BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038407
(528 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 168 bits (425), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 138/444 (31%), Positives = 211/444 (47%), Gaps = 68/444 (15%)
Query: 74 NNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNF-LISLDLSNNQLTGEIPEH 132
NN G +P+ + LK ++S N F +P S N++ L++LDLS+N +G I +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 133 LAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFR-EILESLSKCSSLEGLY 191
L P+N L+ L L N F +I +LS CS L L+
Sbjct: 385 LCQN-------------------PKN----TLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 192 LSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHH 251
LS N LSG IP LG+LS L+ + L N EG IP E + +L+ L + N+++G
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 252 ASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLD--------- 302
+ + + L++N GE+P + +L L ++ LSNN SG+IP L
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 541
Query: 303 -NTTLHESYIDTS----SPESSETSFVDEGFAFYKEKKIQETF----------------- 340
NT L I + S + + + + + K +++
Sbjct: 542 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 601
Query: 341 -KFTTKN----IAYTYRGRVISYLSE------LDLSYNKLIGQIPPQIGNLTRIQTLNLS 389
+ +T+N + Y G LD+SYN L G IP +IG++ + LNL
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 390 YNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT 449
+N+++GSIP +L+ + LDLS NKLDG+IP + L L ++++NNLSG IPE
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-M 720
Query: 450 AQFATFNESSYEGNPFLCGLPLPK 473
QF TF + + NP LCG PLP+
Sbjct: 721 GQFETFPPAKFLNNPGLCGYPLPR 744
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 130/441 (29%), Positives = 200/441 (45%), Gaps = 61/441 (13%)
Query: 61 HCHKSLMLLDVSNNNLQGHIPVKIGDFLPS---LKYFNISMNAFDSSIPTSFG-NMNFLI 116
C SL LD+S N+L G PV L S LK+ N+S N D S G +N L
Sbjct: 94 KCSASLTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 151
Query: 117 SLDLSNNQLTGE--IPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHF 174
LDLS N ++G + L+ GC + G + NL L + N+F
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR--CVNLEFLDVSSNNF 209
Query: 175 REILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS 234
+ L CS+L+ L +S N LSG R + + L+ + + N F GPIP L S
Sbjct: 210 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKS 267
Query: 235 LQILNISDNN--------ISGIYHHASILSLSKDQLVLA-----------------HNNF 269
LQ L++++N +SG + L LS + A NNF
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 270 EGEVPIQ-LCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSS------------- 315
GE+P+ L ++ L+++DLS N SG +P L N + +D SS
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 316 -PESS--ETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVI-------SYLSELDLS 365
P+++ E + GF + + + ++++ Y I S L +L L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 366 YNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQL 425
N L G+IP ++ + ++TL L +N+LTG IPS SN ++ + LS N+L G+IP +
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 426 VELNTLAVFNVAHNNLSGKIP 446
L LA+ +++N+ SG IP
Sbjct: 508 GRLENLAILKLSNNSFSGNIP 528
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 99/233 (42%), Gaps = 9/233 (3%)
Query: 69 LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE 128
+ +SNN L G IP IG L +L +S N+F +IP G+ LI LDL+ N G
Sbjct: 492 ISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 129 IPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGN--HFREIL-ESLSKCS 185
IP + +++ +N + + GN F+ I E L++ S
Sbjct: 551 IPAAMFK---QSGKIAANFIAGKRYVYIKNDGMK--KECHGAGNLLEFQGIRSEQLNRLS 605
Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI 245
+ ++ G N + + + N G IP E + L ILN+ N+I
Sbjct: 606 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 246 SGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298
SG + L L+ N +G +P + L L IDLSNN LSG IP
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
S+M LD+S N L G+IP +IG +P L N+ N SIP G++ L LDLS+N+
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 125 LTGEIPEHLA 134
L G IP+ ++
Sbjct: 689 LDGRIPQAMS 698
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 66 LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQL 125
L +L++ +N++ G IP ++GD L L ++S N D IP + + L +DLSNN L
Sbjct: 655 LFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 126 TGEIPE 131
+G IPE
Sbjct: 714 SGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 138/444 (31%), Positives = 211/444 (47%), Gaps = 68/444 (15%)
Query: 74 NNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNF-LISLDLSNNQLTGEIPEH 132
NN G +P+ + LK ++S N F +P S N++ L++LDLS+N +G I +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 133 LAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFR-EILESLSKCSSLEGLY 191
L P+N L+ L L N F +I +LS CS L L+
Sbjct: 388 LCQN-------------------PKN----TLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 192 LSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHH 251
LS N LSG IP LG+LS L+ + L N EG IP E + +L+ L + N+++G
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 252 ASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLD--------- 302
+ + + L++N GE+P + +L L ++ LSNN SG+IP L
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 303 -NTTLHESYIDTS----SPESSETSFVDEGFAFYKEKKIQETF----------------- 340
NT L I + S + + + + + K +++
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604
Query: 341 -KFTTKN----IAYTYRGRVISYLSE------LDLSYNKLIGQIPPQIGNLTRIQTLNLS 389
+ +T+N + Y G LD+SYN L G IP +IG++ + LNL
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 390 YNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT 449
+N+++GSIP +L+ + LDLS NKLDG+IP + L L ++++NNLSG IPE
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-M 723
Query: 450 AQFATFNESSYEGNPFLCGLPLPK 473
QF TF + + NP LCG PLP+
Sbjct: 724 GQFETFPPAKFLNNPGLCGYPLPR 747
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 130/441 (29%), Positives = 200/441 (45%), Gaps = 61/441 (13%)
Query: 61 HCHKSLMLLDVSNNNLQGHIPVKIGDFLPS---LKYFNISMNAFDSSIPTSFG-NMNFLI 116
C SL LD+S N+L G PV L S LK+ N+S N D S G +N L
Sbjct: 97 KCSASLTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 117 SLDLSNNQLTGE--IPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHF 174
LDLS N ++G + L+ GC + G + NL L + N+F
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR--CVNLEFLDVSSNNF 212
Query: 175 REILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS 234
+ L CS+L+ L +S N LSG R + + L+ + + N F GPIP L S
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKS 270
Query: 235 LQILNISDNN--------ISGIYHHASILSLSKDQLVLA-----------------HNNF 269
LQ L++++N +SG + L LS + A NNF
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 270 EGEVPIQ-LCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSS------------- 315
GE+P+ L ++ L+++DLS N SG +P L N + +D SS
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 316 -PESS--ETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVI-------SYLSELDLS 365
P+++ E + GF + + + ++++ Y I S L +L L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 366 YNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQL 425
N L G+IP ++ + ++TL L +N+LTG IPS SN ++ + LS N+L G+IP +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 426 VELNTLAVFNVAHNNLSGKIP 446
L LA+ +++N+ SG IP
Sbjct: 511 GRLENLAILKLSNNSFSGNIP 531
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 99/233 (42%), Gaps = 9/233 (3%)
Query: 69 LDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE 128
+ +SNN L G IP IG L +L +S N+F +IP G+ LI LDL+ N G
Sbjct: 495 ISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 129 IPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGN--HFREIL-ESLSKCS 185
IP + +++ +N + + GN F+ I E L++ S
Sbjct: 554 IPAAMFK---QSGKIAANFIAGKRYVYIKNDGMK--KECHGAGNLLEFQGIRSEQLNRLS 608
Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI 245
+ ++ G N + + + N G IP E + L ILN+ N+I
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 246 SGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298
SG + L L+ N +G +P + L L IDLSNN LSG IP
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 63 HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSN 122
+ S+M LD+S N L G+IP +IG +P L N+ N SIP G++ L LDLS+
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 123 NQLTGEIPEHLA 134
N+L G IP+ ++
Sbjct: 690 NKLDGRIPQAMS 701
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 66 LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQL 125
L +L++ +N++ G IP ++GD L L ++S N D IP + + L +DLSNN L
Sbjct: 658 LFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 126 TGEIPE 131
+G IPE
