCCc-cCccch-hh
Confidence 789999999999965 4444588999999999999964 322 245678999999999874 444433 56
Q ss_pred CCCCccEEeeccCCCCCCCCCC
Q 038405 803 PFPSLQNVSVTNCPNLRELPFN 824 (863)
Q Consensus 803 ~~~~L~~L~i~~C~~L~~lp~~ 824 (863)
.+++|+.|.+++|+ ++.+|..
T Consensus 373 ~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 373 NLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp TCTTCCEEECCCEE-EECCCBC
T ss_pred cCCCCCEEeccCCc-ccCCchh
Confidence 68999999999874 5555543
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=2.2e-21 Score=231.01 Aligned_cols=234 Identities=18% Similarity=0.142 Sum_probs=162.0
Q ss_pred ccccccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhccccc
Q 038405 496 ADSWREDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINL 571 (863)
Q Consensus 496 ~~~~~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L 571 (863)
......++.+.+.+|.+..++... +++|++|++++|.+..+|...|..+++|++|++++| .+..+| ..++++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCC
Confidence 456678999999999998876543 999999999999999999988999999999999999 666665 679999999
Q ss_pred ceeeccCCCcccc-chhhhcccCccEEecCCCCCccccchhhhc--CCCCCceeeccCcchhhhccCCCCccccchhhhh
Q 038405 572 RCLNLSNTSIEEL-PSEIMYLKNLKILLLDGMRHFHLIPARVFS--SLLSLKVFSLFSTELIELHRMPPNQTTILDELEC 648 (863)
Q Consensus 572 ~~L~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~--~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 648 (863)
++|++++|.+..+ |..++++++|++|++++|. +..++...+. .+++|++|++++|.+....+........+..|..
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence 9999999998876 4568899999999999997 5566554344 5689999999998776554433323333332221
Q ss_pred hc-----------------ccceeeEEeecCchhhhhhhcccccc--ccccEEEecccCCccccc--ccccCCcceeEec
Q 038405 649 LG-----------------NQIYEISITLGSASALFKINFSWKLC--SCIKRLTIMHNLDSHSID--LRNMMHLETLNIV 707 (863)
Q Consensus 649 l~-----------------n~L~~l~~~~~~~~~l~~l~~~~~~~--~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~ 707 (863)
.. ..++.+.+......... ......+ ++|+.|++++|......+ +..+++|++|+++
T Consensus 203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~--~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS--NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC--TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred cccccChhhHHHHHHHhhhccccEEEccCCcccccC--hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 11 13333333222111110 0111112 347888888776655432 6777788888888
Q ss_pred cCcccccCCCCCCCCCCCCCCEEEEecC
Q 038405 708 ECSLERVDPTFNGWTNFHNLHHLSIRVC 735 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~l~~L~~L~L~~~ 735 (863)
+|.+.+..+. .+..+++|+.|++++|
T Consensus 281 ~n~l~~~~~~--~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 281 YNNIQHLFSH--SLHGLFNVRYLNLKRS 306 (680)
T ss_dssp SCCBSEECTT--TTTTCTTCCEEECTTC
T ss_pred CCccCccChh--hhcCCCCccEEeccch
Confidence 7776665432 3345556666666554
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=4.2e-21 Score=206.03 Aligned_cols=105 Identities=24% Similarity=0.367 Sum_probs=77.5
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEec
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
.++++.|++++|.+..+|.. +..+++|++|+|++| .+..+|..++++++|++|++++|.+..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 45677788888877777776 455888888888888 6667887788888888888888888888888888888888888
Q ss_pred CCCCCccccchhhhc---------CCCCCceeeccCc
Q 038405 600 DGMRHFHLIPARVFS---------SLLSLKVFSLFST 627 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~---------~L~~L~~L~l~~~ 627 (863)
++|.....+|.. ++ ++++|++|++++|
T Consensus 158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEE
T ss_pred CCCCCccccChh-HhhccchhhhccCCCCCEEECcCC
Confidence 887767777765 33 2555555555544
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=3.1e-21 Score=223.68 Aligned_cols=145 Identities=23% Similarity=0.283 Sum_probs=116.2
Q ss_pred EEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhcccccceeeccCCCccc
Q 038405 505 LSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLNLSNTSIEE 583 (863)
Q Consensus 505 l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~ 583 (863)
.+..++.++.+|....++|++|++++|.+..+++..|..+++|++|++++| .+..+| ..++++++|++|++++|.+..
T Consensus 10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCc
Confidence 455667888888877899999999999999988777999999999999999 666554 689999999999999999999
Q ss_pred cchh-hhcccCccEEecCCCCCccc--cchhhhcCCCCCceeeccCcc-hhhhccCCCCccccchhhhhhccc
Q 038405 584 LPSE-IMYLKNLKILLLDGMRHFHL--IPARVFSSLLSLKVFSLFSTE-LIELHRMPPNQTTILDELECLGNQ 652 (863)
Q Consensus 584 lP~~-i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~L~~l~n~ 652 (863)
+|.. ++++++|++|++++|. +.. .|.. ++++++|++|++++|. +..+..........++.|....|.
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred cCHHHhccCCCCcEEECCCCc-ccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 9876 9999999999999998 443 4544 8999999999999987 333333334344555555444433
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1e-20 Score=203.03 Aligned_cols=239 Identities=21% Similarity=0.240 Sum_probs=148.0
Q ss_pred cCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCcee
Q 038405 543 SMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVF 622 (863)
Q Consensus 543 ~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L 622 (863)
...++++|+|++| .+..+|..++++++|++|+|++|.+..+|..++++++|++|++++|. +..+|.. ++++++|++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEE
Confidence 4578999999999 88899999999999999999999999999999999999999999998 6688987 8999999999
Q ss_pred eccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccccEEEecccCCcccccccccCCcc
Q 038405 623 SLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLE 702 (863)
Q Consensus 623 ~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~ 702 (863)
++++|......+... .. ..+. ..+.++++|+
T Consensus 156 ~L~~n~~~~~~p~~~----------------~~--------------------------~~~~-------~~~~~l~~L~ 186 (328)
T 4fcg_A 156 SIRACPELTELPEPL----------------AS--------------------------TDAS-------GEHQGLVNLQ 186 (328)
T ss_dssp EEEEETTCCCCCSCS----------------EE--------------------------EC-C-------CCEEESTTCC
T ss_pred ECCCCCCccccChhH----------------hh--------------------------ccch-------hhhccCCCCC
Confidence 999875432211110 00 0000 0133445555
Q ss_pred eeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcc
Q 038405 703 TLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAY 782 (863)
Q Consensus 703 ~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~ 782 (863)
+|++++|.++.++. .+..+++|+.|++++|.....++.+..+++|++|+|++|.....+|. ....+++
T Consensus 187 ~L~L~~n~l~~lp~---~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~---------~~~~l~~ 254 (328)
T 4fcg_A 187 SLRLEWTGIRSLPA---SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP---------IFGGRAP 254 (328)
T ss_dssp EEEEEEECCCCCCG---GGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC---------CTTCCCC
T ss_pred EEECcCCCcCcchH---hhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH---------HhcCCCC
Confidence 55555555443322 23345555555555554433334455555555555555554443332 2334555
Q ss_pred cceecccccccccccccCccCCCCccEEeeccCCCCCCCCCCCCCCCCcceEEEchHhhhhcCc
Q 038405 783 LMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNCPNLRELPFNFDSAKNSLVSIRGSAEWWEQLQ 846 (863)
Q Consensus 783 L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~~~~~l~ 846 (863)
|+.|+|++|..+..++.....+++|+.|++++|+.+..+|..... ..++..+.....+...+.
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGSCC--
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHHHHHh
Confidence 555555555555555554455555666666666555555544332 244555554444444433
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=1.1e-20 Score=211.95 Aligned_cols=281 Identities=19% Similarity=0.207 Sum_probs=168.6
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEec
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
+++|++|++++|.+..+|. +..+++|++|++++| .+..+| ++.+++|++|++++|.+..+| ++++++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccChh--hcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 7899999999999998873 889999999999999 788887 899999999999999999986 899999999999
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcc-cceeeEEeecCchhhhhhhcc------
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGN-QIYEISITLGSASALFKINFS------ 672 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n-~L~~l~~~~~~~~~l~~l~~~------ 672 (863)
++|. +..+| ++++++|++|++++|.+..+. ......++.|....| .+..+ .+..++.++.+..+
T Consensus 114 ~~N~-l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 114 DTNK-LTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CSSC-CSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCc-CCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 9997 66676 789999999999999876642 223444555544443 11111 01111111111100
Q ss_pred --ccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCc
Q 038405 673 --WKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNL 750 (863)
Q Consensus 673 --~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 750 (863)
...+++|+.|++++|..... ++..+++|+.|++++|.+++++ +..+++|+.|++++|.... ++ ++.+++|
T Consensus 185 l~l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip-----~~~l~~L~~L~l~~N~l~~-~~-~~~l~~L 256 (457)
T 3bz5_A 185 LDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPLTE-LD-VSTLSKL 256 (457)
T ss_dssp CCCTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSC-CC-CTTCTTC
T ss_pred eccccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccC-----ccccCCCCEEEeeCCcCCC-cC-HHHCCCC
Confidence 12233444444444443322 2444455555555555444432 1234555555555553222 11 2233333
Q ss_pred ceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEeeccCCCCCCCCCCCCCC
Q 038405 751 QFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNCPNLRELPFNFDSA 828 (863)
Q Consensus 751 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~ 828 (863)
+.|+++++. ++.+.-.............+++|+.|++++++.+..++. .+++|+.|.+++|++|+.|.++.+..
T Consensus 257 ~~L~l~~n~-L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~~L~~L~L~~N~l 330 (457)
T 3bz5_A 257 TTLHCIQTD-LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNPKLVYLYLNNTEL 330 (457)
T ss_dssp CEEECTTCC-CSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCTTCCEEECTTCCC
T ss_pred CEEeccCCC-CCEEECCCCccCCcccccccccCCEEECCCCcccceecc---CCCcceEechhhcccCCEEECCCCcc
Confidence 333332221 111100000000001234567888888888877777664 34566667777777777776665543
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=4.8e-21 Score=204.31 Aligned_cols=242 Identities=17% Similarity=0.176 Sum_probs=138.3
Q ss_pred cceEEEeccCCcc---ccCCCC--CCCccEEEeec-cccc-ccchhhhhcCCCccEEeccCCcCcc-ccchhhhcccccc
Q 038405 501 EDFRLSLWGSSIE---YLPETP--CPHLQTLLVRF-TVLE-IFPHRFFESMGALKVLDLSYNLDLT-QLPAEMGALINLR 572 (863)
Q Consensus 501 ~~~~l~l~~~~~~---~l~~~~--~~~Lr~L~l~~-~~l~-~l~~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~~L~~L~ 572 (863)
+++.+.+.++.+. .+|... +++|++|++++ |.+. .+|. .|..+++|++|++++| .+. .+|..++++++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCC
Confidence 5666666666665 244433 66666666663 5444 3333 3566666666666666 343 6666666666666
Q ss_pred eeeccCCCcc-ccchhhhcccCccEEecCCCCCccccchhhhcCCC-CCceeeccCcchhhhccCCCCccccchhhhhhc
Q 038405 573 CLNLSNTSIE-ELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLL-SLKVFSLFSTELIELHRMPPNQTTILDELECLG 650 (863)
Q Consensus 573 ~L~L~~~~i~-~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~ 650 (863)
+|++++|.+. .+|..++++++|++|++++|.....+|.. +++++ +|++|++++|.+....+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~--------------- 192 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPP--------------- 192 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCG---------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCCh---------------
Confidence 6666666666 56666666666666666666633355655 55665 666666665543211000
Q ss_pred ccceeeEEeecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCC
Q 038405 651 NQIYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLH 728 (863)
Q Consensus 651 n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~ 728 (863)
....++ |+.|++++|......+ +..+++|+.|++++|.+....+. +..+++|+
T Consensus 193 ---------------------~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~ 247 (313)
T 1ogq_A 193 ---------------------TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLN 247 (313)
T ss_dssp ---------------------GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCC
T ss_pred ---------------------HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCC
Confidence 001112 6666666665543332 66667777777777766544221 23466777
Q ss_pred EEEEecCCCCCCC-cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccccccccc
Q 038405 729 HLSIRVCPVIRDL-TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLK 795 (863)
Q Consensus 729 ~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 795 (863)
+|++++|.....+ ..+..+++|++|+|++|.....+|. ...+++|+.+.+.+.+.+.
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~----------~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ----------GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC----------STTGGGSCGGGTCSSSEEE
T ss_pred EEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC----------CccccccChHHhcCCCCcc
Confidence 7777777554233 4566677777777777765444432 1445666666666555443
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=212.62 Aligned_cols=308 Identities=19% Similarity=0.162 Sum_probs=183.4
Q ss_pred ccccccceEEEeccCCccccCC-CC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccc--cchhhhcccc
Q 038405 496 ADSWREDFRLSLWGSSIEYLPE-TP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQ--LPAEMGALIN 570 (863)
Q Consensus 496 ~~~~~~~~~l~l~~~~~~~l~~-~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~--lp~~i~~L~~ 570 (863)
.....+++.+.+.+|.+..++. .. +++|++|++++|.+..+|.. .+++|++|++++| .+.. +|..++++++
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFN-AFDALPICKEFGNMSQ 116 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSS-CCSSCCCCGGGGGCTT
T ss_pred ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCC-ccccccchhhhccCCc
Confidence 4456789999999999988743 33 89999999999999999875 7999999999999 6654 6789999999
Q ss_pred cceeeccCCCccccchhhhcccCc--cEEecCCCCC--ccccchhhhc--------------------------CCCCCc
Q 038405 571 LRCLNLSNTSIEELPSEIMYLKNL--KILLLDGMRH--FHLIPARVFS--------------------------SLLSLK 620 (863)
Q Consensus 571 L~~L~L~~~~i~~lP~~i~~L~~L--~~L~l~~~~~--l~~lp~~~i~--------------------------~L~~L~ 620 (863)
|++|++++|.+.. ..+..+++| ++|++++|.. ....|.. +. ++++|+
T Consensus 117 L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 193 (520)
T 2z7x_B 117 LKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193 (520)
T ss_dssp CCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred ceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence 9999999999876 356777777 8888888764 2223322 22 233444
Q ss_pred eeeccCc---------------------------------------------------------chhhhccCCC-----C
Q 038405 621 VFSLFST---------------------------------------------------------ELIELHRMPP-----N 638 (863)
Q Consensus 621 ~L~l~~~---------------------------------------------------------~~~~~~~~~~-----~ 638 (863)
.|++++| .+.+..+... .
T Consensus 194 ~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 273 (520)
T 2z7x_B 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273 (520)
T ss_dssp ECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred eccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccc
Confidence 4444333 2211101100 1
Q ss_pred ccccchhhhhhccc----------------ceeeEEeecCchhhhhhhccccccccccEEEecccCCcccc--cccccCC
Q 038405 639 QTTILDELECLGNQ----------------IYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSI--DLRNMMH 700 (863)
Q Consensus 639 ~~~~l~~L~~l~n~----------------L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~ 700 (863)
....++.+....|. ++.+.+.-....... ....+++|+.|++++|...... .+..+++
T Consensus 274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML----CPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349 (520)
T ss_dssp CCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC----CCSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred cCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc----chhhCCcccEEEeECCccChhhhhhhccCCC
Confidence 11111111111110 111111111100000 0135667888888887766532 2677778
Q ss_pred cceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCc--ccccCCCcceEeeccCcchhhhhcccC--C------
Q 038405 701 LETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLT--WIREAPNLQFLSLVNCQALSEIIESAG--S------ 770 (863)
Q Consensus 701 L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~--~------ 770 (863)
|++|++++|.+.+++.....+..+++|+.|++++|.....++ .+..+++|+.|++++|.....++.... .
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls 429 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECC
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECC
Confidence 888888888776532110023457777777777776544233 256667777777777765444332211 0
Q ss_pred ----ccccccCccCcccceecccccccccccccC-ccCCCCccEEeeccC
Q 038405 771 ----SEVAESHNYFAYLMVIDLDSLPSLKRICHG-TMPFPSLQNVSVTNC 815 (863)
Q Consensus 771 ----~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~L~~L~i~~C 815 (863)
...+.....+++|+.|+++++ +++.++.. ...+++|+.|+++++
T Consensus 430 ~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 430 SNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp SSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCC
Confidence 111222346778888888876 56666554 334555555555554
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=224.74 Aligned_cols=300 Identities=17% Similarity=0.156 Sum_probs=206.6
Q ss_pred eEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCCc
Q 038405 503 FRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTSI 581 (863)
Q Consensus 503 ~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i 581 (863)
+.+..+++.++.+|. ..+++++|++++|.+..+++..|..+++|++|+|++|..+..+ |..|+++++|++|+|++|.|
T Consensus 7 ~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred eEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 345666778888888 7899999999999999988777999999999999999666666 77899999999999999999
Q ss_pred ccc-chhhhcccCccEEecCCCCCccccch-hhhcCCCCCceeeccCcchhhhccC-CCCccccchhhhhhcccceeeEE
Q 038405 582 EEL-PSEIMYLKNLKILLLDGMRHFHLIPA-RVFSSLLSLKVFSLFSTELIELHRM-PPNQTTILDELECLGNQIYEISI 658 (863)
Q Consensus 582 ~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~L~~l~n~L~~l~~ 658 (863)
..+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.+....+. .+....+|+.|....|.+.....
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 987 77899999999999999984443443 3488999999999999987654332 22344455555544444432211
Q ss_pred e-ecCc--hhhhhhhcc-----------ccccc------cccEEEecccCCccccc------------------------
Q 038405 659 T-LGSA--SALFKINFS-----------WKLCS------CIKRLTIMHNLDSHSID------------------------ 694 (863)
Q Consensus 659 ~-~~~~--~~l~~l~~~-----------~~~~~------~L~~L~l~~~~~~~~~~------------------------ 694 (863)
. +..+ ..+..+..+ +..+. .|+.|++++|.......
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 0 0000 111111111 11112 37888888774321110
Q ss_pred --------------ccc--cCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCC-cccccCCCcceEeecc
Q 038405 695 --------------LRN--MMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDL-TWIREAPNLQFLSLVN 757 (863)
Q Consensus 695 --------------l~~--~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~ 757 (863)
+.+ .++|+.|++++|.+..+.+. .+..+++|+.|+|++|...... ..+..+++|++|+|++
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR--VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC--CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChh--hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 111 26899999999988777544 4668899999999999765443 3578899999999999
Q ss_pred CcchhhhhcccCCccccccCccCcccceeccccccccccccc-CccCCCCccEEeeccC
Q 038405 758 CQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICH-GTMPFPSLQNVSVTNC 815 (863)
Q Consensus 758 ~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~-~~~~~~~L~~L~i~~C 815 (863)
|......+ .....+++|+.|+++++ .+..+.. ....+++|+.|++++|
T Consensus 324 N~l~~~~~---------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 324 NLLGELYS---------SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CCCSCCCS---------CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred CCCCccCH---------HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence 97432222 24456778888877765 3444433 2334566666666654
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=2.7e-20 Score=198.57 Aligned_cols=253 Identities=17% Similarity=0.159 Sum_probs=201.5
Q ss_pred CCccEEEeecccccc---cchhhhhcCCCccEEeccC-CcCccccchhhhcccccceeeccCCCcc-ccchhhhcccCcc
Q 038405 521 PHLQTLLVRFTVLEI---FPHRFFESMGALKVLDLSY-NLDLTQLPAEMGALINLRCLNLSNTSIE-ELPSEIMYLKNLK 595 (863)
Q Consensus 521 ~~Lr~L~l~~~~l~~---l~~~~~~~l~~L~~L~Ls~-~~~i~~lp~~i~~L~~L~~L~L~~~~i~-~lP~~i~~L~~L~ 595 (863)
.+++.|++++|.+.. +|.. +..+++|++|++++ |.....+|..++++++|++|++++|.+. .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999998874 6654 88999999999995 6445589999999999999999999998 8899999999999
Q ss_pred EEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccc
Q 038405 596 ILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKL 675 (863)
Q Consensus 596 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~ 675 (863)
+|++++|.....+|.. ++++++|++|++++|.+.+..+. ....
T Consensus 129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~------------------------------------~l~~ 171 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPD------------------------------------SYGS 171 (313)
T ss_dssp EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCG------------------------------------GGGC
T ss_pred EEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCCH------------------------------------HHhh
Confidence 9999999855577876 89999999999998765321110 0111
Q ss_pred cc-cccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcce
Q 038405 676 CS-CIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQF 752 (863)
Q Consensus 676 ~~-~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 752 (863)
++ .|+.|++++|......+ +..++ |+.|++++|.+.+..+. .+..+++|+.|++++|.....++.+..+++|++
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~ 248 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV--LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG--GCCTTSCCSEEECCSSEECCBGGGCCCCTTCCE
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH--HHhcCCCCCEEECCCCceeeecCcccccCCCCE
Confidence 22 68889998887654332 66766 99999999998766443 456799999999999977666777889999999
Q ss_pred EeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEeeccCCCCCCCCCC
Q 038405 753 LSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNCPNLRELPFN 824 (863)
Q Consensus 753 L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~ 824 (863)
|+|++|.....+|. ....+++|+.|+++++.--..++.. ..+++|+.+.+.+++.|...|..
T Consensus 249 L~Ls~N~l~~~~p~---------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQ---------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp EECCSSCCEECCCG---------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS
T ss_pred EECcCCcccCcCCh---------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCC
Confidence 99999986545543 4567899999999987544456554 67889999999998888776653
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=4.1e-20 Score=196.86 Aligned_cols=239 Identities=19% Similarity=0.198 Sum_probs=167.6
Q ss_pred EEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc---chhhhcccccceeeccCCC
Q 038405 504 RLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL---PAEMGALINLRCLNLSNTS 580 (863)
Q Consensus 504 ~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l---p~~i~~L~~L~~L~L~~~~ 580 (863)
.+...++.++.+|....++|++|++++|.+..+|..+|..+++|++|++++| .+... |..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCc
Confidence 5677777888888877889999999999999999988899999999999999 66544 6778889999999999999
Q ss_pred ccccchhhhcccCccEEecCCCCCccccch-hhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEe
Q 038405 581 IEELPSEIMYLKNLKILLLDGMRHFHLIPA-RVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISIT 659 (863)
Q Consensus 581 i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~ 659 (863)
+..+|..+..+++|++|++++|. +..++. ..+.++++|++|++++|.+....+...
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------------------- 146 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF---------------------- 146 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT----------------------
T ss_pred cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhc----------------------
Confidence 99999999999999999999987 566654 458899999999999876543322211
Q ss_pred ecCchhhhhhhccccccccccEEEecccCCcc--cc-cccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCC
Q 038405 660 LGSASALFKINFSWKLCSCIKRLTIMHNLDSH--SI-DLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCP 736 (863)
Q Consensus 660 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~--~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 736 (863)
..+++|+.|++++|.... .+ .+..+++|++|++++|.+.++++. .+..+++|+.|++++|.
T Consensus 147 --------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 147 --------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT--AFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp --------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSC
T ss_pred --------------ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH--HhcCCCCCCEEECCCCc
Confidence 123355666666655433 11 256666677777777766665433 34456667777776665
Q ss_pred CCCCCc-ccccCCCcceEeeccCcchhhhhcccCCccccccCccCc-ccceeccccc
Q 038405 737 VIRDLT-WIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFA-YLMVIDLDSL 791 (863)
Q Consensus 737 ~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~-~L~~L~L~~~ 791 (863)
.....+ .+..+++|+.|+|++|......+ .....++ +|+.|+++++
T Consensus 211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKK---------QELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CSBCCSGGGTTCTTCCEEECTTSCCCBCSS---------SSCCCCCTTCCEEECTTC
T ss_pred cCccChhhccCcccCCEeECCCCCCcccCH---------HHHHhhhccCCEEEccCC
Confidence 433322 35666777777777665433222 1223343 6666666654
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=6.9e-20 Score=212.60 Aligned_cols=141 Identities=16% Similarity=0.114 Sum_probs=88.0
Q ss_pred cccccccEEEecccCCcccc--cccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCc--ccccCCC
Q 038405 674 KLCSCIKRLTIMHNLDSHSI--DLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLT--WIREAPN 749 (863)
Q Consensus 674 ~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~ 749 (863)
..+++|+.|++++|...... .+..+++|+.|++++|.+++++.....+..+++|+.|++++|.....++ .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 34567888888888776533 2788889999999999887653211134578889999998887655233 3667788
Q ss_pred cceEeeccCcchhhhhcccC--C----------ccccccCccCcccceecccccccccccccC-ccCCCCccEEeeccC
Q 038405 750 LQFLSLVNCQALSEIIESAG--S----------SEVAESHNYFAYLMVIDLDSLPSLKRICHG-TMPFPSLQNVSVTNC 815 (863)
Q Consensus 750 L~~L~L~~~~~l~~i~~~~~--~----------~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~L~~L~i~~C 815 (863)
|+.|++++|.....++.... . ..+......+++|+.|+++++ +++.++.. ...+++|+.|+++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCC
Confidence 88888888775444443221 0 111222336677788887774 45555544 333444444444443
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=1.1e-20 Score=202.00 Aligned_cols=267 Identities=15% Similarity=0.149 Sum_probs=173.4
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEec
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
+++|++|++++|.+..+++..|..+++|++|+|++| .+...+. ++.+++|++|++++|.++.+|. +++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 568889999988888888777888899999999988 6665555 8888899999999988887763 478889999
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccc
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCI 679 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L 679 (863)
++|. +..++.. .+++|++|++++|.+....+........++.|....|.+..+... . ....+++|
T Consensus 107 ~~n~-l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~---~~~~l~~L 171 (317)
T 3o53_A 107 ANNN-ISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA--------E---LAASSDTL 171 (317)
T ss_dssp CSSC-CSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG--------G---GGGGTTTC
T ss_pred CCCc-cCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH--------H---HhhccCcC
Confidence 8887 5555543 467888888888877655444333344444444444444332210 0 01124567
Q ss_pred cEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeeccCc
Q 038405 680 KRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 680 ~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 759 (863)
+.|++++|..........+++|++|++++|.+..+++ .+..+++|+.|++++|.....++.+..+++|+.|++++|.
T Consensus 172 ~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP---EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG---GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CEEECCCCcCcccccccccccCCEEECCCCcCCcchh---hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 7777777766555545556777777777777766644 2445677777777777544333456677777777777776
Q ss_pred ch-hhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEeeccCCCCC
Q 038405 760 AL-SEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNCPNLR 819 (863)
Q Consensus 760 ~l-~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~ 819 (863)
.. ..++. ....+++|+.+.+.+++.++.........+.+....-..|..|.
T Consensus 249 ~~~~~~~~---------~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 249 FHCGTLRD---------FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp CBHHHHHH---------HHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred ccCcCHHH---------HHhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 54 22222 23446677777776666666554444444444444444555554
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=2e-19 Score=202.61 Aligned_cols=239 Identities=16% Similarity=0.165 Sum_probs=159.1
Q ss_pred eEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCCc
Q 038405 503 FRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTSI 581 (863)
Q Consensus 503 ~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i 581 (863)
..+...+..+..+|....+++++|++++|.+..+++..|..+++|++|+|++| .+..+ |..+.++++|++|+|++|.+
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcC
Confidence 34555666666777666677777777777777776666777777888888777 45544 35677777778888877777
Q ss_pred cccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcc-hhhhccCCCCccccchhhhhhcccceeeEEe
Q 038405 582 EELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTE-LIELHRMPPNQTTILDELECLGNQIYEISIT 659 (863)
Q Consensus 582 ~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~ 659 (863)
..+|.. +..+++|++|++++|. +..+|...+.++++|++|++++|. +..+....+....+|+.|....|.+..++
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 212 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-- 212 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--
T ss_pred CccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--
Confidence 777655 6677777888877776 566666667777777777777643 22222222223334444444443333221
Q ss_pred ecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCC
Q 038405 660 LGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPV 737 (863)
Q Consensus 660 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~ 737 (863)
....+++|+.|++++|......+ +.++++|+.|++++|.+..+.+. .+..+++|+.|+|++|..
T Consensus 213 ------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 213 ------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN--AFDGLASLVELNLAHNNL 278 (452)
T ss_dssp ------------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCC
T ss_pred ------------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH--HhcCCCCCCEEECCCCcC
Confidence 12345578888888887765543 77888888888888887777554 456778888888888854
Q ss_pred CCCC-cccccCCCcceEeeccCc
Q 038405 738 IRDL-TWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 738 ~~~l-~~l~~l~~L~~L~L~~~~ 759 (863)
...+ ..+..+++|+.|+|++|+
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccChHHhccccCCCEEEccCCC
Confidence 4333 236778888888888775
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=201.39 Aligned_cols=239 Identities=18% Similarity=0.249 Sum_probs=157.8
Q ss_pred eEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhcccccceeeccCCCc
Q 038405 503 FRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLNLSNTSI 581 (863)
Q Consensus 503 ~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i 581 (863)
..+...+..+..+|....++++.|++++|.+..++...|..+++|++|+|++| .+..++ ..+.++++|++|+|++|.|
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcC
Confidence 45566666777777766777888888888777777666777888888888887 555444 5677788888888888888
Q ss_pred cccch-hhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcc-hhhhccCCCCccccchhhhhhcccceeeEEe
Q 038405 582 EELPS-EIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTE-LIELHRMPPNQTTILDELECLGNQIYEISIT 659 (863)
Q Consensus 582 ~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~ 659 (863)
+.+|. .+..+++|++|++++|. +..+|...+.++++|++|++.+|. +..+....+....+|+.|....|.+..++
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 201 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-- 201 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred CeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--
Confidence 77776 37778888888888776 666666667778888888887643 22222222223334444444443333222
Q ss_pred ecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCC
Q 038405 660 LGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPV 737 (863)
Q Consensus 660 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~ 737 (863)
....+++|+.|++++|......+ +..+++|++|++++|.+..+++. .+..+++|+.|+|++|..
T Consensus 202 ------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 202 ------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN--AFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp ------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--SSTTCTTCCEEECTTSCC
T ss_pred ------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh--hhcCCCCCCEEECCCCCC
Confidence 12234567777777776655432 67777888888888777766543 455677788888877754
Q ss_pred CCCC-cccccCCCcceEeeccCc
Q 038405 738 IRDL-TWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 738 ~~~l-~~l~~l~~L~~L~L~~~~ 759 (863)
...+ ..+..+++|+.|+|++|+
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSC
T ss_pred CccChhHhccccCCCEEEcCCCC
Confidence 4333 235677788888877765
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=197.04 Aligned_cols=122 Identities=19% Similarity=0.243 Sum_probs=102.1
Q ss_pred EEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCCccc
Q 038405 505 LSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTSIEE 583 (863)
Q Consensus 505 l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~ 583 (863)
....++.++.+|....++|++|++++|.+..++...|..+++|++|++++| .+..+ |..++++++|++|++++|.++.
T Consensus 36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 566677888888877788999999999888888877888999999999998 66655 5568899999999999999998
Q ss_pred cchh-hhcccCccEEecCCCCCccccch-hhhcCCCCCceeeccCcc
Q 038405 584 LPSE-IMYLKNLKILLLDGMRHFHLIPA-RVFSSLLSLKVFSLFSTE 628 (863)
Q Consensus 584 lP~~-i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~ 628 (863)
+|.. ++++++|++|++++|. +..+|. ..+.++++|++|++++|.
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCc
Confidence 8877 7889999999999987 667776 458889999999998763
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=7.9e-19 Score=202.71 Aligned_cols=255 Identities=20% Similarity=0.199 Sum_probs=163.2
Q ss_pred cceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCC
Q 038405 501 EDFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~ 580 (863)
.++.+++.++.++.+|....++|++|++++|.++.+|. .+++|++|+|++| .++.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCc
Confidence 35677777777777777666788888888887777776 4677888888888 6777776 66778888888888
Q ss_pred ccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEee
Q 038405 581 IEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITL 660 (863)
Q Consensus 581 i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~ 660 (863)
|+.+|. .+++|++|++++|. +..+|.. +++|++|++++|.+..++. ...++..|....|.+..++
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~--- 177 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP--- 177 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC---
T ss_pred CCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc---
Confidence 888776 56778888888776 6666653 4778888888776654321 1233444444444443322
Q ss_pred cCchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCC
Q 038405 661 GSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRD 740 (863)
Q Consensus 661 ~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 740 (863)
..+++|+.|++++|.....+. .+++|+.|++++|.++.++. .+++|+.|++++|.. +.
T Consensus 178 -------------~~~~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~~------~~~~L~~L~Ls~N~L-~~ 235 (622)
T 3g06_A 178 -------------MLPSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRL-TS 235 (622)
T ss_dssp -------------CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCC------CCTTCCEEECCSSCC-SC
T ss_pred -------------ccCCCCcEEECCCCCCCCCCC--ccchhhEEECcCCcccccCC------CCCCCCEEEccCCcc-Cc
Confidence 123567777777766544322 23567777777776665543 246677777777643 33
Q ss_pred CcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEeeccCC
Q 038405 741 LTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNCP 816 (863)
Q Consensus 741 l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~ 816 (863)
+| ..+++|+.|+|++|. +..+|. .+++|+.|+|+++ +++.++.....+++|+.|++++++
T Consensus 236 lp--~~l~~L~~L~Ls~N~-L~~lp~------------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 236 LP--VLPSELKELMVSGNR-LTSLPM------------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CC--CCCTTCCEEECCSSC-CSCCCC------------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CC--CCCCcCcEEECCCCC-CCcCCc------------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 44 455677777777764 333321 4566777777665 555665555566777777776654
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=1.1e-18 Score=183.58 Aligned_cols=219 Identities=20% Similarity=0.221 Sum_probs=177.1
Q ss_pred eEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCC-
Q 038405 503 FRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTS- 580 (863)
Q Consensus 503 ~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~- 580 (863)
+.+...++.+..+|....++|++|++++|.+..++...|..+++|++|++++| .+..+ |..++++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCC
Confidence 46777778888888777889999999999999999888999999999999999 66655 7789999999999999996
Q ss_pred cccc-chhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEe
Q 038405 581 IEEL-PSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISIT 659 (863)
Q Consensus 581 i~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~ 659 (863)
+..+ |..+..+++|++|++++|. +..++...+.++++|++|++++|.+..+....
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------------------- 148 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDT----------------------- 148 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----------------------
T ss_pred ccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhH-----------------------
Confidence 8888 6679999999999999998 55665555899999999999987654322110
Q ss_pred ecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCC
Q 038405 660 LGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPV 737 (863)
Q Consensus 660 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~ 737 (863)
...+++|+.|++++|....... +..+++|++|++++|.+.++.+. .+..+++|+.|++++|..
T Consensus 149 -------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 149 -------------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH--AFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp -------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCC
T ss_pred -------------hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh--HccCcccccEeeCCCCcC
Confidence 1234578888888887665543 78889999999999998887554 456789999999999965
Q ss_pred CCCCc-ccccCCCcceEeeccCcch
Q 038405 738 IRDLT-WIREAPNLQFLSLVNCQAL 761 (863)
Q Consensus 738 ~~~l~-~l~~l~~L~~L~L~~~~~l 761 (863)
...++ .+..+++|+.|+|++|+..
T Consensus 214 ~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 214 SALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CcCCHHHcccCcccCEEeccCCCcc
Confidence 54443 4788999999999998753
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1e-18 Score=206.38 Aligned_cols=129 Identities=24% Similarity=0.221 Sum_probs=112.5
Q ss_pred ccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceee
Q 038405 500 REDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLN 575 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~ 575 (863)
..+++|.+++|.++.++... +++|++|++++|.+..++++.|.++++|++|+|++| .++.+|. .|++|.+|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 47899999999999998653 899999999999999999988999999999999999 7888875 589999999999
Q ss_pred ccCCCccccchh-hhcccCccEEecCCCCCcc-ccchhhhcCCCCCceeeccCcchh
Q 038405 576 LSNTSIEELPSE-IMYLKNLKILLLDGMRHFH-LIPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 576 L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
+++|.++.+|.. ++++++|++|++++|.... .+|.. ++.+++|++|++++|.+.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccc
Confidence 999999999875 8999999999999997322 23544 889999999999987653
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=2.6e-18 Score=185.07 Aligned_cols=263 Identities=19% Similarity=0.210 Sum_probs=197.3
Q ss_pred ccceEEEeccCCccccCCC-C--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeec
Q 038405 500 REDFRLSLWGSSIEYLPET-P--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNL 576 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~-~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 576 (863)
+.++.+.+.+|.+..++.. . +++|++|++++|.+..+++..|..+++|++|++++| .+..+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEEC
Confidence 5789999999999988653 2 899999999999999997777999999999999999 8889998776 89999999
Q ss_pred cCCCccccchh-hhcccCccEEecCCCCCcc-ccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccce
Q 038405 577 SNTSIEELPSE-IMYLKNLKILLLDGMRHFH-LIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIY 654 (863)
Q Consensus 577 ~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~ 654 (863)
++|.+..+|.. +.++++|++|++++|.... ..+...+..+ +|++|++++|.+..+.... ...++.|....|.+.
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS---CSSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc---cCCCCEEECCCCcCC
Confidence 99999999875 8999999999999997421 1333447777 9999999999876653322 245666655555444
Q ss_pred eeEEeecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEE
Q 038405 655 EISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSI 732 (863)
Q Consensus 655 ~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L 732 (863)
.++. .....+++|+.|++++|......+ +..+++|++|++++|.+..++. .+..+++|+.|++
T Consensus 207 ~~~~------------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~---~l~~l~~L~~L~l 271 (332)
T 2ft3_A 207 AIEL------------EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA---GLPDLKLLQVVYL 271 (332)
T ss_dssp CCCT------------TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT---TGGGCTTCCEEEC
T ss_pred ccCH------------HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh---hhhcCccCCEEEC
Confidence 3221 123346789999999998766553 8889999999999999887755 3567999999999
Q ss_pred ecCCCCCCCc-ccc------cCCCcceEeeccCcchh-hhhcccCCccccccCccCcccceecccccc
Q 038405 733 RVCPVIRDLT-WIR------EAPNLQFLSLVNCQALS-EIIESAGSSEVAESHNYFAYLMVIDLDSLP 792 (863)
Q Consensus 733 ~~~~~~~~l~-~l~------~l~~L~~L~L~~~~~l~-~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 792 (863)
++|......+ .+. ..++|+.|++++|+... .++ ......+++|+.+.+.++.
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~--------~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ--------PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC--------GGGGTTBCCSTTEEC----
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccC--------cccccccchhhhhhccccc
Confidence 9996543321 222 25789999999998531 111 1234567778887777653
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=1e-17 Score=180.28 Aligned_cols=240 Identities=19% Similarity=0.189 Sum_probs=187.4
Q ss_pred ccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeec
Q 038405 500 REDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNL 576 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 576 (863)
..++.+.+.+|.+..++... +++|++|++++|.+..+++..|..+++|++|++++| .+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEEC
Confidence 47889999999999987642 899999999999999987777999999999999999 7888988765 79999999
Q ss_pred cCCCccccchh-hhcccCccEEecCCCCCcc-ccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccce
Q 038405 577 SNTSIEELPSE-IMYLKNLKILLLDGMRHFH-LIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIY 654 (863)
Q Consensus 577 ~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~ 654 (863)
++|.+..+|.. +.++++|++|++++|.... ..+...+.++++|++|++++|.+..+.... ...++.|....|.+.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCC
Confidence 99999998765 8999999999999997422 133344899999999999998876543222 245555555555444
Q ss_pred eeEEeecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEE
Q 038405 655 EISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSI 732 (863)
Q Consensus 655 ~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L 732 (863)
.+. ......+++|+.|++++|....... +..+++|++|++++|.+..++. .+..+++|+.|++
T Consensus 206 ~~~------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~---~l~~l~~L~~L~l 270 (330)
T 1xku_A 206 KVD------------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG---GLADHKYIQVVYL 270 (330)
T ss_dssp EEC------------TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT---TTTTCSSCCEEEC
T ss_pred ccC------------HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh---hhccCCCcCEEEC
Confidence 331 1123346789999999998776553 8889999999999999887754 3557899999999
Q ss_pred ecCCCCCCCc-cc------ccCCCcceEeeccCcc
Q 038405 733 RVCPVIRDLT-WI------REAPNLQFLSLVNCQA 760 (863)
Q Consensus 733 ~~~~~~~~l~-~l------~~l~~L~~L~L~~~~~ 760 (863)
++|......+ .+ ...++|+.|++++|+.
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 9996543321 12 2358899999999974
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=5.5e-18 Score=190.12 Aligned_cols=243 Identities=18% Similarity=0.192 Sum_probs=188.3
Q ss_pred CccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhcccccceeeccCCCccccc-hhhhcccCccEEec
Q 038405 522 HLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLNLSNTSIEELP-SEIMYLKNLKILLL 599 (863)
Q Consensus 522 ~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~l 599 (863)
..+.++..+..+..+|..+ .+++++|+|++| .+..++ ..+.++++|++|+|++|.|..++ ..+.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI---STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC---CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCCCC---CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4567777788899999763 378999999999 666654 68999999999999999999887 56899999999999
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhc-ccceeeEEeecCchhhhhhhcccccccc
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLG-NQIYEISITLGSASALFKINFSWKLCSC 678 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~-n~L~~l~~~~~~~~~l~~l~~~~~~~~~ 678 (863)
++|. +..+|.+.+..+++|++|++++|.+..+....+....+|+.|.... +.+..++ ......+++
T Consensus 120 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------------~~~~~~l~~ 186 (440)
T 3zyj_A 120 FDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS------------EGAFEGLSN 186 (440)
T ss_dssp CSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC------------TTTTTTCSS
T ss_pred CCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC------------cchhhcccc
Confidence 9997 7788887799999999999999988766554444444454444333 1222111 012345678
Q ss_pred ccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCC-cccccCCCcceEeecc
Q 038405 679 IKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDL-TWIREAPNLQFLSLVN 757 (863)
Q Consensus 679 L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~ 757 (863)
|+.|++++|.....+.+..+++|++|++++|.+..+.+. .+..+++|+.|++++|...... ..+..+++|+.|+|++
T Consensus 187 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPG--SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred cCeecCCCCcCccccccCCCcccCEEECCCCccCccChh--hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 999999999888777789999999999999998888654 5678999999999999654433 4578899999999999
Q ss_pred CcchhhhhcccCCccccccCccCcccceecccccc
Q 038405 758 CQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLP 792 (863)
Q Consensus 758 ~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 792 (863)
|.. ..++. .....+++|+.|+|++.|
T Consensus 265 N~l-~~~~~--------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 265 NNL-TLLPH--------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp SCC-CCCCT--------TTTSSCTTCCEEECCSSC
T ss_pred CCC-CccCh--------hHhccccCCCEEEcCCCC
Confidence 974 44432 234568899999998654
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=6.2e-19 Score=191.78 Aligned_cols=246 Identities=20% Similarity=0.266 Sum_probs=173.7
Q ss_pred ccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceee
Q 038405 500 REDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLN 575 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~ 575 (863)
+.++.+.+.+|.+..++... +++|++|++++|.+..+++..|..+++|++|++++| .+..+|.. ++++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 47899999999999988732 999999999999999998888999999999999999 78888876 89999999999
Q ss_pred ccCCCccccch--hhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccc
Q 038405 576 LSNTSIEELPS--EIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQI 653 (863)
Q Consensus 576 L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L 653 (863)
+++|.+..+|. .+.++++|++|++++|..+..++...++++++|++|++++|.+....+...
