BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038406
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LBC0|CCT13_ARATH Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2
Length = 317
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 78/160 (48%), Gaps = 51/160 (31%)
Query: 8 FSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLH----- 62
FSPS+KDGI K+S L YC+FLQ LG KL + QV ++CAM++CH+FYM Q H
Sbjct: 44 FSPSRKDGIDLVKESFLRSSYCTFLQRLGMKLHVSQVTISCAMVMCHRFYMRQSHAKNDW 103
Query: 63 ----------------------------------------------DVYYKQKELILTAE 76
+ Y++ KE+IL+ E
Sbjct: 104 QTIATSSLFLACKAEDEPCQLSSVVVASYEIIYEWDPSASIRIHQTECYHEFKEIILSGE 163
Query: 77 RLLPATIAFDFDIQLPYEPLVAAFTRLDLVCDLAKSSMEF 116
LL +T AF DI+LPY+PL AA RL+ DLA ++ F
Sbjct: 164 SLLLSTSAFHLDIELPYKPLAAALNRLNAWPDLATAAWNF 203
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1
Length = 543
Score = 99.0 bits (245), Expect = 8e-21, Method: Composition-based stats.
Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 52/162 (32%)
Query: 7 EFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLH---- 62
E SPS++DGI KK+S L K YC+FLQ+LG +LK+PQV +A A++ CH+FY+ Q H
Sbjct: 45 ENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHAKND 104
Query: 63 -----------------------------------------------DVYYKQKELILTA 75
+VY +QKELIL A
Sbjct: 105 RRTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVYDQQKELILLA 164
Query: 76 ERLLPATIAFDFDIQLPYEPLVAAFTRLDLVCD-LAKSSMEF 116
ER++ AT+ FD ++ PY+PLV A + + + LA+ + F
Sbjct: 165 ERVVLATLGFDLNVHHPYKPLVEAIRKFKVAQNALAQVAWNF 206
>sp|Q6Z7H3|CCT12_ORYSJ Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2
Length = 630
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 79/150 (52%), Gaps = 51/150 (34%)
Query: 7 EFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQ------ 60
+FSPS+KDGI+ +SE+ +LYCSF++++G +LKLPQ+ +A A+M CH+FY++Q
Sbjct: 27 KFSPSRKDGITEIMESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSLAKNG 86
Query: 61 -------------------------------------------LH--DVYYKQKELILTA 75
+H DV+ KQK LILT
Sbjct: 87 WQTIATVCIFLASKVEDTPCPLDQVIRVAYGTMYRRDPATARRIHQKDVFEKQKALILTG 146
Query: 76 ERLLPATIAFDFDIQLPYEPLVAAFTRLDL 105
ERL+ T+ FDF+IQ PY PL+ A +L +
Sbjct: 147 ERLVLTTVRFDFNIQHPYRPLLDAMEKLGI 176
>sp|Q0E474|CCT11_ORYSJ Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2
Length = 446
Score = 92.4 bits (228), Expect = 8e-19, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 51/148 (34%)
Query: 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLH------ 62
SPS++DG+ K++EL YCSF++++G +L+LPQV +A A +LCH+FY+ Q H
Sbjct: 20 SPSRRDGVGAAKEAELRATYCSFIRDVGLRLQLPQVTIATATLLCHRFYLRQSHAKNEWQ 79
Query: 63 ---------------------------------------------DVYYKQKELILTAER 77
+V KQKELIL E
Sbjct: 80 TVATVCVFLASKIEDTPCPLQRVIIVAYETMYRKDCNAAHRIYQKEVLEKQKELILVGET 139
Query: 78 LLPATIAFDFDIQLPYEPLVAAFTRLDL 105
LL +TI FDF+IQ PYEPL A +L +
Sbjct: 140 LLLSTIRFDFNIQHPYEPLKLALKKLGI 167
>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1
Length = 541
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 52/162 (32%)
Query: 7 EFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLH---- 62
E SPS+ D I KK++ L K YC+FLQ+LG +LK+PQV +A A++ CH+F++ Q H
Sbjct: 42 ENSPSRLDSIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHARND 101
Query: 63 -----------------------------------------------DVYYKQKELILTA 75
+VY +QKELIL
Sbjct: 102 RRTIATVCMFLAGKVEETPRPLKDVIVVSYEIIHKKDPTTAQKIKQKEVYEQQKELILNG 161
Query: 76 ERLLPATIAFDFDIQLPYEPLVAAFTRLDLVCD-LAKSSMEF 116