Sbjct: 717 SGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 109/273 (39%), Gaps = 53/273 (19%)
Query: 224 PIPMEFCQLDSLQILNISD-NNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282
PIP L L L I NN+ G A L + H N G +P L Q+
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 283 LQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKF 342
L +D S N LSG +PP + SS + V G F +
Sbjct: 127 LVTLDFSYNALSGTLPPSI----------------SSLPNLV--GITFDGNR-------- 160
Query: 343 TTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFS 402
+ I +Y G + + +S N+L G+IPP NL + ++LS N L G F
Sbjct: 161 ISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFG 218
Query: 403 N-----------------------LKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHN 439
+ K++ LDL N++ G +P L +L L NV+ N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 440 NLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP 472
NL G+IP+ F+ S+Y N LCG PLP
Sbjct: 279 NLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 102/244 (41%), Gaps = 37/244 (15%)
Query: 160 NLTNLRRLQLDG--NHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILP 217
NL L L + G N I +++K + L LY++ N+SG IP +L + L +
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 218 ENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK--DQLVLAHNNFEGEVPI 275
N G +P L +L + N ISG S S SK + ++ N G++P
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 276 QLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKK 335
LN L +DLS N+L G D F +K
Sbjct: 193 TFANLN-LAFVDLSRNMLEG-----------------------------DASVLFGSDKN 222
Query: 336 IQETFKFTTKNIAYTYRGRVISY-LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT 394
Q+ ++A+ +S L+ LDL N++ G +P + L + +LN+S+NNL
Sbjct: 223 TQK-IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 395 GSIP 398
G IP
Sbjct: 282 GEIP 285
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 74 NNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHL 133
NNL G IP I L L Y I+ +IP + L++LD S N L+G +P +
Sbjct: 87 NNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 134 AMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFR-EILESLSKCSSL-EGLY 191
+ +L NL + DGN I +S S L +
Sbjct: 146 S-------------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 192 LSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHH 251
+S N L+GKIP NL+ L + L N EG + F + Q ++++ N+++
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 252 ASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298
LS + + L L +N G +P L QL L +++S N L G IP
Sbjct: 240 VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 92/240 (38%), Gaps = 31/240 (12%)
Query: 2 DVVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLEXXXXXXXXXXXXXXXXIH 61
++V P L ++ ++H N++G P++L + T L I
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSIS 146
Query: 62 CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121
+L+ + N + G IP G F IS N IP +F N+N L +DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 122 NNQLTGEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESL 181
N L G+ LF + N +++ L N L +
Sbjct: 206 RNMLEGD----------------------ASVLFGSD---KNTQKIHLAKNSLAFDLGKV 240
Query: 182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNIS 241
+L GL L +N + G +P+ L L L + + N+ G IP Q +LQ ++S
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP----QGGNLQRFDVS 296
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 39/272 (14%)
Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
NLTNL RL+L N +I +LS +SL+ L S N ++ P L NL+ L+ + + N
Sbjct: 127 NLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 220 HFEG-PIPMEFCQLDSLQILN--ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
+ + L+SL N ISD GI + LSL+ +QL
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---------T 234
Query: 277 LCQLNKLQLIDLSNNILSGHIP----PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
L L L +DL+NN +S P L L + I SP + T+ +
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL---N 291
Query: 333 EKKIQETFKFTT-KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
E ++++ + KN+ Y L L +N I I P + +LT++Q L YN
Sbjct: 292 ENQLEDISPISNLKNLTY------------LTLYFNN-ISDISP-VSSLTKLQRL-FFYN 336
Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL 423
N + S+ +NL +I L +N++ PL
Sbjct: 337 NKVSDV-SSLANLTNINWLSAGHNQISDLTPL 367
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 39/272 (14%)
Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
NLTNL RL+L N +I +LS +SL+ L S N ++ P L NL+ L+ + + N
Sbjct: 127 NLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 220 HFEG-PIPMEFCQLDSLQILN--ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
+ + L+SL N ISD GI + LSL+ +QL
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---------T 234
Query: 277 LCQLNKLQLIDLSNNILSGHIP----PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
L L L +DL+NN +S P L L + I SP + T+ +
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL---N 291
Query: 333 EKKIQETFKFTT-KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
E ++++ + KN+ Y L L +N I I P + +LT++Q L YN
Sbjct: 292 ENQLEDISPISNLKNLTY------------LTLYFNN-ISDISP-VSSLTKLQRL-FFYN 336
Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL 423
N + S+ +NL +I L +N++ PL
Sbjct: 337 NKVSDV-SSLANLTNINWLSAGHNQISDLTPL 367
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 39/272 (14%)
Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
NLTNL RL+L N +I +LS +SL+ L S N ++ P L NL+ L+ + + N
Sbjct: 127 NLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 220 HFEG-PIPMEFCQLDSLQILN--ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
+ + L+SL N ISD GI + LSL+ +QL
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---------T 234
Query: 277 LCQLNKLQLIDLSNNILSGHIP----PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
L L L +DL+NN +S P L L + I SP + T+ +
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL---N 291
Query: 333 EKKIQETFKFTT-KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
E ++++ + KN+ Y L L +N I I P + +LT++Q L S N
Sbjct: 292 ENQLEDISPISNLKNLTY------------LTLYFNN-ISDISP-VSSLTKLQRLFFSNN 337
Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL 423
+ S S+ +NL +I L +N++ PL
Sbjct: 338 KV--SDVSSLANLTNINWLSAGHNQISDLTPL 367
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
GR + +L +L+L N+L G P + IQ L L N + F L +K+L+L
Sbjct: 51 GR-LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 413 SYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIP-EWTAQFATFNESSYEGNPFLCGLP 470
N++ +P LN+L N+A N + W A++ + S G CG P
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW--LRKKSLNGGAARCGAP 166
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 358 YLSELDLSYNKLIGQIPPQ--IGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415
+ +EL L+ N+L G+I G L + L L N LTG P+ F HI+ L L N
Sbjct: 30 HTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 416 KLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
K+ + L+ L N+ N +S +P + + NPF C
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 132/304 (43%), Gaps = 41/304 (13%)
Query: 161 LTNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDNNLSGKI--PRWLGNLSMLQHIILP 217
L++L L+LD N F ++ + + ++LE L L+ NL G + + L+ L+ ++L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 218 ENHFEGPIPMEF-CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
+N+ + P F + +L+++ N + I + NF+G+
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL-------------NFQGK-HFT 183
Query: 277 LCQLNKLQLIDLSNNILSGHIPPC---LDNTTLHESYIDTSSPESSETSFVDEGFAFYKE 333
L +L+ + L D++ L C NT++ + +D S E S F
Sbjct: 184 LLRLSSITLQDMNEYWLGWE--KCGNPFKNTSI--TTLDLSGNGFKE-SMAKRFFDAIAG 238
Query: 334 KKIQETFKFTTKNIA-------------YTYRGRVISYLSELDLSYNKLIGQIPPQIGNL 380
KIQ + N+ +T++G S + DLS +K+ + +
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298
Query: 381 TRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE-LNTLAVFNVAHN 439
T ++ L L+ N + + F L H+ L+LS N L G I ++ E L+ L V ++++N
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYN 357
Query: 440 NLSG 443
++
Sbjct: 358 HIRA 361
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 356 ISYLSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSY 414
+++L +L+LS N +G I ++ NL +++ L+LSYN++ +F L ++K L L
Sbjct: 322 LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 415 NKL 417
N+L
Sbjct: 381 NQL 383
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 359 LSELDLSYNKLIGQ--IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416
L ELDLS++ + Q+ NL+ +Q+LNLSYN F ++ LDL++ +
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 417 L---DGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPF 465
L D + P Q L+ L V N++H+ L + + +GN F
