Query 038406
Match_columns 118
No_of_seqs 118 out of 651
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:32:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 100.0 3.2E-28 1.1E-32 182.4 10.9 116 3-118 9-172 (257)
2 2pk2_A Cyclin-T1, protein TAT; 99.9 9.1E-27 3.1E-31 182.9 8.0 116 3-118 16-179 (358)
3 3rgf_B Cyclin-C; protein kinas 99.9 5.3E-26 1.8E-30 173.4 10.6 115 4-118 21-183 (285)
4 2i53_A Cyclin K; cell cycle, t 99.9 1.2E-25 4E-30 168.2 11.1 116 3-118 19-181 (258)
5 1jkw_A Cyclin H; cell cycle, c 99.9 2.5E-24 8.4E-29 166.9 12.7 110 9-118 41-196 (323)
6 1zp2_A RNA polymerase II holoe 99.9 2.6E-22 8.9E-27 148.7 7.6 107 4-118 15-160 (235)
7 1c9b_A General transcription f 99.7 5.9E-18 2E-22 122.9 8.8 94 25-118 5-128 (207)
8 3g33_B CCND3 protein; Ser/Thr 99.6 1.4E-15 4.8E-20 116.9 7.6 113 6-118 50-201 (306)
9 2b9r_A Human cyclin B1; cell c 99.5 1E-14 3.5E-19 110.0 7.7 100 19-118 32-164 (269)
10 2cch_B Cyclin A2, cyclin-A; co 99.5 1.1E-14 3.8E-19 109.1 7.5 98 21-118 35-166 (260)
11 1ais_B TFB TFIIB, protein (tra 99.5 1.2E-14 4.1E-19 104.8 6.9 98 20-118 5-134 (200)
12 2w96_A G1/S-specific cyclin-D1 99.5 1.5E-14 5.2E-19 109.0 6.0 98 21-118 53-187 (271)
13 1g3n_C V-cyclin; cyclin-depend 99.5 5.2E-14 1.8E-18 105.3 6.0 114 5-118 29-181 (257)
14 2f2c_A Cyclin homolog, V-cycli 99.4 2.4E-13 8.4E-18 101.5 7.5 102 16-117 43-181 (254)
15 3k7a_M Transcription initiatio 99.3 8.7E-13 3E-17 102.8 3.5 93 26-118 127-261 (345)
16 1f5q_B Gamma herpesvirus cycli 99.2 1.2E-11 4.1E-16 92.8 7.0 99 18-116 42-177 (252)
17 1w98_B Cyclin E, G1/S-specific 99.2 6.7E-11 2.3E-15 89.7 7.8 86 21-106 46-165 (283)
18 4bbr_M Transcription initiatio 98.5 1E-07 3.5E-12 74.3 4.8 93 26-118 127-261 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 92.6 0.42 1.4E-05 36.4 7.1 72 30-102 79-184 (293)
20 1wi3_A DNA-binding protein SAT 54.7 32 0.0011 20.6 6.3 45 14-61 12-66 (71)
21 4gwg_A 6-phosphogluconate dehy 38.4 58 0.002 26.0 5.5 56 5-60 380-438 (484)
22 2wh0_Q Pkcev3, protein kinase 37.3 28 0.00095 17.0 2.2 18 69-86 12-29 (31)
23 2kta_A Putative helicase; PSI, 36.5 11 0.00038 22.5 0.8 24 70-93 47-71 (74)
24 2agh_C Zinc finger protein HRX 31.9 16 0.00053 18.0 0.7 9 6-14 16-24 (31)
25 1ais_B TFB TFIIB, protein (tra 26.4 53 0.0018 22.3 3.1 27 30-56 110-136 (200)
26 2wjn_H Reaction center protein 24.3 67 0.0023 23.8 3.4 27 3-29 215-243 (258)
27 1rzh_H Reaction center protein 23.9 67 0.0023 23.8 3.3 27 3-29 210-238 (260)
28 1m06_J J protein, small core p 20.9 42 0.0014 15.8 1.1 11 5-15 3-13 (26)
29 1gff_3 Bacteriophage G4 capsid 20.8 33 0.0011 16.2 0.7 11 5-15 4-14 (26)
30 2jm6_A NOXA; apoptosis, BCL-2, 20.3 28 0.00095 16.7 0.4 17 29-45 8-24 (27)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.95 E-value=3.2e-28 Score=182.37 Aligned_cols=116 Identities=24% Similarity=0.419 Sum_probs=108.8
Q ss_pred hhhhhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH-------------------
Q 038406 3 LHRREFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD------------------- 63 (118)
Q Consensus 3 ~~~l~~tPS~~~gi~~~~E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~------------------- 63 (118)
.+++++|||+++|+++++|...|..++++|.++|..|++|+.|++||++||||||.++|+.
