Query 038407
Match_columns 528
No_of_seqs 470 out of 4275
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.3E-55 4.6E-60 474.6 32.2 471 3-479 235-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 1E-51 3.5E-56 444.4 34.9 432 3-467 212-718 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.5E-49 5.2E-54 418.2 37.1 458 3-471 45-565 (606)
4 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-48 4.9E-53 424.2 34.5 464 3-472 36-566 (844)
5 3vq2_A TLR4, TOLL-like recepto 100.0 7.7E-48 2.6E-52 405.2 32.3 428 4-472 45-564 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 9.4E-47 3.2E-51 402.2 39.1 456 3-471 37-627 (680)
7 2z63_A TOLL-like receptor 4, v 100.0 3.5E-46 1.2E-50 389.9 34.0 424 7-472 44-537 (570)
8 4eco_A Uncharacterized protein 100.0 6.2E-47 2.1E-51 398.1 25.0 363 50-468 193-602 (636)
9 4eco_A Uncharacterized protein 100.0 1.2E-46 4E-51 396.0 26.4 355 31-445 198-603 (636)
10 3t6q_A CD180 antigen; protein- 100.0 2.5E-45 8.4E-50 386.1 35.2 446 6-466 26-536 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 4.8E-46 1.6E-50 397.5 27.1 363 50-467 435-841 (876)
12 4ecn_A Leucine-rich repeat pro 100.0 6.6E-45 2.3E-49 388.7 29.3 379 31-470 440-870 (876)
13 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-44 9.5E-49 378.1 31.9 418 6-466 25-534 (606)
14 2z81_A CD282 antigen, TOLL-lik 100.0 9.2E-45 3.1E-49 377.3 26.1 422 6-470 19-514 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 5.2E-45 1.8E-49 376.4 20.2 419 6-471 14-486 (520)
16 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-43 9.3E-48 375.5 34.0 456 6-466 18-549 (680)
17 3j0a_A TOLL-like receptor 5; m 100.0 4.8E-43 1.7E-47 380.8 33.9 452 13-468 22-541 (844)
18 3v47_A TOLL-like receptor 5B a 100.0 1.7E-43 5.9E-48 358.9 28.4 384 17-471 12-413 (455)
19 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-42 5.1E-47 367.3 34.3 423 15-472 52-586 (635)
20 2z63_A TOLL-like receptor 4, v 100.0 1.7E-42 5.9E-47 361.9 28.6 413 15-467 28-508 (570)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-41 4.7E-46 353.7 25.5 412 15-472 52-516 (562)
22 3v47_A TOLL-like receptor 5B a 100.0 6.1E-41 2.1E-45 340.2 26.2 365 15-447 30-413 (455)
23 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-40 5.9E-45 345.1 27.4 402 4-446 39-514 (549)
24 2id5_A Lingo-1, leucine rich r 100.0 2.3E-39 8E-44 330.3 26.0 318 44-442 15-333 (477)
25 2z7x_B TOLL-like receptor 1, v 100.0 7.5E-40 2.6E-44 337.8 20.8 422 18-466 3-457 (520)
26 1o6v_A Internalin A; bacterial 100.0 5.9E-38 2E-42 318.5 31.8 346 13-443 44-389 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-38 6.2E-43 330.2 26.5 378 3-446 64-514 (562)
28 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-37 6.1E-42 328.4 32.3 407 3-444 64-582 (635)
29 1o6v_A Internalin A; bacterial 100.0 3.4E-37 1.2E-41 312.9 31.0 356 25-467 34-389 (466)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-37 6E-42 312.5 28.4 358 3-449 30-394 (457)
31 2id5_A Lingo-1, leucine rich r 100.0 8.2E-38 2.8E-42 318.9 25.6 319 18-418 14-333 (477)
32 1jl5_A Outer protein YOPM; leu 100.0 1.6E-37 5.6E-42 312.4 24.7 205 15-246 11-228 (454)
33 1jl5_A Outer protein YOPM; leu 100.0 3.6E-37 1.2E-41 309.9 26.8 255 5-295 24-291 (454)
34 3o6n_A APL1; leucine-rich repe 100.0 9.6E-37 3.3E-41 302.6 23.1 312 62-469 43-355 (390)
35 3o6n_A APL1; leucine-rich repe 100.0 4.4E-36 1.5E-40 297.8 26.6 337 38-471 43-379 (390)
36 4fmz_A Internalin; leucine ric 100.0 1E-34 3.5E-39 283.5 29.5 306 37-442 41-346 (347)
37 3oja_B Anopheles plasmodium-re 100.0 1.4E-35 4.8E-40 310.0 23.2 311 63-469 50-361 (597)
38 3oja_B Anopheles plasmodium-re 100.0 4.6E-35 1.6E-39 306.1 26.8 336 38-470 49-384 (597)
39 4fmz_A Internalin; leucine ric 100.0 3.1E-34 1.1E-38 280.0 28.6 306 60-465 40-345 (347)
40 3bz5_A Internalin-J, INLJ; leu 100.0 2E-34 7E-39 290.1 25.6 341 36-466 38-387 (457)
41 1ogq_A PGIP-2, polygalacturona 100.0 3.8E-35 1.3E-39 281.4 17.4 258 138-475 50-312 (313)
42 1z7x_W Ribonuclease inhibitor; 100.0 3.6E-37 1.2E-41 313.1 -3.5 383 14-466 2-440 (461)
43 2ft3_A Biglycan; proteoglycan, 100.0 9.6E-33 3.3E-37 267.5 26.5 288 65-440 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-32 7.2E-37 265.1 27.0 245 16-297 34-280 (332)
45 1xku_A Decorin; proteoglycan, 100.0 4.1E-32 1.4E-36 262.9 28.7 289 64-440 31-330 (330)
46 1xku_A Decorin; proteoglycan, 100.0 1.2E-31 4.1E-36 259.6 30.9 247 16-298 32-280 (330)
47 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-31 6.5E-36 255.6 17.6 249 15-269 50-303 (313)
48 1z7x_W Ribonuclease inhibitor; 100.0 5.5E-34 1.9E-38 289.6 -1.0 355 40-467 3-412 (461)
49 3zyj_A Leucine-rich repeat-con 100.0 1.8E-30 6.2E-35 261.5 24.5 252 140-472 45-298 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 2.6E-30 8.9E-35 261.2 23.8 252 140-472 56-309 (452)
51 2z66_A Variable lymphocyte rec 100.0 3.9E-30 1.3E-34 246.3 21.6 234 162-471 28-266 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 3.5E-30 1.2E-34 251.7 17.5 279 112-470 30-318 (353)
53 2z80_A TOLL-like receptor 2, v 100.0 4E-30 1.4E-34 251.3 15.6 205 63-296 30-237 (353)
54 2z66_A Variable lymphocyte rec 100.0 1.1E-29 3.8E-34 243.1 17.4 86 358-443 176-262 (306)
55 1ozn_A Reticulon 4 receptor; N 100.0 8.6E-29 2.9E-33 234.3 20.0 229 165-471 14-243 (285)
56 3zyj_A Leucine-rich repeat-con 100.0 6.9E-28 2.3E-32 242.6 25.0 248 115-443 45-293 (440)
57 3zyi_A Leucine-rich repeat-con 100.0 7.2E-28 2.5E-32 243.3 25.2 248 115-443 56-304 (452)
58 3ogk_B Coronatine-insensitive 100.0 3.3E-31 1.1E-35 277.8 0.2 413 6-444 64-528 (592)
59 1ozn_A Reticulon 4 receptor; N 100.0 5.6E-28 1.9E-32 228.7 21.5 256 17-279 13-270 (285)
60 4fcg_A Uncharacterized protein 100.0 3E-28 1E-32 234.7 18.6 83 358-440 230-312 (328)
61 4fcg_A Uncharacterized protein 100.0 6E-28 2.1E-32 232.6 19.9 225 113-418 81-314 (328)
62 3g06_A SSPH2 (leucine-rich rep 100.0 3.3E-27 1.1E-31 244.4 25.7 134 41-198 41-174 (622)
63 3ogk_B Coronatine-insensitive 100.0 5E-31 1.7E-35 276.5 -3.5 416 18-466 53-526 (592)
64 3g06_A SSPH2 (leucine-rich rep 100.0 2.9E-26 1E-30 237.3 28.5 155 65-247 41-195 (622)
65 3o53_A Protein LRIM1, AGAP0063 99.9 7.2E-29 2.5E-33 238.3 7.4 264 67-444 13-278 (317)
66 2p1m_B Transport inhibitor res 99.9 3.4E-30 1.1E-34 270.3 -2.5 410 9-442 60-519 (594)
67 2z62_A TOLL-like receptor 4, v 99.9 1.3E-26 4.4E-31 218.3 20.9 226 167-471 12-242 (276)
68 3o53_A Protein LRIM1, AGAP0063 99.9 8.4E-29 2.9E-33 237.9 5.1 260 41-415 11-272 (317)
69 1p9a_G Platelet glycoprotein I 99.9 2.6E-26 9E-31 217.0 20.6 207 182-471 7-213 (290)
70 2o6q_A Variable lymphocyte rec 99.9 7.3E-26 2.5E-30 212.2 22.5 114 357-470 109-222 (270)
71 3oja_A Leucine-rich immune mol 99.9 4.7E-28 1.6E-32 246.0 7.0 245 139-471 35-287 (487)
72 1wwl_A Monocyte differentiatio 99.9 9.6E-28 3.3E-32 230.0 7.6 205 137-419 94-310 (312)
73 1wwl_A Monocyte differentiatio 99.9 2.8E-28 9.6E-33 233.7 2.9 248 161-467 42-310 (312)
74 3oja_A Leucine-rich immune mol 99.9 1.5E-26 5.1E-31 234.9 14.4 218 186-469 35-253 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 1.8E-24 6.2E-29 203.6 19.8 225 68-298 11-241 (276)
76 2p1m_B Transport inhibitor res 99.9 9.2E-28 3.1E-32 251.8 -3.9 398 10-442 100-544 (594)
77 2o6q_A Variable lymphocyte rec 99.9 1.1E-23 3.9E-28 197.2 22.7 203 16-248 17-220 (270)
78 1p9a_G Platelet glycoprotein I 99.9 1E-23 3.5E-28 199.2 21.8 204 158-443 6-209 (290)
79 3rfs_A Internalin B, repeat mo 99.9 8.5E-24 2.9E-28 198.3 17.8 202 37-251 38-240 (272)
80 3rfs_A Internalin B, repeat mo 99.9 3.7E-23 1.2E-27 193.9 18.7 183 182-444 38-220 (272)
81 3m19_A Variable lymphocyte rec 99.9 8E-23 2.7E-27 189.3 17.9 180 210-468 15-194 (251)
82 2xwt_C Thyrotropin receptor; s 99.9 2.7E-23 9.2E-28 191.0 13.6 197 186-464 32-237 (239)
83 2ca6_A RAN GTPase-activating p 99.9 2.3E-24 8E-29 213.1 5.6 243 6-249 23-319 (386)
84 2xwt_C Thyrotropin receptor; s 99.9 7.2E-23 2.5E-27 188.2 14.7 206 26-243 22-236 (239)
85 4glp_A Monocyte differentiatio 99.9 3.7E-23 1.3E-27 197.9 13.1 226 15-247 64-308 (310)
86 3goz_A Leucine-rich repeat-con 99.9 4E-24 1.4E-28 209.2 5.1 247 2-248 9-299 (362)
87 3goz_A Leucine-rich repeat-con 99.9 9.6E-24 3.3E-28 206.6 7.5 260 19-296 2-299 (362)
88 1h6u_A Internalin H; cell adhe 99.9 3.7E-22 1.3E-26 190.4 18.3 195 37-248 38-232 (308)
89 2ca6_A RAN GTPase-activating p 99.9 2.3E-24 7.9E-29 213.1 3.1 247 30-297 23-319 (386)
90 1h6u_A Internalin H; cell adhe 99.9 4.6E-22 1.6E-26 189.8 18.8 195 11-223 37-231 (308)
91 4glp_A Monocyte differentiatio 99.9 6.5E-23 2.2E-27 196.2 12.4 205 13-223 89-308 (310)
92 2ast_B S-phase kinase-associat 99.9 2.3E-23 7.7E-28 202.1 9.2 223 15-243 47-282 (336)
93 2ast_B S-phase kinase-associat 99.9 1.6E-23 5.4E-28 203.2 5.1 252 114-449 48-313 (336)
94 3m19_A Variable lymphocyte rec 99.9 2.1E-21 7.3E-26 179.6 18.9 179 65-248 15-194 (251)
95 4ay9_X Follicle-stimulating ho 99.9 7.7E-22 2.6E-26 192.0 14.3 241 18-291 12-256 (350)
96 2v9t_B SLIT homolog 2 protein 99.9 2E-21 6.9E-26 175.6 14.4 158 260-472 14-171 (220)
97 4ay9_X Follicle-stimulating ho 99.9 3.5E-21 1.2E-25 187.3 17.1 240 116-439 12-256 (350)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 7E-21 2.4E-25 172.1 13.9 117 356-472 56-172 (220)
99 2xot_A Amphoterin-induced prot 99.8 2E-21 7E-26 189.8 10.6 181 212-471 21-207 (361)
100 3e6j_A Variable lymphocyte rec 99.8 4.7E-20 1.6E-24 167.8 16.5 155 260-470 22-176 (229)
101 2o6s_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 166.0 15.7 179 18-208 10-188 (208)
102 3cvr_A Invasion plasmid antige 99.8 4.7E-20 1.6E-24 188.6 16.1 182 41-251 60-248 (571)
103 3cvr_A Invasion plasmid antige 99.8 4.6E-19 1.6E-23 181.3 19.3 188 16-233 60-254 (571)
104 1h6t_A Internalin B; cell adhe 99.8 2E-19 7E-24 169.9 15.2 186 20-223 29-214 (291)
105 2o6s_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 159.5 15.6 129 65-195 29-158 (208)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 6.9E-19 2.3E-23 159.0 15.5 120 275-446 51-170 (220)
107 1m9s_A Internalin B; cell inva 99.8 8E-19 2.7E-23 181.6 17.3 191 16-224 22-212 (605)
108 1h6t_A Internalin B; cell adhe 99.8 1.3E-18 4.3E-23 164.4 17.0 188 44-248 28-215 (291)
109 2wfh_A SLIT homolog 2 protein 99.8 6.1E-19 2.1E-23 155.7 13.6 115 357-472 31-145 (193)
110 1w8a_A SLIT protein; signaling 99.8 7.2E-19 2.5E-23 155.2 12.9 115 358-472 30-145 (192)
111 2v9t_B SLIT homolog 2 protein 99.8 2.1E-18 7.3E-23 155.7 15.4 153 212-443 14-166 (220)
112 2xot_A Amphoterin-induced prot 99.8 7.8E-19 2.7E-23 171.4 13.4 176 67-247 21-203 (361)
113 1m9s_A Internalin B; cell inva 99.8 1.8E-18 6.1E-23 179.0 16.5 175 11-201 39-213 (605)
114 3e6j_A Variable lymphocyte rec 99.8 4.1E-18 1.4E-22 155.0 16.3 153 65-222 20-172 (229)
115 1dce_A Protein (RAB geranylger 99.8 6.9E-21 2.4E-25 195.8 -5.7 203 182-459 346-566 (567)
116 1xeu_A Internalin C; cellular 99.7 1.3E-18 4.5E-23 161.7 8.5 165 42-222 21-185 (263)
117 4ezg_A Putative uncharacterize 99.7 7.2E-18 2.5E-22 149.6 12.6 153 206-442 41-194 (197)
118 3sb4_A Hypothetical leucine ri 99.7 3.7E-18 1.3E-22 164.5 10.3 101 161-263 225-327 (329)
119 4ezg_A Putative uncharacterize 99.7 1E-17 3.5E-22 148.7 11.9 153 37-198 41-194 (197)
120 1dce_A Protein (RAB geranylger 99.7 8.7E-21 3E-25 195.1 -9.8 105 115-224 443-548 (567)
121 1w8a_A SLIT protein; signaling 99.7 5.6E-17 1.9E-21 143.1 15.8 114 356-470 53-166 (192)
122 1xeu_A Internalin C; cellular 99.7 9.6E-18 3.3E-22 155.8 11.1 171 62-248 17-187 (263)
123 3sb4_A Hypothetical leucine ri 99.7 1.4E-17 4.8E-22 160.4 11.3 287 88-459 24-327 (329)
124 2o6r_A Variable lymphocyte rec 99.7 5.6E-17 1.9E-21 141.2 13.4 114 357-470 28-141 (177)
125 4fdw_A Leucine rich hypothetic 99.7 1.1E-15 3.9E-20 150.2 21.1 265 14-294 112-383 (401)
126 4fdw_A Leucine rich hypothetic 99.7 2.2E-15 7.7E-20 148.1 22.2 253 36-303 109-367 (401)
127 4fs7_A Uncharacterized protein 99.7 1.6E-15 5.6E-20 149.8 21.2 315 30-439 61-376 (394)
128 4b8c_D Glucose-repressible alc 99.7 2E-17 6.9E-22 175.5 6.3 116 156-298 218-333 (727)
129 4fs7_A Uncharacterized protein 99.7 9.4E-15 3.2E-19 144.3 23.0 317 52-463 59-376 (394)
130 3g39_A Variable lymphocyte rec 99.7 3.7E-16 1.3E-20 134.8 10.8 110 358-470 10-119 (170)
131 4b8c_D Glucose-repressible alc 99.7 2.3E-17 8E-22 175.0 3.6 119 106-228 217-335 (727)
132 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 131.7 13.1 135 13-152 22-161 (168)
133 2ell_A Acidic leucine-rich nuc 99.6 9.5E-16 3.2E-20 132.2 10.4 131 64-198 24-160 (168)
134 2wfh_A SLIT homolog 2 protein 99.6 2.3E-15 7.9E-20 132.6 13.0 89 356-444 53-141 (193)
135 2je0_A Acidic leucine-rich nuc 99.6 7E-16 2.4E-20 130.1 9.3 129 13-146 15-148 (149)
136 2r9u_A Variable lymphocyte rec 99.6 1.4E-15 4.7E-20 131.6 10.8 109 359-470 14-122 (174)
137 2je0_A Acidic leucine-rich nuc 99.6 1.6E-15 5.4E-20 127.9 10.0 83 356-438 63-149 (149)
138 2o6r_A Variable lymphocyte rec 99.6 5.4E-15 1.9E-19 128.6 13.4 91 356-446 51-141 (177)
139 1a9n_A U2A', U2A'; complex (nu 99.6 5.1E-15 1.8E-19 128.6 10.2 136 9-151 13-153 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1E-14 3.6E-19 126.6 8.2 131 60-196 15-151 (176)
141 3g39_A Variable lymphocyte rec 99.5 5.6E-14 1.9E-18 121.0 11.9 90 357-446 30-119 (170)
142 4gt6_A Cell surface protein; l 99.5 5.8E-12 2E-16 124.3 25.8 159 30-195 53-215 (394)
143 2ifg_A High affinity nerve gro 99.5 4.2E-14 1.4E-18 137.3 9.9 109 360-471 11-121 (347)
144 2r9u_A Variable lymphocyte rec 99.5 1.6E-13 5.4E-18 118.6 12.2 88 357-444 33-120 (174)
145 1ds9_A Outer arm dynein; leuci 99.5 5.2E-16 1.8E-20 137.7 -4.6 135 11-153 14-155 (198)
146 4gt6_A Cell surface protein; l 99.5 6.5E-12 2.2E-16 123.9 23.1 100 356-461 287-386 (394)
147 1ds9_A Outer arm dynein; leuci 99.4 7.7E-16 2.6E-20 136.6 -6.1 128 88-246 47-185 (198)
148 2ifg_A High affinity nerve gro 99.3 1.6E-12 5.5E-17 126.0 8.6 114 357-471 31-146 (347)
149 3un9_A NLR family member X1; l 99.3 5.3E-14 1.8E-18 136.9 -2.6 109 138-246 155-283 (372)
150 3un9_A NLR family member X1; l 99.3 8E-14 2.7E-18 135.7 -2.9 161 88-248 71-254 (372)
151 4h09_A Hypothetical leucine ri 99.3 1.2E-09 4E-14 107.2 24.9 304 36-431 42-358 (379)
152 4h09_A Hypothetical leucine ri 99.2 4.8E-09 1.7E-13 102.8 25.0 298 61-450 43-353 (379)
153 2ra8_A Uncharacterized protein 98.9 2.6E-09 8.8E-14 103.0 6.9 85 9-97 133-227 (362)
154 2ra8_A Uncharacterized protein 98.8 2.1E-09 7E-14 103.6 5.0 65 183-247 250-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 6.5E-09 2.2E-13 90.4 1.2 115 36-151 32-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 7.7E-08 2.6E-12 83.5 3.8 121 6-126 27-164 (185)
157 3rw6_A Nuclear RNA export fact 98.5 3.4E-08 1.1E-12 90.2 1.5 96 362-459 148-257 (267)
158 3rw6_A Nuclear RNA export fact 98.4 3.3E-07 1.1E-11 83.6 6.3 78 356-435 169-257 (267)
159 3rfe_A Platelet glycoprotein I 98.2 9.5E-07 3.3E-11 71.3 5.2 61 409-471 12-73 (130)
160 3e4g_A ATP synthase subunit S, 98.2 2.7E-07 9.1E-12 78.0 1.1 84 358-441 62-151 (176)
161 3e4g_A ATP synthase subunit S, 98.1 5.3E-07 1.8E-11 76.1 1.7 85 40-124 61-150 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 6.1E-05 2.1E-09 64.8 2.4 113 37-150 38-169 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00082 2.8E-08 53.9 6.7 55 361-417 12-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00015 5.2E-09 62.3 2.0 64 180-243 65-136 (197)
165 2lz0_A Uncharacterized protein 68.7 10 0.00036 28.0 5.6 41 396-437 11-51 (100)
166 2lz0_A Uncharacterized protein 65.5 8.1 0.00028 28.6 4.5 45 369-414 8-52 (100)
167 2k1k_A Ephrin type-A receptor 24.0 31 0.0011 20.2 1.2 11 504-514 13-23 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-55 Score=474.55 Aligned_cols=471 Identities=29% Similarity=0.414 Sum_probs=314.3
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCC-CCCCEEEccCCcCccccC
Q 038407 3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCH-KSLMLLDVSNNNLQGHIP 81 (528)
Q Consensus 3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~ 81 (528)
++|.+|.++.++++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred CCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 55677888888888888888888877666542 56666666666666665555555443 666666666666655555
Q ss_pred hhhhhcCCCCceeeccCCcCcccCCcc-ccCCCCCCEEEccCCcccccCChhhhh------------------------C
Q 038407 82 VKIGDFLPSLKYFNISMNAFDSSIPTS-FGNMNFLISLDLSNNQLTGEIPEHLAM------------------------G 136 (528)
Q Consensus 82 ~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------~ 136 (528)
..+.. +++|++|++++|.+++.+|.. +.++++|++|++++|.+++.+|..+.. .
T Consensus 312 ~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 312 PFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp GGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred hHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 55444 556666666666555444433 555555555555555555445544331 1
Q ss_pred --CCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCcc-CcccCCCCCCCEEEccCCccCccCCccccCCCCCCe
Q 038407 137 --CVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI-LESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQH 213 (528)
Q Consensus 137 --l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 213 (528)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+. +..+..+++|+.|++++|.+.+.+|..+..+++|++
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 34566666666666555566666666777777777766633 336666777777777777777667777777777777
Q ss_pred eecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcC
Q 038407 214 IILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNIL 293 (528)
Q Consensus 214 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l 293 (528)
|++++|++++..|..+..+++|++|++++|++.+..+..+.....+++|++++|++.+.+|..++.+++|+.|++++|++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 77777777777777777777777777777777766666555545557777777777777777777777777777777777
Q ss_pred CcCCCCCCcCCccccccccCCCC-------CCCC--ccccc--cccccccccccc-----cceeeeeccc--cccccccc
Q 038407 294 SGHIPPCLDNTTLHESYIDTSSP-------ESSE--TSFVD--EGFAFYKEKKIQ-----ETFKFTTKNI--AYTYRGRV 355 (528)
Q Consensus 294 ~~~~p~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~ 355 (528)
+|.+|..+............... .... ..... ..+......... ....+..+.. ........
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 77777655443211100000000 0000 00000 000000000000 0000000000 00111123
Q ss_pred cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN 435 (528)
Q Consensus 356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 435 (528)
+++|+.||+++|++++.+|..++.+++|+.|+|++|++++.+|..|+++++|++|||++|++++.+|..+..+++|++||
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCCCCCCCCC
Q 038407 436 VAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLPKSCNEKA 479 (528)
Q Consensus 436 ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~~~c~~~~ 479 (528)
+++|+++|.+|+.. ++.++...++.|||.+||.|+. .|....
T Consensus 711 ls~N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 711 LSNNNLSGPIPEMG-QFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp CCSSEEEEECCSSS-SGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CcCCcccccCCCch-hhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 99999999999864 8899999999999999999987 887544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-51 Score=444.42 Aligned_cols=432 Identities=29% Similarity=0.398 Sum_probs=346.5
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407 3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV 82 (528)
Q Consensus 3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 82 (528)
+++.+|. ++++++|++|++++|.+++.+|.. +.++++|++|++++|.+++..|.. .+++|++|++++|.+++.+|.
T Consensus 212 l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~ 287 (768)
T 3rgz_A 212 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 287 (768)
T ss_dssp CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCC
T ss_pred CCCCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCH
Confidence 3455555 777777888888877777666655 467788888888888777666554 677888888888888777888
Q ss_pred hhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCC
Q 038407 83 KIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT 162 (528)
Q Consensus 83 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 162 (528)
.++..+++|++|++++|.+++..|..|+++++|++|++++|.+++.+|...+..+++|++|++++|.+++..+..+..++
T Consensus 288 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 367 (768)
T 3rgz_A 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367 (768)
T ss_dssp CSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT
T ss_pred HHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhh
Confidence 77775688999999999998888888999999999999999988888887667889999999999998877788887776
Q ss_pred -CCCEEEccCCcCCcc-CcccCC--CCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEE
Q 038407 163 -NLRRLQLDGNHFREI-LESLSK--CSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQIL 238 (528)
Q Consensus 163 -~L~~L~l~~n~~~~~-~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 238 (528)
+|++|++++|.+.+. ++.+.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..+++|+.|
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 899999999888753 334444 7889999999999988888899999999999999999998888899999999999
Q ss_pred EcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccc-cccCCCCC
Q 038407 239 NISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHES-YIDTSSPE 317 (528)
Q Consensus 239 ~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~-~~~~~~~~ 317 (528)
++++|.+.+..+..+.....+++|++++|++++.+|..+..+++|+.|++++|++++.+|.++...+.... .+..+...
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 99999998877776666666689999999999888999999999999999999998888887766542111 11100000
Q ss_pred CCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCC-----------------------
Q 038407 318 SSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIP----------------------- 374 (528)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----------------------- 374 (528)
.. .......+++|+.|++++|.+.+.+|
T Consensus 528 ----~~-------------------------~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 528 ----GN-------------------------IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp ----EE-------------------------CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred ----Cc-------------------------CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 00 00001124456666666666555444
Q ss_pred -----------------------------------------------hhhhccccCCEEeCCCccccccCCccccCCCCC
Q 038407 375 -----------------------------------------------PQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHI 407 (528)
Q Consensus 375 -----------------------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 407 (528)
..+..+++|+.|+|++|++++.+|..++++++|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence 345556889999999999999999999999999
Q ss_pred CeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407 408 KSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467 (528)
Q Consensus 408 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c 467 (528)
+.|+|++|++++.+|..++.+++|++|||++|++++.+|..+..+++|+.+++++|+...
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 999999999999999999999999999999999999999999999999999999998754
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-49 Score=418.18 Aligned_cols=458 Identities=19% Similarity=0.191 Sum_probs=306.9
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407 3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV 82 (528)
Q Consensus 3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 82 (528)
+++..|.+|.++++|++|+|++|.+.+..|.. |.++++|++|+|++|.+++..|..+.++++|++|++++|.++ .++.
T Consensus 45 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~ 122 (606)
T 3t6q_A 45 LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDF 122 (606)
T ss_dssp CSEECTTTSTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGG
T ss_pred cCcCChhHhccCccceEEECCCCccceeChhh-ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCc
Confidence 44556778888889999999888887544544 688888999999888888888888888888888988888888 4432
Q ss_pred hhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC--EEEccCCcCcccCCccCCC
Q 038407 83 KIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE--YLLLSNNSLEGHLFPRNFN 160 (528)
Q Consensus 83 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~ 160 (528)
..+..+++|++|++++|.+++.....+..+++|++|++++|.++ .++...+..+++|+ +|++++|.+++..+..+..
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~ 201 (606)
T 3t6q_A 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT
T ss_pred chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChhHhhh
Confidence 23334788888888888888655455555888888888888887 55555556778887 7788887776544333221
Q ss_pred C---------------------------------------------------CCCCEEEccCCcCCccCc-ccCCCCCCC
Q 038407 161 L---------------------------------------------------TNLRRLQLDGNHFREILE-SLSKCSSLE 188 (528)
Q Consensus 161 l---------------------------------------------------~~L~~L~l~~n~~~~~~~-~~~~l~~L~ 188 (528)
. .+|++|++++|.+..+++ .+..+++|+
T Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 281 (606)
T 3t6q_A 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281 (606)
T ss_dssp CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCS
T ss_pred ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCC
Confidence 0 034555555555555544 355666666
Q ss_pred EEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccch-hhhccccceeeeccC
Q 038407 189 GLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHA-SILSLSKDQLVLAHN 267 (528)
Q Consensus 189 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L~L~~n 267 (528)
+|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.. +.....+++|++++|
T Consensus 282 ~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp EEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred EEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 6666666665 45555666666666666666666555556666666666666666655333322 222223366666666
Q ss_pred cccccC--cccccCCCCCCEEEccCCcCCcCCCCCCcCCcccc-ccccCCCCCCCCccccccccccccccccccceeeee
Q 038407 268 NFEGEV--PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHE-SYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTT 344 (528)
Q Consensus 268 ~l~~~~--~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (528)
.+.+.. +..+..+++|+.|++++|.+.+..|..+...+... ..+.......... ...+ ........+.+..
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~---~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA---QSPF---QNLHLLKVLNLSH 434 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT---CCTT---TTCTTCCEEECTT
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc---chhh---hCcccCCEEECCC
Confidence 665544 44556666666666666665555444444332111 0000000000000 0000 0000111111111
Q ss_pred cccccc--ccccccCcccEEECCCCcCccC---CChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcc
Q 038407 345 KNIAYT--YRGRVISYLSELDLSYNKLIGQ---IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDG 419 (528)
Q Consensus 345 ~~~~~~--~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 419 (528)
+.+... .....+++|++|++++|.+.+. .+..+..+++|+.|++++|++++..|..|.++++|++|+|++|++++
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 111111 1112367899999999999862 34678999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407 420 KIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 420 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l 471 (528)
..|..+..++.| +|++++|++++..|..+..+++|+.+++++|||.|+|+.
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999 999999999998888888899999999999999999874
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-48 Score=424.18 Aligned_cols=464 Identities=21% Similarity=0.178 Sum_probs=316.5
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407 3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV 82 (528)
Q Consensus 3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 82 (528)
+++..|..|.++++|++|+|++|...+.+++..|.++++|++|+|++|.+.+..|..|.++++|++|++++|.+++.++.
T Consensus 36 i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 115 (844)
T 3j0a_A 36 IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115 (844)
T ss_dssp CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccccc
Confidence 34555677777888888888877665566555567788888888888888777777788888888888888877754444
Q ss_pred h-hhhcCCCCceeeccCCcCcccCC-ccccCCCCCCEEEccCCcccccCChhhhhCC--CCCCEEEccCCcCcccCCccC
Q 038407 83 K-IGDFLPSLKYFNISMNAFDSSIP-TSFGNMNFLISLDLSNNQLTGEIPEHLAMGC--VDLEYLLLSNNSLEGHLFPRN 158 (528)
Q Consensus 83 ~-~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~ 158 (528)
. .+..+++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+. .+ ++|+.|+++.|.+.+..+..+
T Consensus 116 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEECCCCccccccccch
Confidence 3 23337788888888887776544 4677788888888888877755554432 33 667777777777776555555
Q ss_pred CCCCC------CCEEEccCCcCCccCc-------------------------------------ccCC--CCCCCEEEcc
Q 038407 159 FNLTN------LRRLQLDGNHFREILE-------------------------------------SLSK--CSSLEGLYLS 193 (528)
Q Consensus 159 ~~l~~------L~~L~l~~n~~~~~~~-------------------------------------~~~~--l~~L~~L~L~ 193 (528)
..+.+ |+.|++++|.+....+ .+.. .++|+.|+++
T Consensus 195 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls 274 (844)
T 3j0a_A 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274 (844)
T ss_dssp CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECT
T ss_pred hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECC
Confidence 54444 7888888775542211 1111 2578888888
Q ss_pred CCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccC
Q 038407 194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV 273 (528)
Q Consensus 194 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~ 273 (528)
+|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|++.++.+..+.....+++|++++|.+.+..
T Consensus 275 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp TCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred CCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC
Confidence 88887777778888888888888888888777778888888888888888887776665555556688888888888777
Q ss_pred cccccCCCCCCEEEccCCcCCcCCC-CCCcCCccccccccCCCCCCCCc---ccccccccc------ccccccccceeee
Q 038407 274 PIQLCQLNKLQLIDLSNNILSGHIP-PCLDNTTLHESYIDTSSPESSET---SFVDEGFAF------YKEKKIQETFKFT 343 (528)
Q Consensus 274 ~~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~ 343 (528)
+..|..+++|+.|++++|.+++... +.+..+.+....+.......... .+....+.. .........+.+.
T Consensus 355 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434 (844)
T ss_dssp SSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEE
T ss_pred hhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCC
Confidence 7778888888888888888764211 11111111111111000000000 000000000 0011111222233
Q ss_pred eccccc---cccccccCcccEEECCCCcCc-----cCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCC
Q 038407 344 TKNIAY---TYRGRVISYLSELDLSYNKLI-----GQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYN 415 (528)
Q Consensus 344 ~~~~~~---~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 415 (528)
.+.+.. ......+++|+.|++++|.+. +..+..|.++++|+.|+|++|++++..|..|.++++|++|+|++|
T Consensus 435 ~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp SCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred CCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence 322221 111122567888888888886 344567888999999999999999999999999999999999999
Q ss_pred cCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407 416 KLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP 472 (528)
Q Consensus 416 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~ 472 (528)
++++..+..+. ++|+.|++++|++++..|..+ .+++.+++++|||.|+|++.
T Consensus 515 ~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 515 RLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred CCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence 99987776665 899999999999999988754 58889999999999999864
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.7e-48 Score=405.20 Aligned_cols=428 Identities=19% Similarity=0.162 Sum_probs=289.8
Q ss_pred cccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChh
Q 038407 4 VAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVK 83 (528)
Q Consensus 4 ~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 83 (528)
++..+.+|.++++|++|++++|.+++..| ..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+.+..+..