E+++ +T+ FDF++ PY+PLV A + + + LA+ + F
Sbjct: 162 EKIVLSTLGFDFNVYHPYKPLVEAIKKFKVAQNALAQVAWNF 203
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2
Length = 579
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 52/162 (32%)
Query: 7 EFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLH---- 62
E SPS+ DGI KK++ L K YC+FLQ+LG +LK+PQV +A A++ CH+F+ Q H
Sbjct: 42 ENSPSRLDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKND 101
Query: 63 -----------------------------------------------DVYYKQKELILTA 75
+VY +QKELIL
Sbjct: 102 RRTIATVCMFLAGKVEETPRPLKDVIFVSYEIINKKDPGASQKIKQKEVYEQQKELILNG 161
Query: 76 ERLLPATIAFDFDIQLPYEPLVAAFTRLDLVCD-LAKSSMEF 116
E+++ +T+ FD ++ PY+PLV A + + + LA+ + F
Sbjct: 162 EKIVLSTLGFDLNVYHPYKPLVEAIKKFKVAQNALAQVAWNF 203
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2
Length = 490
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 51/150 (34%)
Query: 7 EFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLH---- 62
E S S++DGI KK+S L K YC+FLQ+LG +LK+PQV +A A++ CH+F++ Q H
Sbjct: 46 ENSLSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKND 105
Query: 63 -----------------------------------------------DVYYKQKELILTA 75
+VY +QKELIL
Sbjct: 106 RRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKDAAAVQRIKQKEVYEQQKELILLG 165
Query: 76 ERLLPATIAFDFDIQLPYEPLVAAFTRLDL 105
ER++ T+ FD ++ PY+PLV A + +
Sbjct: 166 ERVVLVTLGFDLNVHHPYKPLVEAIKKFKV 195
>sp|Q56YF8|CCT12_ARATH Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2
Length = 460
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 48/142 (33%)
Query: 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLH------ 62
SPS++DGI K ++ L YC+FL+ LG +LK+PQV +A A+ CH+F++ Q H
Sbjct: 42 SPSRRDGIDLKTETRLRDSYCTFLEILGERLKVPQVTIATAIFFCHRFFLRQSHAKNDRQ 101
Query: 63 ------------------------------------------DVYYKQKELILTAERLLP 80
+VY +QKEL+L E L+
Sbjct: 102 TIATVCMLLAGKVEETPVTLEDVIIASYERIHKKDLAGAQRKEVYDQQKELVLIGEELVL 161
Query: 81 ATIAFDFDIQLPYEPLVAAFTR 102
+T+ FD I PY+PLV A +
Sbjct: 162 STLNFDLCISHPYKPLVEAIKK 183
>sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1
Length = 247
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 46/131 (35%)
Query: 9 SPSKKDGISFKKDS-ELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQ------- 60
SPS+ DGI+ K+++ + W Y SFLQELG +L PQ +A A++LC +F+ Q
Sbjct: 18 SPSRLDGINLKEETFQRWS-YTSFLQELGQRLNNPQKTIATAIVLCQRFFTRQSLTKNDP 76
Query: 61 -------------------------------------LHDVYYKQKELILTAERLLPATI 83
L DV+ + K +LT E+L+ +T+
Sbjct: 77 KTVAIICMFIAGKVEGSPRPAGDVVFVSYRVLFNKEPLRDVFERLKMTVLTGEKLVLSTL 136
Query: 84 AFDFDIQLPYE 94
D +I+ PY+
Sbjct: 137 ECDLEIEHPYK 147
>sp|Q9AS36|CCL11_ORYSJ Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1
Length = 427
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
SPS+KDGI ++ L C +QE G LKLPQ ++A A +L H+FY
Sbjct: 19 SPSRKDGIDEATETALRVYGCDLIQESGILLKLPQAVMATAQVLFHRFY 67
>sp|O74627|CG1C_SCHPO Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pch1 PE=1 SV=1
Length = 342
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 50/144 (34%)
Query: 8 FSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYM--------- 58
F+PS DGI ++ C+F+ +G +LKLPQ +A A + H+FY+
Sbjct: 27 FTPSALDGIPLDQEEIQRSKGCNFIINVGLRLKLPQTALATANIYFHRFYLRFSLKNYHY 86
Query: 59 ------------------HQLHDV----------------------YYKQKELILTAERL 78
+L D+ Y++ +++IL E +
Sbjct: 87 YEVAATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNVLVDEQTKEYWRWRDVILYTEEV 146
Query: 79 LPATIAFDFDIQLPYEPLVAAFTR 102
L + FDF ++ PY P V +F +