T Consensus 9 ~e~l~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~E 88 (257)
T 2ivx_A 9 REQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVE 88 (257)
T ss_dssp HHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999999999999999999999999999999999999877
Q ss_pred -------H----------------------HHHHHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCCHHHHHHHh
Q 038406 64 -------V----------------------YYKQKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLVCDLAKSSM 114 (118)
Q Consensus 64 -------~----------------------~~~~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~~~l~q~Aw 114 (118)
. |+..+++|+.+|+.||++||||+.+.|||.++..+++.++.++++.+.||
T Consensus 89 E~p~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~ 168 (257)
T 2ivx_A 89 EQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSY 168 (257)
T ss_dssp TCCCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHH
Confidence 1 23348999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q 038406 115 EFHK 118 (118)
Q Consensus 115 ~~~N 118 (118)
.++|
T Consensus 169 ~~~~ 172 (257)
T 2ivx_A 169 FMAT 172 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 2
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.93 E-value=9.1e-27 Score=182.93 Aligned_cols=116 Identities=25% Similarity=0.395 Sum_probs=108.3
Q ss_pred hhhhhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH-------------------
Q 038406 3 LHRREFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD------------------- 63 (118)
Q Consensus 3 ~~~l~~tPS~~~gi~~~~E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~------------------- 63 (118)
.++|++|||+++|+++++|...|..+++||.++|..|++|+.|++||++||||||.++|+.
T Consensus 16 ~eeL~~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~E 95 (358)
T 2pk2_A 16 REQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVE 95 (358)
T ss_dssp SHHHHTCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhc
Confidence 3689999999999999999999999999999999999999999999999999999999877
Q ss_pred -------H----------------------HHHHHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCCHHHHHHHh
Q 038406 64 -------V----------------------YYKQKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLVCDLAKSSM 114 (118)
Q Consensus 64 -------~----------------------~~~~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~~~l~q~Aw 114 (118)
. |+..+++|+.+|+.||++|+||+.+.|||.+|..+++.++.++++.+.||
T Consensus 96 E~p~~l~d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~ 175 (358)
T 2pk2_A 96 EQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSY 175 (358)
T ss_dssp TCCCCHHHHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 0 22347899999999999999999999999999999999999999999999
Q ss_pred hhcC
Q 038406 115 EFHK 118 (118)
Q Consensus 115 ~~~N 118 (118)
.++|
T Consensus 176 ~ll~ 179 (358)
T 2pk2_A 176 FMAT 179 (358)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 3
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.93 E-value=5.3e-26 Score=173.37 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=105.3
Q ss_pred hhhhhCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH-------------------
Q 038406 4 HRREFSPS-KKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD------------------- 63 (118)
Q Consensus 4 ~~l~~tPS-~~~gi~~~~E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~------------------- 63 (118)
+++.++|+ ..+|+++++|...|..++++|+++|.+|++|+.|++||++||||||.++|+.
T Consensus 21 ~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~E 100 (285)
T 3rgf_B 21 QDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVE 100 (285)
T ss_dssp HHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhh
Confidence 57777776 6799999999999999999999999999999999999999999999999987
Q ss_pred --------H----HH----------------HHHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCCHHHHHHHhh
Q 038406 64 --------V----YY----------------KQKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLVCDLAKSSME 115 (118)
Q Consensus 64 --------~----~~----------------~~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~~~l~q~Aw~ 115 (118)
. .. ..+++|+.+|+.||++||||+.+.|||+++..|++.++.++++.+.||.
T Consensus 101 E~~~~~~~di~~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~ 180 (285)
T 3rgf_B 101 EFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWR 180 (285)
T ss_dssp TSCCCCHHHHHHHHHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHHHH
Confidence 0 10 1358999999999999999999999999999999999999999999999
Q ss_pred hcC
Q 038406 116 FHK 118 (118)
Q Consensus 116 ~~N 118 (118)
++|
T Consensus 181 ~l~ 183 (285)
T 3rgf_B 181 IVN 183 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 4
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.93 E-value=1.2e-25 Score=168.22 Aligned_cols=116 Identities=24% Similarity=0.386 Sum_probs=106.8
Q ss_pred hhhhhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH-------------------
Q 038406 3 LHRREFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD------------------- 63 (118)
Q Consensus 3 ~~~l~~tPS~~~gi~~~~E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~------------------- 63 (118)
.+++++|||+.+|++++.|...|..++++|.++|..+++|+.|++||++||||||.++|+.