T Consensus 45 ~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 123 (606)
T 3vq2_A 45 KILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123 (606)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC
T ss_pred CEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccc
Confidence 44455567777777777777777763333 33567777777777777777766777777777777777777776322233
Q ss_pred hhhcCCCCceeeccCCcCcc-cCCccccCCCCCCEEEccCCcccccCChhhhhCCCC----CCEEEccCCcCcccCCcc-
Q 038407 84 IGDFLPSLKYFNISMNAFDS-SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD----LEYLLLSNNSLEGHLFPR- 157 (528)
Q Consensus 84 ~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~----L~~L~l~~n~l~~~~~~~- 157 (528)
+.. +++|++|++++|.+++ .+|..|+++++|++|++++|++++..+..+ ..+.+ +.+|++++|.+++..+..
T Consensus 124 ~~~-l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~ 201 (606)
T 3vq2_A 124 IGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAF 201 (606)
T ss_dssp CTT-CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTT
T ss_pred cCC-CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccc
Confidence 333 6777777777777765 346777777777777777777663222211 12221 123444444333211111
Q ss_pred -------------------------------------------------------------------------------C
Q 038407 158 -------------------------------------------------------------------------------N 158 (528)
Q Consensus 158 -------------------------------------------------------------------------------~ 158 (528)
+
T Consensus 202 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~ 281 (606)
T 3vq2_A 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281 (606)
T ss_dssp TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSC
T ss_pred cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccccc
Confidence 2
Q ss_pred CCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEE
Q 038407 159 FNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQIL 238 (528)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 238 (528)
..+++|+.|++++|.+..++ .+..+++|++|++++|.+. .+| .+ .+++|++|++++|+..+.. .+..+++|++|
T Consensus 282 ~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp GGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred ccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence 23455555555555555554 5667778888888888884 666 34 7777888888777544332 45677777778
Q ss_pred EcccCcccccc--cchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC-CCCcCCccccccccCCC
Q 038407 239 NISDNNISGIY--HHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP-PCLDNTTLHESYIDTSS 315 (528)
Q Consensus 239 ~L~~n~l~~~~--~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~~~~~~~~~~~~~ 315 (528)
++++|++++.. +..+.....+++|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+...+....
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~------ 428 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY------ 428 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE------
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE------
Confidence 87777776653 3333333444777777777765 34667777777777777777776554 33333221100
Q ss_pred CCCCCccccccccccccccccccceeeeeccccc--cccccccCcccEEECCCCcCcc-CCChhhhccccCCEEeCCCcc
Q 038407 316 PESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY--TYRGRVISYLSELDLSYNKLIG-QIPPQIGNLTRIQTLNLSYNN 392 (528)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~ 392 (528)
+.+..+.+.. ......+++|++|++++|.+.+ ..|..+..+++|+.|++++|+
T Consensus 429 ------------------------L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 429 ------------------------LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp ------------------------EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ------------------------EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 0000000000 0001225689999999999987 478899999999999999999
Q ss_pred ccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccC-CCCcCcccCCCCCCCCCC
Q 038407 393 LTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFA-TFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 393 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~-~l~~l~l~~Np~~c~~~l 471 (528)
+++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|+++ .+|..+..++ +|+.+++++|||.|+|++
T Consensus 485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99999999999999999999999999999999999999999999999999 5677687886 599999999999999986
Q ss_pred C
Q 038407 472 P 472 (528)
Q Consensus 472 ~ 472 (528)
.
T Consensus 564 ~ 564 (606)
T 3vq2_A 564 Q 564 (606)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.4e-47 Score=402.20 Aligned_cols=456 Identities=21% Similarity=0.186 Sum_probs=309.5
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407 3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV 82 (528)
Q Consensus 3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 82 (528)
+++..+.+|.++++|++|+|++|.+++..|. .|.++++|++|+|++|.+++..+.+|.++++|++|++++|.+. .++.
T Consensus 37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~ 114 (680)
T 1ziw_A 37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKN 114 (680)
T ss_dssp CCCCCGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCS
T ss_pred CCCcCHHHHhCCCcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccCh
Confidence 3455556788888888888888888754454 4678888888888888888766667888888888888888887 4544
Q ss_pred hhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhh--hCCCCCCEEEccCCcCcccCC-----
Q 038407 83 KIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLA--MGCVDLEYLLLSNNSLEGHLF----- 155 (528)
Q Consensus 83 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----- 155 (528)
..+..+++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+ ..+++|++|++++|.+++..+
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 33334788888888888888777777888888888888888776 3333222 123455555555554443222
Q ss_pred ----------------------------------------------ccCCCC--CCCCEEEccCCcCCccCc-ccCCCCC
Q 038407 156 ----------------------------------------------PRNFNL--TNLRRLQLDGNHFREILE-SLSKCSS 186 (528)
Q Consensus 156 ----------------------------------------------~~~~~l--~~L~~L~l~~n~~~~~~~-~~~~l~~ 186 (528)
..+.++ ++|++|++++|.+..+++ .+..+++
T Consensus 194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273 (680)
T ss_dssp SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc
Confidence 222222 236667777776666544 5666667
Q ss_pred CCEEEccCCccCccCCc---------------------------------cccCCCCCCeeecCCceeeccCcccccCCC
Q 038407 187 LEGLYLSDNNLSGKIPR---------------------------------WLGNLSMLQHIILPENHFEGPIPMEFCQLD 233 (528)
Q Consensus 187 L~~L~L~~n~l~~~~~~---------------------------------~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~ 233 (528)
|++|++++|.+.+..+. .|..+++|++|++++|.+++..+..|.+++
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 353 (680)
T 1ziw_A 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353 (680)
T ss_dssp CCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT
T ss_pred ccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcccc
Confidence 77777766665543332 344566777777788888877777777777
Q ss_pred CCCEEEcccCc----------------------------ccccccchhhhccccceeeeccCcccccCc-ccccCCCCCC
Q 038407 234 SLQILNISDNN----------------------------ISGIYHHASILSLSKDQLVLAHNNFEGEVP-IQLCQLNKLQ 284 (528)
Q Consensus 234 ~L~~L~L~~n~----------------------------l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~-~~l~~l~~L~ 284 (528)
+|++|++++|. +.++.+..+.....+++|++++|.+.+.++ ..+..+++|+
T Consensus 354 ~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~ 433 (680)
T 1ziw_A 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433 (680)
T ss_dssp TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC
T ss_pred CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccccc
Confidence 77777666553 333333333334455889999998887655 6788888999
Q ss_pred EEEccCCcCCcCCCCCCcCCc------cccccccCCCCCCCCccccccccccccccccccceeeeeccccccc--ccccc
Q 038407 285 LIDLSNNILSGHIPPCLDNTT------LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY--RGRVI 356 (528)
Q Consensus 285 ~L~ls~n~l~~~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 356 (528)
.|++++|++.+..+..+...+ +...........+.. +. .......+.+..+.+.... ....+
T Consensus 434 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~-------~~---~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-------FQ---PLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT-------TT---TCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred EEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc-------cc---cCCCCCEEECCCCCCCcCChhhhccc
Confidence 999998887765554443322 111111110000000 00 0000111112222111111 11236
Q ss_pred CcccEEECCCCcCccCCC--------hhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccC
Q 038407 357 SYLSELDLSYNKLIGQIP--------PQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVEL 428 (528)
Q Consensus 357 ~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 428 (528)
++|++|++++|.+++..+ ..|.++++|+.|+|++|+++.+.+..|.++++|++|+|++|+++++.+..|..+
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence 789999999999985422 237889999999999999997666789999999999999999998777788999
Q ss_pred CCCCEEEccCCCCccCCCCCCc-ccCCCCcCcccCCCCCCCCCC
Q 038407 429 NTLAVFNVAHNNLSGKIPEWTA-QFATFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 429 ~~L~~L~ls~N~l~~~~p~~~~-~~~~l~~l~l~~Np~~c~~~l 471 (528)
++|++|++++|++++..|..+. .+++|+.+++++|||.|+|+.
T Consensus 584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999999988777665 689999999999999999985
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-46 Score=389.92 Aligned_cols=424 Identities=21% Similarity=0.228 Sum_probs=254.6
Q ss_pred CchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhh
Q 038407 7 SPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGD 86 (528)
Q Consensus 7 ~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 86 (528)
.+.+|.++++|++|+|++|+++ .++...|.++++|++|+|++|.+++..+..|.++++|++|++++|.++ .++...+.
T Consensus 44 ~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~ 121 (570)
T 2z63_A 44 GSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIG 121 (570)
T ss_dssp CTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCT
T ss_pred ChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCcccc
Confidence 3445556666666666666555 233333455666666666666665555555666666666666666555 33332222
Q ss_pred cCCCCceeeccCCcCcc-cCCccccCCCCCCEEEccCCcccccCChhhhhCCCCC----CEEEccCCcCcccCCccCCCC
Q 038407 87 FLPSLKYFNISMNAFDS-SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDL----EYLLLSNNSLEGHLFPRNFNL 161 (528)
Q Consensus 87 ~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l 161 (528)
.+++|++|++++|.+++ ..|..|.++++|++|++++|.++ .++...+..+++| ++|++++|.+++..+..+...
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~ 200 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccCCCCceecCHHHhccC
Confidence 35566666666665554 23555666666666666666555 3332222234444 455555555544333222222
Q ss_pred CCCCEEEccCCcC----------------------------------------------------------Cc-cCcccC
Q 038407 162 TNLRRLQLDGNHF----------------------------------------------------------RE-ILESLS 182 (528)
Q Consensus 162 ~~L~~L~l~~n~~----------------------------------------------------------~~-~~~~~~ 182 (528)
+|++|++++|.. .. .+..+.
T Consensus 201 -~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~ 279 (570)
T 2z63_A 201 -RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279 (570)
T ss_dssp -EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG
T ss_pred -cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc
Confidence 344444333310 00 011234
Q ss_pred CCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhcccccee
Q 038407 183 KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQL 262 (528)
Q Consensus 183 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 262 (528)
.+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. .....+++|
T Consensus 280 ~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L 352 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFL 352 (570)
T ss_dssp GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEE
T ss_pred CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEE
Confidence 4566777777777666 456566666 6677777666665 3332 2445555555555555443322 111223555
Q ss_pred eeccCcccccC--cccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccce
Q 038407 263 VLAHNNFEGEV--PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETF 340 (528)
Q Consensus 263 ~L~~n~l~~~~--~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (528)
++++|.+++.. +..+..+++|+.|++++|.+.+..+. +...+... .+
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~------------------------------~L 401 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE------------------------------HL 401 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCC------------------------------EE
T ss_pred eCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCC------------------------------EE
Confidence 55555554332 34455555555555555554432111 11111000 00
Q ss_pred eeeecccc---ccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccc-ccCCccccCCCCCCeeeCcCCc
Q 038407 341 KFTTKNIA---YTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT-GSIPSTFSNLKHIKSLDLSYNK 416 (528)
Q Consensus 341 ~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~ 416 (528)
.+..+.+. .......+++|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|+
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 00000000 0000122568999999999999889999999999999999999998 5789999999999999999999
Q ss_pred CcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407 417 LDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP 472 (528)
Q Consensus 417 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~ 472 (528)
+++..|..+..+++|++|++++|++++..|..+..+++|+.+++++||+.|+|+..
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99998999999999999999999999998888889999999999999999998853
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.2e-47 Score=398.10 Aligned_cols=363 Identities=16% Similarity=0.220 Sum_probs=310.8
Q ss_pred CCCccccCcCccCCCCCCEEEccCCcCccc-----------------cChhhh--hcCCCCceeeccCCcCcccCCcccc
Q 038407 50 NSLPGLFLLPIHCHKSLMLLDVSNNNLQGH-----------------IPVKIG--DFLPSLKYFNISMNAFDSSIPTSFG 110 (528)
Q Consensus 50 n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-----------------~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~ 110 (528)
|++++ +|..+.++++|++|++++|.+++. +|..+. . +++|++|++++|.+.+.+|..|.
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc-cCCCCEEEecCCcCCccChHHHh
Confidence 46666 788899999999999999999964 888877 6 88999999999999999999999
Q ss_pred CCCCCCEEEccCCc-ccc-cCChhhhh-----CCCCCCEEEccCCcCcccCCc--cCCCCCCCCEEEccCCcCC-ccCcc
Q 038407 111 NMNFLISLDLSNNQ-LTG-EIPEHLAM-----GCVDLEYLLLSNNSLEGHLFP--RNFNLTNLRRLQLDGNHFR-EILES 180 (528)
Q Consensus 111 ~l~~L~~L~l~~n~-l~~-~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~-~~~~~ 180 (528)
++++|++|++++|+ +++ .+|..+.. .+++|++|++++|.++ .+|. .+..+++|++|++++|.+. .++ .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 99999999999998 887 78887652 2389999999999999 6777 8999999999999999999 666 8
Q ss_pred cCCCCCCCEEEccCCccCccCCccccCCCC-CCeeecCCceeeccCcccccCCC--CCCEEEcccCcccccccchhh---
Q 038407 181 LSKCSSLEGLYLSDNNLSGKIPRWLGNLSM-LQHIILPENHFEGPIPMEFCQLD--SLQILNISDNNISGIYHHASI--- 254 (528)
Q Consensus 181 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~i~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~--- 254 (528)
+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++ +|+.|++++|++.+..+..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 888999999999999998 78888999999 999999999999 7787777655 899999999999887665444
Q ss_pred ----hccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccc
Q 038407 255 ----LSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAF 330 (528)
Q Consensus 255 ----~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (528)
....+++|++++|.++...+..+..+++|+.|++++|.++ .+|.........
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~----------------------- 482 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE----------------------- 482 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE-----------------------
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc-----------------------
Confidence 3345589999999999666666778999999999999998 666543221100
Q ss_pred ccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhh--ccccCCEEeCCCccccccCCccccCCCCCC
Q 038407 331 YKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIG--NLTRIQTLNLSYNNLTGSIPSTFSNLKHIK 408 (528)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 408 (528)
....+++|++|++++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+
T Consensus 483 ---------------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 483 ---------------------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp ---------------------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred ---------------------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 0001347999999999999 7888886 99999999999999997 888999999999
Q ss_pred eeeC------cCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCC
Q 038407 409 SLDL------SYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCG 468 (528)
Q Consensus 409 ~L~L------s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~ 468 (528)
+|+| ++|++.+.+|..+..+++|++|++++|++ +.+|..+. ++|+.+++++||+.|-
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 9999 56788889999999999999999999999 57887754 8999999999999983
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-46 Score=396.00 Aligned_cols=355 Identities=20% Similarity=0.218 Sum_probs=231.5
Q ss_pred CChhhhhcCCCCCEEEccCCCCccc-----------------cCcCcc--CCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407 31 FPNWLLENNTKLESNFLLNNSLPGL-----------------FLLPIH--CHKSLMLLDVSNNNLQGHIPVKIGDFLPSL 91 (528)
Q Consensus 31 ~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L 91 (528)
+|.. ++++++|++|+|++|.+++. +|..+. ++++|++|++++|.+.+.+|..+.. +++|
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L 275 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEM 275 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT-CSSC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc-CCCC
Confidence 5554 46677777777777777764 666666 7777777777777766667766655 6677
Q ss_pred ceeeccCCc-Ccc-cCCccccCC------CCCCEEEccCCcccccCCh-hhhhCCCCCCEEEccCCcCcccCCccCCCCC
Q 038407 92 KYFNISMNA-FDS-SIPTSFGNM------NFLISLDLSNNQLTGEIPE-HLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT 162 (528)
Q Consensus 92 ~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 162 (528)
++|++++|+ +++ .+|..+..+ ++|++|++++|+++ .+|. ..+..+++|++|++++|.+++.++ .+..++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 777777776 665 566666554 67777777777776 6665 123467777777777777775555 666677
Q ss_pred CCCEEEccCCcCCccCcccCCCCC-CCEEEccCCccCccCCccccCCC--CCCeeecCCceeeccCccccc-------CC
Q 038407 163 NLRRLQLDGNHFREILESLSKCSS-LEGLYLSDNNLSGKIPRWLGNLS--MLQHIILPENHFEGPIPMEFC-------QL 232 (528)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~i~~~~~~~l~-------~l 232 (528)
+|++|++++|.+..++..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+++..|..+. .+
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 777777777777766666666776 777777777776 5566655543 677777777777766666666 56
Q ss_pred CCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCC-------CCCEEEccCCcCCcCCCCCCcCCc
Q 038407 233 DSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLN-------KLQLIDLSNNILSGHIPPCLDNTT 305 (528)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~-------~L~~L~ls~n~l~~~~p~~~~~~~ 305 (528)
++|++|++++|++++++...+.....+++|++++|+++...+..+.... +|+.|++++|+++ .+|..+...
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~- 510 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT- 510 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT-
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc-
Confidence 6777777777777755443333334447777777777633333333222 6777777777766 444433200
Q ss_pred cccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCE
Q 038407 306 LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQT 385 (528)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 385 (528)
.+++|++|++++|++++ +|..+..+++|+.
T Consensus 511 -------------------------------------------------~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~ 540 (636)
T 4eco_A 511 -------------------------------------------------TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540 (636)
T ss_dssp -------------------------------------------------TCTTCCEEECCSSCCSS-CCCGGGGCSSCCE
T ss_pred -------------------------------------------------cCCCcCEEECCCCCCCC-cChhhhcCCCCCE
Confidence 13467777777777775 6666777777777
Q ss_pred EeC------CCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCC
Q 038407 386 LNL------SYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKI 445 (528)
Q Consensus 386 L~L------s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 445 (528)
|+| ++|++.+.+|..+..+++|++|+|++|++. .+|..+. ++|++|++++|++....
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence 777 445666677777777777777777777773 5565544 57777777777666443
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-45 Score=386.14 Aligned_cols=446 Identities=19% Similarity=0.140 Sum_probs=334.7
Q ss_pred cCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407 6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIG 85 (528)
Q Consensus 6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 85 (528)
.+|..+. +.+++|++++|.+++..|.. |.++++|++|+|++|.+++..|.+|.++++|++|++++|.+.+..|..+.
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTT-STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred cCcCCCC--CcCcEEEccCCccCcCChhH-hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 4555443 37999999999998544544 78999999999999999999999999999999999999999955555555
Q ss_pred hcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCC-hhhhhCCCCCCEEEccCCcCcccCCccCCCCCCC
Q 038407 86 DFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIP-EHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL 164 (528)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 164 (528)
. +++|++|++++|.+++..+..|.++++|++|++++|.++ .++ ... .++++|++|++++|.+++..+..+..+++|
T Consensus 103 ~-l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 103 G-PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp S-CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCTT-CCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred c-cccccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccCcccc-cCCcccCEEEcccCcccccChhhhhhhccc
Confidence 4 899999999999999877888999999999999999998 443 333 359999999999999998777788899999
Q ss_pred C--EEEccCCcCCccCcccCCCC----------------------------------------------------CCCEE
Q 038407 165 R--RLQLDGNHFREILESLSKCS----------------------------------------------------SLEGL 190 (528)
Q Consensus 165 ~--~L~l~~n~~~~~~~~~~~l~----------------------------------------------------~L~~L 190 (528)
+ +|++++|.+..+++...... +|+.|
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 9 89999999988765322211 57788
Q ss_pred EccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCccc
Q 038407 191 YLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFE 270 (528)
Q Consensus 191 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~ 270 (528)
++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+..+.....+++|++++|.+.
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 88889888777888999999999999999999 67888999999999999999999887766666666799999999998
Q ss_pred ccCcc-cccCCCCCCEEEccCCcCCcCC--CCCCcCCcccc-ccccCCCCCCCCccccccccccccccccccceeeeecc
Q 038407 271 GEVPI-QLCQLNKLQLIDLSNNILSGHI--PPCLDNTTLHE-SYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKN 346 (528)
Q Consensus 271 ~~~~~-~l~~l~~L~~L~ls~n~l~~~~--p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (528)
+.++. .+..+++|+.|++++|.+.+.. +..+...+... ..+..... .......+.. ......+.+..+.
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~---l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP----LSLKTEAFKE---CPQLELLDLAFTR 411 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC----EEECTTTTTT---CTTCSEEECTTCC
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC----CcCCHHHhcC---CccCCeEECCCCc
Confidence 66654 5999999999999999998654 44444433111 11111100 0000000000 0011111111111
Q ss_pred ccc---cccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccccc---CCccccCCCCCCeeeCcCCcCccc
Q 038407 347 IAY---TYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGS---IPSTFSNLKHIKSLDLSYNKLDGK 420 (528)
Q Consensus 347 ~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~ 420 (528)
+.. ......+++|++|++++|.+.+..|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++.
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 111 11122356777888888877777777777778888888888877752 235577778888888888888777
Q ss_pred CccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCC
Q 038407 421 IPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFL 466 (528)
Q Consensus 421 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~ 466 (528)
.|..|..+++|++|++++|++++..|..+..++.| .+++++|...
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 77777778888888888888877777777777777 7777777654
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.8e-46 Score=397.50 Aligned_cols=363 Identities=17% Similarity=0.225 Sum_probs=302.0
Q ss_pred CCCccccCcCccCCCCCCEEEccCCcCcc-----------------ccChhhh-hcCCCCceeeccCCcCcccCCccccC
Q 038407 50 NSLPGLFLLPIHCHKSLMLLDVSNNNLQG-----------------HIPVKIG-DFLPSLKYFNISMNAFDSSIPTSFGN 111 (528)
Q Consensus 50 n~~~~~~~~~~~~~~~L~~L~ls~n~l~~-----------------~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~ 111 (528)
|.+++ +|..+.++++|++|++++|.+++ .+|..+. ..+++|++|++++|.+.+.+|..|.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 55555 78889999999999999999996 2888874 23889999999999999999999999
Q ss_pred CCCCCEEEccCCc-ccc-cCChhhh------hCCCCCCEEEccCCcCcccCCc--cCCCCCCCCEEEccCCcCCccCccc
Q 038407 112 MNFLISLDLSNNQ-LTG-EIPEHLA------MGCVDLEYLLLSNNSLEGHLFP--RNFNLTNLRRLQLDGNHFREILESL 181 (528)
Q Consensus 112 l~~L~~L~l~~n~-l~~-~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~ 181 (528)
+++|+.|++++|+ +++ .+|..+. ..+++|++|++++|.++ .+|. .+.++++|++|++++|.+..+| .+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~ 591 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AF 591 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hh
Confidence 9999999999998 886 6887553 23459999999999999 6777 7999999999999999999777 88
Q ss_pred CCCCCCCEEEccCCccCccCCccccCCCC-CCeeecCCceeeccCcccccCCCC--CCEEEcccCcccccccchh-----
Q 038407 182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSM-LQHIILPENHFEGPIPMEFCQLDS--LQILNISDNNISGIYHHAS----- 253 (528)
Q Consensus 182 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~i~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~----- 253 (528)
..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++|++.+..+...
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 99999999999999998 78888999998 999999999999 67877777654 9999999999987654321
Q ss_pred hhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccc
Q 038407 254 ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKE 333 (528)
Q Consensus 254 ~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (528)
.....++.|++++|.+....+..+..+++|+.|++++|.++ .+|..+.......
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~------------------------- 723 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN------------------------- 723 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC-------------------------
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc-------------------------
Confidence 12234589999999999555555568999999999999998 6665543321000
Q ss_pred cccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhh--ccccCCEEeCCCccccccCCccccCCCCCCeee
Q 038407 334 KKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIG--NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLD 411 (528)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 411 (528)
...+++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+
T Consensus 724 -------------------l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 724 -------------------YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFG 782 (876)
T ss_dssp -------------------CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEE
T ss_pred -------------------ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEE
Confidence 001347999999999998 6788886 89999999999999996 688889999999999
Q ss_pred CcC------CcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407 412 LSY------NKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467 (528)
Q Consensus 412 Ls~------N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c 467 (528)
|++ |++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.+++++||+..
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 976 778888999999999999999999999 67887654 689999999998764
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.6e-45 Score=388.71 Aligned_cols=379 Identities=20% Similarity=0.206 Sum_probs=302.3
Q ss_pred CChhhhhcCCCCCEEEccCCCCcc-----------------ccCcCcc--CCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407 31 FPNWLLENNTKLESNFLLNNSLPG-----------------LFLLPIH--CHKSLMLLDVSNNNLQGHIPVKIGDFLPSL 91 (528)
Q Consensus 31 ~~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L 91 (528)
+|.. |.++++|++|+|++|.+++ .+|..+. ++++|++|++++|.+.+.+|..+.. +++|
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L 517 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPEL 517 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCC
Confidence 6665 5789999999999999988 3788877 9999999999999988888877776 8899
Q ss_pred ceeeccCCc-Ccc-cCCccccCC-------CCCCEEEccCCcccccCCh-hhhhCCCCCCEEEccCCcCcccCCccCCCC
Q 038407 92 KYFNISMNA-FDS-SIPTSFGNM-------NFLISLDLSNNQLTGEIPE-HLAMGCVDLEYLLLSNNSLEGHLFPRNFNL 161 (528)
Q Consensus 92 ~~L~L~~n~-i~~-~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 161 (528)
++|++++|+ +++ .+|..+.++ ++|++|++++|.++ .+|. ..+.++++|++|++++|.++ .++ .+..+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 999999998 887 677665554 49999999999998 8887 23458999999999999998 555 88899
Q ss_pred CCCCEEEccCCcCCccCcccCCCCC-CCEEEccCCccCccCCccccCCCC--CCeeecCCceeeccCcccc---c--CCC
Q 038407 162 TNLRRLQLDGNHFREILESLSKCSS-LEGLYLSDNNLSGKIPRWLGNLSM--LQHIILPENHFEGPIPMEF---C--QLD 233 (528)
Q Consensus 162 ~~L~~L~l~~n~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~i~~~~~~~l---~--~l~ 233 (528)
++|+.|++++|.+..++..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|... . .++
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 9999999999999988888888888 999999999988 67877776654 9999999999987655322 2 345
Q ss_pred CCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCC-------CCCCEEEccCCcCCcCCCCCCcCCcc
Q 038407 234 SLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQL-------NKLQLIDLSNNILSGHIPPCLDNTTL 306 (528)
Q Consensus 234 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l-------~~L~~L~ls~n~l~~~~p~~~~~~~~ 306 (528)
+|+.|++++|++..++...+.....++.|++++|++....+..+... ++|+.|++++|+++ .+|..+...
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~-- 750 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT-- 750 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT--
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc--
Confidence 89999999999986654433334456899999999984333333322 38999999999887 556544310
Q ss_pred ccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEE
Q 038407 307 HESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTL 386 (528)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 386 (528)
.+++|+.|+|++|.+++ +|..+..+++|+.|
T Consensus 751 ------------------------------------------------~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 751 ------------------------------------------------TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781 (876)
T ss_dssp ------------------------------------------------TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred ------------------------------------------------cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence 14579999999999986 78888899999999
Q ss_pred eCCC------ccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcc
Q 038407 387 NLSY------NNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSY 460 (528)
Q Consensus 387 ~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l 460 (528)
+|++ |++.+.+|..|.++++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+.....+....+
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L 858 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEE
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheee
Confidence 9976 778888999999999999999999999 57777655 68999999999998776665555555666777
Q ss_pred cCCCCCC--CCC
Q 038407 461 EGNPFLC--GLP 470 (528)
Q Consensus 461 ~~Np~~c--~~~ 470 (528)
.+|++.+ +|+
T Consensus 859 ~~n~~~~I~gC~ 870 (876)
T 4ecn_A 859 LYDKTQDIRGCD 870 (876)
T ss_dssp ECCTTSEEESCG
T ss_pred cCCCccccCCCC
Confidence 7887765 665
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-44 Score=378.09 Aligned_cols=418 Identities=18% Similarity=0.129 Sum_probs=333.2
Q ss_pred cCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407 6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIG 85 (528)
Q Consensus 6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 85 (528)
.+|..+. +++++|+|++|.+++ ++...|.++++|++|++++|.+++..+.+|.++++|++|++++|.+++..|..+.
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred cCCCCCC--CCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 3455443 789999999999984 4444478999999999999999998899999999999999999999954466665
Q ss_pred hcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccc-cCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCC
Q 038407 86 DFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG-EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL 164 (528)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 164 (528)
. +++|++|++++|.+++..+..|+++++|++|++++|.+.+ .+|..+ .++++|++|++++|.+++..+..+..+++|
T Consensus 102 ~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 102 G-LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp T-CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred C-cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 5 8999999999999998888899999999999999999984 467665 589999999999999998777666655544
Q ss_pred C----EEEccCCcCCccCcccC----------------------------------------------------------
Q 038407 165 R----RLQLDGNHFREILESLS---------------------------------------------------------- 182 (528)
Q Consensus 165 ~----~L~l~~n~~~~~~~~~~---------------------------------------------------------- 182 (528)
+ +|++++|.+..+++...
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~ 259 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred ccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence 3 67777777766554322
Q ss_pred -----------------------CCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEE
Q 038407 183 -----------------------KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILN 239 (528)
Q Consensus 183 -----------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 239 (528)
.+++|+.|++++|.+. .++ .+..+++|++|++++|.+ +.+| .+ .+++|+.|+
T Consensus 260 ~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~ 334 (606)
T 3vq2_A 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLT 334 (606)
T ss_dssp GSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEE
T ss_pred hccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceee
Confidence 2344555555555554 233 677788999999999999 4677 45 999999999
Q ss_pred cccCcccccccchhhhccccceeeeccCccccc--CcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCC
Q 038407 240 ISDNNISGIYHHASILSLSKDQLVLAHNNFEGE--VPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPE 317 (528)
Q Consensus 240 L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~ 317 (528)
+++|+..+.. .+.....+++|++++|.+++. .+..+..+++|+.|++++|.+.+ +|..+...+....
T Consensus 335 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~-------- 403 (606)
T 3vq2_A 335 LTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH-------- 403 (606)
T ss_dssp EESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE--------
T ss_pred ccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCe--------
Confidence 9999654433 223334559999999999876 47889999999999999999875 4454444331110
Q ss_pred CCCccccccccccccccccccceeeeecccccc---ccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccc
Q 038407 318 SSETSFVDEGFAFYKEKKIQETFKFTTKNIAYT---YRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT 394 (528)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 394 (528)
+.+..+.+... .....+++|++|++++|.+.+..|..+..+++|++|++++|+++
T Consensus 404 ----------------------L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 404 ----------------------LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp ----------------------EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred ----------------------eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence 01111111000 11123678999999999999889999999999999999999999
Q ss_pred c-cCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCC
Q 038407 395 G-SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFL 466 (528)
Q Consensus 395 ~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~ 466 (528)
+ .+|..|+.+++|++|+|++|++++..|..+..+++|++|++++|++++..|..+..+++|+.+++++|...
T Consensus 462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 7 47899999999999999999999999999999999999999999999998999999999999999999865
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.2e-45 Score=377.29 Aligned_cols=422 Identities=20% Similarity=0.169 Sum_probs=287.2
Q ss_pred cCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407 6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIG 85 (528)
Q Consensus 6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 85 (528)
.+|+.+. ++|++|++++|++++..|.. |.++++|++|++++|.+++..+.+|.++++|++|++++|.++ .++...+
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 94 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWF 94 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHH
T ss_pred cccccCC--CCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHh
Confidence 4555443 79999999999998555554 689999999999999999988899999999999999999999 5555544
Q ss_pred hcCCCCceeeccCCcCccc-CCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCC
Q 038407 86 DFLPSLKYFNISMNAFDSS-IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL 164 (528)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 164 (528)
..+++|++|++++|.+++. .|..+.++++|++|++++|.+.+.+|...+.++++|++|++++|.+++..+..+..+++|
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 4589999999999999863 567899999999999999985557876666789999999999999998888888877777
Q ss_pred CEEEccCCcCCccCcc-cCCCCCCCEEEccCCccCccC--C-c----------------------------cccCCCCCC
Q 038407 165 RRLQLDGNHFREILES-LSKCSSLEGLYLSDNNLSGKI--P-R----------------------------WLGNLSMLQ 212 (528)
Q Consensus 165 ~~L~l~~n~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~--~-~----------------------------~l~~l~~L~ 212 (528)
++|++++|.+..++.. +..+++|++|++++|.+.+.. + . .+..+++|+
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 7777777776655442 234666677777766665421 0 0 111223333
Q ss_pred eeecCCceeeccCc-----------------------------------ccccCCCCCCEEEcccCcccccccchhhhcc
Q 038407 213 HIILPENHFEGPIP-----------------------------------MEFCQLDSLQILNISDNNISGIYHHASILSL 257 (528)
Q Consensus 213 ~L~L~~n~i~~~~~-----------------------------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 257 (528)
.+++++|.+.+... ..+....+|+.|++++|++..++...+....
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~ 334 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCT
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCc
Confidence 33333333322100 0011123556666666665544322212233
Q ss_pred ccceeeeccCcccccCc---ccccCCCCCCEEEccCCcCCcCCC--CCCcCCccccccccCCCCCCCCcccccccccccc
Q 038407 258 SKDQLVLAHNNFEGEVP---IQLCQLNKLQLIDLSNNILSGHIP--PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332 (528)
Q Consensus 258 ~~~~L~L~~n~l~~~~~---~~l~~l~~L~~L~ls~n~l~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (528)
.+++|++++|++.+..| ..+..+++|+.|++++|++++..+ ..+...+...
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~------------------------ 390 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT------------------------ 390 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC------------------------
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC------------------------
Confidence 34666666666655442 224555666666666665542110 0011110000
Q ss_pred ccccccceeeeecccc-ccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeee
Q 038407 333 EKKIQETFKFTTKNIA-YTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLD 411 (528)
Q Consensus 333 ~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 411 (528)
.+.+..+.+. .......+++|++|++++|.++ .+|..+ .++|++|++++|++++.+ ..+++|++|+
T Consensus 391 ------~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~ 457 (549)
T 2z81_A 391 ------SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELY 457 (549)
T ss_dssp ------EEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEE
T ss_pred ------EEECCCCCCccCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEE
Confidence 0000000000 0000012457999999999987 344433 268999999999998643 5789999999
Q ss_pred CcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407 412 LSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470 (528)
Q Consensus 412 Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~ 470 (528)
|++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.+++++|||.|+|+
T Consensus 458 Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 458 ISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999 5665 5689999999999999999999888899999999999999999997
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.2e-45 Score=376.41 Aligned_cols=419 Identities=22% Similarity=0.239 Sum_probs=311.8
Q ss_pred cCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407 6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIG 85 (528)
Q Consensus 6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 85 (528)
.+|..+. ++|++|++++|.++ .++...|.++++|++|++++|.+++..|..|.++++|++|++++|+++ .+|..
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 87 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-- 87 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--
T ss_pred ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--
Confidence 4676655 89999999999998 455445789999999999999999988999999999999999999999 78776
Q ss_pred hcCCCCceeeccCCcCcc-cCCccccCCCCCCEEEccCCcccccCChhhhhCCCCC--CEEEccCCcC--cccCCccCCC
Q 038407 86 DFLPSLKYFNISMNAFDS-SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDL--EYLLLSNNSL--EGHLFPRNFN 160 (528)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~ 160 (528)
.+++|++|++++|.+++ ..|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..+..+..