Sbjct: 147 LLEALCFDFTVEHPY-PYVLSFIK 169
>sp|Q5RD50|CCNL1_PONAB Cyclin-L1 OS=Pongo abelii GN=CCNL1 PE=3 SV=1
Length = 172
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
+PS +DG+ +++L L C +Q G L+LPQV +A +L H+F+
Sbjct: 67 TPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFF 115
>sp|Q6GN15|CCNL1_XENLA Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2
Length = 496
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
+PS DG+ +++L L C +Q G L+LPQV +A +L H+F+
Sbjct: 47 TPSMSDGLDLNTETDLRILGCELIQSAGILLRLPQVAMATGQVLFHRFF 95
>sp|Q8RWV3|CCL11_ARATH Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=2 SV=2
Length = 416
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
SPS+KDGI + L C +QE G LKLPQ ++A +L +FY
Sbjct: 19 SPSRKDGIDETTEISLRIYGCDLIQEGGILLKLPQAVMATGQVLFQRFY 67
>sp|Q9R1Q2|CCNL1_RAT Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1
Length = 527
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
+PS +DG+ +++L L C +Q G L+LPQV +A +L H+F+
Sbjct: 68 TPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFF 116
>sp|Q52KE7|CCNL1_MOUSE Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=1 SV=1
Length = 532
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
+PS +DG+ +++L L C +Q G L+LPQV +A +L H+F+
Sbjct: 73 TPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFF 121
>sp|Q9UK58|CCNL1_HUMAN Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1
Length = 526
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
+PS +DG+ +++L L C +Q G L+LPQV +A +L H+F+
Sbjct: 67 TPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFF 115
>sp|O60583|CCNT2_HUMAN Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2
Length = 730
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 7 EFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHDVYY 66
E +PS++ G+ K+ + + +QE+G +L + Q+ + A++ H+FYMH +
Sbjct: 19 ENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFN 78
Query: 67 KQ----KELILTAE-----RLLPATIAFDFDIQLPYEPLVAAFTRLDLVCD 108
K L L A+ R L I P EPL LD CD
Sbjct: 79 KNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPL------LDTKCD 123
>sp|Q9QWV9|CCNT1_MOUSE Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=3
Length = 724
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 7 EFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQ 60
E SPS++ G+ K+ + + LQ++G +L + Q+ + A++ H+FYM Q
Sbjct: 20 ENSPSRRFGVDSDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQ 73
>sp|Q5ZJP9|CCNL1_CHICK Cyclin-L1 OS=Gallus gallus GN=CCNL1 PE=2 SV=1
Length = 534
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 4 HRREFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
H F+PS G+ ++EL C +Q G L+LPQV +A +L +F+
Sbjct: 68 HTLRFTPSMSSGLDPDTETELRVTGCELIQAAGILLRLPQVAMATGQVLFQRFF 121
>sp|O60563|CCNT1_HUMAN Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1
Length = 726
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 7 EFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQ 60
E SPS++ G+ K+ + + LQ++G +L + Q+ + A++ H+FYM Q
Sbjct: 20 ENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQ 73
>sp|Q8HXN7|CCNT1_PANTR Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1
Length = 725
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 7 EFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQ 60
E SPS++ G+ K+ + + LQ++G +L + Q+ + A++ H+FYM Q
Sbjct: 19 ENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQ 72
>sp|Q96S94|CCNL2_HUMAN Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1
Length = 520