Sbjct: 412 LKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 135/333 (40%), Gaps = 54/333 (16%)
Query: 163 NLRRLQLDGNHFREILESLSKC-SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF 221
++ + L ++F I + C S L+ L L+ +LS ++P L LS L+ ++L N F
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313
Query: 222 EGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNFEGE--VPIQLC 278
E + SL L+I N + +L +L L+H++ E +QL
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373
Query: 279 QLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQE 338
L+ LQ ++LS N P L E++ E + +D F K K Q
Sbjct: 374 NLSHLQSLNLSYNE-----PLSLKT----EAF-----KECPQLELLDLAFTRLKVKDAQS 419
Query: 339 TFK----FTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPP------------------- 375
F+ N+++ S LD+S +L +P
Sbjct: 420 PFQNLHLLKVLNLSH----------SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
Query: 376 -QIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVF 434
+ L R++ L LS+ +L+ F++LK + +DLS+N+L L L + +
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL- 528
Query: 435 NVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
N+A N++S +P + + NP C
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 382 RIQTLNLSYNNL-TGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNN 440
+IQ + + YNNL T + ++ K + L+ YN+L+GK+P E+ LA N+A+N
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYN- 363
Query: 441 LSGKIPEWTAQFATFNE 457
+I E A F F E
Sbjct: 364 ---QITEIPANFCGFTE 377
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNL-KHIKSLDLSYNKL 417
L L+ YN+L G++P G+ ++ +LNL+YN +T IP+ F + +++L ++NKL
Sbjct: 332 LGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 116/277 (41%), Gaps = 39/277 (14%)
Query: 161 LTNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDNNLSGKI--PRWLGNLSMLQHIILP 217
L++L L+LD N F ++ + + ++LE L L+ NL G + + L+ L+ ++L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 218 ENHFEGPIPMEF-CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
+N+ + P F + +L+++ N + I + NF+G+
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL-------------NFQGK-HFT 183
Query: 277 LCQLNKLQLIDLSNNILSGHIPPC---LDNTTLHESYIDTSSPESSETSFVDEGFAFYKE 333
L +L+ + L D++ L C NT++ + +D S E S F
Sbjct: 184 LLRLSSITLQDMNEYWLGWE--KCGNPFKNTSI--TTLDLSGNGFKE-SMAKRFFDAIAG 238
Query: 334 KKIQETFKFTTKNIA-------------YTYRGRVISYLSELDLSYNKLIGQIPPQIGNL 380
KIQ + N+ +T++G S + DLS +K+ + +
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298
Query: 381 TRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
T ++ L L+ N + + F L H+K L L N+L
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQL 335
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 118/272 (43%), Gaps = 40/272 (14%)
Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
NLTNL RL+L N +I +LS +SL+ L N ++ P L NL+ L+ + + N
Sbjct: 132 NLTNLNRLELSSNTISDI-SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSN 187
Query: 220 HFEG-PIPMEFCQLDSLQILN--ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
+ + L+SL N ISD GI + LSL+ +QL
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---------T 238
Query: 277 LCQLNKLQLIDLSNNILSGHIP----PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
L L L +DL+NN +S P L L + I SP + T+ +
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL---N 295
Query: 333 EKKIQETFKFTT-KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
E ++++ + KN+ Y L L +N I I P + +LT++Q L YN
Sbjct: 296 ENQLEDISPISNLKNLTY------------LTLYFNN-ISDISP-VSSLTKLQRL-FFYN 340
Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL 423
N + S+ +NL +I L +N++ PL
Sbjct: 341 NKVSDV-SSLANLTNINWLSAGHNQISDLTPL 371
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 118/272 (43%), Gaps = 40/272 (14%)
Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
NLTNL RL+L N +I +LS +SL+ L N ++ P L NL+ L+ + + N
Sbjct: 127 NLTNLNRLELSSNTISDI-SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSN 182
Query: 220 HFEG-PIPMEFCQLDSLQILN--ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
+ + L+SL N ISD GI + LSL+ +QL
Sbjct: 183 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---------T 233
Query: 277 LCQLNKLQLIDLSNNILSGHIP----PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
L L L +DL+NN +S P L L + I SP + T+ +
Sbjct: 234 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL---N 290
Query: 333 EKKIQETFKFTT-KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
E ++++ + KN+ Y L L +N I I P + +LT++Q L YN
Sbjct: 291 ENQLEDISPISNLKNLTY------------LTLYFNN-ISDISP-VSSLTKLQRL-FFYN 335
Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL 423
N + S+ +NL +I L +N++ PL
Sbjct: 336 NKVSDV-SSLANLTNINWLSAGHNQISDLTPL 366
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 118/272 (43%), Gaps = 40/272 (14%)
Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
NLTNL RL+L N +I +LS +SL+ L N ++ P L NL+ L+ + + N
Sbjct: 127 NLTNLNRLELSSNTISDI-SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSN 182
Query: 220 HFEG-PIPMEFCQLDSLQILN--ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
+ + L+SL N ISD GI + LSL+ +QL
Sbjct: 183 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---------T 233
Query: 277 LCQLNKLQLIDLSNNILSGHIP----PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
L L L +DL+NN +S P L L + I SP + T+ +
Sbjct: 234 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL---N 290
Query: 333 EKKIQETFKFTT-KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
E ++++ + KN+ Y L L +N I I P + +LT++Q L S N
Sbjct: 291 ENQLEDISPISNLKNLTY------------LTLYFNN-ISDISP-VSSLTKLQRLFFSNN 336
Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL 423
+ S S+ +NL +I L +N++ PL
Sbjct: 337 KV--SDVSSLANLTNINWLSAGHNQISDLTPL 366
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 31/230 (13%)
Query: 262 LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSG---HIPPCLDNTTLHESYIDTSSPES 318
L+L +N P L KL+ + LS N L +P L +HE+ I T +S
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI-TKVRKS 139
Query: 319 S-----------------ETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSE 361
++S ++ G AF KK+ + NI +G S L+E
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLS-YIRIADTNITTIPQGLPPS-LTE 196
Query: 362 LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI 421
L L NK+ + L + L LS+N+++ + +N H++ L L+ NKL K+
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255
Query: 422 PLQLVELNTLAVFNVAHNNLSG------KIPEWTAQFATFNESSYEGNPF 465
P L + + V + +NN+S P + + A+++ S NP
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 31/230 (13%)
Query: 262 LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSG---HIPPCLDNTTLHESYIDTSSPES 318
L+L +N P L KL+ + LS N L +P L +HE+ I T +S
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI-TKVRKS 139
Query: 319 S-----------------ETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSE 361
++S ++ G AF KK+ + NI +G S L+E
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLS-YIRIADTNITTIPQGLPPS-LTE 196
Query: 362 LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI 421
L L NK+ + L + L LS+N+++ + +N H++ L L+ NKL K+
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255
Query: 422 PLQLVELNTLAVFNVAHNNLSG------KIPEWTAQFATFNESSYEGNPF 465
P L + + V + +NN+S P + + A+++ S NP
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
++ L LDGN F + + LS L + LS+N +S + N++ L +IL N
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 223 GPIPMEFCQLDSLQILNISDNNIS----GIYHHASILS 256
P F L SL++L++ N+IS G ++ S LS
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 373 IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLA 432
+P ++ N + ++LS N ++ +FSN+ + +L LSYN+L P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 433 VFNVAHNNLSGKIPEWT-AQFATFNESSYEGNPFLC 467
+ ++ N++S +PE + + + NP C
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
+L+ +DLS N++ N+T++ TL LSYN L P TF LK ++ L L N +
Sbjct: 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 142/376 (37%), Gaps = 53/376 (14%)
Query: 90 SLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAM----GCVDXXXXXX 145
SL+ ++S N P F + L +L L+N QL + E L +
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLAN 231
Query: 146 XXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRW 204
TNL +L L N+ ++ S S SL L L NN+ PR
Sbjct: 232 NQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS 291
Query: 205 LGNLSMLQHIILPENHFEGPIPM---------EFCQLDSLQILNISDNNISGIYHHASIL 255
LS L+++ L + + + F L L+ LN+ DNNI
Sbjct: 292 FYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPST------- 344
Query: 256 SLSKDQLVLAHNNFEGEVPIQLCQLNK----LQLIDLSNNILSGHIPPCLDNTTLHESYI 311
N F G V ++ L+K LQ + + H P N T
Sbjct: 345 ---------KSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLT------ 389
