Query 038407
Match_columns 528
No_of_seqs 470 out of 4275
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 10:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.6E-50 1.2E-54 442.9 34.4 421 14-467 139-585 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.8E-48 3.9E-53 430.9 34.3 433 3-470 152-611 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.1E-44 6.6E-49 339.7 4.9 399 17-472 54-458 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.1E-40 4.6E-45 313.7 9.1 371 42-467 54-430 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4.7E-39 1E-43 291.8 -10.5 436 8-466 61-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 5E-37 1.1E-41 293.1 -4.7 370 14-470 6-379 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 8.8E-36 1.9E-40 284.6 -3.7 353 2-418 18-375 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 3.9E-36 8.4E-41 272.9 -9.0 391 6-464 105-562 (565)
9 KOG0618 Serine/threonine phosp 100.0 1.6E-32 3.5E-37 273.8 -3.6 247 163-466 242-489 (1081)
10 KOG0618 Serine/threonine phosp 99.9 5.9E-30 1.3E-34 255.6 -4.3 394 5-463 58-510 (1081)
11 KOG4237 Extracellular matrix p 99.9 2.1E-29 4.5E-34 229.0 -6.2 406 16-439 68-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 7.7E-24 1.7E-28 235.1 27.1 341 31-440 549-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.2E-27 6.8E-32 214.8 -2.9 295 114-472 68-365 (498)
14 PLN03210 Resistant to P. syrin 99.9 2.4E-23 5.2E-28 231.2 25.9 342 57-466 551-906 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 2.1E-22 4.5E-27 207.9 16.7 261 66-447 203-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 8.1E-22 1.7E-26 203.6 17.9 265 42-427 203-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 3.3E-20 7.2E-25 193.0 13.2 139 91-247 180-318 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 5.3E-20 1.1E-24 191.5 12.9 247 64-418 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.1E-20 4.5E-25 181.1 -0.6 108 358-465 194-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.5E-19 7.6E-24 172.5 2.1 225 20-246 3-263 (319)
21 KOG0617 Ras suppressor protein 99.7 1E-18 2.2E-23 141.6 -4.5 163 62-231 31-194 (264)
22 KOG0617 Ras suppressor protein 99.7 1.3E-18 2.7E-23 141.1 -4.4 67 358-427 128-194 (264)
23 PLN03150 hypothetical protein; 99.6 1.4E-15 3E-20 158.2 10.3 119 358-476 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 4.4E-14 9.5E-19 135.6 -2.5 177 62-248 73-249 (722)
25 KOG0532 Leucine-rich repeat (L 99.3 9E-14 2E-18 133.5 -2.8 191 188-440 78-271 (722)
26 COG4886 Leucine-rich repeat (L 99.3 7E-12 1.5E-16 124.9 7.0 102 142-246 97-199 (394)
27 PF14580 LRR_9: Leucine-rich r 99.2 5.5E-12 1.2E-16 107.5 4.7 108 63-175 18-126 (175)
28 KOG1909 Ran GTPase-activating 99.2 2.5E-12 5.5E-17 116.7 2.2 235 9-245 24-310 (382)
29 KOG3207 Beta-tubulin folding c 99.2 2.8E-12 6.1E-17 119.6 1.9 213 9-223 115-340 (505)
30 PF14580 LRR_9: Leucine-rich r 99.2 2E-11 4.4E-16 104.0 6.9 128 12-146 16-148 (175)
31 KOG3207 Beta-tubulin folding c 99.2 2.5E-12 5.4E-17 120.0 1.0 212 37-248 118-341 (505)
32 COG4886 Leucine-rich repeat (L 99.2 2.3E-11 5E-16 121.2 6.8 175 64-247 116-291 (394)
33 KOG1909 Ran GTPase-activating 99.2 1.3E-12 2.8E-17 118.6 -2.6 238 36-294 26-311 (382)
34 KOG1259 Nischarin, modulator o 99.2 4.7E-12 1E-16 112.5 0.9 85 356-443 328-413 (490)
35 KOG1259 Nischarin, modulator o 99.2 3.8E-12 8.2E-17 113.1 -0.0 129 89-223 284-413 (490)
36 PLN03150 hypothetical protein; 99.1 2.5E-10 5.5E-15 119.1 8.7 91 356-446 441-532 (623)
37 PF13855 LRR_8: Leucine rich r 99.1 7.1E-11 1.5E-15 82.8 3.0 61 381-441 1-61 (61)
38 KOG4658 Apoptotic ATPase [Sign 99.0 3.8E-10 8.3E-15 120.3 6.7 106 16-123 546-652 (889)
39 PF13855 LRR_8: Leucine rich r 99.0 2.1E-10 4.6E-15 80.4 3.1 61 357-417 1-61 (61)
40 KOG0531 Protein phosphatase 1, 99.0 1E-10 2.2E-15 116.8 -0.3 86 359-447 234-323 (414)
41 KOG0531 Protein phosphatase 1, 99.0 6E-11 1.3E-15 118.4 -2.0 264 114-467 50-319 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.9 6.5E-10 1.4E-14 118.6 5.3 204 89-296 523-732 (889)
43 KOG2120 SCF ubiquitin ligase, 98.8 1.3E-10 2.7E-15 103.4 -5.3 181 15-195 185-373 (419)
44 KOG1859 Leucine-rich repeat pr 98.6 1.2E-09 2.6E-14 108.4 -5.0 124 140-269 166-291 (1096)
45 KOG1859 Leucine-rich repeat pr 98.6 5.3E-10 1.2E-14 110.9 -9.5 179 8-198 102-292 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.5 2.7E-09 5.8E-14 95.1 -4.7 178 64-243 185-373 (419)
47 COG5238 RNA1 Ran GTPase-activa 98.5 2.8E-08 6.1E-13 87.6 1.0 185 12-198 27-255 (388)
48 KOG2982 Uncharacterized conser 98.4 5.4E-08 1.2E-12 87.0 -0.1 61 162-222 199-262 (418)
49 KOG4579 Leucine-rich repeat (L 98.3 3.9E-08 8.5E-13 77.6 -2.4 114 16-134 28-143 (177)
50 KOG2982 Uncharacterized conser 98.3 3.7E-07 8E-12 81.8 2.9 63 137-199 198-263 (418)
51 KOG4579 Leucine-rich repeat (L 98.3 6.3E-08 1.4E-12 76.4 -2.0 109 358-471 54-164 (177)
52 KOG1644 U2-associated snRNP A' 98.2 2.8E-06 6E-11 72.0 5.9 83 137-219 63-150 (233)
53 COG5238 RNA1 Ran GTPase-activa 98.1 1E-06 2.2E-11 78.0 2.3 211 37-247 27-286 (388)
54 KOG1644 U2-associated snRNP A' 98.1 4E-06 8.7E-11 71.1 5.5 102 139-242 43-149 (233)
55 PF12799 LRR_4: Leucine Rich r 98.1 2.4E-06 5.2E-11 54.6 2.4 36 406-442 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 98.1 2.5E-06 5.5E-11 54.5 2.4 37 381-418 1-37 (44)
57 PF13306 LRR_5: Leucine rich r 98.0 1.8E-05 4E-10 65.0 7.0 123 9-140 6-128 (129)
58 KOG3665 ZYG-1-like serine/thre 98.0 3.9E-06 8.4E-11 87.8 2.9 133 64-199 122-264 (699)
59 PF13306 LRR_5: Leucine rich r 97.9 2.2E-05 4.9E-10 64.5 6.1 110 31-147 3-112 (129)
60 KOG3665 ZYG-1-like serine/thre 97.8 1.7E-05 3.6E-10 83.1 3.7 134 40-176 122-264 (699)
61 PRK15386 type III secretion pr 97.7 7.3E-05 1.6E-09 72.2 7.3 72 38-124 50-123 (426)
62 PRK15386 type III secretion pr 97.7 0.00015 3.3E-09 70.0 9.3 137 11-173 48-188 (426)
63 KOG4341 F-box protein containi 97.7 1.3E-06 2.7E-11 82.1 -5.9 275 15-292 138-437 (483)
64 KOG2739 Leucine-rich acidic nu 97.3 8.7E-05 1.9E-09 66.0 1.7 109 36-148 39-153 (260)
65 KOG4341 F-box protein containi 97.3 1.4E-05 3.1E-10 75.2 -4.0 277 10-288 159-459 (483)
66 KOG2123 Uncharacterized conser 97.2 1.7E-05 3.7E-10 70.7 -4.6 97 114-215 20-123 (388)
67 KOG2739 Leucine-rich acidic nu 97.2 0.00022 4.7E-09 63.5 2.2 115 60-179 39-160 (260)
68 KOG2123 Uncharacterized conser 97.2 1.8E-05 3.9E-10 70.5 -4.5 100 14-119 18-123 (388)
69 KOG1947 Leucine rich repeat pr 96.9 9.3E-05 2E-09 76.1 -2.6 14 280-293 426-439 (482)
70 KOG1947 Leucine rich repeat pr 96.3 0.0017 3.7E-08 66.7 1.5 209 12-221 185-439 (482)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.0041 9E-08 32.8 0.3 11 384-394 3-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0062 1.3E-07 32.2 0.7 19 407-426 2-20 (22)
73 KOG4308 LRR-containing protein 94.1 0.00041 8.8E-09 69.7 -11.0 182 66-248 89-305 (478)
74 KOG0473 Leucine-rich repeat pr 94.0 0.0017 3.7E-08 56.7 -5.8 80 359-441 44-123 (326)
75 TIGR00864 PCC polycystin catio 93.7 0.026 5.5E-07 66.5 1.1 38 435-472 1-38 (2740)
76 smart00369 LRR_TYP Leucine-ric 93.0 0.11 2.3E-06 28.7 2.4 23 14-37 1-23 (26)
77 smart00370 LRR Leucine-rich re 93.0 0.11 2.3E-06 28.7 2.4 23 14-37 1-23 (26)
78 smart00369 LRR_TYP Leucine-ric 92.6 0.096 2.1E-06 28.8 1.9 14 405-418 2-15 (26)
79 smart00370 LRR Leucine-rich re 92.6 0.096 2.1E-06 28.8 1.9 14 405-418 2-15 (26)
80 PF13504 LRR_7: Leucine rich r 92.5 0.094 2E-06 25.6 1.5 11 164-174 3-13 (17)
81 KOG4308 LRR-containing protein 92.4 0.0017 3.6E-08 65.4 -9.6 183 17-200 89-305 (478)
82 KOG0473 Leucine-rich repeat pr 90.8 0.01 2.3E-07 52.0 -5.0 86 377-465 38-123 (326)
83 KOG3864 Uncharacterized conser 89.3 0.031 6.6E-07 48.1 -3.3 81 42-122 103-185 (221)
84 PF13516 LRR_6: Leucine Rich r 89.1 0.079 1.7E-06 28.5 -0.7 15 405-419 2-16 (24)
85 KOG3864 Uncharacterized conser 87.6 0.042 9E-07 47.3 -3.6 81 90-170 102-184 (221)
86 smart00365 LRR_SD22 Leucine-ri 85.2 0.72 1.6E-05 25.4 1.7 14 405-418 2-15 (26)
87 KOG4242 Predicted myosin-I-bin 85.0 3.8 8.3E-05 40.4 7.6 19 281-299 354-372 (553)
88 KOG4242 Predicted myosin-I-bin 74.5 12 0.00025 37.2 7.1 59 235-293 415-480 (553)
89 KOG3763 mRNA export factor TAP 74.2 2.4 5.3E-05 42.6 2.6 15 13-27 216-230 (585)
90 smart00368 LRR_RI Leucine rich 74.1 2.6 5.6E-05 23.6 1.6 14 405-418 2-15 (28)
91 smart00364 LRR_BAC Leucine-ric 73.3 2.5 5.4E-05 23.2 1.4 18 429-447 2-19 (26)
92 KOG3763 mRNA export factor TAP 70.1 2.1 4.7E-05 43.0 1.2 14 381-394 218-231 (585)
93 smart00082 LRRCT Leucine rich 54.2 6.3 0.00014 25.6 0.9 10 463-472 1-10 (51)
94 smart00367 LRR_CC Leucine-rich 50.0 11 0.00025 20.4 1.3 12 14-25 1-12 (26)
95 PF15102 TMEM154: TMEM154 prot 45.7 11 0.00024 30.8 1.2 20 509-528 66-85 (146)
96 TIGR00864 PCC polycystin catio 43.4 16 0.00035 44.6 2.5 32 387-418 1-32 (2740)
97 PRK14762 membrane protein; Pro 29.4 51 0.0011 17.7 1.7 17 506-522 7-23 (27)
98 PF08693 SKG6: Transmembrane a 27.6 43 0.00094 20.7 1.4 20 504-523 14-33 (40)
99 PF02439 Adeno_E3_CR2: Adenovi 24.7 47 0.001 20.1 1.2 19 502-520 7-25 (38)
100 PF07204 Orthoreo_P10: Orthore 23.7 36 0.00077 25.4 0.7 28 501-528 41-68 (98)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.6e-50 Score=442.92 Aligned_cols=421 Identities=32% Similarity=0.463 Sum_probs=197.6
Q ss_pred CCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCce
Q 038407 14 QHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKY 93 (528)
Q Consensus 14 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 93 (528)
+++|++|+|++|.+.+.+|.. ++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~ 216 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKW 216 (968)
T ss_pred cCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccE
Confidence 445555555555554444444 244555555555555554444545555555555555555544444444443 445555
Q ss_pred eeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCc
Q 038407 94 FNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNH 173 (528)
Q Consensus 94 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 173 (528)
|++++|.+.+..|..+.++++|++|++++|.+++.+|..+ .++++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 5555555544445555555555555555555444444433 244455555555555444444444444555555555554
Q ss_pred CCccC-cccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcc-------
Q 038407 174 FREIL-ESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNI------- 245 (528)
Q Consensus 174 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l------- 245 (528)
+.... ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 44322 2344444455555555444444444444444455555544444444444444444444444444444
Q ss_pred -----------------cccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCcccc
Q 038407 246 -----------------SGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHE 308 (528)
Q Consensus 246 -----------------~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~ 308 (528)
.+..+..+.....++.+++++|++++..|..+..++.|+.|++++|.+++.+|..+...+...
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 444333332223335555555555555555555555555555555555544443322211000
Q ss_pred ccccCCCCCCCCccccccccccccccccccceeeeeccccc-cccccccCcccEEECCCCcCccCCChhhhccccCCEEe
Q 038407 309 SYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY-TYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLN 387 (528)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 387 (528)
.+.+..+.... ........+|+.|++++|++.+..|..+..+++|+.|+
T Consensus 456 ------------------------------~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 505 (968)
T PLN00113 456 ------------------------------MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLK 505 (968)
T ss_pred ------------------------------EEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEE
Confidence 00000000000 00000123455555555555555555555555555555
Q ss_pred CCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407 388 LSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467 (528)
Q Consensus 388 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c 467 (528)
|++|++.+.+|..+.++++|++|+|++|++++.+|..+..+++|++|++++|++++.+|..+..+.+|+.+++++|++.+
T Consensus 506 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 55555555555555555555555555555555555555555555555555555555555544445555555555555444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-48 Score=430.90 Aligned_cols=433 Identities=33% Similarity=0.455 Sum_probs=323.9
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407 3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV 82 (528)
Q Consensus 3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 82 (528)
++|.+|..++++++|++|+|++|.+.+.+|.. +.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.
T Consensus 152 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred ccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence 45677778888888888888888877777766 46788888888888887777777777777788888877777766776
Q ss_pred hhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCC
Q 038407 83 KIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT 162 (528)
Q Consensus 83 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 162 (528)
.+.. +++|++|++++|.+++..|..+.++++|++|++++|.+.+.+|..+. ++++|++|++++|.+.+..+..+.+++
T Consensus 231 ~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 231 EIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred hHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCC
Confidence 6655 67777777777777777777777777777777777777666665553 566667777766666655555555666
Q ss_pred CCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCcccc------------------------CCCCCCeeecC
Q 038407 163 NLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLG------------------------NLSMLQHIILP 217 (528)
Q Consensus 163 ~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~------------------------~l~~L~~L~L~ 217 (528)
+|++|++++|.+.+..+ .+..+++|+.|++++|.+.+.+|..++ .+++|+.|+++
T Consensus 309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388 (968)
T ss_pred CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence 66666666665543322 444555555555555555444444444 44455555555
Q ss_pred CceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCC
Q 038407 218 ENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHI 297 (528)
Q Consensus 218 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 297 (528)
+|.+.+..|..+..+++|+.|++++|++++..+..+.....++.+++++|.+.+.++..+..+++|+.|++++|.+.+.+
T Consensus 389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 468 (968)
T PLN00113 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468 (968)
T ss_pred CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec
Confidence 55555556666778899999999999999887776655556699999999999999999999999999999999999888
Q ss_pred CCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccc--cccccccCcccEEECCCCcCccCCCh
Q 038407 298 PPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY--TYRGRVISYLSELDLSYNKLIGQIPP 375 (528)
Q Consensus 298 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~ 375 (528)
|..+....+....+ ..+.+.. ......+++|++|++++|.+.+.+|.