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccc
Confidence 48999999999999987 468899999999999999999874 223467788 9999999998 5555555544
Q ss_pred --------------------------CCCCCEEEccCCc-------CCccCcccCCCCCCCEEEccCCccCccCCcccc-
Q 038407 161 --------------------------LTNLRRLQLDGNH-------FREILESLSKCSSLEGLYLSDNNLSGKIPRWLG- 206 (528)
Q Consensus 161 --------------------------l~~L~~L~l~~n~-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~- 206 (528)
+++|+.|++++|. +.+..+.+..+++|+.|++++|.+.+.....+.
T Consensus 163 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 242 (520)
T 2z7x_B 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242 (520)
T ss_dssp CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred cccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHH
Confidence 4555556666554 332233556666777777766665532211111
Q ss_pred --CCCCCCeeecCCceeeccCcccc-----cCCCCCCEEEcccCcccccccchhhhc---cccceeeeccCcccccCccc
Q 038407 207 --NLSMLQHIILPENHFEGPIPMEF-----CQLDSLQILNISDNNISGIYHHASILS---LSKDQLVLAHNNFEGEVPIQ 276 (528)
Q Consensus 207 --~l~~L~~L~L~~n~i~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~~~~L~L~~n~l~~~~~~~ 276 (528)
..++|++|++++|++++.+|..+ ..+++|+.+++++|.+ .++....... ...+.|++++|.+.... .
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~ 319 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--C 319 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--C
T ss_pred HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--c
Confidence 13578888888888887788777 7888888888888887 3332222211 34577888888775432 1
Q ss_pred ccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccc----ccc
Q 038407 277 LCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY----TYR 352 (528)
Q Consensus 277 l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 352 (528)
+..+++|++|++++|.+++..|..+...+.... +.+..+.+.. ...
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~------------------------------L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELET------------------------------LILQMNQLKELSKIAEM 369 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE------------------------------EECCSSCCCBHHHHHHH
T ss_pred hhhCCcccEEEeECCccChhhhhhhccCCCCCE------------------------------EEccCCccCccccchHH
Confidence 257788888888888887767766654431110 0111111100 000
Q ss_pred ccccCcccEEECCCCcCccCCCh-hhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCC
Q 038407 353 GRVISYLSELDLSYNKLIGQIPP-QIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTL 431 (528)
Q Consensus 353 ~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 431 (528)
...+++|++|++++|.+.+.+|. .+..+++|+.|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|
T Consensus 370 ~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L 446 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL 446 (520)
T ss_dssp HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCC
Confidence 12367899999999999974555 488899999999999999887777664 79999999999999 778878899999
Q ss_pred CEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407 432 AVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 432 ~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l 471 (528)
++|++++|++++..+..+..+++|+.+++++||+.|+|++
T Consensus 447 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9999999999954444477899999999999999999875
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-43 Score=375.51 Aligned_cols=456 Identities=21% Similarity=0.220 Sum_probs=309.3
Q ss_pred cCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhh
Q 038407 6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIG 85 (528)
Q Consensus 6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 85 (528)
.+|..+. +++++|+|++|.++ .++...|.++++|++|++++|.+++..+.++.++++|++|++++|.++ .+|...+
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~ 93 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTF 93 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccccccC--CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhh
Confidence 3555443 79999999999998 566655799999999999999999988999999999999999999999 7777655
Q ss_pred hcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCC--CCCC
Q 038407 86 DFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNF--NLTN 163 (528)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~ 163 (528)
..+++|++|++++|.+++..+..|+++++|++|++++|.+++..+. .+.++++|++|++++|.+++..+..+. .+++
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 5589999999999999988888999999999999999999854444 445899999999999999875555443 5689
Q ss_pred CCEEEccCCcCCccCc-ccCC---------------------------CCCCCEEEccCCccCccCCccccCCCC--CCe
Q 038407 164 LRRLQLDGNHFREILE-SLSK---------------------------CSSLEGLYLSDNNLSGKIPRWLGNLSM--LQH 213 (528)
Q Consensus 164 L~~L~l~~n~~~~~~~-~~~~---------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~ 213 (528)
|++|++++|.+.++++ .+.. .++|+.|++++|.+.+..+..+..++. |++
T Consensus 173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence 9999999999887755 3322 256777888888887777777777654 888
Q ss_pred eecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccc-----cCc----ccccCCCCCC
Q 038407 214 IILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEG-----EVP----IQLCQLNKLQ 284 (528)
Q Consensus 214 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~-----~~~----~~l~~l~~L~ 284 (528)
|++++|.+++..+..|..+++|++|++++|++.+..+..+.....++++++++|...+ .+| ..+..+++|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 8888888887777788888888888888888877766555444445666666654332 112 2556666677
Q ss_pred EEEccCCcCCcCCCCCCcCCccccc-cccCCCCC------CCCc-----ccccc-----cc-----ccccccccccceee
Q 038407 285 LIDLSNNILSGHIPPCLDNTTLHES-YIDTSSPE------SSET-----SFVDE-----GF-----AFYKEKKIQETFKF 342 (528)
Q Consensus 285 ~L~ls~n~l~~~~p~~~~~~~~~~~-~~~~~~~~------~~~~-----~~~~~-----~~-----~~~~~~~~~~~~~~ 342 (528)
.|++++|.+.+..+..+...+.... .+...... .... .+... .+ ...........+.+
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence 7777777666555544444321111 00000000 0000 00000 00 00000001111112
Q ss_pred eecccccc---ccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccc--ccCCccccCCCCCCeeeCcCCcC
Q 038407 343 TTKNIAYT---YRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT--GSIPSTFSNLKHIKSLDLSYNKL 417 (528)
Q Consensus 343 ~~~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l 417 (528)
..+.+... .....+++|++|++++|++.+..+..|..+++|+.|++++|.+. +..|..|.++++|++|+|++|++
T Consensus 413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence 21111110 11123456666666666666666666666667777777766665 45667777777777778877777
Q ss_pred cccCccccccCCCCCEEEccCCCCccCCC--------CCCcccCCCCcCcccCCCCC
Q 038407 418 DGKIPLQLVELNTLAVFNVAHNNLSGKIP--------EWTAQFATFNESSYEGNPFL 466 (528)
Q Consensus 418 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p--------~~~~~~~~l~~l~l~~Np~~ 466 (528)
+++.+..|..+++|++|++++|++++..+ ..+..+++|+.+++++|...
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence 77666677777778888888877765422 22456677777777777654
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-43 Score=380.75 Aligned_cols=452 Identities=19% Similarity=0.104 Sum_probs=345.3
Q ss_pred CCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCcccc-CcCccCCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407 13 HQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLF-LLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSL 91 (528)
Q Consensus 13 ~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L 91 (528)
-.+++++|+|++|.+++..|.. |.++++|++|+|++|...+.+ +.+|.++++|++|++++|.+.+..|..+.. +++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS-CSSC
T ss_pred CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC-Cccc
Confidence 4589999999999998655555 689999999999999665554 788999999999999999999555655555 8999
Q ss_pred ceeeccCCcCcccCCcc--ccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCC--CCCCEE
Q 038407 92 KYFNISMNAFDSSIPTS--FGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNL--TNLRRL 167 (528)
Q Consensus 92 ~~L~L~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L 167 (528)
++|++++|.+++..+.. |.++++|++|++++|.+++..+...+.++++|++|++++|.+++..+..+..+ ++|+.|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 99999999998765554 99999999999999999855554556789999999999999998777888776 899999
Q ss_pred EccCCcCCccCc-ccCCCCC------CCEEEccCCccCccCCccccC---------------------------------
Q 038407 168 QLDGNHFREILE-SLSKCSS------LEGLYLSDNNLSGKIPRWLGN--------------------------------- 207 (528)
Q Consensus 168 ~l~~n~~~~~~~-~~~~l~~------L~~L~L~~n~l~~~~~~~l~~--------------------------------- 207 (528)
++++|.+....+ .+..+++ |+.|++++|.+.+..+..+..
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 999999887543 4555444 999999999776554443321
Q ss_pred -----CCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCC
Q 038407 208 -----LSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282 (528)
Q Consensus 208 -----l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~ 282 (528)
.++|++|++++|.+.+..+..|..+++|+.|++++|++.++.+..+.....+++|++++|.+.+..+..|..+++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 268999999999999888999999999999999999999988876666667799999999999998999999999
Q ss_pred CCEEEccCCcCCcCCCCCCcCCcccc-ccccCCCCCCC--Ccccccccccccccc------ccccceeeeeccccc---c
Q 038407 283 LQLIDLSNNILSGHIPPCLDNTTLHE-SYIDTSSPESS--ETSFVDEGFAFYKEK------KIQETFKFTTKNIAY---T 350 (528)
Q Consensus 283 L~~L~ls~n~l~~~~p~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~ 350 (528)
|+.|++++|.+.+..+..+...+... ..+..+..... ...+....+...... .....+.+..+.+.. .
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~ 419 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTH
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchh
Confidence 99999999999876666665543211 11111111100 000000000000000 000111111111111 1
Q ss_pred ccccccCcccEEECCCCcCccCCCh-hhhccccCCEEeCCCcccc-----ccCCccccCCCCCCeeeCcCCcCcccCccc
Q 038407 351 YRGRVISYLSELDLSYNKLIGQIPP-QIGNLTRIQTLNLSYNNLT-----GSIPSTFSNLKHIKSLDLSYNKLDGKIPLQ 424 (528)
Q Consensus 351 ~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 424 (528)
+....+++|++|++++|.+++..+. .+..+++|+.|+|++|.++ +..+..|.++++|++|+|++|++++..|..
T Consensus 420 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 499 (844)
T 3j0a_A 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499 (844)
T ss_dssp HHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred hhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhH
Confidence 1112467899999999998854433 3566889999999999987 344567899999999999999999999999
Q ss_pred cccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCC
Q 038407 425 LVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCG 468 (528)
Q Consensus 425 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~ 468 (528)
|..+++|++|+|++|++++..|..+. ++|+.+++++|....-
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 500 FSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP 541 (844)
T ss_dssp SSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred ccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence 99999999999999999987777654 8899999999987653
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-43 Score=358.93 Aligned_cols=384 Identities=21% Similarity=0.226 Sum_probs=310.2
Q ss_pred CCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeec
Q 038407 17 LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNI 96 (528)
Q Consensus 17 L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L 96 (528)
-+.++.++++++ .+|. + .++|++|+|++|.+++..+..+.++++|++|++++|.+.+.++...+..+++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 346777888776 7776 2 3789999999999998888889999999999999998876776665556889999999
Q ss_pred cCCcCcccCCccccCCCCCCEEEccCCcccccCCh-hhhhCCCCCCEEEccCCcCcccCCcc-CCCCCCCCEEEccCCcC
Q 038407 97 SMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE-HLAMGCVDLEYLLLSNNSLEGHLFPR-NFNLTNLRRLQLDGNHF 174 (528)
Q Consensus 97 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~ 174 (528)
++|.+++..|..|.++++|++|++++|.+++.++. ..+..+++|++|++++|.+++..+.. +.++++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 99999988889999999999999999998754433 23457889999999999998765655 77889999999999998
Q ss_pred CccCc-ccCCC--CCCCEEEccCCccCccCCcc--------ccCCCCCCeeecCCceeeccCcccccCC---CCCCEEEc
Q 038407 175 REILE-SLSKC--SSLEGLYLSDNNLSGKIPRW--------LGNLSMLQHIILPENHFEGPIPMEFCQL---DSLQILNI 240 (528)
Q Consensus 175 ~~~~~-~~~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~i~~~~~~~l~~l---~~L~~L~L 240 (528)
....+ .+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++++..+..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 87755 44443 67889999999887554433 2356789999999999887777665543 78899999
Q ss_pred ccCcccccccchhhhccccceeeeccCcccccCccccc--CCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCC
Q 038407 241 SDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLC--QLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPES 318 (528)
Q Consensus 241 ~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~--~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~ 318 (528)
++|.+.+.... .+.+....+..+. ..++|+.|++++|.+.+..|..+..
T Consensus 247 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------------- 297 (455)
T 3v47_A 247 SNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH--------------- 297 (455)
T ss_dssp TTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT---------------
T ss_pred ccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhccc---------------
Confidence 98876543211 1112222222222 2468999999999998777766654
Q ss_pred CCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCC
Q 038407 319 SETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIP 398 (528)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 398 (528)
+++|++|++++|.+.+..|..|..+++|+.|+|++|++++..|
T Consensus 298 -------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 298 -------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp -------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred -------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 3479999999999998888899999999999999999998888
Q ss_pred ccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407 399 STFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 399 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l 471 (528)
..|+++++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|+.+++++||+.|+||.
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999999999999999999988899999999999999999999987777778899999999999999999984
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-42 Score=367.27 Aligned_cols=423 Identities=17% Similarity=0.131 Sum_probs=309.6
Q ss_pred CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCcee
Q 038407 15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYF 94 (528)
Q Consensus 15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L 94 (528)
+++++|+|++|+++ .+|+..|.++++|++|+|++|++++..+.+|.++++|++|+|++|+++ .+|...+..+++|++|
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence 47999999999998 666655899999999999999999888889999999999999999998 7777777779999999
Q ss_pred eccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCC----CCEEEcc
Q 038407 95 NISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTN----LRRLQLD 170 (528)
Q Consensus 95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----L~~L~l~ 170 (528)
++++|++++..+..|+++++|++|++++|.+++.-....+..+++|++|++++|++++..+..+..+.+ ...++++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 999999998888889999999999999999974222334457999999999999998766655543332 2345565
Q ss_pred CCcCCccCcccCCC------------------------------------------------------------------
Q 038407 171 GNHFREILESLSKC------------------------------------------------------------------ 184 (528)
Q Consensus 171 ~n~~~~~~~~~~~l------------------------------------------------------------------ 184 (528)
.|.+..+++.....
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 55554433211111
Q ss_pred ----------------CCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCc-------------------ccc
Q 038407 185 ----------------SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIP-------------------MEF 229 (528)
Q Consensus 185 ----------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-------------------~~l 229 (528)
.+++.+++.++.+... ..+.....++.|++.+|.+....+ ...
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 1222222222222111 123334556677776666543222 123
Q ss_pred cCCCCCCEEEcccCcccccc--cchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCC-CcCCcc
Q 038407 230 CQLDSLQILNISDNNISGIY--HHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPC-LDNTTL 306 (528)
Q Consensus 230 ~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~~~~ 306 (528)
..+++|+.+++++|.+.... +.........+.+++..+..... +..+..+++|+.++++.+......+.. +.....
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccc
Confidence 35788999999999886543 33334444558888888877643 456778888999998888766544322 221110
Q ss_pred ccccccCCCCCCCCccccccccccccccccccceeeeecccc--ccccccccCcccEEECCCCcCc-cCCChhhhccccC
Q 038407 307 HESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA--YTYRGRVISYLSELDLSYNKLI-GQIPPQIGNLTRI 383 (528)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L 383 (528)
.. ......+... .......++.++.|++++|.+. +..|..|..+++|
T Consensus 447 l~------------------------------~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 447 LI------------------------------YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp CC------------------------------EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cc------------------------------cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence 00 0000000000 0011123568999999999754 4578889999999
Q ss_pred CEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCccc-CCCCcCcccC
Q 038407 384 QTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQF-ATFNESSYEG 462 (528)
Q Consensus 384 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~-~~l~~l~l~~ 462 (528)
++|+|++|++++..|..|+++++|++|+|++|+|++..|..|..+++|++|++++|++++..|..+..+ .+|+.+++++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 999999999999999999999999999999999999999999999999999999999999999998887 6899999999
Q ss_pred CCCCCCCCCC
Q 038407 463 NPFLCGLPLP 472 (528)
Q Consensus 463 Np~~c~~~l~ 472 (528)
|||.|+|++.
T Consensus 577 Np~~C~C~~~ 586 (635)
T 4g8a_A 577 NDFACTCEHQ 586 (635)
T ss_dssp CCBCCSGGGH
T ss_pred CCCcccCCcH
Confidence 9999999753
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=361.94 Aligned_cols=413 Identities=17% Similarity=0.139 Sum_probs=333.2
Q ss_pred CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCcee
Q 038407 15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYF 94 (528)
Q Consensus 15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L 94 (528)
+++++|++++|++++ ++...|.++++|++|++++|.+++..+.+|.++++|++|++++|.++ .++...+..+++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence 579999999999984 44444789999999999999999988889999999999999999998 5554444458999999
Q ss_pred eccCCcCcccCCccccCCCCCCEEEccCCcccc-cCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCC----CEEEc
Q 038407 95 NISMNAFDSSIPTSFGNMNFLISLDLSNNQLTG-EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL----RRLQL 169 (528)
Q Consensus 95 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l 169 (528)
++++|.+++..+..|+++++|++|++++|.+++ .+|..+ .++++|++|++++|.+++..+..+..+++| +.|++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 999999997777689999999999999999984 357665 579999999999999998777778877787 89999
Q ss_pred cCCcCCccCcccCCCCCCCEEEccCC------------------------------------------------------
Q 038407 170 DGNHFREILESLSKCSSLEGLYLSDN------------------------------------------------------ 195 (528)
Q Consensus 170 ~~n~~~~~~~~~~~l~~L~~L~L~~n------------------------------------------------------ 195 (528)
++|.+..+++......+|+.|++++|
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 99999988773333347888888776
Q ss_pred ----ccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccc
Q 038407 196 ----NLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEG 271 (528)
Q Consensus 196 ----~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~ 271 (528)
.+.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+..++.. .....+++++++|.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~---~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBC---BCSSCCEEEEESCBSCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcc---cccccCEEeCcCCcccc
Confidence 223345566778899999999999998 577788888 999999999999865442 23345899999999887
Q ss_pred cCcccccCCCCCCEEEccCCcCCcCC--CCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccc
Q 038407 272 EVPIQLCQLNKLQLIDLSNNILSGHI--PPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY 349 (528)
Q Consensus 272 ~~~~~l~~l~~L~~L~ls~n~l~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (528)
..+. ..+++|+.|++++|.+++.. |..+...+.. ..+.+..+.+..
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L------------------------------~~L~l~~n~l~~ 387 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL------------------------------KYLDLSFNGVIT 387 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC------------------------------CEEECCSCSEEE
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCcc------------------------------CEEECCCCcccc
Confidence 7665 78999999999999987432 2222211100 000111100000
Q ss_pred -cccccccCcccEEECCCCcCccCCC-hhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCc-ccCccccc
Q 038407 350 -TYRGRVISYLSELDLSYNKLIGQIP-PQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD-GKIPLQLV 426 (528)
Q Consensus 350 -~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~ 426 (528)
......+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..|.++++|++|++++|+++ +.+|..+.
T Consensus 388 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence 0001236789999999999987655 57899999999999999999999999999999999999999998 57889999
Q ss_pred cCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407 427 ELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467 (528)
Q Consensus 427 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c 467 (528)
.+++|++|++++|++++..|..+..+++|+.+++++|....
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 99999999999999999999999999999999999997654
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-41 Score=353.71 Aligned_cols=412 Identities=21% Similarity=0.211 Sum_probs=228.9
Q ss_pred CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCcee
Q 038407 15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYF 94 (528)
Q Consensus 15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L 94 (528)
++|++|++++|.++ .++...|.++++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|.. .+++|++|
T Consensus 52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence 55666666666665 333333456666666666666666555556666666666666666665 45544 25566666
Q ss_pred eccCCcCccc-CCccccCCCCCCEEEccCCcccccCChhhhhCCCCC--CEEEccCCcC--cccCCccCCCCC-CCCEEE
Q 038407 95 NISMNAFDSS-IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDL--EYLLLSNNSL--EGHLFPRNFNLT-NLRRLQ 168 (528)
Q Consensus 95 ~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~-~L~~L~ 168 (528)
++++|++++. .|..|+++++|++|++++|.+++ .. +..+++| ++|++++|.+ ++..+..+..+. ..-.++
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 6666666542 24556666666666666665552 11 1223333 6666666655 433333333221 000112
Q ss_pred ccCCcCCccCc--ccCCCCCCCEEEccCC----------------------------ccCcc----CCccccCCCCCCee
Q 038407 169 LDGNHFREILE--SLSKCSSLEGLYLSDN----------------------------NLSGK----IPRWLGNLSMLQHI 214 (528)
Q Consensus 169 l~~n~~~~~~~--~~~~l~~L~~L~L~~n----------------------------~l~~~----~~~~l~~l~~L~~L 214 (528)
+++|.+..... .+..+++|+.+++++| .+.+. .+.. ...++|++|
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L 281 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYL 281 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEE
Confidence 22222221111 1223334444444443 22211 0111 122477888
Q ss_pred ecCCceeeccCcccc-----cCCCCCCEEEcccCcccccccchh---hhccccceeeeccCcccccCcccccCCCCCCEE
Q 038407 215 ILPENHFEGPIPMEF-----CQLDSLQILNISDNNISGIYHHAS---ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLI 286 (528)
Q Consensus 215 ~L~~n~i~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L 286 (528)
++++|.+++.+|..+ ..++.|+.++++.+.+ .++.... ......++|++++|.+.... ....+++|+.|
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 358 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEE
Confidence 888888877777655 4444444444444443 1111111 01122344555555443211 11344455555
Q ss_pred EccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccc----cccccccCcccEE
Q 038407 287 DLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY----TYRGRVISYLSEL 362 (528)
Q Consensus 287 ~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~L 362 (528)
++++|.+++..|..+...+.... +.+..+.+.. ......+++|++|
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~------------------------------L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQT------------------------------LILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCE------------------------------EECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred ECCCCccccchhhhhcccCCCCE------------------------------EECCCCCcCCcccchhhhcCCCCCCEE
Confidence 55555554444443333221000 0000000000 0001225689999
Q ss_pred ECCCCcCccCCC-hhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCC
Q 038407 363 DLSYNKLIGQIP-PQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNL 441 (528)
Q Consensus 363 ~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l 441 (528)
++++|.+++.+| ..+..+++|+.|++++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|++|++++|++
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC
Confidence 999999997455 4588899999999999999877766554 79999999999999 6777777999999999999999
Q ss_pred ccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407 442 SGKIPEWTAQFATFNESSYEGNPFLCGLPLP 472 (528)
Q Consensus 442 ~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~ 472 (528)
++..+..+..+++|+.+++++|||.|+|++.
T Consensus 486 ~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp CCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred CCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 9544444888999999999999999998653
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.1e-41 Score=340.21 Aligned_cols=365 Identities=17% Similarity=0.169 Sum_probs=301.8
Q ss_pred CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCcccc-CcCccCCCCCCEEEccCCcCccccChhhhhcCCCCce
Q 038407 15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLF-LLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKY 93 (528)
Q Consensus 15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 93 (528)
++|++|+|++|.+++..|.. |.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+.. +++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCE
T ss_pred CccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCE
Confidence 78999999999998655554 689999999999999997554 678999999999999999998555666655 899999
Q ss_pred eeccCCcCcccCCc--cccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCC--CCCCEEEc
Q 038407 94 FNISMNAFDSSIPT--SFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNL--TNLRRLQL 169 (528)
Q Consensus 94 L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l 169 (528)
|++++|.+++..+. .|.++++|++|++++|.+++..|..++.++++|++|++++|.+++..+..+..+ .+|+.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 99999999874444 499999999999999999966677766789999999999999998777777655 78999999
Q ss_pred cCCcCCccCcc---------cCCCCCCCEEEccCCccCccCCccccCC---CCCCeeecCCceeeccCcccccCCCCCCE
Q 038407 170 DGNHFREILES---------LSKCSSLEGLYLSDNNLSGKIPRWLGNL---SMLQHIILPENHFEGPIPMEFCQLDSLQI 237 (528)
Q Consensus 170 ~~n~~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 237 (528)
++|.+..+++. +..+++|++|++++|.+.+..+..+... ++|+.|++++|...+....
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------- 257 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---------- 257 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT----------
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc----------
Confidence 99999887652 3466899999999999988777766554 8899999999876532111
Q ss_pred EEcccCcccccccchh--hhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCC
Q 038407 238 LNISDNNISGIYHHAS--ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSS 315 (528)
Q Consensus 238 L~L~~n~l~~~~~~~~--~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~ 315 (528)
.+.+.+.....+ ......+++++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..
T Consensus 258 ----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------ 321 (455)
T 3v47_A 258 ----HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------------ 321 (455)
T ss_dssp ----CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------------
T ss_pred ----hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC------------
Confidence 111111111111 11123477777777777778888999999999999999998776766654
Q ss_pred CCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccc
Q 038407 316 PESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG 395 (528)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 395 (528)
+++|++|++++|.+.+..|..|..+++|++|+|++|++++
T Consensus 322 ----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 322 ----------------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred ----------------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence 3479999999999998888999999999999999999999
Q ss_pred cCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCC
Q 038407 396 SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447 (528)
Q Consensus 396 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~ 447 (528)
..|..|.++++|++|+|++|++++..+..+..+++|++|++++|++++..|.
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9899999999999999999999987777889999999999999999988874
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-40 Score=345.12 Aligned_cols=402 Identities=20% Similarity=0.203 Sum_probs=219.1
Q ss_pred cccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCcc-ccCh
Q 038407 4 VAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQG-HIPV 82 (528)
Q Consensus 4 ~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~ 82 (528)
++..|.+|.++++|++|++++|++++..|. .|.++++|++|++++|.+++..+..+.++++|++|++++|.+++ .+|.
T Consensus 39 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 117 (549)
T 2z81_A 39 TYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117 (549)
T ss_dssp CEECSSTTSSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC
T ss_pred CccChhhhhcCCcccEEECCCCCcCccChh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh
Confidence 344455566666666666666666533322 24556666666666666655555555566666666666665552 1222
Q ss_pred hhhhcCCCCceeeccCCc-CcccCCccccCCCCCCEEEccCCcccc-----------------------cCChhhhhCCC
Q 038407 83 KIGDFLPSLKYFNISMNA-FDSSIPTSFGNMNFLISLDLSNNQLTG-----------------------EIPEHLAMGCV 138 (528)
Q Consensus 83 ~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~~l~ 138 (528)
.+.. +++|++|++++|. +....+..|.++++|++|++++|.+++ .+|...+..++
T Consensus 118 ~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 196 (549)
T 2z81_A 118 LFPN-LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196 (549)
T ss_dssp SCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT
T ss_pred hhhc-cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcc
Confidence 2222 4555555555555 222223445555555555555555543 33333334566
Q ss_pred CCCEEEccCCcCcccC---CccCCCCCCCCEEEccCCcCCccC-----cccCCCCCCCEEEccCCccCcc----------
Q 038407 139 DLEYLLLSNNSLEGHL---FPRNFNLTNLRRLQLDGNHFREIL-----ESLSKCSSLEGLYLSDNNLSGK---------- 200 (528)
Q Consensus 139 ~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~---------- 200 (528)
+|++|++++|.+++.. ......+++|++|++++|.+.+.. ..+..+++|+.+++++|.+.+.
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 276 (549)
T 2z81_A 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276 (549)
T ss_dssp TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence 6777777777666421 111123444555555444432110 0112222333333333322110
Q ss_pred -------------------------CCccccCCCCCCeeecCCceeeccCcccc-cCCCCCCEEEcccCcccccccch--
Q 038407 201 -------------------------IPRWLGNLSMLQHIILPENHFEGPIPMEF-CQLDSLQILNISDNNISGIYHHA-- 252 (528)
Q Consensus 201 -------------------------~~~~l~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~-- 252 (528)
.+..+...++|++|++++|.+. .+|..+ ..+++|++|++++|++.+..+..
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchh
Confidence 0001112345666666666665 334333 35666666666666665533211
Q ss_pred -hhhccccceeeeccCcccccCc--ccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccc
Q 038407 253 -SILSLSKDQLVLAHNNFEGEVP--IQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFA 329 (528)
Q Consensus 253 -~~~~~~~~~L~L~~n~l~~~~~--~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (528)
......+++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+...+...
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~--------------------- 413 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR--------------------- 413 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC---------------------
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccccc---------------------
Confidence 1111233666666666654322 34555666666666666665 3444332221000
Q ss_pred cccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCe
Q 038407 330 FYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKS 409 (528)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 409 (528)
.+.+..+.+.. ..+..+++|++|++++|++++.. ..+++|++|+|++|+++ .+|. ...+++|++
T Consensus 414 ---------~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~ 477 (549)
T 2z81_A 414 ---------FLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLV 477 (549)
T ss_dssp ---------EEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCE
T ss_pred ---------EEECCCCCccc-ccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCE
Confidence 00000000000 00111357999999999998643 57899999999999999 5665 567999999
Q ss_pred eeCcCCcCcccCccccccCCCCCEEEccCCCCccCCC
Q 038407 410 LDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIP 446 (528)
Q Consensus 410 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p 446 (528)
|+|++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 478 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999999888889999999999999999987766
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=330.33 Aligned_cols=318 Identities=23% Similarity=0.224 Sum_probs=155.2
Q ss_pred EEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCC
Q 038407 44 SNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123 (528)
Q Consensus 44 ~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 123 (528)
.++.+++.++. +|..+ .+++++|++++|+++ .++...+..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCSS-CCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-CCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 44444444442 22222 135555555555555 232222222555555555555555555555555555555555555
Q ss_pred cccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCC
Q 038407 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIP 202 (528)
Q Consensus 124 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 202 (528)
.++ .+|...+.++++|++|++++|.++...+..+..+++|++|++++|.+..+.+ .+..+++|++|++++|.+++..+
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 555 4444444455555555555555554444445555555555555555554433 44455555555555555544333
Q ss_pred ccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCC
Q 038407 203 RWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNK 282 (528)
Q Consensus 203 ~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~ 282 (528)
..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+. ++.......+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~------------------------~~~~~~~~~~ 225 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT------------------------MTPNCLYGLN 225 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE------------------------ECTTTTTTCC
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc------------------------cCcccccCcc
Confidence 3444455555555555555444444444444454444444433221 1111222235
Q ss_pred CCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEE
Q 038407 283 LQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSEL 362 (528)
Q Consensus 283 L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 362 (528)
|+.|++++|.+++..+..+.. +++|++|
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L 253 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRH----------------------------------------------------LVYLRFL 253 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTT----------------------------------------------------CTTCCEE
T ss_pred ccEEECcCCcccccCHHHhcC----------------------------------------------------ccccCee
Confidence 555555555544211111111 2345555
Q ss_pred ECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCc
Q 038407 363 DLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442 (528)
Q Consensus 363 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 442 (528)
++++|.+++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 55555555444445555555555555555555555555555555555555555555444444555555555555555554
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.5e-40 Score=337.83 Aligned_cols=422 Identities=17% Similarity=0.144 Sum_probs=300.7
Q ss_pred CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeecc
Q 038407 18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNIS 97 (528)
Q Consensus 18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~ 97 (528)
++|++++|+++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|++++..|..+.. +++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecC
Confidence 68999999998 7887653 89999999999999888888999999999999999999544555555 8999999999
Q ss_pred CCcCcccCCccccCCCCCCEEEccCCcccc-cCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCC--CEEEccCCcC
Q 038407 98 MNAFDSSIPTSFGNMNFLISLDLSNNQLTG-EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNL--RRLQLDGNHF 174 (528)
Q Consensus 98 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~~ 174 (528)
+|+++. +|.. .+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 78 ~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 78 HNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred CCceee-cCcc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 999985 4544 79999999999999984 355555 589999999999999986 456677777 9999999998
Q ss_pred --Ccc-CcccCCCC-CCCEEEccCCccCccCC-ccccCCCCCCeeecCCce-------eeccCcccccCCCCCCEEEccc
Q 038407 175 --REI-LESLSKCS-SLEGLYLSDNNLSGKIP-RWLGNLSMLQHIILPENH-------FEGPIPMEFCQLDSLQILNISD 242 (528)
Q Consensus 175 --~~~-~~~~~~l~-~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-------i~~~~~~~l~~l~~L~~L~L~~ 242 (528)
... +..+..+. ....+++++|.+.+.++ ..+..+++|+.+++++|. +.+.++ .+..+++|+.|++++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 433 33444433 22356777777665443 356778888999988886 665555 678888899999888
Q ss_pred Ccccccccchhh---hccccceeeeccCcccccCcccc-----cCCCCCCEEEccCCcCCcCCCC-CCcC----Cccccc
Q 038407 243 NNISGIYHHASI---LSLSKDQLVLAHNNFEGEVPIQL-----CQLNKLQLIDLSNNILSGHIPP-CLDN----TTLHES 309 (528)
Q Consensus 243 n~l~~~~~~~~~---~~~~~~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~ls~n~l~~~~p~-~~~~----~~~~~~ 309 (528)
|.+.+....... .....++|++++|++.+.+|..+ ..+++|+.+++++|.+ .+|. .+.. ..+...
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence 877654322111 12245888888888888888877 7788888888888877 3441 1100 001111
Q ss_pred cccCCCCCCCCccccccccccccccccccceeeeeccccc--cccccccCcccEEECCCCcCcc--CCChhhhccccCCE
Q 038407 310 YIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY--TYRGRVISYLSELDLSYNKLIG--QIPPQIGNLTRIQT 385 (528)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~ 385 (528)
.+.......... .........+.+..+.+.. ......+++|++|++++|++++ .+|..+..+++|++
T Consensus 308 ~l~~n~l~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 308 TVSGTRMVHMLC---------PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp EEESSCCCCCCC---------CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred EcCCCccccccc---------hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 111111000000 0000001111111111111 1111236788999999998885 45567888899999
Q ss_pred EeCCCccccccCCc-cccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCC
Q 038407 386 LNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNP 464 (528)
Q Consensus 386 L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np 464 (528)
|++++|++++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|+.+++++|.
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCc
Confidence 99999999874454 578889999999999999877776554 68999999999998 677767788999999999987
Q ss_pred CC
Q 038407 465 FL 466 (528)
Q Consensus 465 ~~ 466 (528)
..
T Consensus 456 l~ 457 (520)
T 2z7x_B 456 LK 457 (520)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.9e-38 Score=318.51 Aligned_cols=346 Identities=24% Similarity=0.353 Sum_probs=258.5
Q ss_pred CCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCc
Q 038407 13 HQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLK 92 (528)
Q Consensus 13 ~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~ 92 (528)
.++++++|+++++.+. .+|. +..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. +.. +++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~-l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LAN-LTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GTT-CTTCC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hcC-CCCCC
Confidence 4678999999999887 5775 5789999999999999887654 888999999999999988 4444 444 88999
Q ss_pred eeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCC
Q 038407 93 YFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGN 172 (528)
Q Consensus 93 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 172 (528)
+|++++|.+++..+ +.++++|++|++++|.+. .++. +..+++|++|+++ |.+.+ ...+..+++|++|++++|
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~--~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTD--LKPLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCC--CGGGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccC--chhhccCCCCCEEECcCC
Confidence 99999999886533 888999999999999988 5554 4578999999996 44443 234788899999999999
Q ss_pred cCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccch
Q 038407 173 HFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHA 252 (528)
Q Consensus 173 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 252 (528)
.+..++ .+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+
T Consensus 188 ~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 188 KVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred cCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence 888764 47788899999999998876544 67788999999999988754 457788999999999998887654
Q ss_pred hhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccccc
Q 038407 253 SILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYK 332 (528)
Q Consensus 253 ~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (528)
+.....+++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +.