Query: 312 DTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIG 371
++ + + F++ + +I + + R + + E+ LSYNK +
Sbjct: 390 -----KNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYL- 443
Query: 372 QIPPQ----IGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE 427
Q+ + +L R+ ++ N+ S PS F L+++ LDLS N + I L+E
Sbjct: 444 QLSTSSFALVPSLQRLMLRRVALKNVDIS-PSPFRPLRNLTILDLSNNNI-ANINEDLLE 501
Query: 428 -LNTLAVFNVAHNNLS 442
L L + + HNNL+
Sbjct: 502 GLENLEILDFQHNNLA 517
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 118/272 (43%), Gaps = 40/272 (14%)
Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
NLTNL RL+L N +I +LS +SL+ L N ++ P L NL+ L+ + + N
Sbjct: 131 NLTNLNRLELSSNTISDI-SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSN 186
Query: 220 HFEG-PIPMEFCQLDSLQILN--ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
+ + L+SL N ISD GI + LSL+ +QL
Sbjct: 187 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---------T 237
Query: 277 LCQLNKLQLIDLSNNILSGHIP----PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332
L L L +DL+NN +S P L L + I SP + T+ +
Sbjct: 238 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL---N 294
Query: 333 EKKIQETFKFTT-KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391
E ++++ + KN+ Y L L +N I I P + +LT++Q L + N
Sbjct: 295 ENQLEDISPISNLKNLTY------------LTLYFNN-ISDISP-VSSLTKLQRLFFANN 340
Query: 392 NLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL 423
+ S S+ +NL +I L +N++ PL
Sbjct: 341 KV--SDVSSLANLTNINWLSAGHNQISDLTPL 370
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 363 DLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIP 422
D S+ KL Q+P + T I LNL++N L + F+ + SLD+ +N + P
Sbjct: 15 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 71
Query: 423 LQLVELNTLAVFNVAHNNLSGKIPEWTAQFAT 454
+L L V N+ HN LS ++ + T F T
Sbjct: 72 ELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 102
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 354 RVISYLSELDLSYNK---LIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
R + + E+ LSYNK L + +L R+ ++ N+ S PS F L+++ L
Sbjct: 432 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTIL 490
Query: 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
DLS N + L L L + ++ HNNL+
Sbjct: 491 DLSNNNIANINDDMLEGLEKLEILDLQHNNLA 522
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416
S L+ LD+ +N + P L ++ LNL +N L+ TF+ ++ L L N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 417 LDGKIPLQLVELNTLAVFNVAHNNLSG 443
+ V+ L +++HN LS
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 363 DLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIP 422
D S+ KL Q+P + T I LNL++N L + F+ + SLD+ +N + P
Sbjct: 20 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 76
Query: 423 LQLVELNTLAVFNVAHNNLSGKIPEWTAQFAT 454
+L L V N+ HN LS ++ + T F T
Sbjct: 77 ELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 107
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 354 RVISYLSELDLSYNK---LIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
R + + E+ LSYNK L + +L R+ ++ N+ S PS F L+++ L
Sbjct: 437 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTIL 495
Query: 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
DLS N + L L L + ++ HNNL+
Sbjct: 496 DLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416
S L+ LD+ +N + P L ++ LNL +N L+ TF+ ++ L L N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 417 LDGKIPLQLVELNTLAVFNVAHNNLSG 443
+ V+ L +++HN LS
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 359 LSELDLSYNKLIGQIPPQIGNLTR-IQTLNLSYNNLTGSIPSTFSNLK-HIKSLDLSYNK 416
L +LD+S N + + T+ + +LN+S N LT +I F L IK LDL NK
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNK 432
Query: 417 LDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470
+ IP Q+V+L L NVA N L + + + NP+ C P
Sbjct: 433 IKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT--GSIPSTFSNLKHIKSLDLS 413
IS LD S N L + G+LT ++TL L N L I + +K ++ LD+S
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382
Query: 414 YNKL 417
N +
Sbjct: 383 QNSV 386
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 363 DLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIP 422
D S+ KL Q+P + T I LNL++N L + F+ + SLD+ +N + P
Sbjct: 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 423 LQLVELNTLAVFNVAHNNLSGKIPEWTAQFAT 454
+L L V N+ HN LS ++ + T F T
Sbjct: 67 ELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 97
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 354 RVISYLSELDLSYNK---LIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSL 410
R + + E+ LSYNK L + +L R+ ++ N+ S PS F L+++ L
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTIL 485
Query: 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
DLS N + L L L + ++ HNNL+
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416
S L+ LD+ +N + P L ++ LNL +N L+ TF+ ++ L L N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 417 LDGKIPLQLVELNTLAVFNVAHNNLSG 443
+ V+ L +++HN LS
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 359 LSELDLSYNKLIGQ--IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416
L LDLS+N + Q+ NL+ +QTLNLS+N G F ++ LDL++ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 417 LDGKIPLQLVE-LNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPF 465
L P + L+ L V N+ + L A + +GN F
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 376 QIGNLTRIQTLNLSYNNLTGSIPST--FSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAV 433
++GNL QTL+LS+N++ S + NL H+++L+LS+N+ G E L +
Sbjct: 345 KLGNL---QTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLEL 401
Query: 434 FNVAHNNLSGKIPE 447
++A L P+
Sbjct: 402 LDLAFTRLHINAPQ 415
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 359 LSELDLSYNKLIGQ--IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416
L +LDLS++ + Q+ NL +Q LNLSYN G F ++ LD+++
Sbjct: 351 LQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTH 410
Query: 417 LDGKIPLQLVE-LNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCG 468
L K P + L+ L V N++H L A + +GN F G
Sbjct: 411 LHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 123/286 (43%), Gaps = 31/286 (10%)
Query: 161 LTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKI-PRWLGNLSMLQHIILPE 218
+ +L++L L+ N F ++ + + + SL LY+ N + R L L LQ + L
Sbjct: 299 MNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSH 358
Query: 219 NHFEGP--IPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276
+ E ++ L LQ LN+S N G+ A + L +A + + P
Sbjct: 359 SDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
Query: 277 LCQ-LNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKK 335
Q L+ L++++LS+ CL +DTS+ + G +
Sbjct: 419 PFQNLHLLRVLNLSH---------CL---------LDTSNQH------LLAGLQDLRHLN 454
Query: 336 IQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG 395
+Q F +I+ T +++ L L LS L+ L + L+LS+N+LTG
Sbjct: 455 LQGN-SFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
Query: 396 SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNL 441
S+LK + L+++ N + P L L+ ++ N++HN L
Sbjct: 514 DSMDALSHLKGLY-LNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 136/330 (41%), Gaps = 50/330 (15%)
Query: 164 LRRLQLDGNHFREILESLSKC-SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
+ + L + F ++ S +C + ++ L L+ +L+G +P + ++ L+ ++L N F+
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFD 313
Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLV------LAHNNFEGE--VP 274
+ CQ+++ ++ D I G + + ++L L+H++ E
Sbjct: 314 -----QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCN 368
Query: 275 IQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEK 334
+QL L LQ ++LS N P L+ D + E + +D F K
Sbjct: 369 LQLKNLRHLQYLNLSYNE-----PLGLE---------DQAFKECPQLELLDVAFTHLHVK 414
Query: 335 KIQETFK----FTTKNIAY----TYRGRVISYLSELDLSYNKLIGQIPPQIGNLTR---- 382
F+ N+++ T +++ L DL + L G Q G++++
Sbjct: 415 APHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQ--DLRHLNLQGN-SFQDGSISKTNLL 471
Query: 383 -----IQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA 437
++ L LS NL F L+++ LDLS+N L G L L L + N+A
Sbjct: 472 QMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYL-NMA 530
Query: 438 HNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
NN+ P + + + NP C
Sbjct: 531 SNNIRIIPPHLLPALSQQSIINLSHNPLDC 560
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
L+EL L N+L +PP++ +LT++ L+L YN L F L +K L L N+L
Sbjct: 111 LAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 418 DGKIPL----QLVELNTLAVFNVAHNNLSGKIPE 447
++P +L EL TL + NN ++PE
Sbjct: 170 K-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 36/135 (26%)
Query: 88 LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDXXXXXXXX 147