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---------------- 194 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL---------------- 194 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT----------------
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH----------------
Confidence 99999999997 689999999999999966777776669999999999999876544322211
Q ss_pred eeeEEeecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCC-CCCCCCCCCCEE
Q 038405 654 YEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTF-NGWTNFHNLHHL 730 (863)
Q Consensus 654 ~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~l~~L~~L 730 (863)
..+++|+.|++++|....... +..+++|+.|++++|.+.+.++.. ......+.++.+
T Consensus 195 --------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 195 --------------------KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp --------------------TTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred --------------------hccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcc
Confidence 123355566666655433322 344566777777777665543211 011234556666
Q ss_pred EEecCCCCCC-----CcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccccc
Q 038405 731 SIRVCPVIRD-----LTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSL 791 (863)
Q Consensus 731 ~L~~~~~~~~-----l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~ 791 (863)
++.++..... +.++..+++|+.|+|++|.. ..+|. .....+++|+.|+++++
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~--------~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPD--------GIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCCCT--------TTTTTCTTCCEEECCSS
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCCCC-CccCH--------HHHhcCCCCCEEEeeCC
Confidence 6666643221 12355667777777776653 33332 11245666777776654
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=8.1e-19 Score=198.70 Aligned_cols=218 Identities=17% Similarity=0.142 Sum_probs=135.0
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEec
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
+++|++|++++|.+..+++..|..+++|++|+|++| .+...++ ++.+++|++|+|++|.|..+|. .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 457888888888888887777888888888888888 5665554 8888888888888888887774 378888888
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccc
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCI 679 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L 679 (863)
++|. +..+|.. .+++|++|++++|.+....+........|+.|....|.+..... .. ....+++|
T Consensus 107 ~~N~-l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~---l~~~l~~L 171 (487)
T 3oja_A 107 ANNN-ISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF--------AE---LAASSDTL 171 (487)
T ss_dssp CSSC-CCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG--------GG---GGGGTTTC
T ss_pred cCCc-CCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh--------HH---HhhhCCcc
Confidence 8887 5555543 46788888888877655433333233333333333333322110 00 00123456
Q ss_pred cEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeeccCc
Q 038405 680 KRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 680 ~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 759 (863)
+.|++++|......+...+++|+.|++++|.++++++ .+..+++|+.|++++|.....++.+..+++|+.|++++|.
T Consensus 172 ~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP---EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG---GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cEEecCCCccccccccccCCCCCEEECCCCCCCCCCH---hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 6666666655544444455666666666666655544 2335566666666666444333445556666666666665
Q ss_pred ch
Q 038405 760 AL 761 (863)
Q Consensus 760 ~l 761 (863)
..
T Consensus 249 l~ 250 (487)
T 3oja_A 249 FH 250 (487)
T ss_dssp BC
T ss_pred Cc
Confidence 43
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=2.6e-18 Score=202.84 Aligned_cols=127 Identities=19% Similarity=0.186 Sum_probs=111.8
Q ss_pred EEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceeeccCCCcc
Q 038405 504 RLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLNLSNTSIE 582 (863)
Q Consensus 504 ~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~ 582 (863)
.++-.+..+..+|....+++++|+|++|.++.+|+..|.++++|++|+|++| .+..+|+ .|++|++|++|+|++|+|+
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 3444555677888777789999999999999999988999999999999999 7887765 6899999999999999999
Q ss_pred ccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhh
Q 038405 583 ELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIEL 632 (863)
Q Consensus 583 ~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 632 (863)
.+|.. +.+|++|++|++++|. +..+|...|+++++|++|++++|.+...
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccC
Confidence 99865 7999999999999997 7788877799999999999999886543
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=8.1e-18 Score=188.53 Aligned_cols=269 Identities=20% Similarity=0.183 Sum_probs=138.2
Q ss_pred ccceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCC
Q 038405 500 REDFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNT 579 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 579 (863)
..++.+.+.+|.+..+|.. +++|++|++++|.+..++.. .++|++|++++| .+..+| .++++++|++|++++|
T Consensus 91 ~~L~~L~l~~n~l~~lp~~-~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL-PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC-CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCccccc-cCCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCC
Confidence 3566777777776665532 46677777777766655431 256777777777 556666 4677777777777777
Q ss_pred CccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEe
Q 038405 580 SIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISIT 659 (863)
Q Consensus 580 ~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~ 659 (863)
.++.+|..+ .+|++|++++|. +..+| . ++++++|++|++++|.+.++... ...++.|....|.+..++ .
T Consensus 164 ~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~-~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp-~ 232 (454)
T 1jl5_A 164 SLKKLPDLP---PSLEFIAAGNNQ-LEELP-E-LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP-E 232 (454)
T ss_dssp CCSCCCCCC---TTCCEEECCSSC-CSSCC-C-CTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC-C
T ss_pred cCcccCCCc---ccccEEECcCCc-CCcCc-c-ccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc-c
Confidence 776666543 367777777765 45565 3 66777777777776665443211 123444444343333322 1
Q ss_pred ecCchhhhhhhcccc-------ccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEE
Q 038405 660 LGSASALFKINFSWK-------LCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSI 732 (863)
Q Consensus 660 ~~~~~~l~~l~~~~~-------~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L 732 (863)
+..++.++.+..+.+ ..++|+.|++++|.....+. .+++|++|++++|.+.+++.. .++|+.|++
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~--~~~~L~~L~ls~N~l~~l~~~------~~~L~~L~l 304 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENIFSGLSEL------PPNLYYLNA 304 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSEESCC------CTTCCEEEC
T ss_pred cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCc--ccCcCCEEECcCCccCcccCc------CCcCCEEEC
Confidence 222111111111110 12345555555554433221 124555555555555443221 234555555
Q ss_pred ecCCCCCCCcccccC-CCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEe
Q 038405 733 RVCPVIRDLTWIREA-PNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVS 811 (863)
Q Consensus 733 ~~~~~~~~l~~l~~l-~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~ 811 (863)
++|... . +..+ ++|+.|++++|.. ..+|. .+++|+.|+++++ .++.++. .+++|+.|+
T Consensus 305 ~~N~l~-~---i~~~~~~L~~L~Ls~N~l-~~lp~------------~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~ 363 (454)
T 1jl5_A 305 SSNEIR-S---LCDLPPSLEELNVSNNKL-IELPA------------LPPRLERLIASFN-HLAEVPE---LPQNLKQLH 363 (454)
T ss_dssp CSSCCS-E---ECCCCTTCCEEECCSSCC-SCCCC------------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEE
T ss_pred cCCcCC-c---ccCCcCcCCEEECCCCcc-ccccc------------cCCcCCEEECCCC-ccccccc---hhhhccEEE
Confidence 554321 1 1122 3566666665542 22221 2456666666654 3444443 355666666
Q ss_pred eccC
Q 038405 812 VTNC 815 (863)
Q Consensus 812 i~~C 815 (863)
++++
T Consensus 364 L~~N 367 (454)
T 1jl5_A 364 VEYN 367 (454)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6654
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=6.5e-18 Score=179.79 Aligned_cols=241 Identities=19% Similarity=0.213 Sum_probs=183.8
Q ss_pred cEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceeeccCCCcccc---chhhhcccCccEEec
Q 038405 524 QTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLNLSNTSIEEL---PSEIMYLKNLKILLL 599 (863)
Q Consensus 524 r~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~~i~~l---P~~i~~L~~L~~L~l 599 (863)
+.+...++.++.+|..+ .++|++|++++| .+..+|.. ++++++|++|++++|.+..+ |..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 56777888888998753 368999999999 78888875 68999999999999998866 678888999999999
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccc
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCI 679 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L 679 (863)
++|. +..+|.. +..+++|++|++++|.+....... ....+++|
T Consensus 86 s~n~-i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~-----------------------------------~~~~l~~L 128 (306)
T 2z66_A 86 SFNG-VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS-----------------------------------VFLSLRNL 128 (306)
T ss_dssp CSCS-EEEEEEE-EETCTTCCEEECTTSEEESSTTTT-----------------------------------TTTTCTTC
T ss_pred CCCc-cccChhh-cCCCCCCCEEECCCCcccccccch-----------------------------------hhhhccCC
Confidence 9997 7778877 889999999999987654322100 11234578
Q ss_pred cEEEecccCCccccc--ccccCCcceeEeccCcccc-cCCCCCCCCCCCCCCEEEEecCCCCCCC-cccccCCCcceEee
Q 038405 680 KRLTIMHNLDSHSID--LRNMMHLETLNIVECSLER-VDPTFNGWTNFHNLHHLSIRVCPVIRDL-TWIREAPNLQFLSL 755 (863)
Q Consensus 680 ~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L 755 (863)
+.|++++|....... +..+++|++|++++|.+.+ ..+. .+..+++|+.|++++|...... ..+..+++|+.|+|
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh--HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 889999887655443 7889999999999999876 2222 4567899999999999765543 46889999999999
Q ss_pred ccCcchhhhhcccCCccccccCccCcccceecccccccccccccCccCCC-CccEEeeccCC
Q 038405 756 VNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFP-SLQNVSVTNCP 816 (863)
Q Consensus 756 ~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~-~L~~L~i~~C~ 816 (863)
++|... .++. .....+++|+.|+++++.--...+.....+| +|+.|++++++
T Consensus 207 ~~N~l~-~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 207 SHNNFF-SLDT--------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSCCS-BCCS--------GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCccC-ccCh--------hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 999743 3221 2346789999999998743333333444554 78888877654
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=3.6e-18 Score=191.38 Aligned_cols=266 Identities=19% Similarity=0.158 Sum_probs=158.2
Q ss_pred cEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEecCCCC
Q 038405 524 QTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLLDGMR 603 (863)
Q Consensus 524 r~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~ 603 (863)
+.|++++|.+..+|. -.++|++|++++| .+..+|.. +.+|++|++++|.+..+|.. .++|++|++++|.
T Consensus 74 ~~L~l~~~~l~~lp~----~~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 74 HELELNNLGLSSLPE----LPPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ 142 (454)
T ss_dssp SEEECTTSCCSCCCS----CCTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC
T ss_pred CEEEecCCccccCCC----CcCCCCEEEccCC-cCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC
Confidence 555666555555554 1356777777777 55556643 35677777777776666542 2578888888886
Q ss_pred CccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccc-------c
Q 038405 604 HFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKL-------C 676 (863)
Q Consensus 604 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~-------~ 676 (863)
+..+| . ++++++|++|++++|.+..++. ....++.|....|.+..++ .+..++.++.+..+.+. .
T Consensus 143 -l~~lp-~-~~~l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~ 214 (454)
T 1jl5_A 143 -LEKLP-E-LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP 214 (454)
T ss_dssp -CSSCC-C-CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC
T ss_pred -CCCCc-c-cCCCCCCCEEECCCCcCcccCC----CcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc
Confidence 55677 3 7888888888888887665322 1235666666666665554 34444444433333221 2
Q ss_pred ccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeec
Q 038405 677 SCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLV 756 (863)
Q Consensus 677 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 756 (863)
++|+.|++++|.....+.+..+++|++|++++|.+.+++. .+++|+.|++++|.... ++. .+++|+.|+++
T Consensus 215 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~-l~~--~~~~L~~L~ls 285 (454)
T 1jl5_A 215 LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTD-LPE--LPQSLTFLDVS 285 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECC
T ss_pred CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcccc-cCc--ccCcCCEEECc
Confidence 3677888887766654457777888888888887776543 24677888887775433 332 23677777777
Q ss_pred cCcchhhhhccc-CCccccc------cCccC-cccceecccccccccccccCccCCCCccEEeeccCCCCCCCCC
Q 038405 757 NCQALSEIIESA-GSSEVAE------SHNYF-AYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVTNCPNLRELPF 823 (863)
Q Consensus 757 ~~~~l~~i~~~~-~~~~~~~------~~~~~-~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 823 (863)
+|... .++... ....+.. ....+ ++|+.|+++++ +++.++. .+++|+.|++++| +++.+|.
T Consensus 286 ~N~l~-~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N-~l~~lp~ 354 (454)
T 1jl5_A 286 ENIFS-GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA---LPPRLERLIASFN-HLAEVPE 354 (454)
T ss_dssp SSCCS-EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC
T ss_pred CCccC-cccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccc---cCCcCCEEECCCC-ccccccc
Confidence 77532 221100 0000000 01122 46777777764 3444433 2578899998876 5666664
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=8.5e-18 Score=189.27 Aligned_cols=222 Identities=25% Similarity=0.290 Sum_probs=183.3
Q ss_pred ccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceee
Q 038405 500 REDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLN 575 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~ 575 (863)
..++.|.+.+|.+..++... +++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. ++++++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 57899999999999885543 899999999999999999888999999999999999 77777764 88999999999
Q ss_pred ccCCCccccch-hhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccce
Q 038405 576 LSNTSIEELPS-EIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIY 654 (863)
Q Consensus 576 L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~ 654 (863)
|++|.|..+|. .+.++++|++|++++|..+..+|...+.++++|++|++++|.+..+. ......+|+.|....|.+.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCc
Confidence 99999999987 58999999999999988899999888999999999999999876553 2224455556655555554
Q ss_pred eeEEeecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEE
Q 038405 655 EISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSI 732 (863)
Q Consensus 655 ~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L 732 (863)
.+. ......+++|+.|++++|....... +..+++|+.|++++|.++.+++. .+..+++|+.|+|
T Consensus 232 ~~~------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L 297 (452)
T 3zyi_A 232 EIR------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD--LFTPLRYLVELHL 297 (452)
T ss_dssp EEC------------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT--SSTTCTTCCEEEC
T ss_pred ccC------------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH--HhccccCCCEEEc
Confidence 332 1223456789999999998776543 88899999999999999887654 4567899999999
Q ss_pred ecCCCC
Q 038405 733 RVCPVI 738 (863)
Q Consensus 733 ~~~~~~ 738 (863)
++|+..
T Consensus 298 ~~Np~~ 303 (452)
T 3zyi_A 298 HHNPWN 303 (452)
T ss_dssp CSSCEE
T ss_pred cCCCcC
Confidence 999753
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=4.5e-18 Score=178.96 Aligned_cols=203 Identities=24% Similarity=0.344 Sum_probs=166.4
Q ss_pred cccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhccccccee
Q 038405 499 WREDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCL 574 (863)
Q Consensus 499 ~~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L 574 (863)
...++++.+.++.+..++... +++|++|++++|.+..+++..|..+++|++|++++|..+..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 458899999999999988543 899999999999999987777999999999999999537766 7789999999999
Q ss_pred eccCCCcccc-chhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccc
Q 038405 575 NLSNTSIEEL-PSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQI 653 (863)
Q Consensus 575 ~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L 653 (863)
++++|.+..+ |..+.++++|++|++++|. +..+|...++++++|++|++++|.+..+....
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------------- 172 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERA----------------- 172 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTT-----------------
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHH-----------------
Confidence 9999999988 5568999999999999998 67777776899999999999987654322111
Q ss_pred eeeEEeecCchhhhhhhccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEE
Q 038405 654 YEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLS 731 (863)
Q Consensus 654 ~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~ 731 (863)
...+++|+.|++++|......+ +..+++|+.|++++|.+.++++. .+..+++|+.|+
T Consensus 173 -------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~ 231 (285)
T 1ozn_A 173 -------------------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE--ALAPLRALQYLR 231 (285)
T ss_dssp -------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH--HHTTCTTCCEEE
T ss_pred -------------------hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH--HcccCcccCEEe
Confidence 1224578888888887765533 88899999999999998877542 345789999999
Q ss_pred EecCCCCCC
Q 038405 732 IRVCPVIRD 740 (863)
Q Consensus 732 L~~~~~~~~ 740 (863)
+++|+...+
T Consensus 232 l~~N~~~c~ 240 (285)
T 1ozn_A 232 LNDNPWVCD 240 (285)
T ss_dssp CCSSCEECS
T ss_pred ccCCCccCC
Confidence 999976443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=4.4e-19 Score=189.63 Aligned_cols=264 Identities=19% Similarity=0.087 Sum_probs=196.3
Q ss_pred ccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCCccccchhhhcccCccEEecCC
Q 038405 523 LQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLLDG 601 (863)
Q Consensus 523 Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~ 601 (863)
++.+++..+.+...+...+..+++|++|+|++| .+..+ |..++++++|++|++++|.+..+++ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 455566666677777777888899999999999 66655 4689999999999999999998876 99999999999999
Q ss_pred CCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccccE
Q 038405 602 MRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCIKR 681 (863)
Q Consensus 602 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~ 681 (863)
|. +..+| .+++|++|++++|.+....... ...++.|....|.+.. +. ......+++|+.
T Consensus 90 n~-l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~----------~~--~~~~~~l~~L~~ 148 (317)
T 3o53_A 90 NY-VQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITM----------LR--DLDEGCRSRVQY 148 (317)
T ss_dssp SE-EEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCS----------GG--GBCTGGGSSEEE
T ss_pred Cc-ccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCC----------cc--chhhhccCCCCE
Confidence 97 66555 3489999999999876654332 2334444444433322 11 122344678999
Q ss_pred EEecccCCccccc--c-cccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeeccC
Q 038405 682 LTIMHNLDSHSID--L-RNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNC 758 (863)
Q Consensus 682 L~l~~~~~~~~~~--l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 758 (863)
|++++|....... + ..+++|++|++++|.++.++.. ..+++|+.|++++|.....++.+..+++|+.|+|++|
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc----cccccCCEEECCCCcCCcchhhhcccCcccEEECcCC
Confidence 9999998766442 3 4689999999999998887443 2589999999999976555566888999999999999
Q ss_pred cchhhhhcccCCccccccCccCcccceecccccccc-cccccCccCCCCccEEeeccCCCCCCCCC
Q 038405 759 QALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSL-KRICHGTMPFPSLQNVSVTNCPNLRELPF 823 (863)
Q Consensus 759 ~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L-~~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 823 (863)
.. ..+|. ....+++|+.|++++++-. ..++.....++.|+.+.+.+|+.++..+.
T Consensus 225 ~l-~~l~~---------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 225 KL-VLIEK---------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CC-CEECT---------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred cc-cchhh---------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 74 44543 3466889999999986544 23444445678888888888877776544
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1.5e-17 Score=174.88 Aligned_cols=130 Identities=22% Similarity=0.232 Sum_probs=110.7
Q ss_pred ccccceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeecc
Q 038405 498 SWREDFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLS 577 (863)
Q Consensus 498 ~~~~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 577 (863)
....++.+.+.++.++.+|....+++++|++++|.+..++...|..+++|++|+|++| .+..+|.. +.+++|++|+++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECC
T ss_pred ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECC
Confidence 3456778888888888888777889999999999888888777889999999999999 77777764 788999999999
Q ss_pred CCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchh
Q 038405 578 NTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 578 ~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
+|.+..+|..+..+++|++|++++|. +..+|.+.|.++++|++|++++|.+.
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCC
Confidence 99999999888999999999999987 67777666889999999999877543
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=3.6e-17 Score=170.46 Aligned_cols=197 Identities=24% Similarity=0.320 Sum_probs=126.7
Q ss_pred cceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceeeccCC
Q 038405 501 EDFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLNLSNT 579 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~ 579 (863)
..+.+.+.++.+..+|....++++.|++++|.+..++...|..+++|++|++++| .+..+|.. +.++++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC
Confidence 3456777777777777666677788888877777777766777788888888777 66666654 367777888888887
Q ss_pred Cccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEE
Q 038405 580 SIEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISI 658 (863)
Q Consensus 580 ~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~ 658 (863)
.+..+|.. +..+++|++|++++|. +..+|...++++++|++|++++|.+..+...
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------------------- 151 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKG----------------------- 151 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------------------
T ss_pred cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHh-----------------------
Confidence 77777654 5677778888887776 5556655567777777777776543211100
Q ss_pred eecCchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCC
Q 038405 659 TLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVI 738 (863)
Q Consensus 659 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~ 738 (863)
.+..+++|++|++++|.+..+++. .+..+++|+.|++++|...
T Consensus 152 -----------------------------------~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 152 -----------------------------------VFDKLTSLKELRLYNNQLKRVPEG--AFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp -----------------------------------TTTTCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCCS
T ss_pred -----------------------------------HccCCcccceeEecCCcCcEeChh--HhccCCCcCEEECCCCcCC
Confidence 034455666666666665555432 2345566666666666433
Q ss_pred CCCc-ccccCCCcceEeeccCc
Q 038405 739 RDLT-WIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 739 ~~l~-~l~~l~~L~~L~L~~~~ 759 (863)
..++ .+..+++|+.|+|++|+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCHHHhccccCCCEEEecCCC
Confidence 2222 25556666666666654
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=8.5e-17 Score=185.76 Aligned_cols=235 Identities=22% Similarity=0.164 Sum_probs=179.5
Q ss_pred ccceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCC
Q 038405 500 REDFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNT 579 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 579 (863)
.+++.|.+.+|.++.+|. .+++|++|++++|.+..+|. .+++|++|++++| .+..+|. .+.+|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCC
Confidence 588999999999998887 58999999999999998887 6799999999999 8888887 6789999999999
Q ss_pred CccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEe
Q 038405 580 SIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISIT 659 (863)
Q Consensus 580 ~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~ 659 (863)
.++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.+..++ ....+|+.|....|.+..++.
T Consensus 132 ~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~- 198 (622)
T 3g06_A 132 QLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT- 198 (622)
T ss_dssp CCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-
T ss_pred CCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC-
Confidence 99999975 4899999999997 667775 3568899999998876553 133455555555554443221
Q ss_pred ecCchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCC
Q 038405 660 LGSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIR 739 (863)
Q Consensus 660 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 739 (863)
..++|+.|++++|....... .+++|+.|++++|.++.++. .+++|+.|++++|. ++
T Consensus 199 ---------------~~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp~------~l~~L~~L~Ls~N~-L~ 254 (622)
T 3g06_A 199 ---------------LPSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLPV------LPSELKELMVSGNR-LT 254 (622)
T ss_dssp ---------------CCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSC-CS
T ss_pred ---------------ccchhhEEECcCCcccccCC--CCCCCCEEEccCCccCcCCC------CCCcCcEEECCCCC-CC
Confidence 23578888888887654432 34788888888888877652 46788888888884 44
Q ss_pred CCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccc
Q 038405 740 DLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLP 792 (863)
Q Consensus 740 ~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 792 (863)
.+|. .+++|+.|+|++|.. ..+|. ....+++|+.|+|++++
T Consensus 255 ~lp~--~~~~L~~L~Ls~N~L-~~lp~---------~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 255 SLPM--LPSGLLSLSVYRNQL-TRLPE---------SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCCC--CCTTCCEEECCSSCC-CSCCG---------GGGGSCTTCEEECCSCC
T ss_pred cCCc--ccccCcEEeCCCCCC-CcCCH---------HHhhccccCEEEecCCC
Confidence 5554 678888888888863 45543 34568888888888764
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=2e-17 Score=172.56 Aligned_cols=198 Identities=18% Similarity=0.261 Sum_probs=127.0
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchh-hhcccCccEEe
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSE-IMYLKNLKILL 598 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~ 598 (863)
+++|+.|.+.+|.+..++. +..+++|++|++++| .+..++ .++++++|++|++++|.+..+|.. ++++++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 6677777777777766654 667778888888877 566654 577777888888888877777655 57777888888
Q ss_pred cCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhcccccccc
Q 038405 599 LDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSC 678 (863)
Q Consensus 599 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~ 678 (863)
+++|. +..+|...++++++|++|++++|.+..+.+.. ...+++
T Consensus 116 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------------------~~~l~~ 158 (272)
T 3rfs_A 116 LVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV------------------------------------FDKLTN 158 (272)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT------------------------------------TTTCTT
T ss_pred CCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHH------------------------------------hccCcc
Confidence 87776 55666655677777888877766543221100 012335
Q ss_pred ccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeec
Q 038405 679 IKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLV 756 (863)
Q Consensus 679 L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 756 (863)
|+.|++++|......+ +..+++|++|++++|.+.++++. .+..+++|+.|++++|+. .+.+|+|+.|.++
T Consensus 159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~~------~~~~~~l~~l~~~ 230 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG--VFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEW 230 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCB------CCCTTTTHHHHHH
T ss_pred CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH--HHhCCcCCCEEEccCCCc------cccCcHHHHHHHH
Confidence 5556666655443333 56667777777777776665442 344667777777777742 2446667777766
Q ss_pred cCcchhhhhc
Q 038405 757 NCQALSEIIE 766 (863)
Q Consensus 757 ~~~~l~~i~~ 766 (863)
.|.....+|.
T Consensus 231 ~n~~~g~ip~ 240 (272)
T 3rfs_A 231 INKHSGVVRN 240 (272)
T ss_dssp HHHTGGGBBC
T ss_pred HHhCCCcccC
Confidence 6665555443
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=7.6e-17 Score=171.25 Aligned_cols=190 Identities=20% Similarity=0.254 Sum_probs=128.7
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEec
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
+++|++|.+.+|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++++|.+..+| .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 5667777777776666653 667777777777777 6666666 777777777777777777765 4777777777777
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccc
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCI 679 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L 679 (863)
++|. +..+|. +..+++|++|++++|.+..+.. ...+++|
T Consensus 115 ~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--------------------------------------l~~l~~L 153 (308)
T 1h6u_A 115 TSTQ-ITDVTP--LAGLSNLQVLYLDLNQITNISP--------------------------------------LAGLTNL 153 (308)
T ss_dssp TTSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG--------------------------------------GGGCTTC
T ss_pred CCCC-CCCchh--hcCCCCCCEEECCCCccCcCcc--------------------------------------ccCCCCc
Confidence 7776 555553 6777777777777654321100 1123456
Q ss_pred cEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeeccCc
Q 038405 680 KRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 680 ~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 759 (863)
+.|++++|.......+..+++|+.|++++|.+.++++ +..+++|+.|++++|.. ..++.+..+++|+.|++++|.
T Consensus 154 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEEEEE
T ss_pred cEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh----hcCCCCCCEEEccCCcc-CccccccCCCCCCEEEccCCe
Confidence 6677777665554456777788888888887766643 34677888888888754 444457778888888888776
Q ss_pred c
Q 038405 760 A 760 (863)
Q Consensus 760 ~ 760 (863)
.
T Consensus 229 i 229 (308)
T 1h6u_A 229 I 229 (308)
T ss_dssp E
T ss_pred e
Confidence 3
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=1.2e-16 Score=167.16 Aligned_cols=216 Identities=17% Similarity=0.151 Sum_probs=156.1
Q ss_pred EEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceeeccCCCccc
Q 038405 505 LSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLNLSNTSIEE 583 (863)
Q Consensus 505 l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~ 583 (863)
+...+..+..+|....++|++|++++|.+..++...|..+++|++|++++| .+..+|. .++++++|++|++++|.+..
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCc
Confidence 344455566677766778999999999888888777888999999999998 6666654 68889999999999998888
Q ss_pred cc-hhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecC
Q 038405 584 LP-SEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGS 662 (863)
Q Consensus 584 lP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~ 662 (863)
+| ..+.++++|++|++++|. +..++...++++++|++|++++|.+.....
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l---------------------------- 141 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKL---------------------------- 141 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCC----------------------------
T ss_pred cChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecC----------------------------
Confidence 76 458889999999999887 555655448889999999998775432110
Q ss_pred chhhhhhhccccccccccEEEecccCCcccc--cccccCCcc----eeEeccCcccccCCCCCCCCCCCCCCEEEEecCC
Q 038405 663 ASALFKINFSWKLCSCIKRLTIMHNLDSHSI--DLRNMMHLE----TLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCP 736 (863)
Q Consensus 663 ~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~----~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 736 (863)
......+++|+.|++++|...... .+..+++|+ +|++++|.+..+++.. ....+|+.|++++|.
T Consensus 142 -------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~---~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 142 -------PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA---FKEIRLKELALDTNQ 211 (276)
T ss_dssp -------CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS---SCSCCEEEEECCSSC
T ss_pred -------chhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc---cCCCcccEEECCCCc
Confidence 001123456778888877765543 244555555 7888888888775532 234579999999886
Q ss_pred CCCCCc-ccccCCCcceEeeccCcc
Q 038405 737 VIRDLT-WIREAPNLQFLSLVNCQA 760 (863)
Q Consensus 737 ~~~~l~-~l~~l~~L~~L~L~~~~~ 760 (863)
....++ .+..+++|+.|+|++|+.
T Consensus 212 l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 212 LKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred eeecCHhHhcccccccEEEccCCcc
Confidence 544333 357889999999988764
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=7.6e-18 Score=179.58 Aligned_cols=243 Identities=14% Similarity=0.060 Sum_probs=141.7
Q ss_pred cceEEEeccCCccccCCCCCCCccEEEeecccccc--cchhhh------hcCCCccEEeccCCcCccccchhh--hcccc
Q 038405 501 EDFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEI--FPHRFF------ESMGALKVLDLSYNLDLTQLPAEM--GALIN 570 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~--l~~~~~------~~l~~L~~L~Ls~~~~i~~lp~~i--~~L~~ 570 (863)
.++.+.+.+|.+ .+|......|+.|++++|.+.. +|.... ..+++|++|+|++|.....+|..+ +.+++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 122 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCC
T ss_pred CceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCC
Confidence 455566666666 5554433448888888886643 443321 157888888888883333677766 78888
Q ss_pred cceeeccCCCccccchhhhcc-----cCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchh
Q 038405 571 LRCLNLSNTSIEELPSEIMYL-----KNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDE 645 (863)
Q Consensus 571 L~~L~L~~~~i~~lP~~i~~L-----~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 645 (863)
|++|++++|.+..+|..++.+ ++|++|++++|. +..+|...++++++|++|++++|.+.+... ....
T Consensus 123 L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~ 194 (312)
T 1wwl_A 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERG-------LISA 194 (312)
T ss_dssp CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHH-------HHHH
T ss_pred ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchH-------HHHH
Confidence 888888888888888777777 888888888887 556664458888888888888775322100 0000
Q ss_pred hhhhcccceeeEEeecCchhhhhhhccccccccccEEEecccCCccccc-----ccccCCcceeEeccCcccccCCCCCC
Q 038405 646 LECLGNQIYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID-----LRNMMHLETLNIVECSLERVDPTFNG 720 (863)
Q Consensus 646 L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-----l~~~~~L~~L~l~~~~l~~~~~~~~~ 720 (863)
+ ....+++|+.|++++|....... +..+++|++|++++|.+.+..+.. .
T Consensus 195 ~-------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~ 248 (312)
T 1wwl_A 195 L-------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-S 248 (312)
T ss_dssp S-------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-C
T ss_pred H-------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-h
Confidence 0 00123455566666555442211 234556666666666655543211 2
Q ss_pred CCCCCCCCEEEEecCCCCCCCcccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccccc
Q 038405 721 WTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSL 791 (863)
Q Consensus 721 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~ 791 (863)
+..+++|+.|++++|.....+..+. ++|++|+|++|.. ..+| ....+++|+.|++++.
T Consensus 249 ~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l-~~~p----------~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL-DRNP----------SPDELPQVGNLSLKGN 306 (312)
T ss_dssp CCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCC-CSCC----------CTTTSCEEEEEECTTC
T ss_pred hhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCC-CCCh----------hHhhCCCCCEEeccCC
Confidence 2345666666666664432222232 5666666666642 2221 1344566666666553
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=2.2e-16 Score=161.23 Aligned_cols=112 Identities=20% Similarity=0.307 Sum_probs=73.7
Q ss_pred ccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceeeccC-CCccccch-hh
Q 038405 512 IEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLNLSN-TSIEELPS-EI 588 (863)
Q Consensus 512 ~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~-~~i~~lP~-~i 588 (863)
+..+|. ..+++++|++++|.++.++...|..+++|++|++++|..+..+|. .++++++|++|++++ |.++.+|. .+
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 555665 555777777777777777766677777777777777732655554 566777777777776 67776664 36
Q ss_pred hcccCccEEecCCCCCccccchhhhcCCCCCc---eeeccCc
Q 038405 589 MYLKNLKILLLDGMRHFHLIPARVFSSLLSLK---VFSLFST 627 (863)
Q Consensus 589 ~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~---~L~l~~~ 627 (863)
.++++|++|++++|. +..+|. ++.+++|+ +|++++|
T Consensus 102 ~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 102 KELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp ECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred CCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCC
Confidence 667777777777765 455654 55566665 6666554
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=4e-16 Score=162.50 Aligned_cols=197 Identities=23% Similarity=0.318 Sum_probs=142.6
Q ss_pred CccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceeeccCCCccccchh-hhcccCccEEec
Q 038405 522 HLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLNLSNTSIEELPSE-IMYLKNLKILLL 599 (863)
Q Consensus 522 ~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l 599 (863)
+.++++++++.++.+|..+ .+.|++|++++| .+..+|. .++++++|++|++++|.+..+|.. +.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4677888888777777642 257888888888 5666654 677888888888888888888766 467888888888
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccc
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCI 679 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L 679 (863)
++|. +..+|...+.++++|++|++++|.+..+.
T Consensus 93 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------------------------------- 125 (270)
T 2o6q_A 93 TDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLP---------------------------------------------- 125 (270)
T ss_dssp CSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCC----------------------------------------------
T ss_pred CCCc-CCcCCHhHcccccCCCEEECCCCccCeeC----------------------------------------------
Confidence 8876 66666666777888888877765432110
Q ss_pred cEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCc-ccccCCCcceEeeccC
Q 038405 680 KRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLT-WIREAPNLQFLSLVNC 758 (863)
Q Consensus 680 ~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 758 (863)
...+..+++|++|++++|.+..++.. .+..+++|+.|++++|......+ .+..+++|++|+|++|
T Consensus 126 ------------~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 126 ------------PRVFDSLTKLTYLSLGYNELQSLPKG--VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp ------------TTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ------------HHHhCcCcCCCEEECCCCcCCccCHh--HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 00156678999999999998877553 35678999999999996544443 4788999999999998
Q ss_pred cchhhhhcccCCccccccCccCcccceecccccc
Q 038405 759 QALSEIIESAGSSEVAESHNYFAYLMVIDLDSLP 792 (863)
Q Consensus 759 ~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 792 (863)
. +..++. .....+++|+.|.|.+.+
T Consensus 192 ~-l~~~~~--------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 192 Q-LKRVPE--------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp C-CSCCCT--------TTTTTCTTCCEEECCSSC
T ss_pred c-CCcCCH--------HHhccccCCCEEEecCCC
Confidence 6 344432 234567888888887654
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1.7e-17 Score=187.75 Aligned_cols=233 Identities=15% Similarity=0.140 Sum_probs=181.7
Q ss_pred cccceEEEeccCCccccCCC-C--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceee
Q 038405 499 WREDFRLSLWGSSIEYLPET-P--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLN 575 (863)
Q Consensus 499 ~~~~~~l~l~~~~~~~l~~~-~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 575 (863)
.++++.|++.+|.+..++.. . +++|++|++++|.+...++ +..+++|++|+|++| .+..+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 34789999999999887643 2 8999999999998887776 889999999999999 7777764 38999999
Q ss_pred ccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCC-ccccchhhhhhcccce
Q 038405 576 LSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPN-QTTILDELECLGNQIY 654 (863)
Q Consensus 576 L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~l~n~L~ 654 (863)
+++|.|..+|.. .+++|++|++++|. +..+++..++++++|++|++++|.+....+.... ....|+.|....|.+.
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999999988764 57899999999998 5555444488999999999999987665443322 3455666666665555
Q ss_pred eeEEeecCchhhhhhhccccccccccEEEecccCCccccc-ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEe
Q 038405 655 EISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID-LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIR 733 (863)
Q Consensus 655 ~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~ 733 (863)
.++. ...+++|+.|++++|.....++ +..+++|+.|++++|.+.+++. .+..+++|+.|+++
T Consensus 183 ~~~~--------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~---~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 183 DVKG--------------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK---ALRFSQNLEHFDLR 245 (487)
T ss_dssp EEEC--------------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT---TCCCCTTCCEEECT
T ss_pred cccc--------------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccch---hhccCCCCCEEEcC
Confidence 4421 1236789999999998876654 8889999999999999988765 34578999999999
Q ss_pred cCCCC-CC-CcccccCCCcceEeeccC
Q 038405 734 VCPVI-RD-LTWIREAPNLQFLSLVNC 758 (863)
Q Consensus 734 ~~~~~-~~-l~~l~~l~~L~~L~L~~~ 758 (863)
+|+.. .. +.++..++.|+.|.++.+
T Consensus 246 ~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp TCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCcCcchHHHHHhCCCCcEEecccc
Confidence 99765 22 245778888888877643
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=6.3e-16 Score=164.10 Aligned_cols=190 Identities=19% Similarity=0.263 Sum_probs=160.5
Q ss_pred ccccceEEEeccCCccccCCCC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeec
Q 038405 498 SWREDFRLSLWGSSIEYLPETP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNL 576 (863)
Q Consensus 498 ~~~~~~~l~l~~~~~~~l~~~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 576 (863)
..+.++.+++.++.+..++... +++|++|++++|.+..++. +..+++|++|++++| .+..+| .++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEEC
Confidence 4568899999999999888655 9999999999999999887 889999999999999 788876 5999999999999
Q ss_pred cCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceee
Q 038405 577 SNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEI 656 (863)
Q Consensus 577 ~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l 656 (863)
++|.+..+|. +..+++|++|++++|. +..+|. ++.+++|++|++++|.+..+..
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---------------------- 168 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSDLTP---------------------- 168 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGG----------------------
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCCChh----------------------
Confidence 9999999986 9999999999999997 666765 8899999999999875432110
Q ss_pred EEeecCchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCC
Q 038405 657 SITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCP 736 (863)
Q Consensus 657 ~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~ 736 (863)
...+++|+.|++++|.......+..+++|++|++++|.+.++++ +..+++|+.|++++|+
T Consensus 169 ----------------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 ----------------LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQT 228 (308)
T ss_dssp ----------------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEE
T ss_pred ----------------hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCe
Confidence 11345788899998887766668889999999999999887753 3478999999999996
Q ss_pred C
Q 038405 737 V 737 (863)
Q Consensus 737 ~ 737 (863)
.
T Consensus 229 i 229 (308)
T 1h6u_A 229 I 229 (308)
T ss_dssp E
T ss_pred e
Confidence 4
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=2.5e-16 Score=170.75 Aligned_cols=238 Identities=16% Similarity=0.106 Sum_probs=173.2
Q ss_pred eEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccce-eeccCCC
Q 038405 503 FRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRC-LNLSNTS 580 (863)
Q Consensus 503 ~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~-L~L~~~~ 580 (863)
+.+...++.++++|....+++++|++++|.++.+|.+.|.++++|++|+|++|...+.+|. .|.++++|++ +.+++|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 3456677788888887788999999999999999988899999999999999944566664 4678888775 5566779
Q ss_pred ccccch-hhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccC-cchhhhccCCCCcc-ccchhhhhhcccceeeE
Q 038405 581 IEELPS-EIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFS-TELIELHRMPPNQT-TILDELECLGNQIYEIS 657 (863)
Q Consensus 581 i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~-~~~~~~~~~~~~~~-~~l~~L~~l~n~L~~l~ 657 (863)
+..+|. .+..+++|++|++++|. +..+|...+....++..|++.+ +.+..+....+... ..+..|....|.++.++
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred ccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 998854 57899999999999987 6667765466677788888865 33433333322222 22344444444444333
Q ss_pred EeecCchhhhhhhccccccccccEEEecccCCccccc---ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEec
Q 038405 658 ITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSID---LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRV 734 (863)
Q Consensus 658 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~---l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~ 734 (863)
.. .....+++.|.+.++......+ |..+++|+.|++++|.++.++.. .+.+|+.|.+.+
T Consensus 171 ~~-------------~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~-----~~~~L~~L~~l~ 232 (350)
T 4ay9_X 171 NS-------------AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY-----GLENLKKLRARS 232 (350)
T ss_dssp TT-------------SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS-----SCTTCCEEECTT
T ss_pred hh-------------hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh-----hhccchHhhhcc
Confidence 21 1123468888887654443332 78899999999999998888654 478899999989
Q ss_pred CCCCCCCcccccCCCcceEeeccCc
Q 038405 735 CPVIRDLTWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 735 ~~~~~~l~~l~~l~~L~~L~L~~~~ 759 (863)
+..++.+|.+..+++|+.+++.++.
T Consensus 233 ~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 233 TYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred CCCcCcCCCchhCcChhhCcCCCCc
Confidence 8888888889999999999987543
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=7.3e-16 Score=161.19 Aligned_cols=201 Identities=21% Similarity=0.205 Sum_probs=158.0
Q ss_pred ccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhcccccceee
Q 038405 500 REDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLN 575 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~ 575 (863)
..++.+.+.+|.+..++... +++|++|++++|.+..++...|..+++|++|++++| .+..+| ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 46899999999999887633 899999999999999999888999999999999999 666555 6789999999999
Q ss_pred ccCCCccccch-hhhcccCccEEecCCCCCccc--cchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhccc
Q 038405 576 LSNTSIEELPS-EIMYLKNLKILLLDGMRHFHL--IPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQ 652 (863)
Q Consensus 576 L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~ 652 (863)
+++|.+..++. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+..+.. ..+..+..+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L--- 175 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC------TDLRVLHQM--- 175 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEECG------GGGHHHHTC---
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcCCH------HHhhhhhhc---
Confidence 99999998876 59999999999999998 444 5665 8999999999999887543321 111112111
Q ss_pred ceeeEEeecCchhhhhhhcccccccccc-EEEecccCCccccc-ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEE
Q 038405 653 IYEISITLGSASALFKINFSWKLCSCIK-RLTIMHNLDSHSID-LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHL 730 (863)
Q Consensus 653 L~~l~~~~~~~~~l~~l~~~~~~~~~L~-~L~l~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L 730 (863)
+.+. .|++++|....... .....+|++|++++|.++.+++. .+..+++|+.|
T Consensus 176 ------------------------~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L 229 (276)
T 2z62_A 176 ------------------------PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG--IFDRLTSLQKI 229 (276)
T ss_dssp ------------------------TTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTT--TTTTCCSCCEE
T ss_pred ------------------------cccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHh--HhcccccccEE
Confidence 1222 67777777655443 33345899999999999887654 45679999999
Q ss_pred EEecCCCC
Q 038405 731 SIRVCPVI 738 (863)
Q Consensus 731 ~L~~~~~~ 738 (863)
++++|+..
T Consensus 230 ~l~~N~~~ 237 (276)
T 2z62_A 230 WLHTNPWD 237 (276)
T ss_dssp ECCSSCBC
T ss_pred EccCCccc
Confidence 99999643
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=4.2e-16 Score=159.17 Aligned_cols=129 Identities=18% Similarity=0.330 Sum_probs=114.0
Q ss_pred ccceEEEeccCCccccCCCC---CCCccEEEeeccc-ccccchhhhhcCCCccEEeccC-CcCccccc-hhhhcccccce
Q 038405 500 REDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTV-LEIFPHRFFESMGALKVLDLSY-NLDLTQLP-AEMGALINLRC 573 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~-l~~l~~~~~~~l~~L~~L~Ls~-~~~i~~lp-~~i~~L~~L~~ 573 (863)
..++.+.+.+|.++.++... +++|++|++++|. +..+++..|..+++|++|++++ | .+..+| ..+.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCE
Confidence 47899999999999988743 8999999999996 9999988899999999999998 6 777776 46889999999
Q ss_pred eeccCCCccccchhhhcccCcc---EEecCCCCCccccchhhhcCCCCCc-eeeccCcchh
Q 038405 574 LNLSNTSIEELPSEIMYLKNLK---ILLLDGMRHFHLIPARVFSSLLSLK-VFSLFSTELI 630 (863)
Q Consensus 574 L~L~~~~i~~lP~~i~~L~~L~---~L~l~~~~~l~~lp~~~i~~L~~L~-~L~l~~~~~~ 630 (863)
|++++|.++.+|. +..+++|+ +|++++|..+..+|...+.++++|+ +|++++|.+.
T Consensus 110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 9999999999997 88888888 9999999448888887799999999 9999876543
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=5.2e-16 Score=161.77 Aligned_cols=210 Identities=15% Similarity=0.175 Sum_probs=157.4
Q ss_pred CccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEecCC
Q 038405 522 HLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLLDG 601 (863)
Q Consensus 522 ~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~ 601 (863)
.+..+.+..+.+..... ...+++|+.|+++++ .+..++. ++.+++|++|++++|.+..+| .++++++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~-~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTS-CCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccccc--cccccceeeeeeCCC-Ccccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 33444444444444433 567899999999999 7777764 899999999999999999875 789999999999999
Q ss_pred CCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccccE
Q 038405 602 MRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCIKR 681 (863)
Q Consensus 602 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~ 681 (863)
|. +..+|...++++++|++|++++|.+..+.+.. ...+++|+.