T Consensus 19 ~~el~~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~e 98 (258)
T 2i53_A 19 KKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVE 98 (258)
T ss_dssp GGGGGGCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccc
Confidence 3789999999999999999999999999999999999999999999999999999999877
Q ss_pred -------HHH-----------------HHHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCCH----HHHHHHhh
Q 038406 64 -------VYY-----------------KQKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLVC----DLAKSSME 115 (118)
Q Consensus 64 -------~~~-----------------~~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~~----~l~q~Aw~ 115 (118)
.+. ..+++|+.+|+.||++|||++.+.|||.++..+++.++.+. ++.+.||.
T Consensus 99 E~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~ 178 (258)
T 2i53_A 99 ETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWT 178 (258)
T ss_dssp TCCCCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 111 03789999999999999999999999999999999999885 79999999
Q ss_pred hcC
Q 038406 116 FHK 118 (118)
Q Consensus 116 ~~N 118 (118)
++|
T Consensus 179 l~~ 181 (258)
T 2i53_A 179 FVN 181 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 5
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.91 E-value=2.5e-24 Score=166.91 Aligned_cols=110 Identities=25% Similarity=0.327 Sum_probs=99.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHhhhcchH-----------------------
Q 038406 9 SPSKKDGISFKKDSELWKLYCSFLQELGTKLK--LPQVIVACAMMLCHQFYMHQLHD----------------------- 63 (118)
Q Consensus 9 tPS~~~gi~~~~E~~~r~~~~~~I~~~g~~L~--lp~~~~aTA~~~~hRFy~~~S~~----------------------- 63 (118)
.||..+|+|+++|..+|.+++.+|+++|..|+ +|+.|++||++||||||.++|++
T Consensus 41 ~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~ 120 (323)
T 1jkw_A 41 LPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV 120 (323)
T ss_dssp CTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCC
Confidence 47889999999999999999999999999999 99999999999999999999987
Q ss_pred ---H-----------HHHHHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHc-------CCCHHHHHHHhhhcC
Q 038406 64 ---V-----------YYKQKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRL-------DLVCDLAKSSMEFHK 118 (118)
Q Consensus 64 ---~-----------~~~~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l-------~~~~~l~q~Aw~~~N 118 (118)
. ....++.|+.+|+.||++||||+.|.|||+++..|++.+ +.++++.+.||.++|
T Consensus 121 ~l~d~v~~~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~ 196 (323)
T 1jkw_A 121 SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLN 196 (323)
T ss_dssp CHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 1 124579999999999999999999999999999999876 223679999999986
No 6
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.86 E-value=2.6e-22 Score=148.74 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=95.7
Q ss_pred hhhhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH--------------------
Q 038406 4 HRREFSPSKKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD-------------------- 63 (118)
Q Consensus 4 ~~l~~tPS~~~gi~~~~E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~-------------------- 63 (118)
+++.++||.++| | |..++++|.++|..|++|+.|++||++||+|||.++|++
T Consensus 15 ~~l~~~~~~~~~-----~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~E 86 (235)
T 1zp2_A 15 DLESLEPTCLSK-----D---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVE 86 (235)
T ss_dssp SCTTSSCCCSCH-----H---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCcchhH-----H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccc
Confidence 678888887653 2 999999999999999999999999999999999987655
Q ss_pred -------HH------------HHHHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCCHHHHHHHhhhcC
Q 038406 64 -------VY------------YKQKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLVCDLAKSSMEFHK 118 (118)
Q Consensus 64 -------~~------------~~~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~~~l~q~Aw~~~N 118 (118)
.+ ...+++|+.+|+.||++||||+.+.|||+++..+++.++.++++.+.||.++|
T Consensus 87 e~~~~l~d~~~~~~~~~~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~ 160 (235)
T 1zp2_A 87 ECPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVN 160 (235)
T ss_dssp TCCCCHHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHccchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11 12478999999999999999999999999999999999999999999999986
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.74 E-value=5.9e-18 Score=122.91 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH-----------HHH-------------------HHHHHHHH
Q 038406 25 WKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD-----------VYY-------------------KQKELILT 74 (118)
Q Consensus 25 r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~-----------~~~-------------------~~~~~Il~ 74 (118)
...|+++|+++|..|++|+.|++||++||||||.+++++ .|- --+++|..