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~------------------------------ 306 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS------------------------------ 306 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG------------------------------
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc------------------------------
Confidence 2222334777777777765443 6677777777777777654221 11
Q ss_pred ccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeC
Q 038407 333 EKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDL 412 (528)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 412 (528)
.+++|++|++++|.+++..| +..+++|+.|++++|++++. ..+..+++|+.|++
T Consensus 307 ----------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 307 ----------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 360 (466)
T ss_dssp ----------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred ----------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence 14467777777777765443 56777777777777777754 35677777777777
Q ss_pred cCCcCcccCccccccCCCCCEEEccCCCCcc
Q 038407 413 SYNKLDGKIPLQLVELNTLAVFNVAHNNLSG 443 (528)
Q Consensus 413 s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 443 (528)
++|++++..| +..+++|+.|++++|++++
T Consensus 361 ~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 361 GHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 7777776555 6677777777777777765
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-38 Score=330.18 Aligned_cols=378 Identities=19% Similarity=0.175 Sum_probs=259.4
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCcc-ccC
Q 038407 3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQG-HIP 81 (528)
Q Consensus 3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~ 81 (528)
+++..|.+|.++++|++|+|++|++++..|.. |.++++|++|++++|.++. +|.. .+++|++|++++|++++ .+|
T Consensus 64 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p 139 (562)
T 3a79_B 64 ISELRMPDISFLSELRVLRLSHNRIRSLDFHV-FLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVC 139 (562)
T ss_dssp CCCCCGGGTTTCTTCCEEECCSCCCCEECTTT-TTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCC
T ss_pred ccccChhhhccCCCccEEECCCCCCCcCCHHH-hCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCch
Confidence 45566689999999999999999998544544 6899999999999999985 4444 89999999999999984 234
Q ss_pred hhhhhcCCCCceeeccCCcCcccCCccccCCCCC--CEEEccCCcc--cccCChhhhh----------------------
Q 038407 82 VKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL--ISLDLSNNQL--TGEIPEHLAM---------------------- 135 (528)
Q Consensus 82 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~---------------------- 135 (528)
..+.. +++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..
T Consensus 140 ~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~ 215 (562)
T 3a79_B 140 KEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215 (562)
T ss_dssp GGGGG-CTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE
T ss_pred Hhhcc-cCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhh
Confidence 55655 89999999999999753 45556666 9999999998 6455543321
Q ss_pred ---CCCCCCEEEccCCcCcc----cCCccCCCCCCCCEEEccCCcCCc-----cCcccCCCCCCCEEEccCCccCccCCc
Q 038407 136 ---GCVDLEYLLLSNNSLEG----HLFPRNFNLTNLRRLQLDGNHFRE-----ILESLSKCSSLEGLYLSDNNLSGKIPR 203 (528)
Q Consensus 136 ---~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~ 203 (528)
.+++|+.+++++|+... ...+.+..+++|+.+++.++.+.. +++.+ ..++|++|++++|.+.+.+|.
T Consensus 216 ~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~ 294 (562)
T 3a79_B 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDR 294 (562)
T ss_dssp EESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCC
T ss_pred cccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccc
Confidence 22334444444442100 000112222233333322222211 11111 123555666666655544444
Q ss_pred cc-----cCC--------------------------CCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccch
Q 038407 204 WL-----GNL--------------------------SMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHA 252 (528)
Q Consensus 204 ~l-----~~l--------------------------~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 252 (528)
.+ ..+ .+|++|++++|.+.... ....+++|++|++++|++++..+..
T Consensus 295 ~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhh
Confidence 33 112 34667777777664221 1256788888888888888765554
Q ss_pred hhhccccceeeeccCccccc--CcccccCCCCCCEEEccCCcCCcCCCCC-CcCCccccccccCCCCCCCCccccccccc
Q 038407 253 SILSLSKDQLVLAHNNFEGE--VPIQLCQLNKLQLIDLSNNILSGHIPPC-LDNTTLHESYIDTSSPESSETSFVDEGFA 329 (528)
Q Consensus 253 ~~~~~~~~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (528)
+.....+++|++++|++++. .|..+..+++|+.|++++|.+++.+|.. +..
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-------------------------- 426 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW-------------------------- 426 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC--------------------------
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC--------------------------
Confidence 44444558888888888763 3466788888888888888887645543 221
Q ss_pred cccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCe
Q 038407 330 FYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKS 409 (528)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 409 (528)
+++|++|++++|.+++..|..+. ++|+.|+|++|+++ .+|..+.++++|++
T Consensus 427 --------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 427 --------------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE 477 (562)
T ss_dssp --------------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred --------------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCE
Confidence 45899999999999876555443 69999999999999 56666679999999
Q ss_pred eeCcCCcCcccCccccccCCCCCEEEccCCCCccCCC
Q 038407 410 LDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIP 446 (528)
Q Consensus 410 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p 446 (528)
|+|++|+++.+.+..+..+++|+.|++++|++.+..+
T Consensus 478 L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp EECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred EECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 9999999995444449999999999999999987554
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.8e-37 Score=328.35 Aligned_cols=407 Identities=20% Similarity=0.163 Sum_probs=264.5
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407 3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV 82 (528)
Q Consensus 3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 82 (528)
+++..+.+|.++++|++|+|++|+++ .+++..|.++++|++|+|++|++++..+..|.++++|++|++++|+++ .++.
T Consensus 64 i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~ 141 (635)
T 4g8a_A 64 LRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLEN 141 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTT
T ss_pred CCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCCh
Confidence 34445678999999999999999998 677666899999999999999999888888999999999999999998 6766
Q ss_pred hhhhcCCCCceeeccCCcCccc-CCccccCCCCCCEEEccCCcccccCChhhhhCCCC----CCEEEccCCcCcccCCcc
Q 038407 83 KIGDFLPSLKYFNISMNAFDSS-IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD----LEYLLLSNNSLEGHLFPR 157 (528)
Q Consensus 83 ~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~----L~~L~l~~n~l~~~~~~~ 157 (528)
..+..+++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+ ..+.+ ...++++.|.++...+..
T Consensus 142 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcccCcccccCccc
Confidence 6555589999999999999764 57888999999999999999984333322 22221 224444444333211100
Q ss_pred --------------------------------------------------------------------------------
Q 038407 158 -------------------------------------------------------------------------------- 157 (528)
Q Consensus 158 -------------------------------------------------------------------------------- 157 (528)
T Consensus 221 ~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 300 (635)
T 4g8a_A 221 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID 300 (635)
T ss_dssp TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT
T ss_pred ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhh
Confidence
Q ss_pred -CCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccC-------------------CccccCCCCCCeeecC
Q 038407 158 -NFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKI-------------------PRWLGNLSMLQHIILP 217 (528)
Q Consensus 158 -~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------------~~~l~~l~~L~~L~L~ 217 (528)
+....+++.+.+.++.+..+. .+.....++.|++.+|.+.... +.....+++|+.++++
T Consensus 301 ~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls 379 (635)
T 4g8a_A 301 LFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 379 (635)
T ss_dssp TTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECC
T ss_pred hhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhh
Confidence 001112222222222222211 1222334444444444332111 1122345667777777
Q ss_pred Cceeec--cCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccC-cccccCCCCCCEEEccCCcCC
Q 038407 218 ENHFEG--PIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV-PIQLCQLNKLQLIDLSNNILS 294 (528)
Q Consensus 218 ~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~ 294 (528)
+|.+.. ..+..+..+.+|+.+++..+.+...... +......+.+++..+...... ...+..+++++.++++.|.+.
T Consensus 380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~ 458 (635)
T 4g8a_A 380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 458 (635)
T ss_dssp SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCE
T ss_pred ccccccccccccchhhhhhhhhhhcccccccccccc-ccccccccchhhhhccccccccccccccccccccccccccccc
Confidence 776642 2334445556666666666655443221 222233355555555444332 234455555555555555555
Q ss_pred cCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccc---cccccccccCcccEEECCCCcCcc
Q 038407 295 GHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNI---AYTYRGRVISYLSELDLSYNKLIG 371 (528)
Q Consensus 295 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~ 371 (528)
+..+..+........ +.+..+.. ........+++|++|+|++|++++
T Consensus 459 ~~~~~~~~~~~~L~~------------------------------L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 459 VAFNGIFNGLSSLEV------------------------------LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp ECCTTTTTTCTTCCE------------------------------EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred cccccccccchhhhh------------------------------hhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 444433332221000 00000000 000011225689999999999999
Q ss_pred CCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccC-CCCCEEEccCCCCccC
Q 038407 372 QIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVEL-NTLAVFNVAHNNLSGK 444 (528)
Q Consensus 372 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~~ 444 (528)
..|..|.++++|++|+|++|++++..|..|+++++|++|||++|++++..|..+..+ ++|++|++++|++...
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999998 6899999999999864
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.4e-37 Score=312.92 Aligned_cols=356 Identities=25% Similarity=0.348 Sum_probs=298.3
Q ss_pred CcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCccc
Q 038407 25 LNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSS 104 (528)
Q Consensus 25 ~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 104 (528)
..+.+.++. ..++++++|+++++.+... + .+..+++|++|++++|.++ .++. +.. +++|++|++++|.+.+.
T Consensus 34 ~~~~~~i~~---~~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~-~~~-l~~L~~L~l~~n~l~~~ 105 (466)
T 1o6v_A 34 TNVTDTVSQ---TDLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP-LKN-LTKLVDILMNNNQIADI 105 (466)
T ss_dssp SSTTSEECH---HHHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCCC
T ss_pred cccccccCh---hHhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh-hhc-cccCCEEECCCCccccC
Confidence 334444443 3567899999999998753 3 4788999999999999998 5554 444 89999999999999866
Q ss_pred CCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCC
Q 038407 105 IPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKC 184 (528)
Q Consensus 105 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l 184 (528)
.+ +.++++|++|++++|.++ .++. +..+++|++|++++|.+++ .+.+..+++|++|+++ +.+...+ .+..+
T Consensus 106 ~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~-~~~~~~~-~~~~l 176 (466)
T 1o6v_A 106 TP--LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLK-PLANL 176 (466)
T ss_dssp GG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECC--CGGGTTCTTCSEEEEE-ESCCCCG-GGTTC
T ss_pred hh--hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCC--ChhhccCCcccEeecC-CcccCch-hhccC
Confidence 54 999999999999999998 6665 4689999999999999986 3468899999999996 5555554 48899
Q ss_pred CCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeee
Q 038407 185 SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVL 264 (528)
Q Consensus 185 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L 264 (528)
++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|++.++. .......+++|++
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l 250 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDL 250 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEEC
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hhhcCCCCCEEEC
Confidence 9999999999998753 458899999999999999987655 778999999999999998763 2333344599999
Q ss_pred ccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeee
Q 038407 265 AHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTT 344 (528)
Q Consensus 265 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (528)
++|.+.+..+ +..+++|+.|++++|.+++..+ +..
T Consensus 251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~----------------------------------------- 285 (466)
T 1o6v_A 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG----------------------------------------- 285 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT-----------------------------------------
T ss_pred CCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC-----------------------------------------
Confidence 9999987655 8899999999999999875322 211
Q ss_pred ccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccc
Q 038407 345 KNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQ 424 (528)
Q Consensus 345 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 424 (528)
+++|++|++++|++.+..+ +..+++|+.|++++|++++..| +..+++|++|++++|++++. ..
T Consensus 286 -----------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 286 -----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp -----------CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred -----------CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence 4589999999999986533 8899999999999999997765 78999999999999999965 47
Q ss_pred cccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCC
Q 038407 425 LVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLC 467 (528)
Q Consensus 425 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c 467 (528)
+..+++|+.|++++|++++..| +..+++|+.+++++|+|..
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 8999999999999999998887 6789999999999999886
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.8e-37 Score=312.46 Aligned_cols=358 Identities=17% Similarity=0.125 Sum_probs=291.4
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccCh
Q 038407 3 VVAHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPV 82 (528)
Q Consensus 3 ~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 82 (528)
..+..+..++++++|++|++++|.+++ +|. +..+++|++|++++|.+++. .+..+++|++|++++|.++ .++
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~-~~~- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLT-NLD- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC-
T ss_pred cCcccccChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCc-eee-
Confidence 445566788999999999999999984 563 68999999999999999875 3889999999999999998 454
Q ss_pred hhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCC
Q 038407 83 KIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLT 162 (528)
Q Consensus 83 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 162 (528)
+.. +++|++|++++|++++. + +..+++|++|++++|+++ .++ +..+++|++|++++|...+.. .+..++
T Consensus 102 -~~~-l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 102 -VTP-LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp -CTT-CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred -cCC-CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccccc--ccccCC
Confidence 444 88999999999999864 3 889999999999999998 455 357899999999999655433 577899
Q ss_pred CCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEccc
Q 038407 163 NLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISD 242 (528)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~ 242 (528)
+|++|++++|.++.++ +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++
T Consensus 171 ~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 171 QLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp TCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred cCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 9999999999999976 78899999999999999864 48889999999999999997 45 78999999999999
Q ss_pred Ccccccccchhhhcc-------ccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCC
Q 038407 243 NNISGIYHHASILSL-------SKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSS 315 (528)
Q Consensus 243 n~l~~~~~~~~~~~~-------~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~ 315 (528)
|+++++......... ..+.+++++|.+.+.+| +..+++|+.|++++|...+.+|.........
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L-------- 312 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL-------- 312 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC--------
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe--------
Confidence 999987643221111 23677888888777766 5678999999999998877666432222100
Q ss_pred CCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccc
Q 038407 316 PESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTG 395 (528)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 395 (528)
. ....++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 313 -------------------------~-----------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 313 -------------------------D-----------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp -------------------------C-----------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred -------------------------c-----------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 0 01145799999999999974 3 8889999999999999985
Q ss_pred cCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCC
Q 038407 396 SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT 449 (528)
Q Consensus 396 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~ 449 (528)
++.|+.|++++|++.+. ..+..|..+++++|+++|.+|..+
T Consensus 354 --------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 354 --------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp --------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred --------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 35677888999999865 245568889999999999999754
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.2e-38 Score=318.93 Aligned_cols=319 Identities=20% Similarity=0.181 Sum_probs=162.5
Q ss_pred CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeecc
Q 038407 18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNIS 97 (528)
Q Consensus 18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~ 97 (528)
+.++.++++++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|++++|.+++..|..+.. +++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECC
Confidence 34555555444 444432 245555555555555555555555555555555555555322333332 5555555555
Q ss_pred CCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCcc
Q 038407 98 MNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI 177 (528)
Q Consensus 98 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 177 (528)
+|.++...+..|.++++|++|++++|.+. .++...+..+++|++|++++|.++...+..+.++++|++|++++|.+..+
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 55555444444555555555555555555 23222334555555555555555554444555555555555555555555
Q ss_pred Cc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhc
Q 038407 178 LE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILS 256 (528)
Q Consensus 178 ~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 256 (528)
++ .+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.++.......+|+.|++++|+++++
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-------- 239 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV-------- 239 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC--------
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc--------
Confidence 44 345555555555555555544444555555555555555544444443333334555555555444322
Q ss_pred cccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccccccccc
Q 038407 257 LSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKI 336 (528)
Q Consensus 257 ~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (528)
.+..+..+++|+.|++++|.+++..+..+..
T Consensus 240 ----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------------- 270 (477)
T 2id5_A 240 ----------------PYLAVRHLVYLRFLNLSYNPISTIEGSMLHE--------------------------------- 270 (477)
T ss_dssp ----------------CHHHHTTCTTCCEEECCSSCCCEECTTSCTT---------------------------------
T ss_pred ----------------CHHHhcCccccCeeECCCCcCCccChhhccc---------------------------------
Confidence 1123445555555555555554333322222
Q ss_pred ccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCc
Q 038407 337 QETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK 416 (528)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 416 (528)
+++|++|++++|++.+..|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|.
T Consensus 271 -------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 271 -------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred -------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 2245555555555555555555555555555555555555444455555555555555555
Q ss_pred Cc
Q 038407 417 LD 418 (528)
Q Consensus 417 l~ 418 (528)
+.
T Consensus 332 l~ 333 (477)
T 2id5_A 332 LA 333 (477)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-37 Score=312.41 Aligned_cols=205 Identities=25% Similarity=0.243 Sum_probs=81.2
Q ss_pred CCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCC-------------CEEEccCCcCccccC
Q 038407 15 HDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSL-------------MLLDVSNNNLQGHIP 81 (528)
Q Consensus 15 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L-------------~~L~ls~n~l~~~~~ 81 (528)
++|++|++++|++ +.+|..+ +++++|++|++++|.+.+..|..++.+++| ++|++++|.++ .+|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred ccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence 4555555555555 3555442 455555555555555555555555444432 55555555544 333
Q ss_pred hhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCC
Q 038407 82 VKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNL 161 (528)
Q Consensus 82 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 161 (528)
. ..++|++|++++|.+++ +|.. +++|++|++++|+++ .++.. .++|++|++++|.+++ ++ .+.++
T Consensus 88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 2 12345555555555543 2322 244555555555444 23221 1345555555554443 22 34444
Q ss_pred CCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcc
Q 038407 162 TNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNIS 241 (528)
Q Consensus 162 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~ 241 (528)
++|++|++++|.+.+++..+ ++|++|++++|.+.+ +| .+..+++|++|++++|.+++ +|.. .++|++|+++
T Consensus 153 ~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG 223 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred CCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence 55555555555444433221 244555555554443 23 34444445555555444442 2211 1344444444
Q ss_pred cCccc
Q 038407 242 DNNIS 246 (528)
Q Consensus 242 ~n~l~ 246 (528)
+|.+.
T Consensus 224 ~n~l~ 228 (454)
T 1jl5_A 224 NNILE 228 (454)
T ss_dssp SSCCS
T ss_pred CCcCC
Confidence 44444
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.6e-37 Score=309.90 Aligned_cols=255 Identities=24% Similarity=0.238 Sum_probs=202.9
Q ss_pred ccCchhhhCCCCCCEEEccCCcCcccCChhhhhcCCC-------------CCEEEccCCCCccccCcCccCCCCCCEEEc
Q 038407 5 AHSPNFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTK-------------LESNFLLNNSLPGLFLLPIHCHKSLMLLDV 71 (528)
Q Consensus 5 ~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~-------------L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 71 (528)
|.+|++++++++|++|++++|.+.+.+|..+ +++++ +++|++++|.+++. |. ..++|++|++
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~---~~~~L~~L~l 98 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE---LPPHLESLVA 98 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS---CCTTCSEEEC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccC-CC---CcCCCCEEEc
Confidence 8899999999999999999999998999874 56665 59999999999864 32 2378999999
Q ss_pred cCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCc
Q 038407 72 SNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLE 151 (528)
Q Consensus 72 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 151 (528)
++|.++ .+|.. .++|++|++++|++++. +.. .++|++|++++|+++ .+|. +.++++|++|++++|+++
T Consensus 99 ~~n~l~-~lp~~----~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 99 SCNSLT-ELPEL----PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp CSSCCS-SCCCC----CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCS
T ss_pred cCCcCC-ccccc----cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCc
Confidence 999999 47743 47999999999999853 322 268999999999999 6883 568999999999999998
Q ss_pred ccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccC
Q 038407 152 GHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQ 231 (528)
Q Consensus 152 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~ 231 (528)
+ ++.. ..+|++|++++|.+..++ .+..+++|++|++++|.+.+ +|.. .++|++|++++|.++ .+| .+..
T Consensus 167 ~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~ 235 (454)
T 1jl5_A 167 K-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQN 235 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTT
T ss_pred c-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCC
Confidence 6 4433 359999999999999976 68999999999999999985 4443 358999999999998 566 4899
Q ss_pred CCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCc
Q 038407 232 LDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSG 295 (528)
Q Consensus 232 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 295 (528)
+++|++|++++|++++++.. ....++|++++|++++ +|.. .++|+.|++++|.+++
T Consensus 236 l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred CCCCCEEECCCCcCCccccc----ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 99999999999999886432 2455999999999986 4433 4889999999999885
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.6e-37 Score=302.63 Aligned_cols=312 Identities=21% Similarity=0.246 Sum_probs=234.8
Q ss_pred CCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC
Q 038407 62 CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE 141 (528)
Q Consensus 62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 141 (528)
.++++++|+++++.++ .+|..++..+++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 3577888888888877 677776666788888888888888777778888888888888888887 55555556788888
Q ss_pred EEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCce
Q 038407 142 YLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH 220 (528)
Q Consensus 142 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 220 (528)
+|++++|.++......+..+++|++|++++|.+..+++ .+..+++|++|++++|.+++. .+..+++|++|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 88888888885444446778888888888888887765 577888888888888888753 35567888888888888
Q ss_pred eeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCC
Q 038407 221 FEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPC 300 (528)
Q Consensus 221 i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~ 300 (528)
+++. ...++|+.|++++|.+..+... ..++|+.|++++|.+++. +.
T Consensus 198 l~~~-----~~~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 198 LSTL-----AIPIAVEELDASHNSINVVRGP---------------------------VNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp CSEE-----ECCSSCSEEECCSSCCCEEECC---------------------------CCSSCCEEECCSSCCCCC--GG
T ss_pred cccc-----CCCCcceEEECCCCeeeecccc---------------------------ccccccEEECCCCCCccc--HH
Confidence 7632 3446788888888877654211 135788888888877632 11
Q ss_pred CcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhcc
Q 038407 301 LDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNL 380 (528)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 380 (528)
+. .+++|++|++++|.+.+..|..|..+
T Consensus 244 l~----------------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 244 LL----------------------------------------------------NYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp GG----------------------------------------------------GCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred Hc----------------------------------------------------CCCCccEEECCCCcCCCcChhHcccc
Confidence 11 14578888888888887778888888
Q ss_pred ccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcc
Q 038407 381 TRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSY 460 (528)
Q Consensus 381 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l 460 (528)
++|+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++.. | +..+++|+.+++
T Consensus 272 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 346 (390)
T ss_dssp SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence 888888888888884 4556677888888888888887 4566777888888888888888754 3 446788888888
Q ss_pred cCCCCCCCC
Q 038407 461 EGNPFLCGL 469 (528)
Q Consensus 461 ~~Np~~c~~ 469 (528)
++|||.|+|
T Consensus 347 ~~N~~~~~~ 355 (390)
T 3o6n_A 347 SHNDWDCNS 355 (390)
T ss_dssp CSSCEEHHH
T ss_pred CCCCccchh
Confidence 888888875
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.4e-36 Score=297.84 Aligned_cols=337 Identities=21% Similarity=0.223 Sum_probs=283.8
Q ss_pred cCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCE
Q 038407 38 NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLIS 117 (528)
Q Consensus 38 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 117 (528)
.++++++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..|..|.++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 5789999999999998776666889999999999999998 555544445899999999999999888899999999999
Q ss_pred EEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCcc
Q 038407 118 LDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNL 197 (528)
Q Consensus 118 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l 197 (528)
|++++|.++ .+|..++.++++|++|++++|.+++..+..+..+++|++|++++|.+..++ +..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccc
Confidence 999999999 889888778999999999999999877778999999999999999998874 56789999999999988
Q ss_pred CccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccc
Q 038407 198 SGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQL 277 (528)
Q Consensus 198 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l 277 (528)
.+ +...+.|++|++++|.++.. +.. ..++|+.|++++|.+++. ..+
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--------------------------~~l 244 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--------------------------AWL 244 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--------------------------GGG
T ss_pred cc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--------------------------HHH
Confidence 73 34557899999999999855 332 357899999999988643 246
Q ss_pred cCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccC
Q 038407 278 CQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVIS 357 (528)
Q Consensus 278 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (528)
..+++|+.|++++|.+.+..|..+.. ++
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------------------------------------------l~ 272 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVK----------------------------------------------------MQ 272 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTT----------------------------------------------------CS
T ss_pred cCCCCccEEECCCCcCCCcChhHccc----------------------------------------------------cc
Confidence 77899999999999998765655443 45
Q ss_pred cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA 437 (528)
Q Consensus 358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls 437 (528)
+|++|++++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|+++.. + +..+++|++|+++
T Consensus 273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS 347 (390)
T ss_dssp SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcC
Confidence 89999999999985 5666788999999999999999 5677788999999999999999854 3 6788999999999
Q ss_pred CCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407 438 HNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 438 ~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l 471 (528)
+|++.+.... .-+..+....+.+++..|.++.
T Consensus 348 ~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 348 HNDWDCNSLR--ALFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp SSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTTC
T ss_pred CCCccchhHH--HHHHHHHhhcccccCceecccc
Confidence 9999864222 1345666677888888887643
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1e-34 Score=283.45 Aligned_cols=306 Identities=19% Similarity=0.288 Sum_probs=210.0
Q ss_pred hcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCC
Q 038407 37 ENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLI 116 (528)
Q Consensus 37 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 116 (528)
..+++|++|++++|.+... ..+..+++|++|++++|.++ .++. + ..+++|++|++++|.++.. ..+.++++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~-~~~~-~-~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQIT-DISP-L-SNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred hhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccc-cchh-h-hcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 4566667777766666543 23566667777777777666 4443 3 3366777777777766642 3566777777
Q ss_pred EEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCc
Q 038407 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNN 196 (528)
Q Consensus 117 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~ 196 (528)
+|++++|.+. .++. +..+++|++|++++|..... .+.+..+++|++|++++|.+..+++ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC
T ss_pred EEECcCCccc-Cchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc
Confidence 7777777776 4544 34677777777777754432 3346677777777777777776654 6677778888888887
Q ss_pred cCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCccc
Q 038407 197 LSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQ 276 (528)
Q Consensus 197 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~ 276 (528)
+.+. +. +..+++|+.+++++|.+++..+ +..+++|++|++++|++++.. .
T Consensus 189 l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-------------------------~- 238 (347)
T 4fmz_A 189 IEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-------------------------P- 238 (347)
T ss_dssp CCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-------------------------G-
T ss_pred cccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-------------------------c-
Confidence 7643 22 6777888888888888775433 677788888888888776431 1
Q ss_pred ccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeecccccccccccc
Q 038407 277 LCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVI 356 (528)
Q Consensus 277 l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (528)
+..+++|++|++++|.+++. + .+. .+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~-~-~~~----------------------------------------------------~l 264 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI-N-AVK----------------------------------------------------DL 264 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-GGT----------------------------------------------------TC
T ss_pred hhcCCCCCEEECCCCccCCC-h-hHh----------------------------------------------------cC
Confidence 55677788888888776531 1 111 14
Q ss_pred CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407 357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV 436 (528)
Q Consensus 357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 436 (528)
++|++|++++|.+++. ..+..+++|+.|++++|++++..+..++++++|++|++++|++++..| +..+++|++|++
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 5788888888887753 457888888888888888888888888888888888888888886655 778888888888
Q ss_pred cCCCCc
Q 038407 437 AHNNLS 442 (528)
Q Consensus 437 s~N~l~ 442 (528)
++|+++
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 888875
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-35 Score=310.02 Aligned_cols=311 Identities=21% Similarity=0.252 Sum_probs=199.8
Q ss_pred CCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCE
Q 038407 63 HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEY 142 (528)
Q Consensus 63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 142 (528)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 467788888888777 677666666778888888888888777778888888888888888887 555555567888888
Q ss_pred EEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCcee
Q 038407 143 LLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF 221 (528)
Q Consensus 143 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 221 (528)
|++++|.++...+..|..+++|++|++++|.+..+++ .+..+++|++|++++|.+.+. .+..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 8888888876544456778888888888888877766 677788888888888887754 245577788888888877
Q ss_pred eccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCC
Q 038407 222 EGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCL 301 (528)
Q Consensus 222 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~ 301 (528)
++ +...++|+.|++++|.+..+.... .++|+.|++++|.+++. ..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~~---------------------------~~~L~~L~L~~n~l~~~--~~l 250 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGPV---------------------------NVELTILKLQHNNLTDT--AWL 250 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECSC---------------------------CSCCCEEECCSSCCCCC--GGG
T ss_pred cc-----ccCCchhheeeccCCccccccccc---------------------------CCCCCEEECCCCCCCCC--hhh
Confidence 63 234567888888888776543221 13455555555555421 111
Q ss_pred cCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccc
Q 038407 302 DNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLT 381 (528)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 381 (528)
. .+++|+.|++++|.+.+..|..|..++
T Consensus 251 ~----------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 251 L----------------------------------------------------NYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp G----------------------------------------------------GCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred c----------------------------------------------------cCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 1 133455555555555555555555555
Q ss_pred cCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCccc
Q 038407 382 RIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYE 461 (528)
Q Consensus 382 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~ 461 (528)
+|+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|++++.. +..+++|+.++++
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~ 353 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS 353 (597)
T ss_dssp SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence 55555555555553 3344445555555555555555 34444555555555555555555332 2244555555555
Q ss_pred CCCCCCCC
Q 038407 462 GNPFLCGL 469 (528)
Q Consensus 462 ~Np~~c~~ 469 (528)
+|||.|+|
T Consensus 354 ~N~~~~~~ 361 (597)
T 3oja_B 354 HNDWDCNS 361 (597)
T ss_dssp SSCEEHHH
T ss_pred CCCCCChh
Confidence 55555543
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.6e-35 Score=306.12 Aligned_cols=336 Identities=21% Similarity=0.220 Sum_probs=284.6
Q ss_pred cCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCE
Q 038407 38 NNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLIS 117 (528)
Q Consensus 38 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 117 (528)
.+.+++.+++++|.+....+..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+++..|..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 46899999999999988777778899999999999999994 44434444899999999999999988899999999999
Q ss_pred EEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCcc
Q 038407 118 LDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNL 197 (528)
Q Consensus 118 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l 197 (528)
|++++|.++ .+|..++.++++|++|++++|.+++..+..+..+++|++|++++|.+..++ +..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcc
Confidence 999999999 888888778999999999999999888888999999999999999999874 56689999999999988
Q ss_pred CccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccc
Q 038407 198 SGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQL 277 (528)
Q Consensus 198 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l 277 (528)
.+ +...+.|+.|++++|.++...+.. .++|+.|++++|.+++. ..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--------------------------~~l 250 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--------------------------AWL 250 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--------------------------GGG
T ss_pred cc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--------------------------hhh
Confidence 74 345678999999999998543322 36899999999988643 346
Q ss_pred cCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccC
Q 038407 278 CQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVIS 357 (528)
Q Consensus 278 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (528)
..+++|+.|++++|.+.+..|..+.. ++
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------------------------------------------l~ 278 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVK----------------------------------------------------MQ 278 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTT----------------------------------------------------CS
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcC----------------------------------------------------cc
Confidence 78899999999999998776665544 45
Q ss_pred cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA 437 (528)
Q Consensus 358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls 437 (528)
+|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++. + +..+++|+.|+++
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~ 353 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS 353 (597)
T ss_dssp SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEee
Confidence 89999999999985 5667788999999999999999 6777889999999999999999865 3 6778999999999
Q ss_pred CCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407 438 HNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470 (528)
Q Consensus 438 ~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~ 470 (528)
+|++.+.... ..+..+....+.+++..|+.+
T Consensus 354 ~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 354 HNDWDCNSLR--ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence 9999864322 134556666788899899764
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.1e-34 Score=280.03 Aligned_cols=306 Identities=24% Similarity=0.365 Sum_probs=233.1
Q ss_pred ccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCC
Q 038407 60 IHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD 139 (528)
Q Consensus 60 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 139 (528)
+..+++|++|+++++.+. .++. +.. +++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +.++++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~-~~~-~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG-IEY-LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred chhcccccEEEEeCCccc-cchh-hhh-cCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCc
Confidence 446677888888888777 5543 333 7788888888888775433 777888888888888777 5542 346778
Q ss_pred CCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCc
Q 038407 140 LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPEN 219 (528)
Q Consensus 140 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 219 (528)
|++|++++|.+++. +.+..+++|++|++++|......+.+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 112 L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 112 LRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp CSEEECTTSCCCCC--GGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CCEEECcCCcccCc--hhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 88888888877752 22667777888888777555555557777777777777777764322 667777777777777
Q ss_pred eeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCC
Q 038407 220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPP 299 (528)
Q Consensus 220 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~ 299 (528)
.+.+..+ +..+++|+.+++++|.+.+. .+ +..+++|+.|++++|.+++..+
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDI------------------------TP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCC------------------------GG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred ccccccc--ccCCCccceeecccCCCCCC------------------------ch--hhcCCcCCEEEccCCccCCCcc-
Confidence 7764332 66677777777777766543 12 6678999999999999874322
Q ss_pred CCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhc
Q 038407 300 CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGN 379 (528)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 379 (528)
+. .+++|++|++++|.+++. ..+..
T Consensus 239 -~~----------------------------------------------------~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 239 -LA----------------------------------------------------NLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp -GT----------------------------------------------------TCTTCCEEECCSSCCCCC--GGGTT
T ss_pred -hh----------------------------------------------------cCCCCCEEECCCCccCCC--hhHhc
Confidence 21 156899999999999854 57899
Q ss_pred cccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCc
Q 038407 380 LTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESS 459 (528)
Q Consensus 380 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~ 459 (528)
+++|+.|++++|++++. ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..| +..+++|+.++
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence 99999999999999965 468999999999999999999999999999999999999999998777 67899999999
Q ss_pred ccCCCC
Q 038407 460 YEGNPF 465 (528)
Q Consensus 460 l~~Np~ 465 (528)
+++|+.
T Consensus 340 l~~N~i 345 (347)
T 4fmz_A 340 FANQVI 345 (347)
T ss_dssp SSCC--
T ss_pred hhhhcc
Confidence 999985
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2e-34 Score=290.14 Aligned_cols=341 Identities=18% Similarity=0.172 Sum_probs=243.1
Q ss_pred hhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCC
Q 038407 36 LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL 115 (528)
Q Consensus 36 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 115 (528)
+.++++|++|++++|.+++. | .+..+++|++|++++|.++ .++ +.. +++|++|++++|.+++. + ++++++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~--~~~-l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD--LSQ-NTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC--CTT-CTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc--ccc-CCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 57899999999999999875 4 6889999999999999998 455 444 88999999999999865 3 8899999
Q ss_pred CEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCc-CCccCcccCCCCCCCEEEccC
Q 038407 116 ISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNH-FREILESLSKCSSLEGLYLSD 194 (528)
Q Consensus 116 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~L~~L~L~~ 194 (528)
++|++++|+++ .++ +..+++|++|++++|++++. .+..+++|++|++++|. +..+ .+..+++|++|++++
T Consensus 109 ~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 109 TYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CEEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 99999999998 565 45789999999999999873 37789999999999995 4443 577889999999999
Q ss_pred CccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCc
Q 038407 195 NNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVP 274 (528)
Q Consensus 195 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~ 274 (528)
|.+++ +| +..+++|++|++++|.+++. .+..+++|+.|++++|++++++ ......+++|++++|++++..