T Consensus 469 p~~~~~~~L~~L~l-------------------------------s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 517 (968)
T PLN00113 469 PDSFGSKRLENLDL-------------------------------SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517 (968)
T ss_pred CcccccccceEEEC-------------------------------cCCccCCccChhhhhhhccCEEECcCCcceeeCCh
Confidence 87553322111100 0000000 00011256899999999999999999
Q ss_pred hhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCC
Q 038407 376 QIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATF 455 (528)
Q Consensus 376 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l 455 (528)
.+..+++|+.|+|++|.+++.+|..|.++++|+.|||++|++++.+|..+..+++|+.+++++|++.+.+|.. ..+.++
T Consensus 518 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~ 596 (968)
T PLN00113 518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAI 596 (968)
T ss_pred HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975 367788
Q ss_pred CcCcccCCCCCCCCC
Q 038407 456 NESSYEGNPFLCGLP 470 (528)
Q Consensus 456 ~~l~l~~Np~~c~~~ 470 (528)
....+.|||..|+.+
T Consensus 597 ~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 597 NASAVAGNIDLCGGD 611 (968)
T ss_pred ChhhhcCCccccCCc
Confidence 888999999999854
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-44 Score=339.65 Aligned_cols=399 Identities=22% Similarity=0.236 Sum_probs=344.5
Q ss_pred CCEEEccCCcCcccCChhhhhc--CCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCcee
Q 038407 17 LEFVRLSHLNLNGEFPNWLLEN--NTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYF 94 (528)
Q Consensus 17 L~~L~Ls~~~~~~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L 94 (528)
-+.|+.+++.+. .+...-+.. -+.-+.|++++|++....+..|.++++|+.+++.+|.++ .||..... ..+++.|
T Consensus 54 ~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L 130 (873)
T KOG4194|consen 54 TRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKL 130 (873)
T ss_pred ceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEE
Confidence 345677777664 221100111 134467999999999888888999999999999999998 88876655 6689999
Q ss_pred eccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcC
Q 038407 95 NISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHF 174 (528)
Q Consensus 95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 174 (528)
+|.+|.|+.+....+..++.|+.|||+.|.++ .+|...|..-.++++|+|++|+|+......|.++.+|..|.|+.|++
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence 99999999888888999999999999999998 88887777778899999999999988888899999999999999999
Q ss_pred CccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchh
Q 038407 175 REILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHAS 253 (528)
Q Consensus 175 ~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 253 (528)
+.+|. .|..+++|+.|+|..|++...---.|.++++|+.|.+..|+|...-..+|.++.++++|+|+.|++..+...+.
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 99988 88889999999999999974435678899999999999999998778899999999999999999998877777
Q ss_pred hhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccc
Q 038407 254 ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKE 333 (528)
Q Consensus 254 ~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (528)
+....++.|+++.|.|....++....+++|++|+++.|+++..-+..+..
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~------------------------------ 339 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV------------------------------ 339 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH------------------------------
Confidence 77777799999999999988999999999999999999998544443322
Q ss_pred cccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCc---cccCCCCCCee
Q 038407 334 KKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPS---TFSNLKHIKSL 410 (528)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L 410 (528)
++.|++|.|++|.+......+|.++++|+.|||++|.++..+.+ .|.++++|+.|
T Consensus 340 ----------------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 340 ----------------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred ----------------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 55799999999999988888999999999999999999876554 58899999999
Q ss_pred eCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407 411 DLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP 472 (528)
Q Consensus 411 ~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~ 472 (528)
+|.+|++..+.-.+|.+++.|++|||.+|.|...-|.++.++ .|+++-+..-.++|||++.
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHH
Confidence 999999997777899999999999999999999999999888 9999999999999999876
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-40 Score=313.72 Aligned_cols=371 Identities=24% Similarity=0.215 Sum_probs=323.7
Q ss_pred CCEEEccCCCCccccCcCccCC--CCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEE
Q 038407 42 LESNFLLNNSLPGLFLLPIHCH--KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLD 119 (528)
Q Consensus 42 L~~L~L~~n~~~~~~~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 119 (528)
-+.|+.+.+.+.......+.+. ..-+.|++++|++. .+....+..+++|+.+++.+|.++ .+|.......+|+.|+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD 131 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence 3567778877766544444443 34566999999999 676666666999999999999998 6677666677799999
Q ss_pred ccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccC
Q 038407 120 LSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLS 198 (528)
Q Consensus 120 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~ 198 (528)
|.+|.|+ .+.......++.|+.|||+.|.|+....+.|..-.++++|+|++|+|+.+.. .|..+.+|.+|.|+.|+++
T Consensus 132 L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 132 LRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 9999998 7766666678999999999999998777888888999999999999999876 8899999999999999999
Q ss_pred ccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCccccc
Q 038407 199 GKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLC 278 (528)
Q Consensus 199 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~ 278 (528)
...+..|..+++|+.|+|..|+|.-.---.|.++++|+.|.+..|.+..+.+..|...-..++|+|+.|++...-.+++.
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence 77778898999999999999999855466899999999999999999999888888877779999999999999999999
Q ss_pred CCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCc
Q 038407 279 QLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISY 358 (528)
Q Consensus 279 ~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (528)
+++.|+.|++|+|.|...-++.+.. .++
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~Wsf----------------------------------------------------tqk 318 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSF----------------------------------------------------TQK 318 (873)
T ss_pred ccchhhhhccchhhhheeecchhhh----------------------------------------------------ccc
Confidence 9999999999999998655544322 458
Q ss_pred ccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCcc---ccccCCCCCEEE
Q 038407 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPL---QLVELNTLAVFN 435 (528)
Q Consensus 359 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~ 435 (528)
|++|+|++|.++...+..|..+..|++|+|++|.+..+-..+|.++.+|++|||++|.++..+.+ .|.++++|+.|+
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 99999999999988899999999999999999999988888999999999999999999876654 578899999999
Q ss_pred ccCCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407 436 VAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467 (528)
Q Consensus 436 ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c 467 (528)
+.+|++.....+++..++.|+++++.+|+..-
T Consensus 399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred ecCceeeecchhhhccCcccceecCCCCccee
Confidence 99999998888899999999999999998754
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.7e-39 Score=291.80 Aligned_cols=436 Identities=26% Similarity=0.379 Sum_probs=260.7
Q ss_pred chhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhc
Q 038407 8 PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDF 87 (528)
Q Consensus 8 ~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 87 (528)
.+.+.++..|.+|++++|+.+ ++|+.+ +.+..++.++.++|++. .+|+.+....+|+.+++++|.+. +++.++++
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~- 135 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGR- 135 (565)
T ss_pred cHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHH-
Confidence 345566777777777777776 666664 56777777777777765 45666666777777777777776 66666666
Q ss_pred CCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEE
Q 038407 88 LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRL 167 (528)
Q Consensus 88 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 167 (528)
+-.++.++..+|+++ ..|..+..+.++..+++.+|++. .+|+... .++.|++||...|-++ .+|+.++++.+|..|
T Consensus 136 ~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 136 LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELL 211 (565)
T ss_pred Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHH
Confidence 446777777777766 44556666666666666666666 5555443 2666666666666665 356666666666666
Q ss_pred EccCCcCCccCcccCCCCCCCEEEccCCccCccCCcc-ccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccc
Q 038407 168 QLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRW-LGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS 246 (528)
Q Consensus 168 ~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 246 (528)
++.+|++..+| .|.+|..|++++++.|.+. .+|.. ..+++++..||+++|++. ..|..++-+.+|+.||+++|.|+
T Consensus 212 yL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 212 YLRRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred HhhhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc
Confidence 66666666555 4555555555555555554 23322 234555555555555555 44555555555555555555555
Q ss_pred ccccchhhhccccceeeeccCccccc--------------------------------------Cc---ccccCCCCCCE
Q 038407 247 GIYHHASILSLSKDQLVLAHNNFEGE--------------------------------------VP---IQLCQLNKLQL 285 (528)
Q Consensus 247 ~~~~~~~~~~~~~~~L~L~~n~l~~~--------------------------------------~~---~~l~~l~~L~~ 285 (528)
+.+.. .+.+.++.|.+.+|.+... .+ .......+.+.
T Consensus 289 ~Lp~s--LgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki 366 (565)
T KOG0472|consen 289 SLPYS--LGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI 366 (565)
T ss_pred cCCcc--cccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence 44332 1122223333333322210 00 11222345666
Q ss_pred EEccCCcCCcCCCCC-CcCCccc-cccccCCCCCCCCccccccccccccccccccceeeeecccccc-ccccccCcccEE
Q 038407 286 IDLSNNILSGHIPPC-LDNTTLH-ESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT-YRGRVISYLSEL 362 (528)
Q Consensus 286 L~ls~n~l~~~~p~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L 362 (528)
|++++-+++ .+|.. |...... ...+......- ... ...+... ......+....+.+.+. .....+++|..|
T Consensus 367 L~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL--~el-Pk~L~~l--kelvT~l~lsnn~isfv~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 367 LDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQL--CEL-PKRLVEL--KELVTDLVLSNNKISFVPLELSQLQKLTFL 440 (565)
T ss_pred hcccccccc-cCCHHHHHHhhhcceEEEecccchH--hhh-hhhhHHH--HHHHHHHHhhcCccccchHHHHhhhcceee
Confidence 666666665 33322 2111100 00000000000 000 0000000 00000111111111110 001226689999
Q ss_pred ECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCc
Q 038407 363 DLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442 (528)
Q Consensus 363 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 442 (528)
++++|-+- .+|..++.+..|+.|+++.|++. ..|.....+..++.+-.++|++..+.|..+.++.+|++||+.+|.+.
T Consensus 441 ~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq 518 (565)
T KOG0472|consen 441 DLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ 518 (565)
T ss_pred ecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence 99999887 78999999999999999999998 88888888888888888899999877877999999999999999998
Q ss_pred cCCCCCCcccCCCCcCcccCCCCC
Q 038407 443 GKIPEWTAQFATFNESSYEGNPFL 466 (528)
Q Consensus 443 ~~~p~~~~~~~~l~~l~l~~Np~~ 466 (528)
.+|..++++.+++++.++||||.
T Consensus 519 -~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 -QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -hCChhhccccceeEEEecCCccC
Confidence 67777889999999999999987
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=5e-37 Score=293.13 Aligned_cols=370 Identities=27% Similarity=0.335 Sum_probs=244.7
Q ss_pred CCCCCEEEccCCcCc-ccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCc
Q 038407 14 QHDLEFVRLSHLNLN-GEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLK 92 (528)
Q Consensus 14 ~~~L~~L~Ls~~~~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~ 92 (528)
++-.+-.|+++|.++ +.+|..+ ..|+.+++|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+.. +|.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhH
Confidence 444566677777776 3566664 66777777777666554 45666677777777777777766 44444544 66777
Q ss_pred eeeccCCcCc-ccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccC
Q 038407 93 YFNISMNAFD-SSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDG 171 (528)
Q Consensus 93 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 171 (528)
.+.++.|++. +-+|..+-++..|..|||++|++. .+|..+- .-+++-+|++++|+|..+..+.|.++..|-.|||++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 7777777664 234555666777777777777776 6776653 456677777777777754444455677777777777
Q ss_pred CcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceee-ccCcccccCCCCCCEEEcccCccccccc
Q 038407 172 NHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE-GPIPMEFCQLDSLQILNISDNNISGIYH 250 (528)
Q Consensus 172 n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 250 (528)
|++..+|+.+..+..|++|+|++|++...--..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+.
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp---- 235 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP---- 235 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC----
Confidence 777777776667777777777777664322233344555666666665433 245666667777777777766654
Q ss_pred chhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccc
Q 038407 251 HASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAF 330 (528)
Q Consensus 251 ~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (528)
..|+.+..+++|+.|++|+|.++. +..+.+.
T Consensus 236 ---------------------~vPecly~l~~LrrLNLS~N~ite-L~~~~~~--------------------------- 266 (1255)
T KOG0444|consen 236 ---------------------IVPECLYKLRNLRRLNLSGNKITE-LNMTEGE--------------------------- 266 (1255)
T ss_pred ---------------------cchHHHhhhhhhheeccCcCceee-eeccHHH---------------------------
Confidence 446667777777777777777652 1111111
Q ss_pred ccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccc-ccCCccccCCCCCCe
Q 038407 331 YKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT-GSIPSTFSNLKHIKS 409 (528)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~ 409 (528)
..+|++|++|.|+++ .+|.+++.++.|+.|.+.+|+++ +-+|+.++.+.+|+.
T Consensus 267 -------------------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 267 -------------------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred -------------------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 235777777777777 67777777777777777777765 346777777777777
Q ss_pred eeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407 410 LDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470 (528)
Q Consensus 410 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~ 470 (528)
+..++|.+. ..|+.+..+..|+.|.|++|++. .+|+++.-++.++.+++..||.+--+|
T Consensus 321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 777777776 67777777777777777777776 567777667777777777777665443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=8.8e-36 Score=284.62 Aligned_cols=353 Identities=28% Similarity=0.369 Sum_probs=279.1
Q ss_pred Ccc-ccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCc-cc
Q 038407 2 DVV-AHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQ-GH 79 (528)
Q Consensus 2 ~~~-~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~ 79 (528)
|++ +.+|+.+..|++++.|.|...++. .+|+.+ +.+.+|++|.+++|++.. +...++.++.|+.+++..|++. .-
T Consensus 18 DFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsG 94 (1255)
T KOG0444|consen 18 DFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSG 94 (1255)
T ss_pred cCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCC
Confidence 455 689999999999999999999987 899985 899999999999999874 3456778999999999999876 34
Q ss_pred cChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCC
Q 038407 80 IPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF 159 (528)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 159 (528)
+|..++. +..|..|+|++|++. ..|..+.+-.++..|+|++|+|. .||..+|.++..|-.||+++|++. .+|+...
T Consensus 95 iP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~R 170 (1255)
T KOG0444|consen 95 IPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIR 170 (1255)
T ss_pred CCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHH
Confidence 8899998 889999999999998 77899999999999999999999 999999999999999999999998 4788899
Q ss_pred CCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccC-ccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCE
Q 038407 160 NLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLS-GKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQI 237 (528)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 237 (528)
.+.+|++|.|++|.+....- .+..+++|++|.+++.+-+ ..+|..+..+.+|+.+|++.|.+. .+|..+..+++|+.
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~Lrr 249 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRR 249 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhe
Confidence 99999999999998765422 5567788889999886432 357889999999999999999998 88999999999999
Q ss_pred EEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCc-CCCCCCcCCccccccccCCCC
Q 038407 238 LNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSG-HIPPCLDNTTLHESYIDTSSP 316 (528)
Q Consensus 238 L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~p~~~~~~~~~~~~~~~~~~ 316 (528)
|+|++|+|+.+...... -...++|+++.|+++ .+|.+++.+++|+.|.+.+|+++- -+|..++.+.
T Consensus 250 LNLS~N~iteL~~~~~~-W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~----------- 316 (1255)
T KOG0444|consen 250 LNLSGNKITELNMTEGE-WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI----------- 316 (1255)
T ss_pred eccCcCceeeeeccHHH-Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh-----------
Confidence 99999999876432111 123366777777776 566677777777777777776652 2344443322
Q ss_pred CCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccccc
Q 038407 317 ESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGS 396 (528)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 396 (528)
.|+.+..++|.+. ..|+.++.|..|+.|+|++|++- .
T Consensus 317 -----------------------------------------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-T 353 (1255)
T KOG0444|consen 317 -----------------------------------------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-T 353 (1255)
T ss_pred -----------------------------------------hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-e
Confidence 4555666666655 56666666666666666666665 5
Q ss_pred CCccccCCCCCCeeeCcCCcCc
Q 038407 397 IPSTFSNLKHIKSLDLSYNKLD 418 (528)
Q Consensus 397 ~~~~~~~l~~L~~L~Ls~N~l~ 418 (528)
.|+++.-++.|+.||+..|.-.
T Consensus 354 LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred chhhhhhcCCcceeeccCCcCc
Confidence 5666666666666666666544
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.9e-36 Score=272.93 Aligned_cols=391 Identities=27% Similarity=0.363 Sum_probs=275.1
Q ss_pred cCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407 6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIG 85 (528)
Q Consensus 6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 85 (528)
.+|+.++...+++.++.+.|.+. .+|+.+ +.+-.|+.++..+|++. ..|..+..+.+|..+++.+|++. ..|....
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i 180 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI 180 (565)
T ss_pred hccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH
Confidence 57888888888888888888887 677775 57888888888888876 45667777777888888888877 5666655
Q ss_pred hcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCC
Q 038407 86 DFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLR 165 (528)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 165 (528)
+ ++.|++|+...|-++ .+|..++.+.+|..|++.+|++. .+|. |.+|..|++++++.|.|+-.......+++++.
T Consensus 181 ~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 181 A-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLL 255 (565)
T ss_pred H-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccce
Confidence 5 677778877777665 56677777777777778777777 6662 34667777777777777643333344677777
Q ss_pred EEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeecc---------------------
Q 038407 166 RLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGP--------------------- 224 (528)
Q Consensus 166 ~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~--------------------- 224 (528)
.||+++|+++.+|..++-+.+|+.||+++|.++ ..|..++++ +|+.|-+.+|.+..+
T Consensus 256 vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~ 333 (565)
T KOG0472|consen 256 VLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIK 333 (565)
T ss_pred eeeccccccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhc
Confidence 777777777777776666777777777777776 456666666 667666666654200
Q ss_pred ----------------Cc----ccccCCCCCCEEEcccCcccccccchhhhcc-------------------------cc
Q 038407 225 ----------------IP----MEFCQLDSLQILNISDNNISGIYHHASILSL-------------------------SK 259 (528)
Q Consensus 225 ----------------~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-------------------------~~ 259 (528)
.+ .....+.+.+.|++++-+++.++...|-..- ..
T Consensus 334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkel 413 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKEL 413 (565)
T ss_pred cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHH
Confidence 00 0011223445555555555544443322221 11
Q ss_pred -ceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccccccccccc
Q 038407 260 -DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQE 338 (528)
Q Consensus 260 -~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (528)
..+.+++|.+. .+|..++.+++|+.|++++|.+. .+|..++..
T Consensus 414 vT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l---------------------------------- 457 (565)
T KOG0472|consen 414 VTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL---------------------------------- 457 (565)
T ss_pred HHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhh----------------------------------
Confidence 33444444443 66778888999999999998776 566555443
Q ss_pred ceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCc
Q 038407 339 TFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418 (528)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 418 (528)
..|+.||++.|+|. .+|..+..+..++.+-.++|++....|+.+.++.+|..|||.+|.+.