T Consensus 95 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------------------~~~l~~L~~ 137 (272)
T 3rfs_A 95 NQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGV------------------------------------FDKLTNLTY 137 (272)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT------------------------------------TTTCTTCCE
T ss_pred Cc-cCccChhHhcCCcCCCEEECCCCcCCccCHHH------------------------------------hccCCCCCE
Confidence 97 67777776899999999999987654322111 123457888
Q ss_pred EEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCc-ccccCCCcceEeeccC
Q 038405 682 LTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLT-WIREAPNLQFLSLVNC 758 (863)
Q Consensus 682 L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 758 (863)
|++++|......+ +..+++|++|++++|.++++++. .+..+++|+.|++++|.....++ .+..+++|+.|++++|
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG--VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH--HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 8888887665544 67889999999999998877553 35578999999999997655443 3688999999999988
Q ss_pred cchhhhhcccCCccccccCccCcccceeccccc
Q 038405 759 QALSEIIESAGSSEVAESHNYFAYLMVIDLDSL 791 (863)
Q Consensus 759 ~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~ 791 (863)
... ..+|+|+.+.+...
T Consensus 216 ~~~----------------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 216 PWD----------------CTCPGIRYLSEWIN 232 (272)
T ss_dssp CBC----------------CCTTTTHHHHHHHH
T ss_pred Ccc----------------ccCcHHHHHHHHHH
Confidence 642 23566666666543
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=9.1e-17 Score=171.20 Aligned_cols=239 Identities=18% Similarity=0.175 Sum_probs=172.3
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcc--ccchhhh-------cccccceeeccCCCcc-ccchhh-
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLT--QLPAEMG-------ALINLRCLNLSNTSIE-ELPSEI- 588 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~--~lp~~i~-------~L~~L~~L~L~~~~i~-~lP~~i- 588 (863)
.++|+.|.+++|.+ .+|..+... |++|+|++| .+. .+|..+. ++++|++|++++|.+. .+|..+
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc-ccHHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 45677888888877 777764433 888888888 453 4666665 7888999999999887 678776
Q ss_pred -hcccCccEEecCCCCCccccchhhhcCC-----CCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecC
Q 038405 589 -MYLKNLKILLLDGMRHFHLIPARVFSSL-----LSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGS 662 (863)
Q Consensus 589 -~~L~~L~~L~l~~~~~l~~lp~~~i~~L-----~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~ 662 (863)
+.+++|++|++++|. +..+|.. ++.+ ++|++|++++|.+....+..
T Consensus 117 ~~~l~~L~~L~Ls~N~-l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-------------------------- 168 (312)
T 1wwl_A 117 EATGPDLNILNLRNVS-WATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQ-------------------------- 168 (312)
T ss_dssp SCCSCCCSEEEEESCB-CSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTT--------------------------
T ss_pred HhcCCCccEEEccCCC-CcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHH--------------------------
Confidence 888999999999887 5555654 6666 88899988887654332111
Q ss_pred chhhhhhhccccccccccEEEecccCCcccc----c--ccccCCcceeEeccCcccccCCCC-CCCCCCCCCCEEEEecC
Q 038405 663 ASALFKINFSWKLCSCIKRLTIMHNLDSHSI----D--LRNMMHLETLNIVECSLERVDPTF-NGWTNFHNLHHLSIRVC 735 (863)
Q Consensus 663 ~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~----~--l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~l~~L~~L~L~~~ 735 (863)
...+++|+.|++++|...... . +..+++|++|++++|.+..++... ..+..+++|+.|++++|
T Consensus 169 ----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 169 ----------VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp ----------CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred ----------hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 123457889999998754431 1 388999999999999987442110 01235689999999999
Q ss_pred CCCCCC--cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEeec
Q 038405 736 PVIRDL--TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVT 813 (863)
Q Consensus 736 ~~~~~l--~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~ 813 (863)
...... +.+..+++|++|+|++|.. ..+|. .. +++|+.|+++++ +++.++. ...+++|+.|+++
T Consensus 239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~---------~~--~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 239 SLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPK---------GL--PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLK 304 (312)
T ss_dssp CCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCS---------SC--CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECT
T ss_pred cCCcccchhhhhhcCCCCEEECCCCcc-Chhhh---------hc--cCCceEEECCCC-CCCCChh-HhhCCCCCEEecc
Confidence 765544 4566789999999999984 45543 11 289999999985 6777754 5667888888888
Q ss_pred cC
Q 038405 814 NC 815 (863)
Q Consensus 814 ~C 815 (863)
+.
T Consensus 305 ~N 306 (312)
T 1wwl_A 305 GN 306 (312)
T ss_dssp TC
T ss_pred CC
Confidence 75
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=1.7e-15 Score=159.22 Aligned_cols=196 Identities=18% Similarity=0.107 Sum_probs=158.8
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCCccccchhhhcccCccEEe
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILL 598 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~ 598 (863)
+++++.+++.++.++.+|..+ .+.|++|+|++| .+..+ |..+.++++|++|++++|.|+.+|.. +.+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL---PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC---CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 678999999999999999764 368999999999 56555 56799999999999999999999875 8899999999
Q ss_pred cCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhcccccccc
Q 038405 599 LDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSC 678 (863)
Q Consensus 599 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~ 678 (863)
+++|. +..+|.. +.++++|++|++++|.+..+.+.. ...+++
T Consensus 84 Ls~N~-l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~------------------------------------~~~l~~ 125 (290)
T 1p9a_G 84 LSHNQ-LQSLPLL-GQTLPALTVLDVSFNRLTSLPLGA------------------------------------LRGLGE 125 (290)
T ss_dssp CCSSC-CSSCCCC-TTTCTTCCEEECCSSCCCCCCSST------------------------------------TTTCTT
T ss_pred CCCCc-CCcCchh-hccCCCCCEEECCCCcCcccCHHH------------------------------------HcCCCC
Confidence 99997 7788876 789999999999987654332111 123457
Q ss_pred ccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeec
Q 038405 679 IKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLV 756 (863)
Q Consensus 679 L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 756 (863)
|+.|++++|....... +..+++|+.|++++|.++.++.. .+..+++|+.|++++|.....+..+..+++|+.|+|+
T Consensus 126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG--LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH--HhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 8888888887765554 77889999999999998887654 4567899999999999765555667778899999999
Q ss_pred cCcc
Q 038405 757 NCQA 760 (863)
Q Consensus 757 ~~~~ 760 (863)
+|+.
T Consensus 204 ~Np~ 207 (290)
T 1p9a_G 204 GNPW 207 (290)
T ss_dssp SCCB
T ss_pred CCCc
Confidence 8864
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=1.8e-15 Score=163.88 Aligned_cols=234 Identities=14% Similarity=0.184 Sum_probs=145.6
Q ss_pred cEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceeeccCCCcc-ccchh-hhcccCccEEecC
Q 038405 524 QTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLNLSNTSIE-ELPSE-IMYLKNLKILLLD 600 (863)
Q Consensus 524 r~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~-~lP~~-i~~L~~L~~L~l~ 600 (863)
++++.+++.++.+|..+ .+++++|+|++| .++.+|. .|.++++|++|+|++|.+. .+|.. +.++++|+.+...
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67788888899999864 468999999999 8899986 5899999999999999875 56654 7889998876555
Q ss_pred CCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhcccccccccc
Q 038405 601 GMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCIK 680 (863)
Q Consensus 601 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~ 680 (863)
++..+..+|++.+..+++|++|++++|.+..+........ ..+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------------~~l~ 131 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS------------------------------------LQKV 131 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB------------------------------------SSCE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhccc------------------------------------chhh
Confidence 4445888887779999999999999987654432221111 1122
Q ss_pred EEEecccCCccccc---cccc-CCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCc--ccccCCCcceEe
Q 038405 681 RLTIMHNLDSHSID---LRNM-MHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLT--WIREAPNLQFLS 754 (863)
Q Consensus 681 ~L~l~~~~~~~~~~---l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~ 754 (863)
.|++.++......+ +..+ ..++.|++++|.++.++.. .....+|+.|.+.++..++.++ .+..+++|+.|+
T Consensus 132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~---~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS---AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT---SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred hhhhccccccccccccchhhcchhhhhhccccccccCCChh---hccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 23332222111111 2222 2455666666666555432 1133456666666554555543 245666666666
Q ss_pred eccCcchhhhhcccCCccccccCccCcccceecccccccccccccCccCCCCccEEeec
Q 038405 755 LVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTMPFPSLQNVSVT 813 (863)
Q Consensus 755 L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~ 813 (863)
|++|. ++.+|. ..|.+|+.|.+.++.+++.++. ...+++|+.+.+.
T Consensus 209 Ls~N~-l~~lp~-----------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 209 ISRTR-IHSLPS-----------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp CTTSC-CCCCCS-----------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred cCCCC-cCccCh-----------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 66664 333332 2355555555555556665552 3345566665554
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=3.5e-15 Score=153.48 Aligned_cols=125 Identities=26% Similarity=0.383 Sum_probs=83.5
Q ss_pred ceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhcccccceeeccCCC
Q 038405 502 DFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLNLSNTS 580 (863)
Q Consensus 502 ~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~ 580 (863)
.+.+.+.++.+..+|....++++.|++++|.+..+++..|..+++|++|+|++| .+..++ ..+.++++|++|++++|.
T Consensus 16 ~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc
Confidence 445666677777777666667777777777777776666777777777777777 444443 346677777777777777
Q ss_pred ccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcc
Q 038405 581 IEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTE 628 (863)
Q Consensus 581 i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 628 (863)
+..+|.. +..+++|++|++++|. +..+|...+.++++|++|++++|.
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc
Confidence 7766643 5667777777777765 556665555666677777666543
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=2.3e-17 Score=186.65 Aligned_cols=135 Identities=15% Similarity=0.091 Sum_probs=79.8
Q ss_pred cccccEEEecccCCccc-----c-cccccCCcceeEeccCcccccCCCC--C-CCCCCCCCCEEEEecCCCCCC-----C
Q 038405 676 CSCIKRLTIMHNLDSHS-----I-DLRNMMHLETLNIVECSLERVDPTF--N-GWTNFHNLHHLSIRVCPVIRD-----L 741 (863)
Q Consensus 676 ~~~L~~L~l~~~~~~~~-----~-~l~~~~~L~~L~l~~~~l~~~~~~~--~-~~~~l~~L~~L~L~~~~~~~~-----l 741 (863)
+++|+.|++++|..... . .+..+++|++|++++|.+.+..... . .....++|+.|++++|..... .
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 56788888887765542 1 1556778888888888765321100 0 011235788888888864332 1
Q ss_pred cccccCCCcceEeeccCcchhhhhcccCCccccccC-ccCcccceeccccccccc-----ccccCccCCCCccEEeeccC
Q 038405 742 TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESH-NYFAYLMVIDLDSLPSLK-----RICHGTMPFPSLQNVSVTNC 815 (863)
Q Consensus 742 ~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~L~-----~l~~~~~~~~~L~~L~i~~C 815 (863)
..+..+++|++|+|++|......+... .... ...++|+.|+++++ .++ .++.....+++|+.|++++|
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l-----~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVREL-----CQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHH-----HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHhhCCCccEEEccCCccccccHHHH-----HHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 345677888888888886432211100 0011 12578888888887 344 34444445788888888876
Q ss_pred C
Q 038405 816 P 816 (863)
Q Consensus 816 ~ 816 (863)
+
T Consensus 409 ~ 409 (461)
T 1z7x_W 409 C 409 (461)
T ss_dssp S
T ss_pred C
Confidence 3
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=9.4e-15 Score=153.61 Aligned_cols=168 Identities=22% Similarity=0.274 Sum_probs=91.3
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEec
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
+++|+.|++++|.+..++. +..+++|++|++++| .+..+|. ++++++|++|++++|.+..+|. +..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 4455555555555554433 445555555555555 4444444 5555555555555555555443 555555555555
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccc
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCI 679 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L 679 (863)
++|. +..++. +..+++|++|++++
T Consensus 120 ~~n~-i~~~~~--l~~l~~L~~L~l~~----------------------------------------------------- 143 (291)
T 1h6t_A 120 EHNG-ISDING--LVHLPQLESLYLGN----------------------------------------------------- 143 (291)
T ss_dssp TTSC-CCCCGG--GGGCTTCCEEECCS-----------------------------------------------------
T ss_pred CCCc-CCCChh--hcCCCCCCEEEccC-----------------------------------------------------
Confidence 5554 333321 44555555555544
Q ss_pred cEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeeccCc
Q 038405 680 KRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 680 ~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 759 (863)
|.......+..+++|+.|++++|.+.++++ +..+++|+.|++++|. ++.++.+..+++|+.|++++|.
T Consensus 144 -------n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 144 -------NKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -------SCCCCCGGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred -------CcCCcchhhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence 333333234556666667776666655533 2356677777777663 3445556667777777777665
Q ss_pred c
Q 038405 760 A 760 (863)
Q Consensus 760 ~ 760 (863)
.
T Consensus 212 i 212 (291)
T 1h6t_A 212 C 212 (291)
T ss_dssp E
T ss_pred c
Confidence 3
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=2.7e-15 Score=157.72 Aligned_cols=126 Identities=20% Similarity=0.254 Sum_probs=110.7
Q ss_pred ccccccceEEEeccCCccccCCCC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhccccccee
Q 038405 496 ADSWREDFRLSLWGSSIEYLPETP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCL 574 (863)
Q Consensus 496 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 574 (863)
......++.+.+.++.+..++... +++|++|++++|.+..+++ +..+++|++|++++| .+..+|. ++.+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence 345678999999999999887765 9999999999999999887 889999999999999 7888775 9999999999
Q ss_pred eccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcch
Q 038405 575 NLSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 575 ~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 629 (863)
++++|.+..+| .+..+++|++|++++|. +..++ . ++++++|++|++++|.+
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-G-GGGCTTCSEEECCSSCC
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch-h-hccCCCCCEEEccCCcc
Confidence 99999999985 68999999999999997 66664 3 88999999999987654
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=1.9e-14 Score=147.99 Aligned_cols=104 Identities=24% Similarity=0.272 Sum_probs=76.1
Q ss_pred CCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCCccccchh-hhcccCccEEe
Q 038405 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTSIEELPSE-IMYLKNLKILL 598 (863)
Q Consensus 521 ~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~ 598 (863)
...++++++++.+..+|..+ .+.|++|+|++| .+..+ |..++++++|++|+|++|.|..++.. +.++++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCC---CCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 35677788888787777653 257888888888 55544 44677888888888888888877654 67788888888
Q ss_pred cCCCCCccccchhhhcCCCCCceeeccCcch
Q 038405 599 LDGMRHFHLIPARVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 599 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 629 (863)
+++|. +..+|...+..+++|++|++++|.+
T Consensus 90 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 90 LANNQ-LASLPLGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCc-ccccChhHhcccCCCCEEEcCCCcC
Confidence 88877 6666666677888888888877644
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=1.5e-15 Score=167.25 Aligned_cols=109 Identities=15% Similarity=0.086 Sum_probs=71.8
Q ss_pred CCCccEEEeecccccccchh----hhhcCCCccEEeccCCcCcc----ccchhh-------hcccccceeeccCCCccc-
Q 038405 520 CPHLQTLLVRFTVLEIFPHR----FFESMGALKVLDLSYNLDLT----QLPAEM-------GALINLRCLNLSNTSIEE- 583 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~----~~~~l~~L~~L~Ls~~~~i~----~lp~~i-------~~L~~L~~L~L~~~~i~~- 583 (863)
+++|++|++++|.+...... .+..+++|++|+|++| .+. .+|..+ ..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 67788888888866554322 2557788888888876 332 334444 577888888888887775
Q ss_pred ----cchhhhcccCccEEecCCCCCccccchh---hhcCC---------CCCceeeccCcch
Q 038405 584 ----LPSEIMYLKNLKILLLDGMRHFHLIPAR---VFSSL---------LSLKVFSLFSTEL 629 (863)
Q Consensus 584 ----lP~~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~L---------~~L~~L~l~~~~~ 629 (863)
+|..+.++++|++|++++|......+.. .+..+ ++|++|++++|.+
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 6777888888888888888632111111 13333 7788888877654
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=1.1e-15 Score=172.91 Aligned_cols=102 Identities=20% Similarity=0.101 Sum_probs=51.0
Q ss_pred cceEEEeccCCccccCCC---C-CCCccEEEeecccccccc----hhhhhcCCCccEEeccCCcCccc-cchhhh-ccc-
Q 038405 501 EDFRLSLWGSSIEYLPET---P-CPHLQTLLVRFTVLEIFP----HRFFESMGALKVLDLSYNLDLTQ-LPAEMG-ALI- 569 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~---~-~~~Lr~L~l~~~~l~~l~----~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~-~L~- 569 (863)
.++.+.+.++.+...+.. . +++|++|++++|.+.... ...+..+++|++|+|++| .+.. .+..+. .+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCS
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhh
Confidence 345555555555433211 1 556666666666544211 122445566666666665 3332 222222 233
Q ss_pred ---ccceeeccCCCcc-----ccchhhhcccCccEEecCCCC
Q 038405 570 ---NLRCLNLSNTSIE-----ELPSEIMYLKNLKILLLDGMR 603 (863)
Q Consensus 570 ---~L~~L~L~~~~i~-----~lP~~i~~L~~L~~L~l~~~~ 603 (863)
+|++|++++|.|. .+|..+.++++|++|++++|.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 4666666666555 345555666666666666655
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=4.2e-15 Score=171.49 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=45.7
Q ss_pred cccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeecc
Q 038405 678 CIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVN 757 (863)
Q Consensus 678 ~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 757 (863)
+|+.|++++|.......+..+++|+.|+|++|.+.++++ +..+++|+.|+|++|. +..++.+..+++|+.|+|++
T Consensus 132 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 132 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS 206 (605)
T ss_dssp TCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCS
T ss_pred ccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccC
Confidence 444444444444333335556667777777666655533 2356677777777763 34455666677777777776
Q ss_pred Ccc
Q 038405 758 CQA 760 (863)
Q Consensus 758 ~~~ 760 (863)
|..
T Consensus 207 N~l 209 (605)
T 1m9s_A 207 QEC 209 (605)
T ss_dssp EEE
T ss_pred CcC
Confidence 654
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=3.2e-15 Score=161.25 Aligned_cols=104 Identities=17% Similarity=0.117 Sum_probs=55.0
Q ss_pred CCccEEEeecccccccchhhhhcCCCccEEeccCCcCcc-c-cchhhhcccccceeeccCCCcc-ccchhhhcccCccEE
Q 038405 521 PHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLT-Q-LPAEMGALINLRCLNLSNTSIE-ELPSEIMYLKNLKIL 597 (863)
Q Consensus 521 ~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~-~-lp~~i~~L~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L 597 (863)
++++.|.+.+|.+...+.. +..+++|++|++++| .+. . +|..+..+++|++|++++|.+. ..|..++++++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 5556666665555444444 234556666666665 232 2 5555555666666666666554 344555556666666
Q ss_pred ecCCCCCccc--cchhhhcCCCCCceeeccCc
Q 038405 598 LLDGMRHFHL--IPARVFSSLLSLKVFSLFST 627 (863)
Q Consensus 598 ~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~ 627 (863)
++++|..+.. +|.. +.++++|++|++++|
T Consensus 148 ~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 148 NLSGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred ECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 6665532331 3332 455555666655544
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=4.5e-15 Score=171.22 Aligned_cols=168 Identities=18% Similarity=0.230 Sum_probs=95.2
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEec
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
+++|+.|.+++|.+..++. +..+++|++|+|++| .+..+|. ++.+++|++|+|++|.|..+| .+..+++|++|+|
T Consensus 42 L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 5566666666666655553 556666666666666 5555554 666666666666666666655 4666666666666
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccc
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCI 679 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L 679 (863)
++|. +..+|. +..|++|+.|++++|.+..+ .. ...+++|
T Consensus 117 s~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~l-----------~~---------------------------l~~l~~L 155 (605)
T 1m9s_A 117 EHNG-ISDING--LVHLPQLESLYLGNNKITDI-----------TV---------------------------LSRLTKL 155 (605)
T ss_dssp TTSC-CCCCGG--GGGCTTCSEEECCSSCCCCC-----------GG---------------------------GGSCTTC
T ss_pred cCCC-CCCCcc--ccCCCccCEEECCCCccCCc-----------hh---------------------------hcccCCC
Confidence 6665 444432 55666666666665533211 00 1123355
Q ss_pred cEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCC
Q 038405 680 KRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPV 737 (863)
Q Consensus 680 ~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~ 737 (863)
+.|+|++|......++..+++|+.|+|++|.+.+++ .+..+++|+.|+|++|+.
T Consensus 156 ~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~----~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 156 DTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp SEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG----GGTTCTTCSEEECCSEEE
T ss_pred CEEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh----HHccCCCCCEEEccCCcC
Confidence 556665555544444555666666666666655542 233556666666666543
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=155.22 Aligned_cols=198 Identities=17% Similarity=0.108 Sum_probs=93.3
Q ss_pred CCccEEeccCCcCccccchhh--hcccccceeeccCCCcccc-c----hhhhcccCccEEecCCCCCccccchhhhcCCC
Q 038405 545 GALKVLDLSYNLDLTQLPAEM--GALINLRCLNLSNTSIEEL-P----SEIMYLKNLKILLLDGMRHFHLIPARVFSSLL 617 (863)
Q Consensus 545 ~~L~~L~Ls~~~~i~~lp~~i--~~L~~L~~L~L~~~~i~~l-P----~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~ 617 (863)
++|++|++++|......|..+ +.+++|++|++++|.+... | ..+..+++|++|++++|. +..+|...+++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCC
Confidence 445555555553223444444 5555555555555555431 1 123345555555555554 3333333355555
Q ss_pred CCceeeccCcchhh---hccCC-CCccccchhhhhhcccceeeEEeecCchhhhhhhcc-ccccccccEEEecccCCccc
Q 038405 618 SLKVFSLFSTELIE---LHRMP-PNQTTILDELECLGNQIYEISITLGSASALFKINFS-WKLCSCIKRLTIMHNLDSHS 692 (863)
Q Consensus 618 ~L~~L~l~~~~~~~---~~~~~-~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~ 692 (863)
+|++|++++|.+.. +.... ......|+.|....|.++ .+...... ...+++|+.|++++|.....
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~----------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME----------TPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC----------CHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC----------chHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 55555555554321 10000 001112222222221111 01110000 12234666777777665544
Q ss_pred cc--cccc---CCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeeccCc
Q 038405 693 ID--LRNM---MHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 693 ~~--l~~~---~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 759 (863)
.+ +..+ ++|++|++++|.++.++.. .+++|+.|++++|.. +.++.+..+++|+.|+|++|.
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-----~~~~L~~L~Ls~N~l-~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLEQVPKG-----LPAKLRVLDLSSNRL-NRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCCSCCSC-----CCSCCSCEECCSCCC-CSCCCTTSCCCCSCEECSSTT
T ss_pred chhhHHhccCcCcCCEEECCCCCCCchhhh-----hcCCCCEEECCCCcC-CCCchhhhCCCccEEECcCCC
Confidence 21 3333 5777777777776655432 136777777777743 333445666777777777665
No 96
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=7.9e-14 Score=154.95 Aligned_cols=283 Identities=12% Similarity=0.055 Sum_probs=173.5
Q ss_pred ccccchhhHHHHHHHhh-cc------CCceEEEE--EcCCCChHHHHhhhhhhccccc--cCCCC-EEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKLDEVWGCI-ED------QSEQTIGL--YGMGGVGKITLLKKPNNKFLDV--NHCFD-LVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~--~~~F~-~~~wv~~~~~~~~~ 220 (863)
+.++||+++++++.+++ .. ...+.+.| +|++|+||||||+.+++..... ...|+ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57999999999999988 42 24456666 9999999999999999876211 01222 46788877777888
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHHHhc--cCcEEEEEccccccc--------ccccccccC---CCCC--CCe
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILISLR--RKKFVLLLDDVWERL--------DLSKTGVSL---SDCQ--NGS 285 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~~~~~l---~~~~--~gs 285 (863)
.++..++.+++..... ...+..+....+.+.+. +++++|||||++... .+..+...+ +..+ ...
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999988764311 12234555666666665 679999999998732 122222222 1112 345
Q ss_pred EEEEeecchh-------------------hhcccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcC------CCh
Q 038405 286 KIVFTTRSEE-------------------VCVECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECK------GLP 340 (863)
Q Consensus 286 ~iivTTr~~~-------------------v~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------glP 340 (863)
.||+||+... +.+.+++.++++++|...+..... ...-..+....|++.|+ |.|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCCcH
Confidence 5887887443 117889999999999865431110 11122577889999999 999
Q ss_pred HHHHHHHHHHh-----CC---CChhhHHHHHHHHhcCCCccCCCCccccchhhcccCCCChhhHhHHhhhhcCCC--CCC
Q 038405 341 LALITIARAMS-----SR---RSPREWQYVIDELQRNPSRFAGMGNLVFPILRFSYDNLTDDTLKTCFLYCSLFP--EEN 410 (863)
Q Consensus 341 Lai~~~~~~l~-----~~---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~Fp--~~~ 410 (863)
..+..+..... .. -+.+.+..+...... ...+.-++..||++ .+.++..++.+. .+.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSIH-ELIILRLIAEATLGGME 326 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCC
Confidence 76555443221 11 123333333321100 23345577889986 888888888653 333
Q ss_pred ccchHHHHHHHH--h-c--CCCCCccchhHHhhhHHHHHHHHHHhcccccC
Q 038405 411 NIRKDELIDLWI--G-E--GFLSDFRSITTARNQGEYIIGSLKLACLLESG 456 (863)
Q Consensus 411 ~i~~~~Li~~wi--a-e--g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 456 (863)
.++...+...+. + . |. .. ........+++.|.+.+++...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNV-KP-----RGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCC-CC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHHHHHHHHhhcCC-CC-----CCHHHHHHHHHHHHhCCCEEee
Confidence 455555544332 2 1 21 00 0123455679999999999764
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.54 E-value=7.7e-14 Score=151.31 Aligned_cols=283 Identities=12% Similarity=0.031 Sum_probs=169.5
Q ss_pred CccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC------CHHHHHHH
Q 038405 152 TEKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG------NLEKIQEV 225 (863)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~------~~~~~~~~ 225 (863)
++.++||+++++++.+++... +++.|+|++|+|||||++++++.. . .+|+.+.... +...+.+.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHH
Confidence 357999999999999998764 799999999999999999998764 1 6777765432 55666666
Q ss_pred HHHHcCCC--------------ccc--ccccChhhHHHHHHHHhcc-CcEEEEEcccccccc--------cccccccCCC
Q 038405 226 IRKKLDIS--------------DYI--WNMKGEYDRAVEILISLRR-KKFVLLLDDVWERLD--------LSKTGVSLSD 280 (863)
Q Consensus 226 i~~~l~~~--------------~~~--~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~--------~~~~~~~l~~ 280 (863)
+...+... ... ....+..+....+.+..+. ++++||+||++.... +......+..
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 66655420 000 0112344455555555543 499999999987433 1111111111
Q ss_pred CCCCeEEEEeecchhh----------------------hcccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCC
Q 038405 281 CQNGSKIVFTTRSEEV----------------------CVECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKG 338 (863)
Q Consensus 281 ~~~gs~iivTTr~~~v----------------------~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 338 (863)
..++.++|+|++.... .+.+|+.+|+.+++.......... ...+.+..|++.|+|
T Consensus 161 ~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 161 SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELLDG 237 (350)
T ss_dssp HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHHTT
T ss_pred hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCC
Confidence 1247889998875321 078999999999998754322111 125678899999999
Q ss_pred ChHHHHHHHHHHhCCCChhhH-HHHHHHHhcCCCccCCCCccccchhhcccCCCChhhHhHHhhhhcCCCCCCccchHHH
Q 038405 339 LPLALITIARAMSSRRSPREW-QYVIDELQRNPSRFAGMGNLVFPILRFSYDNLTDDTLKTCFLYCSLFPEENNIRKDEL 417 (863)
Q Consensus 339 lPLai~~~~~~l~~~~~~~~w-~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~Fp~~~~i~~~~L 417 (863)
.|+++..++..+....+...+ ....+...... ...+. .+.+ + ++. .+..+..+|. + ..+...+
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~---~l~~-~-~~~-~~~~l~~la~---g-~~~~~~l 301 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI------MGELE---ELRR-R-SPR-YVDILRAIAL---G-YNRWSLI 301 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH------HHHHH---HHHH-H-CHH-HHHHHHHHHT---T-CCSHHHH
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH------HHHHH---HHHh-C-Chh-HHHHHHHHHh---C-CCCHHHH
Confidence 999999998765432222222 11111110000 00111 1111 1 554 7888888887 2 2344444
Q ss_pred HHHHHhcCCCCCccchhHHhhhHHHHHHHHHHhcccccCCCCCCeEEe-chHHHHHH
Q 038405 418 IDLWIGEGFLSDFRSITTARNQGEYIIGSLKLACLLESGEYSEDFVKM-HDVVRDMA 473 (863)
Q Consensus 418 i~~wiaeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~m-Hdlv~d~~ 473 (863)
....-+. .- . ........+++.|.+.+++.... ..|.+ |++++++.
T Consensus 302 ~~~~~~~-~~-~-----~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 302 RDYLAVK-GT-K-----IPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHT-TC-C-----CCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHH
T ss_pred HHHHHHH-hC-C-----CCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHH
Confidence 4332111 00 0 01234567899999999998652 34554 67777764
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=4e-15 Score=163.74 Aligned_cols=100 Identities=15% Similarity=0.097 Sum_probs=75.7
Q ss_pred eecccccccchhhhhcCCCccEEeccCCcCcc-c----cchhhhcccccceeeccCCCcc----ccchhh-------hcc
Q 038405 528 VRFTVLEIFPHRFFESMGALKVLDLSYNLDLT-Q----LPAEMGALINLRCLNLSNTSIE----ELPSEI-------MYL 591 (863)
Q Consensus 528 l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~-~----lp~~i~~L~~L~~L~L~~~~i~----~lP~~i-------~~L 591 (863)
+....+..++.. +..+++|++|+|++| .+. . ++..+..+++|++|+|++|.+. .+|..+ .++
T Consensus 16 l~~~~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 16 ITTEDEKSVFAV-LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp CCSHHHHTTSHH-HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHH-HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence 333345556554 778999999999999 444 3 3445678999999999998655 345544 689
Q ss_pred cCccEEecCCCCCcc----ccchhhhcCCCCCceeeccCcchh
Q 038405 592 KNLKILLLDGMRHFH----LIPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 592 ~~L~~L~l~~~~~l~----~lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
++|++|++++|.... .+|.. +.++++|++|++++|.+.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCH
T ss_pred CcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCC
Confidence 999999999998443 36655 789999999999998764
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.52 E-value=1.3e-14 Score=169.59 Aligned_cols=281 Identities=13% Similarity=0.088 Sum_probs=145.7
Q ss_pred CCCccEEEeecccccccc----hhhhhcCCCccEEeccCCcCccccchhhhcccccceeecc------------------
Q 038405 520 CPHLQTLLVRFTVLEIFP----HRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLS------------------ 577 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~----~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~------------------ 577 (863)
+++|++|++++|.+..+. ...+..+++|++|++++| .+..+|..+.++++|++|+++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 555666666555443111 122345556666666655 444555555555555555554
Q ss_pred ---------CCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhh
Q 038405 578 ---------NTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELEC 648 (863)
Q Consensus 578 ---------~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 648 (863)
++....+|..+..+++|++|++++|.........++.++++|++|++.++ +. ...+..+..
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~---------~~~l~~~~~ 339 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IG---------DRGLEVLAQ 339 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH---------HHHHHHHHH
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cC---------HHHHHHHHH
Confidence 43344455555566666666666665211112222456666666666521 11 111222211
Q ss_pred hcccceeeEEee----------cCchhhhhhhccccccccccEEEecccCCcccc--ccc-ccCCcceeEeccC----cc
Q 038405 649 LGNQIYEISITL----------GSASALFKINFSWKLCSCIKRLTIMHNLDSHSI--DLR-NMMHLETLNIVEC----SL 711 (863)
Q Consensus 649 l~n~L~~l~~~~----------~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~l~-~~~~L~~L~l~~~----~l 711 (863)
...+|+.+.+.. ++.-....+......+++|+.|++..+...... .+. .+++|++|+++++ .+
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 112455565552 111111111111234567888888555443322 133 3778888888632 24
Q ss_pred cccCCCC---CCCCCCCCCCEEEEecCCC-CCC--Cccc-ccCCCcceEeeccCcchhhhhcccCCccccccCccCcccc
Q 038405 712 ERVDPTF---NGWTNFHNLHHLSIRVCPV-IRD--LTWI-REAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLM 784 (863)
Q Consensus 712 ~~~~~~~---~~~~~l~~L~~L~L~~~~~-~~~--l~~l-~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~ 784 (863)
++.+... .....+++|+.|+++.|.. +.. +..+ ..+|+|+.|+|++|....... ......+++|+
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------~~~~~~~~~L~ 491 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL--------MEFSRGCPNLQ 491 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH--------HHHHTCCTTCC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH--------HHHHhcCcccC
Confidence 4321100 0123477888888877653 221 1223 347888888888886432111 11234678999
Q ss_pred eecccccccccc--cccCccCCCCccEEeeccCCCCCCC
Q 038405 785 VIDLDSLPSLKR--ICHGTMPFPSLQNVSVTNCPNLREL 821 (863)
Q Consensus 785 ~L~L~~~~~L~~--l~~~~~~~~~L~~L~i~~C~~L~~l 821 (863)
.|+|++|+ +.. +......+++|+.|++++|. ++.-
T Consensus 492 ~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 492 KLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp EEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred eeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 99999987 442 22223457899999999997 6543
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=6.9e-14 Score=159.38 Aligned_cols=187 Identities=19% Similarity=0.196 Sum_probs=99.3
Q ss_pred CccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEecCC
Q 038405 522 HLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLLDG 601 (863)
Q Consensus 522 ~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~ 601 (863)
+|++|++++|.+..+|..+ +++|++|+|++| .+..+| +.+++|++|++++|.|+.+|. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 4455555555554444432 244555555555 444555 334555555555555555554 333 555555555
Q ss_pred CCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccccE
Q 038405 602 MRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCIKR 681 (863)
Q Consensus 602 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~ 681 (863)
|. +..+|. .+++|++|++++|.+..++. .+++|+.
T Consensus 130 N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp~----------------------------------------~l~~L~~ 164 (571)
T 3cvr_A 130 NQ-LTMLPE----LPALLEYINADNNQLTMLPE----------------------------------------LPTSLEV 164 (571)
T ss_dssp SC-CSCCCC----CCTTCCEEECCSSCCSCCCC----------------------------------------CCTTCCE
T ss_pred Cc-CCCCCC----cCccccEEeCCCCccCcCCC----------------------------------------cCCCcCE
Confidence 54 333443 34555555555443221100 0124455
Q ss_pred EEecccCCcccccccccCCcceeEeccCcccccCCCCCC--CCCCCCCCEEEEecCCCCCCCcccccCCCcceEeeccCc
Q 038405 682 LTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNG--WTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 682 L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 759 (863)
|++++|.....+.+. ++|+.|++++|.++.++. ... ....+.|+.|+|++|.....++.+..+++|+.|+|++|.
T Consensus 165 L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 165 LSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp EECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred EECCCCCCCCcchhh--CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 555555443333322 678888888887776654 210 001122389999988655444557779999999999998
Q ss_pred chhhhhc
Q 038405 760 ALSEIIE 766 (863)
Q Consensus 760 ~l~~i~~ 766 (863)
....+|.
T Consensus 242 l~~~~p~ 248 (571)
T 3cvr_A 242 LSSRIRE 248 (571)
T ss_dssp CCHHHHH
T ss_pred CCCcCHH
Confidence 7666554
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=1.7e-14 Score=155.60 Aligned_cols=127 Identities=16% Similarity=0.075 Sum_probs=102.5
Q ss_pred cceEEEeccCCccccCCCC--CCCccEEEeeccccccc-chhhhhcCCCccEEeccCCcCccccchhhhcccccceeecc
Q 038405 501 EDFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIF-PHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLS 577 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l-~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 577 (863)
.++.+.+.++.+...+... +++|++|++++|.+... .+..+..+++|++|++++|......|..++.+++|++|+++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 5677788877776654444 89999999999987643 33458899999999999994444778889999999999999
Q ss_pred CC-Ccc--ccchhhhcccCccEEecCCCCCccc--cchhhhcCCC-CCceeeccCcc
Q 038405 578 NT-SIE--ELPSEIMYLKNLKILLLDGMRHFHL--IPARVFSSLL-SLKVFSLFSTE 628 (863)
Q Consensus 578 ~~-~i~--~lP~~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~-~L~~L~l~~~~ 628 (863)
+| .+. .+|..+.++++|++|++++|..+.. ++.. +..++ +|++|++++|.
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCG
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCc
Confidence 99 788 4788899999999999999933543 4544 78899 99999998863
No 102
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=3.2e-13 Score=146.86 Aligned_cols=279 Identities=11% Similarity=0.100 Sum_probs=162.4
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC-----CCHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE-----GNLEKIQEVIR 227 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i~ 227 (863)
+.++||+++++++.+ +.. +++.|+|++|+|||||++++++.. .. ..+|+.+... .+.......+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 579999999999999 765 699999999999999999999876 22 2578887642 34444444444
Q ss_pred HHcC--------------C----Ccc----cc-----cccChhhHHHHHHHHhccCcEEEEEccccccc-----cccccc
Q 038405 228 KKLD--------------I----SDY----IW-----NMKGEYDRAVEILISLRRKKFVLLLDDVWERL-----DLSKTG 275 (863)
Q Consensus 228 ~~l~--------------~----~~~----~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~~~ 275 (863)
+.+. . ... .. ...........+.+.-+ ++++|||||++... ++..+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 3321 0 000 00 01122223333322211 49999999997632 222222
Q ss_pred ccCCCCCCCeEEEEeecchhh------------------h----cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHH
Q 038405 276 VSLSDCQNGSKIVFTTRSEEV------------------C----VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVV 333 (863)
Q Consensus 276 ~~l~~~~~gs~iivTTr~~~v------------------~----l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~ 333 (863)
..+.....+.++|+|++.... . +.+|+.+|+.+++...+....... .. . ..|+
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~---~-~~i~ 236 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD---Y-EVVY 236 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC---H-HHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc---H-HHHH
Confidence 222122246789999886421 0 789999999999987543211111 11 1 8899
Q ss_pred HHcCCChHHHHHHHHHHhCCCChhhHHH-HHHHHhcCCCccCCCCccccchhh-cccC--CCChhhHhHHhhhhcCCCCC
Q 038405 334 GECKGLPLALITIARAMSSRRSPREWQY-VIDELQRNPSRFAGMGNLVFPILR-FSYD--NLTDDTLKTCFLYCSLFPEE 409 (863)
Q Consensus 334 ~~c~glPLai~~~~~~l~~~~~~~~w~~-~~~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~~k~cfl~~~~Fp~~ 409 (863)
+.|+|.|+++..++..+....+...|.. +.+.... .+..-+. +.++ .|++. .+..+..+|. +
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~~-~~~~l~~la~---g 302 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARKR-YLNIMRTLSK---C 302 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHHH-HHHHHHHHTT---C
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccHH-HHHHHHHHHc---C
Confidence 9999999999999887654333333321 1111100 0111111 1111 56675 8899988887 2
Q ss_pred CccchHHHHHHHH-hcCCCCCccchhHHhhhHHHHHHHHHHhcccccCCCCCCeEE-echHHHHHH
Q 038405 410 NNIRKDELIDLWI-GEGFLSDFRSITTARNQGEYIIGSLKLACLLESGEYSEDFVK-MHDVVRDMA 473 (863)
Q Consensus 410 ~~i~~~~Li~~wi-aeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~-mHdlv~d~~ 473 (863)
. +...+....- ..|. . ........+++.|.+.+++.... ..|+ .|++++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~--~-----~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI--E-----ISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp B--CHHHHHHHHHHHHCS--C-----CCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred C--CHHHHHHHHHHhcCC--C-----CCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 1 3444332110 1121 0 01234567799999999998653 3455 578888753
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=4.1e-14 Score=154.00 Aligned_cols=206 Identities=17% Similarity=0.098 Sum_probs=120.0
Q ss_pred CCCccEEEeecccccccch----hhhhcCC-CccEEeccCCcCccc-cchhhhcc-----cccceeeccCCCccccchh-
Q 038405 520 CPHLQTLLVRFTVLEIFPH----RFFESMG-ALKVLDLSYNLDLTQ-LPAEMGAL-----INLRCLNLSNTSIEELPSE- 587 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~----~~~~~l~-~L~~L~Ls~~~~i~~-lp~~i~~L-----~~L~~L~L~~~~i~~lP~~- 587 (863)
.++|++|++++|.+...+. ..+..++ +|++|+|++| .+.. .+..+..+ ++|++|+|++|.+...+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 4568888888888887776 5677787 8888888888 5543 35566665 8888888888888765433
Q ss_pred ----hhcc-cCccEEecCCCCCccccchhhh----cC-CCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeE
Q 038405 588 ----IMYL-KNLKILLLDGMRHFHLIPARVF----SS-LLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEIS 657 (863)
Q Consensus 588 ----i~~L-~~L~~L~l~~~~~l~~lp~~~i----~~-L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~ 657 (863)
+..+ ++|++|++++|. +...+...+ .. .++|++|++++|.+.... ...+..
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~---------~~~l~~--------- 160 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS---------SDELIQ--------- 160 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC---------HHHHHH---------
T ss_pred HHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH---------HHHHHH---------
Confidence 4444 788888888887 555444323 33 358888888887654210 011100
Q ss_pred EeecCchhhhhhhcccccc-ccccEEEecccCCccccc------cccc-CCcceeEeccCcccccCCC--CCCCCC-CCC
Q 038405 658 ITLGSASALFKINFSWKLC-SCIKRLTIMHNLDSHSID------LRNM-MHLETLNIVECSLERVDPT--FNGWTN-FHN 726 (863)
Q Consensus 658 ~~~~~~~~l~~l~~~~~~~-~~L~~L~l~~~~~~~~~~------l~~~-~~L~~L~l~~~~l~~~~~~--~~~~~~-l~~ 726 (863)
..... ++|+.|++++|....... +..+ ++|++|++++|.+.+.... ...+.. .++
T Consensus 161 --------------~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~ 226 (362)
T 3goz_A 161 --------------ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226 (362)
T ss_dssp --------------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT
T ss_pred --------------HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC
Confidence 00011 256666666665433221 2333 3666677766665542100 000111 246
Q ss_pred CCEEEEecCCCCCCC-----cccccCCCcceEeeccCc
Q 038405 727 LHHLSIRVCPVIRDL-----TWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 727 L~~L~L~~~~~~~~l-----~~l~~l~~L~~L~L~~~~ 759 (863)
|+.|+|++|...... ..+..+++|+.|+|++|.
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 667777666433221 123456667777776665
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=9.3e-15 Score=159.15 Aligned_cols=252 Identities=14% Similarity=0.099 Sum_probs=168.1
Q ss_pred EEeecccccccchhhhhcCCCccEEeccCCcCccccc-----hhhhccc-ccceeeccCCCcccc-chhhhcc-----cC
Q 038405 526 LLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-----AEMGALI-NLRCLNLSNTSIEEL-PSEIMYL-----KN 593 (863)
Q Consensus 526 L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-----~~i~~L~-~L~~L~L~~~~i~~l-P~~i~~L-----~~ 593 (863)
+.+++|.+....+.++...++|++|+|++| .+...+ ..+.+++ +|++|+|++|.|... +..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 566777777777776777777999999999 676665 5677888 899999999999876 4556665 99
Q ss_pred ccEEecCCCCCccccchhh----hcCC-CCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCchhhhh
Q 038405 594 LKILLLDGMRHFHLIPARV----FSSL-LSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSASALFK 668 (863)
Q Consensus 594 L~~L~l~~~~~l~~lp~~~----i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~ 668 (863)
|++|++++|. +...+... +..+ ++|++|++++|.+.... ...+.
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~---------~~~l~--------------------- 130 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS---------SSEFK--------------------- 130 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC---------HHHHH---------------------
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH---------HHHHH---------------------
Confidence 9999999998 54443332 3444 89999999988754221 01110
Q ss_pred hhccccc-cccccEEEecccCCccccc------ccccC-CcceeEeccCcccccCCCC--CCCCCC-CCCCEEEEecCCC
Q 038405 669 INFSWKL-CSCIKRLTIMHNLDSHSID------LRNMM-HLETLNIVECSLERVDPTF--NGWTNF-HNLHHLSIRVCPV 737 (863)
Q Consensus 669 l~~~~~~-~~~L~~L~l~~~~~~~~~~------l~~~~-~L~~L~l~~~~l~~~~~~~--~~~~~l-~~L~~L~L~~~~~ 737 (863)
..... +++|+.|++++|....... +..++ +|++|++++|.+.+..+.. ..+..+ ++|+.|+|++|..