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~~i~~ 84 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGR 84 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHHH
Confidence 458999999999999999999999999999999999887 111 12578999
Q ss_pred HHHHHHHHcCcceeecCChHHHHHHHHHcCCCHHHHHHHhhhcC
Q 038406 75 AERLLPATIAFDFDIQLPYEPLVAAFTRLDLVCDLAKSSMEFHK 118 (118)
Q Consensus 75 ~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~~~l~q~Aw~~~N 118 (118)
+|+.||++|||++.+.|||.++..+++.+++++++.+.||.++|
T Consensus 85 ~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~ 128 (207)
T 1c9b_A 85 CFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIAR 128 (207)
T ss_dssp HHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998875
No 8
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=116.91 Aligned_cols=113 Identities=12% Similarity=0.155 Sum_probs=94.1
Q ss_pred hhhCCC--CCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH--------------------
Q 038406 6 REFSPS--KKDGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD-------------------- 63 (118)
Q Consensus 6 l~~tPS--~~~gi~~~~E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~-------------------- 63 (118)
.+..|+ ..+|+..+-+...|...++||.++|..+++++.|+++|+.|++||+.++++.
T Consensus 50 ~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE 129 (306)
T 3g33_B 50 ERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRE 129 (306)
T ss_dssp GGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 334444 4466666667789999999999999999999999999999999999988766
Q ss_pred -------HHH------HHHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCC----HHHHHHHhhhcC
Q 038406 64 -------VYY------KQKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLV----CDLAKSSMEFHK 118 (118)
Q Consensus 64 -------~~~------~~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~----~~l~q~Aw~~~N 118 (118)
.+. --+++|+.+|+.||++|+|++.+.+||.++..|++.++.+ ..+.+.||.++|
T Consensus 130 ~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~ 201 (306)
T 3g33_B 130 TTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLA 201 (306)
T ss_dssp SSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence 111 1268999999999999999999999999999999999876 236688898764
No 9
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.55 E-value=1e-14 Score=109.98 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH---------------------------HHH-----
Q 038406 19 KKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD---------------------------VYY----- 66 (118)
Q Consensus 19 ~~E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~---------------------------~~~----- 66 (118)
+-....|...++||.++|..+++++.|.++|+.|++||+..+++. .+.
T Consensus 32 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~ 111 (269)
T 2b9r_A 32 EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDN 111 (269)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcC
Confidence 334568999999999999999999999999999999999988766 111
Q ss_pred -HHHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCCHHHHHHHhhhcC
Q 038406 67 -KQKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLVCDLAKSSMEFHK 118 (118)
Q Consensus 67 -~~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~~~l~q~Aw~~~N 118 (118)
-.+++|+.+|+.||++|+|++.+.+|+.++..+++.++.+.++.+.||.++|
T Consensus 112 ~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l~e 164 (269)
T 2b9r_A 112 TYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLME 164 (269)
T ss_dssp SSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1378999999999999999999999999999999999999889999998864
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.54 E-value=1.1e-14 Score=109.13 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH---------------------------HHH------H
Q 038406 21 DSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD---------------------------VYY------K 67 (118)
Q Consensus 21 E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~---------------------------~~~------~ 67 (118)
....|...++||.++|..+++++.|+++|+.|++||+.++++. .+. -
T Consensus 35 ~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~ 114 (260)
T 2cch_B 35 TNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTY 114 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCc
Confidence 3467999999999999999999999999999999999988766 111 1
Q ss_pred HHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCCH-HHHHHHhhhcC
Q 038406 68 QKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLVC-DLAKSSMEFHK 118 (118)
Q Consensus 68 ~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~~-~l~q~Aw~~~N 118 (118)
.+++|+.+|+.||++|+|++.+.+|+.++..+++.++.+. ++.+.||.++|
T Consensus 115 ~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e 166 (260)
T 2cch_B 115 TKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGE 166 (260)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999875 88999998764
No 11
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.53 E-value=1.2e-14 Score=104.78 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH-----------HH-------------------HHHH