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC-
Confidence 99986 44 78899999999999999865 3788999999999999998863 223334488888888887754
Q ss_pred ccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeecccccccccc
Q 038407 275 IQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR 354 (528)
Q Consensus 275 ~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (528)
+..+++|+.|++++|.+...--. ..... . .....
T Consensus 250 --~~~l~~L~~L~l~~n~L~~L~l~---~n~~~------------------------------~-----------~~~~~ 283 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQTDLLEIDLT---HNTQL------------------------------I-----------YFQAE 283 (457)
T ss_dssp --CTTCTTCCEEECTTCCCSCCCCT---TCTTC------------------------------C-----------EEECT
T ss_pred --HHHCCCCCEEeccCCCCCEEECC---CCccC------------------------------C-----------ccccc
Confidence 34566677776666654311000 00000 0 00001
Q ss_pred ccCcccEEECCCCcCccCCCh--------hhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccc
Q 038407 355 VISYLSELDLSYNKLIGQIPP--------QIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLV 426 (528)
Q Consensus 355 ~~~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 426 (528)
.+++|+.|++++|...+.+|. .+.++++|+.|++++|++++. + ++++++|+.|++++|++++
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~------- 353 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD------- 353 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-------
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-------
Confidence 145677777777765444332 134455666666666666653 2 6666666666666666663
Q ss_pred cCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCC
Q 038407 427 ELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFL 466 (528)
Q Consensus 427 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~ 466 (528)
++.|..|++++|.+.+. .++..++.++++.|.+.
T Consensus 354 -l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 354 -FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLT 387 (457)
T ss_dssp -CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEE
T ss_pred -ccccccccccCCcEEec-----ceeeecCccccccCcEE
Confidence 23455556666666654 24455666777777654
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.8e-35 Score=281.35 Aligned_cols=258 Identities=31% Similarity=0.495 Sum_probs=216.4
Q ss_pred CCCCEEEccCCcCcc--cCCccCCCCCCCCEEEccC-CcCCc-cCcccCCCCCCCEEEccCCccCccCCccccCCCCCCe
Q 038407 138 VDLEYLLLSNNSLEG--HLFPRNFNLTNLRRLQLDG-NHFRE-ILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQH 213 (528)
Q Consensus 138 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 213 (528)
.++++|++++|.+++ .++..+..+++|++|++++ |.+.+ ++..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467888888888877 6777788888888888884 66663 4447777888888888888887777777888888888
Q ss_pred eecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCC-CCCEEEccCCc
Q 038407 214 IILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLN-KLQLIDLSNNI 292 (528)
Q Consensus 214 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~-~L~~L~ls~n~ 292 (528)
|++++|.+++..|..+..+++|++|++++|++++ .+|..+..++ +|+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~------------------------~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG------------------------AIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE------------------------ECCGGGGCCCTTCCEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccC------------------------cCCHHHhhhhhcCcEEECcCCe
Confidence 8888888887777777778888888877776653 4556677787 89999999999
Q ss_pred CCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccC
Q 038407 293 LSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQ 372 (528)
Q Consensus 293 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 372 (528)
+++.+|..+... .|++|++++|.+++.
T Consensus 186 l~~~~~~~~~~l-----------------------------------------------------~L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 186 LTGKIPPTFANL-----------------------------------------------------NLAFVDLSRNMLEGD 212 (313)
T ss_dssp EEEECCGGGGGC-----------------------------------------------------CCSEEECCSSEEEEC
T ss_pred eeccCChHHhCC-----------------------------------------------------cccEEECcCCcccCc
Confidence 987777655432 289999999999988
Q ss_pred CChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCccc
Q 038407 373 IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQF 452 (528)
Q Consensus 373 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~ 452 (528)
.|..|..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|.. .++
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 999999999999999999999976665 889999999999999999999999999999999999999999999987 689
Q ss_pred CCCCcCcccCCCCCCCCCCCCCC
Q 038407 453 ATFNESSYEGNPFLCGLPLPKSC 475 (528)
Q Consensus 453 ~~l~~l~l~~Np~~c~~~l~~~c 475 (528)
++|+.+++.+||+.|+.|++ .|
T Consensus 291 ~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccChHHhcCCCCccCCCCC-CC
Confidence 99999999999999998876 46
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=3.6e-37 Score=313.05 Aligned_cols=383 Identities=15% Similarity=0.093 Sum_probs=274.7
Q ss_pred CCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCcCccccChhhhhcCC
Q 038407 14 QHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLP 89 (528)
Q Consensus 14 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~ 89 (528)
.++|++|++++|++++.....++..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+...++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 357899999999998555555578999999999999998853 4567788899999999999998555556666566
Q ss_pred ----CCceeeccCCcCcc----cCCccccCCCCCCEEEccCCcccccCChhhh----hCCCCCCEEEccCCcCcccC---
Q 038407 90 ----SLKYFNISMNAFDS----SIPTSFGNMNFLISLDLSNNQLTGEIPEHLA----MGCVDLEYLLLSNNSLEGHL--- 154 (528)
Q Consensus 90 ----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~--- 154 (528)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ...++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 69999999999984 4578889999999999999998743333332 23567999999999888633
Q ss_pred -CccCCCCCCCCEEEccCCcCCccCc-ccC-----CCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeec
Q 038407 155 -FPRNFNLTNLRRLQLDGNHFREILE-SLS-----KCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEG 223 (528)
Q Consensus 155 -~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~ 223 (528)
+..+..+++|++|++++|.+..... .+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 3445567889999999988765422 121 356888888888888753 45666778888888888888765
Q ss_pred cC-----cccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407 224 PI-----PMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298 (528)
Q Consensus 224 ~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 298 (528)
.. +..+..+++|++|++++|.+++.... .++..+..+++|++|++++|.+.+..+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------------------DLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------------------HHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--------------------HHHHHHhhCCCcceEECCCCCCchHHH
Confidence 42 22233578888888888877643211 134456678888999998887753211
Q ss_pred CCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccC----CC
Q 038407 299 PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQ----IP 374 (528)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~ 374 (528)
..+...- ....++|++|++++|.+++. ++
T Consensus 302 ~~l~~~l-----------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 302 RLLCETL-----------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp HHHHHHH-----------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred HHHHHHh-----------------------------------------------ccCCccceeeEcCCCCCchHHHHHHH
Confidence 1110000 00124788999999988755 45
Q ss_pred hhhhccccCCEEeCCCccccccCCccccC-----CCCCCeeeCcCCcCcc----cCccccccCCCCCEEEccCCCCccC-
Q 038407 375 PQIGNLTRIQTLNLSYNNLTGSIPSTFSN-----LKHIKSLDLSYNKLDG----KIPLQLVELNTLAVFNVAHNNLSGK- 444 (528)
Q Consensus 375 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~ls~N~l~~~- 444 (528)
..+..+++|++|++++|.+++..+..+.. .++|++|+|++|++++ .+|..+..+++|++|++++|+++..
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence 66777889999999999888654444432 6789999999999885 6777888889999999999988753
Q ss_pred -------CCCCCcccCCCCcCcccCCCCC
Q 038407 445 -------IPEWTAQFATFNESSYEGNPFL 466 (528)
Q Consensus 445 -------~p~~~~~~~~l~~l~l~~Np~~ 466 (528)
+|. ...+++.+.+.++.+.
T Consensus 415 ~~~l~~~l~~---~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 415 ILQLVESVRQ---PGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHHHHTS---TTCCCCEEECTTCCCC
T ss_pred HHHHHHHhcc---CCcchhheeecccccC
Confidence 222 2235666666666544
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=9.6e-33 Score=267.52 Aligned_cols=288 Identities=23% Similarity=0.291 Sum_probs=148.3
Q ss_pred CCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEE
Q 038407 65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLL 144 (528)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 144 (528)
+++.++++++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence 5666666666665 555544 246666666666666555556666666666666666665 33222233555555555
Q ss_pred ccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeec-
Q 038407 145 LSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG- 223 (528)
Q Consensus 145 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~- 223 (528)
+++|.++. ++..+. ++|++|++++|.+..+++ ..+..+++|++|++++|.++.
T Consensus 109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPK-----------------------GVFSGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp CCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCS-----------------------GGGSSCSSCCEEECCSCCCBGG
T ss_pred CCCCcCCc-cCcccc--ccCCEEECCCCccCccCH-----------------------hHhCCCccCCEEECCCCccccC
Confidence 55555552 222222 444555555554444433 334444444444444444431
Q ss_pred -cCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCc
Q 038407 224 -PIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLD 302 (528)
Q Consensus 224 -~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 302 (528)
..+..+..+ +|+.|++++|++++++.... ..+++|++++|.+++..+..+..+++|+.|++++|.+++..+..+.
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred CCCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 333344444 45555555555444322110 1123333344444444444566666666666666666543333322
Q ss_pred CCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhcccc
Q 038407 303 NTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTR 382 (528)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 382 (528)
. +++|++|++++|+++ .+|..+..+++
T Consensus 239 ~----------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 239 F----------------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp G----------------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred C----------------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 2 235666666666665 45555666666
Q ss_pred CCEEeCCCccccccCCccccC------CCCCCeeeCcCCcCc--ccCccccccCCCCCEEEccCCC
Q 038407 383 IQTLNLSYNNLTGSIPSTFSN------LKHIKSLDLSYNKLD--GKIPLQLVELNTLAVFNVAHNN 440 (528)
Q Consensus 383 L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~ls~N~ 440 (528)
|+.|++++|++++..+..|.. .++|+.|++++|.+. ...|..|..+++|+.+++++|+
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 666666666666555555543 245566666666655 4455556666666666666553
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.1e-32 Score=265.10 Aligned_cols=245 Identities=23% Similarity=0.250 Sum_probs=121.0
Q ss_pred CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceee
Q 038407 16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95 (528)
Q Consensus 16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~ 95 (528)
++++++++++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.. +++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEE
Confidence 4555555555554 455432 245555555555555554555555555555555555555222333322 45555555
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcc--cCCccCCCCCCCCEEEccCCc
Q 038407 96 ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEG--HLFPRNFNLTNLRRLQLDGNH 173 (528)
Q Consensus 96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 173 (528)
+++|+++. +|..+. ++|++|++++|.++ .++...+.++++|++|++++|.++. ..+..+..+ +|++|++++|.
T Consensus 109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp CCSSCCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred CCCCcCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 55555542 232222 45555555555555 4444444455555555555555532 233333333 55555555555
Q ss_pred CCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchh
Q 038407 174 FREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHAS 253 (528)
Q Consensus 174 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 253 (528)
+..++..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 184 l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------- 254 (332)
T 2ft3_A 184 LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS------- 254 (332)
T ss_dssp CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-------
T ss_pred CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-------
Confidence 554444322 34555555555554444444444555555555555554444444444444544444444443
Q ss_pred hhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCC
Q 038407 254 ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHI 297 (528)
Q Consensus 254 ~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 297 (528)
.+|..+..+++|+.|++++|++++..
T Consensus 255 ------------------~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 255 ------------------RVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp ------------------BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred ------------------ecChhhhcCccCCEEECCCCCCCccC
Confidence 22334555666666666666665433
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.1e-32 Score=262.92 Aligned_cols=289 Identities=22% Similarity=0.259 Sum_probs=166.1
Q ss_pred CCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEE
Q 038407 64 KSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYL 143 (528)
Q Consensus 64 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 143 (528)
.+++.++++++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|.. +.++++|++|
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEE
Confidence 36777888877777 666544 357777777777777666666777777777777777776322333 3456666666
Q ss_pred EccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCc--cCCccccCCCCCCeeecCCce
Q 038407 144 LLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSG--KIPRWLGNLSMLQHIILPENH 220 (528)
Q Consensus 144 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~ 220 (528)
++++|.++. ++..+. ++|++|++++|.+..+++ .+..+++|++|++++|.+.. ..+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 666666653 232222 455555555555555443 34455555555555554432 333344444444444444444
Q ss_pred eeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCC
Q 038407 221 FEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPC 300 (528)
Q Consensus 221 i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~ 300 (528)
++. +|..+. ++|++|++++| .+++..+..+..+++|+.|++++|.+++..+..
T Consensus 183 l~~-l~~~~~--~~L~~L~l~~n------------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 183 ITT-IPQGLP--PSLTELHLDGN------------------------KITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp CCS-CCSSCC--TTCSEEECTTS------------------------CCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccc-CCcccc--ccCCEEECCCC------------------------cCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence 442 222211 33444444443 333344556667777777777777776544433
Q ss_pred CcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhcc
Q 038407 301 LDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNL 380 (528)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 380 (528)
+.. +++|++|++++|.++ .+|..+..+
T Consensus 236 ~~~----------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 236 LAN----------------------------------------------------TPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp GGG----------------------------------------------------STTCCEEECCSSCCS-SCCTTTTTC
T ss_pred ccC----------------------------------------------------CCCCCEEECCCCcCc-cCChhhccC
Confidence 322 336777777777776 566667777
Q ss_pred ccCCEEeCCCccccccCCccccC------CCCCCeeeCcCCcCcc--cCccccccCCCCCEEEccCCC
Q 038407 381 TRIQTLNLSYNNLTGSIPSTFSN------LKHIKSLDLSYNKLDG--KIPLQLVELNTLAVFNVAHNN 440 (528)
Q Consensus 381 ~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~ls~N~ 440 (528)
++|++|++++|++++..+..|.. .+.|+.|++++|.+.. +.|..|..+.+++.+++++|+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 77777777777777665555543 2566677777776653 445566666777777777664
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.2e-31 Score=259.61 Aligned_cols=247 Identities=21% Similarity=0.226 Sum_probs=141.5
Q ss_pred CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceee
Q 038407 16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95 (528)
Q Consensus 16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~ 95 (528)
++++++++++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.. +++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence 5666666666665 455432 256666666666666655556666666666666666666333444433 56666666
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcc--cCCccCCCCCCCCEEEccCCc
Q 038407 96 ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEG--HLFPRNFNLTNLRRLQLDGNH 173 (528)
Q Consensus 96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 173 (528)
+++|+++. +|..+. ++|++|++++|.++ .++...+.++++|++|++++|.+.. ..+..+.++++|++|++++|.
T Consensus 107 Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 66666653 333322 55666666666665 5555545556666666666666542 334445556666666666666
Q ss_pred CCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchh
Q 038407 174 FREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHAS 253 (528)
Q Consensus 174 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 253 (528)
+..++..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 183 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------- 253 (330)
T 1xku_A 183 ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV------- 253 (330)
T ss_dssp CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------
T ss_pred cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-------
Confidence 655554332 55566666666555555555555555666666555555544445555555555555555544
Q ss_pred hhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407 254 ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298 (528)
Q Consensus 254 ~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 298 (528)
.+|..+..+++|+.|++++|++++..+
T Consensus 254 ------------------~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 254 ------------------KVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp ------------------SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred ------------------cCChhhccCCCcCEEECCCCcCCccCh
Confidence 233445666677777777776664333
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.9e-31 Score=255.62 Aligned_cols=249 Identities=24% Similarity=0.320 Sum_probs=218.7
Q ss_pred CCCCEEEccCCcCcc--cCChhhhhcCCCCCEEEccC-CCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407 15 HDLEFVRLSHLNLNG--EFPNWLLENNTKLESNFLLN-NSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSL 91 (528)
Q Consensus 15 ~~L~~L~Ls~~~~~~--~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L 91 (528)
.++++|+|++|.+.+ .+|.. +.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.. +++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCC
Confidence 689999999999988 78876 58999999999995 8999889999999999999999999998888887776 8899
Q ss_pred ceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCC-CCCEEEccCCcCcccCCccCCCCCCCCEEEcc
Q 038407 92 KYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCV-DLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD 170 (528)
Q Consensus 92 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 170 (528)
++|++++|.+++..|..|..+++|++|++++|++++.+|..+. .++ +|++|++++|++++..+..+..++ |++|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 9999999999988999999999999999999999888888775 566 899999999999988888888887 9999999
Q ss_pred CCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccc
Q 038407 171 GNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIY 249 (528)
Q Consensus 171 ~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 249 (528)
+|.+.+..+ .+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++..|..+..+++|++|++++|++++..
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 999986655 788999999999999999866554 788899999999999999899999999999999999999999776
Q ss_pred cchhhhccccceeeeccCcc
Q 038407 250 HHASILSLSKDQLVLAHNNF 269 (528)
Q Consensus 250 ~~~~~~~~~~~~L~L~~n~l 269 (528)
+.. ......+.+++++|+.
T Consensus 285 p~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 285 PQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCS-TTGGGSCGGGTCSSSE
T ss_pred CCC-ccccccChHHhcCCCC
Confidence 664 3334448899999973
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.5e-34 Score=289.59 Aligned_cols=355 Identities=17% Similarity=0.140 Sum_probs=200.8
Q ss_pred CCCCEEEccCCCCccccCcC-ccCCCCCCEEEccCCcCccc----cChhhhhcCCCCceeeccCCcCcccCCccc-cCCC
Q 038407 40 TKLESNFLLNNSLPGLFLLP-IHCHKSLMLLDVSNNNLQGH----IPVKIGDFLPSLKYFNISMNAFDSSIPTSF-GNMN 113 (528)
Q Consensus 40 ~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~L~ls~n~l~~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~ 113 (528)
++|++|+|++|.++...... +..+++|++|++++|.+++. ++..+.. +++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-NPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHT-CTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHh-CCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 34555666655554432222 44455556666665555421 1222222 4555555555555543222221 1222
Q ss_pred ----CCCEEEccCCcccc----cCChhhhhCCCCCCEEEccCCcCcccCCccC-----CCCCCCCEEEccCCcCCccC--
Q 038407 114 ----FLISLDLSNNQLTG----EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRN-----FNLTNLRRLQLDGNHFREIL-- 178 (528)
Q Consensus 114 ----~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~-- 178 (528)
+|++|++++|.++. .++.. +..+++|++|++++|.+++..+..+ ...++|++|++++|.+....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 45555555555542 11222 2345555555555555443211111 12334555555555544321
Q ss_pred ---cccCCCCCCCEEEccCCccCccCCcccc-----CCCCCCeeecCCceeecc----CcccccCCCCCCEEEcccCccc
Q 038407 179 ---ESLSKCSSLEGLYLSDNNLSGKIPRWLG-----NLSMLQHIILPENHFEGP----IPMEFCQLDSLQILNISDNNIS 246 (528)
Q Consensus 179 ---~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~ 246 (528)
..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|++.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 1333445555555555554432222221 133455555555555432 2334444455555555555443
Q ss_pred ccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcC----CCCCCcCCccccccccCCCCCCCCcc
Q 038407 247 GIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGH----IPPCLDNTTLHESYIDTSSPESSETS 322 (528)
Q Consensus 247 ~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~ 322 (528)
+..... ..+..+..+++|+.|++++|.+++. ++..+
T Consensus 241 ~~~~~~-------------------l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--------------------- 280 (461)
T 1z7x_W 241 DVGMAE-------------------LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL--------------------- 280 (461)
T ss_dssp HHHHHH-------------------HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH---------------------
T ss_pred hHHHHH-------------------HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH---------------------
Confidence 221100 1122344689999999999988632 11111
Q ss_pred ccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhcc-----ccCCEEeCCCcccccc-
Q 038407 323 FVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNL-----TRIQTLNLSYNNLTGS- 396 (528)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~- 396 (528)
..+++|++|++++|.+.+..+..+... ++|+.|++++|.+++.
T Consensus 281 -------------------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 281 -------------------------------RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp -------------------------------HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred -------------------------------hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 114589999999999876544444433 6999999999999865
Q ss_pred ---CCccccCCCCCCeeeCcCCcCcccCcccccc-----CCCCCEEEccCCCCcc----CCCCCCcccCCCCcCcccCCC
Q 038407 397 ---IPSTFSNLKHIKSLDLSYNKLDGKIPLQLVE-----LNTLAVFNVAHNNLSG----KIPEWTAQFATFNESSYEGNP 464 (528)
Q Consensus 397 ---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~ls~N~l~~----~~p~~~~~~~~l~~l~l~~Np 464 (528)
++..+..+++|++|+|++|++++..+..+.. .++|++|++++|+++. .+|..+..+++|+.+++++|+
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 4566778899999999999998766655543 6799999999999986 677777788999999999998
Q ss_pred CCC
Q 038407 465 FLC 467 (528)
Q Consensus 465 ~~c 467 (528)
...
T Consensus 410 i~~ 412 (461)
T 1z7x_W 410 LGD 412 (461)
T ss_dssp CCH
T ss_pred CCH
Confidence 654
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=261.46 Aligned_cols=252 Identities=23% Similarity=0.270 Sum_probs=183.5
Q ss_pred CCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCC
Q 038407 140 LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE 218 (528)
Q Consensus 140 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 218 (528)
.+.++.++..++. +|..+. ++++.|++++|.+..+++ .|..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4455555555553 333322 455566666666555543 555556666666666655555555555556666666666
Q ss_pred ceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407 219 NHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298 (528)
Q Consensus 219 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 298 (528)
|+++...+..|..+++|++|++++|++. ...+..|..+++|+.|++++|...+.++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~------------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE------------------------SIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCC------------------------EECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccc------------------------ccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 6655444445555555666655555554 4445578889999999999865443333
Q ss_pred C-CCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhh
Q 038407 299 P-CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQI 377 (528)
Q Consensus 299 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 377 (528)
. .+.. +++|++|++++|.++ .+| .+
T Consensus 178 ~~~~~~----------------------------------------------------l~~L~~L~L~~n~l~-~~~-~~ 203 (440)
T 3zyj_A 178 EGAFEG----------------------------------------------------LSNLRYLNLAMCNLR-EIP-NL 203 (440)
T ss_dssp TTTTTT----------------------------------------------------CSSCCEEECTTSCCS-SCC-CC
T ss_pred cchhhc----------------------------------------------------ccccCeecCCCCcCc-ccc-cc
Confidence 2 2322 458999999999998 455 47
Q ss_pred hccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCc
Q 038407 378 GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNE 457 (528)
Q Consensus 378 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~ 457 (528)
..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 88999999999999999988999999999999999999999999999999999999999999999888888888999999
Q ss_pred CcccCCCCCCCCCCC
Q 038407 458 SSYEGNPFLCGLPLP 472 (528)
Q Consensus 458 l~l~~Np~~c~~~l~ 472 (528)
+++++|||.|+|.+.
T Consensus 284 L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 284 IHLHHNPWNCNCDIL 298 (440)
T ss_dssp EECCSSCEECSSTTH
T ss_pred EEcCCCCccCCCCch
Confidence 999999999999653
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2.6e-30 Score=261.23 Aligned_cols=252 Identities=21% Similarity=0.225 Sum_probs=186.5
Q ss_pred CCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCC
Q 038407 140 LEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE 218 (528)
Q Consensus 140 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 218 (528)
...++.++..++. +|..+. +++++|++++|.+..+++ .|..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3456666555553 333222 456666666666666543 556666666666666666655555666666666666666
Q ss_pred ceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407 219 NHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298 (528)
Q Consensus 219 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 298 (528)
|++++..+..|..+++|++|++++|++.+ ..+..|..+++|+.|++++|...+.++
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCccccC
Confidence 66665555556666666666666665543 444568889999999999865443333
Q ss_pred C-CCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhh
Q 038407 299 P-CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQI 377 (528)
Q Consensus 299 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 377 (528)
. .+.. +++|++|++++|.+++ +| .+
T Consensus 189 ~~~~~~----------------------------------------------------l~~L~~L~L~~n~l~~-~~-~~ 214 (452)
T 3zyi_A 189 EGAFEG----------------------------------------------------LFNLKYLNLGMCNIKD-MP-NL 214 (452)
T ss_dssp TTTTTT----------------------------------------------------CTTCCEEECTTSCCSS-CC-CC
T ss_pred hhhccC----------------------------------------------------CCCCCEEECCCCcccc-cc-cc
Confidence 2 2222 4579999999999985 44 57
Q ss_pred hccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCc
Q 038407 378 GNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNE 457 (528)
Q Consensus 378 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~ 457 (528)
..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 88999999999999999988999999999999999999999998999999999999999999999888888888999999
Q ss_pred CcccCCCCCCCCCCC
Q 038407 458 SSYEGNPFLCGLPLP 472 (528)
Q Consensus 458 l~l~~Np~~c~~~l~ 472 (528)
+++++|||.|+|.+.
T Consensus 295 L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 295 LHLHHNPWNCDCDIL 309 (452)
T ss_dssp EECCSSCEECSTTTH
T ss_pred EEccCCCcCCCCCch
Confidence 999999999999754
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.9e-30 Score=246.31 Aligned_cols=234 Identities=21% Similarity=0.263 Sum_probs=143.5
Q ss_pred CCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCcc--CCccccCCCCCCeeecCCceeeccCcccccCCCCCCEE
Q 038407 162 TNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGK--IPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQIL 238 (528)
Q Consensus 162 ~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 238 (528)
++|++|++++|.+..++. .+..+++|++|++++|.+... .+..+..+++|++|++++|.++ .++..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 345555555555554444 245555555555555555421 1344445566666666666665 334455666666666
Q ss_pred EcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCC
Q 038407 239 NISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPES 318 (528)
Q Consensus 239 ~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~ 318 (528)
++++|++.+..+ ...+..+++|+.|++++|.+.+..+..+..
T Consensus 107 ~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------- 148 (306)
T 2z66_A 107 DFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------- 148 (306)
T ss_dssp ECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTT---------------
T ss_pred ECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccchhhccc---------------
Confidence 666666554321 123455666666666666665444443332
Q ss_pred CCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCcc-CCChhhhccccCCEEeCCCccccccC
Q 038407 319 SETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIG-QIPPQIGNLTRIQTLNLSYNNLTGSI 397 (528)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~ 397 (528)
+++|++|++++|.+.+ ..|..+..+++|++|++++|++++..
T Consensus 149 -------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 149 -------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191 (306)
T ss_dssp -------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred -------------------------------------CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC
Confidence 2356666666666654 45666677777777777777777666
Q ss_pred CccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccC-CCCcCcccCCCCCCCCCC
Q 038407 398 PSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFA-TFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 398 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~-~l~~l~l~~Np~~c~~~l 471 (528)
|..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..|..+..++ +|+.+++++||+.|+|++
T Consensus 192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 77777777777777777777766666677777777777777777777776666663 677777777777777654
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=3.5e-30 Score=251.74 Aligned_cols=279 Identities=24% Similarity=0.241 Sum_probs=213.1
Q ss_pred CCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEE
Q 038407 112 MNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGL 190 (528)
Q Consensus 112 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L 190 (528)
++.....+.+++.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.+..+++ .+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 445556788888888 8887654 578999999999887666678888999999999998888765 68888899999
Q ss_pred EccCCccCccCCccccCCCCCCeeecCCceeeccCc-ccccCCCCCCEEEcccCc-ccccccchhhhccccceeeeccCc
Q 038407 191 YLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIP-MEFCQLDSLQILNISDNN-ISGIYHHASILSLSKDQLVLAHNN 268 (528)
Q Consensus 191 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~L~~n~ 268 (528)
++++|.+++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++|. +.++
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-------------------- 165 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI-------------------- 165 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc--------------------
Confidence 999998886555558888889999999988885444 467888888888888873 4433
Q ss_pred ccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeecccc
Q 038407 269 FEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA 348 (528)
Q Consensus 269 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (528)
.+..+..+++|+.|++++|.+++..|..+..
T Consensus 166 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~--------------------------------------------- 196 (353)
T 2z80_A 166 ----QRKDFAGLTFLEELEIDASDLQSYEPKSLKS--------------------------------------------- 196 (353)
T ss_dssp ----CTTTTTTCCEEEEEEEEETTCCEECTTTTTT---------------------------------------------
T ss_pred ----CHHHccCCCCCCEEECCCCCcCccCHHHHhc---------------------------------------------
Confidence 3445677888888888888887666665544
Q ss_pred ccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccc---cCCCCCCeeeCcCCcCcc----cC
Q 038407 349 YTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTF---SNLKHIKSLDLSYNKLDG----KI 421 (528)
Q Consensus 349 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~----~~ 421 (528)
+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+ ...+.++.++|+++.+++ .+
T Consensus 197 -------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 197 -------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp -------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred -------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 3368888888888764333345567888888888888886655443 346678888888888875 36
Q ss_pred ccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407 422 PLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470 (528)
Q Consensus 422 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~ 470 (528)
|..+..+++|++|++++|+++...+..+..+++|+.+++++||+.|+|+
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 7778889999999999999984433335788999999999999999886
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=4e-30 Score=251.28 Aligned_cols=205 Identities=18% Similarity=0.171 Sum_probs=129.4
Q ss_pred CCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCE
Q 038407 63 HKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEY 142 (528)
Q Consensus 63 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 142 (528)
|+.....+.+++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEH 104 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCE
Confidence 344445666666666 5555443 36666666666666555556666666666666666666 343333345666666
Q ss_pred EEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc--ccCCCCCCCEEEccCC-ccCccCCccccCCCCCCeeecCCc
Q 038407 143 LLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE--SLSKCSSLEGLYLSDN-NLSGKIPRWLGNLSMLQHIILPEN 219 (528)
Q Consensus 143 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n 219 (528)
|++++|.+++..+..+.++++|++|++++|.+..++. .+..+++|++|++++| .+....+..+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 6666666664333335566666666666666666655 5666777777777776 355555566777777777777777
Q ss_pred eeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcC
Q 038407 220 HFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGH 296 (528)
Q Consensus 220 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 296 (528)
.+++..|..+..+++|++|++++|++..+.. ..+..+++|+.|++++|.+++.
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLE------------------------IFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHH------------------------HHHHHTTTEEEEEEESCBCTTC
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchh------------------------hhhhhcccccEEECCCCccccc
Confidence 7777667777777777777777777653321 1233466777777777777643
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.1e-29 Score=243.12 Aligned_cols=86 Identities=28% Similarity=0.357 Sum_probs=50.1
Q ss_pred cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCC-CCCEEEc
Q 038407 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELN-TLAVFNV 436 (528)
Q Consensus 358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l 436 (528)
+|++|++++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|++|+|++|++++..|..+..++ +|++|++
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 445555555555544455555556666666666666655555556666666666666666665565565553 5666666
Q ss_pred cCCCCcc
Q 038407 437 AHNNLSG 443 (528)
Q Consensus 437 s~N~l~~ 443 (528)
++|++++
T Consensus 256 ~~N~~~~ 262 (306)
T 2z66_A 256 TQNDFAC 262 (306)
T ss_dssp TTCCEEC
T ss_pred cCCCeec
Confidence 6666654
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=8.6e-29 Score=234.35 Aligned_cols=229 Identities=20% Similarity=0.225 Sum_probs=146.0
Q ss_pred CEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCc
Q 038407 165 RRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNN 244 (528)
Q Consensus 165 ~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~ 244 (528)
++++.+++.++.+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45566666666555432 3466666666666665555566666667777777666666656666666777777766665
Q ss_pred -ccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccc
Q 038407 245 -ISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSF 323 (528)
Q Consensus 245 -l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (528)
+..+ .+..+..+++|++|++++|.+++..|..+..
T Consensus 92 ~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------- 127 (285)
T 1ozn_A 92 QLRSV------------------------DPATFHGLGRLHTLHLDRCGLQELGPGLFRG-------------------- 127 (285)
T ss_dssp TCCCC------------------------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------------------
T ss_pred Ccccc------------------------CHHHhcCCcCCCEEECCCCcCCEECHhHhhC--------------------
Confidence 4432 2334555666666666666665444443332
Q ss_pred cccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccC
Q 038407 324 VDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSN 403 (528)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 403 (528)
+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..
T Consensus 128 --------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 175 (285)
T 1ozn_A 128 --------------------------------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175 (285)
T ss_dssp --------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred --------------------------------CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence 235666666666666555555666777777777777777655556677
Q ss_pred CCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407 404 LKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 404 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l 471 (528)
+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.+++++||+.|+|+.
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 77777777777777766666777777777777777777765555555667777777777777777654
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=6.9e-28 Score=242.60 Aligned_cols=248 Identities=24% Similarity=0.261 Sum_probs=188.6
Q ss_pred CCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEcc
Q 038407 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLS 193 (528)
Q Consensus 115 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~ 193 (528)
.+.++..+..++ .+|..+. ++++.|++++|.++...+..|.++++|++|++++|.+..+++ .|..+++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456666677776 7776543 567778888887777666777788888888888888877764 67778888888888
Q ss_pred CCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccC
Q 038407 194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV 273 (528)
Q Consensus 194 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~ 273 (528)
+|.++...+..|..+++|++|++++|.++...+..|..+++|++|++++|...+. ..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-----------------------i~ 177 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-----------------------IS 177 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----------------------EC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-----------------------eC
Confidence 8888766666778888888888888888877677788888888888887432211 22
Q ss_pred cccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccc
Q 038407 274 PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG 353 (528)
Q Consensus 274 ~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (528)
+..|..+++|+.|++++|.++ .+|. +..
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~-------------------------------------------------- 205 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLR-EIPN-LTP-------------------------------------------------- 205 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCS-SCCC-CTT--------------------------------------------------
T ss_pred cchhhcccccCeecCCCCcCc-cccc-cCC--------------------------------------------------
Confidence 335677888888888888776 2331 111
Q ss_pred cccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCE
Q 038407 354 RVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAV 433 (528)
Q Consensus 354 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 433 (528)
+++|++|++++|.+++..|..|..+++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.
T Consensus 206 --l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 206 --LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp --CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred --CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 447888888888888777888888888888888888888888888888888888888888888777777888888888
Q ss_pred EEccCCCCcc
Q 038407 434 FNVAHNNLSG 443 (528)
Q Consensus 434 L~ls~N~l~~ 443 (528)
|++++|++..
T Consensus 284 L~L~~Np~~C 293 (440)
T 3zyj_A 284 IHLHHNPWNC 293 (440)
T ss_dssp EECCSSCEEC
T ss_pred EEcCCCCccC
Confidence 8888888754
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.2e-28 Score=243.31 Aligned_cols=248 Identities=22% Similarity=0.229 Sum_probs=189.1
Q ss_pred CCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEcc
Q 038407 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLS 193 (528)
Q Consensus 115 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~ 193 (528)
...++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+..+++ .|..+++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456666666666 6666442 567778888887777667777788888888888888877764 67778888888888
Q ss_pred CCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccC
Q 038407 194 DNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEV 273 (528)
Q Consensus 194 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~ 273 (528)
+|.++...+..|..+++|++|++++|.++...+..|..+++|+.|++++|...+. ..
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-----------------------i~ 188 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY-----------------------IS 188 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----------------------EC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc-----------------------cC
Confidence 8888766666777888888888888888876666788888888888887432211 22
Q ss_pred cccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccc
Q 038407 274 PIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRG 353 (528)
Q Consensus 274 ~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (528)
+..|..+++|+.|++++|.+++. |. +..