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 8 FSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
F+PS G+ +++L + C +Q G L+LPQV +A +L +F+
Sbjct: 61 FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFF 110
>sp|Q9XT26|CCNT1_HORSE Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1
Length = 727
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 7 EFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQ 60
E SPS++ G+ K+ + + LQ++G +L + Q+ + A++ H+FYM Q
Sbjct: 20 ENSPSRRFGLDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQ 73
>sp|Q7SBD4|EIF3C_NEUCR Eukaryotic translation initiation factor 3 subunit C OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=nip-1 PE=3 SV=1
Length = 872
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 45 IVACAMMLCHQFYMHQLHDVYYKQKELILTAERLLPATIA-FDFDIQLPY 93
I+ MLC Q Y LHD YYK ++L+LT+ L TIA FD Q+ Y
Sbjct: 503 IIRARAMLC-QIYFLALHDEYYKSRDLMLTSH--LQETIANFDIATQILY 549
>sp|O96433|CCNT_DROME Cyclin-T OS=Drosophila melanogaster GN=CycT PE=1 SV=2
Length = 1097
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHDVYYKQ 68
SPS++ GI + + ++ +QE+G +L++ Q+ + A++ H+FY H +
Sbjct: 55 SPSRRCGIKGDDELQYRQMTAYLIQEMGQRLQVSQLCINTAIVYMHRFY--AFHSFTHFH 112
Query: 69 KELILTAERLLPATI 83
+ + +A L A +
Sbjct: 113 RNSMASASLFLAAKV 127
>sp|Q5I0H5|CCNL2_RAT Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=2 SV=2
Length = 520
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 8 FSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
F+PS G+ ++ L + C +Q G L+LPQV +A +L +F+
Sbjct: 59 FTPSMSSGLDIDTETGLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFF 108
>sp|Q7ZVX0|CCNL1_DANRE Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1
Length = 498
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 5 RREFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQ 60
R +PS DG+ + +++L L C +Q G L+LPQV +A ++ +F+ +
Sbjct: 43 RLSTTPSMLDGLDHETETDLRILGCERIQSAGILLRLPQVAMATGQVIFQRFFFSK 98
>sp|Q5BKF8|CCNL2_XENTR Cyclin-L2 OS=Xenopus tropicalis GN=ccnl2 PE=2 SV=1
Length = 497
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 1 MVLHRREFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
M R +PS DGI + +L + C +Q G L+LPQV +A +L +F+
Sbjct: 32 MAEERCALTPSVVDGIDVNTEIDLRCVGCELVQAAGILLRLPQVAMATGQVLFQRFF 88
>sp|Q9JJA7|CCNL2_MOUSE Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1
Length = 518
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 8 FSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
F+PS G+ ++ L + C +Q G L+LPQV +A +L +F+
Sbjct: 59 FTPSMSSGLDVDTETGLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFF 108
>sp|Q6T8E9|CCNT1_BOVIN Cyclin-T1 OS=Bos taurus GN=CCNT1 PE=1 SV=1
Length = 727
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 7 EFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQ 60
E SPS++ G+ K+ + + LQ++G +L + Q+ + A++ H+FYM Q
Sbjct: 20 ENSPSRRFGLDPDKELSNRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQ 73
>sp|Q28F72|CCNC_XENTR Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1
Length = 283
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 2 VLHRREFSPSKKDGISFKKDSELWKL---YCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
+L +++ ++ + F + E WKL + + +Q LG LKL Q ++A A + +FY
Sbjct: 15 ILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFY 73
>sp|Q4KLA0|CCNC_XENLA Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1
Length = 283
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 2 VLHRREFSPSKKDGISFKKDSELWKL---YCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