Q 038406 20 KDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD-----------VY-------------------YKQK 69 (118)
Q Consensus 20 ~E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~-----------~~-------------------~~~~ 69 (118)
.|..+ ..++++|.++|..|++|+.++.||..+|+||+..+++. .| .--+
T Consensus 5 ~er~l-~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~ 83 (200)
T 1ais_B 5 AERNL-AFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDK 83 (200)
T ss_dssp ---CH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCH
T ss_pred HHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCH
Confidence 34444 48999999999999999999999999999999987766 11 1125
Q ss_pred HHHHHHHHHHHHHcCcceee--cCChHHHHHHHHHcCCCHHHHHHHhhhcC
Q 038406 70 ELILTAERLLPATIAFDFDI--QLPYEPLVAAFTRLDLVCDLAKSSMEFHK 118 (118)
Q Consensus 70 ~~Il~~E~~iL~~L~Fdl~v--~hP~~~l~~~~~~l~~~~~l~q~Aw~~~N 118 (118)
.+|..+|+.|++.|||++.+ .||+.++..+++.+++++++.+.||.++|
T Consensus 84 ~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~ 134 (200)
T 1ais_B 84 KEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILD 134 (200)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 78999999999999999999 99999999999999999999999999874
No 12
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.51 E-value=1.5e-14 Score=108.95 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH---------------------------HHH------H
Q 038406 21 DSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD---------------------------VYY------K 67 (118)
Q Consensus 21 E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~---------------------------~~~------~ 67 (118)
....|...++||.+++..+++++.|+++|+.|++||+.++++. .+. -
T Consensus 53 ~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~ 132 (271)
T 2w96_A 53 LPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSI 132 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSS
T ss_pred CHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCC
Confidence 4568999999999999999999999999999999999988766 111 1
Q ss_pred HHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCCHH----HHHHHhhhcC
Q 038406 68 QKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLVCD----LAKSSMEFHK 118 (118)
Q Consensus 68 ~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~~~----l~q~Aw~~~N 118 (118)
.+++|+.+|+.||++|+|++.+.+|+.++..+++.++.+.+ +.+.||.++|
T Consensus 133 ~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~ 187 (271)
T 2w96_A 133 RPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVA 187 (271)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999998743 3467888764
No 13
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.47 E-value=5.2e-14 Score=105.30 Aligned_cols=114 Identities=13% Similarity=0.110 Sum_probs=91.1
Q ss_pred hhhhCCCCC--CCCCHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH-------------------
Q 038406 5 RREFSPSKK--DGISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD------------------- 63 (118)
Q Consensus 5 ~l~~tPS~~--~gi~~~~E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~------------------- 63 (118)
+.+..|+.. ++..++-....|...++||.+++..+++++.|.++|+.|++||+.++++.
T Consensus 29 E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~e 108 (257)
T 1g3n_C 29 EPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLR 108 (257)
T ss_dssp GGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHc
Confidence 445556431 22233344568999999999999999999999999999999999988766
Q ss_pred --------HHH------HHHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCCH----HHHHHHhhhcC
Q 038406 64 --------VYY------KQKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLVC----DLAKSSMEFHK 118 (118)
Q Consensus 64 --------~~~------~~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~~----~l~q~Aw~~~N 118 (118)
.+. --+++|+.+|+.||++|+|++.+.+|+.++..+++.++.+. .+.+.||.++|
T Consensus 109 E~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le 181 (257)
T 1g3n_C 109 SLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLIT 181 (257)
T ss_dssp CSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence 111 13689999999999999999999999999999999998762 24677887763
No 14
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.43 E-value=2.4e-13 Score=101.46 Aligned_cols=102 Identities=10% Similarity=0.150 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH----------------HH--------------
Q 038406 16 ISFKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD----------------VY-------------- 65 (118)
Q Consensus 16 i~~~~E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~----------------~~-------------- 65 (118)
..++-....|...++||.+++..+++++.|.++|+.|+.||+.++++. -+
T Consensus 43 ~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 122 (254)
T 2f2c_A 43 IQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYL 122 (254)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTT
T ss_pred cCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 334445678999999999999999999999999999999999988765 01
Q ss_pred ---HHHHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCCHH----HHHHHhhhc