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~-------------------------------------------------- 216 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDM-PN-LTP-------------------------------------------------- 216 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSC-CC-CTT--------------------------------------------------
T ss_pred hhhccCCCCCCEEECCCCccccc-cc-ccc--------------------------------------------------
Confidence 23567788888888888887632 21 111
Q ss_pred cccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCE
Q 038407 354 RVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAV 433 (528)
Q Consensus 354 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 433 (528)
+++|++|++++|.+++..|..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.
T Consensus 217 --l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 217 --LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp --CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred --cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 457888888888888888888888889999999999888888888888889999999999888777777888888999
Q ss_pred EEccCCCCcc
Q 038407 434 FNVAHNNLSG 443 (528)
Q Consensus 434 L~ls~N~l~~ 443 (528)
|++++|++..
T Consensus 295 L~L~~Np~~C 304 (452)
T 3zyi_A 295 LHLHHNPWNC 304 (452)
T ss_dssp EECCSSCEEC
T ss_pred EEccCCCcCC
Confidence 9999888754
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.3e-31 Score=277.81 Aligned_cols=413 Identities=12% Similarity=0.037 Sum_probs=228.9
Q ss_pred cCchhhhCCCCCCEEEccCCcCc---ccCC-----------hhhhhcCCCCCEEEccCCCCccccCcCccC-CC-CCCEE
Q 038407 6 HSPNFFYHQHDLEFVRLSHLNLN---GEFP-----------NWLLENNTKLESNFLLNNSLPGLFLLPIHC-HK-SLMLL 69 (528)
Q Consensus 6 ~~~~~l~~~~~L~~L~Ls~~~~~---~~~~-----------~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~~-~L~~L 69 (528)
..+..+..+++|++|+++++... +.+| ..++.++++|++|+|++|.+++..+..+.. ++ +|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 34455677788888888765321 1222 122346788888888888776654444444 33 38888
Q ss_pred EccCCc-CccccChhhhhcCCCCceeeccCCcCcccC----CccccCCCCCCEEEccCCcccc----cCChhhhhCCCCC
Q 038407 70 DVSNNN-LQGHIPVKIGDFLPSLKYFNISMNAFDSSI----PTSFGNMNFLISLDLSNNQLTG----EIPEHLAMGCVDL 140 (528)
Q Consensus 70 ~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L 140 (528)
++++|. ++......+...+++|++|++++|.+++.. +..+..+++|++|++++|.+++ .++ .++.++++|
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L 222 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSL 222 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCC
Confidence 887765 221111122233677888888877765442 2234566778888887777751 122 223457778
Q ss_pred CEEEccCCcCcccCCccCCCCCCCCEEEccCCcCC----ccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeec
Q 038407 141 EYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR----EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIIL 216 (528)
Q Consensus 141 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 216 (528)
++|++++|.+.+ .+..+..+++|++|++++.... .....+..+++|+.|+++++... .++..+..+++|++|++
T Consensus 223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~L 300 (592)
T 3ogk_B 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDL 300 (592)
T ss_dssp CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEE
T ss_pred cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEec
Confidence 888888777664 4455666777777777643221 11224556667777777665332 45556666677777777
Q ss_pred CCceeeccCc-ccccCCCCCCEEEcccCcccccccchhhhc-cccceeeecc-----------Cccccc-CcccccCCCC
Q 038407 217 PENHFEGPIP-MEFCQLDSLQILNISDNNISGIYHHASILS-LSKDQLVLAH-----------NNFEGE-VPIQLCQLNK 282 (528)
Q Consensus 217 ~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~L~~-----------n~l~~~-~~~~l~~l~~ 282 (528)
++|.+++... ..+..+++|++|+++ +.+........... ..+++|++++ +.+++. ++.....+++
T Consensus 301 s~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (592)
T 3ogk_B 301 LYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE 379 (592)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT
T ss_pred CCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc
Confidence 7776553322 234566777777776 33322211111122 2336666662 344432 1222344667
Q ss_pred CCEEEccCCcCCcCCCCCCcC-Cc-cccccccCCCCCCCCccccccccccccccccccceeeeec--cccccccccccCc
Q 038407 283 LQLIDLSNNILSGHIPPCLDN-TT-LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTK--NIAYTYRGRVISY 358 (528)
Q Consensus 283 L~~L~ls~n~l~~~~p~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 358 (528)
|+.|+++.|.+++..+..+.. .+ +....+...... ..++.. ..........+++
T Consensus 380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~----------------------n~l~~~p~~~~~~~~~~~~~~ 437 (592)
T 3ogk_B 380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE----------------------ERITDLPLDNGVRSLLIGCKK 437 (592)
T ss_dssp CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC----------------------SCCSSCCCHHHHHHHHHHCTT
T ss_pred CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC----------------------ccccCchHHHHHHHHHHhCCC
Confidence 777777666665432221111 00 000000000000 000000 0000000112567
Q ss_pred ccEEECCCCc--CccCCChhhh-ccccCCEEeCCCccccc-cCCccccCCCCCCeeeCcCCcCccc-CccccccCCCCCE
Q 038407 359 LSELDLSYNK--LIGQIPPQIG-NLTRIQTLNLSYNNLTG-SIPSTFSNLKHIKSLDLSYNKLDGK-IPLQLVELNTLAV 433 (528)
Q Consensus 359 L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 433 (528)
|++|++++|. +++..+..+. .+++|+.|+|++|++++ .++..+.++++|++|+|++|++++. ++..+..+++|++
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 8999987544 5544344443 37889999999998875 3344557888999999999998654 3444567889999
Q ss_pred EEccCCCCccC
Q 038407 434 FNVAHNNLSGK 444 (528)
Q Consensus 434 L~ls~N~l~~~ 444 (528)
|++++|+++..
T Consensus 518 L~ls~n~it~~ 528 (592)
T 3ogk_B 518 LWVQGYRASMT 528 (592)
T ss_dssp EEEESCBCCTT
T ss_pred eECcCCcCCHH
Confidence 99999997754
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.6e-28 Score=228.72 Aligned_cols=256 Identities=22% Similarity=0.247 Sum_probs=212.9
Q ss_pred CCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeec
Q 038407 17 LEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNI 96 (528)
Q Consensus 17 L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L 96 (528)
-++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. +++|++|++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l 87 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDL 87 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEEC
T ss_pred CeEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC-ccCCCEEeC
Confidence 368899998887 778643 579999999999999888888999999999999999998444555544 899999999
Q ss_pred cCCc-CcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCC
Q 038407 97 SMNA-FDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR 175 (528)
Q Consensus 97 ~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 175 (528)
++|. +....+..|..+++|++|++++|.++ .++...+.++++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence 9997 88777889999999999999999998 565555568999999999999999766667889999999999999999
Q ss_pred ccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhh
Q 038407 176 EILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASI 254 (528)
Q Consensus 176 ~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 254 (528)
.+++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++....+....
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~ 246 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHH
Confidence 9887 588999999999999999988899999999999999999999987777899999999999999998765443221
Q ss_pred hccccceeeeccCcccccCcccccC
Q 038407 255 LSLSKDQLVLAHNNFEGEVPIQLCQ 279 (528)
Q Consensus 255 ~~~~~~~L~L~~n~l~~~~~~~l~~ 279 (528)
. ...+.+....+.+....|..+.+
T Consensus 247 ~-~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 247 W-AWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp H-HHHHHCCSEECCCBEEESGGGTT
T ss_pred H-HHHHhcccccCccccCCchHhCC
Confidence 1 11133445555665555655543
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3e-28 Score=234.72 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=41.8
Q ss_pred cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA 437 (528)
Q Consensus 358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls 437 (528)
+|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|++|+|++|++.+.+|..+..+++|+.+++.
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 44445555444444444445555555555555555444555455555555555555555555555555555555555554
Q ss_pred CCC
Q 038407 438 HNN 440 (528)
Q Consensus 438 ~N~ 440 (528)
.|.
T Consensus 310 ~~~ 312 (328)
T 4fcg_A 310 PHL 312 (328)
T ss_dssp GGG
T ss_pred HHH
Confidence 443
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=6e-28 Score=232.63 Aligned_cols=225 Identities=20% Similarity=0.243 Sum_probs=160.0
Q ss_pred CCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEc
Q 038407 113 NFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYL 192 (528)
Q Consensus 113 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L 192 (528)
.+++.|++++|.++ .+|..++ .+++|++|++++|.++ .++..+..+++|++|++++|.+..++..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 44555555555554 4554443 3555555555555555 3444555555555555555555555555556666666666
Q ss_pred cCCccCccCCcccc---------CCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceee
Q 038407 193 SDNNLSGKIPRWLG---------NLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLV 263 (528)
Q Consensus 193 ~~n~l~~~~~~~l~---------~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 263 (528)
++|.+.+.+|..+. .+++|++|++++|+++ .+|..+..+++|++|++++|++.++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l--------------- 221 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL--------------- 221 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC---------------
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC---------------
Confidence 66555555554443 4777888888888777 6677777778888888777776643
Q ss_pred eccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeee
Q 038407 264 LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFT 343 (528)
Q Consensus 264 L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (528)
|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 222 ----------~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~---------------------------------------- 251 (328)
T 4fcg_A 222 ----------GPAIHHLPKLEELDLRGCTALRNYPPIFGG---------------------------------------- 251 (328)
T ss_dssp ----------CGGGGGCTTCCEEECTTCTTCCBCCCCTTC----------------------------------------
T ss_pred ----------chhhccCCCCCEEECcCCcchhhhHHHhcC----------------------------------------
Confidence 335778889999999999888888776654
Q ss_pred eccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCc
Q 038407 344 TKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD 418 (528)
Q Consensus 344 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 418 (528)
+++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..++++++|+.+++..+.+.
T Consensus 252 ------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 252 ------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 347999999999888899999999999999999999999999999999999999999987765
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=3.3e-27 Score=244.44 Aligned_cols=134 Identities=23% Similarity=0.254 Sum_probs=66.2
Q ss_pred CCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEc
Q 038407 41 KLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDL 120 (528)
Q Consensus 41 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (528)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++. +|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 4666666666665 3333332 56666666666665 4544 24556666666666553 232 4455555565
Q ss_pred cCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccC
Q 038407 121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLS 198 (528)
Q Consensus 121 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~ 198 (528)
++|.++ .+|. .+++|+.|++++|.++. ++. .+++|++|++++|.+..++. .+++|+.|++++|.++
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCC
Confidence 555555 4443 23455555555555543 221 12444444444444444332 1233444444444443
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5e-31 Score=276.45 Aligned_cols=416 Identities=12% Similarity=0.052 Sum_probs=284.7
Q ss_pred CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCc---cccCcCcc------------CCCCCCEEEccCCcCccccCh
Q 038407 18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLP---GLFLLPIH------------CHKSLMLLDVSNNNLQGHIPV 82 (528)
Q Consensus 18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~------------~~~~L~~L~ls~n~l~~~~~~ 82 (528)
+.+.+.++ +. ..|..++..+++|++|++++|... +.+|..+. .+++|++|++++|.+++..+.
T Consensus 53 ~~l~~~~~-~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~ 130 (592)
T 3ogk_B 53 EHVTMALC-YT-ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD 130 (592)
T ss_dssp CEEEESCG-GG-SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred cEEEEeec-cc-cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH
Confidence 34555444 33 456677889999999999887532 22332332 689999999999998866555
Q ss_pred hhhhcCCC-CceeeccCCc-Ccc-cCCccccCCCCCCEEEccCCcccccCCh---hhhhCCCCCCEEEccCCcCcc----
Q 038407 83 KIGDFLPS-LKYFNISMNA-FDS-SIPTSFGNMNFLISLDLSNNQLTGEIPE---HLAMGCVDLEYLLLSNNSLEG---- 152 (528)
Q Consensus 83 ~~~~~l~~-L~~L~L~~n~-i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~---- 152 (528)
.+...+++ |++|++++|. ++. ..+....++++|++|++++|.+++.-.. .+...+++|++|++++|.+++
T Consensus 131 ~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~ 210 (592)
T 3ogk_B 131 RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK 210 (592)
T ss_dssp HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHH
T ss_pred HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHH
Confidence 56554455 9999999986 221 1222334789999999999998744222 244578999999999999872
Q ss_pred cCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccC---ccCCccccCCCCCCeeecCCceeeccCcccc
Q 038407 153 HLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLS---GKIPRWLGNLSMLQHIILPENHFEGPIPMEF 229 (528)
Q Consensus 153 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l 229 (528)
..+..+.++++|++|++++|.+.+++..+..+++|++|+++..... ......+..+++|+.++++++... .++..+
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~ 289 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILF 289 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGG
T ss_pred HHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHH
Confidence 2333445789999999999999988878888999999999864332 233456778899999999986443 567778
Q ss_pred cCCCCCCEEEcccCcccccccchhhhc-cccceeeeccCcccccCcccccCCCCCCEEEccC-----------CcCCcCC
Q 038407 230 CQLDSLQILNISDNNISGIYHHASILS-LSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSN-----------NILSGHI 297 (528)
Q Consensus 230 ~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~-----------n~l~~~~ 297 (528)
..+++|++|++++|.+++......... ..+++|+++++...+.++..+..+++|++|++++ +.+++..
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 889999999999999765433222233 3448999985444444555567789999999994 4443210
Q ss_pred CCC-CcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccc---cccccccCcccEEECC----CCcC
Q 038407 298 PPC-LDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAY---TYRGRVISYLSELDLS----YNKL 369 (528)
Q Consensus 298 p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~Ls----~n~l 369 (528)
... ....+ ....+.+....+.. ...+..+++|++|+++ .|.+
T Consensus 370 ~~~l~~~~~------------------------------~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 370 LIALAQGCQ------------------------------ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HHHHHHHCT------------------------------TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred HHHHHhhCc------------------------------cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 000 00000 00111111111111 1111236789999996 6677
Q ss_pred ccC-----CChhhhccccCCEEeCCCcc--ccccCCccc-cCCCCCCeeeCcCCcCccc-CccccccCCCCCEEEccCCC
Q 038407 370 IGQ-----IPPQIGNLTRIQTLNLSYNN--LTGSIPSTF-SNLKHIKSLDLSYNKLDGK-IPLQLVELNTLAVFNVAHNN 440 (528)
Q Consensus 370 ~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ls~N~ 440 (528)
++. ++..+.++++|+.|++++|. +++..+..+ ..+++|++|++++|++++. ++..+..+++|++|++++|+
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 753 33447789999999998654 665444444 3489999999999999863 45556789999999999999
Q ss_pred CccC-CCCCCcccCCCCcCcccCCCCC
Q 038407 441 LSGK-IPEWTAQFATFNESSYEGNPFL 466 (528)
Q Consensus 441 l~~~-~p~~~~~~~~l~~l~l~~Np~~ 466 (528)
++.. ++.....+++|+.+++++|+..
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 8644 3333446899999999999843
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.9e-26 Score=237.34 Aligned_cols=155 Identities=27% Similarity=0.316 Sum_probs=80.5
Q ss_pred CCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEE
Q 038407 65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLL 144 (528)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 144 (528)
+++.|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|+++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 3555666665555 5554432 455666666665552 232 3455666666666555 4444 345566666
Q ss_pred ccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeecc
Q 038407 145 LSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGP 224 (528)
Q Consensus 145 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 224 (528)
+++|.+++ ++. .+++|++|++++|.++.++.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 66665554 222 345555666666655555432 2555566666655552 222 23455556666655553
Q ss_pred CcccccCCCCCCEEEcccCcccc
Q 038407 225 IPMEFCQLDSLQILNISDNNISG 247 (528)
Q Consensus 225 ~~~~l~~l~~L~~L~L~~n~l~~ 247 (528)
+| ..+++|+.|++++|++++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC
T ss_pred Cc---ccCCCCcEEECCCCCCCC
Confidence 23 234555555555555543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=7.2e-29 Score=238.34 Aligned_cols=264 Identities=20% Similarity=0.215 Sum_probs=156.2
Q ss_pred CEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEcc
Q 038407 67 MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLS 146 (528)
Q Consensus 67 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 146 (528)
+..+++.+.+. ..+..++..+++|++|++++|.+++..|..|.++++|++|++++|.+++. +. +..+++|++|+++
T Consensus 13 ~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 13 KIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE--ETTCTTCCEEECC
T ss_pred eEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh--hhhcCCCCEEECc
Confidence 34455555554 33344444455566666666666555445555555555555555555422 21 2344444444444
Q ss_pred CCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCc
Q 038407 147 NNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIP 226 (528)
Q Consensus 147 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 226 (528)
+|.++ +++. .++|++|++++|.+.+..+. .+++|++|++++|++++..+
T Consensus 89 ~n~l~------------------------~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 89 NNYVQ------------------------ELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SSEEE------------------------EEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred CCccc------------------------cccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc
Confidence 44444 3321 14455555555555433222 23456666666666665555
Q ss_pred ccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCcc
Q 038407 227 MEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTL 306 (528)
Q Consensus 227 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~ 306 (528)
..+..+++|++|++++|++.+..+. ..+..+++|++|++++|.+++. +...
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------~~~~~l~~L~~L~L~~N~l~~~-~~~~----- 188 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFA-----------------------ELAASSDTLEHLNLQYNFIYDV-KGQV----- 188 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGG-----------------------GGGGGTTTCCEEECTTSCCCEE-ECCC-----
T ss_pred hhhhccCCCCEEECCCCCCCcccHH-----------------------HHhhccCcCCEEECCCCcCccc-cccc-----
Confidence 5556666666666666665543221 1123466777777777776532 1100
Q ss_pred ccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEE
Q 038407 307 HESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTL 386 (528)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 386 (528)
.+++|++|++++|.+++ +|..+..+++|+.|
T Consensus 189 ------------------------------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 219 (317)
T 3o53_A 189 ------------------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (317)
T ss_dssp ------------------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred ------------------------------------------------ccccCCEEECCCCcCCc-chhhhcccCcccEE
Confidence 13468888888888874 45558888888888
Q ss_pred eCCCccccccCCccccCCCCCCeeeCcCCcCc-ccCccccccCCCCCEEEccCC-CCccC
Q 038407 387 NLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLD-GKIPLQLVELNTLAVFNVAHN-NLSGK 444 (528)
Q Consensus 387 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ls~N-~l~~~ 444 (528)
+|++|+++ .+|..+..+++|+.|++++|++. +..|..+..+++|+.+++++| .+.+.
T Consensus 220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 88888888 45677888888888888888888 667777888888888888744 34443
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=3.4e-30 Score=270.31 Aligned_cols=410 Identities=17% Similarity=0.141 Sum_probs=222.3
Q ss_pred hhhhCCCCCCEEEccCCcCcccC---C-----------hhhhhcCCCCCEEEccCCCCccccCcCcc-CCCCCCEEEccC
Q 038407 9 NFFYHQHDLEFVRLSHLNLNGEF---P-----------NWLLENNTKLESNFLLNNSLPGLFLLPIH-CHKSLMLLDVSN 73 (528)
Q Consensus 9 ~~l~~~~~L~~L~Ls~~~~~~~~---~-----------~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~~L~~L~ls~ 73 (528)
..+..+++|++|+++++.....+ | ..++..+++|++|+|++|.+++..+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 34678899999999987532221 1 23356789999999999998876665564 689999999999
Q ss_pred C-cCccccChhhhhcCCCCceeeccCCcCcccCCcccc----CCCCCCEEEccCCcccccCCh----hhhhCCCCCCEEE
Q 038407 74 N-NLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG----NMNFLISLDLSNNQLTGEIPE----HLAMGCVDLEYLL 144 (528)
Q Consensus 74 n-~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~ 144 (528)
| .++......+...+++|++|++++|.+++..+..+. .+++|++|++++|. . .+.. .+...+++|++|+
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEE
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEe
Confidence 8 555322234444489999999999998765544443 66799999999987 2 3332 2334579999999
Q ss_pred ccCC-cCcccCCccCCCCCCCCEEEccCCc-------CCccCcccCCCCCCCEE-EccCCccCccCCccccCCCCCCeee
Q 038407 145 LSNN-SLEGHLFPRNFNLTNLRRLQLDGNH-------FREILESLSKCSSLEGL-YLSDNNLSGKIPRWLGNLSMLQHII 215 (528)
Q Consensus 145 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-------~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~ 215 (528)
+++| .+.+ ++..+..+++|++|+++.+. +.+++..+.++++|+.| .+.+... ..++..+..+++|++|+
T Consensus 218 L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~ 295 (594)
T 2p1m_B 218 LNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLN 295 (594)
T ss_dssp CCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEE
T ss_pred cCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEE
Confidence 9988 3333 55556678889999865543 33333355666777776 3333222 13344444566777777
Q ss_pred cCCceeeccCc-ccccCCCCCCEEEcccCcccccccchhhh-ccccceeeecc---------CcccccCccccc-CCCCC
Q 038407 216 LPENHFEGPIP-MEFCQLDSLQILNISDNNISGIYHHASIL-SLSKDQLVLAH---------NNFEGEVPIQLC-QLNKL 283 (528)
Q Consensus 216 L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~L~L~~---------n~l~~~~~~~l~-~l~~L 283 (528)
+++|.+++... ..+..+++|++|++++| +.......... ...+++|++.+ +.+++.....+. .+++|
T Consensus 296 L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L 374 (594)
T 2p1m_B 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL 374 (594)
T ss_dssp CTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTC
T ss_pred ccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhH
Confidence 77776553322 22456677777777766 32211111111 12235665522 333322222222 35666
Q ss_pred CEEEccCCcCCcCCCCCCcC-Cc-cccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccE
Q 038407 284 QLIDLSNNILSGHIPPCLDN-TT-LHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSE 361 (528)
Q Consensus 284 ~~L~ls~n~l~~~~p~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 361 (528)
+.|++..|.+++..+..+.. .+ +....+...... .......... ..........+++|++
T Consensus 375 ~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~-~~~~l~~~~~-----------------~~~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 375 ESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK-APDYLTLEPL-----------------DIGFGAIVEHCKDLRR 436 (594)
T ss_dssp CEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT-CCCTTTCCCT-----------------HHHHHHHHHHCTTCCE
T ss_pred HHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC-CcccccCCch-----------------hhHHHHHHhhCCCccE
Confidence 66666666554321111000 00 000000000000 0000000000 0000000112445666
Q ss_pred EECCCCcCccCCChhhhc-cccCCEEeCCCccccccCCccc-cCCCCCCeeeCcCCcCcccCcc-ccccCCCCCEEEccC
Q 038407 362 LDLSYNKLIGQIPPQIGN-LTRIQTLNLSYNNLTGSIPSTF-SNLKHIKSLDLSYNKLDGKIPL-QLVELNTLAVFNVAH 438 (528)
Q Consensus 362 L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ls~ 438 (528)
|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ .++++|++|+|++|++++.... ....+++|++|++++
T Consensus 437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence 66655 444333333333 5666666666666654433333 4566666666666666543332 233456666666666
Q ss_pred CCCc
Q 038407 439 NNLS 442 (528)
Q Consensus 439 N~l~ 442 (528)
|+++
T Consensus 516 ~~~~ 519 (594)
T 2p1m_B 516 CSVS 519 (594)
T ss_dssp SCCB
T ss_pred CCCC
Confidence 6663
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.3e-26 Score=218.27 Aligned_cols=226 Identities=22% Similarity=0.216 Sum_probs=164.0
Q ss_pred EEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccc
Q 038407 167 LQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNIS 246 (528)
Q Consensus 167 L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 246 (528)
.+..+..+..+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++.
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4444555555555432 45777777777776555556677777777777777777666666777777777777777665
Q ss_pred ccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccc
Q 038407 247 GIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDE 326 (528)
Q Consensus 247 ~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (528)
++ .+..+..+++|+.|++++|.+.+..+..+..
T Consensus 90 ~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------- 122 (276)
T 2z62_A 90 SL------------------------ALGAFSGLSSLQKLVAVETNLASLENFPIGH----------------------- 122 (276)
T ss_dssp EE------------------------CTTTTTTCTTCCEEECTTSCCCCSTTCCCTT-----------------------
T ss_pred cc------------------------ChhhhcCCccccEEECCCCCccccCchhccc-----------------------
Confidence 43 2335667777888888777776543333322
Q ss_pred ccccccccccccceeeeeccccccccccccCcccEEECCCCcCccC-CChhhhccccCCEEeCCCccccccCCccccCCC
Q 038407 327 GFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQ-IPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLK 405 (528)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 405 (528)
+++|++|++++|.+.+. +|..+..+++|+.|++++|++++..+..+..++
T Consensus 123 -----------------------------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 123 -----------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp -----------------------------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred -----------------------------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 34688888888888753 578888889999999999999877777777777
Q ss_pred CCC----eeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407 406 HIK----SLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 406 ~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l 471 (528)
+|+ +|++++|++++..+..+.. .+|++|++++|++++..+..+..+++|+.+++++||+.|+|+.
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred hccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 777 8899999998766655544 4799999999999877777777889999999999999999863
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=8.4e-29 Score=237.90 Aligned_cols=260 Identities=21% Similarity=0.216 Sum_probs=160.6
Q ss_pred CCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEc
Q 038407 41 KLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDL 120 (528)
Q Consensus 41 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (528)
.++..+++.+.+.......+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 3455667777776555555667789999999999999 4554444458999999999999986654 899999999999
Q ss_pred cCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCcc
Q 038407 121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGK 200 (528)
Q Consensus 121 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 200 (528)
++|.++ .++ ..++|++|++++|.+++..+. .+++|++|++++|.+..++
T Consensus 88 s~n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~---------------------- 136 (317)
T 3o53_A 88 NNNYVQ-ELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR---------------------- 136 (317)
T ss_dssp CSSEEE-EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGG----------------------
T ss_pred cCCccc-ccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCcc----------------------
Confidence 999998 544 236788888888877753322 2344555555555555443
Q ss_pred CCccccCCCCCCeeecCCceeeccCcccc-cCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccC
Q 038407 201 IPRWLGNLSMLQHIILPENHFEGPIPMEF-CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQ 279 (528)
Q Consensus 201 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~ 279 (528)
+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.++++.. ...
T Consensus 137 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~~~ 189 (317)
T 3o53_A 137 -DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--------------------------QVV 189 (317)
T ss_dssp -GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--------------------------CCC
T ss_pred -chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--------------------------ccc
Confidence 3344444455555555555544433333 245555555555555543311 112
Q ss_pred CCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcc
Q 038407 280 LNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYL 359 (528)
Q Consensus 280 l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 359 (528)
+++|+.|++++|.+++. |+.+.. +++|
T Consensus 190 l~~L~~L~Ls~N~l~~l-~~~~~~----------------------------------------------------l~~L 216 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFM-GPEFQS----------------------------------------------------AAGV 216 (317)
T ss_dssp CTTCCEEECCSSCCCEE-CGGGGG----------------------------------------------------GTTC
T ss_pred cccCCEEECCCCcCCcc-hhhhcc----------------------------------------------------cCcc
Confidence 45555555555555422 111111 2356
Q ss_pred cEEECCCCcCccCCChhhhccccCCEEeCCCcccc-ccCCccccCCCCCCeeeCcCC
Q 038407 360 SELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLT-GSIPSTFSNLKHIKSLDLSYN 415 (528)
Q Consensus 360 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N 415 (528)
++|++++|.++ .+|..+..+++|+.|++++|.+. +..+..+..+++|+.|+++++
T Consensus 217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 66666666665 34555666666666666666666 555666666667777766633
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=2.6e-26 Score=217.00 Aligned_cols=207 Identities=24% Similarity=0.259 Sum_probs=151.5
Q ss_pred CCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccce
Q 038407 182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQ 261 (528)
Q Consensus 182 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 261 (528)
..++++++++++++.++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.++++..
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------- 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----------- 72 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-----------
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-----------
Confidence 34455566666666555 3333332 456666666666666656666777777777777776654311
Q ss_pred eeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccccccccccccee
Q 038407 262 LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFK 341 (528)
Q Consensus 262 L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (528)
...+++|+.|++++|.+. .+|..+..
T Consensus 73 ---------------~~~l~~L~~L~Ls~N~l~-~l~~~~~~-------------------------------------- 98 (290)
T 1p9a_G 73 ---------------DGTLPVLGTLDLSHNQLQ-SLPLLGQT-------------------------------------- 98 (290)
T ss_dssp ---------------CSCCTTCCEEECCSSCCS-SCCCCTTT--------------------------------------
T ss_pred ---------------CCCCCcCCEEECCCCcCC-cCchhhcc--------------------------------------
Confidence 135667777777777776 44443322
Q ss_pred eeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccC
Q 038407 342 FTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI 421 (528)
Q Consensus 342 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 421 (528)
+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..
T Consensus 99 --------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 99 --------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp --------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred --------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 346888888888888766778888999999999999999877778888999999999999998766
Q ss_pred ccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407 422 PLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 422 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l 471 (528)
+..|..+++|++|++++|+++ .+|..+....+|+.+++.+|||.|+|.+
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 667788999999999999998 6677777788899999999999998854
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=7.3e-26 Score=212.20 Aligned_cols=114 Identities=25% Similarity=0.316 Sum_probs=93.0
Q ss_pred CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407 357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV 436 (528)
Q Consensus 357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 436 (528)
++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus 109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 36777777777777666667788888888888888888776677888888888888888888777777888888888888
Q ss_pred cCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407 437 AHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470 (528)
Q Consensus 437 s~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~ 470 (528)
++|++++..+..+..+++|+.+++++|||.|+|+
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 189 DNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 8888887766667778888888999999999886
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.7e-28 Score=245.95 Aligned_cols=245 Identities=21% Similarity=0.216 Sum_probs=149.6
Q ss_pred CCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCC
Q 038407 139 DLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPE 218 (528)
Q Consensus 139 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 218 (528)
+|++|++++|.+++..+..+..+++|++|++++|.+.+.++ +..+++|++|++++|.+++.. ..++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcC
Confidence 67777777777776555666677777777777777665544 666666777777766665321 225666666666
Q ss_pred ceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407 219 NHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298 (528)
Q Consensus 219 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 298 (528)
|.+++..+. .+++|+.|++++|.+++. .|..+..+++|+.|++++|.+++..|
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITML------------------------RDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSG------------------------GGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCC------------------------CchhhcCCCCCCEEECCCCCCCCcCh
Confidence 666644332 235566666666655544 34445556666666666666655433
Q ss_pred CCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhh
Q 038407 299 PCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIG 378 (528)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 378 (528)
..+.. .+++|+.|+|++|.+++..+ ..
T Consensus 162 ~~l~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~ 188 (487)
T 3oja_A 162 AELAA---------------------------------------------------SSDTLEHLNLQYNFIYDVKG--QV 188 (487)
T ss_dssp GGGGG---------------------------------------------------GTTTCCEEECTTSCCCEEEC--CC
T ss_pred HHHhh---------------------------------------------------hCCcccEEecCCCccccccc--cc
Confidence 32210 13356666666666664422 23
Q ss_pred ccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCc-cCCCCCCcccCCCCc
Q 038407 379 NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS-GKIPEWTAQFATFNE 457 (528)
Q Consensus 379 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~~~~l~~ 457 (528)
.+++|+.|+|++|.+++.+| .+..+++|+.|+|++|++++ +|..+..+++|+.|++++|++. +.+|.++..++.++.
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~ 266 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (487)
T ss_dssp CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHH
T ss_pred cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcE
Confidence 46677777777777775433 36667777777777777764 4556666777777777777766 444554555555555
Q ss_pred Cccc-------CCCCCCCCCC
Q 038407 458 SSYE-------GNPFLCGLPL 471 (528)
Q Consensus 458 l~l~-------~Np~~c~~~l 471 (528)
+.+. +||+.|.|+-
T Consensus 267 l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 267 VAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp HHHHHHHHHTSSSSCCCSSTT
T ss_pred EeccccccccCCCcccccCCc
Confidence 5554 7888887754
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=9.6e-28 Score=229.97 Aligned_cols=205 Identities=23% Similarity=0.240 Sum_probs=134.8
Q ss_pred CCCCCEEEccCCcCcccCCccC--CCCCCCCEEEccCCcCCccCcccCCC-----CCCCEEEccCCccCccCCccccCCC
Q 038407 137 CVDLEYLLLSNNSLEGHLFPRN--FNLTNLRRLQLDGNHFREILESLSKC-----SSLEGLYLSDNNLSGKIPRWLGNLS 209 (528)
Q Consensus 137 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~ 209 (528)
+++|++|++++|.+++..+..+ ..+++|++|++++|.+.+.+..+..+ ++|++|++++|.+.+..+..++.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 4555555555555554444443 45666666666666666554433333 6777777777777766667777777
Q ss_pred CCCeeecCCceeecc--Ccccc--cCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCE
Q 038407 210 MLQHIILPENHFEGP--IPMEF--CQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQL 285 (528)
Q Consensus 210 ~L~~L~L~~n~i~~~--~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~ 285 (528)
+|++|++++|++.+. .+..+ ..+++|++|++++|+++++... ....+..+++|+.
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------~~~~~~~l~~L~~ 232 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV---------------------CSALAAARVQLQG 232 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH---------------------HHHHHHTTCCCSE
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH---------------------HHHHHhcCCCCCE
Confidence 777777777776543 22233 6778888888888877643211 1123456778888
Q ss_pred EEccCCcCCcCCCC-CCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEEC
Q 038407 286 IDLSNNILSGHIPP-CLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDL 364 (528)
Q Consensus 286 L~ls~n~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 364 (528)
|++++|.+++..|. .+.. +++|++|++
T Consensus 233 L~Ls~N~l~~~~~~~~~~~----------------------------------------------------l~~L~~L~L 260 (312)
T 1wwl_A 233 LDLSHNSLRDAAGAPSCDW----------------------------------------------------PSQLNSLNL 260 (312)
T ss_dssp EECTTSCCCSSCCCSCCCC----------------------------------------------------CTTCCEEEC
T ss_pred EECCCCcCCcccchhhhhh----------------------------------------------------cCCCCEEEC
Confidence 88888887765432 1111 346888888
Q ss_pred CCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcc
Q 038407 365 SYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDG 419 (528)
Q Consensus 365 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 419 (528)
++|.++ .+|..+. ++|+.|+|++|++++. |. +..+++|++|+|++|++++
T Consensus 261 s~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 261 SFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 888887 5666555 7888888888888865 55 8888888888888888874
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.8e-28 Score=233.67 Aligned_cols=248 Identities=22% Similarity=0.227 Sum_probs=166.2
Q ss_pred CCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccC-ccCCcccc-------CCCCCCeeecCCceeeccCcccc--c
Q 038407 161 LTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLS-GKIPRWLG-------NLSMLQHIILPENHFEGPIPMEF--C 230 (528)
Q Consensus 161 l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~i~~~~~~~l--~ 230 (528)
.++|++|++++|.+ .+|..+... |+.|++++|.+. ..++..+. .+++|++|++++|++++..|..+ .