L +L+ FNIS N F +FL L L+ N LT E+P +
Sbjct: 231 LSNLQIFNISANIF---------KYDFLTRLYLNGNSLT-ELPAEIK------------- 267
Query: 148 XXXXGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGN 207
NL+NLR L L N + L C L+ Y DN ++ +P GN
Sbjct: 268 ------------NLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN 314
Query: 208 LSMLQHIILPENHFE 222
L LQ + + N E
Sbjct: 315 LCNLQFLGVEGNPLE 329
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
+L+ L L+ N L ++P +I NL+ ++ L+LS+N LT S+P+ + +K ++ +
Sbjct: 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF-FDNM 304
Query: 418 DGKIPLQLVELNTLAVFNVAHNNLSGKI 445
+P + L L V N L +
Sbjct: 305 VTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 359 LSELDLSYNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
L EL L N+L G +P + +LT++ L+L N LT + F L H+K L + NKL
Sbjct: 66 LKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 418 DGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT-AQFATFNESSYEGNPFLC 467
++P + L L + N L IP + ++ + GNP+ C
Sbjct: 125 T-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDC 173
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
L+ LDLS +L L R+Q LN+S+NNL S ++ L + +LD S+N+++
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Query: 419 GKIPLQLVELNTLAVFNVAHNNLSG-----KIPEWTAQFATF 455
+ +LA FN+ +N+++ K +W + F
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQF 576
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 377 IGNLTRIQTLNLSYNNL-TGSIPSTFSNLKHIKSLDLSYN 415
IG L ++ LN+++N + + +P+ FSNL ++ +DLSYN
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
L+ LDLS +L L R+Q LN+S+NNL S ++ L + +LD S+N+++
Sbjct: 470 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Query: 419 GKIPLQLVELNTLAVFNVAHNNLSG-----KIPEWTAQFATF 455
+ +LA FN+ +N+++ K +W + F
Sbjct: 530 TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQF 571
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 377 IGNLTRIQTLNLSYNNL-TGSIPSTFSNLKHIKSLDLSYN 415
IG L ++ LN+++N + + +P+ FSNL ++ +DLSYN
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 98/259 (37%), Gaps = 29/259 (11%)
Query: 160 NLTNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE 218
NL NLR L L N + I L + S+L L +S+N + + +L L+ + + +
Sbjct: 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137
Query: 219 NHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLC 278
N F L+SL+ L + N++ I A L L H N
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197
Query: 279 QLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQE 338
+L +L+++++S H Y+DT +P Y
Sbjct: 198 RLYRLKVLEIS-----------------HWPYLDTMTPN-----------CLYGLNLTSL 229
Query: 339 TFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP 398
+ R + YL L+LSYN + + L R+Q + L L P
Sbjct: 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289
Query: 399 STFSNLKHIKSLDLSYNKL 417
F L +++ L++S N+L
Sbjct: 290 YAFRGLNYLRVLNVSGNQL 308
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 118/296 (39%), Gaps = 33/296 (11%)
Query: 162 TNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
T R L L N + + + + LE L L++N +S P NL L+ + L N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 221 FEGPIPME-FCQLDSLQILNISDNNI--------SGIYHHASILSLSKDQLVLAHNNFEG 271
+ IP+ F L +L L+IS+N I +Y+ S+ D + ++H F G
Sbjct: 92 LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 272 EVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFY 331
++ L K L + LS H+ + L +++ + + D F
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALS-HLHGLI---VLRLRHLNIN-------AIRDYSFKRL 199
Query: 332 KEKKIQETFKF-----TTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTL 386
K+ E + T N Y L+ L +++ L + +L ++ L
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLN------LTSLSITHCNLTAVPYLAVRHLVYLRFL 253
Query: 387 NLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
NLSYN ++ S L ++ + L +L P LN L V NV+ N L+
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 362 LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGS-IPSTFSNLKHIKSLDLSYNKLDGK 420
LD+S+ L+ ++ L ++ N+ + +P F+ L+++ LDLS +L+
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 421 IPLQLVELNTLAVFNVAHNNL 441
P L++L V N++HNN
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNF 211
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 155 FPRNFNLTNLRRLQLDGNHFREILESL-SKCSSLEGLYLSDNNLSGK-IPRWLGNLSMLQ 212
F +L NL L + H R + + SSLE L ++ N+ +P L L
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178
Query: 213 HIILPENHFEGPIPMEFCQLDSLQILNISDNNI 245
+ L + E P F L SLQ+LN+S NN
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
L+ LDLS +L P +L+ +Q LN+S+NN + L ++ LD S N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 419 GKIPLQLVEL-NTLAVFNVAHNNLS 442
+L ++LA N+ N+ +
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 161 LTNLRRLQLDGNHFRE--ILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE 218
L++L L++ GN F+E + + ++ +L L LS L P +LS LQ + +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 219 NHFEGPIPMEFCQLDSLQILNISDNNI 245
N+F + L+SLQ+L+ S N+I
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 362 LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGS-IPSTFSNLKHIKSLDLSYNKLDGK 420
LD+S+ L+ ++ L ++ N+ + +P F+ L+++ LDLS +L+
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 421 IPLQLVELNTLAVFNVAHNNL 441
P L++L V N++HNN
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNF 530
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 70/184 (38%), Gaps = 28/184 (15%)
Query: 65 SLMLLDVSNNNLQGHIPVKIGDF-LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123
SL LD+S N L DF SLKY ++S N + +S+N
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV----------------ITMSSN 415
Query: 124 QLTGEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESL-S 182
L E EHL + F +L NL L + H R + +
Sbjct: 416 FLGLEQLEHLDFQHSNLKQMSE---------FSVFLSLRNLIYLDISHTHTRVAFNGIFN 466
Query: 183 KCSSLEGLYLSDNNLSGK-IPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNIS 241
SSLE L ++ N+ +P L L + L + E P F L SLQ+LN+S
Sbjct: 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Query: 242 DNNI 245
NN
Sbjct: 527 HNNF 530
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 377 IGNLTRIQTLNLSYNNLTG-SIPSTFSNLKHIKSLDLSYNKL 417
IG+L ++ LN+++N + +P FSNL +++ LDLS NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
L+ LDLS +L P +L+ +Q LN+S+NN + L ++ LD S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 419 GKIPLQLVEL-NTLAVFNVAHNNLS 442
+L ++LA N+ N+ +
Sbjct: 556 TSKKQELQHFPSSLAFLNLTQNDFA 580
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 25/217 (11%)
Query: 236 QILNISDNNISGI-------YHHASILSLSKDQL-VLAHNNFEGEVPIQLCQLNKLQLID 287
++LN+ +N I I H IL LS++ + + F G L LN L+L D
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG-----LANLNTLELFD 121
Query: 288 LSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNI 347
N + + + + L E ++ + ES + +AF + ++ K +
Sbjct: 122 --NRLTTIPNGAFVYLSKLKELWLRNNPIESIPS------YAFNRIPSLRRLDLGELKRL 173
Query: 348 AYTYRGRV--ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLK 405
+Y G +S L L+L+ L + P + L ++ L+LS N+L+ P +F L
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231
Query: 406 HIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442
H++ L + +++ L +L N+AHNNL+
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 380 LTRIQTLNLSYNNLTGS-IPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAH 438
L+ ++ L ++ N+ + +P F+ L+++ LDLS +L+ P L++L V N+A
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 439 NNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470
N L + + + NP+ C P
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 71/187 (37%), Gaps = 28/187 (14%)
Query: 65 SLMLLDVSNNNLQGHIPVKIGDF-LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123
SL LD+S N L DF SLKY ++S N + +S+N
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV----------------ITMSSN 391
Query: 124 QLTGEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESL-S 182
L E EHL + F +L NL L + H R + +
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSE---------FSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 183 KCSSLEGLYLSDNNLSGK-IPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNIS 241
SSLE L ++ N+ +P L L + L + E P F L SLQ+LN++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 242 DNNISGI 248
N + +
Sbjct: 503 SNQLKSV 509
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 377 IGNLTRIQTLNLSYNNLTG-SIPSTFSNLKHIKSLDLSYNKL 417
IG+L ++ LN+++N + +P FSNL +++ LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 362 LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGS-IPSTFSNLKHIKSLDLSYNKLDGK 420
LD+S+ L+ ++ L ++ N+ + +P F+ L+++ LDLS +L+