Q 038406 66 ---YKQKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLVCD----LAKSSMEFH 117 (118)
Q Consensus 66 ---~~~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~~~----l~q~Aw~~~ 117 (118)
.--+++|+.+|+.||++|+|++.+.+|+.++..+++.++.+.+ +.+.||.++
T Consensus 123 ~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll 181 (254)
T 2f2c_A 123 SCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTI 181 (254)
T ss_dssp C---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 1136899999999999999999999999999999999988733 356788765
No 15
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.30 E-value=8.7e-13 Score=102.80 Aligned_cols=93 Identities=10% Similarity=0.065 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH-----------------------HHHH-------HHHHHHHH
Q 038406 26 KLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD-----------------------VYYK-------QKELILTA 75 (118)
Q Consensus 26 ~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~-----------------------~~~~-------~~~~Il~~ 75 (118)
..++..|.++|..|++|+.++.||+.+|+||+..++++ .+.+ -+++|..+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v~~keIgr~ 206 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKT 206 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHHHHHHH
Confidence 47889999999999999999999999999999988776 1111 25789999
Q ss_pred HHHHHHHcC------------cceeecCChHHHHHHHHHcCCCHHHHHHHhhhcC
Q 038406 76 ERLLPATIA------------FDFDIQLPYEPLVAAFTRLDLVCDLAKSSMEFHK 118 (118)
Q Consensus 76 E~~iL~~L~------------Fdl~v~hP~~~l~~~~~~l~~~~~l~q~Aw~~~N 118 (118)
++.|++.|+ |++.+.||+.++..|++.|+++.++.+.||.++|
T Consensus 207 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~ 261 (345)
T 3k7a_M 207 LNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAK 261 (345)
T ss_dssp HHHHHHHHTCC--------------------------------------------
T ss_pred HHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999986
No 16
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.25 E-value=1.2e-11 Score=92.78 Aligned_cols=99 Identities=12% Similarity=0.093 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH----------------HHH---------------
Q 038406 18 FKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD----------------VYY--------------- 66 (118)
Q Consensus 18 ~~~E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~----------------~~~--------------- 66 (118)
.+-....|...++||.+++..+++++.|..+|+.|+.||..++++. -|+
T Consensus 42 ~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~ 121 (252)
T 1f5q_B 42 QHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCG 121 (252)
T ss_dssp HHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhC
Confidence 3444567999999999999999999999999999999999987765 011
Q ss_pred --HHHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCCHH----HHHHHhhh
Q 038406 67 --KQKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLVCD----LAKSSMEF 116 (118)
Q Consensus 67 --~~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~~~----l~q~Aw~~ 116 (118)
--+++|+.+|..||++|+|++.+-+|+.++..+++.++.+.+ +.+.|+.+
T Consensus 122 ~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~ 177 (252)
T 1f5q_B 122 GATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPK 177 (252)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 126899999999999999999999999999999999987732 44455544
No 17
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.17 E-value=6.7e-11 Score=89.73 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh-cchH---------------------------HHH------
Q 038406 21 DSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMH-QLHD---------------------------VYY------ 66 (118)
Q Consensus 21 E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~-~S~~---------------------------~~~------ 66 (118)
....|...++||.+++..+++++.|+++|+.|++||+.. +++. .+.
T Consensus 46 ~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~ 125 (283)
T 1w98_B 46 QPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGA 125 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCC
Confidence 346899999999999999999999999999999999987 4654 111
Q ss_pred HHHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHcCCC
Q 038406 67 KQKELILTAERLLPATIAFDFDIQLPYEPLVAAFTRLDLV 106 (118)
Q Consensus 67 ~~~~~Il~~E~~iL~~L~Fdl~v~hP~~~l~~~~~~l~~~ 106 (118)
-.+++|+.+|+.||++|+|++.+.+|+.++..+++.++.+
T Consensus 126 ~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~ 165 (283)
T 1w98_B 126 CSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLN 165 (283)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccC
Confidence 1278999999999999999999999999999999987654
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.49 E-value=1e-07 Score=74.32 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcchH-----------HHH-------------------HHHHHHHHH
Q 038406 26 KLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQLHD-----------VYY-------------------KQKELILTA 75 (118)
Q Consensus 26 ~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S~~-----------~~~-------------------~~~~~Il~~ 75 (118)
..+...|.++|..|++|..++.+|..+|+|++..+.++ .|- --+.+|-..