T Consensus 131 --~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 131 --QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp --HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred --HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 00111 3478999999987654221 34454 9999999999987653210 011234 5999999999964
Q ss_pred CCC----C-ccccc-CCCcceEeeccCcchhhhhcccCCccccccCccCcccceecccccc-------cccccccCccCC
Q 038405 738 IRD----L-TWIRE-APNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLP-------SLKRICHGTMPF 804 (863)
Q Consensus 738 ~~~----l-~~l~~-l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~-------~L~~l~~~~~~~ 804 (863)
... + ..+.. .++|++|+|++|.....-+ ..+......+++|+.|+++++. .+..+......+
T Consensus 209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-----~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l 283 (362)
T 3goz_A 209 GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL-----ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283 (362)
T ss_dssp GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH-----HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC
T ss_pred ChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH-----HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC
Confidence 332 2 23444 4699999999997432111 1112234668899999998875 233444444456
Q ss_pred CCccEEeeccCC
Q 038405 805 PSLQNVSVTNCP 816 (863)
Q Consensus 805 ~~L~~L~i~~C~ 816 (863)
++|+.|++++++
T Consensus 284 ~~L~~LdL~~N~ 295 (362)
T 3goz_A 284 QKIILVDKNGKE 295 (362)
T ss_dssp CEEEEECTTSCB
T ss_pred CceEEEecCCCc
Confidence 777778777654
No 105
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=3.6e-14 Score=165.85 Aligned_cols=290 Identities=16% Similarity=0.116 Sum_probs=167.2
Q ss_pred ceEEEeccCCc-c--ccCCCC--CCCccEEEeecccccccc----hhhhhcCCCccEEeccCCcCcc-----ccchhhhc
Q 038405 502 DFRLSLWGSSI-E--YLPETP--CPHLQTLLVRFTVLEIFP----HRFFESMGALKVLDLSYNLDLT-----QLPAEMGA 567 (863)
Q Consensus 502 ~~~l~l~~~~~-~--~l~~~~--~~~Lr~L~l~~~~l~~l~----~~~~~~l~~L~~L~Ls~~~~i~-----~lp~~i~~ 567 (863)
++.+.+.++.. . .++... |++|++|++++|.+.... ..++..+++|++|++++| .+. .++..+.+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARN 218 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHH
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhh
Confidence 66777765541 1 122221 788899998888654432 234567888999999888 443 55666678
Q ss_pred ccccceeeccCCCccccchhhhcccCccEEecCCCCCc--------------------------cccchhhhcCCCCCce
Q 038405 568 LINLRCLNLSNTSIEELPSEIMYLKNLKILLLDGMRHF--------------------------HLIPARVFSSLLSLKV 621 (863)
Q Consensus 568 L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l--------------------------~~lp~~~i~~L~~L~~ 621 (863)
+++|++|++++|.+..+|..+.++++|++|+++++... ..+|.. +..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-GGGGGGCCE
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-HhhcCCCcE
Confidence 88999999999888888888888888888888643211 112221 334445555
Q ss_pred eeccCcchhhhccCCCCccccchh-hhhhcccceeeEEeecCchhhhhhhccccccccccEEEecc----------cCCc
Q 038405 622 FSLFSTELIELHRMPPNQTTILDE-LECLGNQIYEISITLGSASALFKINFSWKLCSCIKRLTIMH----------NLDS 690 (863)
Q Consensus 622 L~l~~~~~~~~~~~~~~~~~~l~~-L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~----------~~~~ 690 (863)
|++++|.+... .+.. +..+. +|+.+.+. +......+......+++|+.|++++ |...
T Consensus 298 L~Ls~~~l~~~---------~~~~~~~~~~-~L~~L~L~--~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 298 LDLLYALLETE---------DHCTLIQKCP-NLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp EEETTCCCCHH---------HHHHHHTTCT-TCCEEEEE--GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred EecCCCcCCHH---------HHHHHHHhCc-CCCEEecc--CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 55554432110 1111 11112 44444444 1111122222223466788888883 3333
Q ss_pred cccc----ccccCCcceeEeccCcccccCCCCCCC-CCCCCCCEEEEec---CCCCCCCc-------ccccCCCcceEee
Q 038405 691 HSID----LRNMMHLETLNIVECSLERVDPTFNGW-TNFHNLHHLSIRV---CPVIRDLT-------WIREAPNLQFLSL 755 (863)
Q Consensus 691 ~~~~----l~~~~~L~~L~l~~~~l~~~~~~~~~~-~~l~~L~~L~L~~---~~~~~~l~-------~l~~l~~L~~L~L 755 (863)
.... ...+++|++|+++.+.+++.... .+ ..+++|+.|++++ |..++..| .+..+++|+.|+|
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~--~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLE--SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHH--HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHH--HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence 2221 34578888888866665543211 11 1377889999885 33444321 1456889999999
Q ss_pred ccCcc-h-hhhhcccCCccccccCccCcccceecccccccccc--cccCccCCCCccEEeeccCC
Q 038405 756 VNCQA-L-SEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKR--ICHGTMPFPSLQNVSVTNCP 816 (863)
Q Consensus 756 ~~~~~-l-~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~--l~~~~~~~~~L~~L~i~~C~ 816 (863)
++|.. + ...+. .....+++|+.|.++++. +.. +......+++|+.|++++|+
T Consensus 444 ~~~~~~l~~~~~~--------~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 444 YLRQGGLTDLGLS--------YIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp ECCGGGCCHHHHH--------HHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred ecCCCCccHHHHH--------HHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 77653 1 11111 112347889999998764 432 22223457899999999886
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=9.5e-14 Score=138.25 Aligned_cols=126 Identities=26% Similarity=0.385 Sum_probs=105.7
Q ss_pred eEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceeeccCCCc
Q 038405 503 FRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLNLSNTSI 581 (863)
Q Consensus 503 ~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~~i 581 (863)
+.+...++.+..+|....++|++|++++|.+..++...|..+++|++|++++| .+..+|.. +..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcC
Confidence 35666677778888777889999999999998998888889999999999999 67777654 58899999999999999
Q ss_pred cccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchh
Q 038405 582 EELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 582 ~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
..+|.. +.++++|++|++++|. +..+|...+.++++|++|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccc
Confidence 988876 6889999999999987 67777776888999999999877543
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=8.6e-14 Score=139.64 Aligned_cols=129 Identities=23% Similarity=0.406 Sum_probs=100.5
Q ss_pred eEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCCc
Q 038405 503 FRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTSI 581 (863)
Q Consensus 503 ~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i 581 (863)
+.+...++.+..+|....++++.|++++|.+..++...|..+++|++|+|++| .+..+ |..+.++++|++|+|++|.|
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 35666777777777766778888888888888888777888888888888888 55554 67788888888888888888
Q ss_pred cccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhc
Q 038405 582 EELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELH 633 (863)
Q Consensus 582 ~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 633 (863)
+.+|.. +..+++|++|++++|. +..++...+..+++|++|++++|.+..+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 888776 5778888888888887 56665555888888888888887765544
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=6.5e-14 Score=148.94 Aligned_cols=196 Identities=15% Similarity=0.056 Sum_probs=102.6
Q ss_pred ceEEEeccCCcccc-CCC---C-CCCccEEEeeccccccc----chhhhhcCCCccEEeccCCcCcccc-chhhhccccc
Q 038405 502 DFRLSLWGSSIEYL-PET---P-CPHLQTLLVRFTVLEIF----PHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINL 571 (863)
Q Consensus 502 ~~~l~l~~~~~~~l-~~~---~-~~~Lr~L~l~~~~l~~l----~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L 571 (863)
++.+.+.+|.+... |.. . +++|++|++++|.+... +...+..+++|++|+|++| .+..+ |..++++++|
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCC
Confidence 44555555544322 211 1 45555555555544431 1122234555555555555 33322 2345555555
Q ss_pred ceeeccCCCccc---cchh--hhcccCccEEecCCCCCccccchh---hhcCCCCCceeeccCcchhhhccCCCCccccc
Q 038405 572 RCLNLSNTSIEE---LPSE--IMYLKNLKILLLDGMRHFHLIPAR---VFSSLLSLKVFSLFSTELIELHRMPPNQTTIL 643 (863)
Q Consensus 572 ~~L~L~~~~i~~---lP~~--i~~L~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l 643 (863)
++|++++|.+.. +|.. ++++++|++|++++|. +..+|.. .++.+++|++|++++|.+....+..
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~------- 243 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS------- 243 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-------
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-------
Confidence 555555555432 2221 2455555555555554 3333321 2344555555555554433221110
Q ss_pred hhhhhhcccceeeEEeecCchhhhhhhccccccccccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCC
Q 038405 644 DELECLGNQIYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTN 723 (863)
Q Consensus 644 ~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 723 (863)
+.. ...+++|+.|++++|.....+. .-.++|++|++++|.+++++. +..
T Consensus 244 ----------------~~~----------~~~~~~L~~L~Ls~N~l~~lp~-~~~~~L~~L~Ls~N~l~~~~~----~~~ 292 (310)
T 4glp_A 244 ----------------APR----------CMWSSALNSLNLSFAGLEQVPK-GLPAKLRVLDLSSNRLNRAPQ----PDE 292 (310)
T ss_dssp ----------------CSS----------CCCCTTCCCEECCSSCCCSCCS-CCCSCCSCEECCSCCCCSCCC----TTS
T ss_pred ----------------HHh----------ccCcCcCCEEECCCCCCCchhh-hhcCCCCEEECCCCcCCCCch----hhh
Confidence 000 0112578889998888774433 113799999999999887633 346
Q ss_pred CCCCCEEEEecCCC
Q 038405 724 FHNLHHLSIRVCPV 737 (863)
Q Consensus 724 l~~L~~L~L~~~~~ 737 (863)
+++|+.|++++|+.
T Consensus 293 l~~L~~L~L~~N~l 306 (310)
T 4glp_A 293 LPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCCSCEECSSTTT
T ss_pred CCCccEEECcCCCC
Confidence 89999999999964
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=5e-14 Score=145.58 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=49.9
Q ss_pred CccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEecCC
Q 038405 522 HLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLLDG 601 (863)
Q Consensus 522 ~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~ 601 (863)
++..+.+.++.+..++. +..+++|++|++++| .+..+| .++.+++|++|++++|.|..+|. +.++++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEEC--HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCcccccc--hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 34444444444444442 445555555555555 455555 35555555555555555555554 55555555555555
Q ss_pred CCCccccchhhhcCCCCCceeeccCc
Q 038405 602 MRHFHLIPARVFSSLLSLKVFSLFST 627 (863)
Q Consensus 602 ~~~l~~lp~~~i~~L~~L~~L~l~~~ 627 (863)
|. +..+|. +.. ++|++|++++|
T Consensus 95 N~-l~~l~~--~~~-~~L~~L~L~~N 116 (263)
T 1xeu_A 95 NR-LKNLNG--IPS-ACLSRLFLDNN 116 (263)
T ss_dssp SC-CSCCTT--CCC-SSCCEEECCSS
T ss_pred Cc-cCCcCc--ccc-CcccEEEccCC
Confidence 54 444443 222 55555555544
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=3.4e-13 Score=153.72 Aligned_cols=179 Identities=20% Similarity=0.248 Sum_probs=135.4
Q ss_pred cceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCC
Q 038405 501 EDFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTS 580 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~ 580 (863)
+++.+++.++.+..+|...+++|++|++++|.+..+| ..+++|++|+|++| .+..+|. +++ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCc
Confidence 5778999999998888877899999999999999888 34789999999999 7888888 765 99999999999
Q ss_pred ccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEee
Q 038405 581 IEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITL 660 (863)
Q Consensus 581 i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~ 660 (863)
|+.+|. .+++|++|++++|. +..+|. .+++|++|++++|.+..++. ..
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~---------------------- 179 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTFLPE--LP---------------------- 179 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCCC--CC----------------------
T ss_pred CCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCCcch--hh----------------------
Confidence 999998 68999999999998 666876 57899999999876543221 10
Q ss_pred cCchhhhhhhccccccccccEEEecccCCcccccccccCCc-------ceeEeccCcccccCCCCCCCCCCCCCCEEEEe
Q 038405 661 GSASALFKINFSWKLCSCIKRLTIMHNLDSHSIDLRNMMHL-------ETLNIVECSLERVDPTFNGWTNFHNLHHLSIR 733 (863)
Q Consensus 661 ~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~ 733 (863)
++|+.|++++|.....+.+.+ +| +.|++++|.++.++. .+..+++|+.|+|+
T Consensus 180 ----------------~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~---~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 180 ----------------ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRITHIPE---NILSLDPTCTIILE 238 (571)
T ss_dssp ----------------TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCCCCCG---GGGGSCTTEEEECC
T ss_pred ----------------CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcceecCH---HHhcCCCCCEEEee
Confidence 245566666665543333222 45 888888888776654 23457888888888
Q ss_pred cCCCCCC
Q 038405 734 VCPVIRD 740 (863)
Q Consensus 734 ~~~~~~~ 740 (863)
+|+....
T Consensus 239 ~N~l~~~ 245 (571)
T 3cvr_A 239 DNPLSSR 245 (571)
T ss_dssp SSSCCHH
T ss_pred CCcCCCc
Confidence 8865443
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=136.50 Aligned_cols=128 Identities=16% Similarity=0.299 Sum_probs=90.7
Q ss_pred EEEeccCCccccCCCCCCCccEEEeecccccccc-hhhhhcCCCccEEeccCCcCccccch-hhhcccccceeeccCCCc
Q 038405 504 RLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFP-HRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLNLSNTSI 581 (863)
Q Consensus 504 ~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~-~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i 581 (863)
.+.+.++.+..+|....+.+++|++++|.+..++ ...|..+++|++|+|++| .+..+|. .++++++|++|+|++|.|
T Consensus 15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCcc
Confidence 5677777777777666667777888877777763 355677778888888777 5655544 677777888888888877
Q ss_pred cccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhc
Q 038405 582 EELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELH 633 (863)
Q Consensus 582 ~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 633 (863)
..+|.. +..+++|++|++++|. +..+++..+.++++|++|++++|.+..+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred CccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 777654 7777788888887776 55554444777778888887777665443
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=3.9e-13 Score=132.46 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=69.0
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccc-cchhhhcccCccEEe
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEE-LPSEIMYLKNLKILL 598 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~-lP~~i~~L~~L~~L~ 598 (863)
+++|++|++++|.+..+|. +..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .|..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTG--IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChHH--HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 5667777777776666662 667777777777777 555554 46677777777777777764 566677777777777
Q ss_pred cCCCCCccccchhhhcCCCCCceeeccCc
Q 038405 599 LDGMRHFHLIPARVFSSLLSLKVFSLFST 627 (863)
Q Consensus 599 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 627 (863)
+++|......|.. ++++++|++|++++|
T Consensus 119 Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 119 ISHSAHDDSILTK-INTLPKVNSIDLSYN 146 (197)
T ss_dssp CCSSBCBGGGHHH-HTTCSSCCEEECCSC
T ss_pred ecCCccCcHhHHH-HhhCCCCCEEEccCC
Confidence 7777633334444 667777777777655
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=7.6e-14 Score=163.13 Aligned_cols=295 Identities=14% Similarity=0.134 Sum_probs=144.2
Q ss_pred ccceEEEeccCCccc-----cCCCC--CCCccEEEeecccccccch----hhhhcCCCccEEeccCCcCccccchhhhcc
Q 038405 500 REDFRLSLWGSSIEY-----LPETP--CPHLQTLLVRFTVLEIFPH----RFFESMGALKVLDLSYNLDLTQLPAEMGAL 568 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~-----l~~~~--~~~Lr~L~l~~~~l~~l~~----~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L 568 (863)
+.++.+.+.++.+.. ++... +++|++|++++|. ..+.. ..+..+++|++|++++|..+..+|..+..+
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 356666666555332 22222 5677777777664 11221 223445777777777765555566666666
Q ss_pred cccceeeccCC-------------------------------CccccchhhhcccCccEEecCCCCCccccchhhhcCCC
Q 038405 569 INLRCLNLSNT-------------------------------SIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLL 617 (863)
Q Consensus 569 ~~L~~L~L~~~-------------------------------~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~ 617 (863)
++|++|+++.+ ....+|..+..+++|++|++++|.........++.+++
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence 66666664433 11233444445667777777776622111222345667
Q ss_pred CCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEee---------cCchhhhhhhccccccccccEEEecccC
Q 038405 618 SLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITL---------GSASALFKINFSWKLCSCIKRLTIMHNL 688 (863)
Q Consensus 618 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~---------~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 688 (863)
+|++|++.+| +. ...+..+.....+|+.+.+.- ..... ..+......+++|+.|.+..+.
T Consensus 315 ~L~~L~l~~~-~~---------~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~-~~l~~l~~~~~~L~~L~~~~~~ 383 (594)
T 2p1m_B 315 KLQRLWVLDY-IE---------DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE-QGLVSVSMGCPKLESVLYFCRQ 383 (594)
T ss_dssp TCCEEEEEGG-GH---------HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH-HHHHHHHHHCTTCCEEEEEESC
T ss_pred CcCEEeCcCc-cC---------HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH-HHHHHHHHhchhHHHHHHhcCC
Confidence 7777777655 11 111112211111444444411 01111 0111111224567777555444
Q ss_pred Cccccc--c-cccCCcceeEec--c---Cc-ccccCCCC---CCCCCCCCCCEEEEecCCCCCC--Cccccc-CCCcceE
Q 038405 689 DSHSID--L-RNMMHLETLNIV--E---CS-LERVDPTF---NGWTNFHNLHHLSIRVCPVIRD--LTWIRE-APNLQFL 753 (863)
Q Consensus 689 ~~~~~~--l-~~~~~L~~L~l~--~---~~-l~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~--l~~l~~-l~~L~~L 753 (863)
...... + ..+++|++|+++ + |. ++..+... .....+++|+.|++++ .+.. ++.+.. +++|+.|
T Consensus 384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEML 461 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEE
T ss_pred cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEe
Confidence 332211 2 246777777777 2 22 33221100 0022456777777755 2221 123333 7777777
Q ss_pred eeccCcchhhhhcccCCccccccCccCcccceecccccccccccc--cCccCCCCccEEeeccCCC
Q 038405 754 SLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKRIC--HGTMPFPSLQNVSVTNCPN 817 (863)
Q Consensus 754 ~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~--~~~~~~~~L~~L~i~~C~~ 817 (863)
+|++|......+. .....+++|+.|+|++|+. .... .....+++|+.|++++|+.
T Consensus 462 ~L~~~~i~~~~~~--------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 462 SVAFAGDSDLGMH--------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEESCCSSHHHHH--------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred eccCCCCcHHHHH--------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 7777763222111 1113477888888887764 2211 1223467888888888864
No 114
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.44 E-value=5.8e-13 Score=116.38 Aligned_cols=82 Identities=7% Similarity=0.137 Sum_probs=71.3
Q ss_pred chhh-hhhHHHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccHHHHHHHHHHHHHHHHHH
Q 038405 6 PILD-IFTRLWDCSAAKSSYIRHLEDNLKSLSEKKSQIEDLNEDIKRRVETEEQQQQ-RKRKKVVEGWLNAVESEIKEVD 83 (863)
Q Consensus 6 ~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~-~~~~~~~~~wl~~~~~~~~~~~ 83 (863)
|+++ +++||.+++.+|+..+.+++++++.|++||+.|+++|.+ |+.+ . ...+++++.|+++||+++||+|
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~-~~~~~d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEV-PREQLDSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTS-CGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHh-ccccCCHHHHHHHHHHHHHHHHHH
Confidence 4677 999999999999999999999999999999999999664 4443 1 2347899999999999999999
Q ss_pred HHHHhhhhhhhh
Q 038405 84 GILQKGCQEIEK 95 (863)
Q Consensus 84 d~ld~~~~~~~~ 95 (863)
|++|+|.++...
T Consensus 73 D~iD~f~~~~~~ 84 (115)
T 3qfl_A 73 DVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999988753
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=2.2e-13 Score=140.69 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=102.1
Q ss_pred ccceEEEeccCCccccCCCC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccC
Q 038405 500 REDFRLSLWGSSIEYLPETP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSN 578 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 578 (863)
.++.++.+..+.+..++... +++|++|++++|.+..++. +..+++|++|++++| .+..+|. ++++++|++|++++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCC
Confidence 34556667777777777444 8999999999999998883 889999999999999 8888887 99999999999999
Q ss_pred CCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcch
Q 038405 579 TSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 579 ~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 629 (863)
|.++.+|.... ++|++|++++|. +..+|. ++++++|++|++++|.+
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKL 140 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCC
T ss_pred CccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcC
Confidence 99999986444 999999999997 666663 88999999999987653
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=4.4e-13 Score=135.44 Aligned_cols=123 Identities=24% Similarity=0.283 Sum_probs=67.2
Q ss_pred EEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceeeccCCCccc
Q 038405 505 LSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLNLSNTSIEE 583 (863)
Q Consensus 505 l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~~i~~ 583 (863)
+...++.+..+|....++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. +..+++|++|+|++|.|+.
T Consensus 24 v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTV 102 (229)
T ss_dssp EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred eEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCc
Confidence 444455555555544555556666555555554444555555666666555 44444432 3555556666666555555
Q ss_pred cchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchh
Q 038405 584 LPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 584 lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+.
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCC
T ss_pred cChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCC
Confidence 5443 3555556666665554 4455554 455555666655555443
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=6.1e-13 Score=134.38 Aligned_cols=128 Identities=31% Similarity=0.395 Sum_probs=116.1
Q ss_pred ccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceee
Q 038405 500 REDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLN 575 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~ 575 (863)
..++.+.+.+|.+..++... +++|++|++++|.+..+|...|..+++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 57899999999999885432 899999999999999999988999999999999999 77777664 68999999999
Q ss_pred ccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcch
Q 038405 576 LSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 576 L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 629 (863)
|++|.|..+|..+..+++|++|++++|. +..+|...+..+++|++|++.+|.+
T Consensus 119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 119 MCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 9999999999999999999999999997 7788877799999999999998764
No 118
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.41 E-value=6.5e-14 Score=163.72 Aligned_cols=126 Identities=15% Similarity=0.035 Sum_probs=81.0
Q ss_pred ccceEEEeccCCccccC--CC--CCCCccEEEeecc-ccccc-chhhhhcCCCccEEeccCCcCccc-----cchhhhcc
Q 038405 500 REDFRLSLWGSSIEYLP--ET--PCPHLQTLLVRFT-VLEIF-PHRFFESMGALKVLDLSYNLDLTQ-----LPAEMGAL 568 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~--~~--~~~~Lr~L~l~~~-~l~~l-~~~~~~~l~~L~~L~Ls~~~~i~~-----lp~~i~~L 568 (863)
+.++++.+.++.+.... .. .+++|++|.+.+| .+... ...++..+++|++|+|++|. +.. ++.....+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcC
Confidence 46777888776654321 11 1678888888887 44331 22335578888888888883 332 33333466
Q ss_pred cccceeeccCCC--cc--ccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCc
Q 038405 569 INLRCLNLSNTS--IE--ELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFST 627 (863)
Q Consensus 569 ~~L~~L~L~~~~--i~--~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 627 (863)
++|++|++++|. +. .++.-+.++++|++|++++|..+..+|.. +.++++|++|++..+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence 788888888875 22 23333456788888888888656666654 778888888886543
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=6.1e-13 Score=144.56 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=107.7
Q ss_pred eEEEeccCCccccCCCCCCCccEEEeecccccccchhhhh-cCCCccEEeccCCcCccccc-hhhhcccccceeeccCCC
Q 038405 503 FRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFE-SMGALKVLDLSYNLDLTQLP-AEMGALINLRCLNLSNTS 580 (863)
Q Consensus 503 ~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~-~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~ 580 (863)
+.+.+.++.+..+|....+.++.|++++|.+..++...|. .+++|++|+|++| .+..+| ..+.++++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc
Confidence 4677888888888887788899999999999999888777 8999999999999 677666 468899999999999999
Q ss_pred ccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhh
Q 038405 581 IEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIE 631 (863)
Q Consensus 581 i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 631 (863)
|..+|.. +..+++|++|+|++|. +..++...|.++++|++|++++|.+..
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCe
Confidence 9988764 8899999999999998 666655568999999999999876543
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=2e-12 Score=128.54 Aligned_cols=145 Identities=26% Similarity=0.299 Sum_probs=122.1
Q ss_pred cccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhccccccee
Q 038405 499 WREDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCL 574 (863)
Q Consensus 499 ~~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L 574 (863)
...++.+.+.++.+..++... +++|++|++++|.+..++...|..+++|++|++++| .+..+|.. ++++++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 347899999999999887743 899999999999999999988899999999999999 77777764 6899999999
Q ss_pred eccCCCccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhccc
Q 038405 575 NLSNTSIEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQ 652 (863)
Q Consensus 575 ~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~ 652 (863)
++++|.|..+|.. +.++++|++|++++|. +..+|...+.++++|++|++.+|.+.. ....++.|....|.
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINK 176 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHH
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHh
Confidence 9999999999876 7899999999999997 677887778999999999999885431 23455555554433
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=8.3e-13 Score=130.07 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=110.1
Q ss_pred cccccceEEEeccCCccccCCCC-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCcc-ccchhhhccccccee
Q 038405 497 DSWREDFRLSLWGSSIEYLPETP-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLT-QLPAEMGALINLRCL 574 (863)
Q Consensus 497 ~~~~~~~~l~l~~~~~~~l~~~~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~~L~~L~~L 574 (863)
..+..++.+.+.++.+..++... +++|++|++++|.+..++. +..+++|++|++++| .+. ..|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence 34567889999999999888544 9999999999998777653 788999999999999 555 478889999999999
Q ss_pred eccCCCccc-cchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchh
Q 038405 575 NLSNTSIEE-LPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 575 ~L~~~~i~~-lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
++++|.+.. .|..++.+++|++|++++|..+..+| . +.++++|++|++++|.+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~-l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P-LKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G-GGGCSSCCEEECTTBCCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h-hcCCCCCCEEECCCCCCc
Confidence 999999985 67789999999999999997677777 3 889999999999987653
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=3.1e-12 Score=128.28 Aligned_cols=128 Identities=22% Similarity=0.304 Sum_probs=114.9
Q ss_pred ccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceee
Q 038405 500 REDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLN 575 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~ 575 (863)
..++.+.+.+|.+..++... +++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. +.++++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 57899999999999988643 899999999999999997777999999999999999 78888875 58899999999
Q ss_pred ccCCCccccc-hhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcch
Q 038405 576 LSNTSIEELP-SEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 576 L~~~~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 629 (863)
|++|.|..++ ..+..+++|++|++++|. +..+|.+.+..+++|++|++.+|.+
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999999884 569999999999999998 7778777799999999999998865
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=1.4e-12 Score=124.85 Aligned_cols=129 Identities=23% Similarity=0.159 Sum_probs=111.0
Q ss_pred ccceEEEeccCCcc--ccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccc-cchhhhccccccee
Q 038405 500 REDFRLSLWGSSIE--YLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQ-LPAEMGALINLRCL 574 (863)
Q Consensus 500 ~~~~~l~l~~~~~~--~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~~L~~L~~L 574 (863)
..++.+.+.++.+. .+|... +++|++|++++|.+..+ ..+..+++|++|++++| .+.. +|..++++++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence 47889999999988 788774 89999999999988887 34889999999999999 6665 88888889999999
Q ss_pred eccCCCccccc--hhhhcccCccEEecCCCCCccccch---hhhcCCCCCceeeccCcchhhh
Q 038405 575 NLSNTSIEELP--SEIMYLKNLKILLLDGMRHFHLIPA---RVFSSLLSLKVFSLFSTELIEL 632 (863)
Q Consensus 575 ~L~~~~i~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~~~~~~~~ 632 (863)
++++|.|+.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|++.+|...+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999999987 679999999999999997 667776 4589999999999998765443
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=1.4e-12 Score=141.82 Aligned_cols=103 Identities=29% Similarity=0.388 Sum_probs=83.5
Q ss_pred ccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hh-cccccceeeccCCCccccch-hhhcccCccEEec
Q 038405 523 LQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MG-ALINLRCLNLSNTSIEELPS-EIMYLKNLKILLL 599 (863)
Q Consensus 523 Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~-~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l 599 (863)
-++++++++.+..+|..+ ...+++|+|++| .+..+|.. +. ++.+|++|+|++|.|..+|. .+.++++|++|+|
T Consensus 20 ~~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL---PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSSCCSSC---CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccC---CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 367888888888888753 356899999999 77777654 44 88999999999999998875 4889999999999
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchh
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
++|. +..+|...|.++++|++|++++|.+.
T Consensus 96 s~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 96 SSNH-LHTLDEFLFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp CSSC-CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCc-CCcCCHHHhCCCcCCCEEECCCCccc
Confidence 9987 77777777888999999999876543
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=5e-14 Score=161.54 Aligned_cols=102 Identities=20% Similarity=0.185 Sum_probs=67.4
Q ss_pred ccccEEEecccCCccccc-ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCC--CcccccCCCcceE
Q 038405 677 SCIKRLTIMHNLDSHSID-LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRD--LTWIREAPNLQFL 753 (863)
Q Consensus 677 ~~L~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L 753 (863)
++|+.|++++|.....+. +..+++|+.|++++|.+++++ .+..+++|+.|+|++|..... +..++.+++|+.|
T Consensus 463 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp----~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD----GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG----GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc----ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 356666666665553332 677788888888888877764 345788888888888866555 4567888888888
Q ss_pred eeccCcchhhhhcccCCccccccCccCcccceecc
Q 038405 754 SLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDL 788 (863)
Q Consensus 754 ~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L 788 (863)
+|++|.. ..+|... ......+|+|+.|++
T Consensus 539 ~L~~N~l-~~~~~~~-----~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSL-CQEEGIQ-----ERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGG-GGSSSCT-----THHHHHCTTCSEEEC
T ss_pred EecCCcC-CCCccHH-----HHHHHHCcccCccCC
Confidence 8888874 3333211 112234778887753
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=2.1e-12 Score=120.84 Aligned_cols=122 Identities=26% Similarity=0.211 Sum_probs=101.8
Q ss_pred ccceEEEeccCCcc--ccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccc-cchhhhccccccee
Q 038405 500 REDFRLSLWGSSIE--YLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQ-LPAEMGALINLRCL 574 (863)
Q Consensus 500 ~~~~~l~l~~~~~~--~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~~L~~L~~L 574 (863)
..++.+.+.++.+. .+|... +++|++|++++|.+..+ ..+..+++|++|++++| .+.. +|..++.+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence 46888999998887 677664 88999999999988877 34788999999999999 5665 88888889999999
Q ss_pred eccCCCccccc--hhhhcccCccEEecCCCCCccccch---hhhcCCCCCceeecc
Q 038405 575 NLSNTSIEELP--SEIMYLKNLKILLLDGMRHFHLIPA---RVFSSLLSLKVFSLF 625 (863)
Q Consensus 575 ~L~~~~i~~lP--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~ 625 (863)
++++|.+..+| ..++.+++|++|++++|. +..+|. ..++.+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 99999998875 778999999999999987 666665 458889999999875
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=6.5e-14 Score=160.60 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=90.7
Q ss_pred cccEEEecccCCcccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCCcccccCCCcceEeecc
Q 038405 678 CIKRLTIMHNLDSHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDLTWIREAPNLQFLSLVN 757 (863)
Q Consensus 678 ~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 757 (863)
.|+.|++++|.....+.+..+++|+.|++++|.++.++. .+..+++|+.|+|++|.. +.+|.++.+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~Ls~N~l-~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP---ALAALRCLEVLQASDNAL-ENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCG---GGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccch---hhhcCCCCCEEECCCCCC-CCCcccCCCCCCcEEECCC
Confidence 488899999988776668999999999999999887654 466899999999999964 4577899999999999999
Q ss_pred Ccchhhh-hcccCCccccccCccCcccceecccccccccccccCcc----CCCCccEEe
Q 038405 758 CQALSEI-IESAGSSEVAESHNYFAYLMVIDLDSLPSLKRICHGTM----PFPSLQNVS 811 (863)
Q Consensus 758 ~~~l~~i-~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~----~~~~L~~L~ 811 (863)
|...... | .....+++|+.|+|+++ .++.++.... .+|+|+.|+
T Consensus 518 N~l~~~~~p---------~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAI---------QPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTT---------GGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCc---------HHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 8743221 3 24567899999999885 3555443221 256666553
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.34 E-value=4.8e-12 Score=123.85 Aligned_cols=124 Identities=21% Similarity=0.324 Sum_probs=110.5
Q ss_pred eEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhcccccceeeccCCCc
Q 038405 503 FRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLNLSNTSI 581 (863)
Q Consensus 503 ~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i 581 (863)
+.+.+.++.+..+|....++|++|++++|.+..+|. .|..+++|++|+|++| .+..++ ..|.++++|++|+|++|.|
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCcc
Confidence 467888889999998778899999999999999985 5899999999999999 677665 5689999999999999999
Q ss_pred cccch-hhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcch
Q 038405 582 EELPS-EIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 582 ~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 629 (863)
+.+|. .+..+++|++|++++|. +..+|.+.+..+++|++|++.+|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 99976 58999999999999998 7788887799999999999998764
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=3.8e-12 Score=127.60 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=112.1
Q ss_pred ccceEEEeccCCccccCCC---C-CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhccccccee
Q 038405 500 REDFRLSLWGSSIEYLPET---P-CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCL 574 (863)
Q Consensus 500 ~~~~~l~l~~~~~~~l~~~---~-~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L 574 (863)
..++.+.+.+|.+..++.. . +++|++|++++|.+..+++..|..+++|++|+|++| .+..+|. .++++++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEE
Confidence 3567999999999988532 2 899999999999999999888999999999999999 6666655 58999999999
Q ss_pred eccCCCcccc-chhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchh
Q 038405 575 NLSNTSIEEL-PSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 575 ~L~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
+|++|.|..+ |..+..+++|++|++++|. +..+++..+..+++|++|++.+|.+.
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999988 5679999999999999998 66665555999999999999988653
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=3e-12 Score=125.40 Aligned_cols=126 Identities=23% Similarity=0.295 Sum_probs=109.9
Q ss_pred eEEEeccCCccccCCCCCCCccEEEeecccccccchh-hhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCC
Q 038405 503 FRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHR-FFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTS 580 (863)
Q Consensus 503 ~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~-~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~ 580 (863)
+.+.+.++.+..+|....+++++|++++|.+..++.. +|..+++|++|+|++| .+..+ |..++++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCc
Confidence 5788889999999987778999999999999988864 5899999999999999 66655 7889999999999999999
Q ss_pred ccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchh
Q 038405 581 IEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 581 i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
|+.+|.. +..+++|++|++++|. +..+++..+..+++|++|++.+|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9998765 8899999999999998 55554445899999999999988653
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=4.9e-12 Score=122.14 Aligned_cols=125 Identities=25% Similarity=0.365 Sum_probs=111.5
Q ss_pred eEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceeeccCCCc
Q 038405 503 FRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLNLSNTSI 581 (863)
Q Consensus 503 ~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~~i 581 (863)
+.+.+.++.+..+|....++|++|++++|.+..++...|..+++|++|++++| .+..+|.. ++++++|++|++++|.|
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCc
Confidence 46778888888888777899999999999999999888899999999999999 77777764 68999999999999999
Q ss_pred cccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcch
Q 038405 582 EELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 582 ~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 629 (863)
+.+|.. +.++++|++|++++|. +..+|...+..+++|++|++.+|.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 999876 6899999999999997 7788888778999999999998864
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=5.6e-11 Score=130.46 Aligned_cols=282 Identities=12% Similarity=-0.001 Sum_probs=171.8
Q ss_pred ccccchhhHHHHHHHhhcc----CCceEEEEEcCCCChHHHHhhhhhhccccc----cCC-CCEEEEEEeCCCC-CHHHH
Q 038405 153 EKTVGADSKLDEVWGCIED----QSEQTIGLYGMGGVGKITLLKKPNNKFLDV----NHC-FDLVIFVAVSKEG-NLEKI 222 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~-F~~~~wv~~~~~~-~~~~~ 222 (863)
+.++||+++++++.+++.. ...+.+.|+|++|+||||||+.+++..... ... ....+|++..... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999987743 446789999999999999999999875211 011 3456788877766 78888
Q ss_pred HHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccccc--cccc-cccCCCCCCCeEEEEeecchhhh--
Q 038405 223 QEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERLD--LSKT-GVSLSDCQNGSKIVFTTRSEEVC-- 297 (863)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~-~~~l~~~~~gs~iivTTr~~~v~-- 297 (863)
...++..+..........+.......+.+.++.++.+|||||++.... +... ...+.....+..||+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 888888772221111233345667777778877767999999986432 1122 11221111678899999875321
Q ss_pred --------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcC---CChH-HHHHHHHHH--h---CCC
Q 038405 298 --------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECK---GLPL-ALITIARAM--S---SRR 354 (863)
Q Consensus 298 --------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~l--~---~~~ 354 (863)
+.+++.++..++|...+.... ....-..+..+.+++.++ |.|. |+..+-... . ..-
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 788999999999998753100 001112456778888887 8876 444433332 2 124
Q ss_pred ChhhHHHHHHHHhcCCCccCCCCccccchhhcccCCCChhhHhHHhhhhcCCCCCCccchHHHHHHHHhcCCCCCccchh
Q 038405 355 SPREWQYVIDELQRNPSRFAGMGNLVFPILRFSYDNLTDDTLKTCFLYCSLFPEENNIRKDELIDLWIGEGFLSDFRSIT 434 (863)
Q Consensus 355 ~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wiaeg~i~~~~~~~ 434 (863)
+.+.+..+++.... ..+.-+++.|+++ .+..+..++....+..+. +.....--..| ...
T Consensus 259 ~~~~v~~~~~~~~~-------------~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~----- 317 (384)
T 2qby_B 259 RKEHVDKAIVDYEQ-------------ERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP----- 317 (384)
T ss_dssp CHHHHHHHHHHHHH-------------HHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC-----
T ss_pred CHHHHHHHHHHHhc-------------chHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC-----
Confidence 56777777664421 2344566778875 666665555511101111 11111111122 111
Q ss_pred HHhhhHHHHHHHHHHhcccccC
Q 038405 435 TARNQGEYIIGSLKLACLLESG 456 (863)
Q Consensus 435 ~~~~~~~~~~~~L~~~~ll~~~ 456 (863)
........++..|...++++..
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 1224556789999999999863
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=3.3e-12 Score=123.26 Aligned_cols=128 Identities=20% Similarity=0.184 Sum_probs=106.2
Q ss_pred cccceEEEeccCCccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhh-hcccccceee
Q 038405 499 WREDFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEM-GALINLRCLN 575 (863)
Q Consensus 499 ~~~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~L~~L~~L~ 575 (863)
...++.+.+.+|.+..++... +++|++|++++|.+..++ .+..+++|++|++++| .+..+|..+ +.+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEE
Confidence 347888999999988886654 459999999999888873 3788999999999999 777887554 8899999999
Q ss_pred ccCCCccccch--hhhcccCccEEecCCCCCccccchh---hhcCCCCCceeeccCcchh
Q 038405 576 LSNTSIEELPS--EIMYLKNLKILLLDGMRHFHLIPAR---VFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 576 L~~~~i~~lP~--~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l~~~~~~ 630 (863)
+++|.|..+|. .+..+++|++|++++|. +..+|.. ++..+++|++|++..|...
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999987 78899999999999997 6667764 5788999999999877643
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=4e-12 Score=150.50 Aligned_cols=88 Identities=31% Similarity=0.357 Sum_probs=44.4
Q ss_pred hhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCC
Q 038405 539 RFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLS 618 (863)
Q Consensus 539 ~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~ 618 (863)
..+..++.|++|+|++| .+..+|..+.++++|++|+|++|.|+.+|..+++|++|++|+|++|. +..+|.. |++|++
T Consensus 218 ~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTT
T ss_pred hhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCC
Confidence 33445555555555555 44455555555555555555555555555555555555555555554 3345544 455555
Q ss_pred CceeeccCcch
Q 038405 619 LKVFSLFSTEL 629 (863)
Q Consensus 619 L~~L~l~~~~~ 629 (863)
|++|++++|.+
T Consensus 295 L~~L~L~~N~l 305 (727)
T 4b8c_D 295 LKYFYFFDNMV 305 (727)
T ss_dssp CSEEECCSSCC
T ss_pred CCEEECCCCCC
Confidence 55555555443
No 135
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.24 E-value=2.3e-10 Score=125.62 Aligned_cols=280 Identities=14% Similarity=0.084 Sum_probs=171.0
Q ss_pred ccccchhhHHHHHHHhhcc----CCceEEEEEcCCCChHHHHhhhhhhcccccc---CCCCEEEEEEeCCCCCHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIED----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVN---HCFDLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~~~~~~~~~~~~~ 225 (863)
+.++||+++++++.+++.. ...+.+.|+|++|+||||+|+.+++...... +.-...+|++.....+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5789999999999998843 4567899999999999999999998762110 11235678888888888899999
Q ss_pred HHHHcCCCcccccccChhhHHHHHHHHhc--cCcEEEEEcccccccc----ccccc---ccCCCC--CCCeEEEEeecch
Q 038405 226 IRKKLDISDYIWNMKGEYDRAVEILISLR--RKKFVLLLDDVWERLD----LSKTG---VSLSDC--QNGSKIVFTTRSE 294 (863)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~----~~~~~---~~l~~~--~~gs~iivTTr~~ 294 (863)
++.+++..... ...+..+....+.+.+. +++.+||||+++.... .+.+. ...... ..+..+|.||+..
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99988754321 22334555666666663 4688999999986432 12221 111111 3456777777765
Q ss_pred hhh-----------------cccCCHHHHHHHHhHhhCc--cccCCCCChHHHHHHHHHHcC---CChH-HHHHHHHHHh
Q 038405 295 EVC-----------------VECLSPEAALDLFRYKVGE--DVFNSHPEIPTLAQAVVGECK---GLPL-ALITIARAMS 351 (863)
Q Consensus 295 ~v~-----------------l~~L~~~~a~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~l~ 351 (863)
... +.+++.++..+++...+.. .....+ .+..+.+++.++ |.|- |+..+.....
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 221 7889999999999887532 111112 345677888887 9993 3333332221
Q ss_pred -----C--CCChhhHHHHHHHHhcCCCccCCCCccccchhhcccCCCChhhHhHHhhhhc-CCCCCCccchHHHHHHHH-
Q 038405 352 -----S--RRSPREWQYVIDELQRNPSRFAGMGNLVFPILRFSYDNLTDDTLKTCFLYCS-LFPEENNIRKDELIDLWI- 422 (863)
Q Consensus 352 -----~--~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~-~Fp~~~~i~~~~Li~~wi- 422 (863)
+ .-+.+.+..+++.... ..+.-++..|+.+ .+..+..++ ++.....+....+.+...
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 1 1355666666654321 2244456778875 565555444 343223455554433321
Q ss_pred ---hcCCCCCccchhHHhhhHHHHHHHHHHhcccccC
Q 038405 423 ---GEGFLSDFRSITTARNQGEYIIGSLKLACLLESG 456 (863)
Q Consensus 423 ---aeg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 456 (863)
..| ... ........+++.|...++++..
T Consensus 321 ~~~~~~-~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLG-LEH-----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTT-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcC-CCC-----CCHHHHHHHHHHHHhCCCeEEE
Confidence 122 111 1234566789999999999874
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.24 E-value=6.5e-12 Score=120.15 Aligned_cols=108 Identities=23% Similarity=0.227 Sum_probs=94.4
Q ss_pred CCCccEEEeeccccc--ccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccc-cchhhhcccCccE
Q 038405 520 CPHLQTLLVRFTVLE--IFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEE-LPSEIMYLKNLKI 596 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~--~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~-lP~~i~~L~~L~~ 596 (863)
.++|++|++++|.+. .+|.. +..+++|++|++++| .+..+ ..++.+++|++|++++|.+.. +|..+.++++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 688999999999988 78765 789999999999999 67777 678999999999999999998 7887888999999
Q ss_pred EecCCCCCccccch-hhhcCCCCCceeeccCcchhh
Q 038405 597 LLLDGMRHFHLIPA-RVFSSLLSLKVFSLFSTELIE 631 (863)
Q Consensus 597 L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~ 631 (863)
|++++|. +..+|. ..+..+++|++|++++|.+..