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 421 IPLQLVELNTLAVFNVAHNNL 441
P L++L V N++HNN
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNF 506
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 6/185 (3%)
Query: 65 SLMLLDVSNNNLQGHIPVKIGDF-LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123
SL LD+S N L DF SLKY ++S N ++ ++F + L LD ++
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHS 406
Query: 124 QLTGEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFN-LTNLRRLQLDGNHFRE--ILES 180
L ++ E + F FN L++L L++ GN F+E + +
Sbjct: 407 NLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 181 LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNI 240
++ +L L LS L P +LS LQ + + N+F + L+SLQ+L+
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525
Query: 241 SDNNI 245
S N+I
Sbjct: 526 SLNHI 530
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 377 IGNLTRIQTLNLSYNNLTG-SIPSTFSNLKHIKSLDLSYNKLDG 419
IG+L ++ LN+++N + +P FSNL +++ LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
L+ LDLS +L P +L+ +Q LN+S+NN + L ++ LD S N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 419 GKIPLQLVEL-NTLAVFNVAHNNLS 442
+L ++LA N+ N+ +
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFA 556
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 356 ISYLSELDLSYNKLIGQIPPQIGNLTR-IQTLNLSYNNLTGSIPSTFSNL-KHIKSLDLS 413
+S L LD+S N L + I LNLS N LTGS+ F L +K LDL
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLH 458
Query: 414 YNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470
N++ IP + L L NVA N L + + NP+ C P
Sbjct: 459 NNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 27/158 (17%)
Query: 66 LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQL 125
L L ++ N LQ +P + D L +LK + N S F + L L L +NQL
Sbjct: 87 LTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 126 TGEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESL-SKC 184
+ L G D LTNL RL LD N + + E + K
Sbjct: 146 -----QSLPKGVFD--------------------KLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 185 SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
+ L+ L L+DN L L+ L HI L N ++
Sbjct: 181 TQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWD 218
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 34/164 (20%)
Query: 97 SMNAFDSSIPTSFG--NMNFLISLDLSNNQLTGEIPEHLAMGCVDXXXXXXXXXXXXGHL 154
+++AF++ + T G +N LI L+L +NQ+T P
Sbjct: 51 TLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLTPLK---------------------- 88
Query: 155 FPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHI 214
NLT + L+L GN + + +++ S++ L L+ ++ P L LS LQ +
Sbjct: 89 -----NLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVL 140
Query: 215 ILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLS 258
L N P+ L +LQ L+I +N ++ + A++ L+
Sbjct: 141 YLDLNQITNISPL--AGLTNLQYLSIGNNQVNDLTPLANLSKLT 182
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 350 TYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKS 409
T+ G S + LDLS+ + L ++ LNL+YN + F L +++
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318
Query: 410 LDLSYNKL 417
L+LSYN L
Sbjct: 319 LNLSYNLL 326
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 131/289 (45%), Gaps = 26/289 (8%)
Query: 161 LTNLRRLQLDGNHFREIL-ESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
L +L+ L L N +I E+ +L+ L LS N L L + +I L +N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASI--LSLSKDQLV-LAHNNFEGEVPIQ 276
H F L+ LQ L++ DN ++ I+ SI + LS ++LV L N + I
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL-IH 407
Query: 277 LCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKI 336
L + N+L+ +D+ +L P L L+++ + S + + + F E +
Sbjct: 408 LSE-NRLENLDILYFLLR---VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463
Query: 337 QETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT-- 394
Q + T+ + G +S+L L L++N L P +LT ++ L+L+ N LT
Sbjct: 464 Q--LAWETELCWDVFEG--LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519
Query: 395 --GSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNL 441
+P+ +++ LD+S N+L P V +L+V ++ HN
Sbjct: 520 SHNDLPA------NLEILDISRNQLLAPNPDVFV---SLSVLDITHNKF 559
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 324 VDEGFAFYKEKKIQETFK-FTTKNIAYTYRGRV-------ISYLSELDLSYNKLIGQIPP 375
+ GF F ++ ET K N+AY ++ + L L+LSYN L
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332
Query: 376 QIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
L ++ ++L N++ TF L+ +++LDL N L
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 30/133 (22%)
Query: 64 KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123
K L+L++ N LQ +P + D L +L Y N++ N S F + L LDLS N
Sbjct: 112 KELVLVE---NQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 124 QLTGEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESL-S 182
QL + L G D LT L+ L+L N + + + +
Sbjct: 168 QL-----QSLPEGVFD--------------------KLTQLKDLRLYQNQLKSVPDGVFD 202
Query: 183 KCSSLEGLYLSDN 195
+ +SL+ ++L DN
Sbjct: 203 RLTSLQYIWLHDN 215
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
L N+R L L GN +I +L + ++L L L+ N L L+ L+ ++L EN
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 221 FEGPIPMEFCQLDSLQILNISDNNI----SGIYHHASILSLSKDQLVLAHNNFEG---EV 273
+ F +L +L LN++ N + G++ + L+ +L L++N + V
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT----ELDLSYNQLQSLPEGV 176
Query: 274 PIQLCQLNKLQL 285
+L QL L+L
Sbjct: 177 FDKLTQLKDLRL 188
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415
++ L EL L N+L LT + LNL++N L F L ++ LDLSYN
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 416 KL 417
+L
Sbjct: 168 QL 169
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415
++ L+ L+L++N+L LT + L+LSYN L F L +K L L N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 416 KL 417
+L
Sbjct: 192 QL 193
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 10/140 (7%)
Query: 88 LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDXXXXXXXX 147
L L + N+ N + F ++ L +L L+NNQL L +G D
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-----SLPLGVFDHLTQLDKL 112
Query: 148 XXXXGHL--FPRNF--NLTNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDNNLSGKIP 202
L P LT L+ L+L+ N + I + K ++L+ L LS N L
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 203 RWLGNLSMLQHIILPENHFE 222
L LQ I L N F+
Sbjct: 173 GAFDRLGKLQTITLFGNQFD 192
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415
++ L EL L+ N+L LT +QTL+LS N L F L ++++ L N
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 416 KLD 418
+ D
Sbjct: 190 QFD 192
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 350 TYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP-STFSNLKHIK 408
T+RG ++ L+ L+L YN+L +LT + TL L+ N L S+P F +L +
Sbjct: 54 TFRG--LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLD 110
Query: 409 SLDLSYNKL 417
L L N+L
Sbjct: 111 KLYLGGNQL 119
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 10/140 (7%)
Query: 88 LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDXXXXXXXX 147
L L + N+ N + F ++ L +L L+NNQL L +G D
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-----SLPLGVFDHLTQLDKL 112
Query: 148 XXXXGHL--FPRNF--NLTNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDNNLSGKIP 202
L P LT L+ L+L+ N + I + K ++L+ L LS N L
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 203 RWLGNLSMLQHIILPENHFE 222
L LQ I L N F+
Sbjct: 173 GAFDRLGKLQTITLFGNQFD 192
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415
++ L EL L+ N+L LT +QTL+LS N L F L ++++ L N
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 416 KLD 418
+ D
Sbjct: 190 QFD 192
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 350 TYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP-STFSNLKHIK 408
T+RG ++ L+ L+L YN+L +LT + TL L+ N L S+P F +L +
Sbjct: 54 TFRG--LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLD 110
Query: 409 SLDLSYNKL 417
L L N+L
Sbjct: 111 KLYLGGNQL 119
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 38/204 (18%)
Query: 97 SMNAFDSSIPTSFGN--MNFLISLDLSNNQLTGEIPEHLAMGCVDXXXXXXXXXXXXGHL 154
+++AF + + T G +N LI L+L +NQ+T P
Sbjct: 45 TLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLK---------------------- 82
Query: 155 FPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHI 214
NLT + L+L GN + + +++ S++ L L+ ++ P L LS LQ +
Sbjct: 83 -----NLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVL 134
Query: 215 ILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVP 274
L N P+ L +LQ L+I + +S + A +LSK + A +N ++
Sbjct: 135 YLDLNQITNISPL--AGLTNLQYLSIGNAQVSDLTPLA---NLSKLTTLKADDNKISDIS 189
Query: 275 IQLCQLNKLQLIDLSNNILSGHIP 298
L L L + L NN +S P
Sbjct: 190 -PLASLPNLIEVHLKNNQISDVSP 212
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