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~keigr~ 206 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKT 206 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHHHHH
Confidence 46888999999999999999999999999999877665 121 124688889
Q ss_pred HHHHHHHcCcc------------eeecCChHHHHHHHHHcCCCHHHHHHHhhhcC
Q 038406 76 ERLLPATIAFD------------FDIQLPYEPLVAAFTRLDLVCDLAKSSMEFHK 118 (118)
Q Consensus 76 E~~iL~~L~Fd------------l~v~hP~~~l~~~~~~l~~~~~l~q~Aw~~~N 118 (118)
.+.|.+.|+.. +...+|..|+..|+..|+++.++.+.||.+++
T Consensus 207 ~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~ 261 (345)
T 4bbr_M 207 LNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAK 261 (345)
T ss_dssp HHHHHHCC-----------------------------------------------
T ss_pred HHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999974 66789999999999999999999999998874
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=92.61 E-value=0.42 Score=36.36 Aligned_cols=72 Identities=6% Similarity=0.048 Sum_probs=52.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcc-hH----------------------------HHHH-----HHHHHHHH
Q 038406 30 SFLQELGTKLKLPQVIVACAMMLCHQFYMHQL-HD----------------------------VYYK-----QKELILTA 75 (118)
Q Consensus 30 ~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~S-~~----------------------------~~~~-----~~~~Il~~ 75 (118)
+|+.++-..-+++..++-.|.+|+.|+-.++. +. .+|. -.+++-.+
T Consensus 79 ~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~L 158 (293)
T 2pmi_B 79 NYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNIL 158 (293)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHH
Confidence 57888888888999999999999999977532 11 2222 15899999
Q ss_pred HHHHHHHcCcceeecCChHHHHHHHHH
Q 038406 76 ERLLPATIAFDFDIQLPYEPLVAAFTR 102 (118)
Q Consensus 76 E~~iL~~L~Fdl~v~hP~~~l~~~~~~ 102 (118)
|+..|..|+|++.|. +..+..-++..
T Consensus 159 E~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 159 ENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 999999999999887 33444333333
No 20
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=54.72 E-value=32 Score=20.56 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHH--------HHHHHHhhcCCCHHHHHHHHHHHH--HHhhhcc
Q 038406 14 DGISFKKDSELWKLYCS--------FLQELGTKLKLPQVIVACAMMLCH--QFYMHQL 61 (118)
Q Consensus 14 ~gi~~~~E~~~r~~~~~--------~I~~~g~~L~lp~~~~aTA~~~~h--RFy~~~S 61 (118)
.-++.++=..+...... -+.+++..++||..+| +++|+ |||..++
T Consensus 12 T~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~I---qVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 12 TKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTI---IKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHH---HHHHHHHHHHCCSS
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHH---HHhhccceeeecCC
Confidence 35676666666654444 6788999999998865 67885 8988764
No 21
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=38.35 E-value=58 Score=25.95 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=38.7
Q ss_pred hhhhCCCCCC-CCC--HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 038406 5 RREFSPSKKD-GIS--FKKDSELWKLYCSFLQELGTKLKLPQVIVACAMMLCHQFYMHQ 60 (118)
Q Consensus 5 ~l~~tPS~~~-gi~--~~~E~~~r~~~~~~I~~~g~~L~lp~~~~aTA~~~~hRFy~~~ 60 (118)
..+..|.... -++ +.++..-.....+-+...+...++|..++++|..||-+|-..+
T Consensus 380 a~~~~~~l~~ll~~~~f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y~~~~r~~~ 438 (484)
T 4gwg_A 380 AFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEM 438 (484)
T ss_dssp HHHHCTTCSCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSC
T ss_pred HHHhCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 3455565432 122 3445555555566688899999999999999999999995433
No 22
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=37.29 E-value=28 Score=16.95 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHcCcc
Q 038406 69 KELILTAERLLPATIAFD 86 (118)
Q Consensus 69 ~~~Il~~E~~iL~~L~Fd 86 (118)
-+.|-+.|.-|-+.|.||
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 367888999999999997
No 23
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=36.48 E-value=11 Score=22.54 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=17.0
Q ss_pred HHHHHHHHH-HHHHcCcceeecCCh
Q 038406 70 ELILTAERL-LPATIAFDFDIQLPY 93 (118)
Q Consensus 70 ~~Il~~E~~-iL~~L~Fdl~v~hP~ 93 (118)
+..|..|++ .|+.|||+.+.+|-|
T Consensus 47 ~g~Ls~eRi~~L~~lGf~w~~~~~~ 71 (74)
T 2kta_A 47 QGKLPNDRRLLLDKIGFVWSLEHHH 71 (74)
T ss_dssp HTCCCHHHHHHHHHHTCCCCCCSCC
T ss_pred cCCCCHHHHHHHHHcCCEecccccc
Confidence 334455553 688999999988765
No 24
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=31.86 E-value=16 Score=18.01 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=7.1
Q ss_pred hhhCCCCCC
Q 038406 6 REFSPSKKD 14 (118)
Q Consensus 6 l~~tPS~~~ 14 (118)
++||||+..