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 9999997 677653 348999999999999987653
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.20 E-value=7.6e-10 Score=121.61 Aligned_cols=279 Identities=15% Similarity=0.072 Sum_probs=171.3
Q ss_pred ccccchhhHHHHHHHhhcc----CCce--EEEEEcCCCChHHHHhhhhhhccccccCC-CCEEEEEEeCCCCCHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIED----QSEQ--TIGLYGMGGVGKITLLKKPNNKFLDVNHC-FDLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~ 225 (863)
+.++||+++++++.+++.. .... .+.|+|++|+||||||+.+++.. ... -...+|+..+...+...+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5799999999999998854 3334 89999999999999999999876 222 135678887888888899999
Q ss_pred HHHHcCCCcccccccChhhHHHHHHHHhc--cCcEEEEEcccccc--cccccccccCCC-CC---CCeEEEEeecchhhh
Q 038405 226 IRKKLDISDYIWNMKGEYDRAVEILISLR--RKKFVLLLDDVWER--LDLSKTGVSLSD-CQ---NGSKIVFTTRSEEVC 297 (863)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~~~~~l~~-~~---~gs~iivTTr~~~v~ 297 (863)
++..++..... ...+..+....+.+.+. +++.+||||+++.. ..+..+...+.. .. .+..||+||+.....
T Consensus 94 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 99988654311 12344555566666554 56889999999864 222333222211 11 467788888765321
Q ss_pred -----------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHc---------CCChHHHHHHHHH-H
Q 038405 298 -----------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGEC---------KGLPLALITIARA-M 350 (863)
Q Consensus 298 -----------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~glPLai~~~~~~-l 350 (863)
+.+++.++..+++...+.... ....-..+..+.+++.+ +|.|-.+..+... .
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 778999999999988764211 01112256788899999 7887544333222 2
Q ss_pred h-----CC--CChhhHHHHHHHHhcCCCccCCCCccccchhhcccCCCChhhHhHHhhhhcCCC---CCCccchHHHHHH
Q 038405 351 S-----SR--RSPREWQYVIDELQRNPSRFAGMGNLVFPILRFSYDNLTDDTLKTCFLYCSLFP---EENNIRKDELIDL 420 (863)
Q Consensus 351 ~-----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~Fp---~~~~i~~~~Li~~ 420 (863)
. +. -+.+....+..... ...+.-.+..|+.+ .+.++..++.+. .+..+....+...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 1 11 12233333333221 11222334567775 677766666543 2224555555554
Q ss_pred HHh----cCCCCCccchhHHhhhHHHHHHHHHHhcccccC
Q 038405 421 WIG----EGFLSDFRSITTARNQGEYIIGSLKLACLLESG 456 (863)
Q Consensus 421 wia----eg~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 456 (863)
+.. .|.. .. .......++++|...+++...
T Consensus 318 ~~~~~~~~~~~-~~-----~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 318 YKIVCEEYGER-PR-----VHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHTTCC-CC-----CHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHcCCC-CC-----CHHHHHHHHHHHHhCCCeEEe
Confidence 432 1211 11 123456789999999999864
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=4.2e-11 Score=117.13 Aligned_cols=106 Identities=25% Similarity=0.385 Sum_probs=93.6
Q ss_pred cEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccch-hhhcccCccEEecCCC
Q 038405 524 QTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPS-EIMYLKNLKILLLDGM 602 (863)
Q Consensus 524 r~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~ 602 (863)
++++++++.+..+|..+ .++|++|++++| .+..+|..+.++++|++|+|++|.|+.+|. .+.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67888999999999763 368999999999 888999999999999999999999999975 5999999999999999
Q ss_pred CCccccchhhhcCCCCCceeeccCcchhhhcc
Q 038405 603 RHFHLIPARVFSSLLSLKVFSLFSTELIELHR 634 (863)
Q Consensus 603 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 634 (863)
. +..+|...|.++++|++|++++|.+..+..
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred c-cCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 8 777877779999999999999988765543
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=2.1e-11 Score=144.37 Aligned_cols=107 Identities=27% Similarity=0.306 Sum_probs=74.2
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEec
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
+++|++|+|++|.+..+|..++ .+++|++|+|++| .+..+|..|++|++|++|+|++|.|+.+|..+++|++|++|+|
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC
T ss_pred CCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC
Confidence 5667777777776666666643 6777777777777 5667777777777777777777777777777777777777777
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcchh
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
++|. +..+|.. |++|++|++|++++|.+.
T Consensus 301 ~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 301 FDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred CCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence 7765 5566666 677777777777766553
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=1.4e-11 Score=115.25 Aligned_cols=109 Identities=22% Similarity=0.273 Sum_probs=94.2
Q ss_pred CCCccEEEeeccccc--ccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccc-cchhhhcccCccE
Q 038405 520 CPHLQTLLVRFTVLE--IFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEE-LPSEIMYLKNLKI 596 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~--~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~-lP~~i~~L~~L~~ 596 (863)
.++|+.|++++|.+. .+|. .+..+++|++|++++| .+..+ ..++++++|++|++++|.+.. +|..++.+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 578999999999888 7776 4789999999999999 77777 678999999999999999998 8888888999999
Q ss_pred EecCCCCCccccch-hhhcCCCCCceeeccCcchhhh
Q 038405 597 LLLDGMRHFHLIPA-RVFSSLLSLKVFSLFSTELIEL 632 (863)
Q Consensus 597 L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~ 632 (863)
|++++|. +..+|. ..++.+++|++|++++|.+...
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 9999998 666541 3389999999999999876543
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.16 E-value=1.6e-10 Score=126.87 Aligned_cols=281 Identities=11% Similarity=0.092 Sum_probs=165.7
Q ss_pred ccccchhhHHHHHHHhhc----cCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIE----DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRK 228 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (863)
+.++||+++++++.+++. ....+.+.|+|++|+||||||+.+++........-...+|+......+...+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999986 3456789999999999999999999876211110235678887766677788888888
Q ss_pred HcCCCcccccccChhhHHHHHHHHhc--cCcEEEEEccccccc------ccccccccCCC-CCCCeEEEEeecchhhh--
Q 038405 229 KLDISDYIWNMKGEYDRAVEILISLR--RKKFVLLLDDVWERL------DLSKTGVSLSD-CQNGSKIVFTTRSEEVC-- 297 (863)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~l~~-~~~gs~iivTTr~~~v~-- 297 (863)
.++..... ...+..+....+.+.+. +++.+||||+++... .+..+...+.. ...+..+|+||+.....
T Consensus 100 ~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 100 SLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 77654211 12234455566666664 458999999997632 12222111111 23456678888765321
Q ss_pred ---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcC---CChHHHH-HHHHHHh-----C-
Q 038405 298 ---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECK---GLPLALI-TIARAMS-----S- 352 (863)
Q Consensus 298 ---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPLai~-~~~~~l~-----~- 352 (863)
+.+++.++..+++...+.... ....-..+..+.+++.++ |.|..+. .+..... +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~ 257 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKD 257 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 788999999999988653111 011222567777888887 9987443 3332221 1
Q ss_pred -CCChhhHHHHHHHHhcCCCccCCCCccccchhhcccCCCChhhHhHHhhhhcCCCC-C-CccchHHHHHHH--Hh--cC
Q 038405 353 -RRSPREWQYVIDELQRNPSRFAGMGNLVFPILRFSYDNLTDDTLKTCFLYCSLFPE-E-NNIRKDELIDLW--IG--EG 425 (863)
Q Consensus 353 -~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~Fp~-~-~~i~~~~Li~~w--ia--eg 425 (863)
.-+.+.++.+++... ...+.-++..+|.+ .+..+..++...+ + ..+....+.+.. ++ .|
T Consensus 258 ~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 258 TKVKEEYVYMAKEEIE-------------RDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp SSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHh-------------hchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 124455555554332 12344456677774 6666555552211 1 223333332221 11 12
Q ss_pred CCCCccchhHHhhhHHHHHHHHHHhccccc
Q 038405 426 FLSDFRSITTARNQGEYIIGSLKLACLLES 455 (863)
Q Consensus 426 ~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 455 (863)
+... .......+++.|...++++.
T Consensus 324 -~~~~-----~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 -VEAV-----TQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp -CCCC-----CHHHHHHHHHHHHHHTSEEE
T ss_pred -CCCC-----CHHHHHHHHHHHHhCCCEEE
Confidence 1110 12345667899999999975
No 142
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.16 E-value=2.2e-10 Score=116.96 Aligned_cols=187 Identities=13% Similarity=0.138 Sum_probs=112.6
Q ss_pred ccccchhhHHHHHHHhhccCC-ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQS-EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
..++||+..++.+..++.... .+.+.|+|++|+||||+|+.+++... ....+.. ........ ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~------~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA------TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCS------SCCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC------CCCcccHH-HHHHhccCC
Confidence 568999999999999997643 35889999999999999999988762 1111100 00000000 011111100
Q ss_pred CCcccc--cccChhhHHHHHHHHh-----ccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecchhhh-----
Q 038405 232 ISDYIW--NMKGEYDRAVEILISL-----RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEEVC----- 297 (863)
Q Consensus 232 ~~~~~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~v~----- 297 (863)
...... ...........+.+.+ .+++.+||+||++.. ..+..+...+.....+..+|+||+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 000000 0001111122222222 346899999999763 33444444444445678899988765422
Q ss_pred -------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHH
Q 038405 298 -------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAM 350 (863)
Q Consensus 298 -------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 350 (863)
+.+++.++..+++...+...... -..+..+.|++.|+|.|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88899999999998876432211 125678899999999999888766544
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=4.8e-11 Score=116.74 Aligned_cols=106 Identities=20% Similarity=0.258 Sum_probs=91.6
Q ss_pred cEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh--hhcccccceeeccCCCcccc-chhhhcccCccEEecC
Q 038405 524 QTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE--MGALINLRCLNLSNTSIEEL-PSEIMYLKNLKILLLD 600 (863)
Q Consensus 524 r~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~--i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~l~ 600 (863)
++++++++.+..+|..+. .+|++|++++| .+..+|.. ++.+++|++|+|++|.|+.+ |..+.++++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 789999999999998643 38999999999 78888764 89999999999999999988 6779999999999999
Q ss_pred CCCCccccchhhhcCCCCCceeeccCcchhhhcc
Q 038405 601 GMRHFHLIPARVFSSLLSLKVFSLFSTELIELHR 634 (863)
Q Consensus 601 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 634 (863)
+|. +..++...+.++++|++|++++|.+....+
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 87 ENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence 998 677776668999999999999987765443
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=3.5e-11 Score=115.94 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=92.7
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhh-hcccCccEEe
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEI-MYLKNLKILL 598 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i-~~L~~L~~L~ 598 (863)
+++|+.|++++|.+..++. +....++|++|++++| .+..+ ..++.+++|++|++++|.|..+|..+ +.+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 7899999999999988864 3333449999999999 77777 56899999999999999999999775 8999999999
Q ss_pred cCCCCCccccch-hhhcCCCCCceeeccCcchhh
Q 038405 599 LDGMRHFHLIPA-RVFSSLLSLKVFSLFSTELIE 631 (863)
Q Consensus 599 l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~ 631 (863)
+++|. +..+|. ..+..+++|++|++++|.+..
T Consensus 95 L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 95 LTNNS-LVELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp CCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred CCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence 99998 677776 238899999999999987653
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=1.9e-10 Score=123.06 Aligned_cols=215 Identities=13% Similarity=0.062 Sum_probs=117.9
Q ss_pred ccccceeeccCCCccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcch----hhhccCCCCcccc
Q 038405 568 LINLRCLNLSNTSIEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTEL----IELHRMPPNQTTI 642 (863)
Q Consensus 568 L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~----~~~~~~~~~~~~~ 642 (863)
+.+|+.|+|.+ .++.++.. |.+|++|+.|++.+|. +..++..+|..+.++..+....+.. ..+....+..+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~- 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE- 176 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC-
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhcccccccccccccc-
Confidence 77777777777 67777654 6677777777777765 5566666676666666665543211 000000000000
Q ss_pred chhhhhhcccceeeEEeecCchhhhhhh-ccccccccccEEEecccCCccccc--ccccCCcceeEeccCcccccCCCCC
Q 038405 643 LDELECLGNQIYEISITLGSASALFKIN-FSWKLCSCIKRLTIMHNLDSHSID--LRNMMHLETLNIVECSLERVDPTFN 719 (863)
Q Consensus 643 l~~L~~l~n~L~~l~~~~~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~~~~ 719 (863)
.++ ..+.+.....+.... ...-...++..+.+.++-...... ...+++|++|++++|.++.++..
T Consensus 177 ---------~L~-~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~-- 244 (329)
T 3sb4_A 177 ---------PLE-TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF-- 244 (329)
T ss_dssp ---------CCE-EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT--
T ss_pred ---------ccc-eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh--
Confidence 111 011112222222111 111123456666665543222111 22478888888888888877654
Q ss_pred CCCCCCCCCEEEEecCCCCCCC--cccccCCCcc-eEeeccCcchhhhhcccCCccccccCccCcccceecccccccccc
Q 038405 720 GWTNFHNLHHLSIRVCPVIRDL--TWIREAPNLQ-FLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLDSLPSLKR 796 (863)
Q Consensus 720 ~~~~l~~L~~L~L~~~~~~~~l--~~l~~l~~L~-~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 796 (863)
.+..+++|+.|+|.++ ++.+ ..+..+++|+ .|.+.+ .++.|.. ..+.++++|+.+.+.+ .+++.
T Consensus 245 aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~--------~aF~~c~~L~~l~l~~-n~i~~ 311 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF--------GAFMGCDNLRYVLATG-DKITT 311 (329)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT--------TTTTTCTTEEEEEECS-SCCCE
T ss_pred hhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch--------hhhhCCccCCEEEeCC-CccCc
Confidence 5677888888888876 4444 3477888888 888876 3444432 3556778888888754 35666
Q ss_pred cccC-ccCCCCccEE
Q 038405 797 ICHG-TMPFPSLQNV 810 (863)
Q Consensus 797 l~~~-~~~~~~L~~L 810 (863)
+... ...+++|+.+
T Consensus 312 I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 312 LGDELFGNGVPSKLI 326 (329)
T ss_dssp ECTTTTCTTCCCCEE
T ss_pred cchhhhcCCcchhhh
Confidence 6542 2233444444
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=1.6e-10 Score=110.78 Aligned_cols=100 Identities=24% Similarity=0.327 Sum_probs=55.8
Q ss_pred cEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCCccccchh-hhcccCccEEecCC
Q 038405 524 QTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTSIEELPSE-IMYLKNLKILLLDG 601 (863)
Q Consensus 524 r~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~ 601 (863)
+.++++++.+..+|..+ .++|++|+|++| .+..+ |..++++++|++|+|++|.|+.+|.. +.++++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 44555555555555432 255566666666 44444 44555666666666666666666554 35566666666666
Q ss_pred CCCccccchhhhcCCCCCceeeccCcc
Q 038405 602 MRHFHLIPARVFSSLLSLKVFSLFSTE 628 (863)
Q Consensus 602 ~~~l~~lp~~~i~~L~~L~~L~l~~~~ 628 (863)
|. +..+|.+.+.++++|++|++.+|.
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCC
Confidence 55 445555445566666666666554
No 147
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.09 E-value=6.9e-10 Score=111.41 Aligned_cols=174 Identities=12% Similarity=0.093 Sum_probs=112.1
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCC-CEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF-DLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
..++|+++.++++.+++.....+.+.|+|.+|+|||++|+.+++... . ..+ ...+.+..+.......+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-G-ENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-G-GGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-c-cccccceEEeccccccChHHHHHHHHHHhc
Confidence 56899999999999999876665699999999999999999988651 1 111 12334444443333333222221111
Q ss_pred CCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchhhh------------
Q 038405 232 ISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEEVC------------ 297 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~v~------------ 297 (863)
... .-.+++.+||+||++... ....+...+.....+.++|+||+.....
T Consensus 95 ~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 95 TAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp SCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred ccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 000 012578899999998642 2333433333345678899988865422
Q ss_pred cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHH
Q 038405 298 VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIAR 348 (863)
Q Consensus 298 l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 348 (863)
+.+++.++..+++...+...... -..+..+.+++.++|.|..+..+..
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 78899999999998876432211 1256778899999999986554443
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=1e-10 Score=125.23 Aligned_cols=285 Identities=15% Similarity=0.092 Sum_probs=171.1
Q ss_pred CCCccEEEeecccccccchhhhhc-CCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchh-hhc-------
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFES-MGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSE-IMY------- 590 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~-l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~-i~~------- 590 (863)
.++++.|.+.++ +....-..+.. +++|++|||++| .+......-+.++.++++.+..+ .+|.. +.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcc-eeEEecCcccccccccccccccc---ccCHHHhccccccccc
Confidence 567889999876 11111122444 788999999999 56522111223333555555555 44443 566
Q ss_pred -ccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeEEeecCc-hhhhh
Q 038405 591 -LKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEISITLGSA-SALFK 668 (863)
Q Consensus 591 -L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~-~~l~~ 668 (863)
+++|+.|++.+ . +..++.++|.++++|+.|++..|.+..+....+..... +..++...... .....
T Consensus 99 g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~----------l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 99 GKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVT----------AIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp ECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTC----------EEEECTTCTHHHHTSTT
T ss_pred ccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCc----------eEEecCcchhhhhcccc
Confidence 99999999998 3 88899999999999999999988766555444433221 22222111000 00000
Q ss_pred h-hcccccccccc-EEEecccCCccccc---ccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCC--
Q 038405 669 I-NFSWKLCSCIK-RLTIMHNLDSHSID---LRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDL-- 741 (863)
Q Consensus 669 l-~~~~~~~~~L~-~L~l~~~~~~~~~~---l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-- 741 (863)
+ ......+..|+ .+.+.........- -..+.++..+.+.+.- ....... ....+++|+.|+|.+|. ++.+
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~-l~~~~~~L~~l~L~~n~-i~~I~~ 243 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKL-IRDYMPNLVSLDISKTN-ATTIPD 243 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHH-HHHHCTTCCEEECTTBC-CCEECT
T ss_pred ccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeee-cHHHHHH-HHHhcCCCeEEECCCCC-cceecH
Confidence 0 01112233444 34443322211110 1234677777777652 1111100 00137899999999885 4444
Q ss_pred cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccc-eeccccccccccccc-CccCCCCccEEeeccCCCCC
Q 038405 742 TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLM-VIDLDSLPSLKRICH-GTMPFPSLQNVSVTNCPNLR 819 (863)
Q Consensus 742 ~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~L~~l~~-~~~~~~~L~~L~i~~C~~L~ 819 (863)
..+..+++|+.|.|.++ ++.|+. ..+.++++|+ .+.+.+ +++.+.. ....+++|+.+.+.+ .+++
T Consensus 244 ~aF~~~~~L~~l~l~~n--i~~I~~--------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~ 310 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN--LKTIGQ--------RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKIT 310 (329)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECT--------TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCC
T ss_pred hhhhCCCCCCEEECCcc--cceehH--------HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccC
Confidence 34889999999999886 565543 3566788898 998876 7777753 445678899988865 4788
Q ss_pred CCCCCCCCCCCcceEEEc
Q 038405 820 ELPFNFDSAKNSLVSIRG 837 (863)
Q Consensus 820 ~lp~~~~~~~~~l~~i~~ 837 (863)
.++......+.+|+.++.
T Consensus 311 ~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 311 TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTTTTCTTCCCCEEEC
T ss_pred ccchhhhcCCcchhhhcc
Confidence 888766666778887753
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=2.8e-10 Score=109.13 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=95.4
Q ss_pred eEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceeeccCCCc
Q 038405 503 FRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLNLSNTSI 581 (863)
Q Consensus 503 ~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~~i 581 (863)
+.+.+.++.+..+|....++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. +.++++|++|+|++|.|
T Consensus 15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCcc
Confidence 56888899999999877899999999999999998888999999999999999 88888876 58999999999999999
Q ss_pred cccchh-hhcccCccEEecCCCCCccccch
Q 038405 582 EELPSE-IMYLKNLKILLLDGMRHFHLIPA 610 (863)
Q Consensus 582 ~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~ 610 (863)
+.+|.. +..+++|++|++++|. +...+.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred ceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 999986 8999999999999997 555554
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=3e-10 Score=108.50 Aligned_cols=100 Identities=28% Similarity=0.339 Sum_probs=58.6
Q ss_pred cEEEeecccccccchhhhhcCCCccEEeccCCcCcccc-chhhhcccccceeeccCCCccccchh-hhcccCccEEecCC
Q 038405 524 QTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQL-PAEMGALINLRCLNLSNTSIEELPSE-IMYLKNLKILLLDG 601 (863)
Q Consensus 524 r~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~ 601 (863)
++++++++.+..+|..+ .++|++|+|++| .+..+ |..++++++|++|+|++|.|+.+|.. +..+++|++|++++
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45555555555555442 255666666666 44444 44456666666666666666666554 35666666666666
Q ss_pred CCCccccchhhhcCCCCCceeeccCcc
Q 038405 602 MRHFHLIPARVFSSLLSLKVFSLFSTE 628 (863)
Q Consensus 602 ~~~l~~lp~~~i~~L~~L~~L~l~~~~ 628 (863)
|. +..+|.+.+.++++|++|++++|.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 65 555555546666666666666654
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=4.5e-10 Score=107.29 Aligned_cols=101 Identities=25% Similarity=0.312 Sum_probs=92.3
Q ss_pred ceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchh-hhcccccceeeccCCC
Q 038405 502 DFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAE-MGALINLRCLNLSNTS 580 (863)
Q Consensus 502 ~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 580 (863)
.+.+.+.++.+..+|....++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. +.++++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc
Confidence 357888999999999877899999999999999998888999999999999999 78888765 5899999999999999
Q ss_pred ccccchh-hhcccCccEEecCCCC
Q 038405 581 IEELPSE-IMYLKNLKILLLDGMR 603 (863)
Q Consensus 581 i~~lP~~-i~~L~~L~~L~l~~~~ 603 (863)
|+.+|.. +.++++|++|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9999875 8999999999999997
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=3.1e-11 Score=118.88 Aligned_cols=117 Identities=21% Similarity=0.192 Sum_probs=97.6
Q ss_pred CccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhh
Q 038405 511 SIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEI 588 (863)
Q Consensus 511 ~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i 588 (863)
.++.+|... +++|++|++++|.+..+| .+..+++|++|++++| .+..+|..++.+++|++|++++|.+..+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 445555443 889999999999888888 4889999999999999 78889988888899999999999999988 68
Q ss_pred hcccCccEEecCCCCCccccch-hhhcCCCCCceeeccCcchhhh
Q 038405 589 MYLKNLKILLLDGMRHFHLIPA-RVFSSLLSLKVFSLFSTELIEL 632 (863)
Q Consensus 589 ~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~ 632 (863)
..+++|++|++++|. +..+|. ..+..+++|++|++.+|.+...
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 899999999999987 666554 3488999999999998876543
No 153
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=1.5e-11 Score=121.06 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=77.4
Q ss_pred CccEEEeecc--cccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccCCCccccchhhhcccCccEEec
Q 038405 522 HLQTLLVRFT--VLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLL 599 (863)
Q Consensus 522 ~Lr~L~l~~~--~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l 599 (863)
.++...+.++ .++.+|. .+..+++|++|++++| .+..+| .++++++|++|++++|.+..+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 3445555544 4556665 3778888888888888 677787 788888888888888888888888888888888888
Q ss_pred CCCCCccccchhhhcCCCCCceeeccCcch
Q 038405 600 DGMRHFHLIPARVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 600 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 629 (863)
++|. +..+| . ++++++|++|++++|.+
T Consensus 101 ~~N~-l~~l~-~-~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 101 SYNQ-IASLS-G-IEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp EEEE-CCCHH-H-HHHHHHSSEEEESEEEC
T ss_pred cCCc-CCcCC-c-cccCCCCCEEECCCCcC
Confidence 8886 66666 3 77888888888877653
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=8.3e-10 Score=106.35 Aligned_cols=106 Identities=27% Similarity=0.359 Sum_probs=90.5
Q ss_pred ccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceeeccCCCccccchh-hhcccCccEEecC
Q 038405 523 LQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLNLSNTSIEELPSE-IMYLKNLKILLLD 600 (863)
Q Consensus 523 Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~ 600 (863)
.+.+.++++.+..+|... .++|++|++++| .+..+|. .++++++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 577888889999998653 478999999999 6777765 468999999999999999999876 6899999999999
Q ss_pred CCCCccccchhhhcCCCCCceeeccCcchhhhc
Q 038405 601 GMRHFHLIPARVFSSLLSLKVFSLFSTELIELH 633 (863)
Q Consensus 601 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 633 (863)
+|. +..+|...+.++++|++|++++|.+..+.
T Consensus 85 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 85 ENK-LQSLPNGVFDKLTQLKELALDTNQLKSVP 116 (177)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCC-ccccCHHHhhCCcccCEEECcCCcceEeC
Confidence 997 77788776899999999999998765443
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=1.9e-08 Score=109.90 Aligned_cols=110 Identities=19% Similarity=0.249 Sum_probs=81.8
Q ss_pred CccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhcccccceeeccCCCccccchh
Q 038405 511 SIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLNLSNTSIEELPSE 587 (863)
Q Consensus 511 ~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~lP~~ 587 (863)
.++.++... -.+|+.+.+..+ ++.++...|.++ +|+.+.+..+ +..++ ..|.++.+|+.+++++|++..+|..
T Consensus 123 ~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 123 SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechh
Confidence 445555443 236888887665 777777777774 6888888764 55554 4678888899999988888888877
Q ss_pred hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccC
Q 038405 588 IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFS 626 (863)
Q Consensus 588 i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 626 (863)
.-...+|+.+.+..+ +..++..+|.++++|+.+.+..
T Consensus 199 aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 199 TFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred hEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence 555788888888754 7778888888888888888864
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=3.2e-09 Score=113.29 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=110.3
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCC-CEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF-DLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
++++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+ ...+++..++......+. ++++.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVVR-NQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHHH-THHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHHH-HHHHHHH
Confidence 56899999999999999876665699999999999999999998751 1111 123344333322222221 1111110
Q ss_pred CCcccccccChhhHHHHHHHHh-ccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecchhhh-----------
Q 038405 232 ISDYIWNMKGEYDRAVEILISL-RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEEVC----------- 297 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~v~----------- 297 (863)
... ..+ .+++.++|+||++.. ..+..+...+.....++++|+||+...-.
T Consensus 98 ~~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 98 QKK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp HBC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hcc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 000 011 346899999999863 23334433333344678888888764322
Q ss_pred -cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHH-HHHHHHH
Q 038405 298 -VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLA-LITIARA 349 (863)
Q Consensus 298 -l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~~~~ 349 (863)
+.+++.++..+++...+....... ..+....|++.++|.|.. +..+...
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 788999999999988764322111 256778999999999954 4444433
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.82 E-value=7.4e-09 Score=110.50 Aligned_cols=165 Identities=12% Similarity=0.110 Sum_probs=99.8
Q ss_pred ccccchhhHHHHHHHhhcc-----CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIED-----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIR 227 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (863)
+.++|++..++++..++.. .....+.|+|++|+|||++|+.+++.. ... ..++..+.......+...+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHHHH
Confidence 5689999999998888742 344678899999999999999999876 222 23444333222222221111
Q ss_pred HHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCC--------C----------CCCCeEE
Q 038405 228 KKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLS--------D----------CQNGSKI 287 (863)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~--------~----------~~~gs~i 287 (863)
. .+ .+..+|+||+++... ....+...+. . ...+.++
T Consensus 86 ~-----------------------~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 86 N-----------------------SL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp T-----------------------TC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred H-----------------------hc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 0 01 245577778876532 1111110000 0 0123466
Q ss_pred EEeecchhh-------------hcccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHH
Q 038405 288 VFTTRSEEV-------------CVECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAM 350 (863)
Q Consensus 288 ivTTr~~~v-------------~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 350 (863)
|.||..... .+.+++.+|..+++...+...... -..+..+.+++.++|.|-.+..+...+
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 666653321 178889999999988776432211 225678899999999998877666554
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=8.4e-08 Score=104.83 Aligned_cols=209 Identities=14% Similarity=0.166 Sum_probs=136.9
Q ss_pred cceEEEeccCCccccCCCC--CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceeeccC
Q 038405 501 EDFRLSLWGSSIEYLPETP--CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLNLSN 578 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~--~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 578 (863)
.++.+.+..+ ++.++... -.+|+.+.+.. .+..++...|..+++|+.++++++ .+..+|...-...+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCC
Confidence 5667776544 66666654 34689998876 688888888999999999999988 7888887655578999999985
Q ss_pred CCccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccceeeE
Q 038405 579 TSIEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQIYEIS 657 (863)
Q Consensus 579 ~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L~~l~ 657 (863)
.++.++.. +.++++|+.+++..+ +..++..+|.+ .+|+.+.+.. .+..+....+
T Consensus 213 -~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF-------------------- 267 (401)
T 4fdw_A 213 -TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAF-------------------- 267 (401)
T ss_dssp -TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCCEECTTTT--------------------
T ss_pred -chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-CccEEChhHh--------------------
Confidence 48888654 888999999999875 67888887877 7888888853 2222222222
Q ss_pred EeecCchhhhhhhccccccccccEEEecccCCc-----cc--ccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEE
Q 038405 658 ITLGSASALFKINFSWKLCSCIKRLTIMHNLDS-----HS--IDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHL 730 (863)
Q Consensus 658 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~-----~~--~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L 730 (863)
..|++|+.+.+.++... .. ..|.++++|+.+.+.++ ++.++.. .+..+.+|+.|
T Consensus 268 ----------------~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~--aF~~c~~L~~l 328 (401)
T 4fdw_A 268 ----------------YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQG--LLGGNRKVTQL 328 (401)
T ss_dssp ----------------TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTT--TTTTCCSCCEE
T ss_pred ----------------hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhh--hhcCCCCccEE
Confidence 22344555555443322 11 12666666666666632 5555333 44556666666
Q ss_pred EEecCCCCCCC--cccccCCCcceEeeccCc
Q 038405 731 SIRVCPVIRDL--TWIREAPNLQFLSLVNCQ 759 (863)
Q Consensus 731 ~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~ 759 (863)
.|..+ ++.+ ..+..+ +|+.|.+.++.
T Consensus 329 ~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 329 TIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp EECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred EECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 66443 2322 235556 66666666653
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=2.8e-08 Score=106.17 Aligned_cols=174 Identities=14% Similarity=0.144 Sum_probs=109.4
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCC-CEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCF-DLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.+++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... . ..+ ...+.+..+.......+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~-~-~~~~~~~~~~~~~~~~~~~~~~-------- 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF-G-ENWRHNFLELNASDERGINVIR-------- 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH-G-GGHHHHEEEEETTCHHHHHTTH--------
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc-C-CcccCceEEeeccccCchHHHH--------
Confidence 46899999999999999887766799999999999999999998751 1 111 112233322110000000
Q ss_pred CCcccccccChhhHHHHHHHH--h-ccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecchhhh---------
Q 038405 232 ISDYIWNMKGEYDRAVEILIS--L-RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEEVC--------- 297 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~v~--------- 297 (863)
+........ + .+++.++|+||++.. ..+..+...+.....++++|+||+...-.
T Consensus 95 ------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 95 ------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp ------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred ------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 011111110 1 257889999999864 23334433333345578888888765321
Q ss_pred ---cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHHHHHh
Q 038405 298 ---VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIARAMS 351 (863)
Q Consensus 298 ---l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~ 351 (863)
+.+++.++..+++...+....... ..+..+.|++.++|.|..+..+...+.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCEE---CHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 788999999999887764322111 156778899999999986665544443
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=2.3e-08 Score=107.76 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=46.8
Q ss_pred Eeecc-cccccchhhhhcCCCccEEeccC-CcCccccc-hhhhcccccceeeccCCCccccch-hhhcccCccEEecCCC
Q 038405 527 LVRFT-VLEIFPHRFFESMGALKVLDLSY-NLDLTQLP-AEMGALINLRCLNLSNTSIEELPS-EIMYLKNLKILLLDGM 602 (863)
Q Consensus 527 ~l~~~-~l~~l~~~~~~~l~~L~~L~Ls~-~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~l~~~ 602 (863)
+++++ .+..+|. +..+++|++|+|++ | .+..+| ..|++|.+|++|+|++|.|+.+|+ .|.+|++|++|+|++|
T Consensus 14 ~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 14 RCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp ECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 33443 4444444 44455555555553 4 444443 334555555555555555554433 2455555555555555
Q ss_pred CCccccchhhhcCCCCCceeeccCcc
Q 038405 603 RHFHLIPARVFSSLLSLKVFSLFSTE 628 (863)
Q Consensus 603 ~~l~~lp~~~i~~L~~L~~L~l~~~~ 628 (863)
. +..+|...+..++ |++|++.+|.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCC
Confidence 4 4444444333333 5555555443
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.60 E-value=3.1e-08 Score=107.17 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=52.7
Q ss_pred CCCccEEEeecccccccchhhhhc-----CCCccEEeccCCcCccc--cchhhhcccccceeeccCCCccccc-----hh
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFES-----MGALKVLDLSYNLDLTQ--LPAEMGALINLRCLNLSNTSIEELP-----SE 587 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~-----l~~L~~L~Ls~~~~i~~--lp~~i~~L~~L~~L~L~~~~i~~lP-----~~ 587 (863)
.++|++|++++|.+.......+.. .++|++|+|++| .+.. +..-...+.+|++|+|++|.|...+ ..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 345666666666554433222222 256666666666 3321 1111224556666666666665321 11
Q ss_pred h-hcccCccEEecCCCCCccc-----cchhhhcCCCCCceeeccCcc
Q 038405 588 I-MYLKNLKILLLDGMRHFHL-----IPARVFSSLLSLKVFSLFSTE 628 (863)
Q Consensus 588 i-~~L~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~ 628 (863)
+ ...++|++|++++|. +.. ++.. +..+++|++|++++|.
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEG-LAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHH-HHTCSSCCEEECTTSS
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHH-HhcCCCcCEEeCCCCC
Confidence 2 134566666666665 322 2222 3456666666666554
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=1e-07 Score=102.57 Aligned_cols=99 Identities=22% Similarity=0.252 Sum_probs=85.0
Q ss_pred EEEeccC-CccccCCCC-CCCccEEEeec-ccccccchhhhhcCCCccEEeccCCcCccccc-hhhhcccccceeeccCC
Q 038405 504 RLSLWGS-SIEYLPETP-CPHLQTLLVRF-TVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLNLSNT 579 (863)
Q Consensus 504 ~l~l~~~-~~~~l~~~~-~~~Lr~L~l~~-~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~ 579 (863)
.+...++ .+..+|... +++|+.|+|++ |.+..+++..|..+++|++|+|++| .+..+| ..|++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 3566666 788888833 78899999996 9999999888999999999999999 676665 57899999999999999
Q ss_pred CccccchhhhcccCccEEecCCCC
Q 038405 580 SIEELPSEIMYLKNLKILLLDGMR 603 (863)
Q Consensus 580 ~i~~lP~~i~~L~~L~~L~l~~~~ 603 (863)
.|..+|..+....+|+.|++.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 999999876555559999999987
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.57 E-value=3.3e-07 Score=97.36 Aligned_cols=170 Identities=12% Similarity=0.082 Sum_probs=107.0
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCC-EEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFD-LVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
++++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++... ...+. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~------------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGI------------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCT------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccCh------------
Confidence 56899999999999999877666699999999999999999988741 11111 1222333321110
Q ss_pred CCcccccccChhhHHHHHHHH--h-ccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecchhhh---------
Q 038405 232 ISDYIWNMKGEYDRAVEILIS--L-RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEEVC--------- 297 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~v~--------- 297 (863)
....+........ + .+++.++|+|+++.. .....+...+.....+.++|+||....-.
T Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 83 --------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp --------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred --------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 0111111111111 1 256889999999764 23344444444445677888888665421
Q ss_pred ---cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHH
Q 038405 298 ---VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIA 347 (863)
Q Consensus 298 ---l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 347 (863)
+.+++.++..+++...+...... -..+..+.+++.++|.+-.+....
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCC---BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 77889999988888766432211 125677888999999987655433
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.49 E-value=8.4e-07 Score=96.50 Aligned_cols=184 Identities=13% Similarity=0.128 Sum_probs=105.4
Q ss_pred ccccchhhHHHHHHHhhccCC-ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQS-EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.+++|++..++.+...+..+. ...+.|+|++|+||||+|+.+++... ....+. ...+..-.....+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCC-------CCCCcccHHHHHHhccCC
Confidence 468999999999999997654 35788999999999999999987662 111110 000000001111111000
Q ss_pred CCcccc--cccChhhHHHHHHHHh-----ccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecchhhh-----
Q 038405 232 ISDYIW--NMKGEYDRAVEILISL-----RRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEEVC----- 297 (863)
Q Consensus 232 ~~~~~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~v~----- 297 (863)
...... ......+....+.+.+ .+++.++|+||++.. .....+...+.....+..+|++|....-.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 000000 0000011122233332 356789999999753 23333433333334567777777644321
Q ss_pred -------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHHH
Q 038405 298 -------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITIA 347 (863)
Q Consensus 298 -------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 347 (863)
+.+++.++..+++...+....... ..+....|++.++|.|..+..+.
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 788999999999887653322111 25667889999999998776554
No 165
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.49 E-value=8.7e-07 Score=92.12 Aligned_cols=157 Identities=7% Similarity=0.055 Sum_probs=96.3
Q ss_pred ccchhhHHHHHHHhhc----cCCceEEEEEcCCCChHHHHhhhhhhccccccC-----CCCEEEEEEeCCCCCHHHHHHH
Q 038405 155 TVGADSKLDEVWGCIE----DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNH-----CFDLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 155 ~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~F~~~~wv~~~~~~~~~~~~~~ 225 (863)
+.|||+++++|...|. ......+.|+|++|+|||++|+.|++....... .| ..+++......+...+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHH
Confidence 6799999999998874 366778999999999999999999988732111 12 4567777777788899999
Q ss_pred HHHHcCCCcccccccChhhHHHHHHHHh---ccCcEEEEEcccccccccccccccC--CCC-CCCeEEEEeecchhh---
Q 038405 226 IRKKLDISDYIWNMKGEYDRAVEILISL---RRKKFVLLLDDVWERLDLSKTGVSL--SDC-QNGSKIVFTTRSEEV--- 296 (863)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~l--~~~-~~gs~iivTTr~~~v--- 296 (863)
|++++..... ......+....+.+.+ +++++++|||+++.-.+-+.+...+ +.. .....||.++...+.
T Consensus 101 I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999864421 1111222223333332 4568999999998653211111111 111 111223333432211
Q ss_pred h---------------cccCCHHHHHHHHhHhh
Q 038405 297 C---------------VECLSPEAALDLFRYKV 314 (863)
Q Consensus 297 ~---------------l~~L~~~~a~~Lf~~~~ 314 (863)
. +.+++.++-.+++..++
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 0 67788999988888776
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.48 E-value=1.8e-06 Score=94.63 Aligned_cols=102 Identities=13% Similarity=0.211 Sum_probs=60.7
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccc-hhhhcccccceeeccCC-------------------
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCLNLSNT------------------- 579 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~------------------- 579 (863)
|.+|+.+.+.. .++.++...|.++.+|+.+++..+ ++.++ ..+.++..|+.+.+..+
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence 66777777753 366666666777777777777654 33333 24555566655554322
Q ss_pred --Cccccc-hhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccC
Q 038405 580 --SIEELP-SEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFS 626 (863)
Q Consensus 580 --~i~~lP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 626 (863)
.+..++ ..+.++.+|+.+.+.++ +..++.++|.++.+|+.+.+..
T Consensus 147 ~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 147 PEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred CccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 111121 23556777777777654 4556666677777777777754
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.32 E-value=7.7e-07 Score=86.49 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=41.4
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++||++.++++.+.+.....+.+.|+|.+|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987667788999999999999999998875
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=3.1e-06 Score=91.17 Aligned_cols=183 Identities=11% Similarity=0.114 Sum_probs=105.7
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccc-cCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDV-NHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
..++|+++.++.+..++.......+.|+|++|+||||+|+.+++..... ...+ ....+..+.......+...+.....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVREKVKNFAR 115 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHHHHHHHhh
Confidence 5689999999999999987655558999999999999999998875110 0111 2233444433333332221111100
Q ss_pred CCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchhhh------------
Q 038405 232 ISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEEVC------------ 297 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~v~------------ 297 (863)
... ...... .....-.+++-+|++|+++... ....+...+.......++|++|....-.
T Consensus 116 ~~~----~~~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 116 LTV----SKPSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp SCC----CCCCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred hcc----cccchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 000 000000 0000112356799999987542 2233333232233456777777544321
Q ss_pred cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 298 VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 298 l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
+.+++.++..+.+...+....... ..+..+.|++.++|.|-.+..+
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENVKC---DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHTSSCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 778899999888887664322111 2567889999999998765443
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=6.4e-06 Score=90.16 Aligned_cols=277 Identities=17% Similarity=0.167 Sum_probs=156.0
Q ss_pred ccccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCc------------------
Q 038405 498 SWREDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNL------------------ 556 (863)
Q Consensus 498 ~~~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~------------------ 556 (863)
....++.+.+. +.++.++... |++|+.+.+..+ ++.++...|..+..|+.+.+..+-
T Consensus 69 ~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 69 GCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp TCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred CCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence 33467777775 4467776654 889999998755 677777778888888776665320
Q ss_pred --Ccccc-chhhhcccccceeeccCCCccccchh-hhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhh
Q 038405 557 --DLTQL-PAEMGALINLRCLNLSNTSIEELPSE-IMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIEL 632 (863)
Q Consensus 557 --~i~~l-p~~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 632 (863)
....+ ...|.++.+|+.+.+..+ +..++.. +.++.+|+.+.+..+ +..++..++.++..|+.+.+..+... +
T Consensus 147 ~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~-i 222 (394)
T 4fs7_A 147 PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYY-L 222 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCE-E
T ss_pred CccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceE-e
Confidence 00111 234667889999999765 4556544 778999999999876 67788888999999999887653211 1
Q ss_pred ccCCCCccccchhhhhhcccceeeEEeecCchhhhhhhccccccccccEEEecccCCccc-ccccccCCcceeEeccCcc
Q 038405 633 HRMPPNQTTILDELECLGNQIYEISITLGSASALFKINFSWKLCSCIKRLTIMHNLDSHS-IDLRNMMHLETLNIVECSL 711 (863)
Q Consensus 633 ~~~~~~~~~~l~~L~~l~n~L~~l~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~l 711 (863)
..... ... .++.+.+.- ....+. ......+..++.+.+..+...-. ..+..+..|+.+......+
T Consensus 223 ~~~~~-~~~----------~l~~i~ip~-~~~~i~--~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 223 GDFAL-SKT----------GVKNIIIPD-SFTELG--KSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CTTTT-TTC----------CCCEEEECT-TCCEEC--SSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE
T ss_pred ehhhc-ccC----------CCceEEECC-Cceecc--cccccccccceeEEcCCCcceeeccccccccccceeccCceee
Confidence 00000 111 222222110 000000 01123355666666654432211 1266667777776655432
Q ss_pred cccCCCCCCCCCCCCCCEEEEecCCCCCCC--cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccc
Q 038405 712 ERVDPTFNGWTNFHNLHHLSIRVCPVIRDL--TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLD 789 (863)
Q Consensus 712 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~ 789 (863)
... .+..+.+|+.+.+..+ ++.+ ..+..+++|+.+.|... ++.|.. ..+.++.+|+.+.|.
T Consensus 289 ~~~-----~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~--------~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 289 PEK-----TFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGK--------RSFRGCTSLSNINFP 351 (394)
T ss_dssp CTT-----TTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECT--------TTTTTCTTCCEECCC
T ss_pred ccc-----cccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhH--------HhccCCCCCCEEEEC
Confidence 211 3446777888877653 3333 23667778888877532 333321 234455666666664
Q ss_pred cccccccccc-CccCCCCccEEeec
Q 038405 790 SLPSLKRICH-GTMPFPSLQNVSVT 813 (863)
Q Consensus 790 ~~~~L~~l~~-~~~~~~~L~~L~i~ 813 (863)
. +++.+.. ....+++|+.+.+.