L L L L N +I LS+ + L+ L L DN +S +P L L+ LQ++ L +NH
Sbjct: 128 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNH 184
Query: 221 FEGPIPMEFCQLDSLQILNI 240
C L +L +L +
Sbjct: 185 ISD--LRALCGLKNLDVLEL 202
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 70 DVSNNNLQGHIPVKIGDFLPSLKYFNISM-NAFDSSIPTSFGNMNFLISLDLSNNQL 125
DV+ N+++GH P+ + L+ + + N D + FG F IS+D N L
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
L L L L N +I LS+ + L+ L L DN +S +P L L+ LQ++ L +NH
Sbjct: 133 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189
Query: 221 F 221
Sbjct: 190 I 190
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 160 NLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219
+LT L+ L + N +I L+ S L L+L++N L + +G L+ L + L +N
Sbjct: 263 DLTKLKXLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
Query: 220 HFEGPIPM 227
H P+
Sbjct: 322 HITDIRPL 329
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 156 PRNFN-LTNLRRLQLDGNHFREILESLSK-CSSLEGLYLSDNNLSGKIPRWLGNLSMLQH 213
P F L +L L LD +E+ L + ++L+ LYL DNNL +L L H
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 214 IILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHA 252
+ L N F L SL L + N+++ ++ HA
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHA 195
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 377 IGNLTRIQTLNLSYNNLTG-SIPSTFSNLKHIKSLDLSYNKLDG 419
IG+L ++ LN+++N + +P FSNL +++ LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 88 LPSLKYFNISMNAFDS-SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDXXXXXXX 146
L +LK N++ N S +P F N+ L LDLS+N++ ++ C D
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-------SIYCTDLRVLHQM 175
Query: 147 ---------XXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESL-SKCSSLEGLYLSDNN 196
+ P F L+ L LD N + + + + + +SL+ ++L N
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235
Query: 197 LSGKIPR 203
PR
Sbjct: 236 WDCSCPR 242
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
L L L L N +I LS+ + L+ L L DN +S +P L L+ LQ++ L +NH
Sbjct: 153 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 209
Query: 221 F 221
Sbjct: 210 I 210
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 377 IGNLTRIQTLNLSYNNLTG-SIPSTFSNLKHIKSLDLSYNKLDG 419
IG+L ++ LN+++N + +P FSNL +++ LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 88 LPSLKYFNISMNAFDS-SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDXXXXXXX 146
L +LK N++ N S +P F N+ L LDLS+N++ ++ C D
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-------SIYCTDLRVLHQM 176
Query: 147 ---------XXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESL-SKCSSLEGLYLSDNN 196
+ P F L+ L LD N + + + + + +SL+ ++L N
Sbjct: 177 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 236
Query: 197 LSGKIPR 203
PR
Sbjct: 237 WDCSCPR 243
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 326 EGFAFYKEKKIQETFKFTTKNIAYTYR--GRVISY-------LSELDLSYNKLIGQIPPQ 376
E FYK I + F+TKN+ ++ + SY L LDLS ++
Sbjct: 16 EELNFYK---IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 72
Query: 377 IGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV 436
+L+ + TL L+ N + FS L ++ L L + L TL NV
Sbjct: 73 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 132
Query: 437 AHNNL-SGKIPEW 448
AHN + S K+PE+
Sbjct: 133 AHNLIQSFKLPEY 145
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 377 IGNLTRIQTLNLSYNNLTG-SIPSTFSNLKHIKSLDLSYNKLDG 419
IG+L ++ LN+++N + +P FSNL +++ LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 88 LPSLKYFNISMNAFDS-SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDXXXXXXX 146
L +LK N++ N S +P F N+ L LDLS+N++ ++ C D
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-------SIYCTDLRVLHQM 177
Query: 147 ---------XXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESL-SKCSSLEGLYLSDNN 196
+ P F L+ L LD N + + + + + +SL+ ++L N
Sbjct: 178 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 237
Query: 197 LSGKIPR 203
PR
Sbjct: 238 WDCSCPR 244
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 377 IGNLTRIQTLNLSYNNLTG-SIPSTFSNLKHIKSLDLSYNKLDG 419
IG+L ++ LN+++N + +P FSNL +++ LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 88 LPSLKYFNISMNAFDS-SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDXXXXXXX 146
L +LK N++ N S +P F N+ L LDLS+N++ ++ C D
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-------SIYCTDLRVLHQM 177
Query: 147 ---------XXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESL-SKCSSLEGLYLSDNN 196
+ P F L+ L LD N + + + + + +SL+ ++L N
Sbjct: 178 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 237
Query: 197 LSGKIPR 203
PR
Sbjct: 238 WDCSCPR 244
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 377 IGNLTRIQTLNLSYNNLTG-SIPSTFSNLKHIKSLDLSYNKLDG 419
IG+L ++ LN+++N + +P FSNL +++ LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 88 LPSLKYFNISMNAFDS-SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDXXXXXXX 146
L +LK N++ N S +P F N+ L LDLS+N++ ++ C D
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-------SIYCTDLRVLHQM 176
Query: 147 ---------XXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESL-SKCSSLEGLYLSDNN 196
+ P F L+ L LD N + + + + + +SL+ ++L N
Sbjct: 177 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 236
Query: 197 LSGKIPR 203
PR
Sbjct: 237 WDCSCPR 243
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
L L L L N +I LS+ + L+ L L DN +S +P L L+ LQ++ L +NH
Sbjct: 130 LPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186
Query: 221 F 221
Sbjct: 187 I 187
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
L L L L N +I LS+ + L+ L L DN +S +P L L+ LQ++ L +NH
Sbjct: 131 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 187
Query: 221 F 221
Sbjct: 188 I 188
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
L L L L N +I LS+ + L+ L L DN +S +P L L+ LQ++ L +NH
Sbjct: 133 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189
Query: 221 F 221
Sbjct: 190 I 190
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
L L L L N +I LS+ + L+ L L DN +S +P L L+ LQ++ L +NH
Sbjct: 128 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 184
Query: 221 F 221
Sbjct: 185 I 185
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 104/267 (38%), Gaps = 34/267 (12%)
Query: 164 LRRLQLDGNHFREILES-LSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222
++ L L N I S L +C +L+ L L+ N ++ +L L+H+ L N+
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 223 GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ---LCQ 279
F L SL LN+ N + + L+K Q +L N + IQ
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ-ILRVGNMDTFTKIQRKDFAG 172
Query: 280 LNKLQLIDLSNNILSGHIPPCLDNTT--------------LHESYID-TSSPESSETSFV 324
L L+ +++ + L + P L + L E ++D TSS E E
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232
Query: 325 DEGFAFYKEKKIQET----FKFTTKNIAYTYRGRV--------ISYLSELDLSYNKLIGQ 372
D + E ET KFT +N+ T IS L EL+ S N+L
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KS 291
Query: 373 IPPQI-GNLTRIQTLNLSYNNLTGSIP 398
+P I LT +Q + L N S P
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNPWDCSCP 318
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418
+ LDLS N++ + +Q L L+ N + +FS+L ++ LDLSYN L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 419 GKIPLQLVELNTLAVFNVAHN 439
L++L N+ N
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGN 134
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
L L L L N +I LS+ + L+ L L DN +S +P L L+ LQ++ L +NH
Sbjct: 151 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 207
Query: 221 F 221
Sbjct: 208 I 208
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
L L L L N +I LS+ + L+ L L DN +S +P L L+ LQ++ L +NH
Sbjct: 151 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 207
Query: 221 F 221
Sbjct: 208 I 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
L L L L N +I LS+ + L+ L L DN +S +P L L+ LQ++ L +NH
Sbjct: 151 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 207
Query: 221 F 221
Sbjct: 208 I 208
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Query: 156 PRNFN-LTNLRRLQLDGNHFREILESLSK-CSSLEGLYLSDNNLSGKIPRWLGNLSMLQH 213
P F+ L L L LD +E+ L + ++L+ LYL DN L +L L H
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 214 IILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV 273
+ L N F L SL L + N ++ ++ HA L L NN
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 274 PIQLCQLNKLQLIDLSNN 291
L L LQ + L++N
Sbjct: 218 TEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Query: 156 PRNFN-LTNLRRLQLDGNHFREILESLSK-CSSLEGLYLSDNNLSGKIPRWLGNLSMLQH 213
P F+ L L L LD +E+ L + ++L+ LYL DN L +L L H
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 214 IILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV 273