T Consensus 16 lkntpsmqa 24 (31)
T 2agh_C 16 LKNTPSMQA 24 (31)
T ss_dssp HHHSCCCCC
T ss_pred HhCChhHHH
Confidence 679999863
No 25
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=26.44 E-value=53 Score=22.28 Aligned_cols=27 Identities=11% Similarity=0.281 Sum_probs=11.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 038406 30 SFLQELGTKLKLPQVIVACAMMLCHQF 56 (118)
Q Consensus 30 ~~I~~~g~~L~lp~~~~aTA~~~~hRF 56 (118)
.+|.+++..|++|..+.-+|..++.+.
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~ 136 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEA 136 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 26
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=24.32 E-value=67 Score=23.80 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=21.8
Q ss_pred hhhhhhCCCCCC--CCCHHHHHHHHHHHH
Q 038406 3 LHRREFSPSKKD--GISFKKDSELWKLYC 29 (118)
Q Consensus 3 ~~~l~~tPS~~~--gi~~~~E~~~r~~~~ 29 (118)
.+|++++|+..+ -+|..+|.+++.++.
T Consensus 215 keQve~~P~~~~~~~Vt~~eEekI~~YYG 243 (258)
T 2wjn_H 215 SEQFANVPRLQSRDQITLREEDKVSAYYA 243 (258)
T ss_dssp GGGGGGSCCCSSSSCCBHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCCcCHHHHHHHHhccC
Confidence 479999999975 589999888886553
No 27
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=23.94 E-value=67 Score=23.84 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=21.9
Q ss_pred hhhhhhCCCCC--CCCCHHHHHHHHHHHH
Q 038406 3 LHRREFSPSKK--DGISFKKDSELWKLYC 29 (118)
Q Consensus 3 ~~~l~~tPS~~--~gi~~~~E~~~r~~~~ 29 (118)
.+|++++|+.. +-+|..+|.+++.++.
T Consensus 210 keQve~~P~~~~~~~Vt~~eEekI~~YYG 238 (260)
T 1rzh_H 210 SDLFAGIPTIKSPTEVTLLEEDKICGYVA 238 (260)
T ss_dssp GGGSTTSCCCSSTTCCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCCcCHHHHHHHHhccC
Confidence 47999999997 4589999988886554
No 28
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=20.95 E-value=42 Score=15.83 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=8.6
Q ss_pred hhhhCCCCCCC
Q 038406 5 RREFSPSKKDG 15 (118)
Q Consensus 5 ~l~~tPS~~~g 15 (118)
..+.|||++.|
T Consensus 3 ~~rrs~~r~kg 13 (26)
T 1m06_J 3 KARRSPSRRKG 13 (26)
T ss_dssp GGGSCCCCCSS
T ss_pred ccccCCCcCCc
Confidence 36789999876
No 29
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=20.76 E-value=33 Score=16.16 Aligned_cols=11 Identities=27% Similarity=0.184 Sum_probs=8.4
Q ss_pred hhhhCCCCCCC
Q 038406 5 RREFSPSKKDG 15 (118)
Q Consensus 5 ~l~~tPS~~~g 15 (118)
.++.|||+..|
T Consensus 4 s~rrs~~r~kg 14 (26)
T 1gff_3 4 SIRRSGGKSKG 14 (26)
T ss_pred ccccCCCCCCc
Confidence 46789998766
No 30
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=20.32 E-value=28 Score=16.67 Aligned_cols=17 Identities=35% Similarity=0.745 Sum_probs=12.5
Q ss_pred HHHHHHHHhhcCCCHHH
Q 038406 29 CSFLQELGTKLKLPQVI 45 (118)
Q Consensus 29 ~~~I~~~g~~L~lp~~~ 45 (118)
|..++++|.+|++.|..
T Consensus 8 caqlr~~gdkln~rqkl 24 (27)
T 2jm6_A 8 CAQLRRIGDKVNLRQKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 44678888888877764
Done!