T Consensus 458 ------------------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq 518 (565)
T KOG0472|consen 458 ------------------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ 518 (565)
T ss_pred ------------------hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence 36999999999998 88998888888888888889999888888999999999999999998
Q ss_pred ccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCC
Q 038407 419 GKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNP 464 (528)
Q Consensus 419 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np 464 (528)
.+|..++++++|++|++++|++. ..++.+-...+...+++.+++
T Consensus 519 -~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 519 -QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred -hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhccc
Confidence 78889999999999999999998 333332233444444444443
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-32 Score=273.78 Aligned_cols=247 Identities=28% Similarity=0.362 Sum_probs=151.1
Q ss_pred CCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEccc
Q 038407 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISD 242 (528)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~ 242 (528)
+|++++++.|++..+|.++..+.+|+.++..+|++. .+|..+....+|+.|.+..|++. .+|....+++.|++|+|..
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehh
Confidence 455555555555555544455555555555555553 34444444555555555555554 3344445555666666666
Q ss_pred Ccccccccchhhhccc-cceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCc
Q 038407 243 NNISGIYHHASILSLS-KDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSET 321 (528)
Q Consensus 243 n~l~~~~~~~~~~~~~-~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 321 (528)
|++...++..+..... ++.+..+.|++.......=...+.|+.|.+.+|.+++..-+.+.+
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~------------------ 381 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN------------------ 381 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc------------------
Confidence 6555544422211111 233444444443222112222334555555555555433222222
Q ss_pred cccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccc
Q 038407 322 SFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTF 401 (528)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 401 (528)
+..|+.|+|++|++.......+.++..|+.|+||+|+++ .+|+.+
T Consensus 382 ----------------------------------~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 382 ----------------------------------FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred ----------------------------------ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence 457899999999888555566788889999999999998 677888
Q ss_pred cCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCC
Q 038407 402 SNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFL 466 (528)
Q Consensus 402 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~ 466 (528)
..++.|++|...+|++. ..| .+..+++|+.+|+|.|+++...-......++|+++++.||+|.
T Consensus 427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 89999999999999998 677 7888999999999999987643333324488999999999974
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=5.9e-30 Score=255.58 Aligned_cols=394 Identities=26% Similarity=0.282 Sum_probs=276.2
Q ss_pred ccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhh
Q 038407 5 AHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKI 84 (528)
Q Consensus 5 ~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 84 (528)
+++|..+..+.+|+.|+++.|.+. .+|..+ .++.+|+++.|.+|.+. ..|..+..+++|++|++|+|++. .+|.-+
T Consensus 58 ~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i 133 (1081)
T KOG0618|consen 58 SSFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVI 133 (1081)
T ss_pred ccCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhH
Confidence 566666666667777777766665 555553 56667777777666554 45566666667777777766655 333222
Q ss_pred hhc---------------------------------------CCCCc-eeeccCCcCcccCCcccc--------------
Q 038407 85 GDF---------------------------------------LPSLK-YFNISMNAFDSSIPTSFG-------------- 110 (528)
Q Consensus 85 ~~~---------------------------------------l~~L~-~L~L~~n~i~~~~~~~~~-------------- 110 (528)
... ...++ .|+|++|.+....-..+.
T Consensus 134 ~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~ 213 (1081)
T KOG0618|consen 134 EVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSE 213 (1081)
T ss_pred HhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccce
Confidence 110 01222 255555555411000000
Q ss_pred ---CCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCC
Q 038407 111 ---NMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSL 187 (528)
Q Consensus 111 ---~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L 187 (528)
.-++|+.|+.++|.+. ...... --.+|+++++++|+++. +|.++..+.+|+.+...+|++..++..+....+|
T Consensus 214 l~~~g~~l~~L~a~~n~l~-~~~~~p--~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L 289 (1081)
T KOG0618|consen 214 LEISGPSLTALYADHNPLT-TLDVHP--VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSL 289 (1081)
T ss_pred EEecCcchheeeeccCcce-eecccc--ccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhH
Confidence 1123444444455444 221111 23478999999999986 5688999999999999999999998888888999
Q ss_pred CEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCC-CCEEEcccCcccccccchhhhccccceeeecc
Q 038407 188 EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDS-LQILNISDNNISGIYHHASILSLSKDQLVLAH 266 (528)
Q Consensus 188 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~ 266 (528)
+.|.+..|.+. .+|....+++.|++|+|..|.+....+..+.-... |+.++.+.|++...+.........++.|++.+
T Consensus 290 ~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 290 VSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 99999999998 67888888999999999999998444433433333 78888888988877644333344458999999
Q ss_pred CcccccCcccccCCCCCCEEEccCCcCCcCCCC-CCcCCccccccccCCCCCCCCccccccccccccccccccceeeeec
Q 038407 267 NNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPP-CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTK 345 (528)
Q Consensus 267 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (528)
|.++...-..+.+..+|+.|++++|++. .+|+ ++.+
T Consensus 369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k------------------------------------------ 405 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK------------------------------------------ 405 (1081)
T ss_pred Ccccccchhhhccccceeeeeecccccc-cCCHHHHhc------------------------------------------
Confidence 9999988889999999999999999997 3443 3322
Q ss_pred cccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCcccc
Q 038407 346 NIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQL 425 (528)
Q Consensus 346 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 425 (528)
++.|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++...-...
T Consensus 406 ----------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 406 ----------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ----------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 457999999999999 78899999999999999999999 777 78999999999999999985433222
Q ss_pred ccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCC
Q 038407 426 VELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGN 463 (528)
Q Consensus 426 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~N 463 (528)
..-++|++||+++|.-.......+..+..+...++.-|
T Consensus 473 ~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 22389999999999854343443434444444443333
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.94 E-value=2.1e-29 Score=228.95 Aligned_cols=406 Identities=17% Similarity=0.136 Sum_probs=249.9
Q ss_pred CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccC-CcCccccChhhhhcCCCCcee
Q 038407 16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSN-NNLQGHIPVKIGDFLPSLKYF 94 (528)
Q Consensus 16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~l~~L~~L 94 (528)
.-..++|..|+|+ .+|+..|+.+++||.|||++|.|+.+.|.+|.+++.|..|-+-+ |+|+ .+|...+..+..++.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 4567788888887 78888888888888888888888888888888888887766554 7888 7888888888888888
Q ss_pred eccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcc------------cCCccCCCCC
Q 038407 95 NISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEG------------HLFPRNFNLT 162 (528)
Q Consensus 95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~ 162 (528)
.+..|++.-+..+.|+.++++..|.+.+|.+. .++...|..+..++++.+..|.+.. ..+-.+++..
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 88888888777788888888888888888887 7888777788888888888776321 1122223333
Q ss_pred CCCEEEccCCcCCccCc-ccC-CCCCCCEEEccCCccCccCC-ccccCCCCCCeeecCCceeeccCcccccCCCCCCEEE
Q 038407 163 NLRRLQLDGNHFREILE-SLS-KCSSLEGLYLSDNNLSGKIP-RWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILN 239 (528)
Q Consensus 163 ~L~~L~l~~n~~~~~~~-~~~-~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 239 (528)
-..-..+.+.++..+.+ .|. .+..+..=-.+.+...+..| ..|..+++|++|++++|+++.+-+.+|.+...++.|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 33333344444444433 111 11111111112222222323 3577888888888888888888888888888888888
Q ss_pred cccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCC-CCCCcCCccccccccCCCCCC
Q 038407 240 ISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHI-PPCLDNTTLHESYIDTSSPES 318 (528)
Q Consensus 240 L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-p~~~~~~~~~~~~~~~~~~~~ 318 (528)
|..|++..+....+.....+++|+|.+|+|+...|.+|..+..|.+|++-.|.+.-.. -.|++.+.-... ....+..
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~--~~~~~~C 382 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS--VVGNPRC 382 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC--CCCCCCC
Confidence 8888887777666666666688888888888888888999999999998888764211 011111100000 0000000
Q ss_pred C-Cccccccccccccccccccceeeeecc---cccccccccc---CcccE-EECCCCcCccCCChhhhccccCCEEeCCC
Q 038407 319 S-ETSFVDEGFAFYKEKKIQETFKFTTKN---IAYTYRGRVI---SYLSE-LDLSYNKLIGQIPPQIGNLTRIQTLNLSY 390 (528)
Q Consensus 319 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 390 (528)
. .....+..+.... .-.++..+ .........+ +-+.+ ...|+..++ .+|..+. ..-.+|++.+
T Consensus 383 q~p~~~~~~~~~dv~------~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~g 453 (498)
T KOG4237|consen 383 QSPGFVRQIPISDVA------FGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDG 453 (498)
T ss_pred CCCchhccccchhcc------ccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhccc
Confidence 0 0000000000000 00000000 0000000001 11111 223333333 3443332 3456778888
Q ss_pred ccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCC
Q 038407 391 NNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHN 439 (528)
Q Consensus 391 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N 439 (528)
|.++ .+|.. .+.+| .+|+++|+++...-..|.++++|.+|-|++|
T Consensus 454 n~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 454 NAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred chhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 8888 55654 56677 7888888887666667888888888877765
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=7.7e-24 Score=235.05 Aligned_cols=341 Identities=20% Similarity=0.217 Sum_probs=252.6
Q ss_pred CChhhhhcCCCCCEEEccCCCC------ccccCcCccCC-CCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcc
Q 038407 31 FPNWLLENNTKLESNFLLNNSL------PGLFLLPIHCH-KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDS 103 (528)
Q Consensus 31 ~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 103 (528)
+....|.+|++|+.|.+.++.. ...+|..+..+ .+|+.|.+.++.+. .+|..+. ..+|+.|++++|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-
Confidence 4455578899999998866532 23455666665 46999999999887 7887663 579999999999887
Q ss_pred cCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCC-cCCccCcccC
Q 038407 104 SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGN-HFREILESLS 182 (528)
Q Consensus 104 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~ 182 (528)
..+..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++| .+..+|..+
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 5677788899999999998764447775 346889999999998766677888889999999999986 455665544
Q ss_pred CCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccccc-------ccchhhh
Q 038407 183 KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGI-------YHHASIL 255 (528)
Q Consensus 183 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-------~~~~~~~ 255 (528)
.+++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+ .+++|+.|.+.++....+ .+.....
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 7889999999998655455543 457899999999987 556554 578888888877543222 1111122
Q ss_pred ccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccc
Q 038407 256 SLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKK 335 (528)
Q Consensus 256 ~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (528)
...++.|++++|...+.+|..++++++|+.|++++|...+.+|... .
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-------------------------------- 823 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N-------------------------------- 823 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C--------------------------------
Confidence 2345889999998888899999999999999999986555566443 1
Q ss_pred cccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCC
Q 038407 336 IQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415 (528)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 415 (528)
+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|+|++|
T Consensus 824 --------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 824 --------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred --------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 346888888887654445543 357888888888887 56777888888888888885
Q ss_pred cCcccCccccccCCCCCEEEccCCC
Q 038407 416 KLDGKIPLQLVELNTLAVFNVAHNN 440 (528)
Q Consensus 416 ~l~~~~~~~~~~l~~L~~L~ls~N~ 440 (528)
.-...+|.....+++|+.+++++|.
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCc
Confidence 4444566677778888888888875
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=3.2e-27 Score=214.82 Aligned_cols=295 Identities=20% Similarity=0.185 Sum_probs=199.4
Q ss_pred CCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccC-CcCCccCc-ccCCCCCCCEEE
Q 038407 114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDG-NHFREILE-SLSKCSSLEGLY 191 (528)
Q Consensus 114 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~-~~~~l~~L~~L~ 191 (528)
.-..++|..|+|+ .+|+..|..+++|+.|||++|.|+.+.++.|.++..+..|-+.+ |+|+.++. .|.++..++.|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4667777788887 77877777778888888888888777777777777776665555 77777776 677777777777
Q ss_pred ccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccc
Q 038407 192 LSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEG 271 (528)
Q Consensus 192 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~ 271 (528)
+.-|++.-...+.|..++++..|.+.+|.+..+....|.++.+++.+.+..|.+-......+... ++ .
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~------~~------a 214 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD------DL------A 214 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh------HH------h
Confidence 77777766666677777777777777777764444467777777777776665321110000000 00 0
Q ss_pred cCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccc
Q 038407 272 EVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY 351 (528)
Q Consensus 272 ~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (528)
..|..++......-..+.+.++...-+..+.
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~------------------------------------------------- 245 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFL------------------------------------------------- 245 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhh-------------------------------------------------
Confidence 0011111111111111111111100000000
Q ss_pred cccccCcccEEECCCCcCccCCC-hhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCC
Q 038407 352 RGRVISYLSELDLSYNKLIGQIP-PQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNT 430 (528)
Q Consensus 352 ~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 430 (528)
.....+..--.+.+...++.| ..|..+++|+.|+|++|+++++.+.+|++..++++|.|..|+|..+....|.++..
T Consensus 246 --c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~ 323 (498)
T KOG4237|consen 246 --CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG 323 (498)
T ss_pred --hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence 000111111122232333444 46999999999999999999999999999999999999999999888889999999
Q ss_pred CCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407 431 LAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP 472 (528)
Q Consensus 431 L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~ 472 (528)
|++|+|.+|+|+...|..+..+.+|..+.+-+|||.|+|.+.
T Consensus 324 L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 324 LKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred ceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 999999999999999999989999999999999999999876
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.4e-23 Score=231.17 Aligned_cols=342 Identities=18% Similarity=0.245 Sum_probs=242.0
Q ss_pred CcCccCCCCCCEEEccCCc------CccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 038407 57 LLPIHCHKSLMLLDVSNNN------LQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIP 130 (528)
Q Consensus 57 ~~~~~~~~~L~~L~ls~n~------l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 130 (528)
+.+|.++++|+.|.+..+. +...+|..+....++|+.|.+.++.+. ..|..| ...+|+.|++.+|.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 3457788888888886553 223456666554557888888888876 556666 4678888888888887 677
Q ss_pred hhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCc-CCccCcccCCCCCCCEEEccCCccCccCCccccCCC
Q 038407 131 EHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNH-FREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLS 209 (528)
Q Consensus 131 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 209 (528)
..+ ..+++|+.|+++++.....+ +.+..+++|++|++++|. +..+|..+..+++|+.|++++|.....+|..+ .++
T Consensus 628 ~~~-~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 628 DGV-HSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccc-ccCCCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 665 36888888888877543333 357778888888888864 55666677888888888888875444566544 678
Q ss_pred CCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcc-------cccCcccccCCCC
Q 038407 210 MLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNF-------EGEVPIQLCQLNK 282 (528)
Q Consensus 210 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l-------~~~~~~~l~~l~~ 282 (528)
+|+.|++++|.....+|.. ..+|+.|++++|.+..++... ....+.+|.+.++.. ....+......++
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc--cccccccccccccchhhccccccccchhhhhcccc
Confidence 8888888888655455532 467888888888877654321 112235555554321 1111222334567
Q ss_pred CCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEE
Q 038407 283 LQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSEL 362 (528)
Q Consensus 283 L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 362 (528)
|+.|++++|...+.+|..+.. +++|+.|
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~----------------------------------------------------L~~L~~L 807 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQN----------------------------------------------------LHKLEHL 807 (1153)
T ss_pred chheeCCCCCCccccChhhhC----------------------------------------------------CCCCCEE
Confidence 888888888776667765544 4479999
Q ss_pred ECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCc
Q 038407 363 DLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442 (528)
Q Consensus 363 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 442 (528)
++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|..+..+++|++|++++|+-.
T Consensus 808 ~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 808 EIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred ECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence 999886555677665 6899999999998766556543 468999999999998 68889999999999999996554
Q ss_pred cCCCCCCcccCCCCcCcccCCCCC
Q 038407 443 GKIPEWTAQFATFNESSYEGNPFL 466 (528)
Q Consensus 443 ~~~p~~~~~~~~l~~l~l~~Np~~ 466 (528)
..+|.....++.|+.+++.+|+.+
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CccCcccccccCCCeeecCCCccc
Confidence 567777778888888888887654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=2.1e-22 Score=207.91 Aligned_cols=261 Identities=28% Similarity=0.328 Sum_probs=137.0
Q ss_pred CCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEc
Q 038407 66 LMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLL 145 (528)
Q Consensus 66 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 145 (528)
-..|+++++.++ .+|..+. ++|+.|++++|+++. +|.. .++|++|++++|+++ .+|.. .++|+.|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----ccccceeec
Confidence 445666666666 5655443 356666666666653 3321 355666666666666 55531 245666666
Q ss_pred cCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccC
Q 038407 146 SNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPI 225 (528)
Q Consensus 146 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 225 (528)
++|.++. ++. ...+|+.|++++|+++.+|.. .++|+.|++++|.+.+ +|.. ...|+.|++++|.+++ +
T Consensus 270 s~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 270 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L 337 (788)
T ss_pred cCCchhh-hhh---chhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence 6666553 222 124456666666666655432 3456666666666653 2321 1245556666666652 3
Q ss_pred cccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCc
Q 038407 226 PMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTT 305 (528)
Q Consensus 226 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~ 305 (528)
|.. ..+|+.|++++|++++++.. .++|+.|++++|.+++ +|..
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~LP~l----------------------------p~~L~~L~Ls~N~L~~-LP~l----- 380 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLASLPTL----------------------------PSELYKLWAYNNRLTS-LPAL----- 380 (788)
T ss_pred ccc---ccccceEecCCCccCCCCCC----------------------------Ccccceehhhcccccc-Cccc-----
Confidence 321 13556666666665543221 1244555555555542 2211
Q ss_pred cccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCE
Q 038407 306 LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQT 385 (528)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 385 (528)
+.+|+.|++++|.+++ +|.. .++|+.