+ L N F L SL L + N ++ ++ HA L L NN
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 274 PIQLCQLNKLQLIDLSNN 291
L L LQ + L++N
Sbjct: 217 TEALAPLRALQYLRLNDN 234
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 35/176 (19%)
Query: 80 IPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIP--EHLAMGC 137
IP ++L L+ + N +S +F + L+ LDL GE+ E+++ G
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL------GELKKLEYISEGA 191
Query: 138 VDXXXXXXXXXXXXGHL--FPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSD 194
+ ++ P L L L++ GNHF EI S SSL+ L++ +
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 195 NNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYH 250
+ +S ++ N F+G L SL LN++ NN+S + H
Sbjct: 252 SQVS----------------LIERNAFDG--------LASLVELNLAHNNLSSLPH 283
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG-PIPMEFCQLDSLQILNI 240
SLE L LSDN+LS W G LS L+++ L N ++ + F L +LQ L I
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
L EL+LS N+L P LT ++ L L + + + F +LK ++ L+LS+N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 26/186 (13%)
Query: 65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
SL L++ +N L +P + ++L L+ + N +S +F + L LDL +
Sbjct: 84 SLNTLELFDNRLTT-VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 125 LTGEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESLSKC 184
I E G L NLR L L + ++I +L+
Sbjct: 143 RLEYISEAAFEG------------------------LVNLRYLNLGMCNLKDI-PNLTAL 177
Query: 185 SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNN 244
LE L LS N L P L+ L+ + L F L SL+ LN+S NN
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN 237
Query: 245 ISGIYH 250
+ + H
Sbjct: 238 LMSLPH 243
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG-PIPMEFCQLDSLQILNI 240
SLE L LSDN+LS W G LS L+++ L N ++ + F L +LQ L I
Sbjct: 101 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 156
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 111/254 (43%), Gaps = 42/254 (16%)
Query: 187 LEGLYLSDNNLSGKIPRWL-GNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI 245
L L L N+LS +PR + N L + + N+ E F SLQ L +S N +
Sbjct: 119 LTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 246 SGI-------YHHASI---------LSLSKDQLVLAHNNF---EGEVPIQLCQLNKLQLI 286
+ + HA++ + ++ ++L +HN+ G V ++L L KLQ
Sbjct: 178 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL-KLQHN 236
Query: 287 DLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKN 346
+L++ + P ++ +D S E + + F K ++++ + +
Sbjct: 237 NLTDTAWLLNYPGLVE--------VDLSYNELEKIMY----HPFVKMQRLERLYISNNRL 284
Query: 347 IAYTYRGRVISYLSELDLSYNKL--IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNL 404
+A G+ I L LDLS+N L + + PQ R++ L L +N++ ST L
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD---RLENLYLDHNSIVTLKLSTHHTL 341
Query: 405 KHIKSLDLSYNKLD 418
K+L LS+N D
Sbjct: 342 ---KNLTLSHNDWD 352
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
G+ + L+ LD+S+N+L + L +Q L L N L P + ++ L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 413 SYNKLDGKIPLQLVE-LNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
+ N+L ++P L+ L L + N+L IP+ + GNP+LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
G+ + L+ LD+S+N+L + L +Q L L N L P + ++ L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 413 SYNKLDGKIPLQLVE-LNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
+ N+L ++P L+ L L + N+L IP+ + GNP+LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417
L EL+LS N+L P LT ++ L L + + + F +LK ++ L+LS+N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 10/191 (5%)
Query: 64 KSLMLLDVSNNNLQGHIPVKIGDF--LPSLKYFNISMNAFDSSIPT-SFGNMNFLISLDL 120
+ L +L +S N ++ +++G F LPSL + N +++PT +F ++ L L L
Sbjct: 59 RHLEILQLSKNLVR---KIEVGAFNGLPSLNTLELFDNRL-TTVPTQAFEYLSKLRELWL 114
Query: 121 SNNQLTGEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNF-NLTNLRRLQLDGNHFREILE 179
NN + IP + ++ F L NLR L L + ++I
Sbjct: 115 RNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDI-P 172
Query: 180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILN 239
+L+ LE L LS N L P L+ L+ + L F L SL+ LN
Sbjct: 173 NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELN 232
Query: 240 ISDNNISGIYH 250
+S NN+ + H
Sbjct: 233 LSHNNLMSLPH 243
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
G+ + L+ LD+S+N+L + L +Q L L N L P + ++ L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 413 SYNKLDGKIPLQLVE-LNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
+ N+L ++P L+ L L + N+L IP+ + GNP+LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
G+ + L+ LD+S+N+L + L +Q L L N L P + ++ L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 413 SYNKLDGKIPLQLVE-LNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
+ N+L ++P L+ L L + N+L IP+ + GNP+LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 162 TNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220
+ L RL L N R I SLS +L L+L +N LS ++P L +L +LQ + L N+
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275
Query: 221 FEGPIPMEFC 230
+FC
Sbjct: 276 ITKVGVNDFC 285
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 27/139 (19%)
Query: 65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ 124
SL L + N LQ +P + + L SL Y N+S N S F + L L L+ NQ
Sbjct: 53 SLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111
Query: 125 LTGEIPEHLAMGCVDXXXXXXXXXXXXGHLFPRNFNLTNLRRLQLDGNHFREILESL-SK 183
L + L G D LT L+ L+L N + + + + +
Sbjct: 112 L-----QSLPDGVFD--------------------KLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 184 CSSLEGLYLSDNNLSGKIP 202
+SL+ ++L DN P
Sbjct: 147 LTSLQYIWLHDNPWDCTCP 165
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 161 LTNLRRLQLDGNHFREILESL-SKCSSLEGLYLSDNNLSGKIPR-WLGNLSMLQHIILPE 218
LT L RL LD N + + K + L L L+DN L IPR NL L HI L
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLN 111
Query: 219 NHFE 222
N ++
Sbjct: 112 NPWD 115
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
G+ + L+ LD+S+N+L + L +Q L L N L P + ++ L L
Sbjct: 97 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 156
Query: 413 SYNKLDGKIPLQLVE-LNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
+ N L ++P L+ L L + N+L IP+ + GNP+LC
Sbjct: 157 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 210
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
G+ + L+ LD+S+N+L + L +Q L L N L P + ++ L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 413 SYNKLDGKIPLQLVE-LNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
+ N L ++P L+ L L + N+L IP+ + GNP+LC
Sbjct: 156 ANNDLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
G+ + L+ LD+S+N+L + L +Q L L N L P + ++ L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 413 SYNKLDGKIPLQLVE-LNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
+ N L ++P L+ L L + N+L IP+ + GNP+LC
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
G+ + L+ LD+S+N+L + L +Q L L N L P + ++ L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 413 SYNKLDGKIPLQLVE-LNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
+ N L ++P L+ L L + N+L IP+ + GNP+LC
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
G+ + L+ LD+S+N+L + L +Q L L N L P + ++ L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 413 SYNKLDGKIPLQLVE-LNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
+ N L ++P L+ L L + N+L IP+ + GNP+LC
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 357 SYLSELDLSYN---KLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLS 413
SY + LDLS+N +L + P LT + +L LS+N+L F + +++ LDLS
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTP--TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96
Query: 414 YNKLDGKIPLQLVELNTLAVFNVAHNNL 441
N L +L L V + +N++
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHI 124
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 160 NLTNLRRLQLDGNHFREILESL-SKCSSLEGLYLSDNNLSGKIPR-WLGNLSMLQHIILP 217
LT L RL LD N + + K + L L L+DN L IPR NL L HI L
Sbjct: 60 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLL 118
Query: 218 ENHFE 222
N ++
Sbjct: 119 NNPWD 123
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 353 GRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412
G+ + L+ LD+S+N+L + L +Q L L N L P + ++ L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 413 SYNKLDGKIPLQLVE-LNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467
+ N L ++P L+ L L + N+L IP+ + GNP+LC
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,783,794
Number of Sequences: 62578
Number of extensions: 570675
Number of successful extensions: 1826
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 470
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)