+L +++ ++ + F + E WKL + + +Q LG LKL Q ++A A + +FY
Sbjct: 15 ILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFY 73
>sp|P24863|CCNC_HUMAN Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2
Length = 283
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 2 VLHRREFSPSKKDGISFKKDSELWKL---YCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
+L +++ ++ + F + E WKL + + +Q LG LKL Q ++A A + +FY
Sbjct: 15 ILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFY 73
>sp|Q3ZCK5|CCNC_BOVIN Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1
Length = 283
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 2 VLHRREFSPSKKDGISFKKDSELWKL---YCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
+L +++ ++ + F + E WKL + + +Q LG LKL Q ++A A + +FY
Sbjct: 15 ILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFY 73
>sp|Q62447|CCNC_MOUSE Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=4
Length = 283
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 2 VLHRREFSPSKKDGISFKKDSELWKL---YCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
+L +++ ++ + F + E WKL + + +Q LG LKL Q ++A A + +FY
Sbjct: 15 ILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFY 73
>sp|P55168|CCNC_CHICK Cyclin-C OS=Gallus gallus GN=CCNC PE=2 SV=1
Length = 283
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 2 VLHRREFSPSKKDGISFKKDSELWKL---YCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
+L +++ ++ + F + E WKL + + +Q LG LKL Q ++A A + +FY
Sbjct: 15 ILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFY 73
>sp|Q0V1H5|EIF3C_PHANO Eukaryotic translation initiation factor 3 subunit C
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=NIP1 PE=3 SV=1
Length = 853
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 30 SFLQELGTKL-KLPQVIVACAMMLCHQFYMHQLHDVYYKQKELILTAERLLPATIA-FDF 87
S +Q L T L + + I+ MLC Q Y LHD YYK ++++L + L TI+ FD
Sbjct: 473 SLVQTLSTYLFQNSEGIIRARAMLC-QIYFLALHDQYYKARDMMLMSH--LQETISNFDV 529
Query: 88 DIQLPY 93
+ Q+ +
Sbjct: 530 NTQILF 535
>sp|O75909|CCNK_HUMAN Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2
Length = 580
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 43/129 (33%)
Query: 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQ-------- 60
+PS+ +G+ ++ + F+ ++GT+L L +A ++ H+FYM
Sbjct: 34 TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRY 93
Query: 61 ------------------------------LHDVYYKQ-----KELILTAERLLPATIAF 85
L+DV + Q KE ++ ER+L TI F
Sbjct: 94 VTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKF 153
Query: 86 DFDIQLPYE 94
D ++ PY+
Sbjct: 154 DLQVEHPYQ 162
>sp|O88874|CCNK_MOUSE Cyclin-K OS=Mus musculus GN=Ccnk PE=1 SV=3
Length = 554
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 43/129 (33%)
Query: 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQ-------- 60
+PS+ +G+ ++ + F+ ++GT+L L +A ++ H+FYM
Sbjct: 34 TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRY 93
Query: 61 ------------------------------LHDVYYKQ-----KELILTAERLLPATIAF 85
L+DV + Q KE ++ ER+L TI F
Sbjct: 94 VTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKF 153
Query: 86 DFDIQLPYE 94
D ++ PY+
Sbjct: 154 DLQVEHPYQ 162
>sp|Q2H731|EIF3C_CHAGB Eukaryotic translation initiation factor 3 subunit C OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=NIP1 PE=3 SV=1
Length = 863
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 44 VIVACAMMLCHQFYMHQLHDVYYKQKELILTAERLLPATIA-FDFDIQLPY 93
+I A AM+ Q Y LHD YYK ++++LT+ L +IA FD Q+ Y
Sbjct: 494 IIRARAML--SQIYFLALHDEYYKARDMMLTSH--LQESIANFDVATQILY 540