T Consensus 381 --------------------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~ 406 (788)
T PRK15387 381 --------------------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKE 406 (788)
T ss_pred --------------------------------------------------ccccceEEecCCcccC-CCCc---ccCCCE
Confidence 1235566666666552 3322 245666
Q ss_pred EeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCC
Q 038407 386 LNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447 (528)
Q Consensus 386 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~ 447 (528)
|++++|++++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..|.
T Consensus 407 LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 407 LMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred EEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 6666666653 3432 234556666666665 4555566666666666666666655444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=8.1e-22 Score=203.61 Aligned_cols=265 Identities=24% Similarity=0.291 Sum_probs=159.0
Q ss_pred CCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEcc
Q 038407 42 LESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121 (528)
Q Consensus 42 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 121 (528)
-..|+++.+.++. +|..+. ++|+.|++++|+++ .+|. .+++|++|++++|+++. +|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 4455666655552 333332 35666666666665 4443 14566666666666653 2322 3456666666
Q ss_pred CCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccC
Q 038407 122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKI 201 (528)
Q Consensus 122 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (528)
+|.++ .+|.. ..+|+.|++++|+++. +|. ..++|+.|++++|.+..++.. ..+|+.|++++|.+++ +
T Consensus 271 ~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 271 SNPLT-HLPAL----PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-L 337 (788)
T ss_pred CCchh-hhhhc----hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCCC---cccccccccccCcccc-c
Confidence 66665 55441 2456666666666663 222 235677777777777665542 2346667777777763 4
Q ss_pred CccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCC
Q 038407 202 PRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLN 281 (528)
Q Consensus 202 ~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~ 281 (528)
|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|++..++. . ..
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~-------------------------l---~~ 382 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA-------------------------L---PS 382 (788)
T ss_pred ccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc-------------------------c---cc
Confidence 431 2467788888887773 3432 3466777777777664321 1 13
Q ss_pred CCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccE
Q 038407 282 KLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSE 361 (528)
Q Consensus 282 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 361 (528)
+|+.|++++|.+++ +|.. +++|+.
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l-------------------------------------------------------~s~L~~ 406 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL-------------------------------------------------------PSELKE 406 (788)
T ss_pred ccceEEecCCcccC-CCCc-------------------------------------------------------ccCCCE
Confidence 56777777777662 3321 225777
Q ss_pred EECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCcccccc
Q 038407 362 LDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE 427 (528)
Q Consensus 362 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 427 (528)
|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..+..
T Consensus 407 LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 407 LMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred EEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 8888888773 5543 246777888888887 56777888888888888888888776665543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=3.3e-20 Score=192.97 Aligned_cols=139 Identities=23% Similarity=0.379 Sum_probs=61.7
Q ss_pred CceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEcc
Q 038407 91 LKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD 170 (528)
Q Consensus 91 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 170 (528)
...|+++++.++. +|..+. +.|+.|++++|+++ .+|..++ .+|++|++++|.++. +|..+ ..+|+.|+++
T Consensus 180 ~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence 3444444444442 233221 24455555555554 4444332 245555555555442 22222 1245555555
Q ss_pred CCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccc
Q 038407 171 GNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISG 247 (528)
Q Consensus 171 ~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 247 (528)
+|.+..+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|+++.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence 555554444332 34555555555554 2343332 345555555555552 232221 245555555555543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=5.3e-20 Score=191.50 Aligned_cols=247 Identities=25% Similarity=0.365 Sum_probs=158.4
Q ss_pred CCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEE
Q 038407 64 KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYL 143 (528)
Q Consensus 64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 143 (528)
.+...|+++++.++ .+|..+ .++++.|++++|+++. +|..+. .+|++|++++|.++ .+|..+. .+|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEE
Confidence 34567777777777 666554 3467778888887773 444332 46788888888777 6776553 367788
Q ss_pred EccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeec
Q 038407 144 LLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG 223 (528)
Q Consensus 144 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 223 (528)
++++|.+.. +|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|.++. +|..+. +.|+.|++++|.++.
T Consensus 247 ~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 247 ELSINRITE-LPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred ECcCCccCc-CChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence 888887773 444432 467888888888877765443 478888888887773 444332 467888888888874
Q ss_pred cCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcC
Q 038407 224 PIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303 (528)
Q Consensus 224 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~ 303 (528)
+|..+ .++|+.|++++|.+++++. .+ .++|+.|++++|+++ .+|..+
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt~LP~-------------------------~l--~~sL~~L~Ls~N~L~-~LP~~l-- 365 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALTSLPA-------------------------SL--PPELQVLDVSKNQIT-VLPETL-- 365 (754)
T ss_pred -CCccc--cccceeccccCCccccCCh-------------------------hh--cCcccEEECCCCCCC-cCChhh--
Confidence 44333 2577888888877765421 11 146777777777665 233221
Q ss_pred CccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccC
Q 038407 304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRI 383 (528)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 383 (528)
++.|+.|++++|.++ .+|..+. ..|
T Consensus 366 ----------------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL 390 (754)
T PRK15370 366 ----------------------------------------------------PPTITTLDVSRNALT-NLPENLP--AAL 390 (754)
T ss_pred ----------------------------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHH
Confidence 235777777777776 4455443 357
Q ss_pred CEEeCCCccccccCCccc----cCCCCCCeeeCcCCcCc
Q 038407 384 QTLNLSYNNLTGSIPSTF----SNLKHIKSLDLSYNKLD 418 (528)
Q Consensus 384 ~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N~l~ 418 (528)
+.|++++|+++ .+|..+ ..++.+..|++.+|.++
T Consensus 391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77777777776 344332 34467777777777776
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=2.1e-20 Score=181.12 Aligned_cols=108 Identities=22% Similarity=0.311 Sum_probs=67.3
Q ss_pred cccEEECCCCcCccC----CChhhhccccCCEEeCCCccccccCCcccc-----CCCCCCeeeCcCCcCcc----cCccc
Q 038407 358 YLSELDLSYNKLIGQ----IPPQIGNLTRIQTLNLSYNNLTGSIPSTFS-----NLKHIKSLDLSYNKLDG----KIPLQ 424 (528)
Q Consensus 358 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~ 424 (528)
+|+.|++++|.+.+. ++..+..+++|+.|++++|.+++.....+. ..+.|++|++++|.++. .+...
T Consensus 194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 273 (319)
T cd00116 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV 273 (319)
T ss_pred CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence 577777777766532 223445567777888887777642222221 23678888888888762 22344
Q ss_pred cccCCCCCEEEccCCCCccC----CCCCCccc-CCCCcCcccCCCC
Q 038407 425 LVELNTLAVFNVAHNNLSGK----IPEWTAQF-ATFNESSYEGNPF 465 (528)
Q Consensus 425 ~~~l~~L~~L~ls~N~l~~~----~p~~~~~~-~~l~~l~l~~Np~ 465 (528)
+..+++|+++++++|.++.. ....+... +.++.+++.+|||
T Consensus 274 ~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 274 LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 55567788888888888744 33333334 5677788888876
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=3.5e-19 Score=172.52 Aligned_cols=225 Identities=25% Similarity=0.218 Sum_probs=96.0
Q ss_pred EEccCCcCcccCChhhhhcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCcCcc------ccChhhhhcCC
Q 038407 20 VRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNNLQG------HIPVKIGDFLP 89 (528)
Q Consensus 20 L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l~~------~~~~~~~~~l~ 89 (528)
|+|+++.+++.-...+|..++.|++|++++|.+++. ++..+...+++++++++++.+.+ .++..+.. ++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cC
Confidence 444445444322223344555555555555555322 22233344455555555554431 11112222 44
Q ss_pred CCceeeccCCcCcccCCccccCCCC---CCEEEccCCcccc----cCChhhhhCC-CCCCEEEccCCcCccc----CCcc
Q 038407 90 SLKYFNISMNAFDSSIPTSFGNMNF---LISLDLSNNQLTG----EIPEHLAMGC-VDLEYLLLSNNSLEGH----LFPR 157 (528)
Q Consensus 90 ~L~~L~L~~n~i~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~ 157 (528)
+|+.|++++|.+....+..+..+.+ |++|++++|++++ .+...+ ..+ ++|++|++++|.+++. ....
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL-KDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH-HhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 5555555555554333333333333 5555555555441 111111 123 4555555555555421 1122
Q ss_pred CCCCCCCCEEEccCCcCCc-----cCcccCCCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeeccCccc
Q 038407 158 NFNLTNLRRLQLDGNHFRE-----ILESLSKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEGPIPME 228 (528)
Q Consensus 158 ~~~l~~L~~L~l~~n~~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 228 (528)
+..+++|++|++++|.+.. ++..+..+++|++|++++|.+.+. +...+..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 3344455555555555442 111233334555555555554322 1222334455555555555554321111
Q ss_pred cc-----CCCCCCEEEcccCccc
Q 038407 229 FC-----QLDSLQILNISDNNIS 246 (528)
Q Consensus 229 l~-----~l~~L~~L~L~~n~l~ 246 (528)
+. ..+.|++|++++|.++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCC
Confidence 11 1245555555555544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1e-18 Score=141.59 Aligned_cols=163 Identities=29% Similarity=0.447 Sum_probs=107.2
Q ss_pred CCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC
Q 038407 62 CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE 141 (528)
Q Consensus 62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 141 (528)
.+.+.+.|.+|+|+++ .+|..+.. +.+|+.|++++|+|+ ..|..+..+++|+.|+++-|++. .+|.++ +.++.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhh
Confidence 3445555666666666 55555555 556666666666665 45556666666666666666665 556554 3566666
Q ss_pred EEEccCCcCcc-cCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCce
Q 038407 142 YLLLSNNSLEG-HLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220 (528)
Q Consensus 142 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 220 (528)
.||+.+|.+.+ ..|..|+.+..|+.|++++|.+.-+|+.++.+.+|+.|.+..|.+- ..|..++.+..|++|.+.+|+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 66666666553 3556666777777777777777777777777777777777777776 567777777778888888887
Q ss_pred eeccCcccccC
Q 038407 221 FEGPIPMEFCQ 231 (528)
Q Consensus 221 i~~~~~~~l~~ 231 (528)
++ .+|..++.
T Consensus 185 l~-vlppel~~ 194 (264)
T KOG0617|consen 185 LT-VLPPELAN 194 (264)
T ss_pred ee-ecChhhhh
Confidence 77 44544433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.3e-18 Score=141.07 Aligned_cols=67 Identities=33% Similarity=0.576 Sum_probs=57.5
Q ss_pred cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCcccccc
Q 038407 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE 427 (528)
Q Consensus 358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 427 (528)
.|+.|++++|.+. .+|..++.+++|+.|.+..|.+- ..|..++.++.|++|++.+|+++ .+|..++.
T Consensus 128 tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 128 TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 4777888888887 88889999999999999999988 78888999999999999999998 56655554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.62 E-value=1.4e-15 Score=158.17 Aligned_cols=119 Identities=34% Similarity=0.624 Sum_probs=109.3
Q ss_pred cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA 437 (528)
Q Consensus 358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls 437 (528)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCCccc-CCCCcCcccCCCCCCCCCCCCCCC
Q 038407 438 HNNLSGKIPEWTAQF-ATFNESSYEGNPFLCGLPLPKSCN 476 (528)
Q Consensus 438 ~N~l~~~~p~~~~~~-~~l~~l~l~~Np~~c~~~l~~~c~ 476 (528)
+|++++.+|..+... ..+..+++.+|+..|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999877553 456788999999999987655664
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=4.4e-14 Score=135.59 Aligned_cols=177 Identities=27% Similarity=0.400 Sum_probs=156.9
Q ss_pred CCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC
Q 038407 62 CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE 141 (528)
Q Consensus 62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 141 (528)
.+.--...|++.|++. ++|..+.. +..|+.+.+..|.+. .+|..+.++..|.+++++.|+++ .+|..++ .+ -|+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLK 146 (722)
T ss_pred cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-cce
Confidence 3445567899999998 89988877 678999999999987 77899999999999999999999 9999886 34 499
Q ss_pred EEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCcee
Q 038407 142 YLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF 221 (528)
Q Consensus 142 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 221 (528)
.|.+++|+++. +|..+.....|..|+.+.|.+..+++.++.+.+|+.|.+..|++. .+|..+..+ .|..||++.|++
T Consensus 147 vli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 147 VLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred eEEEecCcccc-CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence 99999999994 778888899999999999999999999999999999999999998 677777755 499999999999
Q ss_pred eccCcccccCCCCCCEEEcccCccccc
Q 038407 222 EGPIPMEFCQLDSLQILNISDNNISGI 248 (528)
Q Consensus 222 ~~~~~~~l~~l~~L~~L~L~~n~l~~~ 248 (528)
+ .+|-.|..|+.|++|-|.+|.+..-
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCCCC
Confidence 9 7899999999999999999999754
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=9e-14 Score=133.48 Aligned_cols=191 Identities=25% Similarity=0.454 Sum_probs=112.4
Q ss_pred CEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccC
Q 038407 188 EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHN 267 (528)
Q Consensus 188 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n 267 (528)
...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++.+..|++++++.|+++..+.. ...+.++.+.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lpLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDG--LCDLPLKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChh--hhcCcceeEEEecC
Confidence 44555566555 45555555555666666666665 4555666666666666666666544322 22233344444555
Q ss_pred cccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccc
Q 038407 268 NFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNI 347 (528)
Q Consensus 268 ~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (528)
+++ .+|..++..++|..||.+.|.+. .+|..++.
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~-------------------------------------------- 187 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY-------------------------------------------- 187 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh--------------------------------------------
Confidence 544 44555666777777777777765 34443333
Q ss_pred cccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCcccccc
Q 038407 348 AYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE 427 (528)
Q Consensus 348 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 427 (528)
+.+|+.|.+..|++. .+|..+..| .|..||++.|++. .+|-.|..+++|++|-|.+|.++ ..|..+..
T Consensus 188 --------l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 188 --------LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred --------HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence 225666677777766 456666644 3777777777777 66667777777777777777776 44544433
Q ss_pred ---CCCCCEEEccCCC
Q 038407 428 ---LNTLAVFNVAHNN 440 (528)
Q Consensus 428 ---l~~L~~L~ls~N~ 440 (528)
..=.++|+..-++
T Consensus 256 kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 256 KGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccceeeeeeecchhcc
Confidence 2234566666664
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=7e-12 Score=124.94 Aligned_cols=102 Identities=33% Similarity=0.432 Sum_probs=47.1
Q ss_pred EEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCC-CCCEEEccCCccCccCCccccCCCCCCeeecCCce
Q 038407 142 YLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCS-SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220 (528)
Q Consensus 142 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 220 (528)
.++...+.+.. .......++.++.|++.+|.+..+++...... +|+.|++++|.+. .++..+..++.|+.|++++|+
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 45555554421 12222333455555555555555555444442 5555555555554 233344445555555555555
Q ss_pred eeccCcccccCCCCCCEEEcccCccc
Q 038407 221 FEGPIPMEFCQLDSLQILNISDNNIS 246 (528)
Q Consensus 221 i~~~~~~~l~~l~~L~~L~L~~n~l~ 246 (528)
++ .++......+.|+.|++++|++.
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc
Confidence 54 22322223444444444444444
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=5.5e-12 Score=107.49 Aligned_cols=108 Identities=30% Similarity=0.383 Sum_probs=27.7
Q ss_pred CCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCE
Q 038407 63 HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEY 142 (528)
Q Consensus 63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 142 (528)
..++++|+|++|.++ .+ ..+...+.+|+.|++++|.|+.. +.+..+++|++|++++|+++ .+...+...+++|++
T Consensus 18 ~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 344555666666555 33 23332245666666666666533 23555666666666666666 554443334566666
Q ss_pred EEccCCcCccc-CCccCCCCCCCCEEEccCCcCC
Q 038407 143 LLLSNNSLEGH-LFPRNFNLTNLRRLQLDGNHFR 175 (528)
Q Consensus 143 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~ 175 (528)
|++++|+|... ....+..+++|+.|++.+|.+.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66666666531 1122334445555555555444
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=2.5e-12 Score=116.71 Aligned_cols=235 Identities=18% Similarity=0.115 Sum_probs=144.0
Q ss_pred hhhhCCCCCCEEEccCCcCcccCChh---hhhcCCCCCEEEccCCCCcc----ccCc-------CccCCCCCCEEEccCC
Q 038407 9 NFFYHQHDLEFVRLSHLNLNGEFPNW---LLENNTKLESNFLLNNSLPG----LFLL-------PIHCHKSLMLLDVSNN 74 (528)
Q Consensus 9 ~~l~~~~~L~~L~Ls~~~~~~~~~~~---~~~~l~~L~~L~L~~n~~~~----~~~~-------~~~~~~~L~~L~ls~n 74 (528)
+.+..+..+++++||+|.+....... .+.+.+.|+.-+++.- ++| .+|+ ++.++++|++||||+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 45567788899999999886433322 2456677777777652 222 2332 3456778888899888
Q ss_pred cCccccChhhh---hcCCCCceeeccCCcCcccC-------------CccccCCCCCCEEEccCCcccccCCh----hhh
Q 038407 75 NLQGHIPVKIG---DFLPSLKYFNISMNAFDSSI-------------PTSFGNMNFLISLDLSNNQLTGEIPE----HLA 134 (528)
Q Consensus 75 ~l~~~~~~~~~---~~l~~L~~L~L~~n~i~~~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~ 134 (528)
.+....+..+. +.+..|++|.|.+|.+...- ......-+.|+++...+|++. ..+. ..+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~ 181 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAF 181 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHH
Confidence 87644443322 33678888888888775211 112334467788888877775 3332 234
Q ss_pred hCCCCCCEEEccCCcCccc----CCccCCCCCCCCEEEccCCcCCccCc-----ccCCCCCCCEEEccCCccCccCCccc
Q 038407 135 MGCVDLEYLLLSNNSLEGH----LFPRNFNLTNLRRLQLDGNHFREILE-----SLSKCSSLEGLYLSDNNLSGKIPRWL 205 (528)
Q Consensus 135 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l 205 (528)
...+.|+.+.++.|.|... ....+..+++|+.|||++|.++.-.. .++.+++|++|++++|.+......+|
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 4556777777777776532 12334567777777777777664322 56666777777777777654333322
Q ss_pred -----cCCCCCCeeecCCceeecc----CcccccCCCCCCEEEcccCcc
Q 038407 206 -----GNLSMLQHIILPENHFEGP----IPMEFCQLDSLQILNISDNNI 245 (528)
Q Consensus 206 -----~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l 245 (528)
...|.|+.|.+.+|.|+.. +...+...+.|+.|+|++|.+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2256777777777776532 122234456677777777766
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.8e-12 Score=119.62 Aligned_cols=213 Identities=21% Similarity=0.110 Sum_probs=148.5
Q ss_pred hhhhCCCCCCEEEccCCcCcccCCh-hhhhcCCCCCEEEccCCCCccc--cCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407 9 NFFYHQHDLEFVRLSHLNLNGEFPN-WLLENNTKLESNFLLNNSLPGL--FLLPIHCHKSLMLLDVSNNNLQGHIPVKIG 85 (528)
Q Consensus 9 ~~l~~~~~L~~L~Ls~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 85 (528)
.--.++++|+.+.|.++.+. ..+. .....|++++.|||++|-+... +......+++|+.|+++.|++.-.......