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 34455555555555 444332222 555566655552 23333333 45666666666666665555554 5
Q ss_pred CCCCCCEEEcccCcccccccchhhhc-----cccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCC--CCCCcC
Q 038407 231 QLDSLQILNISDNNISGIYHHASILS-----LSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHI--PPCLDN 303 (528)
Q Consensus 231 ~l~~L~~L~L~~n~l~~~~~~~~~~~-----~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~--p~~~~~ 303 (528)
.+++|++|++++|++++. +..+... ..+++|++++|++.+..+..+..+++|++|++++|++.+.. |..+.
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~- 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC- 196 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC-
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH-
Confidence 666666666666666665 3222222 33466677777777677778889999999999999876431 11110
Q ss_pred CccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccC---CChhhhcc
Q 038407 304 TTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQ---IPPQIGNL 380 (528)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l 380 (528)
...+++|++|++++|.+++. ....+..+
T Consensus 197 -------------------------------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 197 -------------------------------------------------PLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp -------------------------------------------------TTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred -------------------------------------------------hccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 01145799999999998732 22345677
Q ss_pred ccCCEEeCCCccccccCC-ccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCc
Q 038407 381 TRIQTLNLSYNNLTGSIP-STFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESS 459 (528)
Q Consensus 381 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~ 459 (528)
++|+.|++++|++++..| ..+..+++|++|+|++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.++
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS 302 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence 899999999999997764 55677899999999999998 6676665 7899999999999876 66 77889999999
Q ss_pred ccCCCCCC
Q 038407 460 YEGNPFLC 467 (528)
Q Consensus 460 l~~Np~~c 467 (528)
+++|++..
T Consensus 303 L~~N~l~~ 310 (312)
T 1wwl_A 303 LKGNPFLD 310 (312)
T ss_dssp CTTCTTTC
T ss_pred ccCCCCCC
Confidence 99998753
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-26 Score=234.89 Aligned_cols=218 Identities=23% Similarity=0.209 Sum_probs=157.3
Q ss_pred CCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeec
Q 038407 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLA 265 (528)
Q Consensus 186 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~ 265 (528)
+|++|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.++++.+. ..+++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-----TTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-----CCcCEEECc
Confidence 45555555555554444455555555555555555544333 44555555555555555444322 233555555
Q ss_pred cCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeec
Q 038407 266 HNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTK 345 (528)
Q Consensus 266 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (528)
+|.+++..+. .+++|+.|++++|.+++..|..+..
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------------ 142 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC------------------------------------------ 142 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG------------------------------------------
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC------------------------------------------
Confidence 5555544333 3578999999999998765554433
Q ss_pred cccccccccccCcccEEECCCCcCccCCChhhh-ccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccc
Q 038407 346 NIAYTYRGRVISYLSELDLSYNKLIGQIPPQIG-NLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQ 424 (528)
Q Consensus 346 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 424 (528)
+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++..+ +..+++|+.|+|++|++++..| .
T Consensus 143 ----------l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~ 209 (487)
T 3oja_A 143 ----------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-E 209 (487)
T ss_dssp ----------GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-G
T ss_pred ----------CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-h
Confidence 45899999999999988888876 79999999999999997633 4469999999999999997555 5
Q ss_pred cccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCC
Q 038407 425 LVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGL 469 (528)
Q Consensus 425 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~ 469 (528)
+..+++|+.|++++|++++ +|..+..+++|+.+++++|++.|++
T Consensus 210 ~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 8999999999999999996 6777888999999999999999875
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.8e-24 Score=203.56 Aligned_cols=225 Identities=21% Similarity=0.242 Sum_probs=155.5
Q ss_pred EEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccC
Q 038407 68 LLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSN 147 (528)
Q Consensus 68 ~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 147 (528)
.++.++..+. .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|++++
T Consensus 11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence 3444555555 555543 236777777777776666566677777777777777766 55544445667777777777
Q ss_pred CcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCcc-CCccccCCCCCCeeecCCceeeccC
Q 038407 148 NSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGK-IPRWLGNLSMLQHIILPENHFEGPI 225 (528)
Q Consensus 148 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~~ 225 (528)
|.+++..+..+.++++|++|++++|.+..+++ .+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 77766555666777777777777777776655 567777777777777777653 4677777777777777777777666
Q ss_pred cccccCCCCCC----EEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407 226 PMEFCQLDSLQ----ILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298 (528)
Q Consensus 226 ~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 298 (528)
+..+..+++|+ .|++++|++.++.+..+. ...+++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 66666555555 778888877766554332 2355778888888887777778999999999999999986544
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=9.2e-28 Score=251.78 Aligned_cols=398 Identities=15% Similarity=0.104 Sum_probs=239.2
Q ss_pred hhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCC-CCccc-cCcCccCCCCCCEEEccCCcCccccChhh---
Q 038407 10 FFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNN-SLPGL-FLLPIHCHKSLMLLDVSNNNLQGHIPVKI--- 84 (528)
Q Consensus 10 ~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~--- 84 (528)
....+++|++|+|++|.+++..+..+...+++|++|+|++| .++.. ++..+..+++|++|++++|.+++..+..+
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 34678999999999999887666665557999999999999 45442 33444578999999999998774433322
Q ss_pred hhcCCCCceeeccCCc--Ccc-cCCccccCCCCCCEEEccCC-cccccCChhhhhCCCCCCEEEccCCc-------Cccc
Q 038407 85 GDFLPSLKYFNISMNA--FDS-SIPTSFGNMNFLISLDLSNN-QLTGEIPEHLAMGCVDLEYLLLSNNS-------LEGH 153 (528)
Q Consensus 85 ~~~l~~L~~L~L~~n~--i~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~ 153 (528)
...+++|++|++++|. +.. ..+..+.++++|++|++++| .+. .++..+ ..+++|++|+++.+. +.+
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~- 256 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLL-QRAPQLEELGTGGYTAEVRPDVYSG- 256 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHH-HHCTTCSEEECSBCCCCCCHHHHHH-
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHH-hcCCcceEcccccccCccchhhHHH-
Confidence 2236799999999986 221 11122345799999999998 444 454444 478899999976553 222
Q ss_pred CCccCCCCCCCCEE-EccCCcCCccCcccCCCCCCCEEEccCCccCccC-CccccCCCCCCeeecCCceeecc-Cccccc
Q 038407 154 LFPRNFNLTNLRRL-QLDGNHFREILESLSKCSSLEGLYLSDNNLSGKI-PRWLGNLSMLQHIILPENHFEGP-IPMEFC 230 (528)
Q Consensus 154 ~~~~~~~l~~L~~L-~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~-~~~~l~ 230 (528)
.+..+.++++|+.| .+.+.....++..+..+++|++|++++|.+.+.. ...+..+++|++|++++| +.+. .+....
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence 22345566777776 3443333333333345667777777777654322 122446677777777766 3322 122223
Q ss_pred CCCCCCEEEccc---------Ccccccccchhhh-ccccceeeeccCcccccCccccc-CCCCCCEEEcc--C----CcC
Q 038407 231 QLDSLQILNISD---------NNISGIYHHASIL-SLSKDQLVLAHNNFEGEVPIQLC-QLNKLQLIDLS--N----NIL 293 (528)
Q Consensus 231 ~l~~L~~L~L~~---------n~l~~~~~~~~~~-~~~~~~L~L~~n~l~~~~~~~l~-~l~~L~~L~ls--~----n~l 293 (528)
.+++|++|++.+ +.+++........ ...+++|.+..|.+++.....+. .+++|+.|+++ + +.+
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence 466777777633 3333222111122 22336666666666654444443 46777777777 2 223
Q ss_pred CcCCCC--C----CcCCccccccccCCCCCCCCccccccccccccccccccceeeee--ccccccccccccCcccEEECC
Q 038407 294 SGHIPP--C----LDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTT--KNIAYTYRGRVISYLSELDLS 365 (528)
Q Consensus 294 ~~~~p~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~Ls 365 (528)
++ .|. . +...+ ....+.+.. .+.........+++|+.|+++
T Consensus 416 ~~-~~~~~~~~~l~~~~~------------------------------~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~ 464 (594)
T 2p1m_B 416 TL-EPLDIGFGAIVEHCK------------------------------DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVA 464 (594)
T ss_dssp TC-CCTHHHHHHHHHHCT------------------------------TCCEEECCSSCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cC-CchhhHHHHHHhhCC------------------------------CccEEeecCcccHHHHHHHHHhchhccEeecc
Confidence 21 110 0 00000 000000000 000000111125689999999
Q ss_pred CCcCccCCChhh-hccccCCEEeCCCccccccCCc-cccCCCCCCeeeCcCCcCcccCcccc-ccCCCCCEEEccCCCCc
Q 038407 366 YNKLIGQIPPQI-GNLTRIQTLNLSYNNLTGSIPS-TFSNLKHIKSLDLSYNKLDGKIPLQL-VELNTLAVFNVAHNNLS 442 (528)
Q Consensus 366 ~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~ls~N~l~ 442 (528)
+|.+++..+..+ ..+++|+.|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.-.
T Consensus 465 ~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 999876555454 6789999999999999754433 44568999999999999965444444 56788877777766543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.1e-23 Score=197.21 Aligned_cols=203 Identities=24% Similarity=0.229 Sum_probs=114.1
Q ss_pred CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceee
Q 038407 16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95 (528)
Q Consensus 16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~ 95 (528)
+.+++++++++++ .+|..+ .+++++|++++|.+++..+..+.++++|++|++++|.++ .++..++..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 3556666666655 455432 245556666666555544445555555555555555555 44444433345555555
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCC
Q 038407 96 ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR 175 (528)
Q Consensus 96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 175 (528)
+++|+++...+..|..+++|+ +|++++|.++...+..+..+++|++|++++|.+.
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~-------------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLA-------------------------ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCC-------------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCcCCHhHcccccCCC-------------------------EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 555555444444444444444 4444444444433344445555555555555555
Q ss_pred ccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccccc
Q 038407 176 EILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGI 248 (528)
Q Consensus 176 ~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 248 (528)
.+++ .+..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus 147 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 5544 355566666666666666655555566666677777777766655555566677777777777776543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1e-23 Score=199.25 Aligned_cols=204 Identities=22% Similarity=0.189 Sum_probs=157.0
Q ss_pred CCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCE
Q 038407 158 NFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQI 237 (528)
Q Consensus 158 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 237 (528)
+.+++++++++++++.++.+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+ ...+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 4466777888888888877776553 578888888888877777778888888888888888875433 267888888
Q ss_pred EEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCC
Q 038407 238 LNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPE 317 (528)
Q Consensus 238 L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~ 317 (528)
|++++|++..+ |..+..+++|+.|++++|++++..+..+..
T Consensus 82 L~Ls~N~l~~l-------------------------~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQSL-------------------------PLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------- 122 (290)
T ss_dssp EECCSSCCSSC-------------------------CCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------
T ss_pred EECCCCcCCcC-------------------------chhhccCCCCCEEECCCCcCcccCHHHHcC--------------
Confidence 88888877633 334667788888888888887554444443
Q ss_pred CCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccC
Q 038407 318 SSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSI 397 (528)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 397 (528)
+++|++|++++|++++..+..|..+++|+.|+|++|++++..
T Consensus 123 --------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 123 --------------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp --------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred --------------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 347888888888888777777888888899999999888777
Q ss_pred CccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCcc
Q 038407 398 PSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSG 443 (528)
Q Consensus 398 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 443 (528)
+..|..+++|+.|+|++|+++ .+|..+...++|+.+++++|++..
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 777788888999999999888 567777777888999999888864
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=8.5e-24 Score=198.27 Aligned_cols=202 Identities=24% Similarity=0.303 Sum_probs=115.6
Q ss_pred hcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCC
Q 038407 37 ENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLI 116 (528)
Q Consensus 37 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 116 (528)
..+++|++|++++|.++.. ..+..+++|++|++++|.++ .++ .+.. +++|++|++++|.+++..+..|.++++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~-~l~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS-ALKE-LTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG-GGTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch-hhcC-CCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3455666666666655432 23555566666666666655 232 2322 55666666666666655555556666666
Q ss_pred EEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCC
Q 038407 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDN 195 (528)
Q Consensus 117 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n 195 (528)
+|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+..+++ .+..+++|++|++++|
T Consensus 113 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 6666666665 4444444455666666666666665444445566666666666666665554 3455666666666666
Q ss_pred ccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccc
Q 038407 196 NLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHH 251 (528)
Q Consensus 196 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 251 (528)
.+.+..+..+..+++|++|++++|.+.+ .+++|+.+++..|.+.+..+.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC
Confidence 6665555555666666666666665542 244566666666666555443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.7e-23 Score=193.94 Aligned_cols=183 Identities=20% Similarity=0.270 Sum_probs=106.6
Q ss_pred CCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccce
Q 038407 182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQ 261 (528)
Q Consensus 182 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 261 (528)
..+++|+.|++++|.+.. . ..+..+++|++|++++|.+++. ..+..+++|++|++++|.++++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~------------- 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSL------------- 100 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCC-------------
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcc-------------
Confidence 345566666666665542 1 2355566666666666665532 2455556666666555555432
Q ss_pred eeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCcccccccccccccccccccee
Q 038407 262 LVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFK 341 (528)
Q Consensus 262 L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (528)
.+..+..+++|++|++++|.+++..+..+..
T Consensus 101 -----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------------------------- 131 (272)
T 3rfs_A 101 -----------PNGVFDKLTNLKELVLVENQLQSLPDGVFDK-------------------------------------- 131 (272)
T ss_dssp -----------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------------------------------------
T ss_pred -----------ChhHhcCCcCCCEEECCCCcCCccCHHHhcc--------------------------------------
Confidence 2234556666666666666666443333332
Q ss_pred eeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccC
Q 038407 342 FTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKI 421 (528)
Q Consensus 342 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 421 (528)
+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..|+.+++|++|++++|++++..
T Consensus 132 --------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 132 --------------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred --------------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 235666666666666555555566666666666666666555555666666666666666666655
Q ss_pred ccccccCCCCCEEEccCCCCccC
Q 038407 422 PLQLVELNTLAVFNVAHNNLSGK 444 (528)
Q Consensus 422 ~~~~~~l~~L~~L~ls~N~l~~~ 444 (528)
+..+..+++|++|++++|++.+.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCC
T ss_pred HHHHhCCcCCCEEEccCCCcccc
Confidence 55566666666666666666543
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=8e-23 Score=189.27 Aligned_cols=180 Identities=19% Similarity=0.261 Sum_probs=129.8
Q ss_pred CCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEcc
Q 038407 210 MLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLS 289 (528)
Q Consensus 210 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls 289 (528)
..++++++++.++ .+|..+. ++++.|++++|.+.+ ..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~------------------------~~~~~~~~l~~L~~L~L~ 67 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLAT------------------------LSDATFRGLTKLTWLNLD 67 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCC------------------------CCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCc------------------------cCHhHhcCcccCCEEECC
Confidence 3456666666666 3444332 456666666666554 444557777888888888
Q ss_pred CCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcC
Q 038407 290 NNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKL 369 (528)
Q Consensus 290 ~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 369 (528)
+|.+++..+..+.. +++|++|++++|.+
T Consensus 68 ~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L~L~~n~l 95 (251)
T 3m19_A 68 YNQLQTLSAGVFDD----------------------------------------------------LTELGTLGLANNQL 95 (251)
T ss_dssp TSCCCCCCTTTTTT----------------------------------------------------CTTCCEEECTTSCC
T ss_pred CCcCCccCHhHhcc----------------------------------------------------CCcCCEEECCCCcc
Confidence 88777655544433 33688888888888
Q ss_pred ccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCC
Q 038407 370 IGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWT 449 (528)
Q Consensus 370 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~ 449 (528)
++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 76666777788888888888888887666677788888888888888886666677788888888888888887777677
Q ss_pred cccCCCCcCcccCCCCCCC
Q 038407 450 AQFATFNESSYEGNPFLCG 468 (528)
Q Consensus 450 ~~~~~l~~l~l~~Np~~c~ 468 (528)
..+++|+.+++++|||.|+
T Consensus 176 ~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 176 DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSCCBCTT
T ss_pred hCCCCCCEEEeeCCceeCC
Confidence 7778888888888888887
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.7e-23 Score=191.04 Aligned_cols=197 Identities=18% Similarity=0.189 Sum_probs=122.7
Q ss_pred CCCEEEccCCccCccCCccccCCCCCCeeecCCce-eeccCcccccCCCCCCEEEccc-Ccccccccchhhhccccceee
Q 038407 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH-FEGPIPMEFCQLDSLQILNISD-NNISGIYHHASILSLSKDQLV 263 (528)
Q Consensus 186 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~L~ 263 (528)
++++|++++|.+++..+..|..+++|++|++++|+ ++...+..|.++++|++|++++ |+++++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i--------------- 96 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI--------------- 96 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE---------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc---------------
Confidence 56666666666665555556666666666666665 5555555666666666666665 555433
Q ss_pred eccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeee
Q 038407 264 LAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFT 343 (528)
Q Consensus 264 L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (528)
.+..|..+++|+.|++++|.+++ +|. +..
T Consensus 97 ---------~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~---------------------------------------- 125 (239)
T 2xwt_C 97 ---------DPDALKELPLLKFLGIFNTGLKM-FPD-LTK---------------------------------------- 125 (239)
T ss_dssp ---------CTTSEECCTTCCEEEEEEECCCS-CCC-CTT----------------------------------------
T ss_pred ---------CHHHhCCCCCCCEEeCCCCCCcc-ccc-ccc----------------------------------------
Confidence 22345566667777777766653 333 222
Q ss_pred eccccccccccccCccc---EEECCCC-cCccCCChhhhccccCC-EEeCCCccccccCCccccCCCCCCeeeCcCCc-C
Q 038407 344 TKNIAYTYRGRVISYLS---ELDLSYN-KLIGQIPPQIGNLTRIQ-TLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNK-L 417 (528)
Q Consensus 344 ~~~~~~~~~~~~~~~L~---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l 417 (528)
+++|+ +|++++| .+++..+..|..+++|+ .|++++|+++...+..|.. ++|++|++++|+ +
T Consensus 126 ------------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 126 ------------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYL 192 (239)
T ss_dssp ------------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTC
T ss_pred ------------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCc
Confidence 12343 7777777 67655556677777777 7777777777444444554 677777777774 7
Q ss_pred cccCccccccC-CCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCC
Q 038407 418 DGKIPLQLVEL-NTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNP 464 (528)
Q Consensus 418 ~~~~~~~~~~l-~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np 464 (528)
+++.+..|..+ ++|++|++++|++++..+. .++.++.+.+.+++
T Consensus 193 ~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 193 TVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred ccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 76666667777 7777777777777743333 45666666666654
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.3e-24 Score=213.07 Aligned_cols=243 Identities=17% Similarity=0.163 Sum_probs=155.7
Q ss_pred cCchhhhCCCCCCEEEccCCcCcccCChhh---hhcCCCCCEEEccCCCC---ccccCcCc-------cCCCCCCEEEcc
Q 038407 6 HSPNFFYHQHDLEFVRLSHLNLNGEFPNWL---LENNTKLESNFLLNNSL---PGLFLLPI-------HCHKSLMLLDVS 72 (528)
Q Consensus 6 ~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~---~~~l~~L~~L~L~~n~~---~~~~~~~~-------~~~~~L~~L~ls 72 (528)
.++.++..+++|++|+|++|.+++..+..+ +..+++|++|+|++|.+ ++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 466777777888888888887765433221 45677888888877533 33334333 567788888888
Q ss_pred CCcCcc----ccChhhhhcCCCCceeeccCCcCcccCCcccc----CC---------CCCCEEEccCCccc-ccCCh--h
Q 038407 73 NNNLQG----HIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG----NM---------NFLISLDLSNNQLT-GEIPE--H 132 (528)
Q Consensus 73 ~n~l~~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~l~~n~l~-~~~~~--~ 132 (528)
+|.+++ .++..+.. +++|++|++++|.++...+..+. .+ ++|++|++++|+++ ..++. .
T Consensus 103 ~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 887774 24444444 67788888888877643333332 33 77788888777775 23331 2
Q ss_pred hhhCCCCCCEEEccCCcCcc-----cCCccCCCCCCCCEEEccCCcCC-----ccCcccCCCCCCCEEEccCCccCcc--
Q 038407 133 LAMGCVDLEYLLLSNNSLEG-----HLFPRNFNLTNLRRLQLDGNHFR-----EILESLSKCSSLEGLYLSDNNLSGK-- 200 (528)
Q Consensus 133 ~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~-- 200 (528)
.+..+++|++|++++|+++. ..+..+..+++|++|++++|.++ .++..+..+++|++|++++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 23356777778887777762 12225667777777777777773 3444666777777777777777644
Q ss_pred --CCcccc--CCCCCCeeecCCceeec----cCcccc-cCCCCCCEEEcccCcccccc
Q 038407 201 --IPRWLG--NLSMLQHIILPENHFEG----PIPMEF-CQLDSLQILNISDNNISGIY 249 (528)
Q Consensus 201 --~~~~l~--~l~~L~~L~L~~n~i~~----~~~~~l-~~l~~L~~L~L~~n~l~~~~ 249 (528)
++..+. .+++|++|++++|.+++ .++..+ ..+++|++|++++|++++..
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 344453 36777777777777775 355555 45677777777777776554
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=7.2e-23 Score=188.19 Aligned_cols=206 Identities=17% Similarity=0.182 Sum_probs=162.7
Q ss_pred cCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCc-CccccChhhhhcCCCCceeeccC-CcCcc
Q 038407 26 NLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN-LQGHIPVKIGDFLPSLKYFNISM-NAFDS 103 (528)
Q Consensus 26 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~-n~i~~ 103 (528)
+++ .+|. + .++|++|++++|++++..+..+.++++|++|++++|+ ++ .++...+..+++|++|++++ |.++.
T Consensus 22 ~l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 22 DIQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp SCS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCE
T ss_pred Ccc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 343 6776 2 3478899999999888777788888999999999987 76 66665555588999999988 88887
Q ss_pred cCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC---EEEccCC-cCcccCCccCCCCCCCC-EEEccCCcCCccC
Q 038407 104 SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE---YLLLSNN-SLEGHLFPRNFNLTNLR-RLQLDGNHFREIL 178 (528)
Q Consensus 104 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~ 178 (528)
..+..|.++++|++|++++|+++ .+|. +..+++|+ +|++++| .++...+..+.++++|+ +|++++|.+..++
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred cCHHHhCCCCCCCEEeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence 77788888999999999999888 5776 45778887 8999988 88876666688888898 9999999888877
Q ss_pred cccCCCCCCCEEEccCCc-cCccCCccccCC-CCCCeeecCCceeeccCcccccCCCCCCEEEcccC
Q 038407 179 ESLSKCSSLEGLYLSDNN-LSGKIPRWLGNL-SMLQHIILPENHFEGPIPMEFCQLDSLQILNISDN 243 (528)
Q Consensus 179 ~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n 243 (528)
......++|++|++++|+ ++...+..|..+ ++|++|++++|++++. |.. .+++|+.|+++++
T Consensus 173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 643333788899999884 876667778888 8899999998888844 333 5678888888765
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=197.91 Aligned_cols=226 Identities=19% Similarity=0.166 Sum_probs=138.4
Q ss_pred CCCCEEEccCCcCcccCChhh--hhcCCCCCEEEccCCCCccccCcCc--cCCCCCCEEEccCCcCccccC----hhhhh
Q 038407 15 HDLEFVRLSHLNLNGEFPNWL--LENNTKLESNFLLNNSLPGLFLLPI--HCHKSLMLLDVSNNNLQGHIP----VKIGD 86 (528)
Q Consensus 15 ~~L~~L~Ls~~~~~~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~----~~~~~ 86 (528)
..++.+.+.++.++...-..+ +..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 346667776666542111111 1234567777777777777766666 677777777777777764333 1222
Q ss_pred cCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCccccc--CC-hhhhhCCCCCCEEEccCCcCcccCCc----cCC
Q 038407 87 FLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGE--IP-EHLAMGCVDLEYLLLSNNSLEGHLFP----RNF 159 (528)
Q Consensus 87 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~ 159 (528)
.+++|++|++++|++.+..+..|.++++|++|++++|++.+. ++ ...+..+++|++|++++|+++. .+. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 366777777777777766667777777777777777776421 11 1112356677777777777653 111 134
Q ss_pred CCCCCCEEEccCCcCCcc-CcccCCC---CCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCC
Q 038407 160 NLTNLRRLQLDGNHFREI-LESLSKC---SSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSL 235 (528)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~-~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 235 (528)
.+++|++|++++|++... |+.+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 567777777777777766 3344443 57777777777776 4455443 5677777777777643 22 4566777
Q ss_pred CEEEcccCcccc
Q 038407 236 QILNISDNNISG 247 (528)
Q Consensus 236 ~~L~L~~n~l~~ 247 (528)
+.|++++|++++
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 777777776653
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=4e-24 Score=209.23 Aligned_cols=247 Identities=19% Similarity=0.144 Sum_probs=157.8
Q ss_pred CccccCchhhhCCCCCCEEEccCCcCcccCCh---hhhhcCC-CCCEEEccCCCCccccCcCccCC-----CCCCEEEcc
Q 038407 2 DVVAHSPNFFYHQHDLEFVRLSHLNLNGEFPN---WLLENNT-KLESNFLLNNSLPGLFLLPIHCH-----KSLMLLDVS 72 (528)
Q Consensus 2 ~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~---~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~-----~~L~~L~ls 72 (528)
+++|.+|..+...++|++|+|++|.+++..+. ..|.+++ +|++|+|++|.+++..+..+..+ ++|++|+++
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence 35667777777777788888888887643331 3356777 78888888888877655555443 788888888
Q ss_pred CCcCccccChhhhhc---C-CCCceeeccCCcCcccCCcccc----C-CCCCCEEEccCCcccccCChhh---hhCCC-C
Q 038407 73 NNNLQGHIPVKIGDF---L-PSLKYFNISMNAFDSSIPTSFG----N-MNFLISLDLSNNQLTGEIPEHL---AMGCV-D 139 (528)
Q Consensus 73 ~n~l~~~~~~~~~~~---l-~~L~~L~L~~n~i~~~~~~~~~----~-l~~L~~L~l~~n~l~~~~~~~~---~~~l~-~ 139 (528)
+|.+++..+..+... + ++|++|++++|.+++..+..+. . .++|++|++++|.+++.....+ +...+ +
T Consensus 89 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 89 GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 888775444433331 2 6788888888887765544432 3 2578888888887764332222 12333 7
Q ss_pred CCEEEccCCcCcccCCccC----CCC-CCCCEEEccCCcCCc-----cCcccCC-CCCCCEEEccCCccCccCC----cc
Q 038407 140 LEYLLLSNNSLEGHLFPRN----FNL-TNLRRLQLDGNHFRE-----ILESLSK-CSSLEGLYLSDNNLSGKIP----RW 204 (528)
Q Consensus 140 L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~~~~-----~~~~~~~-l~~L~~L~L~~n~l~~~~~----~~ 204 (528)
|++|++++|.+++..+..+ ... ++|++|++++|.+.. ++..+.. .++|++|++++|.+.+..+ ..
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHH
Confidence 8888888887775443322 234 478888888887776 3333433 3477888888887765433 23
Q ss_pred ccCCCCCCeeecCCceeecc-------CcccccCCCCCCEEEcccCccccc
Q 038407 205 LGNLSMLQHIILPENHFEGP-------IPMEFCQLDSLQILNISDNNISGI 248 (528)
Q Consensus 205 l~~l~~L~~L~L~~n~i~~~-------~~~~l~~l~~L~~L~L~~n~l~~~ 248 (528)
+..+++|++|++++|.+.+. ++..+..+++|+.|++++|++...
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 45567778888877774322 223456667777777777777654
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=9.6e-24 Score=206.56 Aligned_cols=260 Identities=17% Similarity=0.134 Sum_probs=192.0
Q ss_pred EEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccC----cCccCCC-CCCEEEccCCcCccccChhhhhc----CC
Q 038407 19 FVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFL----LPIHCHK-SLMLLDVSNNNLQGHIPVKIGDF----LP 89 (528)
Q Consensus 19 ~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~~-~L~~L~ls~n~l~~~~~~~~~~~----l~ 89 (528)
++++++|++++.+|.. +...++|++|+|++|.+++..+ ..+..++ +|++|++++|.+++..+..+... .+
T Consensus 2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 5789999999777764 4556669999999999988766 6778888 89999999999986555555542 28
Q ss_pred CCceeeccCCcCcccCCcc----ccCC-CCCCEEEccCCcccccCChhhh---hC-CCCCCEEEccCCcCcccCCcc---
Q 038407 90 SLKYFNISMNAFDSSIPTS----FGNM-NFLISLDLSNNQLTGEIPEHLA---MG-CVDLEYLLLSNNSLEGHLFPR--- 157 (528)
Q Consensus 90 ~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~~~---~~-l~~L~~L~l~~n~l~~~~~~~--- 157 (528)
+|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. .. .++|++|++++|.+++.....
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999999998766654 4444 8999999999999843333322 22 368999999999988533322
Q ss_pred -CCCCC-CCCEEEccCCcCCccCc-----ccCCC-CCCCEEEccCCccCcc----CCccccC-CCCCCeeecCCceeecc
Q 038407 158 -NFNLT-NLRRLQLDGNHFREILE-----SLSKC-SSLEGLYLSDNNLSGK----IPRWLGN-LSMLQHIILPENHFEGP 224 (528)
Q Consensus 158 -~~~l~-~L~~L~l~~n~~~~~~~-----~~~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~i~~~ 224 (528)
+...+ +|++|++++|.+..... .+..+ ++|++|++++|.+.+. ++..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 33444 89999999999876654 34455 4899999999988753 3444544 45899999999998865
Q ss_pred Cc----ccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcC
Q 038407 225 IP----MEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGH 296 (528)
Q Consensus 225 ~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 296 (528)
.+ ..+..+++|+.|++++|.+.++.+... ..++..+..+++|+.||+++|.+.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~-----------------~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC-----------------KALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH-----------------HHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHH-----------------HHHHHHhccCCceEEEecCCCcCCCc
Confidence 44 345677889999999998665543311 12334677888999999999988754
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=3.7e-22 Score=190.44 Aligned_cols=195 Identities=19% Similarity=0.309 Sum_probs=136.4
Q ss_pred hcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCC
Q 038407 37 ENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLI 116 (528)
Q Consensus 37 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 116 (528)
..+++|++|++++|.++.. + .+..+++|++|++++|.+. .++. +. .+++|++|++++|.+++. ..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 4566777777777766643 2 4666777777777777776 4444 33 367777777777777643 3567777777
Q ss_pred EEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCc
Q 038407 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNN 196 (528)
Q Consensus 117 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~ 196 (528)
+|++++|.++ .++. +..+++|++|++++|.+++.. .+..+++|++|++++|.+..+++ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 7777777776 4543 346777777777777777532 26677778888888887777655 7777888888888887
Q ss_pred cCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccccc
Q 038407 197 LSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGI 248 (528)
Q Consensus 197 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 248 (528)
+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++.
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 774432 677788888888888887554 367788888888888887664
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.3e-24 Score=213.10 Aligned_cols=247 Identities=20% Similarity=0.201 Sum_probs=179.0
Q ss_pred cCChhhhhcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCc---CccccChhhh------hcCCCCceeec
Q 038407 30 EFPNWLLENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNN---LQGHIPVKIG------DFLPSLKYFNI 96 (528)
Q Consensus 30 ~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~~------~~l~~L~~L~L 96 (528)
.++.. +..+++|++|+|++|.++.. ++..+..+++|++|++++|. +++.+|..+. ..+++|++|++
T Consensus 23 ~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 45555 57899999999999999875 34457889999999999964 4445555542 34789999999
Q ss_pred cCCcCcc----cCCccccCCCCCCEEEccCCcccccCChhhhh---CC---------CCCCEEEccCCcCccc-CC---c
Q 038407 97 SMNAFDS----SIPTSFGNMNFLISLDLSNNQLTGEIPEHLAM---GC---------VDLEYLLLSNNSLEGH-LF---P 156 (528)
Q Consensus 97 ~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~l---------~~L~~L~l~~n~l~~~-~~---~ 156 (528)
++|.+.. .++..+..+++|++|++++|.+++..+..+.. .+ ++|++|++++|+++.. .+ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9999986 46677888999999999999886333322221 22 7899999999988732 22 2
Q ss_pred cCCCCCCCCEEEccCCcCCc-----cCc-ccCCCCCCCEEEccCCccC----ccCCccccCCCCCCeeecCCceeecc--
Q 038407 157 RNFNLTNLRRLQLDGNHFRE-----ILE-SLSKCSSLEGLYLSDNNLS----GKIPRWLGNLSMLQHIILPENHFEGP-- 224 (528)
Q Consensus 157 ~~~~l~~L~~L~l~~n~~~~-----~~~-~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~i~~~-- 224 (528)
.+..+++|++|++++|.+.. +.+ .+..+++|+.|++++|.++ ..++..+..+++|++|++++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 45577888899999888872 223 6777888888888888885 45667778888888888888888755
Q ss_pred --Cccccc--CCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccc-cCCCCCCEEEccCCcCCcCC
Q 038407 225 --IPMEFC--QLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQL-CQLNKLQLIDLSNNILSGHI 297 (528)
Q Consensus 225 --~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l-~~l~~L~~L~ls~n~l~~~~ 297 (528)
++..+. .+++|++|++++|.+++.... .++..+ .++++|+.|++++|++++..
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~--------------------~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVR--------------------TLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHH--------------------HHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHH--------------------HHHHHHHhcCCCceEEEccCCcCCcch
Confidence 445553 378888888888887652100 133334 45788888888888877543
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=4.6e-22 Score=189.81 Aligned_cols=195 Identities=22% Similarity=0.269 Sum_probs=151.3
Q ss_pred hhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCC
Q 038407 11 FYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPS 90 (528)
Q Consensus 11 l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~ 90 (528)
+..+++|++|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++ .+.. +++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~-l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAG-LQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTT-CTT
T ss_pred HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcC-CCC
Confidence 356778888888888886 5663 5788888888888888876554 788888888888888887 454 3443 788
Q ss_pred CceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEcc
Q 038407 91 LKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD 170 (528)
Q Consensus 91 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 170 (528)
|++|++++|++++.. .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++. +. +..+++|++|+++
T Consensus 109 L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKAD 181 (308)
T ss_dssp CCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECC
T ss_pred CCEEECCCCCCCCch--hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECC
Confidence 888888888887542 3788888888888888887 5554 45688888888888888863 22 7788888888888
Q ss_pred CCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeec
Q 038407 171 GNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG 223 (528)
Q Consensus 171 ~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 223 (528)
+|.+..+++ +..+++|++|++++|.+.+.. .+..+++|+.|++++|.+++
T Consensus 182 ~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 182 DNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 888887765 677888888888888887544 37788888888888888874
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=6.5e-23 Score=196.18 Aligned_cols=205 Identities=22% Similarity=0.215 Sum_probs=169.5
Q ss_pred CCCCCCEEEccCCcCcccCChhhh-hcCCCCCEEEccCCCCccccC----cCccCCCCCCEEEccCCcCccccChhhhhc
Q 038407 13 HQHDLEFVRLSHLNLNGEFPNWLL-ENNTKLESNFLLNNSLPGLFL----LPIHCHKSLMLLDVSNNNLQGHIPVKIGDF 87 (528)
Q Consensus 13 ~~~~L~~L~Ls~~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 87 (528)
.+++|++|++++|.+.+..|..++ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .++...+..