T Consensus 352 ~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 352 L--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp T--TCCEECTTTBTTCTTCCEEEEE
T ss_pred c--cccEehHHHhhCCCCCCEEEEC
Confidence 2 2444432 12234455555543
No 170
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.24 E-value=3.1e-06 Score=88.08 Aligned_cols=159 Identities=17% Similarity=0.212 Sum_probs=92.0
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL 219 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 219 (863)
++++|.++.++++.+.+.. ...+-+.|+|++|+|||+||+.+++.. ... .+.+..+.-.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~-- 88 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELV-- 88 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHH--
Confidence 5689999999999887732 345679999999999999999999876 222 2233322110
Q ss_pred HHHHHHHHHHcCCCcccccccChhhHHHHH-HHHhccCcEEEEEccccccc----------------ccccccccCC--C
Q 038405 220 EKIQEVIRKKLDISDYIWNMKGEYDRAVEI-LISLRRKKFVLLLDDVWERL----------------DLSKTGVSLS--D 280 (863)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~--~ 280 (863)
... ..........+ ......++.+|+|||++... .+..+...+. .
T Consensus 89 ------------~~~----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 89 ------------KKF----IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp ------------CCS----TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred ------------Hhc----cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 000 01111122222 22234466899999997531 1111111111 1
Q ss_pred CCCCeEEEEeecchhhh---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCC
Q 038405 281 CQNGSKIVFTTRSEEVC---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGL 339 (863)
Q Consensus 281 ~~~gs~iivTTr~~~v~---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 339 (863)
...+..||.||...... +...+.++..+++...+.......... ...+++.+.|.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~ 222 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGC 222 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTC
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCC
Confidence 23456777787654322 667888888899888765433222222 45667777764
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.24 E-value=1.3e-06 Score=88.30 Aligned_cols=161 Identities=9% Similarity=0.062 Sum_probs=93.3
Q ss_pred ccccch---hhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 153 EKTVGA---DSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 153 ~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
+.++|. +..++.+..+......+.+.|+|++|+||||+|+.+++... .....+.|+..+.... .
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~----------~ 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHAS----------I 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGG----------S
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHH----------H
Confidence 457763 35566666666655678899999999999999999998762 1223456666533110 0
Q ss_pred cCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccccc----cccccccCCC-CCCC-eEEEEeecchhh------h
Q 038405 230 LDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERLD----LSKTGVSLSD-CQNG-SKIVFTTRSEEV------C 297 (863)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~l~~-~~~g-s~iivTTr~~~v------~ 297 (863)
+ .+. .+.+ .++.+||+||++.... ...+...+.. ...+ .++|+||+...- .
T Consensus 95 ~------------~~~----~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 95 S------------TAL----LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp C------------GGG----GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred H------------HHH----HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 0 000 0011 3567899999976421 1222221110 0112 247777764321 0
Q ss_pred -------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 298 -------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 298 -------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
+.+++.++..+++...+..... .-..+..+.+++.++|.+-.+..+
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHH
Confidence 6778888888888776642221 112567778888888887655543
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.22 E-value=4.7e-07 Score=97.86 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=78.6
Q ss_pred cceEEEeccCCcccc--CCCC--CCCccEEEeecccccccchhhh-----hcCCCccEEeccCCcCccc-----cchhhh
Q 038405 501 EDFRLSLWGSSIEYL--PETP--CPHLQTLLVRFTVLEIFPHRFF-----ESMGALKVLDLSYNLDLTQ-----LPAEMG 566 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l--~~~~--~~~Lr~L~l~~~~l~~l~~~~~-----~~l~~L~~L~Ls~~~~i~~-----lp~~i~ 566 (863)
.++.+++.+|.+... .... +++|+.|++++|.+.......+ ...+.|++|+|++| .+.. ++..+.
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLA 180 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHh
Confidence 566777777766431 1111 5677788888776654433322 23567888888877 4432 455556
Q ss_pred cccccceeeccCCCccc-----cchhhhcccCccEEecCCCCCccc-----cchhhhcCCCCCceeeccCcch
Q 038405 567 ALINLRCLNLSNTSIEE-----LPSEIMYLKNLKILLLDGMRHFHL-----IPARVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 567 ~L~~L~~L~L~~~~i~~-----lP~~i~~L~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~ 629 (863)
.+++|++|+|++|.|.. ++..+...++|++|++++|. +.. ++.. +...++|++|++++|.+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARA-AREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHH-HHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHH-HHhCCCCCEEeccCCCC
Confidence 67778888888877663 35556667778888888776 332 2222 44567788888877764
No 173
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.15 E-value=4.5e-05 Score=78.58 Aligned_cols=186 Identities=15% Similarity=0.083 Sum_probs=96.8
Q ss_pred ccccchhhHHHHHHH-------hhc---cCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHH
Q 038405 153 EKTVGADSKLDEVWG-------CIE---DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKI 222 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 222 (863)
..++|....++++.. .+. ....+.+.|+|++|+|||++|+.+++.. ...| +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHH------
Confidence 457787777666665 232 3456779999999999999999999875 2222 22222210
Q ss_pred HHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccc-----------cc-cccccccCC---CCCCCeEE
Q 038405 223 QEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWER-----------LD-LSKTGVSLS---DCQNGSKI 287 (863)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~-~~~~~~~l~---~~~~gs~i 287 (863)
..+.. ...........+......+..+|+|||++.. .. +..+...+. .......|
T Consensus 101 ------~~g~~----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ------MIGFS----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ------CTTCC----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ------hcCCc----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00100 0000011112222233456889999998753 11 111211121 12334456
Q ss_pred EEeecchhhh--------------cccCCH-HHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCC------ChHHHHHH
Q 038405 288 VFTTRSEEVC--------------VECLSP-EAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKG------LPLALITI 346 (863)
Q Consensus 288 ivTTr~~~v~--------------l~~L~~-~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPLai~~~ 346 (863)
|.||...... +.+++. ++...++..... -..+....|++.+.| .+-++..+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~--------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN--------FKDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC--------SCHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC--------CCHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 6677765331 455555 555555544211 114567788888877 33444333
Q ss_pred HHHHhCCCChhhHHHHHHHHhcC
Q 038405 347 ARAMSSRRSPREWQYVIDELQRN 369 (863)
Q Consensus 347 ~~~l~~~~~~~~w~~~~~~l~~~ 369 (863)
-... .......+..+++.+...
T Consensus 243 ~~a~-~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 243 EMSL-QMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHT-TSCGGGHHHHHHHHHHHT
T ss_pred HHHh-hhchHHHHHHHHHHHHHc
Confidence 3332 224456677777666554
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=1.2e-05 Score=90.81 Aligned_cols=178 Identities=11% Similarity=0.110 Sum_probs=102.5
Q ss_pred ccccchhhHHHHHHHhhcc-----------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCC
Q 038405 153 EKTVGADSKLDEVWGCIED-----------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSK 215 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 215 (863)
.+++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. . + .++.+..+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 5689999999999999964 134789999999999999999999876 1 1 234555555
Q ss_pred CCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH--HhccCcEEEEEcccccccc-----cccccccCCCCCCCeEEE
Q 038405 216 EGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI--SLRRKKFVLLLDDVWERLD-----LSKTGVSLSDCQNGSKIV 288 (863)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~~~-----~~~~~~~l~~~~~gs~ii 288 (863)
......+ ...+....... ..........+ ...+++.+||+|+++.... +..+...+.. .+..||
T Consensus 113 ~~~~~~~-~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iI 183 (516)
T 1sxj_A 113 VRSKTLL-NAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLI 183 (516)
T ss_dssp CCCHHHH-HHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEE
T ss_pred cchHHHH-HHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEE
Confidence 4443322 22222111100 00000000000 1235788999999976421 1222211111 223455
Q ss_pred Eeecchh---hh----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCC-hHHHHHHHH
Q 038405 289 FTTRSEE---VC----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGL-PLALITIAR 348 (863)
Q Consensus 289 vTTr~~~---v~----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~ 348 (863)
+++.... +. +.+++.++..+.+...+.......+ .+....|++.++|. +-|+..+..
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5554432 11 7778999999888776644332222 34577899999994 555555543
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=5.5e-06 Score=89.25 Aligned_cols=184 Identities=9% Similarity=0.052 Sum_probs=97.7
Q ss_pred ccccchhhHHHHHHHhh-ccCCceEEEEEcCCCChHHHHhhhhhhccccc-cC--CCCEE--------------------
Q 038405 153 EKTVGADSKLDEVWGCI-EDQSEQTIGLYGMGGVGKITLLKKPNNKFLDV-NH--CFDLV-------------------- 208 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--~F~~~-------------------- 208 (863)
++++|.+..++.+.+++ ..+....+.|+|+.|+||||+|+.++...... .+ .++..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 56899999999999998 66555559999999999999999988743110 01 01110
Q ss_pred EEEEeCCCC-CHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCe
Q 038405 209 IFVAVSKEG-NLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGS 285 (863)
Q Consensus 209 ~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs 285 (863)
+.+..+... ......+++++.+..... ..... .+ ..+.+++-++|+|++.... ....+...+.....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 111111000 000011112211110000 00000 00 0023467799999997631 1222322222223467
Q ss_pred EEEEeecchhhh------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 286 KIVFTTRSEEVC------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 286 ~iivTTr~~~v~------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
.+|++|....-. +.+++.++..+.+...+.......+ ..+....|++.++|.+-.+..+
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHH
Confidence 888877664321 7789999999988877643221111 0356788899999988655443
No 176
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.11 E-value=2.9e-05 Score=85.54 Aligned_cols=164 Identities=16% Similarity=0.121 Sum_probs=97.3
Q ss_pred ccccchhhHH---HHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC-CCHHHHHHHHHH
Q 038405 153 EKTVGADSKL---DEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE-GNLEKIQEVIRK 228 (863)
Q Consensus 153 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~ 228 (863)
+++||.+..+ ..+...+.......+.|+|.+|+||||+|+.+++.. ...| +.++.. .....+. .++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~ir-~~~- 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKEIR-EAI- 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHHHH-HHH-
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHHHH-HHH-
Confidence 5689999888 778888877777889999999999999999999876 2222 222211 1222211 111
Q ss_pred HcCCCcccccccChhhHHHHHHH-HhccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchhhh--------
Q 038405 229 KLDISDYIWNMKGEYDRAVEILI-SLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEEVC-------- 297 (863)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~v~-------- 297 (863)
..... ...+++.+|++|+++... ....+...+.. +.-.-|..||.+....
T Consensus 96 ------------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 96 ------------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp ------------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTT
T ss_pred ------------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCc
Confidence 11111 124678899999997642 23333322222 2222233355554322
Q ss_pred -----cccCCHHHHHHHHhHhhCccc--c--CCCCChHHHHHHHHHHcCCChHHHHH
Q 038405 298 -----VECLSPEAALDLFRYKVGEDV--F--NSHPEIPTLAQAVVGECKGLPLALIT 345 (863)
Q Consensus 298 -----l~~L~~~~a~~Lf~~~~~~~~--~--~~~~~~~~~~~~i~~~c~glPLai~~ 345 (863)
+.+++.++...++...+.... . ....-..+..+.+++.++|.+-.+..
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 888999999998887753210 0 00111256778888889988754443
No 177
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=6.3e-06 Score=88.22 Aligned_cols=81 Identities=17% Similarity=0.037 Sum_probs=45.1
Q ss_pred hcCCCccEEeccCCcC---------ccccchhhhcccccceeeccCCCccccchhhhcccCccEEecCCCCCccccchhh
Q 038405 542 ESMGALKVLDLSYNLD---------LTQLPAEMGALINLRCLNLSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARV 612 (863)
Q Consensus 542 ~~l~~L~~L~Ls~~~~---------i~~lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~ 612 (863)
..+++|+.|.+.+... ...++..+..+++|+.|+|++|.-..+|. + .+++|++|++..|. +..-....
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG-LPDSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB-CCHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC-CChHHHHH
Confidence 4556666666644310 11344555667778888877763224444 3 36778888877665 22111111
Q ss_pred hc--CCCCCceeecc
Q 038405 613 FS--SLLSLKVFSLF 625 (863)
Q Consensus 613 i~--~L~~L~~L~l~ 625 (863)
+. .+++|++|+++
T Consensus 213 l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHSBCTTCCEEEEE
T ss_pred HHHccCCCCcEEEEe
Confidence 22 67777777765
No 178
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.04 E-value=3.8e-05 Score=81.17 Aligned_cols=167 Identities=16% Similarity=0.159 Sum_probs=95.9
Q ss_pred ccccchhhHHHHHHHhhc----------c--CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKLDEVWGCIE----------D--QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
.+++|.+..++.+.+.+. . ...+-|.++|++|+|||+||+.+++.. ...| +.++. .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~---~~v~~------~ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSS------S 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEE---EEEEH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCE---EEEch------H
Confidence 568899999999988772 1 123568999999999999999999876 2222 22322 1
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHHH-hccCcEEEEEcccccccc-------------cccccc---cCCCCCC
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILIS-LRRKKFVLLLDDVWERLD-------------LSKTGV---SLSDCQN 283 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------------~~~~~~---~l~~~~~ 283 (863)
.+ .... ....+.....+.+. -..++.+|+||+++.... ...+.. .+.....
T Consensus 86 ~l----~~~~--------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DL----VSKW--------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HH----HTTT--------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HH----hhcc--------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 1110 01112222233222 234678999999985311 111111 1112334
Q ss_pred CeEEEEeecchhhh-------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCC-hHHHHHH
Q 038405 284 GSKIVFTTRSEEVC-------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGL-PLALITI 346 (863)
Q Consensus 284 gs~iivTTr~~~v~-------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 346 (863)
+..||.||...... +...+.++-.+++...+...... -.......|++.+.|. +-.|..+
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV---LTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC---CCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 55666677654332 56677788888888776543211 1245667888888874 4344433
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.03 E-value=2.8e-05 Score=85.81 Aligned_cols=171 Identities=18% Similarity=0.165 Sum_probs=97.0
Q ss_pred cccc-chhh--HHHHHHHhhccCC-ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 038405 153 EKTV-GADS--KLDEVWGCIEDQS-EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRK 228 (863)
Q Consensus 153 ~~~v-Gr~~--~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (863)
+.|| |... ....+........ ...+.|+|.+|+||||||+.+++.... ...-..+++++.. .+..++..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHH------HHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHH------HHHHHHHH
Confidence 3455 6433 2333444444433 677999999999999999999987621 1111234555432 33344444
Q ss_pred HcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccccc----cccccccCCC-CCCCeEEEEeecchhhh------
Q 038405 229 KLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERLD----LSKTGVSLSD-CQNGSKIVFTTRSEEVC------ 297 (863)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~l~~-~~~gs~iivTTr~~~v~------ 297 (863)
.+... . ...+.+.++.+.-+|++||++.... .+.+...+.. ...|..||+||.+..-.
T Consensus 178 ~~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~ 246 (440)
T 2z4s_A 178 SMKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_dssp HHHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCH
T ss_pred HHHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHH
Confidence 33211 1 1223334444677999999975432 1222222211 23467899988863211
Q ss_pred -------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 298 -------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 298 -------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
+.+++.++-.+++...+.......+ .+....|++.++|.+-.+.
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHH
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 6677888888888877643222222 3456778888888875443
No 180
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.02 E-value=4e-05 Score=82.26 Aligned_cols=169 Identities=12% Similarity=0.074 Sum_probs=94.5
Q ss_pred ccccchhhHHHHHHHhhcc------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKLDEVWGCIED------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
.+++|.+..++++.+.+.. ...+.|.|+|++|+|||+||+.+++.. .. ..+.+..+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--
Confidence 5689999999999887731 345679999999999999999998875 22 223444332110
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHHH-hccCcEEEEEccccccc-------------ccccccccCC----CCC
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILIS-LRRKKFVLLLDDVWERL-------------DLSKTGVSLS----DCQ 282 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~----~~~ 282 (863)
.. ..........+... -..++.+|+||+++... ....+...+. ...
T Consensus 156 ------------~~----~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ------------KW----VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ------------SS----TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ------------cc----cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 00111122222222 23567899999996421 0111211111 122
Q ss_pred CCeEEEEeecchhhh-------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCC-hHHHHHHHH
Q 038405 283 NGSKIVFTTRSEEVC-------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGL-PLALITIAR 348 (863)
Q Consensus 283 ~gs~iivTTr~~~v~-------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~ 348 (863)
.+..||.||...... +...+.++..+++...+...... -..+....|++.+.|. +-.+..+..
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666543221 55567777777777665322111 1145677888888884 445554433
No 181
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.02 E-value=0.00022 Score=75.12 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=94.6
Q ss_pred ccccchhhHHHHHHHhhcc------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKLDEVWGCIED------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
++++|.++.++.+.+.+.- ...+-|.++|++|+|||+||+.+++... .. ..+.+..+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~~i~~~~l~--- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDLV--- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SC---EEEEEECCSSC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CC---cEEEEEhHHHH---
Confidence 5688999988888876621 2236789999999999999999998751 11 22333333211
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHHH-hccCcEEEEEcccccccc-------------ccccccc---CCCCCC
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILIS-LRRKKFVLLLDDVWERLD-------------LSKTGVS---LSDCQN 283 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------------~~~~~~~---l~~~~~ 283 (863)
.. +... .+.....+.+. -..++.+|++|+++.... ...+... +.....
T Consensus 84 -----------~~---~~g~-~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 84 -----------SK---WLGE-SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp -----------CS---SCCS-CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred -----------hh---hhhH-HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 00 0111 12222333332 235788999999975310 0011111 111234
Q ss_pred CeEEEEeecchhhh-------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh-HHHHHHH
Q 038405 284 GSKIVFTTRSEEVC-------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP-LALITIA 347 (863)
Q Consensus 284 gs~iivTTr~~~v~-------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 347 (863)
+..||.||...... +...+.++-.+++...+....... .......|++.+.|.. -.|..+.
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55566666544322 556677777788877664322111 2456788889988874 3344443
No 182
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.01 E-value=4.2e-05 Score=81.62 Aligned_cols=160 Identities=11% Similarity=0.031 Sum_probs=94.2
Q ss_pred ccccchhhHHHHHHHhhcc-----CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 038405 153 EKTVGADSKLDEVWGCIED-----QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIR 227 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (863)
++++|++..++++..++.. .....|.|+|++|+|||++|+.+++.. ...| +.+..+.......+.
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~~---- 98 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDLA---- 98 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHHH----
Confidence 5789999999999988853 345678999999999999999998875 2332 223322111111111
Q ss_pred HHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCC------------------CCCCCeEE
Q 038405 228 KKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLS------------------DCQNGSKI 287 (863)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~------------------~~~~gs~i 287 (863)
..+. . ..+..+|+||+++... ....+...+. ...++..+
T Consensus 99 -------------------~~~~-~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 99 -------------------AILT-N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp -------------------HHHH-T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred -------------------HHHH-h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 1111 0 1355678888887531 1111111100 01113456
Q ss_pred EEeecchhhh-------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHHH
Q 038405 288 VFTTRSEEVC-------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALITI 346 (863)
Q Consensus 288 ivTTr~~~v~-------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 346 (863)
|.||...... +.+++.++..+++...+...... -..+..+.+++.+.|.|-.+..+
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHH
Confidence 6666543211 78889999999888776432211 12567788889999998554433
No 183
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.01 E-value=0.00012 Score=80.00 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=43.4
Q ss_pred ccEEEeecccccccchhhhhcCCCccEEeccCC--cCccccch-hhhcccccceeeccCCCccccchh-hhcccCccEEe
Q 038405 523 LQTLLVRFTVLEIFPHRFFESMGALKVLDLSYN--LDLTQLPA-EMGALINLRCLNLSNTSIEELPSE-IMYLKNLKILL 598 (863)
Q Consensus 523 Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~--~~i~~lp~-~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~ 598 (863)
|+.+.+..+ ++.+....|.++.+|+.+.+..+ ..++.++. .|.++.+|+.+.+..+ +..++.. +..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 455554432 44455555555555555555443 11233322 3344445554444332 3333322 34445555555
Q ss_pred cCCCCCccccchhhhcCCCCCceeecc
Q 038405 599 LDGMRHFHLIPARVFSSLLSLKVFSLF 625 (863)
Q Consensus 599 l~~~~~l~~lp~~~i~~L~~L~~L~l~ 625 (863)
+..+ +..++..++..+.+|+.+.+.
T Consensus 144 lp~~--~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 144 IPEG--VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred ccce--eeeecccceeccccccccccc
Confidence 5432 333444444444555544443
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.01 E-value=1e-05 Score=85.30 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=36.0
Q ss_pred cccchhhHHHHHHHhhc---------------cCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCIE---------------DQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|.+..++.+.+.+. ......+.|+|.+|+|||++|+.+++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 47899888888876653 2344578999999999999999888766
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.00 E-value=3.5e-05 Score=81.66 Aligned_cols=165 Identities=12% Similarity=0.060 Sum_probs=94.7
Q ss_pred ccccchhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
++++|.+..++.+.+++..... .++.+.|++|+|||++|+.+++.. . ...+.++.+.. ....+...+.+...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i~~~~~~~~~ 98 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFVRGPLTNFAS 98 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHHHTHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHHHHHHHHHHh
Confidence 5689999999999999976543 577888889999999999998875 1 12344544332 22222111111000
Q ss_pred CCcccccccChhhHHHHHHHHhccCcEEEEEccccccc---ccccccccCCCCCCCeEEEEeecchhhh-----------
Q 038405 232 ISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL---DLSKTGVSLSDCQNGSKIVFTTRSEEVC----------- 297 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~~~~~l~~~~~gs~iivTTr~~~v~----------- 297 (863)
.. ...+++.+||+||++... ....+...+.....+.++|+||....-.
T Consensus 99 ~~------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 99 AA------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp BC------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred hc------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 00 012367899999998643 2222322222222456788887764422
Q ss_pred -cccCCHHHHHHHH-------hHhhCccccCCCCChHHHHHHHHHHcCCChHHHH
Q 038405 298 -VECLSPEAALDLF-------RYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALI 344 (863)
Q Consensus 298 -l~~L~~~~a~~Lf-------~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 344 (863)
+++++.++-.+++ ...+.......++ .+....+++.++|.+-.+.
T Consensus 161 ~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 6677777743332 2222222111111 2677888888888765433
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.98 E-value=4.3e-05 Score=78.24 Aligned_cols=164 Identities=12% Similarity=0.096 Sum_probs=88.7
Q ss_pred ccccchhhHHHHHHHhhc---c---------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKLDEVWGCIE---D---------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
.+++|.+..++++.+++. . ...+-|.|+|++|+|||++|+.+++.. ... .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 468899988877766542 1 223568899999999999999999876 222 23344332110
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc-------------c----cccccccCCC--C
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL-------------D----LSKTGVSLSD--C 281 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~----~~~~~~~l~~--~ 281 (863)
.. ...........+.......+.+|++|+++... . +..+...+.. .
T Consensus 78 --------~~-------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 --------VI-------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp --------SS-------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred --------hc-------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 00 01111111222222333467899999997531 1 1111111111 2
Q ss_pred CCCeEEEEeecchhhh---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH
Q 038405 282 QNGSKIVFTTRSEEVC---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL 341 (863)
Q Consensus 282 ~~gs~iivTTr~~~v~---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 341 (863)
..+..||.||...... +...+.++-.+++...+.... ...........+++.+.|.+-
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK--LTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT--CCBTHHHHHHHHHHTCTTCCH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC--CCcchhhHHHHHHHHCCCCCH
Confidence 2355666777544321 556778888888877654322 111222345778888888754
No 187
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.94 E-value=0.00018 Score=78.14 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=91.7
Q ss_pred ccccchhhHHHHHHHhhcc------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKLDEVWGCIED------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
.+++|.+..++.+.+++.. ...+-|.|+|.+|+|||+||+.+++.. .. ..+.+..+.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 5689999999999988721 234678999999999999999998875 22 223333322111
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHHHh-ccCcEEEEEccccccc--------c-----cccccccC---CC-CC
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILISL-RRKKFVLLLDDVWERL--------D-----LSKTGVSL---SD-CQ 282 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~-----~~~~~~~l---~~-~~ 282 (863)
.. .... ......+.+.. .....+|+||+++... . ...+...+ .. ..
T Consensus 187 ~~---------------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KY---------------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp --------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc---------------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 0011 11222222222 3456899999997530 0 01111111 11 12
Q ss_pred CCeEEEEeecchhhh-------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH-HHHHH
Q 038405 283 NGSKIVFTTRSEEVC-------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL-ALITI 346 (863)
Q Consensus 283 ~gs~iivTTr~~~v~-------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 346 (863)
....||.||...... +...+.++..+++...+...... -..+....+++.+.|..- ++..+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP---LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC---SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 234555566543322 55667788888887766432211 124566788888888653 44443
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.92 E-value=6.4e-05 Score=80.47 Aligned_cols=167 Identities=16% Similarity=0.132 Sum_probs=93.3
Q ss_pred ccccchhhHHHHHHHhhcc------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKLDEVWGCIED------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
.+++|.+..++.+.+.+.. ...+-|.|+|++|+|||+||+.+++.. ... .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 5688999999999887721 123458899999999999999999876 222 2223221
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHH-HhccCcEEEEEcccccccc-------------cccccccC---CCCCC
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILI-SLRRKKFVLLLDDVWERLD-------------LSKTGVSL---SDCQN 283 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l---~~~~~ 283 (863)
.+ .... ... .+.....+.. .-..++.+|+||+++.... ...+...+ .....
T Consensus 119 ~l----~~~~-------~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 DL----VSKW-------MGE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HH----HSCC-----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred HH----hhhh-------cch-HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 11 1111 011 1222222222 2235789999999985321 11111111 11234
Q ss_pred CeEEEEeecchhhh-------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCC-hHHHHHH
Q 038405 284 GSKIVFTTRSEEVC-------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGL-PLALITI 346 (863)
Q Consensus 284 gs~iivTTr~~~v~-------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 346 (863)
+..||.||...... +...+.++-.+++...+....... -......|++.+.|. +-.|..+
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 55566677654322 566677777888887765332111 145667888888884 4334433
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.91 E-value=2.9e-05 Score=74.71 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=41.4
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++||+.+++.+.+.+.....+.+.|+|.+|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987667778999999999999999998875
No 190
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.90 E-value=6e-05 Score=80.45 Aligned_cols=164 Identities=12% Similarity=0.188 Sum_probs=93.5
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCC-EEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFD-LVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
..++|.+..++.+...+..+..+.+.++|+.|+||||+|+.++.... ...+. .+..+..+.......+...+ .
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir~~i-~--- 98 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVRNQI-K--- 98 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHHTHH-H---
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHHHHH-H---
Confidence 45789999999999988877665589999999999999999988751 11111 11222222222222111111 1
Q ss_pred CCcccccccChhhHHHHHHHH---hccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeecchhh----------
Q 038405 232 ISDYIWNMKGEYDRAVEILIS---LRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTRSEEV---------- 296 (863)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~---l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr~~~v---------- 296 (863)
.+.+. +.+.+-++|+|+++... ....+...+......+++|++|....-
T Consensus 99 ----------------~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 99 ----------------DFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp ----------------HHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred ----------------HHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 11100 12346789999997532 222232222222345677777754431
Q ss_pred --hcccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH
Q 038405 297 --CVECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL 341 (863)
Q Consensus 297 --~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 341 (863)
.+.+++.++..+.+...+....... ..+..+.|++.++|.+-
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~i---~~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLKL---SPNAEKALIELSNGDMR 206 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCB---CHHHHHHHHHHHTTCHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 1667888887777766552211111 14566778888888765
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.89 E-value=0.00013 Score=76.10 Aligned_cols=167 Identities=11% Similarity=0.072 Sum_probs=93.0
Q ss_pred ccccchhhHHHHHHHhhcc------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKLDEVWGCIED------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
.+++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.. ... .+.+..+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHhh--
Confidence 5689999999999887732 235678999999999999999999876 222 23333322110
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHH-HhccCcEEEEEccccccccc-------------cccc---ccCCC--C
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILI-SLRRKKFVLLLDDVWERLDL-------------SKTG---VSLSD--C 281 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~-------------~~~~---~~l~~--~ 281 (863)
. ...........+.. ....++.+|++|+++....- ..+. ..++. .
T Consensus 93 ------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------K----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------S----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------c----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 01111222222222 22356789999999753110 0111 11111 1
Q ss_pred CCCeEEEEeecchhhh-------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH-HHHHH
Q 038405 282 QNGSKIVFTTRSEEVC-------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL-ALITI 346 (863)
Q Consensus 282 ~~gs~iivTTr~~~v~-------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 346 (863)
+.+..||.||...... +...+.++...++...+..... +-.......+++.+.|.+- ++..+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2345566677654321 4455666666777665533211 1114566788888888775 44443
No 192
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.89 E-value=4.4e-05 Score=82.60 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=36.7
Q ss_pred ccccchhhHHHH---HHHhhccCCc--eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDE---VWGCIEDQSE--QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.+||++..++. +.+.+..... +.+.|+|++|+|||++|+.+++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999988766 4445544433 589999999999999999999887
No 193
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.88 E-value=0.00022 Score=77.86 Aligned_cols=265 Identities=11% Similarity=0.135 Sum_probs=145.2
Q ss_pred ceEEEeccCCccccCCCC---CCCccEEEeecc---cccccchhhhhcCCCccEEeccCCcCccccc-hhhhccccccee
Q 038405 502 DFRLSLWGSSIEYLPETP---CPHLQTLLVRFT---VLEIFPHRFFESMGALKVLDLSYNLDLTQLP-AEMGALINLRCL 574 (863)
Q Consensus 502 ~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~---~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L 574 (863)
++.+.+. +.++.+.... |.+|+.+.+..+ .++.+....|..+..|+.+.+..+ +..++ ..+.++.+|+.+
T Consensus 66 L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEE
T ss_pred CEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccc
Confidence 5666665 3466666554 899999999876 478888888999999998888765 44454 356788999999
Q ss_pred eccCCCccccch-hhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccCcchhhhccCCCCccccchhhhhhcccc
Q 038405 575 NLSNTSIEELPS-EIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFSTELIELHRMPPNQTTILDELECLGNQI 653 (863)
Q Consensus 575 ~L~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~l~n~L 653 (863)
.+..+ +..++. .+..+.+|+.+.+.++ +..+...+|.. .+|..+.+..+- ..+....+.....+.......+..
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSS
T ss_pred cccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcc-cccccchhhhccccceeccccccc
Confidence 99754 555554 4778899999999765 67777776654 678888876422 111111111222222111111000
Q ss_pred eeeEEeecCchhhhh-hhccccccccccEEEecccCC-cccccccccCCcceeEeccCcccccCCCCCCCCCCCCCCEEE
Q 038405 654 YEISITLGSASALFK-INFSWKLCSCIKRLTIMHNLD-SHSIDLRNMMHLETLNIVECSLERVDPTFNGWTNFHNLHHLS 731 (863)
Q Consensus 654 ~~l~~~~~~~~~l~~-l~~~~~~~~~L~~L~l~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~ 731 (863)
....-.+........ ..........+..+.+...-. ...-.|.++..|+.+.+... +..+... .+..+++|+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~--aF~~c~~L~~i~ 294 (394)
T 4gt6_A 218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTG--AFMNCPALQDIE 294 (394)
T ss_dssp CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTT--TTTTCTTCCEEE
T ss_pred ccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCc--cccccccccccc
Confidence 000000000000000 000000011222222211100 00112677788888888655 3334322 455678888888
Q ss_pred EecCCCCCCC--cccccCCCcceEeeccCcchhhhhcccCCccccccCccCcccceeccc
Q 038405 732 IRVCPVIRDL--TWIREAPNLQFLSLVNCQALSEIIESAGSSEVAESHNYFAYLMVIDLD 789 (863)
Q Consensus 732 L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~L~~L~L~ 789 (863)
+... ++.+ ..+..+++|+.+.|..+ ++.|.. ..+.++.+|+.+.|-
T Consensus 295 l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~--------~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 295 FSSR--ITELPESVFAGCISLKSIDIPEG--ITQILD--------DAFAGCEQLERIAIP 342 (394)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECT--------TTTTTCTTCCEEEEC
T ss_pred CCCc--ccccCceeecCCCCcCEEEeCCc--ccEehH--------hHhhCCCCCCEEEEC
Confidence 8532 3333 34677888888888543 333321 244556667776663
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=5e-06 Score=77.92 Aligned_cols=86 Identities=12% Similarity=0.276 Sum_probs=41.4
Q ss_pred CcceeEeccCcccccCCCCCCCCCCCCCCEEEEecCCCCCCC--cccccC----CCcceEeeccCcchhhhhcccCCccc
Q 038405 700 HLETLNIVECSLERVDPTFNGWTNFHNLHHLSIRVCPVIRDL--TWIREA----PNLQFLSLVNCQALSEIIESAGSSEV 773 (863)
Q Consensus 700 ~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l--~~l~~l----~~L~~L~L~~~~~l~~i~~~~~~~~~ 773 (863)
.|++|++++|.+++.... .+..+++|+.|+|++|..+++- ..+..+ ++|++|+|++|..++.--
T Consensus 62 ~L~~LDLs~~~Itd~GL~--~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-------- 131 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD--HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-------- 131 (176)
T ss_dssp CEEEEEEESCCCCGGGGG--GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--------
T ss_pred eEeEEeCcCCCccHHHHH--HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--------
Confidence 466666666654443221 2234566666666666555442 223332 356666666665443310
Q ss_pred cccCccCcccceeccccccccc
Q 038405 774 AESHNYFAYLMVIDLDSLPSLK 795 (863)
Q Consensus 774 ~~~~~~~~~L~~L~L~~~~~L~ 795 (863)
......+++|+.|++++|++++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHhcCCCCCEEECCCCCCCC
Confidence 0112234555555555555544
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.87 E-value=0.00035 Score=77.16 Aligned_cols=168 Identities=15% Similarity=0.141 Sum_probs=92.7
Q ss_pred ccccchhhHHHHHHHhhc------------cCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKLDEVWGCIE------------DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
++++|.+..++.+.+.+. ....+-|.|+|++|+|||+||+.+++... . .-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---~----~~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---N----STFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---S----SEEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---C----CCEEEEeHHH---
Confidence 568899999998887762 12346789999999999999999998751 1 1233333221
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHHH-hccCcEEEEEccccccc-------------ccccccccCCC---CCC
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILIS-LRRKKFVLLLDDVWERL-------------DLSKTGVSLSD---CQN 283 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~~---~~~ 283 (863)
+.... .+ .. +.....+.+. -..++.+|++|+++... ....+...+.. ...
T Consensus 204 -l~~~~---~g--------~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 -LVSKW---LG--------ES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp --------------------C-CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred -HHhhh---cc--------hH-HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 11000 01 01 1112222222 23577899999997531 01111112211 234
Q ss_pred CeEEEEeecchhhh-------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCC-hHHHHHH
Q 038405 284 GSKIVFTTRSEEVC-------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGL-PLALITI 346 (863)
Q Consensus 284 gs~iivTTr~~~v~-------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 346 (863)
+..||.||...... +...+.++-..+|...+....... .......|++.+.|. +-.|..+
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 55666677654322 455566777778877664322111 145667888888885 4344443
No 196
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.86 E-value=0.00034 Score=75.85 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=64.2
Q ss_pred cccceEEEeccCCccccCCCC---CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccchhhhcccccceee
Q 038405 499 WREDFRLSLWGSSIEYLPETP---CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPAEMGALINLRCLN 575 (863)
Q Consensus 499 ~~~~~~l~l~~~~~~~l~~~~---~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 575 (863)
..+++.+.+. ..++.++... |.+|+.+.+..+ ++.++...|.++ .|..+.+..+ +..++...-...+|+.+.
T Consensus 45 ~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEEE
T ss_pred ccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCccccc
Confidence 3456666654 3455555543 677777777543 666666667666 4555555433 444444322234677777
Q ss_pred ccCCCccccchhhhcccCccEEecCCCCCccccchhhhcCCCCCceeeccC
Q 038405 576 LSNTSIEELPSEIMYLKNLKILLLDGMRHFHLIPARVFSSLLSLKVFSLFS 626 (863)
Q Consensus 576 L~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 626 (863)
+..+ +..+....-.-.+|+.+.+..+ +..+....+..+.+|..+.+..
T Consensus 120 lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred CCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 6553 3344333222234555555443 4445444566666666665543
No 197
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.85 E-value=0.00016 Score=76.68 Aligned_cols=160 Identities=13% Similarity=0.078 Sum_probs=95.1
Q ss_pred hhhHHHHHHHhhccCCc-eEEEEEcCCCChHHHHhhhhhhcccccc-------------------CCCCEEEEEEeC---
Q 038405 158 ADSKLDEVWGCIEDQSE-QTIGLYGMGGVGKITLLKKPNNKFLDVN-------------------HCFDLVIFVAVS--- 214 (863)
Q Consensus 158 r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~~~--- 214 (863)
.++..+.+...+..+.. ..+.++|+.|+||||+|+.+++...... .+++. .++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccC
Confidence 35566777777766554 5799999999999999999887652110 11221 222211
Q ss_pred CCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--ccccccccCCCCCCCeEEEEeec
Q 038405 215 KEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--DLSKTGVSLSDCQNGSKIVFTTR 292 (863)
Q Consensus 215 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTTr 292 (863)
....+..+ +++.+.+.... ..+++-++|+|+++... ....+...+.....++.+|++|.
T Consensus 86 ~~~~i~~i-r~l~~~~~~~~------------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEHA------------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSCC------------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred CCCCHHHH-HHHHHHHhhcc------------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 11111111 12222211110 12567899999998642 23334333433445677777777
Q ss_pred chhh-h-----------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHH
Q 038405 293 SEEV-C-----------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALIT 345 (863)
Q Consensus 293 ~~~v-~-----------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 345 (863)
+..- . +.+++.++..+.+..... -..+.+..+++.++|.|..+..
T Consensus 147 ~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--------~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 147 EPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--------MSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--------CCHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHHH
Confidence 6542 2 788999999988877651 1145668899999999976544
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.80 E-value=0.00037 Score=72.73 Aligned_cols=163 Identities=12% Similarity=0.158 Sum_probs=90.5
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL 219 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 219 (863)
.+++|.++.++++.+++.. ...+.|.|+|++|+|||+||+.+++.. ... ++.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~-----~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE-----EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC-----EEEEE----h
Confidence 4688999988888877632 345679999999999999999999876 222 22222 2
Q ss_pred HHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccccc----------------cccccccCC--CC
Q 038405 220 EKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERLD----------------LSKTGVSLS--DC 281 (863)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~ 281 (863)
..+..... +. ........+.......+.+|++|+++.... ...+...+. ..
T Consensus 83 ~~l~~~~~---g~--------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMWF---GE--------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHHH---TT--------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhhc---Cc--------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 23322221 11 111122223333345679999999974210 111111111 12
Q ss_pred CCCeEEEEeecchhhh---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHH
Q 038405 282 QNGSKIVFTTRSEEVC---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLA 342 (863)
Q Consensus 282 ~~gs~iivTTr~~~v~---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 342 (863)
..+..||.||...... +...+.++-.+++...........+.++ ..+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 3356677777654321 4556677777777766543322222222 3555667777643
No 199
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=2.7e-05 Score=78.86 Aligned_cols=82 Identities=26% Similarity=0.284 Sum_probs=59.9
Q ss_pred hcCCCccEEeccCCcCccc---cchhhhcccccceeeccCCCccccchhhhccc--CccEEecCCCCCccccc------h
Q 038405 542 ESMGALKVLDLSYNLDLTQ---LPAEMGALINLRCLNLSNTSIEELPSEIMYLK--NLKILLLDGMRHFHLIP------A 610 (863)
Q Consensus 542 ~~l~~L~~L~Ls~~~~i~~---lp~~i~~L~~L~~L~L~~~~i~~lP~~i~~L~--~L~~L~l~~~~~l~~lp------~ 610 (863)
..+++|+.|+|++| .+.. +|..++.+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 56788888888888 5554 446677888899999998888877 3355555 88999999888554444 2
Q ss_pred hhhcCCCCCceeecc
Q 038405 611 RVFSSLLSLKVFSLF 625 (863)
Q Consensus 611 ~~i~~L~~L~~L~l~ 625 (863)
.++..+++|+.|+-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 346778888888653
No 200
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=3.6e-05 Score=72.15 Aligned_cols=88 Identities=10% Similarity=0.119 Sum_probs=57.5
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccc-cchhhhcc----cccceeeccCC-Ccccc-chhhhccc
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQ-LPAEMGAL----INLRCLNLSNT-SIEEL-PSEIMYLK 592 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~~L----~~L~~L~L~~~-~i~~l-P~~i~~L~ 592 (863)
..+|+.|++++|.++...-..+..+++|+.|+|++|..++. --..++.+ ++|++|+|++| +|+.- -..+.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 34688888888876654444467788888888888855542 12234443 36888888887 56631 12356677
Q ss_pred CccEEecCCCCCccc
Q 038405 593 NLKILLLDGMRHFHL 607 (863)
Q Consensus 593 ~L~~L~l~~~~~l~~ 607 (863)
+|++|++++|..++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 888888887765543
No 201
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.71 E-value=5.4e-05 Score=80.94 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=57.4
Q ss_pred cceEEEeccCCccccCCCCCCCccEEEeecccccccchhhhh--cCCCccEEeccCCc-------Cccccchhh--hccc
Q 038405 501 EDFRLSLWGSSIEYLPETPCPHLQTLLVRFTVLEIFPHRFFE--SMGALKVLDLSYNL-------DLTQLPAEM--GALI 569 (863)
Q Consensus 501 ~~~~l~l~~~~~~~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~--~l~~L~~L~Ls~~~-------~i~~lp~~i--~~L~ 569 (863)
.++.|++.++.-..++....++|+.|.+..|.+..-....+. .+++|+.|+|+.+. .+..+...+ +.++
T Consensus 173 ~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p 252 (362)
T 2ra8_A 173 LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252 (362)
T ss_dssp TCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCT
T ss_pred CCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCC
Confidence 455666654421223322256666666665544322211222 45666666664210 011111112 2356
Q ss_pred ccceeeccCCCccc-cchhh---hcccCccEEecCCCCCccc-----cchhhhcCCCCCceeeccCcc
Q 038405 570 NLRCLNLSNTSIEE-LPSEI---MYLKNLKILLLDGMRHFHL-----IPARVFSSLLSLKVFSLFSTE 628 (863)
Q Consensus 570 ~L~~L~L~~~~i~~-lP~~i---~~L~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~ 628 (863)
+|++|+|++|.+.. .+..+ ..+++|++|+|+.|. +.. ++.+ +..+++|+.|+++.|.
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~-L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDH-VDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTT-HHHHTTCSEEECCSBB
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhh-cccCCcceEEECCCCc
Confidence 66666666665542 11122 235566666666554 222 2222 2345666666666553
No 202
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.69 E-value=3.5e-05 Score=74.12 Aligned_cols=109 Identities=14% Similarity=0.080 Sum_probs=77.7
Q ss_pred CCCccEEEeecc-cccccc----hhhhhcCCCccEEeccCCcCcc-----ccchhhhcccccceeeccCCCccc-----c
Q 038405 520 CPHLQTLLVRFT-VLEIFP----HRFFESMGALKVLDLSYNLDLT-----QLPAEMGALINLRCLNLSNTSIEE-----L 584 (863)
Q Consensus 520 ~~~Lr~L~l~~~-~l~~l~----~~~~~~l~~L~~L~Ls~~~~i~-----~lp~~i~~L~~L~~L~L~~~~i~~-----l 584 (863)
+++|++|++++| .+..-. ...+...+.|++|+|++| .+. .+...+...+.|++|+|++|.|.. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 577888888888 664321 123556788999999999 554 245556667889999999998874 5
Q ss_pred chhhhcccCccEEec--CCCCCccc----cchhhhcCCCCCceeeccCcchh
Q 038405 585 PSEIMYLKNLKILLL--DGMRHFHL----IPARVFSSLLSLKVFSLFSTELI 630 (863)
Q Consensus 585 P~~i~~L~~L~~L~l--~~~~~l~~----lp~~~i~~L~~L~~L~l~~~~~~ 630 (863)
...+...++|++|++ ++|..-.. +.. .+...++|++|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 677788889999999 77763221 222 2556688999999887653
No 203
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.67 E-value=3.6e-05 Score=75.27 Aligned_cols=113 Identities=19% Similarity=0.124 Sum_probs=61.7
Q ss_pred hHHHHHHHhhccC----CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcc
Q 038405 160 SKLDEVWGCIEDQ----SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDY 235 (863)
Q Consensus 160 ~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 235 (863)
..++.+.+++... ..+.+.|+|.+|+||||||+.+++... .....++|+++ ..+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~--- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV------PELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH------HHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh------HHHHHHHHHHhcc---
Confidence 3445555665432 126899999999999999999998872 22334566654 3444444432211
Q ss_pred cccccChhhHHHHHHHHhccCcEEEEEcccccc--ccccc--ccc-cCCC-CCCCeEEEEeecc
Q 038405 236 IWNMKGEYDRAVEILISLRRKKFVLLLDDVWER--LDLSK--TGV-SLSD-CQNGSKIVFTTRS 293 (863)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--~~~-~l~~-~~~gs~iivTTr~ 293 (863)
..... +.+.+... -+|||||++.. ..|.. +.. .+.. ...+.++|+||..