T Consensus 115 akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred HHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 33467788999999988875 3332 3467899999999999977653 334456789999999999987633333333
Q ss_pred hcCCCCceeeccCCcCcccCC-ccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCccc-CCccCCCCCC
Q 038407 86 DFLPSLKYFNISMNAFDSSIP-TSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGH-LFPRNFNLTN 163 (528)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~ 163 (528)
..+++|+.|.++.|.++...- .....+++|+.|++..|... .+...-..-+..|++|||++|.+-.. .......++.
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 347789999999998873221 23446789999999998422 11111122356799999999987642 2244567889
Q ss_pred CCEEEccCCcCCccCc--c-----cCCCCCCCEEEccCCccCcc-CCccccCCCCCCeeecCCceeec
Q 038407 164 LRRLQLDGNHFREILE--S-----LSKCSSLEGLYLSDNNLSGK-IPRWLGNLSMLQHIILPENHFEG 223 (528)
Q Consensus 164 L~~L~l~~n~~~~~~~--~-----~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~ 223 (528)
|+.|+++.+.+.++.. . ....++|++|++..|++... .-..+..+++|+.|.+..|.++.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 9999999998887632 1 34578999999999988532 22345567788888888887763
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=2e-11 Score=104.04 Aligned_cols=128 Identities=23% Similarity=0.211 Sum_probs=43.5
Q ss_pred hCCCCCCEEEccCCcCcccCChhhhh-cCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCC
Q 038407 12 YHQHDLEFVRLSHLNLNGEFPNWLLE-NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPS 90 (528)
Q Consensus 12 ~~~~~L~~L~Ls~~~~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~ 90 (528)
.+..++++|+|.+|.|+ .+.. ++ .+.+|+.|+|++|.++.. +.+..+++|+.|++++|+++ .+...+...+|+
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp ---------------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred ccccccccccccccccc-cccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 34456778888888776 3432 23 467788888888877754 34666777888888888877 565444444678
Q ss_pred CceeeccCCcCcccCC-ccccCCCCCCEEEccCCcccccCCh---hhhhCCCCCCEEEcc
Q 038407 91 LKYFNISMNAFDSSIP-TSFGNMNFLISLDLSNNQLTGEIPE---HLAMGCVDLEYLLLS 146 (528)
Q Consensus 91 L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~ 146 (528)
|++|++++|+|..... ..+..+++|+.|++.+|.++ .-+. .+...+|+|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCE
Confidence 8888888887764221 44556777777777777776 3332 223356666666543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.5e-12 Score=119.98 Aligned_cols=212 Identities=22% Similarity=0.191 Sum_probs=147.8
Q ss_pred hcCCCCCEEEccCCCCccccC-cCccCCCCCCEEEccCCcCccc-cChhhhhcCCCCceeeccCCcCcccCCc-cccCCC
Q 038407 37 ENNTKLESNFLLNNSLPGLFL-LPIHCHKSLMLLDVSNNNLQGH-IPVKIGDFLPSLKYFNISMNAFDSSIPT-SFGNMN 113 (528)
Q Consensus 37 ~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~ 113 (528)
+++.+|+++.|.++.+..... .....|++++.||||+|-+... ....+.+.+|+|+.|+++.|++...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 567889999999887754322 3566789999999999976622 1234556689999999999988632221 122568
Q ss_pred CCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEE
Q 038407 114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLY 191 (528)
Q Consensus 114 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~ 191 (528)
.|+.|.++.|.++..--..+...+|+|+.|+++.|............+..|+.|+|++|.+...+. ....++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 899999999998754333444578999999999985332333344467789999999998887763 667888899999
Q ss_pred ccCCccCcc-CCcc-----ccCCCCCCeeecCCceeecc-CcccccCCCCCCEEEcccCccccc
Q 038407 192 LSDNNLSGK-IPRW-----LGNLSMLQHIILPENHFEGP-IPMEFCQLDSLQILNISDNNISGI 248 (528)
Q Consensus 192 L~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~ 248 (528)
++.+.+... .|+. ...+++|+.|++..|+|.+. .-..+..+++|+.|.+..|.+...
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 998887643 2222 34567888888888888532 112344566777777777776543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=2.3e-11 Score=121.23 Aligned_cols=175 Identities=37% Similarity=0.530 Sum_probs=74.4
Q ss_pred CCCCEEEccCCcCccccChhhhhcCC-CCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCE
Q 038407 64 KSLMLLDVSNNNLQGHIPVKIGDFLP-SLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEY 142 (528)
Q Consensus 64 ~~L~~L~ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 142 (528)
+.++.|++.+|.++ .++..... .+ +|+.|++++|.+. .+|..++.+++|+.|++++|+++ .+|.... ..+.|+.
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN 190 (394)
T ss_pred cceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence 44444444444444 34333332 21 4444444444444 22233444444444444444444 4443321 2344444
Q ss_pred EEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceee
Q 038407 143 LLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222 (528)
Q Consensus 143 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 222 (528)
|++++|+++. ++........|+++.+++|.+...+..+..+.++..+.+.+|++. ..+..+..++.++.|++++|.++
T Consensus 191 L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 191 LDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eeccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence 4444444442 222222333344444444443333333444444444444444443 12333444444444444444444
Q ss_pred ccCcccccCCCCCCEEEcccCcccc
Q 038407 223 GPIPMEFCQLDSLQILNISDNNISG 247 (528)
Q Consensus 223 ~~~~~~l~~l~~L~~L~L~~n~l~~ 247 (528)
.... +..+.+++.|++++|.+..
T Consensus 269 ~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 269 SISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccc--ccccCccCEEeccCccccc
Confidence 2211 4444444444444444443
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=1.3e-12 Score=118.62 Aligned_cols=238 Identities=22% Similarity=0.222 Sum_probs=131.0
Q ss_pred hhcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCc---CccccChhhh------hcCCCCceeeccCCcCc
Q 038407 36 LENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNN---LQGHIPVKIG------DFLPSLKYFNISMNAFD 102 (528)
Q Consensus 36 ~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~~------~~l~~L~~L~L~~n~i~ 102 (528)
...+..++.++|++|.+... +...+...++|+..++|+-. +..++|..+. ..+|+|++|+||+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 35678889999999988643 33456677889999888642 2234444322 12568888888888876
Q ss_pred ccCCcc----ccCCCCCCEEEccCCcccccCChhh-h------------hCCCCCCEEEccCCcCcccC----CccCCCC
Q 038407 103 SSIPTS----FGNMNFLISLDLSNNQLTGEIPEHL-A------------MGCVDLEYLLLSNNSLEGHL----FPRNFNL 161 (528)
Q Consensus 103 ~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~-~------------~~l~~L~~L~l~~n~l~~~~----~~~~~~l 161 (528)
...+.. +..+..|++|.|.+|.+. ...... . ..-+.|+++...+|++.... ...|...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 444433 345677888888888775 221111 0 12234566666666554311 1123344
Q ss_pred CCCCEEEccCCcCCccC-----cccCCCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeeccCcccc---
Q 038407 162 TNLRRLQLDGNHFREIL-----ESLSKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEGPIPMEF--- 229 (528)
Q Consensus 162 ~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l--- 229 (528)
+.|+.+.+++|.|..-. ..+..+++|+.||+.+|.++.. +...+..+++|++|++++|.+......+|
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 55555555555543211 1445555555555555555421 22234445555555555555543222111
Q ss_pred --cCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCC
Q 038407 230 --CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILS 294 (528)
Q Consensus 230 --~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 294 (528)
...++|+.|.+.+|.|+..... .+...+...+.|..|++++|++.
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~--------------------~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAAL--------------------ALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHH--------------------HHHHHHhcchhhHHhcCCccccc
Confidence 1234555555555555432111 22234555788999999999883
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=4.7e-12 Score=112.46 Aligned_cols=85 Identities=29% Similarity=0.302 Sum_probs=50.9
Q ss_pred cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccC-ccccccCCCCCEE
Q 038407 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI-PLQLVELNTLAVF 434 (528)
Q Consensus 356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 434 (528)
+++|+.||||+|.++ .+..+-..+-+++.|+|++|.+... +.++.+-+|..||+++|+|.... -..++++|-|+++
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 445666666666665 3344445566667777777766632 34556666667777777665321 1245566666666
Q ss_pred EccCCCCcc
Q 038407 435 NVAHNNLSG 443 (528)
Q Consensus 435 ~ls~N~l~~ 443 (528)
.+.+|++.+
T Consensus 405 ~L~~NPl~~ 413 (490)
T KOG1259|consen 405 RLTGNPLAG 413 (490)
T ss_pred hhcCCCccc
Confidence 666666663
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.17 E-value=3.8e-12 Score=113.05 Aligned_cols=129 Identities=29% Similarity=0.328 Sum_probs=83.8
Q ss_pred CCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEE
Q 038407 89 PSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQ 168 (528)
Q Consensus 89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 168 (528)
..|++++|++|.|+ .+..+.+-.+.++.|++++|.+. .+.. + ..+++|+.||+++|.++. +..+-..+.++++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-L-a~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-L-AELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-h-hhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence 35677777777776 44556666677777777777776 4444 2 246777777777777663 233334666777777
Q ss_pred ccCCcCCccCcccCCCCCCCEEEccCCccCcc-CCccccCCCCCCeeecCCceeec
Q 038407 169 LDGNHFREILESLSKCSSLEGLYLSDNNLSGK-IPRWLGNLSMLQHIILPENHFEG 223 (528)
Q Consensus 169 l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~ 223 (528)
+++|.+..+ ..+..+.+|..||+++|+|... -...++++|.|+++.|.+|.+.+
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 777776654 2455666777777777776532 12356677777777777777763
No 36
>PLN03150 hypothetical protein; Provisional
Probab=99.08 E-value=2.5e-10 Score=119.07 Aligned_cols=91 Identities=36% Similarity=0.617 Sum_probs=82.1
Q ss_pred cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccC-CCCCEE
Q 038407 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVEL-NTLAVF 434 (528)
Q Consensus 356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L 434 (528)
+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.++.+++|+.|+|++|++++.+|..+..+ .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 3489999999999999999999999999999999999999999999999999999999999999999988764 467899
Q ss_pred EccCCCCccCCC
Q 038407 435 NVAHNNLSGKIP 446 (528)
Q Consensus 435 ~ls~N~l~~~~p 446 (528)
++.+|...+-.|
T Consensus 521 ~~~~N~~lc~~p 532 (623)
T PLN03150 521 NFTDNAGLCGIP 532 (623)
T ss_pred EecCCccccCCC
Confidence 999998654333
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=7.1e-11 Score=82.81 Aligned_cols=61 Identities=38% Similarity=0.574 Sum_probs=41.1
Q ss_pred ccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCC
Q 038407 381 TRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNL 441 (528)
Q Consensus 381 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l 441 (528)
++|++|++++|+++...++.|.++++|++|++++|+++.+.|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566667777766666556666677777777777777666666667777777777776654
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=3.8e-10 Score=120.29 Aligned_cols=106 Identities=24% Similarity=0.227 Sum_probs=54.9
Q ss_pred CCCEEEccCCcC-cccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCcee
Q 038407 16 DLEFVRLSHLNL-NGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYF 94 (528)
Q Consensus 16 ~L~~L~Ls~~~~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L 94 (528)
+|++|-+.+|.. ...++..+|..++.|+.|||++|.--+.+|..++.+.+|++|+++++.+. .+|..+.+ +..|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~-Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGN-LKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHH-HHhhhee
Confidence 455555555531 12444444555555555555555444455555555555555555555555 55555555 4555555
Q ss_pred eccCCcCcccCCccccCCCCCCEEEccCC
Q 038407 95 NISMNAFDSSIPTSFGNMNFLISLDLSNN 123 (528)
Q Consensus 95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 123 (528)
++..+.-...+|.....+++|++|.+...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 55554433333444444555555555443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=2.1e-10 Score=80.39 Aligned_cols=61 Identities=49% Similarity=0.650 Sum_probs=57.5
Q ss_pred CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcC
Q 038407 357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417 (528)
Q Consensus 357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 417 (528)
|+|++|++++|++....+..|.++++|++|++++|+++...++.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4699999999999987778999999999999999999999999999999999999999986
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=1e-10 Score=116.76 Aligned_cols=86 Identities=26% Similarity=0.259 Sum_probs=55.8
Q ss_pred ccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCccc---Cccc-cccCCCCCEE
Q 038407 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGK---IPLQ-LVELNTLAVF 434 (528)
Q Consensus 359 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-~~~l~~L~~L 434 (528)
|+.+++++|.+. ..+..+..+..+..|++.+|++... ..+...+.+..+....|++... .... ....+.++.+
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 677777777776 3335566677788888888877743 3355667777777777776521 1111 4455677788
Q ss_pred EccCCCCccCCCC
Q 038407 435 NVAHNNLSGKIPE 447 (528)
Q Consensus 435 ~ls~N~l~~~~p~ 447 (528)
.+.+|.+....+.
T Consensus 311 ~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 311 TLELNPIRKISSL 323 (414)
T ss_pred ccccCcccccccc
Confidence 8888877665553
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.95 E-value=6e-11 Score=118.37 Aligned_cols=264 Identities=27% Similarity=0.274 Sum_probs=164.1
Q ss_pred CCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEcc
Q 038407 114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLS 193 (528)
Q Consensus 114 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~ 193 (528)
.++.++..++... ..... ...+..++.+.+..|.+.. ....+..+++|+.|++.+|.+..+...+..+++|++|+++
T Consensus 50 ~~~~~~~~~~~~~-~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 50 DLEEIDLIFNLDG-SDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLS 126 (414)
T ss_pred hhhhhcchhcccc-chhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecc
Confidence 3455555555433 22111 1235566677777777663 2334566777778888888777776556677777777777
Q ss_pred CCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccC
Q 038407 194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV 273 (528)
Q Consensus 194 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~ 273 (528)
+|.|+.. ..+..++.|+.|++++|.|+.. ..+..++.|+.+++++|.+..+...
T Consensus 127 ~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~---------------------- 180 (414)
T KOG0531|consen 127 FNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND---------------------- 180 (414)
T ss_pred ccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhh----------------------
Confidence 7777643 2345566677777777777633 3345567777777777776644211
Q ss_pred cccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccc
Q 038407 274 PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG 353 (528)
Q Consensus 274 ~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (528)
. ...+.+++.+++.+|.+...-. +..
T Consensus 181 -~-~~~~~~l~~l~l~~n~i~~i~~--~~~-------------------------------------------------- 206 (414)
T KOG0531|consen 181 -E-LSELISLEELDLGGNSIREIEG--LDL-------------------------------------------------- 206 (414)
T ss_pred -h-hhhccchHHHhccCCchhcccc--hHH--------------------------------------------------
Confidence 1 3567777888888887652111 000
Q ss_pred cccCcccEEECCCCcCccCCChhhhccc--cCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCC
Q 038407 354 RVISYLSELDLSYNKLIGQIPPQIGNLT--RIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTL 431 (528)
Q Consensus 354 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 431 (528)
...+..+++..|.+....+ +..+. .|+.+++++|.+. ..+..+..++.+..|++++|++... ..+...+.+
T Consensus 207 --~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~ 279 (414)
T KOG0531|consen 207 --LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKL 279 (414)
T ss_pred --HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchH
Confidence 1134445777777763322 22233 3899999999998 4446678889999999999999743 235566777
Q ss_pred CEEEccCCCCccC---CCCC-CcccCCCCcCcccCCCCCC
Q 038407 432 AVFNVAHNNLSGK---IPEW-TAQFATFNESSYEGNPFLC 467 (528)
Q Consensus 432 ~~L~ls~N~l~~~---~p~~-~~~~~~l~~l~l~~Np~~c 467 (528)
..+....|++... .... ....+++....+.+||..-
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 280 SELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred HHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 7888888887632 1111 3355677777788887654
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=6.5e-10 Score=118.56 Aligned_cols=204 Identities=22% Similarity=0.183 Sum_probs=136.5
Q ss_pred CCCceeeccCCcCcccCCccccCCCCCCEEEccCCc--ccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCE
Q 038407 89 PSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ--LTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRR 166 (528)
Q Consensus 89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 166 (528)
...+...+-+|.+. ..+.... .++|++|-+..|. +. .++..+|..++.|++||+++|.--+.+|..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 46677777777665 3333332 3478888888886 55 788888888999999999988766678888889999999
Q ss_pred EEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCcee--eccCcccccCCCCCCEEEcccCc
Q 038407 167 LQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF--EGPIPMEFCQLDSLQILNISDNN 244 (528)
Q Consensus 167 L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i--~~~~~~~l~~l~~L~~L~L~~n~ 244 (528)
|+++++.+..+|..+..+..|.+|++..+.....++.....+++|++|.+..-.. +...-..+..+++|+.+......