>sp|P39947|CCNC_RAT Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2
Length = 278
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 12 KKDGISFKKDSELWKL---YCSFLQELGTKLKLPQVIVACAMMLCHQFY 57
++ + F + E WKL + + +Q LG LKL Q ++A A + +FY
Sbjct: 20 RQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFY 68
>sp|Q2U0Q9|EIF3C_ASPOR Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=nip1 PE=3 SV=1
Length = 861
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 45 IVACAMMLCHQFYMHQLHDVYYKQKELILTAERLLPATIAFDFDIQLPY 93
I+ MLC Q Y LHD YY+ ++L+L + L FD + Q+ +
Sbjct: 489 IIRARAMLC-QIYFLALHDQYYRSRDLMLMSH-LTENISNFDVNTQILF 535
>sp|A4QSX4|EIF3C_MAGO7 Eukaryotic translation initiation factor 3 subunit C OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=NIP1 PE=3 SV=1
Length = 865
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 51 MLCHQFYMHQLHDVYYKQKELILTAERLLPATI-AFDFDIQLPY 93
MLC Q Y LHD YYK ++++L + L TI +FD Q+ Y
Sbjct: 502 MLC-QIYFLALHDDYYKSRDMMLMSH--LQETISSFDVLTQILY 542
>sp|Q0CVT0|EIF3C_ASPTN Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=nip1 PE=3 SV=1
Length = 864
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 45 IVACAMMLCHQFYMHQLHDVYYKQKELILTAERLLPATIA-FDFDIQLPY 93
I+ MLC Q Y LHD YY+ ++L+L + L IA FD Q+ +
Sbjct: 492 ILRARAMLC-QIYFLALHDQYYRSRDLMLMSH--LTENIANFDVSTQILF 538
>sp|A6S043|EIF3C_BOTFB Eukaryotic translation initiation factor 3 subunit C OS=Botryotinia
fuckeliana (strain B05.10) GN=nip1 PE=3 SV=1
Length = 869
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 51 MLCHQFYMHQLHDVYYKQKELILTAERLLPATI-AFDFDIQLPY 93
MLC Q Y LHD YYK ++++L + L TI +FD Q+ +
Sbjct: 503 MLC-QIYFEALHDNYYKARDMMLMSH--LQETINSFDVHSQILF 543
>sp|A7E471|EIF3C_SCLS1 Eukaryotic translation initiation factor 3 subunit C OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=nip1
PE=3 SV=1
Length = 870
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 51 MLCHQFYMHQLHDVYYKQKELILTAERLLPATI-AFDFDIQLPY 93
MLC Q Y LHD YYK ++++L + L TI +FD Q+ +
Sbjct: 504 MLC-QIYFEALHDNYYKARDMMLMSH--LQETINSFDVHSQILF 544
>sp|A1D9P1|EIF3C_NEOFI Eukaryotic translation initiation factor 3 subunit C OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=nip1 PE=3 SV=1
Length = 862
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 45 IVACAMMLCHQFYMHQLHDVYYKQKELILTAERLLPATIAFDFDIQLPY 93
I+ MLC Q Y LHD YY+ ++L+L + L FD Q+ +
Sbjct: 490 IIRARAMLC-QIYFLALHDQYYRSRDLMLMSH-LTENISNFDVSTQILF 536
>sp|Q4W9S8|EIF3C_ASPFU Eukaryotic translation initiation factor 3 subunit C OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=nip1 PE=3 SV=1
Length = 862
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 45 IVACAMMLCHQFYMHQLHDVYYKQKELILTAERLLPATIAFDFDIQLPY 93
I+ MLC Q Y LHD YY+ ++L+L + L FD Q+ +
Sbjct: 490 IIRARAMLC-QIYFLALHDQYYRSRDLMLMSH-LTENISNFDVSTQILF 536
>sp|B0YEH1|EIF3C_ASPFC Eukaryotic translation initiation factor 3 subunit C OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=nip1 PE=3 SV=1
Length = 862
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 45 IVACAMMLCHQFYMHQLHDVYYKQKELILTAERLLPATIAFDFDIQLPY 93
I+ MLC Q Y LHD YY+ ++L+L + L FD Q+ +
Sbjct: 490 IIRARAMLC-QIYFLALHDQYYRSRDLMLMSH-LTENISNFDVSTQILF 536
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,987,238
Number of Sequences: 539616
Number of extensions: 1485673
Number of successful extensions: 3562
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3511
Number of HSP's gapped (non-prelim): 73
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)