T Consensus 104 ----~~~~~----~~~~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ----QTMNE----KLDYIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCCHH----HHHHHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----chHHH----HHHHhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11122 22233333 38999999652 33321 211 1111 1245578888875
No 204
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.66 E-value=4.8e-05 Score=69.87 Aligned_cols=45 Identities=16% Similarity=0.292 Sum_probs=35.7
Q ss_pred cccchhhHHHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999988743 233457899999999999999999875
No 205
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.63 E-value=0.00034 Score=73.98 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=85.0
Q ss_pred HHHHHHhhccC--CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc
Q 038405 162 LDEVWGCIEDQ--SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNM 239 (863)
Q Consensus 162 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 239 (863)
...+..+...+ ....+.|+|++|+||||||+.+++... . ..+ .+++++. ..+...+...+..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~-~-~~~-~~~~i~~------~~~~~~~~~~~~~------- 86 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK-K-RGY-RVIYSSA------DDFAQAMVEHLKK------- 86 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH-H-TTC-CEEEEEH------HHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH-H-CCC-EEEEEEH------HHHHHHHHHHHHc-------
Confidence 34445555443 346789999999999999999998762 1 111 3345543 2333333333210
Q ss_pred cChhhHHHHHHHHhccCcEEEEEcccccccc---c-ccccccCCC-CCCCeEEEEeecchhhh-----------------
Q 038405 240 KGEYDRAVEILISLRRKKFVLLLDDVWERLD---L-SKTGVSLSD-CQNGSKIVFTTRSEEVC----------------- 297 (863)
Q Consensus 240 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~iivTTr~~~v~----------------- 297 (863)
.. ...+.+.+ .+.-+|++||+..... + ..+...+.. ...|..||+||....-.
T Consensus 87 ~~----~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 87 GT----INEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp TC----HHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred Cc----HHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 01 11122222 2467999999976431 1 222222211 12456788888644221
Q ss_pred --cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChH
Q 038405 298 --VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPL 341 (863)
Q Consensus 298 --l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 341 (863)
+.+ +.++..+++...+....... -.+....|++.+ |..-
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~l---~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLEL---RKEVIDYLLENT-KNVR 202 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHC-SSHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhC-CCHH
Confidence 666 88888888877764322111 155677788888 6653
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.63 E-value=2.7e-05 Score=74.57 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=63.2
Q ss_pred hhhHHHHHHHhhcc---CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCc
Q 038405 158 ADSKLDEVWGCIED---QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISD 234 (863)
Q Consensus 158 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 234 (863)
.+..++.+.+++.+ .....++|+|++|+||||||+.+++......+ + .+++++ ..++...+.......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g-~-~~~~~~------~~~~~~~~~~~~~~~- 89 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG-I-RGYFFD------TKDLIFRLKHLMDEG- 89 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC-C-CCCEEE------HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC-C-eEEEEE------HHHHHHHHHHHhcCc-
Confidence 44555555555543 34578999999999999999999987621111 1 223333 444544444333211
Q ss_pred ccccccChhhHHHHHHHHhccCcEEEEEccccc--ccccc--cccccCCC-CCCCeEEEEeecch
Q 038405 235 YIWNMKGEYDRAVEILISLRRKKFVLLLDDVWE--RLDLS--KTGVSLSD-CQNGSKIVFTTRSE 294 (863)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~~~~~l~~-~~~gs~iivTTr~~ 294 (863)
.... +.+.+. +.-+|||||++. ...|. .+...+.. ...|..||+||...
T Consensus 90 ------~~~~----~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 90 ------KDTK----FLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ------CCSH----HHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ------hHHH----HHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111 222222 456899999973 22232 11111111 12467888888753
No 207
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.51 E-value=0.00063 Score=75.64 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=40.5
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+++|||+++++.+...+......-+.|+|.+|+|||++|+.++...
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999976555667899999999999999999875
No 208
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.51 E-value=0.0025 Score=68.91 Aligned_cols=98 Identities=11% Similarity=0.103 Sum_probs=67.4
Q ss_pred CCCccEEEeecccccccchhhhhcCCCccEEeccCCcCccccch-hhhcccccceeeccCCCccccchhhhcccCccEEe
Q 038405 520 CPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYNLDLTQLPA-EMGALINLRCLNLSNTSIEELPSEIMYLKNLKILL 598 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~ 598 (863)
..+|+.+.+.. .++.++...|.++.+|+.++|..+ ++.++. .|.++ .|+.+.+.. +++.++...-...+|+.+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCccccc
Confidence 56788888864 478888899999999999999765 555554 45555 677777654 4666766544445899999
Q ss_pred cCCCCCccccchhhhcCCCCCceeecc
Q 038405 599 LDGMRHFHLIPARVFSSLLSLKVFSLF 625 (863)
Q Consensus 599 l~~~~~l~~lp~~~i~~L~~L~~L~l~ 625 (863)
+..+ +..+...++.+. +|..+.+.
T Consensus 120 lp~~--~~~i~~~~F~~~-~l~~~~~~ 143 (379)
T 4h09_A 120 FPGA--TTEIGNYIFYNS-SVKRIVIP 143 (379)
T ss_dssp CCTT--CCEECTTTTTTC-CCCEEEEC
T ss_pred CCCc--cccccccccccc-eeeeeecc
Confidence 8765 455655555544 55555544
No 209
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.47 E-value=0.00013 Score=74.89 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=35.5
Q ss_pred ccccchhhHHHHHHHhhcc------------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED------------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+++|.++.++.+.+.+.. ...+-+.|+|++|+|||+||+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 5688998887777766531 112347799999999999999999876
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.44 E-value=0.00013 Score=73.93 Aligned_cols=78 Identities=23% Similarity=0.197 Sum_probs=59.6
Q ss_pred CCCccEEEeecccccccch--hhhhcCCCccEEeccCCcCccccchhhhccc--ccceeeccCCCccc-cc-------hh
Q 038405 520 CPHLQTLLVRFTVLEIFPH--RFFESMGALKVLDLSYNLDLTQLPAEMGALI--NLRCLNLSNTSIEE-LP-------SE 587 (863)
Q Consensus 520 ~~~Lr~L~l~~~~l~~l~~--~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~--~L~~L~L~~~~i~~-lP-------~~ 587 (863)
+++|++|+|++|.+..++. ..+..+++|++|+|++| .+..+ ..+..+. +|++|+|++|.+.. +| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5678888888887776553 44678999999999999 77766 3355555 89999999998863 44 24
Q ss_pred hhcccCccEEec
Q 038405 588 IMYLKNLKILLL 599 (863)
Q Consensus 588 i~~L~~L~~L~l 599 (863)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678999999863
No 211
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00034 Score=74.51 Aligned_cols=160 Identities=16% Similarity=0.184 Sum_probs=88.7
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL 219 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 219 (863)
+++.|.++.+++|.+.+.- ...+=|.++|++|.|||.||+++++.. ...| +.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc-
Confidence 4567899988888876621 234558899999999999999999987 3332 3333321110
Q ss_pred HHHHHHHHHHcCCCcccccccChhhHHHHHHH-HhccCcEEEEEccccccc----------c------cccccccCC--C
Q 038405 220 EKIQEVIRKKLDISDYIWNMKGEYDRAVEILI-SLRRKKFVLLLDDVWERL----------D------LSKTGVSLS--D 280 (863)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------~------~~~~~~~l~--~ 280 (863)
. +.. ..+.....+.. .-...+++|++|+++... + ...+...+. .
T Consensus 221 -------------k---~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 -------------K---YIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp -------------S---STT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred -------------c---ccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 0 001 11222222222 223578999999987421 0 111111111 1
Q ss_pred CCCCeEEEEeecchhhh---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 281 CQNGSKIVFTTRSEEVC---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 281 ~~~gs~iivTTr~~~v~---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
...+-.||.||...... +..-+.++-.++|+.+........+.+ ...+++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 23344566677665543 444566666778877664433222223 456777887754
No 212
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.42 E-value=0.0018 Score=65.76 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=35.1
Q ss_pred ccccchhhHHHHHHHhh---cc---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCI---ED---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++|.+..++++.+.+ .. ...+-+.|+|++|+||||+|+.+++..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 56889988877766544 21 113458899999999999999999876
No 213
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.38 E-value=8.8e-05 Score=67.85 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=34.4
Q ss_pred cccchhhHHHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578999998888887743 333457799999999999999998765
No 214
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00044 Score=74.91 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=88.3
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL 219 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 219 (863)
+++.|.++.+++|.+.+.- ...+=|.++|++|.|||+||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 4567899888888776621 234668899999999999999999987 222 23344332110
Q ss_pred HHHHHHHHHHcCCCcccccccChhhHHHHHHH-HhccCcEEEEEccccccc--------c--------cccccccCC--C
Q 038405 220 EKIQEVIRKKLDISDYIWNMKGEYDRAVEILI-SLRRKKFVLLLDDVWERL--------D--------LSKTGVSLS--D 280 (863)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--------~--------~~~~~~~l~--~ 280 (863)
. +... .+.....+.. .-...+++|++|+++... . +..+...+. .
T Consensus 254 -------------k---~~Ge-se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 -------------K---YIGE-SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp -------------S---SSSH-HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred -------------c---cchH-HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 0 0111 1122222222 224578999999997421 0 111111111 1
Q ss_pred CCCCeEEEEeecchhhh---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 281 CQNGSKIVFTTRSEEVC---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 281 ~~~gs~iivTTr~~~v~---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
...+..||.||...... +..-+.++-.++|+.+........+.+ ...+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 22345677777765443 444456666677776654322222223 356677787754
No 215
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.33 E-value=0.00038 Score=83.79 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=40.7
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++||++++.++++.+......-+.++|.+|+||||+|+.+++..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999977666668899999999999999999875
No 216
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=0.00094 Score=69.38 Aligned_cols=138 Identities=17% Similarity=0.106 Sum_probs=80.2
Q ss_pred chhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcccccc-CCCCEEEEEEeCC-CCCHHHHHHHHHHHcCCCc
Q 038405 157 GADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVN-HCFDLVIFVAVSK-EGNLEKIQEVIRKKLDISD 234 (863)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 234 (863)
|-++.++.+...+..+..+.+.++|+.|+||||+|+.+++...... .+.+. .++..+. ...+..+ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 4456677788888776678899999999999999999987421011 23333 4444332 2333333 22333332211
Q ss_pred ccccccChhhHHHHHHHHhccCcEEEEEcccccc--cccccccccCCCCCCCeEEEEeecchhhh----------cccCC
Q 038405 235 YIWNMKGEYDRAVEILISLRRKKFVLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEEVC----------VECLS 302 (863)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~v~----------l~~L~ 302 (863)
..+++-++|+|+++.. .....+...+....+.+.+|++|.+..-. +.+++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~ 140 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNV 140 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCC
Confidence 1245778999999864 23344444443344577877777554311 66677
Q ss_pred HHHHHHHHhHhh
Q 038405 303 PEAALDLFRYKV 314 (863)
Q Consensus 303 ~~~a~~Lf~~~~ 314 (863)
+++..+.+....
T Consensus 141 ~~~i~~~L~~~~ 152 (305)
T 2gno_A 141 PKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777776666554
No 217
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00063 Score=72.67 Aligned_cols=46 Identities=28% Similarity=0.432 Sum_probs=36.7
Q ss_pred ccccchhhHHHHHHHhhc----c---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIE----D---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+++.|.++.+++|.+.+. . ...+=|.++|++|.|||.||+++++..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 456689988888877652 1 234668999999999999999999987
No 218
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00041 Score=75.13 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=37.3
Q ss_pred ccccchhhHHHHHHHhhc----c---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIE----D---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+++.|.++.+++|.+.+. . ...+=|.++|++|.|||.||+++++..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 456799999988887652 1 234668899999999999999999987
No 219
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00062 Score=73.49 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=37.1
Q ss_pred ccccchhhHHHHHHHhhc----c---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIE----D---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++.|.++.+++|.+.+. . ...+=|.++|++|.|||+||+++++..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 356789998888887652 1 345678899999999999999999987
No 220
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.29 E-value=0.0013 Score=73.14 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=89.4
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL 219 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 219 (863)
..++|.+..++++.+++.. ...+-|.|+|.+|+|||++|+.+++.. ... .+.++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~------ 271 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLING------ 271 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEc------
Confidence 4578999999999887742 334568999999999999999998875 222 233332
Q ss_pred HHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEcccccccc-------------cccccccCC--CCCCC
Q 038405 220 EKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERLD-------------LSKTGVSLS--DCQNG 284 (863)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~--~~~~g 284 (863)
. ++...+. ..........+.....+++.+|+||+++.... ...+...+. ....+
T Consensus 272 ~----~l~~~~~-------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 272 P----EIMSKLA-------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp H----HHHTSCT-------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred h----Hhhhhhc-------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 1 1111111 11111222233334456778999999953210 111111111 12234
Q ss_pred eEEEEeecchhhh---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCC
Q 038405 285 SKIVFTTRSEEVC---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGL 339 (863)
Q Consensus 285 s~iivTTr~~~v~---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 339 (863)
..||.||...... +...+.++-.+++...+.......+.. ..++++.+.|.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~ 406 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGH 406 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTC
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCC
Confidence 5566666654321 556677888888887764332222222 34566667664
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.27 E-value=0.0014 Score=77.89 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=40.7
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+++|||+++++++...|......-+.++|.+|+|||++|+.+++..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999977655668899999999999999998875
No 222
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.23 E-value=0.0019 Score=68.35 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=37.1
Q ss_pred ccccchhhHHHHHHHhhcc-----CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED-----QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.++|.+..++.+...+.. .....+.|+|++|+||||||+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5678988877777766643 234679999999999999999999876
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.18 E-value=0.0017 Score=71.43 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=86.2
Q ss_pred ccccchhhHHHHHHHhhc---cC---------CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 153 EKTVGADSKLDEVWGCIE---DQ---------SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
.+++|.++.++++.+.+. .. -.+-|.|+|++|+||||||+.+++.. ...| +.++.++-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 468899888777766542 11 12348899999999999999999876 2232 23333322110
Q ss_pred HHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc----------------ccccccccCC--CCC
Q 038405 221 KIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL----------------DLSKTGVSLS--DCQ 282 (863)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~--~~~ 282 (863)
+ ...........+.....+.+.+|+||+++... .+..+...+. ...
T Consensus 89 ---------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ---------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ---------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ---------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 00111112222333445678999999996521 0111111111 112
Q ss_pred CCeEEEEeecchhhh---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 283 NGSKIVFTTRSEEVC---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 283 ~gs~iivTTr~~~v~---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
.+..||.||...... +...+.++-.+++...+.......+.+ ...+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 355677777665432 344455566667766554322211112 344777787766
No 224
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.13 E-value=0.0003 Score=67.51 Aligned_cols=103 Identities=12% Similarity=0.024 Sum_probs=77.7
Q ss_pred ccceEEEeccC-Cccc-----cCCCC--CCCccEEEeecccccccc----hhhhhcCCCccEEeccCCcCccc-----cc
Q 038405 500 REDFRLSLWGS-SIEY-----LPETP--CPHLQTLLVRFTVLEIFP----HRFFESMGALKVLDLSYNLDLTQ-----LP 562 (863)
Q Consensus 500 ~~~~~l~l~~~-~~~~-----l~~~~--~~~Lr~L~l~~~~l~~l~----~~~~~~l~~L~~L~Ls~~~~i~~-----lp 562 (863)
..++.+++.+| .+.. +.... .++|++|++++|.+..-. ...+...+.|++|+|++| .+.. +.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHH
Confidence 36788899887 6643 22211 689999999999765422 123556789999999999 5553 56
Q ss_pred hhhhcccccceeec--cCCCccc-----cchhhhcccCccEEecCCCC
Q 038405 563 AEMGALINLRCLNL--SNTSIEE-----LPSEIMYLKNLKILLLDGMR 603 (863)
Q Consensus 563 ~~i~~L~~L~~L~L--~~~~i~~-----lP~~i~~L~~L~~L~l~~~~ 603 (863)
..+.....|++|+| ++|.|.. +...+...++|++|++++|.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 66778889999999 8898873 56667778999999999986
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0012 Score=71.49 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=37.2
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++.|.++.+++|.+.+.- ...+=|.++|++|.|||+||+++++..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567999988888876621 234568899999999999999999987
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.05 E-value=0.00097 Score=69.94 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=37.0
Q ss_pred cccchhhHHHHHHHhhccC---------CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCIEDQ---------SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|.+..++.+...+... ....+.++|.+|+||||+|+.++...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 4679999988888877441 13579999999999999999999876
No 227
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.01 E-value=0.003 Score=75.17 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=40.9
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++||+.+++++.+.|......-+.|+|.+|+||||+|+.+++..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999977666778899999999999999998865
No 228
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.77 E-value=0.0069 Score=67.08 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=35.8
Q ss_pred ccccchhhHHHHHHHhh---ccC--CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCI---EDQ--SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.++|.++.++.+..++ ... ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 57899998887655544 332 23568899999999999999999876
No 229
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.75 E-value=0.0086 Score=61.92 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+.+.++|++|+|||+||+.+++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999887
No 230
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.52 E-value=0.0086 Score=67.67 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=35.6
Q ss_pred ccccchhhHHHHHHHhhc------cCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIE------DQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+.+|.++..+.+.+.+. .....++.++|++|+||||||+.++...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 446788887777765442 1245689999999999999999999876
No 231
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.51 E-value=0.0023 Score=58.65 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-..++|+|..|+|||||++.++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 55789999999999999999999876
No 232
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.51 E-value=0.017 Score=63.93 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=34.6
Q ss_pred ccccchhhHHHHHHHhh---ccC---------CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCI---EDQ---------SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++|.++.+.++.+.. ... -.+-|.|+|++|+||||||+.++...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56889988777766554 221 11238999999999999999999876
No 233
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.50 E-value=0.018 Score=58.03 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=33.2
Q ss_pred ccccchhhHHHHHHHhhc---c---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIE---D---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++|.++.+.++.+... . .-.+-+.|+|++|+||||||+.++...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 467888877666655431 1 011228999999999999999999876
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.49 E-value=0.0099 Score=60.97 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=33.8
Q ss_pred ccccchhhHHHHHHHhhc---c---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIE---D---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++|.++.++++.+... . .-.+-+.|+|++|+||||||+.++...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 568898877766665442 1 011228999999999999999999876
No 235
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.48 E-value=0.0011 Score=68.06 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=45.8
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEe--CCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAV--SKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
-+++.|+|++|+||||||.+++... . . .++|++. .+.. ..- ..+.++....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G--~---~VlyIs~~~eE~v-------------~~~-----~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-G--G---KDKYATVRFGEPL-------------SGY-----NTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-H--T---TSCCEEEEBSCSS-------------TTC-----BCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-C--C---CEEEEEecchhhh-------------hhh-----hcCHHHHHHHHHH
Confidence 3567899999999999999998752 1 1 2346665 2221 100 1344556666777
Q ss_pred HhccCcEEEEEccccc
Q 038405 252 SLRRKKFVLLLDDVWE 267 (863)
Q Consensus 252 ~l~~k~~LlVlDdv~~ 267 (863)
.+...+ +||+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 777666 999999864
No 236
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.36 E-value=0.015 Score=69.05 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=37.4
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++|.+..++++.+++.. .....|.|+|.+|+||||||+.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4578999888888877732 234579999999999999999998875
No 237
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.35 E-value=0.0062 Score=71.13 Aligned_cols=161 Identities=14% Similarity=0.185 Sum_probs=86.7
Q ss_pred ccccchhhHHHHHHHhhc----c---------CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH
Q 038405 153 EKTVGADSKLDEVWGCIE----D---------QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL 219 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 219 (863)
+++.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+++++.. ..+ .+.|+.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~----- 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP----- 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhH-----
Confidence 346688888877777652 1 234568999999999999999999886 222 2333321
Q ss_pred HHHHHHHHHHcCCCcccccccChhhHHHHHHHHhccCcEEEEEccccccc--------c-----cccccccCC--CCCCC
Q 038405 220 EKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLRRKKFVLLLDDVWERL--------D-----LSKTGVSLS--DCQNG 284 (863)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~~~~~l~--~~~~g 284 (863)
++.... .......+...+....+..+.+|++|+++... + ...+...+. ....+
T Consensus 273 -----~l~sk~-------~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 273 -----EIMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -----HHHSSC-------TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred -----Hhhccc-------chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 111110 11112222222333345678999999997521 0 001111111 11223
Q ss_pred eEEEEeecchhhh---------------cccCCHHHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCCh
Q 038405 285 SKIVFTTRSEEVC---------------VECLSPEAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLP 340 (863)
Q Consensus 285 s~iivTTr~~~v~---------------l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 340 (863)
-.||.||...... +...+.++-.++|...........+.+ ...|++++.|.-
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 3455566544332 444566666777776664433222223 456777888764
No 238
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.31 E-value=0.012 Score=58.94 Aligned_cols=94 Identities=7% Similarity=0.010 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcccccc---CCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcc----c---ccccCh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVN---HCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDY----I---WNMKGE 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~ 242 (863)
.-.+++|+|.+|+|||||++.++....... ..-..++|+.....+....+. ++++.++.... . ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346899999999999999999887531100 123578999887766655443 34455554321 0 011222
Q ss_pred hh---HHHHHHHHhc-cCcEEEEEccccc
Q 038405 243 YD---RAVEILISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 243 ~~---~~~~l~~~l~-~k~~LlVlDdv~~ 267 (863)
.+ ....+.+.+. .+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22 2233444444 3677899999854
No 239
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.30 E-value=0.0085 Score=63.18 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (863)
.-+++.|+|.+|+||||||.+++.... . .-..++|++....++.. .++.++...... ...+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~-~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ-K--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 347999999999999999999987752 1 12357888887777654 445555443211 223445555555
Q ss_pred HHHhc-cCcEEEEEccccc
Q 038405 250 LISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 250 ~~~l~-~k~~LlVlDdv~~ 267 (863)
...++ .+.-++|+|.+..
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 54443 4556899999854
No 240
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.26 E-value=0.008 Score=59.11 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc-------ccccCh---
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI-------WNMKGE--- 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~--- 242 (863)
.-.++.|+|.+|+||||||..++. . .+ ..++|++....++...+.. +.+..+..... ....+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~---~~--~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L---SG--KKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H---HC--SEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H---cC--CcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 346899999999999999999987 2 11 4688888777666655543 44433321100 011122
Q ss_pred hhHHHHHHHHhccCcEEEEEccccc
Q 038405 243 YDRAVEILISLRRKKFVLLLDDVWE 267 (863)
Q Consensus 243 ~~~~~~l~~~l~~k~~LlVlDdv~~ 267 (863)
.+....++..++.+.-+||+|.+..
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 1233333333333467899998754
No 241
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.23 E-value=0.018 Score=60.38 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=58.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcccccc---CCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc-------ccccCh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVN---HCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI-------WNMKGE 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 242 (863)
.-.++.|+|.+|+||||||.+++....... ..-..++|++....++..++.+ +++.++..... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 346899999999999999999886541110 0124789999888887776653 45666554310 011222
Q ss_pred h---hHHHHHHHHhc--cCcEEEEEccccc
Q 038405 243 Y---DRAVEILISLR--RKKFVLLLDDVWE 267 (863)
Q Consensus 243 ~---~~~~~l~~~l~--~k~~LlVlDdv~~ 267 (863)
+ +....+...++ .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 2 23344455554 4567889998853
No 242
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.14 E-value=0.02 Score=58.45 Aligned_cols=87 Identities=10% Similarity=0.041 Sum_probs=56.8
Q ss_pred EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHHHHH
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEILIS 252 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 252 (863)
++-|+|.+|+||||||.+++.... ....-..++|++.-..++.. -+++++...... ...+.++....+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 689999999999999998877652 11113478999988887764 266777654321 223444441223333
Q ss_pred h----ccCcEEEEEcccccc
Q 038405 253 L----RRKKFVLLLDDVWER 268 (863)
Q Consensus 253 l----~~k~~LlVlDdv~~~ 268 (863)
+ .++.-+||+|-|...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 346789999998654
No 243
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.13 E-value=0.0082 Score=59.65 Aligned_cols=47 Identities=26% Similarity=0.206 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 225 (863)
-.+++|+|.+|+|||||++.++..... . -..++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~-~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR-D--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH-H--TCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-C--CCeEEEEEccc--CHHHHHHH
Confidence 468999999999999999999865521 1 12466665433 34444443
No 244
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.06 E-value=0.014 Score=61.81 Aligned_cols=87 Identities=15% Similarity=0.014 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (863)
.-+++.|.|.+|+||||||.+++.... . .-..++|++....++... +..++...... +..+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~-~--~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H--CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 457899999999999999999887652 1 123688999887776442 45555443211 112334444433
Q ss_pred HHHhc-cCcEEEEEccccc
Q 038405 250 LISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 250 ~~~l~-~k~~LlVlDdv~~ 267 (863)
....+ .+.-+||+|.+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 33332 4556899999854
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.03 E-value=0.025 Score=59.78 Aligned_cols=94 Identities=11% Similarity=0.056 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcccccc---CCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc-------ccccCh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVN---HCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI-------WNMKGE 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 242 (863)
.-.++.|+|.+|+||||||.+++....... +.-..++|++....++..++.. +++.++..... ....+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457899999999999999999887631100 0235789999888878776653 44555543210 011122
Q ss_pred h---hHHHHHHHHhc---cCcEEEEEccccc
Q 038405 243 Y---DRAVEILISLR---RKKFVLLLDDVWE 267 (863)
Q Consensus 243 ~---~~~~~l~~~l~---~k~~LlVlDdv~~ 267 (863)
+ +....+...++ .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 2 22333444443 4566888898754
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.02 E-value=0.022 Score=58.05 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=33.2
Q ss_pred ccccchhhHHHHHHHhhc----c---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIE----D---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++.|.++.++++.+.+. . .-.+=+.++|++|+||||||+.++...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 456788888887776541 1 111229999999999999999999875
No 247
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.96 E-value=0.0046 Score=64.35 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=30.4
Q ss_pred hhhHHHHHHHhhccC---CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 158 ADSKLDEVWGCIEDQ---SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 158 r~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+...++.+.+++... ....+.|+|.+|+|||+||+.+++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334445555666541 24678999999999999999999876
No 248
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.95 E-value=0.0084 Score=71.14 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=37.3
Q ss_pred ccccchhhHHHHHHHhhcc---------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED---------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999888887742 112369999999999999999999875
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.90 E-value=0.0055 Score=58.11 Aligned_cols=114 Identities=15% Similarity=0.061 Sum_probs=59.3
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC---CCHHHHHHHHHHHcCCCc------ccccccC----
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE---GNLEKIQEVIRKKLDISD------YIWNMKG---- 241 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~------~~~~~~~---- 241 (863)
..|-|++-.|.||||+|-...-+. .++=-.+.++.+.+. .....+ ++.++..- ..+...+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHHH
Confidence 456666666799999999888776 222234566655443 222333 33332110 0011111
Q ss_pred ---hhhHHHHHHHHhcc-CcEEEEEcccccc-----cccccccccCCCCCCCeEEEEeecchh
Q 038405 242 ---EYDRAVEILISLRR-KKFVLLLDDVWER-----LDLSKTGVSLSDCQNGSKIVFTTRSEE 295 (863)
Q Consensus 242 ---~~~~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~iivTTr~~~ 295 (863)
........++.+.+ +-=|||||++-.. ...+++...+........||+|+|...
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 11122334445544 4459999998542 222333333333445678999999854
No 250
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.90 E-value=0.0028 Score=62.14 Aligned_cols=114 Identities=11% Similarity=-0.036 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILIS 252 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (863)
.-.++.|+|..|+||||++..+.++.. .+-..++.+....+.. ....++..++............+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 346889999999999999998888762 2222344554333221 2224455555433222222333444444444
Q ss_pred hccCcE-EEEEcccccc--cccccccccCCCCCCCeEEEEeecchh
Q 038405 253 LRRKKF-VLLLDDVWER--LDLSKTGVSLSDCQNGSKIVFTTRSEE 295 (863)
Q Consensus 253 l~~k~~-LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTTr~~~ 295 (863)
+.+.++ +||+|.+..- ...+.+. .+.+ .|-.||+|-+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 433444 9999999642 2222221 1212 2678888888654
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.86 E-value=0.02 Score=60.83 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc---ccccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI---WNMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 249 (863)
.-+++.|+|.+|+||||||.+++.... . .-..++|++....++.. .++.++..... .+..+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~-~--~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ-K--AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH-H--CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 346889999999999999999887652 1 12368999988877654 24455554321 1223445555555
Q ss_pred HHHhc-cCcEEEEEccccc
Q 038405 250 LISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 250 ~~~l~-~k~~LlVlDdv~~ 267 (863)
....+ ++.-+||+|.+..
T Consensus 145 ~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHTTTCCSEEEEECTTT
T ss_pred HHHHhcCCCCEEEEeChHH
Confidence 54444 3456899999853
No 252
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.77 E-value=0.022 Score=60.26 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=55.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (863)
.-+++.|+|.+|+||||||.+++.... . .=..++|++....++.. .++.++...... ...+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~-~--~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ-A--AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h--CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457899999999999999999887652 1 12468899988777653 245555443211 122344444444
Q ss_pred HHHhc-cCcEEEEEccccc
Q 038405 250 LISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 250 ~~~l~-~k~~LlVlDdv~~ 267 (863)
....+ .+.-+||+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 43333 3566999999864
No 253
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.67 E-value=0.0089 Score=57.94 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=33.4
Q ss_pred chhhHHHHHHHhhcc---CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 157 GADSKLDEVWGCIED---QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 157 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|++.++++.+.+.. ....+|+|.|..|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677777777753 445799999999999999999988754
No 254
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.63 E-value=0.006 Score=63.95 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=53.7
Q ss_pred HHHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcc-cccccC
Q 038405 164 EVWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDY-IWNMKG 241 (863)
Q Consensus 164 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~ 241 (863)
++++.+.. ..-..++|+|.+|+|||||++.+.+........++ ++++-+++... + ..++.+.+....- ......
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~--E-v~~~~~~~~~~vV~atadep 238 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPE--E-VTEMQRLVKGEVVASTFDEP 238 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHH--H-HHHHHTTCSSEEEEECTTSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChH--H-HHHHHHHhCeEEEEeCCCCC
Confidence 34455533 44568999999999999999998876521122333 44677776532 1 1223333311000 000111
Q ss_pred hh------hHHHHHHHHh--ccCcEEEEEccccc
Q 038405 242 EY------DRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 242 ~~------~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
.. ..+..+.+++ +++.+||++||+-.
T Consensus 239 ~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 239 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 11 1112233444 47999999999864
No 255
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.56 E-value=0.14 Score=55.66 Aligned_cols=91 Identities=20% Similarity=0.150 Sum_probs=47.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHcCCCcccc-cccChhhHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE-GNLEKIQEVIRKKLDISDYIW-NMKGEYDRAVEIL 250 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 250 (863)
..++|.++|.+|+||||+|..++.... .... ..++.++.... ......+.......+...... ...+..+......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~-~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR-EKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH-HTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 457999999999999999999887762 2212 23455554432 223333333344444321100 1123444434344
Q ss_pred HHhccCc-EEEEEccc
Q 038405 251 ISLRRKK-FVLLLDDV 265 (863)
Q Consensus 251 ~~l~~k~-~LlVlDdv 265 (863)
+.++.+. =++|+|-.
T Consensus 177 ~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEECC
Confidence 4444223 36667764
No 256
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.44 E-value=0.013 Score=59.72 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=34.2
Q ss_pred ccccchhhHHHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.++|.+..+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3578999988888876642 233567899999999999999999875
No 257
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.42 E-value=0.0095 Score=62.16 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=37.6
Q ss_pred ccccchhhHHHHHHHhhcc--------------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED--------------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.+..++.+...+.. .....+.|+|.+|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999988877743 234568899999999999999999876
No 258
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.37 E-value=0.044 Score=57.45 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccc-----------cCCC--CEEEEEEeCCCCCHHHHHHHHHHHcCCCccc---
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDV-----------NHCF--DLVIFVAVSKEGNLEKIQEVIRKKLDISDYI--- 236 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 236 (863)
.-.++.|+|.+|+||||||.+++...... .+.. ..++|++....++..++.+ +++.++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 35789999999999999999987652100 0101 4789999888887777664 34555543210
Q ss_pred ----ccccChhh---HHHHHHHHhc--cCcEEEEEcccc
Q 038405 237 ----WNMKGEYD---RAVEILISLR--RKKFVLLLDDVW 266 (863)
Q Consensus 237 ----~~~~~~~~---~~~~l~~~l~--~k~~LlVlDdv~ 266 (863)
....+.++ ....+.+.++ .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 01122222 3334444444 345688888874
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.33 E-value=0.012 Score=57.36 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=30.5
Q ss_pred hHHHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 160 SKLDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 160 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.+++|.+.+.. ....+|+|+|..|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566666543 456799999999999999999998776
No 260
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.30 E-value=0.0025 Score=60.83 Aligned_cols=110 Identities=12% Similarity=-0.036 Sum_probs=52.5
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLR 254 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (863)
.++.|+|..|+||||++..++.+.. . ... .++++....+. ..-...+...++.........+..+ +.+.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~-~-~g~-~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~~~----~~~~~~ 74 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK-L-GKK-KVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERPEE----MRKYIE 74 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH-H-TTC-EEEEEEEC-------CCCEECC----CEECEEESSGGG----GGGGCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-H-CCC-eEEEEeecccc--ccCcccEEecCCCceeeEEECCHHH----HHHHhc
Confidence 5788999999999999977766541 1 122 23444332110 0000011111121111001112121 222333
Q ss_pred cCcEEEEEcccccc-cccccccccCCCCCCCeEEEEeecchh
Q 038405 255 RKKFVLLLDDVWER-LDLSKTGVSLSDCQNGSKIVFTTRSEE 295 (863)
Q Consensus 255 ~k~~LlVlDdv~~~-~~~~~~~~~l~~~~~gs~iivTTr~~~ 295 (863)
++.-+|++|.+... .+|.+....+.+. |..|++|.+..+
T Consensus 75 ~~~dvviIDE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPSLFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp TTEEEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEESBC
T ss_pred CCCCEEEEECcccCCHHHHHHHHHHHHC--CCCEEEEeeccc
Confidence 45569999999764 3444433322222 678998887543
No 261
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.24 E-value=0.061 Score=58.20 Aligned_cols=101 Identities=18% Similarity=0.269 Sum_probs=62.2
Q ss_pred HHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC-HHHHHHHHHHHcCCC------ccc
Q 038405 165 VWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN-LEKIQEVIRKKLDIS------DYI 236 (863)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~------~~~ 236 (863)
+++.|.. ..-.-++|+|.+|+|||+|+..+.+... +.+-+.++++-+++... +.++.+++.+.=... ...
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 4555533 3346789999999999999999988752 33456788888887643 556667776542221 100
Q ss_pred --ccccCh--------hhHHHHHHHHhc---cCcEEEEEccccc
Q 038405 237 --WNMKGE--------YDRAVEILISLR---RKKFVLLLDDVWE 267 (863)
Q Consensus 237 --~~~~~~--------~~~~~~l~~~l~---~k~~LlVlDdv~~ 267 (863)
....+. ...+..+.++++ ++.+||++||+-.
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 001111 112234455554 6899999999853
No 262
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.19 E-value=0.021 Score=50.67 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=35.3
Q ss_pred EEEeccCCcc--ccCCCCCCCccEEEeecccccccchhhhhcCCCccEEeccCC
Q 038405 504 RLSLWGSSIE--YLPETPCPHLQTLLVRFTVLEIFPHRFFESMGALKVLDLSYN 555 (863)
Q Consensus 504 ~l~l~~~~~~--~l~~~~~~~Lr~L~l~~~~l~~l~~~~~~~l~~L~~L~Ls~~ 555 (863)
++...++.++ .+|....++|+.|+|++|.+..++...|..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555556665 666555666777777777777777777777777777777766
No 263
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.08 E-value=0.086 Score=56.60 Aligned_cols=94 Identities=9% Similarity=0.021 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcccc---ccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCccc-------ccccCh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLD---VNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYI-------WNMKGE 242 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 242 (863)
.-.++.|+|.+|+|||||+..++-.... ....-..++|++....++...+. .+++.++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 3478999999999999999976532201 01133578999887776665543 366666653210 011122
Q ss_pred hh---HHHHHHHHhc-cCcEEEEEccccc
Q 038405 243 YD---RAVEILISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 243 ~~---~~~~l~~~l~-~k~~LlVlDdv~~ 267 (863)
.. ....+.+.+. .+.-+||+|.+-.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22 2223333333 3567888998754
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.06 E-value=0.062 Score=55.30 Aligned_cols=86 Identities=15% Similarity=0.080 Sum_probs=46.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSK-EGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILI 251 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (863)
...+|+|+|.+|+||||++..++.......+ ..+.++.... .....+.+....+..+.+.. ...+.......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 3579999999999999999998876621112 2345555432 12233334444444444321 1122333333333
Q ss_pred HhccCcEEEEEcc
Q 038405 252 SLRRKKFVLLLDD 264 (863)
Q Consensus 252 ~l~~k~~LlVlDd 264 (863)
.+ .+.=++|+|-
T Consensus 179 ~~-~~~dlvIiDT 190 (296)
T 2px0_A 179 LF-SEYDHVFVDT 190 (296)
T ss_dssp HG-GGSSEEEEEC
T ss_pred Hh-cCCCEEEEeC
Confidence 23 3445777883
No 265
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.99 E-value=0.018 Score=69.24 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=36.6
Q ss_pred cccchhhHHHHHHHhhccC---------CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCIEDQ---------SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|.+..++.+...+... ....+.|+|..|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999888888777431 23578999999999999999998875
No 266
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.96 E-value=0.086 Score=51.96 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcccc--ccC-CCCEEEEEEeCCCCCHHHHHHHHHHHcC
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLD--VNH-CFDLVIFVAVSKEGNLEKIQEVIRKKLD 231 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (863)
.-.+++|+|..|+|||||++.++..... ... .-..++|+.....+....+ ..+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i-~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHH-HHHHHHcC
Confidence 3478999999999999999999764311 011 2346788876655444332 33444443
No 267
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.96 E-value=0.021 Score=59.30 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=37.2
Q ss_pred ccccchhhHHHHHHHhhcc--CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED--QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3578999999998887744 334557799999999999999999865
No 268
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.90 E-value=0.012 Score=55.64 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999876
No 269
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.87 E-value=0.026 Score=50.04 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=25.0
Q ss_pred EEeccCCcCcc--ccchhhhcccccceeeccCCCccccchh-hhcccCccEEecCCCC
Q 038405 549 VLDLSYNLDLT--QLPAEMGALINLRCLNLSNTSIEELPSE-IMYLKNLKILLLDGMR 603 (863)
Q Consensus 549 ~L~Ls~~~~i~--~lp~~i~~L~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~l~~~~ 603 (863)
+++.++. .++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444444 444 4553322 2455555555555555443 3445555555555543
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.83 E-value=0.013 Score=55.03 Aligned_cols=24 Identities=25% Similarity=0.092 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998875
No 271
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.83 E-value=0.14 Score=54.13 Aligned_cols=154 Identities=9% Similarity=-0.060 Sum_probs=90.4
Q ss_pred HHHhhccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhh
Q 038405 165 VWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYD 244 (863)
Q Consensus 165 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 244 (863)
+.+.+...-.++..++|..|.||++.|..+..... ...|+....+.+....++.++...+..
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------- 70 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQA---------------- 70 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHH----------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcC----------------
Confidence 33444434457899999999999999999887652 223443222333333344333322211
Q ss_pred HHHHHHHHhccCcEEEEEccccc---ccccccccccCCCCCCCeEEEEeecch-------hhh-----------cccCCH
Q 038405 245 RAVEILISLRRKKFVLLLDDVWE---RLDLSKTGVSLSDCQNGSKIVFTTRSE-------EVC-----------VECLSP 303 (863)
Q Consensus 245 ~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~gs~iivTTr~~-------~v~-----------l~~L~~ 303 (863)
.-+-+++-++|+|++.. ...+..+...+.....++.+|++|... .+. ..+++.
T Consensus 71 ------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~ 144 (343)
T 1jr3_D 71 ------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQ 144 (343)
T ss_dssp ------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCT
T ss_pred ------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCH
Confidence 11345677888999865 234455544444444577777766431 111 567788
Q ss_pred HHHHHHHhHhhCccccCCCCChHHHHHHHHHHcCCChHHHHH
Q 038405 304 EAALDLFRYKVGEDVFNSHPEIPTLAQAVVGECKGLPLALIT 345 (863)
Q Consensus 304 ~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 345 (863)
++........+....... ..+.+..+++.++|.+.++..
T Consensus 145 ~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 145 AQLPRWVAARAKQLNLEL---DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp THHHHHHHHHHHHTTCEE---CHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhchHHHHHHH
Confidence 887777766653222111 156788888999998876664
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.81 E-value=0.013 Score=55.19 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=18.9
Q ss_pred eEEEEEcCCCChHHHHhhhh
Q 038405 175 QTIGLYGMGGVGKITLLKKP 194 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v 194 (863)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 273
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.79 E-value=0.062 Score=56.79 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=54.0
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccc--cccCCC-CEEEEEEeCCCCCHHHHHHHHHHHcCCCccc-------ccc--
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFL--DVNHCF-DLVIFVAVSKEGNLEKIQEVIRKKLDISDYI-------WNM-- 239 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~-- 239 (863)
..-.++.|+|..|+|||||+..++.... ...+.. ..++|++....+...++ ..+++..+..... ...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 3457999999999999999999886541 001111 34589987666544443 3344444432110 001
Q ss_pred -cChhhHHHHHHHHhc------cCcEEEEEccccc
Q 038405 240 -KGEYDRAVEILISLR------RKKFVLLLDDVWE 267 (863)
Q Consensus 240 -~~~~~~~~~l~~~l~------~k~~LlVlDdv~~ 267 (863)
....+....+...++ .+.-+||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 111223334444443 3677899998754
No 274
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.75 E-value=0.083 Score=54.34 Aligned_cols=89 Identities=17% Similarity=0.076 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCcccc-cccChhhHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIW-NMKGEYDRAVEILI 251 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 251 (863)
..+|+++|.+|+||||++..++.... . .-..+.++...... ...+.+....+..+.+.... ...+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~-~--~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK-K--KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH-H--TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H--CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 57899999999999999999887762 1 11245555543222 22233344455554432110 12344444444445
Q ss_pred HhccCcE-EEEEccc
Q 038405 252 SLRRKKF-VLLLDDV 265 (863)
Q Consensus 252 ~l~~k~~-LlVlDdv 265 (863)
.++.++| ++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 5542333 6777764
No 275
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.63 E-value=0.016 Score=55.97 Aligned_cols=26 Identities=38% Similarity=0.301 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|.|+|+.|+||||+|+.++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999775
No 276
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.57 E-value=0.018 Score=55.15 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+|+|+|+.|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998753
No 277
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.57 E-value=0.055 Score=58.71 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=51.7
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC-HHHHHHHHHHHcCCCcc----cccccChhh-----
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN-LEKIQEVIRKKLDISDY----IWNMKGEYD----- 244 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~----~~~~~~~~~----- 244 (863)
..++|+|.+|+|||||++.+..... ...-+.++++-+++..+ ..++..++.+.-..... ......+..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 4689999999999999999987752 12224556777776643 44555545432100000 000111111
Q ss_pred -HHHHHHHHh---ccCcEEEEEccccc
Q 038405 245 -RAVEILISL---RRKKFVLLLDDVWE 267 (863)
Q Consensus 245 -~~~~l~~~l---~~k~~LlVlDdv~~ 267 (863)
....+.+++ +++++||++||+-.