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 9999999999999999999999999998866556677777799999998866542 22223344555666666554433
Q ss_pred ccccccchhhhcccc--ceeeeccCcccccCcccccCCCCCCEEEccCCcCCcC
Q 038407 245 ISGIYHHASILSLSK--DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGH 296 (528)
Q Consensus 245 l~~~~~~~~~~~~~~--~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 296 (528)
............+.. ..+.+.++... ..+..+..+.+|+.|.+.++.+...
T Consensus 680 ~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 680 VLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred hHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchh
Confidence 210011001111111 22232222222 3445677889999999999987643
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.3e-10 Score=103.43 Aligned_cols=181 Identities=20% Similarity=0.116 Sum_probs=108.9
Q ss_pred CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCc-CccccChhhhhcCCCCce
Q 038407 15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN-LQGHIPVKIGDFLPSLKY 93 (528)
Q Consensus 15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~ 93 (528)
++|++||||+..++..--..+++.|.+|+.|.|.++.+.+.+...+..-.+|+.|+++.+. ++.....-+...++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3688888888877654444557788888888888888887777777777888888888753 443223344555778888
Q ss_pred eeccCCcCcccCCcc-ccC-CCCCCEEEccCCccc--ccCChhhhhCCCCCCEEEccCCc-CcccCCccCCCCCCCCEEE
Q 038407 94 FNISMNAFDSSIPTS-FGN-MNFLISLDLSNNQLT--GEIPEHLAMGCVDLEYLLLSNNS-LEGHLFPRNFNLTNLRRLQ 168 (528)
Q Consensus 94 L~L~~n~i~~~~~~~-~~~-l~~L~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 168 (528)
|++++|.+....-.. +.+ -++|+.|+++++.-. ..--..+...+++|.+||++.|. ++......+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 888888765322111 111 246777777765421 11112233457777777777653 3333334455666677777
Q ss_pred ccCCcCCccC--cccCCCCCCCEEEccCC
Q 038407 169 LDGNHFREIL--ESLSKCSSLEGLYLSDN 195 (528)
Q Consensus 169 l~~n~~~~~~--~~~~~l~~L~~L~L~~n 195 (528)
++.|....-. -.+...|.|.+|++.++
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 7666432110 14555666666666554
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.62 E-value=1.2e-09 Score=108.43 Aligned_cols=124 Identities=28% Similarity=0.220 Sum_probs=53.0
Q ss_pred CCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCc-cccCCCCCCeeecCC
Q 038407 140 LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPR-WLGNLSMLQHIILPE 218 (528)
Q Consensus 140 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~ 218 (528)
|.+.+.++|++.. +...+.-++.++.|+|++|+++... .+..++.|++|||++|.+. .+|. ....++ |..|.+++
T Consensus 166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence 3344444444431 2233333444555555555544443 3444455555555555444 2221 111222 45555555
Q ss_pred ceeeccCcccccCCCCCCEEEcccCcccccccchhhhcccc-ceeeeccCcc
Q 038407 219 NHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSK-DQLVLAHNNF 269 (528)
Q Consensus 219 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~L~L~~n~l 269 (528)
|.++.. ..+.++.+|+.||+++|-+.+.....+++.+.. +.|+|.+|.+
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 544421 223444555555555555444433333333332 4445555443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=5.3e-10 Score=110.91 Aligned_cols=179 Identities=31% Similarity=0.368 Sum_probs=119.8
Q ss_pred chhhhCCCCCCEEEccCCcCcccCChhhhhcC-CCCCEEEccCCCCccc---cCc---Ccc---CCCCCCEEEccCCcCc
Q 038407 8 PNFFYHQHDLEFVRLSHLNLNGEFPNWLLENN-TKLESNFLLNNSLPGL---FLL---PIH---CHKSLMLLDVSNNNLQ 77 (528)
Q Consensus 8 ~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l-~~L~~L~L~~n~~~~~---~~~---~~~---~~~~L~~L~ls~n~l~ 77 (528)
|-.+..+++|++|.|.+|+++. ...+ ..+ ..|+.| +.+|.++.. +.. .+. ..-.|...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL-~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGL-QELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhh-HHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 4566777888888888887752 1111 111 123333 222322210 000 011 1245777888888887
Q ss_pred cccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCcc
Q 038407 78 GHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPR 157 (528)
Q Consensus 78 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 157 (528)
.+. ...+.++.++.|+|++|+++.. +.+..+++|++|||+.|.+. .+|..-..++. |+.|.+++|.++. ...
T Consensus 178 -~mD-~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~g 249 (1096)
T KOG1859|consen 178 -LMD-ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRG 249 (1096)
T ss_pred -hHH-HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh--hhh
Confidence 443 4445588999999999998754 37888899999999999988 78775544555 8999999998875 456
Q ss_pred CCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEEccCCccC
Q 038407 158 NFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLYLSDNNLS 198 (528)
Q Consensus 158 ~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~L~~n~l~ 198 (528)
+.++.+|+.||+++|-+.+... .+..+..|+.|.|.+|++.
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6788889999999998765533 3456677888888888874
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.7e-09 Score=95.14 Aligned_cols=178 Identities=24% Similarity=0.206 Sum_probs=118.8
Q ss_pred CCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCc-ccccCChhhhhCCCCCCE
Q 038407 64 KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQ-LTGEIPEHLAMGCVDLEY 142 (528)
Q Consensus 64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~ 142 (528)
..|++||||+..++..--..+...+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++..-...++.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588888888877744334444557788888888888887777777888888888888764 443333455667888888
Q ss_pred EEccCCcCcccCCccCC--CCCCCCEEEccCCcCCc----cCcccCCCCCCCEEEccCCc-cCccCCccccCCCCCCeee
Q 038407 143 LLLSNNSLEGHLFPRNF--NLTNLRRLQLDGNHFRE----ILESLSKCSSLEGLYLSDNN-LSGKIPRWLGNLSMLQHII 215 (528)
Q Consensus 143 L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~----~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~ 215 (528)
|+++-|.+......... --++|+.|++++++-.- +..-...+|+|..|||++|. ++......|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 88888876542211111 23568888888875321 11134568888888888874 3333334566788888888
Q ss_pred cCCceeeccCcc---cccCCCCCCEEEcccC
Q 038407 216 LPENHFEGPIPM---EFCQLDSLQILNISDN 243 (528)
Q Consensus 216 L~~n~i~~~~~~---~l~~l~~L~~L~L~~n 243 (528)
++.|-. +.|. .+...+.|.+|++.++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 887743 3343 4566778888887665
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.51 E-value=2.8e-08 Score=87.58 Aligned_cols=185 Identities=21% Similarity=0.189 Sum_probs=88.8
Q ss_pred hCCCCCCEEEccCCcCcccCChhh---hhcCCCCCEEEccCCCCccc----c-------CcCccCCCCCCEEEccCCcCc
Q 038407 12 YHQHDLEFVRLSHLNLNGEFPNWL---LENNTKLESNFLLNNSLPGL----F-------LLPIHCHKSLMLLDVSNNNLQ 77 (528)
Q Consensus 12 ~~~~~L~~L~Ls~~~~~~~~~~~~---~~~l~~L~~L~L~~n~~~~~----~-------~~~~~~~~~L~~L~ls~n~l~ 77 (528)
..+..+..++||+|-|......++ +.+-++|+..+++.- +++. + ..++-+|++|+.++||.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 446777777777777764443333 233455666555542 1221 1 123456677777777777665
Q ss_pred cccChhhhh---cCCCCceeeccCCcCcccCCcc-------------ccCCCCCCEEEccCCcccccCChhh----hhCC
Q 038407 78 GHIPVKIGD---FLPSLKYFNISMNAFDSSIPTS-------------FGNMNFLISLDLSNNQLTGEIPEHL----AMGC 137 (528)
Q Consensus 78 ~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l 137 (528)
...|..+.. .-+.|++|.+++|.+..+--.- ..+-+.|++.....|++. ..+... +..-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhh
Confidence 555443332 1345666666666553211111 122345666666666554 333211 1112
Q ss_pred CCCCEEEccCCcCcccC-----CccCCCCCCCCEEEccCCcCCccCc-----ccCCCCCCCEEEccCCccC
Q 038407 138 VDLEYLLLSNNSLEGHL-----FPRNFNLTNLRRLQLDGNHFREILE-----SLSKCSSLEGLYLSDNNLS 198 (528)
Q Consensus 138 ~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~l~~L~~L~L~~n~l~ 198 (528)
..|+++.+..|.|.... ...++.+.+|+.||++.|.++.... .++.++.|+.|.+..|-++
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 34555555555554210 0112234555555555555543221 3344444555555555443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=5.4e-08 Score=86.98 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=28.4
Q ss_pred CCCCEEEccCCcCCccCc--ccCCCCCCCEEEccCCccCcc-CCccccCCCCCCeeecCCceee
Q 038407 162 TNLRRLQLDGNHFREILE--SLSKCSSLEGLYLSDNNLSGK-IPRWLGNLSMLQHIILPENHFE 222 (528)
Q Consensus 162 ~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~ 222 (528)
+++..+.+..|.+..... .+...+.+..|+|+.+++... .-+.+.++++|+.|.++++.+.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 444444444444443322 334444455555555555322 1133445555555555555543
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.32 E-value=3.9e-08 Score=77.57 Aligned_cols=114 Identities=22% Similarity=0.300 Sum_probs=69.5
Q ss_pred CCCEEEccCCcCcccCChhh--hhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCce
Q 038407 16 DLEFVRLSHLNLNGEFPNWL--LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKY 93 (528)
Q Consensus 16 ~L~~L~Ls~~~~~~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 93 (528)
.+..++|+.|.+. .++... +....+|...+|++|.+....+..-..++.++.|++++|.++ .+|..+.. ++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhh
Confidence 4556677777653 344332 344455666677777666433333334456677777777776 66766544 667777
Q ss_pred eeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhh
Q 038407 94 FNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLA 134 (528)
Q Consensus 94 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 134 (528)
|+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..++
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF 143 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence 777777765 45566666667777777777666 6665544
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=3.7e-07 Score=81.75 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=44.8
Q ss_pred CCCCCEEEccCCcCcccC-CccCCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEEccCCccCc
Q 038407 137 CVDLEYLLLSNNSLEGHL-FPRNFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLYLSDNNLSG 199 (528)
Q Consensus 137 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~L~~n~l~~ 199 (528)
.+++..+-+..|.+.... -.....++.+-.|+++.+++..... .+..++.|..|.++++++.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 356666666666654321 1223356677789999999987654 78889999999999998864
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.28 E-value=6.3e-08 Score=76.45 Aligned_cols=109 Identities=20% Similarity=0.335 Sum_probs=80.1
Q ss_pred cccEEECCCCcCccCCChhhh-ccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407 358 YLSELDLSYNKLIGQIPPQIG-NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV 436 (528)
Q Consensus 358 ~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 436 (528)
.|+..+|++|.+. ..|..|. .++.++.|+|++|.|+ .+|..++.++.|+.|+++.|.+. ..|..+..+.+|..|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 4777899999988 4555554 4568899999999998 66777999999999999999998 66777777888889998
Q ss_pred cCCCCccCCCCCCcccCCC-CcCcccCCCCCCCCCC
Q 038407 437 AHNNLSGKIPEWTAQFATF-NESSYEGNPFLCGLPL 471 (528)
Q Consensus 437 s~N~l~~~~p~~~~~~~~l-~~l~l~~Np~~c~~~l 471 (528)
.+|.+. .+|..+ -.+++ -...+.++||.-+|+.
T Consensus 131 ~~na~~-eid~dl-~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 131 PENARA-EIDVDL-FYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred CCCccc-cCcHHH-hccccHHHHHhcCCcccccCcc
Confidence 888877 455442 22222 2345577777765554
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.20 E-value=2.8e-06 Score=72.04 Aligned_cols=83 Identities=29% Similarity=0.276 Sum_probs=39.0
Q ss_pred CCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEEccCCccCcc---CCccccCCCCC
Q 038407 137 CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLYLSDNNLSGK---IPRWLGNLSML 211 (528)
Q Consensus 137 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L 211 (528)
++.|.+|.+++|+|+...+.-..-+++|+.|.+.+|.+..+.+ .+..||.|++|.+-+|+++.. -...+..+|+|
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL 142 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc
Confidence 3344444444444443222222233444444444444443332 345556666666666655421 12245566677
Q ss_pred CeeecCCc
Q 038407 212 QHIILPEN 219 (528)
Q Consensus 212 ~~L~L~~n 219 (528)
+.||+..-
T Consensus 143 ~~LDF~kV 150 (233)
T KOG1644|consen 143 RTLDFQKV 150 (233)
T ss_pred eEeehhhh
Confidence 77766643
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.15 E-value=1e-06 Score=78.01 Aligned_cols=211 Identities=23% Similarity=0.190 Sum_probs=135.2
Q ss_pred hcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCcC---ccccChhhh------hcCCCCceeeccCCcCcc
Q 038407 37 ENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNNL---QGHIPVKIG------DFLPSLKYFNISMNAFDS 103 (528)
Q Consensus 37 ~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l---~~~~~~~~~------~~l~~L~~L~L~~n~i~~ 103 (528)
.-+..+..++||+|.+... +...+.+-++|+..+++.-.. ...++..+. -.||.|+..+||.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 4578899999999998654 334456678899998886432 223332211 127899999999999876
Q ss_pred cCCcc----ccCCCCCCEEEccCCcccc----cCChhhh--------hCCCCCCEEEccCCcCcccCC----ccCCCCCC
Q 038407 104 SIPTS----FGNMNFLISLDLSNNQLTG----EIPEHLA--------MGCVDLEYLLLSNNSLEGHLF----PRNFNLTN 163 (528)
Q Consensus 104 ~~~~~----~~~l~~L~~L~l~~n~l~~----~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~ 163 (528)
..|.. +..-..|++|.+++|.+.. .+...+| ..-|.|++.....|++..-.. ..+..-.+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 66643 4566789999999998751 1222221 134678888888888764111 11223357
Q ss_pred CCEEEccCCcCCccC------cccCCCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeeccCccc----c
Q 038407 164 LRRLQLDGNHFREIL------ESLSKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEGPIPME----F 229 (528)
Q Consensus 164 L~~L~l~~n~~~~~~------~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~----l 229 (528)
|+.+.+.+|.|..-. ..+..+.+|+.||+..|.++-. ....+..++.|++|.+.+|-++.....+ |
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 888888888776321 1345678888888888877532 2334455667888888888776432221 1
Q ss_pred c--CCCCCCEEEcccCcccc
Q 038407 230 C--QLDSLQILNISDNNISG 247 (528)
Q Consensus 230 ~--~l~~L~~L~L~~n~l~~ 247 (528)
. ..++|+.|...+|.+.+
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhcCCCccccccchhhhcC
Confidence 1 24677777777776653
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.14 E-value=4e-06 Score=71.09 Aligned_cols=102 Identities=23% Similarity=0.244 Sum_probs=52.5
Q ss_pred CCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccC-CCCCCCEEEccCCccCccC-CccccCCCCCCeeec
Q 038407 139 DLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLS-KCSSLEGLYLSDNNLSGKI-PRWLGNLSMLQHIIL 216 (528)
Q Consensus 139 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L 216 (528)
+...+|+++|.+.. .+.|..++.|.+|.++.|+|+.+.+.+. -+++|+.|.+.+|.+.... -+-+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44555555555542 3445555666666666666666555333 2345666666666554210 112345556666666
Q ss_pred CCceeecc---CcccccCCCCCCEEEccc
Q 038407 217 PENHFEGP---IPMEFCQLDSLQILNISD 242 (528)
Q Consensus 217 ~~n~i~~~---~~~~l~~l~~L~~L~L~~ 242 (528)
-+|.++.. --..+..+++|+.||..+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 66655422 112344556666666554
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=2.4e-06 Score=54.58 Aligned_cols=36 Identities=33% Similarity=0.617 Sum_probs=16.8
Q ss_pred CCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCc
Q 038407 406 HIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442 (528)
Q Consensus 406 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 442 (528)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555 23334455555555555555544
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=2.5e-06 Score=54.46 Aligned_cols=37 Identities=35% Similarity=0.649 Sum_probs=23.1
Q ss_pred ccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCc
Q 038407 381 TRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418 (528)
Q Consensus 381 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 418 (528)
++|++|++++|+|+. +|..++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 356677777777773 4445667777777777777766
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.00 E-value=1.8e-05 Score=65.02 Aligned_cols=123 Identities=26% Similarity=0.302 Sum_probs=51.0
Q ss_pred hhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcC
Q 038407 9 NFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFL 88 (528)
Q Consensus 9 ~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l 88 (528)
.+|.++++|+.+.+.. .+. .++...|.++++|+.+.+.++ +......+|.++++++.+.+.+ .+. .++...+..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC 80 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence 3556666666666653 333 455555666666666666553 4444445566665666666654 333 3444444445
Q ss_pred CCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCC
Q 038407 89 PSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDL 140 (528)
Q Consensus 89 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 140 (528)
++++.+.+..+ +..+....|.+. +|+.+.+.. .+. .++...|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 56666666543 444444555554 566666554 333 4555555555444
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.97 E-value=3.9e-06 Score=87.79 Aligned_cols=133 Identities=26% Similarity=0.337 Sum_probs=90.7
Q ss_pred CCCCEEEccCCc-CccccChhhhhcCCCCceeeccCCcCccc-CCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC
Q 038407 64 KSLMLLDVSNNN-LQGHIPVKIGDFLPSLKYFNISMNAFDSS-IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE 141 (528)
Q Consensus 64 ~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 141 (528)
.+|++||+++.. +....+..++..+|+|++|.+.+-.+... .-....++++|..||+++.+++ .+ .++ +.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHH-hccccHH
Confidence 678888888864 33345677788889999998887655421 2234457888888898888887 55 334 4688888
Q ss_pred EEEccCCcCcc-cCCccCCCCCCCCEEEccCCcCCccCc-------ccCCCCCCCEEEccCCccCc
Q 038407 142 YLLLSNNSLEG-HLFPRNFNLTNLRRLQLDGNHFREILE-------SLSKCSSLEGLYLSDNNLSG 199 (528)
Q Consensus 142 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~-------~~~~l~~L~~L~L~~n~l~~ 199 (528)
+|.+.+=.+.. .....++++++|+.||+|.......+. .-..+|+|+.||.++..+..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 88887766653 233456788888888888776554331 22346777777777766654
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.91 E-value=2.2e-05 Score=64.48 Aligned_cols=110 Identities=23% Similarity=0.211 Sum_probs=58.3
Q ss_pred CChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCcccc
Q 038407 31 FPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG 110 (528)
Q Consensus 31 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 110 (528)
++...|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +. .++...+..+++++.+.+.. .+.......|.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccc
Confidence 4555677777888888764 455555667777777888877764 55 56666666666777777755 44445556666
Q ss_pred CCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccC
Q 038407 111 NMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSN 147 (528)
Q Consensus 111 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 147 (528)
.+++|+.+++..+ +. .++...+.++ .++.+.+..