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 112344444 47899999999853
No 278
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.56 E-value=0.025 Score=55.76 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=31.0
Q ss_pred hhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 159 DSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 159 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++..+.+...+......+|.|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344555555555677899999999999999999988764
No 279
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.56 E-value=0.095 Score=56.57 Aligned_cols=88 Identities=15% Similarity=0.068 Sum_probs=48.1
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHH--HHHHHHHcCCCcccc-cccChhhHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKI--QEVIRKKLDISDYIW-NMKGEYDRAVEIL 250 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~--~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 250 (863)
..+|+|+|.+|+||||++..++.... ..-..+..+.. +.+..... +....+..+.+.... ...++.+.+....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 47899999999999999999988762 22223444544 34443322 334445555432110 1123344434344
Q ss_pred HHhccCcE-EEEEccc
Q 038405 251 ISLRRKKF-VLLLDDV 265 (863)
Q Consensus 251 ~~l~~k~~-LlVlDdv 265 (863)
+.++.+.| ++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 44433334 6677743
No 280
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.54 E-value=0.16 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 35799999999999999999988776
No 281
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.49 E-value=0.018 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
-++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998754
No 282
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.44 E-value=0.034 Score=58.05 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=32.4
Q ss_pred cchhhHHHHHHHhhc----cCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 156 VGADSKLDEVWGCIE----DQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 156 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|+.+...+++++.+. .+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 445556666666653 3556679999999999999999888765
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.44 E-value=0.015 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|+|+|+.|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998865
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.41 E-value=0.019 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHhhhhhh
Q 038405 175 QTIGLYGMGGVGKITLLKKPNN 196 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~ 196 (863)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999987
No 285
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.41 E-value=0.021 Score=60.20 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=37.1
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.++|+++.++.+...+... .-+.++|.+|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 35789999999888887653 358899999999999999998876
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.37 E-value=0.019 Score=54.62 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+.|.|+|+.|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998775
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.32 E-value=0.024 Score=54.83 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....+|+|+|++|+||||+|+.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998876
No 288
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.30 E-value=0.08 Score=57.51 Aligned_cols=100 Identities=17% Similarity=0.257 Sum_probs=62.4
Q ss_pred HHhhcc-CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC-HHHHHHHHHHHcCCC-------ccc
Q 038405 166 WGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN-LEKIQEVIRKKLDIS-------DYI 236 (863)
Q Consensus 166 ~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~ 236 (863)
++.|.. ..-.-++|+|..|+|||+|+..+.+... +.+-+.++++-+++... ..++.+++.+.=... ...
T Consensus 156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred eeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 444432 3345689999999999999999988752 34457888988887754 566677776542221 000
Q ss_pred --ccccC--------hhhHHHHHHHHhc---cCcEEEEEccccc
Q 038405 237 --WNMKG--------EYDRAVEILISLR---RKKFVLLLDDVWE 267 (863)
Q Consensus 237 --~~~~~--------~~~~~~~l~~~l~---~k~~LlVlDdv~~ 267 (863)
....+ ....+..+.++++ ++.+||++||+-.
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00111 1122334556664 5899999999853
No 289
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.29 E-value=0.093 Score=54.13 Aligned_cols=89 Identities=17% Similarity=0.133 Sum_probs=48.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHH--HHHHHHHHcCCCcccc-cccChhhH-HHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEK--IQEVIRKKLDISDYIW-NMKGEYDR-AVE 248 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~~~-~~~~~~~~-~~~ 248 (863)
...+|+|+|.+|+||||++..++.... .. -..+.++.. +.+.... -+...++..+.+.... ...+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~--g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV-DE--GKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-HT--TCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH-hc--CCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 357999999999999999999987762 21 123445543 3333322 2234455555432110 11122222 123
Q ss_pred HHHHhccCcEEEEEccc
Q 038405 249 ILISLRRKKFVLLLDDV 265 (863)
Q Consensus 249 l~~~l~~k~~LlVlDdv 265 (863)
+...+....-++|+|-.
T Consensus 179 l~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHhcCCCEEEEECC
Confidence 44444445557888865
No 290
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.29 E-value=0.022 Score=55.07 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345789999999999999999998764
No 291
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.28 E-value=0.079 Score=52.86 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=32.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEV 225 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 225 (863)
-.++.|.|.+|+||||||.+++..... .-..++|++.... ..++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSSC--HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccCC--HHHHHHH
Confidence 468999999999999999888765411 1235778775543 3444433
No 292
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.23 E-value=0.025 Score=55.60 Aligned_cols=42 Identities=12% Similarity=0.278 Sum_probs=32.7
Q ss_pred chhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 157 GADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.++..+++...+.....++|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555566666655678899999999999999999988765
No 293
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.19 E-value=0.068 Score=62.45 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=35.5
Q ss_pred ccccchhhHHHHHHHhhcc-------------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED-------------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++.|.++.++++.+.+.- ...+-|.++|++|.|||.+|+++++..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence 4566888888888776521 123447899999999999999999986
No 294
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.13 E-value=0.018 Score=55.69 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998775
No 295
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.13 E-value=0.037 Score=61.31 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=36.6
Q ss_pred cccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|++..++.+...+..+ .-|.|+|.+|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 4789999998888777554 368899999999999999999876
No 296
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.11 E-value=0.21 Score=52.04 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=35.6
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHcCC
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSK-EGNLEKIQEVIRKKLDI 232 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 232 (863)
....+++|+|+.|+||||+++.++.... . .. ..+.++...- .....+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-~-~~-g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-N-HG-FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH-H-TT-CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-h-cC-CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 3467999999999999999999987762 1 22 2344443321 12233344455556654
No 297
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.05 E-value=0.039 Score=56.57 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999988766
No 298
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.04 E-value=0.025 Score=52.86 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998875
No 299
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.04 E-value=0.15 Score=53.12 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=37.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
.-.++.|.|.+|+||||+|..++.... ..+ ..++|++.- .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999999887652 222 578887755 4566666666554
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.03 E-value=0.026 Score=53.09 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998754
No 301
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.99 E-value=0.029 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|.|.|++|+||||+++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998876
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.99 E-value=0.023 Score=54.36 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999876
No 303
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.97 E-value=0.026 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNN 196 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~ 196 (863)
.-.+++|+|..|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999997543
No 304
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.94 E-value=0.025 Score=54.08 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 305
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.93 E-value=0.039 Score=58.96 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=36.1
Q ss_pred cccchhhHHHHHHHhhc-------------c--CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCIE-------------D--QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|.+..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 36899988888887772 1 134568999999999999999999876
No 306
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.92 E-value=0.022 Score=53.90 Aligned_cols=25 Identities=44% Similarity=0.375 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|.|+|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998765
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.91 E-value=0.03 Score=54.42 Aligned_cols=26 Identities=31% Similarity=0.185 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 308
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.91 E-value=0.028 Score=58.34 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=28.8
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCC
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSK 215 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 215 (863)
++.+||+|.|-|||||||.|..++.-.. ..+ ..+.-|....
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA-~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS-ILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH-HTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH-HCC--CeEEEEecCC
Confidence 4679999999999999998887776552 111 2356666553
No 309
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.87 E-value=0.031 Score=54.13 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999988754
No 310
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.86 E-value=0.029 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHhhhhhhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
.+++|+|+.|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999753
No 311
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.85 E-value=0.026 Score=54.74 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998765
No 312
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.85 E-value=0.027 Score=56.63 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|.|+|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998765
No 313
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.81 E-value=0.024 Score=54.01 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998665
No 314
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.80 E-value=0.031 Score=53.49 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 315
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.80 E-value=0.032 Score=53.01 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999876
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.75 E-value=0.028 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 317
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.74 E-value=0.025 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.|.|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998876
No 318
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.73 E-value=0.25 Score=53.40 Aligned_cols=26 Identities=31% Similarity=0.252 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999988776
No 319
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.72 E-value=0.034 Score=53.99 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|+|+|.+|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999987654
No 320
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.71 E-value=0.026 Score=60.01 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=34.3
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.++|.+..++.+..........-|.|+|.+|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4588998866655444433233348899999999999999999865
No 321
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.70 E-value=0.035 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|+|.|+.|+||||+|+.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 322
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.69 E-value=0.032 Score=54.31 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|+|+|..|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 323
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.68 E-value=0.032 Score=52.61 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|+|..|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999888665
No 324
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.68 E-value=0.035 Score=53.80 Aligned_cols=25 Identities=36% Similarity=0.254 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999988764
No 325
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.63 E-value=0.03 Score=54.17 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHhhhhhh
Q 038405 175 QTIGLYGMGGVGKITLLKKPNN 196 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~ 196 (863)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 326
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.61 E-value=0.036 Score=51.46 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998876
No 327
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.61 E-value=0.051 Score=58.39 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=34.7
Q ss_pred cccchhhHHHHHHHhhc------------------------------cCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 154 KTVGADSKLDEVWGCIE------------------------------DQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 154 ~~vGr~~~~~~l~~~L~------------------------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|.+..++.+...+. ......+.++|++|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 46788888887776662 0123468899999999999999999876
No 328
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.60 E-value=0.025 Score=53.71 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999998865
No 329
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.58 E-value=0.03 Score=55.22 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 330
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.55 E-value=0.033 Score=53.40 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|.|.|+.|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 331
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.55 E-value=0.037 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
...+|+|+|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999998764
No 332
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.54 E-value=0.035 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHhhhhhh
Q 038405 175 QTIGLYGMGGVGKITLLKKPNN 196 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~ 196 (863)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 333
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.48 E-value=0.03 Score=53.05 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|.|.|+|++|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999988765
No 334
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.46 E-value=0.036 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 335
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.42 E-value=0.039 Score=55.49 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998764
No 336
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.41 E-value=0.031 Score=52.43 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.41 E-value=0.036 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..|+|.|+.|+||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 338
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.40 E-value=0.048 Score=57.63 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=59.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILIS 252 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (863)
...+++|+|+.|+||||+.+.+..... .. .-..++.+. ++.... .. .....-...............+...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~-~~-~~~~i~t~e--d~~e~~--~~---~~~~~v~q~~~~~~~~~~~~~La~a 192 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN-NT-KYHHILTIE--DPIEFV--HE---SKKCLVNQREVHRDTLGFSEALRSA 192 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH-HH-CCCEEEEEE--SSCCSC--CC---CSSSEEEEEEBTTTBSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc-CC-CCcEEEEcc--CcHHhh--hh---ccccceeeeeeccccCCHHHHHHHH
Confidence 445999999999999999999876551 11 011222222 221100 00 0000000000111223445578888
Q ss_pred hccCcEEEEEcccccccccccccccCCCCCCCeEEEEeecch
Q 038405 253 LRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSE 294 (863)
Q Consensus 253 l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~ 294 (863)
|...+=+|++|.+-+...+..+.... ..|.-||+||-..
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~ 231 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTT 231 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCS
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccC
Confidence 88889999999998665544432221 2355688888654
No 339
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.39 E-value=0.031 Score=53.84 Aligned_cols=25 Identities=40% Similarity=0.476 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999987654
No 340
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.38 E-value=0.039 Score=55.29 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|+|+|+.|+|||||++.++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999655
No 341
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.36 E-value=0.04 Score=52.66 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998763
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.32 E-value=0.036 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|+|.|+.|+||||+|+.+....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998875
No 343
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.32 E-value=0.053 Score=51.58 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=27.8
Q ss_pred HHHHHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 162 LDEVWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 162 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+..+..++.. +....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455555543 233479999999999999999998876
No 344
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.28 E-value=0.14 Score=65.45 Aligned_cols=87 Identities=15% Similarity=0.032 Sum_probs=57.1
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHH
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVE 248 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~ 248 (863)
..-++|-|+|++|+|||+||.++.... ...=..++|+++...++... ++.++...... .....++....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1496 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHH
Confidence 345789999999999999999998775 22234678888888877666 44555321111 12233444444
Q ss_pred HHHHhc-cCcEEEEEcccc
Q 038405 249 ILISLR-RKKFVLLLDDVW 266 (863)
Q Consensus 249 l~~~l~-~k~~LlVlDdv~ 266 (863)
+....+ .+.-+||+|.+.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 444443 467799999995
No 345
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.28 E-value=0.19 Score=51.70 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=47.3
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHH--HHHHHHHHcCCCcccc-cccChhhHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEK--IQEVIRKKLDISDYIW-NMKGEYDRAVEIL 250 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 250 (863)
..+++|+|.+|+||||++..++.... .. -..+.++... ...... .+..+.+..+...... ...++.++.....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~-~~--~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK-GK--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH-HT--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999999987762 11 1234455433 222222 1233444444432110 1123444433333
Q ss_pred HHh-ccCcEEEEEccc
Q 038405 251 ISL-RRKKFVLLLDDV 265 (863)
Q Consensus 251 ~~l-~~k~~LlVlDdv 265 (863)
..+ ....=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 333 244457788865
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.26 E-value=0.041 Score=52.51 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999988764
No 347
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.21 E-value=0.061 Score=55.18 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 348
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.19 E-value=0.044 Score=55.41 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 349
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.17 E-value=0.099 Score=56.20 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=54.1
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCC----EEEEEEeCCCC-CHHHHHHHHHHHcCCCccc--c--cccChh--
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFD----LVIFVAVSKEG-NLEKIQEVIRKKLDISDYI--W--NMKGEY-- 243 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~----~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~--~--~~~~~~-- 243 (863)
.-++|+|..|+|||+|+.++++.. ..+-+ .++++-+++.. .+.++.+++.+.=...... . ......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~---~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA---TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC---BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH---HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 447899999999999999998876 22223 67777777654 3556666654431111000 0 011111
Q ss_pred ----hHHHHHHHHhc---cCcEEEEEccccc
Q 038405 244 ----DRAVEILISLR---RKKFVLLLDDVWE 267 (863)
Q Consensus 244 ----~~~~~l~~~l~---~k~~LlVlDdv~~ 267 (863)
..+..+.++++ ++.+||++||+-.
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 12234566664 6899999999853
No 350
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.17 E-value=0.4 Score=52.91 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|+|+|.+|+||||++..++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998766
No 351
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.16 E-value=0.041 Score=53.55 Aligned_cols=24 Identities=21% Similarity=0.262 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 352
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.15 E-value=0.047 Score=56.67 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....+|+|+|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345799999999999999999988765
No 353
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.15 E-value=0.042 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 354
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.15 E-value=0.046 Score=53.21 Aligned_cols=27 Identities=33% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+||.|.|++|+||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999876
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.08 E-value=0.043 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 356
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.06 E-value=0.045 Score=53.13 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999988765
No 357
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.05 E-value=0.044 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.05 E-value=0.031 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=18.3
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998765
No 359
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.02 E-value=0.071 Score=55.28 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|||.|..|+||||+|+.+..-.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999987665
No 360
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.99 E-value=0.044 Score=52.92 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|.|.|+.|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 361
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.99 E-value=0.053 Score=54.24 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....+|+|.|..|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999987753
No 362
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.97 E-value=0.53 Score=49.04 Aligned_cols=52 Identities=13% Similarity=-0.015 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKK 229 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (863)
.-.++.|.|.+|+||||+|..++.... . .=..++|++. .-+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a-~--~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSAL-N--DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH-H--TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H--cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 346899999999999999999988762 1 2246777665 34566776666554
No 363
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.92 E-value=0.052 Score=54.58 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|+|+|+.|+||||+++.++...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998765
No 364
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.85 E-value=0.058 Score=54.23 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998765
No 365
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.84 E-value=0.082 Score=52.73 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.....|+|.|++|+||||+|+.+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998765
No 366
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.83 E-value=0.061 Score=49.46 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|..|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445799999999999999999988754
No 367
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.82 E-value=0.058 Score=58.44 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=35.8
Q ss_pred ccccchhhHHHHHHHhhcc--------------CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIED--------------QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.++.++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578988888887766622 123558899999999999999999876
No 368
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.81 E-value=0.1 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 369
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.73 E-value=0.048 Score=53.44 Aligned_cols=26 Identities=42% Similarity=0.522 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999988754
No 370
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.72 E-value=2 Score=47.06 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIR 227 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (863)
.-.++.|.|.+|+||||||..++.... .. .-..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~-~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVA-TK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHH-HH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-Hh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 346899999999999999999887762 11 112577776543 3456665554
No 371
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.71 E-value=0.054 Score=53.13 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...|.|.|+.|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998876
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.63 E-value=0.052 Score=52.82 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999876
No 373
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.62 E-value=0.42 Score=50.09 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=35.2
Q ss_pred HHHHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC
Q 038405 163 DEVWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE 216 (863)
Q Consensus 163 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 216 (863)
-++++.+.. ..-.-++|+|.+|+|||+|+..+.+........+. ++++-+++.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 356666644 34467899999999999999998886521112333 356666654
No 374
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.58 E-value=0.058 Score=52.06 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998765
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.58 E-value=0.053 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 376
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.55 E-value=0.054 Score=53.47 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998765
No 377
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.53 E-value=0.04 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999988766
No 378
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.53 E-value=0.061 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 379
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.51 E-value=0.058 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 380
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.50 E-value=0.064 Score=52.46 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999988765
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.47 E-value=0.031 Score=54.55 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|+|.|..|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998766
No 382
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.46 E-value=0.35 Score=52.50 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCChHHHHh-hhhhhccccccCCCCEEEEEEeCCCCC-HHHHHHHHHHHcCCCcccc--c--ccChh----
Q 038405 174 EQTIGLYGMGGVGKITLL-KKPNNKFLDVNHCFDLVIFVAVSKEGN-LEKIQEVIRKKLDISDYIW--N--MKGEY---- 243 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~--~--~~~~~---- 243 (863)
-.-++|.|..|+|||+|| ..+.+.. +.-..++++-+++... +.++.+.+.+.=....... . .....
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 356899999999999997 4566542 2223467888887643 5566666554321111000 0 11111
Q ss_pred --hHHHHHHHHh--ccCcEEEEEccccc
Q 038405 244 --DRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 244 --~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
.....+.+++ +++.+||++||+-.
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 1122344554 47999999999854
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.42 E-value=0.065 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
-.+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998765
No 384
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.30 E-value=0.068 Score=55.14 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|+|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999998776
No 385
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.26 E-value=0.066 Score=55.70 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998875
No 386
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.23 E-value=0.2 Score=52.44 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=48.9
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccChhhHHHHHHHHhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEILISLR 254 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (863)
.+++|+|..|+|||||++.+..-.. .-...+.+.-........ .. ..-..-..........+...|.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~----~~~g~i~i~~~~e~~~~~--------~~-~~i~~~~ggg~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP----KEERIISIEDTEEIVFKH--------HK-NYTQLFFGGNITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC----TTSCEEEEESSCCCCCSS--------CS-SEEEEECBTTBCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc----CCCcEEEECCeecccccc--------ch-hEEEEEeCCChhHHHHHHHHhh
Confidence 5899999999999999999987651 123455554222111000 00 0000000022334455667777
Q ss_pred cCcEEEEEcccccccccc
Q 038405 255 RKKFVLLLDDVWERLDLS 272 (863)
Q Consensus 255 ~k~~LlVlDdv~~~~~~~ 272 (863)
.++=+|++|.+-....++
T Consensus 239 ~~p~ilildE~~~~e~~~ 256 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYD 256 (330)
T ss_dssp SCCSEEEECCCCSTHHHH
T ss_pred hCCCEEEEcCCChHHHHH
Confidence 888889999987654443
No 387
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.23 E-value=0.069 Score=54.59 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPN 195 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~ 195 (863)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999987
No 388
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.22 E-value=0.058 Score=51.34 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+++|+|..|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999988766
No 389
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.13 E-value=0.059 Score=52.96 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...|.|.|++|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998876
No 390
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.12 E-value=0.075 Score=52.79 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.. .+++|+|+.|+|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 56 899999999999999999998654
No 391
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.11 E-value=0.14 Score=58.78 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=37.7
Q ss_pred ccccchhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|.+..++.+...+... ..+.|+|.+|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 56789998888888777655 578999999999999999999876
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.10 E-value=0.081 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHhhhhhh
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNN 196 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~ 196 (863)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 393
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.10 E-value=0.07 Score=51.94 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....+|.|.|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998765
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.09 E-value=0.059 Score=53.81 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
-.+|+|+|+.|+||||+++.++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998865
No 395
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.04 E-value=0.079 Score=49.59 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++++|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999988765
No 396
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.87 E-value=0.11 Score=53.77 Aligned_cols=43 Identities=21% Similarity=0.364 Sum_probs=30.4
Q ss_pred cCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCC
Q 038405 171 DQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKE 216 (863)
Q Consensus 171 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 216 (863)
....++|+|+|-||+||||+|..++.... ..+ ..++-|.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La-~~G--~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFS-ILG--KRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH-HTT--CCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHH-HCC--CeEEEEeCCCC
Confidence 34678999999999999999998887762 211 24666666543
No 397
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.86 E-value=0.21 Score=52.95 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=28.2
Q ss_pred HHHHHHhhc--cCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 162 LDEVWGCIE--DQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 162 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++.+.+. .....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444443 3567899999999999999999987665
No 398
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.85 E-value=0.088 Score=52.14 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|+.|+|||||.+.+..-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345689999999999999999988654
No 399
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.84 E-value=0.076 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhh
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNN 196 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~ 196 (863)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 347899999999999999998883
No 400
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.83 E-value=0.075 Score=52.25 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 401
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.83 E-value=0.054 Score=53.63 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=16.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhh-hcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPN-NKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 198 (863)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 543
No 402
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.82 E-value=0.08 Score=51.24 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998865
No 403
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.77 E-value=0.076 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 404
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.71 E-value=0.26 Score=53.58 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=56.0
Q ss_pred HHHhhcc-CCceEEEEEcCCCChHHHHhh-hhhhccccccCCCC-EEEEEEeCCCCC-HHHHHHHHHHHcCCCcccc---
Q 038405 165 VWGCIED-QSEQTIGLYGMGGVGKITLLK-KPNNKFLDVNHCFD-LVIFVAVSKEGN-LEKIQEVIRKKLDISDYIW--- 237 (863)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~--- 237 (863)
.++.+.. ..-.-++|+|..|+|||+||. .+.+.. .-+ .++++-+++... +.++.+.+.+.=.......
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3444432 333568999999999999965 666653 234 457788887643 5566666655322211100
Q ss_pred -cccChhh------HHHHHHHHh--ccCcEEEEEccccc
Q 038405 238 -NMKGEYD------RAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 238 -~~~~~~~------~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
....... .+..+.+++ +++.+||++||+-.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 0111111 122344555 47999999999854
No 405
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.69 E-value=0.088 Score=54.65 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|+|+|..|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998764
No 406
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.62 E-value=0.21 Score=54.41 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=55.4
Q ss_pred HHHhhcc-CCceEEEEEcCCCChHHHHhh-hhhhccccccCCCC-EEEEEEeCCCCC-HHHHHHHHHHHcCCCcccc---
Q 038405 165 VWGCIED-QSEQTIGLYGMGGVGKITLLK-KPNNKFLDVNHCFD-LVIFVAVSKEGN-LEKIQEVIRKKLDISDYIW--- 237 (863)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~--- 237 (863)
.++.+.. ..-.-++|+|..|+|||+||. .+.+.. .-+ .++++-+++... +.++.+.+.+.=.......
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 3444432 233568999999999999965 666653 245 457788887643 5556666654211111000
Q ss_pred -cccChh------hHHHHHHHHh--ccCcEEEEEccccc
Q 038405 238 -NMKGEY------DRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 238 -~~~~~~------~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
...... ..+..+.+++ +++.+||++||+-.
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 011111 1122345555 47999999999854
No 407
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.58 E-value=0.084 Score=50.98 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+|.|.|++|+||||.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 408
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.56 E-value=0.095 Score=54.03 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+++|+|..|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998876
No 409
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.48 E-value=0.1 Score=51.75 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|..|+|||||++.++.-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999988654
No 410
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.45 E-value=0.091 Score=54.25 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
++|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998875
No 411
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.44 E-value=0.097 Score=54.23 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999998775
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.39 E-value=0.16 Score=55.45 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNL 219 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 219 (863)
...+|+|+|..|+|||||++.++.... . . .+.+++.-.+.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~-~-~--~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE-Q-Q--GKSVMLAAGDTFRA 334 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH-H-T--TCCEEEECCCTTCH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh-h-c--CCeEEEecCcccch
Confidence 457999999999999999999987762 1 1 23445544444443
No 413
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.34 E-value=0.093 Score=53.22 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44689999999999999999988654
No 414
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.32 E-value=0.1 Score=53.38 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998765
No 415
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.31 E-value=0.086 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.176 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.29 E-value=0.09 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 417
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.28 E-value=0.087 Score=51.51 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..|.|.|++|+||||+|+.++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 418
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.26 E-value=0.11 Score=52.44 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345789999999999999999998654
No 419
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.19 E-value=0.1 Score=51.90 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998754
No 420
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.18 E-value=0.11 Score=51.50 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..|.|.|+.|+||||+|+.++...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999998876
No 421
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.15 E-value=0.1 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|..|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 422
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.15 E-value=0.087 Score=51.22 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34679999999999999999998754
No 423
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.14 E-value=0.1 Score=51.42 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|..|.|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998754
No 424
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.12 E-value=0.19 Score=49.42 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 425
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.11 E-value=0.075 Score=51.44 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
-.+++|+|..|+|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998764
No 426
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.10 E-value=0.14 Score=54.94 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcccccc--------CCCC-EEEEEEeCCCC-CHHHHHHHHHHHcCCCcc-----ccc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVN--------HCFD-LVIFVAVSKEG-NLEKIQEVIRKKLDISDY-----IWN 238 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~ 238 (863)
-.-++|+|..|+|||+|+.++++.. ... ++-+ .++++-+++.. .+.++.+++.+.=..... ..+
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred CCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 3457899999999999999998875 210 1112 66777777654 345555555442101100 000
Q ss_pred ccChh-----hHHHHHHHHhc---cCcEEEEEccccc
Q 038405 239 MKGEY-----DRAVEILISLR---RKKFVLLLDDVWE 267 (863)
Q Consensus 239 ~~~~~-----~~~~~l~~~l~---~k~~LlVlDdv~~ 267 (863)
..... ..+..+.++++ ++.+||++||+-.
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11111 12234566664 6899999999853
No 427
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.09 E-value=0.12 Score=52.17 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|..|+|||||++.++.-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 445789999999999999999998654
No 428
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.07 E-value=0.1 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998754
No 429
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.07 E-value=0.38 Score=52.74 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=40.6
Q ss_pred HHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC-HHHHHHHH
Q 038405 165 VWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN-LEKIQEVI 226 (863)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 226 (863)
+++.|.. ..-..++|.|..|+|||+|+.++++.. +-+.++++-+++... +.++.+++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4455533 334678999999999999999987753 235788888887765 45555554
No 430
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.06 E-value=0.19 Score=54.33 Aligned_cols=103 Identities=10% Similarity=0.046 Sum_probs=58.9
Q ss_pred HHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhcccccc-CCCCEEEEEEeCCCC-CHHHHHHHHHHHcCCCcccc----
Q 038405 165 VWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKFLDVN-HCFDLVIFVAVSKEG-NLEKIQEVIRKKLDISDYIW---- 237 (863)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~---- 237 (863)
.++.|.. ..-.-++|+|.+|+|||+|+..+++...... +.=+.++++-+++.. .+.++.+++.+.=.......
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 3455533 2335578999999999999999988762111 111467777777654 35566666654321111000
Q ss_pred cccCh------hhHHHHHHHHhc---cCcEEEEEccccc
Q 038405 238 NMKGE------YDRAVEILISLR---RKKFVLLLDDVWE 267 (863)
Q Consensus 238 ~~~~~------~~~~~~l~~~l~---~k~~LlVlDdv~~ 267 (863)
.+... ...+..+.++++ ++.+||++||+-.
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 01111 112234556665 5999999999743
No 431
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.01 E-value=0.11 Score=51.92 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|..|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998764
No 432
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.97 E-value=0.06 Score=55.25 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+..+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 433
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.96 E-value=0.11 Score=52.02 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
.-.+++|+|..|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 434
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.89 E-value=0.13 Score=51.27 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|..|+|||||.+.++.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345789999999999999999988654
No 435
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.83 E-value=0.14 Score=53.12 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..++|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988776
No 436
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.82 E-value=0.41 Score=45.44 Aligned_cols=107 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCccEEEeecc-cccc----cchhhhhcCCCccEEeccCCcCcc-----ccchhhhcccccceeeccCCCcc-----ccc
Q 038405 521 PHLQTLLVRFT-VLEI----FPHRFFESMGALKVLDLSYNLDLT-----QLPAEMGALINLRCLNLSNTSIE-----ELP 585 (863)
Q Consensus 521 ~~Lr~L~l~~~-~l~~----l~~~~~~~l~~L~~L~Ls~~~~i~-----~lp~~i~~L~~L~~L~L~~~~i~-----~lP 585 (863)
+.|+.|+|+++ .+.. .-...+..-+.|+.|+|++| .+. .+-..+..-..|++|+|++|.|. .|-
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Q ss_pred hhhhcccCccEEecCCCCC-ccc------cchhhhcCCCCCceeeccCcch
Q 038405 586 SEIMYLKNLKILLLDGMRH-FHL------IPARVFSSLLSLKVFSLFSTEL 629 (863)
Q Consensus 586 ~~i~~L~~L~~L~l~~~~~-l~~------lp~~~i~~L~~L~~L~l~~~~~ 629 (863)
..+..-+.|++|+|++|.. ... +... +..=+.|..|++..+..
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCCc
No 437
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.79 E-value=0.13 Score=50.74 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
.-.+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999998764
No 438
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.79 E-value=0.13 Score=51.61 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|..|+|||||.+.++.-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998654
No 439
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.70 E-value=0.1 Score=56.62 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|+|+|.+|+||||+|..++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988766
No 440
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.69 E-value=0.13 Score=51.70 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|..|+|||||++.++.-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345689999999999999999998765
No 441
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.68 E-value=0.4 Score=60.51 Aligned_cols=87 Identities=15% Similarity=0.014 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (863)
.-+++-|+|.+|+||||||.+++.... . .-..++|++....++... ++.++...... +..+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~-~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-H--TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H--hCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 457899999999999999999887762 1 224688998888777542 55666543221 223445555555
Q ss_pred HHHhc-cCcEEEEEccccc
Q 038405 250 LISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 250 ~~~l~-~k~~LlVlDdv~~ 267 (863)
....+ .+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHhcCCCEEEECCHHH
Confidence 44443 4566999999864
No 442
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.68 E-value=0.23 Score=51.08 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=33.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRK 228 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (863)
.-.+++|+|.+|+|||||++.++.... .. .-..++|+.... ...++...+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~-~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG-TA-MGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH-HT-SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HH-cCCeEEEEeCcC--CHHHHHHHHHH
Confidence 446899999999999999999887762 11 111466665432 34444444433
No 443
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.66 E-value=0.12 Score=49.36 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999988654
No 444
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.63 E-value=0.12 Score=51.53 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 445
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.62 E-value=0.13 Score=54.18 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+++|+|..|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34799999999999999999998876
No 446
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.59 E-value=0.14 Score=51.96 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|..|+|||||++.++.-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445789999999999999999998764
No 447
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.56 E-value=0.13 Score=52.55 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998775
No 448
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.54 E-value=0.24 Score=52.11 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=33.4
Q ss_pred hccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC
Q 038405 169 IEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN 218 (863)
Q Consensus 169 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~ 218 (863)
+.....+++.+.|.||+||||+|..++.... ....=..++-|+.....+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la-~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA-LAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHH-HHCTTSCEEEEECCSSCH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH-HhcCCCeEEEEECCCCCC
Confidence 3455678999999999999999999887662 002223466666664433
No 449
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.53 E-value=0.46 Score=60.74 Aligned_cols=87 Identities=14% Similarity=0.005 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHH
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEI 249 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (863)
.-+++.|+|.+|+||||||.+++.... ..-..++|++.-..++... ++.++...... +..+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 457899999999999999999988762 2224688998887776542 55565542211 223445555555
Q ss_pred HHHh-ccCcEEEEEccccc
Q 038405 250 LISL-RRKKFVLLLDDVWE 267 (863)
Q Consensus 250 ~~~l-~~k~~LlVlDdv~~ 267 (863)
.... +.+.-+||+|.+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 4433 24566999999864
No 450
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.53 E-value=0.14 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
..-.+++|+|..|+|||||++.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44578999999999999999999874
No 451
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.53 E-value=0.14 Score=46.82 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.|.|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999987653
No 452
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.52 E-value=0.13 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999988754
No 453
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.52 E-value=0.14 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHhhhhhhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 454
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.50 E-value=0.45 Score=45.47 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
-|.|=|.-|+||||.++.+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37788999999999999999887
No 455
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.43 E-value=0.12 Score=48.83 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHhhhhhhc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998874
No 456
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.42 E-value=0.14 Score=51.66 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|..|+|||||.+.++.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345689999999999999999988654
No 457
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.38 E-value=0.13 Score=52.32 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998764
No 458
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.38 E-value=0.13 Score=58.68 Aligned_cols=46 Identities=13% Similarity=0.010 Sum_probs=32.5
Q ss_pred ccccchhhHHHHHHHhhccCCce-----------EEEEEcCCCChHHHHhhhhhhcc
Q 038405 153 EKTVGADSKLDEVWGCIEDQSEQ-----------TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.++|.+..+..+.-.+.....+ -|.++|.+|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 34567777665555444433211 48899999999999999998765
No 459
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.36 E-value=0.14 Score=52.47 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456789999999999999999987653
No 460
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.34 E-value=0.13 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHhhhhhhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 461
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.34 E-value=0.14 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...++.+.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999998665
No 462
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.33 E-value=0.2 Score=54.62 Aligned_cols=88 Identities=11% Similarity=0.158 Sum_probs=50.0
Q ss_pred eEEEEEcCCCChHHHHhh-hhhhccccccCCCC-EEEEEEeCCCCC-HHHHHHHHHHHcCCCcc-----ccccc-----C
Q 038405 175 QTIGLYGMGGVGKITLLK-KPNNKFLDVNHCFD-LVIFVAVSKEGN-LEKIQEVIRKKLDISDY-----IWNMK-----G 241 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~-----~~~~~-----~ 241 (863)
.-++|+|..|+|||+||. .+.+.. . -+ .++++-+++... +.++.+.+.+.=..... ..+.. -
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 458999999999999964 666653 2 34 467788887643 44555555432111000 00000 0
Q ss_pred hhhHHHHHHHHh--ccCcEEEEEccccc
Q 038405 242 EYDRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 242 ~~~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
....+..+.+++ +++.+||++||+-.
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 111223344444 47999999999743
No 463
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.32 E-value=0.15 Score=55.39 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....+|.|+|++|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999998765
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.32 E-value=0.13 Score=48.59 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.|.|.|..|+||||||..+..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 668999999999999999988764
No 465
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.30 E-value=0.25 Score=46.83 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999988654
No 466
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.23 E-value=0.28 Score=48.35 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEE
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVA 212 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 212 (863)
...|.|.|+.|+||||+++.+..... ...+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeeec
Confidence 36899999999999999999998872 34455344433
No 467
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.18 E-value=0.16 Score=51.12 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=56.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHcCCCcccccccChhhHHHHHH
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSK-EGNLEKIQEVIRKKLDISDYIWNMKGEYDRAVEIL 250 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (863)
..-.+++|+|+.|+|||||++.+..... ..+...+++.-.. .+-... .+ .+ ..... -..+.......+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i~~~~~~---~~--~~-v~q~~-~gl~~~~l~~~la 92 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPIEYVFKH---KK--SI-VNQRE-VGEDTKSFADALR 92 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSCCSCCCC---SS--SE-EEEEE-BTTTBSCHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcceeecCC---cc--ee-eeHHH-hCCCHHHHHHHHH
Confidence 4557999999999999999999887541 1112233322111 000000 00 00 00000 0001123455667
Q ss_pred HHhccCcEEEEEcccccccccccccccCCCCCCCeEEEEeecch
Q 038405 251 ISLRRKKFVLLLDDVWERLDLSKTGVSLSDCQNGSKIVFTTRSE 294 (863)
Q Consensus 251 ~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTTr~~ 294 (863)
..|..++=+|++|..-+......+.... ..|.-|++||-+.
T Consensus 93 ~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~ 133 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTN 133 (261)
T ss_dssp HHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCS
T ss_pred HHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcc
Confidence 7777777789999986433322221111 2355678888654
No 468
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.14 E-value=0.29 Score=51.15 Aligned_cols=49 Identities=24% Similarity=0.266 Sum_probs=34.4
Q ss_pred hccCCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHH
Q 038405 169 IEDQSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLE 220 (863)
Q Consensus 169 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (863)
+.+...+++.+.|-||+||||+|..++.... ..-..++-|+.....++.
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChh
Confidence 3445578888999999999999999887762 222356677766544433
No 469
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.11 E-value=0.39 Score=52.38 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=56.5
Q ss_pred HHHhhcc-CCceEEEEEcCCCChHHHHhh-hhhhccccc----cCCCC-EEEEEEeCCCCC-HHHHHHHHHHHcCCCccc
Q 038405 165 VWGCIED-QSEQTIGLYGMGGVGKITLLK-KPNNKFLDV----NHCFD-LVIFVAVSKEGN-LEKIQEVIRKKLDISDYI 236 (863)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~----~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~ 236 (863)
.++.+.. ..-.-++|+|..|+|||+||. .+.+.. .. ..+-+ .++++-+++... +.++.+.+.+.=......
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 3444432 333568999999999999954 566654 21 01234 577888887643 556666665422111100
Q ss_pred c----cccChh------hHHHHHHHHh--ccCcEEEEEccccc
Q 038405 237 W----NMKGEY------DRAVEILISL--RRKKFVLLLDDVWE 267 (863)
Q Consensus 237 ~----~~~~~~------~~~~~l~~~l--~~k~~LlVlDdv~~ 267 (863)
. ...... ..+..+.+++ +++.+||++||+-.
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 0 011111 1122344555 47999999999854
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.09 E-value=0.16 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...+|+|+|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 471
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.08 E-value=0.14 Score=49.18 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999988753
No 472
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.04 E-value=0.36 Score=46.78 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCE
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDL 207 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~ 207 (863)
-..|.|-|+.|+||||+++.+..... ...+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCc
Confidence 35799999999999999999998872 234544
No 473
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.99 E-value=0.32 Score=47.13 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=33.3
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRK 228 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (863)
..|.|-|+.|+||||+++.++.... ...+..+.+..-.....+.+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999998873 234433333332222234455555554
No 474
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.89 E-value=0.25 Score=49.95 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=27.9
Q ss_pred eEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCC
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSK 215 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 215 (863)
++|+|.|-||+||||+|..++.... . .-..++.|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la-~--~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH-A--MGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH-T--TTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH-H--CCCcEEEEcCCC
Confidence 6788899999999999999887762 1 122456666553
No 475
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.83 E-value=0.14 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.-.++.|+|.+|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999988644
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.67 E-value=0.18 Score=50.97 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....|.|.|..|+||||+|+.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998775
No 477
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.62 E-value=0.18 Score=53.64 Aligned_cols=27 Identities=19% Similarity=-0.002 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
...++++|+|+.|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455799999999999999999998754
No 478
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.60 E-value=0.53 Score=59.44 Aligned_cols=86 Identities=15% Similarity=0.038 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---cccChhhHHHHHH
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGNLEKIQEVIRKKLDISDYIW---NMKGEYDRAVEIL 250 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 250 (863)
-++|-|+|+.|+||||||.++.... ...=..++|+.+-+..+..- ++.+++..... +..+.++....+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 4799999999999999999988765 23345789998888877664 77777765432 2233355555555
Q ss_pred HHhc-cCcEEEEEccccc
Q 038405 251 ISLR-RKKFVLLLDDVWE 267 (863)
Q Consensus 251 ~~l~-~k~~LlVlDdv~~ 267 (863)
..++ +.--+||+|-|..
T Consensus 1503 ~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHcCCCCEEEEccHHh
Confidence 5555 4566899999853
No 479
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.58 E-value=0.16 Score=51.04 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhc
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
-.+++|+|..|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998754
No 480
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.56 E-value=0.22 Score=46.73 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=25.6
Q ss_pred HHHHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhc
Q 038405 163 DEVWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 163 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
.++.+.+.. .....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 334444433 45567899999999999999988743
No 481
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=89.55 E-value=11 Score=39.42 Aligned_cols=26 Identities=35% Similarity=0.309 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
....|+|+|.+|+|||||...+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999987654
No 482
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.55 E-value=0.25 Score=47.84 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=27.3
Q ss_pred EEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCCC
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEGN 218 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~ 218 (863)
.|.+.|.||+||||+|..++.... ...++ +.++.+.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~--~~G~~-V~v~d~D~q~~ 47 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL--RQGVR-VMAGVVETHGR 47 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH--HTTCC-EEEEECCCTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH--HCCCC-EEEEEeCCCCC
Confidence 478899999999999998888762 22333 44455544333
No 483
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.43 E-value=0.18 Score=48.59 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=21.1
Q ss_pred chhhHHHHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 157 GADSKLDEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
|++...+.+.+.......-.|+|+|.+|+|||||+..+.+..
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 344444444444444445568999999999999998887543
No 484
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.40 E-value=0.25 Score=54.53 Aligned_cols=43 Identities=12% Similarity=-0.059 Sum_probs=32.2
Q ss_pred cchhhHHHHHHHhh--ccCCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 156 VGADSKLDEVWGCI--EDQSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 156 vGr~~~~~~l~~~L--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
+.|.+-.+.+.+.. ......+|.+.|+.|+||||+|+.++...
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 34555555555555 22345789999999999999999999987
No 485
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.40 E-value=0.16 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999987653
No 486
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.40 E-value=0.19 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHhhhhhhc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998864
No 487
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.39 E-value=0.16 Score=52.26 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|..|.|||||++.+..-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 455789999999999999999987654
No 488
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.27 E-value=0.18 Score=46.50 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
--|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999987653
No 489
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.17 E-value=0.17 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988754
No 490
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.13 E-value=0.25 Score=46.48 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHhhhhhhc
Q 038405 173 SEQTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
....|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998765
No 491
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.08 E-value=0.18 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHhhhhhhcc
Q 038405 176 TIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.|.|+|.+|+|||||+..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999987653
No 492
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.97 E-value=0.17 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..+||.|++|+||||+|+.+....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998876
No 493
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.95 E-value=0.19 Score=46.76 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
--|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 458999999999999999987653
No 494
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.95 E-value=0.34 Score=45.73 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=25.5
Q ss_pred HHHHHhhccCCceEEEEEcCCCChHHHHhhhhhhc
Q 038405 163 DEVWGCIEDQSEQTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 163 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
..+.+ +.......|.|+|.+|+|||||...+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33345567899999999999999998754
No 495
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.94 E-value=0.2 Score=49.71 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..|.|.|..|+||||+++.++...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998876
No 496
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.93 E-value=0.21 Score=51.08 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhcc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
..-.+++|+|..|.|||||.+.++.-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345789999999999999999988654
No 497
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.90 E-value=0.18 Score=53.53 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHhhhhhhcc
Q 038405 175 QTIGLYGMGGVGKITLLKKPNNKF 198 (863)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (863)
.+|.|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998776
No 498
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.89 E-value=0.25 Score=53.13 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCChHHHHhhhhhhc
Q 038405 172 QSEQTIGLYGMGGVGKITLLKKPNNK 197 (863)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (863)
....+++|+|..|+|||||.+.+...
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 34568999999999999999999873
No 499
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.81 E-value=0.28 Score=50.22 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCC
Q 038405 174 EQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSK 215 (863)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 215 (863)
.++|+|.|-||+||||+|..++.... .. . ..++-|....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La-~~-G-~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA-EM-G-KKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH-HT-T-CCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH-HC-C-CeEEEEecCC
Confidence 46889999999999999999887762 11 1 2455666553
No 500
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.78 E-value=0.59 Score=51.50 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=39.5
Q ss_pred HHHhhcc-CCceEEEEEcCCCChHHHHhhhhhhccccccCCCCEEEEEEeCCCC-CHHHHHHHH
Q 038405 165 VWGCIED-QSEQTIGLYGMGGVGKITLLKKPNNKFLDVNHCFDLVIFVAVSKEG-NLEKIQEVI 226 (863)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i 226 (863)
+++.|.. ..-..++|.|..|+|||+|+.++++.. +-+.++++-+++.. .+.++.+++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4555533 344678999999999999999998764 23578888888763 344444443
Done!