T Consensus 79 ~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 6777777777554 44 5555555554 666666654
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=1.7e-05 Score=83.13 Aligned_cols=134 Identities=18% Similarity=0.172 Sum_probs=70.4
Q ss_pred CCCCEEEccCCCCccc-cCcCc-cCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCE
Q 038407 40 TKLESNFLLNNSLPGL-FLLPI-HCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLIS 117 (528)
Q Consensus 40 ~~L~~L~L~~n~~~~~-~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 117 (528)
.+|++|++++...-.. -+..+ .-+|.|+.|.+++-.+...--..++..+|+|+.||+|+..++.. ..+.++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4566666666432211 11111 23566666666665543211123444466677777777666533 45566666666
Q ss_pred EEccCCcccc-cCChhhhhCCCCCCEEEccCCcCcccC------CccCCCCCCCCEEEccCCcCCc
Q 038407 118 LDLSNNQLTG-EIPEHLAMGCVDLEYLLLSNNSLEGHL------FPRNFNLTNLRRLQLDGNHFRE 176 (528)
Q Consensus 118 L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~~~~ 176 (528)
|.+.+=.+.. ..-..+| ++++|+.||+|..+..... ...-..+++|+.||.+++.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 6666555542 1112344 5677777777765433211 1122346777777777776653
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=7.3e-05 Score=72.19 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=38.3
Q ss_pred cCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCC-cCccccChhhhhcCCCCceeeccCC-cCcccCCccccCCCCC
Q 038407 38 NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNN-NLQGHIPVKIGDFLPSLKYFNISMN-AFDSSIPTSFGNMNFL 115 (528)
Q Consensus 38 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L 115 (528)
.+.++++|++++|.++.. |. -..+|++|.++++ .++ .+|..+ .++|++|++++| .+. .+| ..|
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLt-sLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLT-TLPGSI---PEGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcc-cCCchh---hhhhhheEccCccccc-ccc------ccc
Confidence 366777777777765533 21 1235777777653 333 455433 246677777766 332 233 235
Q ss_pred CEEEccCCc
Q 038407 116 ISLDLSNNQ 124 (528)
Q Consensus 116 ~~L~l~~n~ 124 (528)
+.|++..+.
T Consensus 115 e~L~L~~n~ 123 (426)
T PRK15386 115 RSLEIKGSA 123 (426)
T ss_pred ceEEeCCCC
Confidence 556665544
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=0.00015 Score=70.03 Aligned_cols=137 Identities=20% Similarity=0.175 Sum_probs=90.2
Q ss_pred hhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCC-cCccccChhhhhcCC
Q 038407 11 FYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNN-NLQGHIPVKIGDFLP 89 (528)
Q Consensus 11 l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~~l~ 89 (528)
+..++++++|++++|.++ .+|. + -++|++|.+++|.--..+|..+ .++|++|++++| .+. .+| +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------E 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-------c
Confidence 445789999999999887 7773 1 3579999999876544555444 368999999998 554 444 4
Q ss_pred CCceeeccCCcCcccCCccccCC-CCCCEEEccCCc-cc-ccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCE
Q 038407 90 SLKYFNISMNAFDSSIPTSFGNM-NFLISLDLSNNQ-LT-GEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRR 166 (528)
Q Consensus 90 ~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~l~~n~-l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 166 (528)
+|+.|+++.+.... +..+ ++|+.|.+.+++ .. ..+|..+ .++|++|++++|.... .|..+. .+|+.
T Consensus 113 sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L---PsSLk~L~Is~c~~i~-LP~~LP--~SLk~ 181 (426)
T PRK15386 113 SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI---SPSLKTLSLTGCSNII-LPEKLP--ESLQS 181 (426)
T ss_pred ccceEEeCCCCCcc-----cccCcchHhheecccccccccccccccc---CCcccEEEecCCCccc-Cccccc--ccCcE
Confidence 68888887765431 2223 357777775432 11 1222111 2579999999988653 333332 58999
Q ss_pred EEccCCc
Q 038407 167 LQLDGNH 173 (528)
Q Consensus 167 L~l~~n~ 173 (528)
|.++.+.
T Consensus 182 L~ls~n~ 188 (426)
T PRK15386 182 ITLHIEQ 188 (426)
T ss_pred EEecccc
Confidence 9998764
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.66 E-value=1.3e-06 Score=82.13 Aligned_cols=275 Identities=18% Similarity=0.106 Sum_probs=156.4
Q ss_pred CCCCEEEccCCcCccc-CChhhhhcCCCCCEEEccCCCC-ccccCcCc-cCCCCCCEEEccCC-cCccccChhhhhcCCC
Q 038407 15 HDLEFVRLSHLNLNGE-FPNWLLENNTKLESNFLLNNSL-PGLFLLPI-HCHKSLMLLDVSNN-NLQGHIPVKIGDFLPS 90 (528)
Q Consensus 15 ~~L~~L~Ls~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~~-~~~~~L~~L~ls~n-~l~~~~~~~~~~~l~~ 90 (528)
..|+.|.+.++.-.+. -...+-.+++++++|++.+|.. ++..-..+ ..+++|++|++..+ .++...-..+...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4689999999865432 2233457899999999998863 33322223 35789999999984 4554444456777999
Q ss_pred CceeeccCCc-Cccc-CCccccCCCCCCEEEccCCcccccCChh----hhhCCCCCCEEEccCCc-Cccc-CCccCCCCC
Q 038407 91 LKYFNISMNA-FDSS-IPTSFGNMNFLISLDLSNNQLTGEIPEH----LAMGCVDLEYLLLSNNS-LEGH-LFPRNFNLT 162 (528)
Q Consensus 91 L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~ 162 (528)
|++|++++|. |++. +...+.+...++.+.+.+|. ..+.. ....+..+.++++.+|. +++. +...-..+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 9999999874 3321 11223455566666666543 11211 11234445566655552 3321 111123567
Q ss_pred CCCEEEccCCcCCccCc---ccCCCCCCCEEEccCCcc-CccCCccc-cCCCCCCeeecCCceeecc--CcccccCCCCC
Q 038407 163 NLRRLQLDGNHFREILE---SLSKCSSLEGLYLSDNNL-SGKIPRWL-GNLSMLQHIILPENHFEGP--IPMEFCQLDSL 235 (528)
Q Consensus 163 ~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L 235 (528)
.|+.|+.+++....-.. --.++++|+.|.++.++. ++.--..+ .+++.|+.+++..+..... +...-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 77888777764421111 224567888888887753 22111111 3467788888877654311 22223467778
Q ss_pred CEEEcccCcccccc---c--chhhhccccceeeeccCccc-ccCcccccCCCCCCEEEccCCc
Q 038407 236 QILNISDNNISGIY---H--HASILSLSKDQLVLAHNNFE-GEVPIQLCQLNKLQLIDLSNNI 292 (528)
Q Consensus 236 ~~L~L~~n~l~~~~---~--~~~~~~~~~~~L~L~~n~l~-~~~~~~l~~l~~L~~L~ls~n~ 292 (528)
+.+.++++..-... . ......-.+..+.+++++.. ....+.+..+++|+.+++-+++
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 88888876432111 0 00111122366677777543 3344567778899998887765
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.34 E-value=8.7e-05 Score=65.99 Aligned_cols=109 Identities=26% Similarity=0.273 Sum_probs=74.4
Q ss_pred hhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCC--cCccccChhhhhcCCCCceeeccCCcCccc-CCccccCC
Q 038407 36 LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNN--NLQGHIPVKIGDFLPSLKYFNISMNAFDSS-IPTSFGNM 112 (528)
Q Consensus 36 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n--~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l 112 (528)
......|+.+++.+..++.. ..+-.+++|+.|.+|.| ++.+.++.-+-. +|+|++|++++|+|... --..+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhh
Confidence 45567777777777776643 23446788999999999 666566555555 68999999999998631 11234567
Q ss_pred CCCCEEEccCCcccccCC---hhhhhCCCCCCEEEccCC
Q 038407 113 NFLISLDLSNNQLTGEIP---EHLAMGCVDLEYLLLSNN 148 (528)
Q Consensus 113 ~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n 148 (528)
.+|..|++.+|..+ .+. ..+|.-+++|++|+-...
T Consensus 116 ~nL~~Ldl~n~~~~-~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVT-NLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cchhhhhcccCCcc-ccccHHHHHHHHhhhhcccccccc
Confidence 78889999998776 333 245555778888776543
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.28 E-value=1.4e-05 Score=75.19 Aligned_cols=277 Identities=17% Similarity=0.119 Sum_probs=149.4
Q ss_pred hhhCCCCCCEEEccCCc-CcccCChhhhhcCCCCCEEEccCCC-CccccCc-CccCCCCCCEEEccCCc-CccccChhhh
Q 038407 10 FFYHQHDLEFVRLSHLN-LNGEFPNWLLENNTKLESNFLLNNS-LPGLFLL-PIHCHKSLMLLDVSNNN-LQGHIPVKIG 85 (528)
Q Consensus 10 ~l~~~~~L~~L~Ls~~~-~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~-~~~~~~~L~~L~ls~n~-l~~~~~~~~~ 85 (528)
+-.++++++.|++.+|. +++..-..+-..|++|+++++..|. ++...-. -..++++|++|+++.+. +++.-...+.
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 44788999999998885 4433333445678999999998864 3433222 34578999999999774 4443333455
Q ss_pred hcCCCCceeeccCCcCcccCCccc----cCCCCCCEEEccCCc-ccccCChhhhhCCCCCCEEEccCCcC-cccCCccC-
Q 038407 86 DFLPSLKYFNISMNAFDSSIPTSF----GNMNFLISLDLSNNQ-LTGEIPEHLAMGCVDLEYLLLSNNSL-EGHLFPRN- 158 (528)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~- 158 (528)
+.++.++.+.+.+|.-. .-..+ +....+..+++.++. ++..--..+..++..|+.|+.+++.- +......+
T Consensus 239 rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg 316 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG 316 (483)
T ss_pred ccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence 55667777766665321 11122 233445566655553 22111122334566777887776643 22111222
Q ss_pred CCCCCCCEEEccCCc-CCccCc--ccCCCCCCCEEEccCCccCc--cCCccccCCCCCCeeecCCceee-ccC----ccc
Q 038407 159 FNLTNLRRLQLDGNH-FREILE--SLSKCSSLEGLYLSDNNLSG--KIPRWLGNLSMLQHIILPENHFE-GPI----PME 228 (528)
Q Consensus 159 ~~l~~L~~L~l~~n~-~~~~~~--~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~i~-~~~----~~~ 228 (528)
.+..+|+.|-+.+++ ++..-. --.+++.|+.+++..+.... .+...-.+++.|+.+.++.+... +.. ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 256778888777775 222211 12356777777777764421 11122235677788777766432 211 112
Q ss_pred ccCCCCCCEEEcccCcccccccchhhhc-cccceeeeccCccc--ccCcccccCCCCCCEEEc
Q 038407 229 FCQLDSLQILNISDNNISGIYHHASILS-LSKDQLVLAHNNFE--GEVPIQLCQLNKLQLIDL 288 (528)
Q Consensus 229 l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l 288 (528)
-.++..|+.+.+++++............ ..++.+++.+++-. ..+...-.++|+++...+
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 2455677777777776543222222221 22255666555322 122233445666665543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=1.7e-05 Score=70.71 Aligned_cols=97 Identities=26% Similarity=0.249 Sum_probs=55.8
Q ss_pred CCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEE
Q 038407 114 FLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLY 191 (528)
Q Consensus 114 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~ 191 (528)
+.+.|+..++.+. .| .+...++.|++|.|+-|+|+. ...+..|++|++|+|..|.|.++.. -+.++|+|+.|.
T Consensus 20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCcc-HH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4445555555554 22 233456666666666666664 3445566677777777776666544 456677777777
Q ss_pred ccCCccCccCCc-----cccCCCCCCeee
Q 038407 192 LSDNNLSGKIPR-----WLGNLSMLQHII 215 (528)
Q Consensus 192 L~~n~l~~~~~~-----~l~~l~~L~~L~ 215 (528)
|..|.-.+..+. .+.-+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 777665543322 234455555554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00022 Score=63.53 Aligned_cols=115 Identities=23% Similarity=0.156 Sum_probs=73.4
Q ss_pred ccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCC--cCcccCCccccCCCCCCEEEccCCcccc--cCChhhhh
Q 038407 60 IHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMN--AFDSSIPTSFGNMNFLISLDLSNNQLTG--EIPEHLAM 135 (528)
Q Consensus 60 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~ 135 (528)
...+..|+.|++.+..++ .+. .+-. +|+|++|.++.| ++.+-++-....+++|+++++++|++.. .++. ..
T Consensus 39 ~d~~~~le~ls~~n~glt-t~~-~~P~-Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~ 113 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-TLT-NFPK-LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LK 113 (260)
T ss_pred cccccchhhhhhhcccee-ecc-cCCC-cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hh
Confidence 345567777777777766 221 1222 789999999999 6665555556677999999999998762 2222 13
Q ss_pred CCCCCCEEEccCCcCcccCC---ccCCCCCCCCEEEccCCcCCccCc
Q 038407 136 GCVDLEYLLLSNNSLEGHLF---PRNFNLTNLRRLQLDGNHFREILE 179 (528)
Q Consensus 136 ~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~ 179 (528)
.+.+|..|++.+|..+...- ..|.-+++|++|+-....-...+.
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccccc
Confidence 46778899999887664111 123456778877755444444443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=1.8e-05 Score=70.54 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=67.8
Q ss_pred CCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh-hhhhcCCCCc
Q 038407 14 QHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV-KIGDFLPSLK 92 (528)
Q Consensus 14 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~l~~L~ 92 (528)
+.+.+.|+..+|.+. .|. +...|+.|++|.|+-|+++.. ..+..|++|++|+|..|.|. .+.. .....+|+|+
T Consensus 18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 346778888888876 333 357888888888888888755 45778888888888888876 3322 2223477888
Q ss_pred eeeccCCcCcccCCc-----cccCCCCCCEEE
Q 038407 93 YFNISMNAFDSSIPT-----SFGNMNFLISLD 119 (528)
Q Consensus 93 ~L~L~~n~i~~~~~~-----~~~~l~~L~~L~ 119 (528)
.|.|..|.-.+..+. .+..+++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888877766543332 344566666665
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.94 E-value=9.3e-05 Score=76.08 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=7.9
Q ss_pred CCCCCEEEccCCcC
Q 038407 280 LNKLQLIDLSNNIL 293 (528)
Q Consensus 280 l~~L~~L~ls~n~l 293 (528)
+..++.+++.++..
T Consensus 426 ~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 426 CSNLKDLDLSGCRV 439 (482)
T ss_pred hhccccCCccCccc
Confidence 45566666666543
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.27 E-value=0.0017 Score=66.69 Aligned_cols=209 Identities=22% Similarity=0.099 Sum_probs=109.2
Q ss_pred hCCCCCCEEEccCCcCcccC-ChhhhhcCCCCCEEEccCC-CCcccc----CcCccCCCCCCEEEccCCc-CccccChhh
Q 038407 12 YHQHDLEFVRLSHLNLNGEF-PNWLLENNTKLESNFLLNN-SLPGLF----LLPIHCHKSLMLLDVSNNN-LQGHIPVKI 84 (528)
Q Consensus 12 ~~~~~L~~L~Ls~~~~~~~~-~~~~~~~l~~L~~L~L~~n-~~~~~~----~~~~~~~~~L~~L~ls~n~-l~~~~~~~~ 84 (528)
..++.|+.|.+.++.-.... -..+...++.|+.|+++++ ...... ......+++|+.|+++++. +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34677888888777432221 1233467788888888763 221111 1233456778888888776 553333444
Q ss_pred hhcCCCCceeeccCCc-CcccCC-ccccCCCCCCEEEccCCcccc-c-CChhhhhCCCCCCEEEccCCc----Ccc----
Q 038407 85 GDFLPSLKYFNISMNA-FDSSIP-TSFGNMNFLISLDLSNNQLTG-E-IPEHLAMGCVDLEYLLLSNNS----LEG---- 152 (528)
Q Consensus 85 ~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~~~~l~~L~~L~l~~n~----l~~---- 152 (528)
...+++|++|.+..|. +++..- .....++.|++|+++.+.... . +... ..++++++.|.+.... ++.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~ 343 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLS 343 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHHHHHHH
Confidence 4457788888877666 442211 223356678888887765421 1 2222 2345555554433321 110
Q ss_pred ---------cCCccCCCCCCCCEEEccCCcCCccC--cccCCCCC--------------CCEEEccCCccCcc-CCcccc
Q 038407 153 ---------HLFPRNFNLTNLRRLQLDGNHFREIL--ESLSKCSS--------------LEGLYLSDNNLSGK-IPRWLG 206 (528)
Q Consensus 153 ---------~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~l~~--------------L~~L~L~~n~l~~~-~~~~l~ 206 (528)
........+++++.+.+..+...... ..+.+++. ++.|+++.+..... .-....
T Consensus 344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~ 423 (482)
T KOG1947|consen 344 GLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLA 423 (482)
T ss_pred HhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHh
Confidence 11112336677777777776643332 13344443 47777777654311 111111
Q ss_pred C-CCCCCeeecCCcee
Q 038407 207 N-LSMLQHIILPENHF 221 (528)
Q Consensus 207 ~-l~~L~~L~L~~n~i 221 (528)
. +..++.+++.++..
T Consensus 424 ~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 424 DSCSNLKDLDLSGCRV 439 (482)
T ss_pred hhhhccccCCccCccc
Confidence 1 55667777776654
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.54 E-value=0.0041 Score=32.85 Aligned_cols=11 Identities=64% Similarity=0.676 Sum_probs=4.4
Q ss_pred CEEeCCCcccc
Q 038407 384 QTLNLSYNNLT 394 (528)
Q Consensus 384 ~~L~Ls~n~l~ 394 (528)
++|+|++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.41 E-value=0.0062 Score=32.17 Aligned_cols=19 Identities=42% Similarity=0.569 Sum_probs=10.6
Q ss_pred CCeeeCcCCcCcccCccccc
Q 038407 407 IKSLDLSYNKLDGKIPLQLV 426 (528)
Q Consensus 407 L~~L~Ls~N~l~~~~~~~~~ 426 (528)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666666 4444444
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.05 E-value=0.00041 Score=69.69 Aligned_cols=182 Identities=25% Similarity=0.247 Sum_probs=86.2
Q ss_pred CCEEEccCCcCccccChhhhh---cCCCCceeeccCCcCcccCC----ccccCC-CCCCEEEccCCccccc----CChhh
Q 038407 66 LMLLDVSNNNLQGHIPVKIGD---FLPSLKYFNISMNAFDSSIP----TSFGNM-NFLISLDLSNNQLTGE----IPEHL 133 (528)
Q Consensus 66 L~~L~ls~n~l~~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~----~~~~~l-~~L~~L~l~~n~l~~~----~~~~~ 133 (528)
+..|.+.+|.+.......+.+ ..++|..|++++|.+.+..- ..+... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 455555555554322222221 13455555555555542111 111121 3455555555555432 22222
Q ss_pred hhCCCCCCEEEccCCcCcc----cCCc----cCCCCCCCCEEEccCCcCCccC-----cccCCCCC-CCEEEccCCccCc
Q 038407 134 AMGCVDLEYLLLSNNSLEG----HLFP----RNFNLTNLRRLQLDGNHFREIL-----ESLSKCSS-LEGLYLSDNNLSG 199 (528)
Q Consensus 134 ~~~l~~L~~L~l~~n~l~~----~~~~----~~~~l~~L~~L~l~~n~~~~~~-----~~~~~l~~-L~~L~L~~n~l~~ 199 (528)
. ....++.++++.|.+.. .... .+....++++|.+.+|.++... ..+...+. +..+++..|.+.+
T Consensus 169 ~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 E-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred h-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 2 24456666666665431 0111 1223556666666666655321 13334444 5557777766653
Q ss_pred c----CCccccCC-CCCCeeecCCceeeccC----cccccCCCCCCEEEcccCccccc
Q 038407 200 K----IPRWLGNL-SMLQHIILPENHFEGPI----PMEFCQLDSLQILNISDNNISGI 248 (528)
Q Consensus 200 ~----~~~~l~~l-~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~L~~n~l~~~ 248 (528)
. ....+..+ ..+++++++.|.++... ...+..++.++.+.+++|.+...
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 2 11223333 45677777777766432 23344556777777777766543
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.96 E-value=0.0017 Score=56.70 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=42.1
Q ss_pred ccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccC
Q 038407 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAH 438 (528)
Q Consensus 359 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~ 438 (528)
.+.||++.|++. ..-..|+-++.+..|+++.|++. ..|..++++..++.+++.+|..+ ..|.++...++++.+++.+
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 445555555544 23334444555555555555555 44555555555555555555554 3455555555555555555
Q ss_pred CCC
Q 038407 439 NNL 441 (528)
Q Consensus 439 N~l 441 (528)
|.+
T Consensus 121 ~~~ 123 (326)
T KOG0473|consen 121 TEF 123 (326)
T ss_pred Ccc
Confidence 543
No 75
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=93.69 E-value=0.026 Score=66.50 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=27.0
Q ss_pred EccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407 435 NVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP 472 (528)
Q Consensus 435 ~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~ 472 (528)
||++|+|+...+..+..+.+|+.++|++|||.|+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 46667776665556666667777777888888888764
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.99 E-value=0.11 Score=28.66 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=16.5
Q ss_pred CCCCCEEEccCCcCcccCChhhhh
Q 038407 14 QHDLEFVRLSHLNLNGEFPNWLLE 37 (528)
Q Consensus 14 ~~~L~~L~Ls~~~~~~~~~~~~~~ 37 (528)
+++|++|+|++|++. .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467788888888876 67776653
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.99 E-value=0.11 Score=28.66 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=16.5
Q ss_pred CCCCCEEEccCCcCcccCChhhhh
Q 038407 14 QHDLEFVRLSHLNLNGEFPNWLLE 37 (528)
Q Consensus 14 ~~~L~~L~Ls~~~~~~~~~~~~~~ 37 (528)
+++|++|+|++|++. .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467788888888876 67776653
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.60 E-value=0.096 Score=28.83 Aligned_cols=14 Identities=43% Similarity=0.705 Sum_probs=6.7
Q ss_pred CCCCeeeCcCCcCc
Q 038407 405 KHIKSLDLSYNKLD 418 (528)
Q Consensus 405 ~~L~~L~Ls~N~l~ 418 (528)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444455555444
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.60 E-value=0.096 Score=28.83 Aligned_cols=14 Identities=43% Similarity=0.705 Sum_probs=6.7
Q ss_pred CCCCeeeCcCCcCc
Q 038407 405 KHIKSLDLSYNKLD 418 (528)
Q Consensus 405 ~~L~~L~Ls~N~l~ 418 (528)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444455555444
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.49 E-value=0.094 Score=25.57 Aligned_cols=11 Identities=45% Similarity=0.748 Sum_probs=3.3
Q ss_pred CCEEEccCCcC
Q 038407 164 LRRLQLDGNHF 174 (528)
Q Consensus 164 L~~L~l~~n~~ 174 (528)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33444444433
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.40 E-value=0.0017 Score=65.39 Aligned_cols=183 Identities=23% Similarity=0.189 Sum_probs=116.5
Q ss_pred CCEEEccCCcCcccCChhh---hhcCCCCCEEEccCCCCcccc----CcCccCC-CCCCEEEccCCcCcccc----Chhh
Q 038407 17 LEFVRLSHLNLNGEFPNWL---LENNTKLESNFLLNNSLPGLF----LLPIHCH-KSLMLLDVSNNNLQGHI----PVKI 84 (528)
Q Consensus 17 L~~L~Ls~~~~~~~~~~~~---~~~l~~L~~L~L~~n~~~~~~----~~~~~~~-~~L~~L~ls~n~l~~~~----~~~~ 84 (528)
+..|.|.+|.+.......+ +...+.|+.|++++|.+.+.. ...+... ..+++|++..|.++..- ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6778888888764433222 566788888888888876431 1223332 56777888777776432 2333
Q ss_pred hhcCCCCceeeccCCcCcc----cCCcc----ccCCCCCCEEEccCCcccccCCh---hhhhCCCC-CCEEEccCCcCcc
Q 038407 85 GDFLPSLKYFNISMNAFDS----SIPTS----FGNMNFLISLDLSNNQLTGEIPE---HLAMGCVD-LEYLLLSNNSLEG 152 (528)
Q Consensus 85 ~~~l~~L~~L~L~~n~i~~----~~~~~----~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~-L~~L~l~~n~l~~ 152 (528)
.. ...++.++++.|.+.. ..+.. +....++++|.+.+|.++...-. ......+. +..|++.+|.+.+
T Consensus 169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 33 5678888888887731 12222 33467889999998887621111 11122333 6668999998764
Q ss_pred c----CCccCCCC-CCCCEEEccCCcCCccCc-----ccCCCCCCCEEEccCCccCcc
Q 038407 153 H----LFPRNFNL-TNLRRLQLDGNHFREILE-----SLSKCSSLEGLYLSDNNLSGK 200 (528)
Q Consensus 153 ~----~~~~~~~l-~~L~~L~l~~n~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~ 200 (528)
. ..+.+..+ ..+++++++.|.+..... .+..++.++++.++.|.+...
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 3 22334455 678999999999875432 566778999999999988643
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.79 E-value=0.01 Score=51.98 Aligned_cols=86 Identities=24% Similarity=0.315 Sum_probs=44.3
Q ss_pred hhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCC
Q 038407 377 IGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFN 456 (528)
Q Consensus 377 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~ 456 (528)
+..+...+.||++.|++. -.-..|.-++.|..||++.|++. -.|..+.....++.+++..|..+ ..|....+.+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344455555555555554 22333455555555555555554 34555555555555555555554 3444444555555
Q ss_pred cCcccCCCC
Q 038407 457 ESSYEGNPF 465 (528)
Q Consensus 457 ~l~l~~Np~ 465 (528)
..+..+||+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 555555553
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.32 E-value=0.031 Score=48.14 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=40.2
Q ss_pred CCEEEccCCCCccccCcCccCCCCCCEEEccCCc-CccccChhhhhcCCCCceeeccCC-cCcccCCccccCCCCCCEEE
Q 038407 42 LESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN-LQGHIPVKIGDFLPSLKYFNISMN-AFDSSIPTSFGNMNFLISLD 119 (528)
Q Consensus 42 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~ 119 (528)
++.+|-+++.+....-+.+.+++.++.|.+.++. +.+.--..+....++|+.|++++| +|+...-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4555555555555444555556666666665553 111111122223456666666655 34433334445555666555
Q ss_pred ccC
Q 038407 120 LSN 122 (528)
Q Consensus 120 l~~ 122 (528)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.13 E-value=0.079 Score=28.54 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=6.5
Q ss_pred CCCCeeeCcCCcCcc
Q 038407 405 KHIKSLDLSYNKLDG 419 (528)
Q Consensus 405 ~~L~~L~Ls~N~l~~ 419 (528)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555543
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.60 E-value=0.042 Score=47.34 Aligned_cols=81 Identities=22% Similarity=0.149 Sum_probs=41.3
Q ss_pred CCceeeccCCcCcccCCccccCCCCCCEEEccCCcccc-cCChhhhhCCCCCCEEEccCC-cCcccCCccCCCCCCCCEE
Q 038407 90 SLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG-EIPEHLAMGCVDLEYLLLSNN-SLEGHLFPRNFNLTNLRRL 167 (528)
Q Consensus 90 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 167 (528)
.++.++.+++.|....-+.+.+++.++.|.+.+|.--+ -.-..+....++|+.|++++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 45666666666665555556666666666666654211 000011112355666666655 3554334444455555555
Q ss_pred Ecc
Q 038407 168 QLD 170 (528)
Q Consensus 168 ~l~ 170 (528)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.25 E-value=0.72 Score=25.37 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=8.2
Q ss_pred CCCCeeeCcCCcCc
Q 038407 405 KHIKSLDLSYNKLD 418 (528)
Q Consensus 405 ~~L~~L~Ls~N~l~ 418 (528)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666664
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=85.01 E-value=3.8 Score=40.41 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=13.1
Q ss_pred CCCCEEEccCCcCCcCCCC
Q 038407 281 NKLQLIDLSNNILSGHIPP 299 (528)
Q Consensus 281 ~~L~~L~ls~n~l~~~~p~ 299 (528)
..+++|+.+.|...+...+
T Consensus 354 ~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred eeeeEeecccccccccccc
Confidence 3478888888877765443
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.51 E-value=12 Score=37.24 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=26.8
Q ss_pred CCEEEcccCcccccccchh---hhccccceeeeccCcccc----cCcccccCCCCCCEEEccCCcC
Q 038407 235 LQILNISDNNISGIYHHAS---ILSLSKDQLVLAHNNFEG----EVPIQLCQLNKLQLIDLSNNIL 293 (528)
Q Consensus 235 L~~L~L~~n~l~~~~~~~~---~~~~~~~~L~L~~n~l~~----~~~~~l~~l~~L~~L~ls~n~l 293 (528)
+..+.++.++...-..... .....+.++++++|.... .+|.+...-..++.+..+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 4455556555543322211 111222556666664432 2344444445555555555543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.25 E-value=2.4 Score=42.61 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=7.1
Q ss_pred CCCCCCEEEccCCcC
Q 038407 13 HQHDLEFVRLSHLNL 27 (528)
Q Consensus 13 ~~~~L~~L~Ls~~~~ 27 (528)
+.+.+..++|++|++
T Consensus 216 n~p~i~sl~lsnNrL 230 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRL 230 (585)
T ss_pred CCcceeeeecccchh
Confidence 334444455555544
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.06 E-value=2.6 Score=23.61 Aligned_cols=14 Identities=50% Similarity=0.703 Sum_probs=9.4
Q ss_pred CCCCeeeCcCCcCc
Q 038407 405 KHIKSLDLSYNKLD 418 (528)
Q Consensus 405 ~~L~~L~Ls~N~l~ 418 (528)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777765
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.26 E-value=2.5 Score=23.19 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=11.9
Q ss_pred CCCCEEEccCCCCccCCCC
Q 038407 429 NTLAVFNVAHNNLSGKIPE 447 (528)
Q Consensus 429 ~~L~~L~ls~N~l~~~~p~ 447 (528)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35777778888776 4443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.06 E-value=2.1 Score=42.97 Aligned_cols=14 Identities=43% Similarity=0.484 Sum_probs=6.9
Q ss_pred ccCCEEeCCCcccc
Q 038407 381 TRIQTLNLSYNNLT 394 (528)
Q Consensus 381 ~~L~~L~Ls~n~l~ 394 (528)
+.+..++|++|++.
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 34445555555544
No 93
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=54.23 E-value=6.3 Score=25.61 Aligned_cols=10 Identities=50% Similarity=1.129 Sum_probs=8.9
Q ss_pred CCCCCCCCCC
Q 038407 463 NPFLCGLPLP 472 (528)
Q Consensus 463 Np~~c~~~l~ 472 (528)
|||.|+|.+.
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 8999999875
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=50.04 E-value=11 Score=20.41 Aligned_cols=12 Identities=25% Similarity=0.113 Sum_probs=6.9
Q ss_pred CCCCCEEEccCC
Q 038407 14 QHDLEFVRLSHL 25 (528)
Q Consensus 14 ~~~L~~L~Ls~~ 25 (528)
+++|++|+|++|
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 355666666655
No 95
>PF15102 TMEM154: TMEM154 protein family
Probab=45.70 E-value=11 Score=30.82 Aligned_cols=20 Identities=5% Similarity=0.220 Sum_probs=11.1
Q ss_pred hhhHHHHHHhhhheeeccCC
Q 038407 509 ISYIIVILGIMGVLYVNPYW 528 (528)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~w 528 (528)
|.++++++.+++++.+++||
T Consensus 66 VLLvlLLl~vV~lv~~~kRk 85 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRK 85 (146)
T ss_pred HHHHHHHHHHHHheeEEeec
Confidence 44555555555555555666
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=43.38 E-value=16 Score=44.59 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=27.6
Q ss_pred eCCCccccccCCccccCCCCCCeeeCcCCcCc
Q 038407 387 NLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418 (528)
Q Consensus 387 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 418 (528)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999877888888999999999998876
No 97
>PRK14762 membrane protein; Provisional
Probab=29.39 E-value=51 Score=17.67 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=10.7
Q ss_pred hhhhhhHHHHHHhhhhe
Q 038407 506 SFTISYIIVILGIMGVL 522 (528)
Q Consensus 506 ~~~~~~~~~~~~~~~~~ 522 (528)
.+++.|.++++++.+++
T Consensus 7 ~i~iifligllvvtgvf 23 (27)
T PRK14762 7 AVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566777777666553
No 98
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=27.63 E-value=43 Score=20.66 Aligned_cols=20 Identities=10% Similarity=0.301 Sum_probs=8.6
Q ss_pred hhhhhhhhHHHHHHhhhhee
Q 038407 504 YISFTISYIIVILGIMGVLY 523 (528)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~ 523 (528)
..++++..+++++++..+++
T Consensus 14 a~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 14 AVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEEechHHHHHHHHHHhh
Confidence 33444444444444433333
No 99
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=24.71 E-value=47 Score=20.14 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=11.5
Q ss_pred hhhhhhhhhhHHHHHHhhh
Q 038407 502 SFYISFTISYIIVILGIMG 520 (528)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~ 520 (528)
..++++.++++++++.++.
T Consensus 7 aIIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFY 25 (38)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665554
No 100
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=23.74 E-value=36 Score=25.37 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=16.5
Q ss_pred chhhhhhhhhhHHHHHHhhhheeeccCC
Q 038407 501 DSFYISFTISYIIVILGIMGVLYVNPYW 528 (528)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w 528 (528)
.|.|++.+-+++++++++.++.+-+.+|
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~ 68 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKH 68 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhh
Confidence 3556666666666666666665555444
Done!