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhcc
Confidence 457799999999999988887654 789999999999999987544 34457899999999999998 455444445
Q ss_pred CCCCceeeccCCcCccc---C-CccccCCCCCCEEEccCCcccccCChh---hhhCCCCCCEEEccCCcCcccCCccCCC
Q 038407 88 LPSLKYFNISMNAFDSS---I-PTSFGNMNFLISLDLSNNQLTGEIPEH---LAMGCVDLEYLLLSNNSLEGHLFPRNFN 160 (528)
Q Consensus 88 l~~L~~L~L~~n~i~~~---~-~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 160 (528)
+++|++|++++|++.+. . +..+..+++|++|++++|+++ .++.. ++..+++|++|++++|++++..|+.+..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 89999999999998642 2 234578999999999999997 55543 4567899999999999999876777766
Q ss_pred C---CCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeec
Q 038407 161 L---TNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG 223 (528)
Q Consensus 161 l---~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 223 (528)
+ ++|++|++++|+++.+|..+. ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus 247 ~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 5 799999999999999887664 8999999999999854 43 6788999999999999874
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.3e-23 Score=202.11 Aligned_cols=223 Identities=17% Similarity=0.171 Sum_probs=175.9
Q ss_pred CCCCEEEccCCcCcccCChhhhhcC--CCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccc-cChhhhhcCCCC
Q 038407 15 HDLEFVRLSHLNLNGEFPNWLLENN--TKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGH-IPVKIGDFLPSL 91 (528)
Q Consensus 15 ~~L~~L~Ls~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~l~~L 91 (528)
..++.++++++.+. + ..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+. .+++|
T Consensus 47 ~~~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILS-QCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHT-TBCCC
T ss_pred hhheeeccccccCC---H-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHh-hCCCC
Confidence 34889999998776 2 334566 8999999999999877655 55789999999999998754 544444 48999
Q ss_pred ceeeccCCcCcccCCccccCCCCCCEEEccCC-cccccCChhhhhCCCCCCEEEccCC-cCccc-CCccCCCCC-CCCEE
Q 038407 92 KYFNISMNAFDSSIPTSFGNMNFLISLDLSNN-QLTGEIPEHLAMGCVDLEYLLLSNN-SLEGH-LFPRNFNLT-NLRRL 167 (528)
Q Consensus 92 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L 167 (528)
++|++++|.+++..+..+..+++|++|++++| .+++......+.++++|++|++++| .+++. .+..+..++ +|++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 99999999998878888999999999999999 5764222333457899999999999 88753 345567788 99999
Q ss_pred EccCCc--CC--ccCcccCCCCCCCEEEccCCc-cCccCCccccCCCCCCeeecCCce-eeccCcccccCCCCCCEEEcc
Q 038407 168 QLDGNH--FR--EILESLSKCSSLEGLYLSDNN-LSGKIPRWLGNLSMLQHIILPENH-FEGPIPMEFCQLDSLQILNIS 241 (528)
Q Consensus 168 ~l~~n~--~~--~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~L~ 241 (528)
++++|. ++ .++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|+++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 999994 43 344466778999999999998 666777788889999999999984 433333367889999999999
Q ss_pred cC
Q 038407 242 DN 243 (528)
Q Consensus 242 ~n 243 (528)
+|
T Consensus 281 ~~ 282 (336)
T 2ast_B 281 GI 282 (336)
T ss_dssp TS
T ss_pred Cc
Confidence 88
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.6e-23 Score=203.22 Aligned_cols=252 Identities=19% Similarity=0.213 Sum_probs=163.1
Q ss_pred CCCEEEccCCcccccCChhhhhCC--CCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCc--cCcccCCCCCCCE
Q 038407 114 FLISLDLSNNQLTGEIPEHLAMGC--VDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFRE--ILESLSKCSSLEG 189 (528)
Q Consensus 114 ~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~l~~L~~ 189 (528)
.++.++++++.+. + ..+..+ +.++.|++++|.+.+..+ .+..+++|++|++++|.+.. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---H-HHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4788888888765 2 222344 678888888888876443 35567888888888887764 3445677778888
Q ss_pred EEccCCccCccCCccccCCCCCCeeecCCc-eeecc-CcccccCCCCCCEEEcccC-cccccccchhhhccccceeeecc
Q 038407 190 LYLSDNNLSGKIPRWLGNLSMLQHIILPEN-HFEGP-IPMEFCQLDSLQILNISDN-NISGIYHHASILSLSKDQLVLAH 266 (528)
Q Consensus 190 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~i~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~L~~ 266 (528)
|++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++.
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------ 184 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------ 184 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------------
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------------
Confidence 888887777666667777777888888777 56542 4555667777777777777 66532
Q ss_pred CcccccCcccccCCC-CCCEEEccCCc--CCc-CCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceee
Q 038407 267 NNFEGEVPIQLCQLN-KLQLIDLSNNI--LSG-HIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKF 342 (528)
Q Consensus 267 n~l~~~~~~~l~~l~-~L~~L~ls~n~--l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (528)
.++..+..++ +|++|++++|. +++ .+|..+
T Consensus 185 -----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~----------------------------------------- 218 (336)
T 2ast_B 185 -----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV----------------------------------------- 218 (336)
T ss_dssp -----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-----------------------------------------
T ss_pred -----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH-----------------------------------------
Confidence 1233455677 78888888773 321 111100
Q ss_pred eeccccccccccccCcccEEECCCCc-CccCCChhhhccccCCEEeCCCcc-ccccCCccccCCCCCCeeeCcCCcCccc
Q 038407 343 TTKNIAYTYRGRVISYLSELDLSYNK-LIGQIPPQIGNLTRIQTLNLSYNN-LTGSIPSTFSNLKHIKSLDLSYNKLDGK 420 (528)
Q Consensus 343 ~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 420 (528)
..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|++|++++| ++..
T Consensus 219 -----------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~ 286 (336)
T 2ast_B 219 -----------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG 286 (336)
T ss_dssp -----------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred -----------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence 114567788888777 555666677777888888888874 22222225677788888888877 4322
Q ss_pred CccccccC-CCCCEEEccCCCCccCCCCCC
Q 038407 421 IPLQLVEL-NTLAVFNVAHNNLSGKIPEWT 449 (528)
Q Consensus 421 ~~~~~~~l-~~L~~L~ls~N~l~~~~p~~~ 449 (528)
.+..+ .++..|++++|++++..|...
T Consensus 287 ---~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 287 ---TLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp ---CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred ---HHHHHHhhCcceEEecccCccccCCcc
Confidence 23333 235566678888877777654
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.1e-21 Score=179.65 Aligned_cols=179 Identities=22% Similarity=0.279 Sum_probs=138.4
Q ss_pred CCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEE
Q 038407 65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLL 144 (528)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 144 (528)
..++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence 4567777777776 6665543 47778888888887777777777888888888888877 45555555777888888
Q ss_pred ccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeec
Q 038407 145 LSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG 223 (528)
Q Consensus 145 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 223 (528)
+++|.+++..+..+..+++|++|++++|.+..+++ .+..+++|++|++++|.+++..+..|..+++|++|++++|++++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 88888876666667778888888888888887776 46778888888888888886666678888888888888888887
Q ss_pred cCcccccCCCCCCEEEcccCccccc
Q 038407 224 PIPMEFCQLDSLQILNISDNNISGI 248 (528)
Q Consensus 224 ~~~~~l~~l~~L~~L~L~~n~l~~~ 248 (528)
..+..+..+++|+.|++++|++...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777788888899999998888765
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=7.7e-22 Score=191.99 Aligned_cols=241 Identities=19% Similarity=0.133 Sum_probs=186.8
Q ss_pred CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCce-eec
Q 038407 18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKY-FNI 96 (528)
Q Consensus 18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~-L~L 96 (528)
++++.++++++ ++|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.++...+..++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67888888887 889765 3689999999999998777889999999999999999876788777766778765 667
Q ss_pred cCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccC-CcCcccCCccCCCCC-CCCEEEccCCcC
Q 038407 97 SMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSN-NSLEGHLFPRNFNLT-NLRRLQLDGNHF 174 (528)
Q Consensus 97 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~~ 174 (528)
++|+++.+.|..|.++++|++|++++|++. .++...+....++..+++.+ +.+.......+..+. .++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 789999888999999999999999999998 67766555667788888865 567665555666654 688899999999
Q ss_pred CccCcccCCCCCCCEEEccC-CccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchh
Q 038407 175 REILESLSKCSSLEGLYLSD-NNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHAS 253 (528)
Q Consensus 175 ~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 253 (528)
+.+++......+|+++++++ |.++...++.|..+++|++|++++|+++...+.. +.+|+.|.+.++.--
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l------- 236 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNL------- 236 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTC-------
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCc-------
Confidence 98887665667889999875 5666444567888899999999999988544433 456666665544211
Q ss_pred hhccccceeeeccCcccccCcccccCCCCCCEEEccCC
Q 038407 254 ILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN 291 (528)
Q Consensus 254 ~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n 291 (528)
..+| .+..+++|+.++++++
T Consensus 237 -----------------~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 237 -----------------KKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp -----------------CCCC-CTTTCCSCCEEECSCH
T ss_pred -----------------CcCC-CchhCcChhhCcCCCC
Confidence 1233 3677889999998764
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=2e-21 Score=175.62 Aligned_cols=158 Identities=21% Similarity=0.267 Sum_probs=132.8
Q ss_pred ceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccc
Q 038407 260 DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQET 339 (528)
Q Consensus 260 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (528)
+.++++++.++. +|..+. ++++.|++++|.+++..+..+..
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~------------------------------------ 54 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSP------------------------------------ 54 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTT------------------------------------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhC------------------------------------
Confidence 345555555543 333332 67899999999988655544443
Q ss_pred eeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcc
Q 038407 340 FKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDG 419 (528)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 419 (528)
+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++
T Consensus 55 ----------------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 55 ----------------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp ----------------CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----------------CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 3479999999999998889999999999999999999997777788999999999999999999
Q ss_pred cCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407 420 KIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP 472 (528)
Q Consensus 420 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~ 472 (528)
..|..|..+++|++|++++|++++..+..+..+++|+.+++++|||.|+|++.
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 88999999999999999999999888888888999999999999999998754
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=3.5e-21 Score=187.31 Aligned_cols=240 Identities=19% Similarity=0.133 Sum_probs=124.0
Q ss_pred CEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCc-cCc-ccCCCCCCCE-EEc
Q 038407 116 ISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFRE-ILE-SLSKCSSLEG-LYL 192 (528)
Q Consensus 116 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~-~~~~l~~L~~-L~L 192 (528)
++++.++++++ .+|..++ +++++|++++|+|+...+..|.++++|++|+|++|++.+ ++. .|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45566666666 6665442 345666666666654433445555555555555555533 222 3445555443 333
Q ss_pred cCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCccccc
Q 038407 193 SDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGE 272 (528)
Q Consensus 193 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~ 272 (528)
.+|++....+..|..+++|++|++++|+++...+..+....++..+++.++ +.+...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l 144 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI 144 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence 344554444444555555555555555554333333333334444444321 233333
Q ss_pred CcccccCCC-CCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccc
Q 038407 273 VPIQLCQLN-KLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTY 351 (528)
Q Consensus 273 ~~~~l~~l~-~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (528)
.+..|..+. .++.|++++|+++...+..+.
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~------------------------------------------------- 175 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFN------------------------------------------------- 175 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSST-------------------------------------------------
T ss_pred cccchhhcchhhhhhccccccccCCChhhcc-------------------------------------------------
Confidence 333444443 466777777777632222221
Q ss_pred cccccCcccEEECCC-CcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCC
Q 038407 352 RGRVISYLSELDLSY-NKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNT 430 (528)
Q Consensus 352 ~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 430 (528)
..+|++|++++ |.++.+.+..|..+++|+.|+|++|+++...+..|.+ |+.|.+.++.-...+| .+..+++
T Consensus 176 ----~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP-~l~~l~~ 247 (350)
T 4ay9_X 176 ----GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLP-TLEKLVA 247 (350)
T ss_dssp ----TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCC-CTTTCCS
T ss_pred ----ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCC-CchhCcC
Confidence 12466777764 5555444456677777777777777777554444443 3444433333333455 3666777
Q ss_pred CCEEEccCC
Q 038407 431 LAVFNVAHN 439 (528)
Q Consensus 431 L~~L~ls~N 439 (528)
|+.++++++
T Consensus 248 L~~l~l~~~ 256 (350)
T 4ay9_X 248 LMEASLTYP 256 (350)
T ss_dssp CCEEECSCH
T ss_pred hhhCcCCCC
Confidence 777777653
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=7e-21 Score=172.07 Aligned_cols=117 Identities=18% Similarity=0.282 Sum_probs=104.6
Q ss_pred cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN 435 (528)
Q Consensus 356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 435 (528)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 45789999999999877777899999999999999999988888899999999999999999988888899999999999
Q ss_pred ccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407 436 VAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP 472 (528)
Q Consensus 436 ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~ 472 (528)
+++|++++..|..+..+++|+.+++++|||.|+|++.
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 9999999888888888999999999999999998753
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=2e-21 Score=189.77 Aligned_cols=181 Identities=20% Similarity=0.205 Sum_probs=138.9
Q ss_pred CeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCccccc-CCCCCCEEEccC
Q 038407 212 QHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLC-QLNKLQLIDLSN 290 (528)
Q Consensus 212 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~-~l~~L~~L~ls~ 290 (528)
+.++++++.++ .+|..+ .+.++.|++++|++++ ..+..+. .+++|+.|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~------------------------l~~~~~~~~l~~L~~L~L~~ 73 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSR------------------------LRAEWTPTRLTNLHSLLLSH 73 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCE------------------------ECTTSSSSCCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCc------------------------cChhhhhhcccccCEEECCC
Confidence 45666666666 344433 2345666666665554 4444566 789999999999
Q ss_pred CcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCc
Q 038407 291 NILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLI 370 (528)
Q Consensus 291 n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 370 (528)
|++++..+..+.. +++|++|+|++|+++
T Consensus 74 N~i~~i~~~~~~~----------------------------------------------------l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 74 NHLNFISSEAFVP----------------------------------------------------VPNLRYLDLSSNHLH 101 (361)
T ss_dssp SCCCEECTTTTTT----------------------------------------------------CTTCCEEECCSSCCC
T ss_pred CcCCccChhhccC----------------------------------------------------CCCCCEEECCCCcCC
Confidence 9988665555544 347999999999999
Q ss_pred cCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCcccc---ccCCCCCEEEccCCCCccCCCC
Q 038407 371 GQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQL---VELNTLAVFNVAHNNLSGKIPE 447 (528)
Q Consensus 371 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~ls~N~l~~~~p~ 447 (528)
+..+..|..+++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..| ..+++|+.|+|++|++++..+.
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 7777789999999999999999998888999999999999999999996555555 5689999999999999966555
Q ss_pred CCcccCC--CCcCcccCCCCCCCCCC
Q 038407 448 WTAQFAT--FNESSYEGNPFLCGLPL 471 (528)
Q Consensus 448 ~~~~~~~--l~~l~l~~Np~~c~~~l 471 (528)
.+..++. ++.+++.+|||.|+|++
T Consensus 182 ~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp HHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred HhhhccHhhcceEEecCCCccCCcCc
Confidence 5556665 47899999999999864
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=4.7e-20 Score=167.80 Aligned_cols=155 Identities=24% Similarity=0.322 Sum_probs=129.0
Q ss_pred ceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccc
Q 038407 260 DQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQET 339 (528)
Q Consensus 260 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (528)
+.++.+++.++ .+|..+ .++|+.|++++|.+++..|..+..
T Consensus 22 ~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~------------------------------------ 62 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDS------------------------------------ 62 (229)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTT------------------------------------
T ss_pred CEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhC------------------------------------
Confidence 44555555554 333333 278999999999998766666544
Q ss_pred eeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcc
Q 038407 340 FKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDG 419 (528)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 419 (528)
+++|++|++++|.+....+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++
T Consensus 63 ----------------l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~- 125 (229)
T 3e6j_A 63 ----------------LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT- 125 (229)
T ss_dssp ----------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred ----------------ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-
Confidence 347999999999998666677899999999999999999887888899999999999999998
Q ss_pred cCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407 420 KIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470 (528)
Q Consensus 420 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~ 470 (528)
.+|..+..+++|++|++++|++++..+..+..+++|+.+++.+|||.|+|+
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 678888999999999999999998777778889999999999999999986
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.9e-20 Score=165.98 Aligned_cols=179 Identities=26% Similarity=0.226 Sum_probs=102.5
Q ss_pred CEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeecc
Q 038407 18 EFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNIS 97 (528)
Q Consensus 18 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~ 97 (528)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 45666666665 555432 456777777777766655555666677777777776666 4554444445666666666
Q ss_pred CCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCcc
Q 038407 98 MNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI 177 (528)
Q Consensus 98 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 177 (528)
+|++++..+..|.++++|++|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--
Confidence 66666555555666666666666666665 444444445556666666666555433333445555555555555332
Q ss_pred CcccCCCCCCCEEEccCCccCccCCccccCC
Q 038407 178 LESLSKCSSLEGLYLSDNNLSGKIPRWLGNL 208 (528)
Q Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 208 (528)
..+++|+.|+++.|.+++.+|..++.+
T Consensus 162 ----~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 ----CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ----CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ----cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 233445555555555555555444433
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=4.7e-20 Score=188.56 Aligned_cols=182 Identities=28% Similarity=0.347 Sum_probs=113.2
Q ss_pred CCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEc
Q 038407 41 KLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDL 120 (528)
Q Consensus 41 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 120 (528)
+|+.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 66666666666665 44333 256667777766666 555 225667777777776665 444 443 6777777
Q ss_pred cCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCcc
Q 038407 121 SNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGK 200 (528)
Q Consensus 121 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 200 (528)
++|.++ .+|. .+++|++|++++|.+++ ++. .+++|++|++++|.++.++. +. ++|+.|++++|.++ .
T Consensus 128 s~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-c
Confidence 777666 4555 35667777777777665 333 45667777777777766655 44 66777777777766 4
Q ss_pred CCccccCCCCC-------CeeecCCceeeccCcccccCCCCCCEEEcccCcccccccc
Q 038407 201 IPRWLGNLSML-------QHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHH 251 (528)
Q Consensus 201 ~~~~l~~l~~L-------~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 251 (528)
+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++..+.
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 444 433 55 77777777777 4566566677777777777777665444
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=4.6e-19 Score=181.28 Aligned_cols=188 Identities=26% Similarity=0.300 Sum_probs=148.9
Q ss_pred CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceee
Q 038407 16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95 (528)
Q Consensus 16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~ 95 (528)
+|++|++++|++++ +|..+ .++|++|+|++|.++ .+| ..+++|++|++++|+++ .+|. +. .+|++|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP---ASLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC---TTCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh---cCCCEEE
Confidence 89999999998874 77754 378999999999888 344 45788999999999988 4776 33 3899999
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCC
Q 038407 96 ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR 175 (528)
Q Consensus 96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 175 (528)
+++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|++|++++|.+++ ++. +. ++|+.|++++|.++
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 99999886 454 5788999999999988 5776 46789999999999886 444 54 88999999999998
Q ss_pred ccCcccCCCCCC-------CEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCC
Q 038407 176 EILESLSKCSSL-------EGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLD 233 (528)
Q Consensus 176 ~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~ 233 (528)
.+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..++
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 8877 544 67 89999999888 5777777789999999999999888777766543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2e-19 Score=169.86 Aligned_cols=186 Identities=23% Similarity=0.284 Sum_probs=132.1
Q ss_pred EEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCC
Q 038407 20 VRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMN 99 (528)
Q Consensus 20 L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 99 (528)
+.+..+.+.+..+ +..+++|++|++++|.++.. ..+..+++|++|++++|+++ .++. +. .+++|++|++++|
T Consensus 29 ~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n 100 (291)
T 1h6t_A 29 DNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDEN 100 (291)
T ss_dssp HHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSS
T ss_pred HHhcCCCcccccc---hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCC
Confidence 3455555543333 34667777777777777654 24667777888888877777 4443 33 3677888888888
Q ss_pred cCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc
Q 038407 100 AFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE 179 (528)
Q Consensus 100 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 179 (528)
.+++. ..+..+++|++|++++|+++ .++. +..+++|++|++++|.+++. +.+..+++|++|++++|.+..+++
T Consensus 101 ~l~~~--~~l~~l~~L~~L~L~~n~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 101 KVKDL--SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CCCCG--GGGTTCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred cCCCC--hhhccCCCCCEEECCCCcCC-CChh--hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 77643 34777788888888888877 4432 34677888888888888763 567778888888888888887765
Q ss_pred ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeec
Q 038407 180 SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEG 223 (528)
Q Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 223 (528)
+..+++|+.|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 174 -l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred -hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77888888888888888743 3 47788888888888888874
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.8e-19 Score=159.51 Aligned_cols=129 Identities=28% Similarity=0.351 Sum_probs=52.3
Q ss_pred CCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEE
Q 038407 65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLL 144 (528)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 144 (528)
+|++|++++|.++ .++...+..+++|++|++++|++++..+..|..+++|++|++++|+++ .++...+..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence 4444444444444 233332222444444444444444333333444444444444444444 33333333344444444
Q ss_pred ccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCC
Q 038407 145 LSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDN 195 (528)
Q Consensus 145 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n 195 (528)
+++|.+++..+..+..+++|++|++++|.+..+++ .+..+++|++|++++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 44444443222233334444444444444443333 2333444444444444
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=6.9e-19 Score=158.96 Aligned_cols=120 Identities=23% Similarity=0.247 Sum_probs=99.3
Q ss_pred ccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeecccccccccc
Q 038407 275 IQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGR 354 (528)
Q Consensus 275 ~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (528)
..|..+++|+.|++++|.+++..+..+..
T Consensus 51 ~~~~~l~~L~~L~L~~N~i~~i~~~~~~~--------------------------------------------------- 79 (220)
T 2v70_A 51 GIFKKLPQLRKINFSNNKITDIEEGAFEG--------------------------------------------------- 79 (220)
T ss_dssp CCGGGCTTCCEEECCSSCCCEECTTTTTT---------------------------------------------------
T ss_pred hhhccCCCCCEEECCCCcCCEECHHHhCC---------------------------------------------------
Confidence 34667778888888888877655544443
Q ss_pred ccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEE
Q 038407 355 VISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVF 434 (528)
Q Consensus 355 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 434 (528)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|
T Consensus 80 -l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 80 -ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp -CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred -CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 3478888888888887777788999999999999999998888999999999999999999998888899999999999
Q ss_pred EccCCCCccCCC
Q 038407 435 NVAHNNLSGKIP 446 (528)
Q Consensus 435 ~ls~N~l~~~~p 446 (528)
++++|++.+..+
T Consensus 159 ~L~~N~l~c~c~ 170 (220)
T 2v70_A 159 NLLANPFNCNCY 170 (220)
T ss_dssp ECCSCCEECSGG
T ss_pred EecCcCCcCCCc
Confidence 999999886544
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=8e-19 Score=181.56 Aligned_cols=191 Identities=23% Similarity=0.285 Sum_probs=144.2
Q ss_pred CCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceee
Q 038407 16 DLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFN 95 (528)
Q Consensus 16 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~ 95 (528)
.+..++++.+.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.|+|++|.+. .++. +.. +++|+.|+
T Consensus 22 ~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~-l~~L~~L~ 93 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LTN-LKNLGWLF 93 (605)
T ss_dssp HHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCC-CCGG-GGG-CTTCCEEE
T ss_pred HHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCC-CChh-hcc-CCCCCEEE
Confidence 34455666666664433 45778888888888887654 25778888888888888887 4444 433 78888888
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCC
Q 038407 96 ISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFR 175 (528)
Q Consensus 96 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 175 (528)
|++|.+.+. ..+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+++. +.+..+++|+.|+|++|.+.
T Consensus 94 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 94 LDENKIKDL--SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CCSSCCCCC--TTSTTCTTCCEEECTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred CcCCCCCCC--hhhccCCCCCEEEecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 888888753 36788888888888888887 5543 34688888888888888863 66778888888888888888
Q ss_pred ccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeecc
Q 038407 176 EILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGP 224 (528)
Q Consensus 176 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 224 (528)
.+++ +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 167 ~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 167 DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred Cchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 7766 78888888888888888753 3577888888888888888754
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.3e-18 Score=164.44 Aligned_cols=188 Identities=23% Similarity=0.332 Sum_probs=138.8
Q ss_pred EEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCC
Q 038407 44 SNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNN 123 (528)
Q Consensus 44 ~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 123 (528)
.+.+..+.+++. ..+..+++|++|++++|.+. .++. +.. +++|++|++++|++++..+ +.++++|++|++++|
T Consensus 28 ~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~-~~~-l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 28 KDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHhcCCCcccc--cchhhcCcccEEEccCCCcc-cChh-Hhc-CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 334555555443 23446778888888888887 5543 333 7788888888888876544 778888888888888
Q ss_pred cccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCc
Q 038407 124 QLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPR 203 (528)
Q Consensus 124 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 203 (528)
.++ .++. +..+++|++|++++|++++ .+.+..+++|++|++++|.+..+ +.+..+++|++|++++|.+.+..+
T Consensus 101 ~l~-~~~~--l~~l~~L~~L~L~~n~i~~--~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 101 KVK-DLSS--LKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp CCC-CGGG--GTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCC-CChh--hccCCCCCEEECCCCcCCC--ChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-
Confidence 887 5554 3468888888888888876 35677788888888888888876 567778888888888888875443
Q ss_pred cccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCccccc
Q 038407 204 WLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGI 248 (528)
Q Consensus 204 ~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 248 (528)
+..+++|++|++++|.+++. + .+..+++|+.|++++|++...
T Consensus 174 -l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred -hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 77888888888888888753 3 477888888888888887654
No 109
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.79 E-value=6.1e-19 Score=155.65 Aligned_cols=115 Identities=23% Similarity=0.371 Sum_probs=107.8
Q ss_pred CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407 357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV 436 (528)
Q Consensus 357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 436 (528)
+++++|++++|.++ .+|..|..+++|+.|+|++|++++..+..|.++++|++|+|++|+++++.|..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 46999999999998 77899999999999999999999988899999999999999999999988889999999999999
Q ss_pred cCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407 437 AHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP 472 (528)
Q Consensus 437 s~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~ 472 (528)
++|++++..+..+..+++|+.+++++|||.|+|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 999999877777888999999999999999999754
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=7.2e-19 Score=155.24 Aligned_cols=115 Identities=28% Similarity=0.389 Sum_probs=108.1
Q ss_pred cccEEECCCCcCccCCCh-hhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407 358 YLSELDLSYNKLIGQIPP-QIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV 436 (528)
Q Consensus 358 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 436 (528)
++++|++++|.+.+..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 699999999999976664 5899999999999999999998999999999999999999999999888999999999999
Q ss_pred cCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCCC
Q 038407 437 AHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPLP 472 (528)
Q Consensus 437 s~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l~ 472 (528)
++|++++..|..+..+++|+.+++++|||.|+|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 999999999999999999999999999999999754
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.1e-18 Score=155.70 Aligned_cols=153 Identities=23% Similarity=0.267 Sum_probs=123.1
Q ss_pred CeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCC
Q 038407 212 QHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNN 291 (528)
Q Consensus 212 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n 291 (528)
+.++++++.++ .+|..+. ++|+.|++++|.+.+ ..+..|..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~------------------------i~~~~~~~l~~L~~L~Ls~N 66 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKV------------------------IPPGAFSPYKKLRRIDLSNN 66 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCE------------------------ECTTSSTTCTTCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCC------------------------cCHhHhhCCCCCCEEECCCC
Confidence 45666666666 3344332 456666666665543 44556888999999999999
Q ss_pred cCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCcc
Q 038407 292 ILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIG 371 (528)
Q Consensus 292 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 371 (528)
.+++..|..+.. +++|++|+|++|.++.
T Consensus 67 ~i~~~~~~~~~~----------------------------------------------------l~~L~~L~Ls~N~l~~ 94 (220)
T 2v9t_B 67 QISELAPDAFQG----------------------------------------------------LRSLNSLVLYGNKITE 94 (220)
T ss_dssp CCCEECTTTTTT----------------------------------------------------CSSCCEEECCSSCCCC
T ss_pred cCCCcCHHHhhC----------------------------------------------------CcCCCEEECCCCcCCc
Confidence 998766766654 3479999999999997
Q ss_pred CCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCcc
Q 038407 372 QIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSG 443 (528)
Q Consensus 372 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 443 (528)
..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++..
T Consensus 95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 666778999999999999999998889999999999999999999998888889999999999999999875
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=7.8e-19 Score=171.45 Aligned_cols=176 Identities=23% Similarity=0.227 Sum_probs=99.1
Q ss_pred CEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCcccc-CCCCCCEEEccCCcccccCChhhhhCCCCCCEEEc
Q 038407 67 MLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFG-NMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLL 145 (528)
Q Consensus 67 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 145 (528)
+.++++++.++ .+|..+. +.++.|++++|.+++..+..|. ++++|++|++++|+++ .++...+.++++|++|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 35555555555 4554332 2455666666666555555555 5566666666666665 444444445566666666
Q ss_pred cCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccc---cCCCCCCeeecCCcee
Q 038407 146 SNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWL---GNLSMLQHIILPENHF 221 (528)
Q Consensus 146 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~i 221 (528)
++|+++...+..|.++++|++|++++|.+..+++ .|..+++|+.|++++|.++...+..| ..+++|+.|++++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 6666655444455566666666666666665533 55566666666666666654333333 3466666666666666
Q ss_pred eccCcccccCCCC--CCEEEcccCcccc
Q 038407 222 EGPIPMEFCQLDS--LQILNISDNNISG 247 (528)
Q Consensus 222 ~~~~~~~l~~l~~--L~~L~L~~n~l~~ 247 (528)
+...+..+..++. ++.|++++|++..
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccC
Confidence 6544455555554 3667777776653
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.8e-18 Score=178.97 Aligned_cols=175 Identities=21% Similarity=0.278 Sum_probs=151.9
Q ss_pred hhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCC
Q 038407 11 FYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPS 90 (528)
Q Consensus 11 l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~ 90 (528)
+..+++|++|++++|.+. .++. +..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+. .++ .+.. +++
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~-l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKD-LKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTT-CTT
T ss_pred hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhcc-CCC
Confidence 467899999999999997 5664 6899999999999999987665 889999999999999998 555 4444 899
Q ss_pred CceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEcc
Q 038407 91 LKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLD 170 (528)
Q Consensus 91 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 170 (528)
|++|+|++|.+.+. ..+..+++|+.|++++|.++ .++ .+..+++|+.|++++|.+++..+ +..+++|+.|+|+
T Consensus 111 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC-CCG--GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCEEEecCCCCCCC--ccccCCCccCEEECCCCccC-Cch--hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence 99999999999864 56899999999999999998 553 34589999999999999997544 8899999999999
Q ss_pred CCcCCccCcccCCCCCCCEEEccCCccCccC
Q 038407 171 GNHFREILESLSKCSSLEGLYLSDNNLSGKI 201 (528)
Q Consensus 171 ~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (528)
+|.+..+ +.+..+++|+.|++++|++.+..
T Consensus 184 ~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 184 KNHISDL-RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SSCCCBC-GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCCCCC-hHHccCCCCCEEEccCCcCcCCc
Confidence 9999987 46889999999999999987543
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=4.1e-18 Score=154.97 Aligned_cols=153 Identities=23% Similarity=0.225 Sum_probs=97.5
Q ss_pred CCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEE
Q 038407 65 SLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLL 144 (528)
Q Consensus 65 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 144 (528)
.-+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++. .++...+.++++|++|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence 3556888887777 677654 357888888888888777777888888888888888876 66666656677777777
Q ss_pred ccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceee
Q 038407 145 LSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFE 222 (528)
Q Consensus 145 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 222 (528)
+++|+++...+..+..+++|++|++++|.+..++..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 777777654444455566666666666666555555555555555555555554333334444444444444444443
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=6.9e-21 Score=195.84 Aligned_cols=203 Identities=18% Similarity=0.190 Sum_probs=150.1
Q ss_pred CCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCce-------------eeccCcccccCCCCCCEEE-cccCcccc
Q 038407 182 SKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENH-------------FEGPIPMEFCQLDSLQILN-ISDNNISG 247 (528)
Q Consensus 182 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------i~~~~~~~l~~l~~L~~L~-L~~n~l~~ 247 (528)
..+++|+.|++++|.+. .+|..++.+++|++|++++|. ..+..|..+..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45677777777777776 567777777777777776654 3445566667777777777 56554432
Q ss_pred cccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccc
Q 038407 248 IYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEG 327 (528)
Q Consensus 248 ~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (528)
+ ..+.+.+|.+....+ ..|+.|++++|.+++ +|. +..
T Consensus 425 L-----------~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~------------------------ 461 (567)
T 1dce_A 425 L-----------RSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQ------------------------ 461 (567)
T ss_dssp H-----------HHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGG------------------------
T ss_pred h-----------hhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccc------------------------
Confidence 2 334455566554322 248899999999875 453 433
Q ss_pred cccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCC
Q 038407 328 FAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHI 407 (528)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 407 (528)
+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++ +| .++++++|
T Consensus 462 ----------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L 510 (567)
T 1dce_A 462 ----------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRL 510 (567)
T ss_dssp ----------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSC
T ss_pred ----------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCC
Confidence 457999999999998 788899999999999999999996 56 79999999
Q ss_pred CeeeCcCCcCcccC-ccccccCCCCCEEEccCCCCccCCCCCC---cccCCCCcCc
Q 038407 408 KSLDLSYNKLDGKI-PLQLVELNTLAVFNVAHNNLSGKIPEWT---AQFATFNESS 459 (528)
Q Consensus 408 ~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~p~~~---~~~~~l~~l~ 459 (528)
+.|+|++|++++.. |..+..+++|+.|++++|++++..|... ..+++|+.++
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 99999999999876 8899999999999999999997766432 1256666553
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.3e-18 Score=161.66 Aligned_cols=165 Identities=23% Similarity=0.261 Sum_probs=66.4
Q ss_pred CCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEcc
Q 038407 42 LESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLS 121 (528)
Q Consensus 42 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 121 (528)
+..++++++.+++.. .+..+++|++|++++|.++ .++ .+.. +++|++|++++|++++..+ +.++++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 333444444443322 2334444444444444444 333 2222 4444444444444443322 4444444444444
Q ss_pred CCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccC
Q 038407 122 NNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKI 201 (528)
Q Consensus 122 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (528)
+|+++ .++... . ++|++|++++|++++ .+.+..+++|++|++++|++++++ .+..+++|++|++++|.+.+.
T Consensus 94 ~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~--~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLK-NLNGIP--S-ACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCS-CCTTCC--C-SSCCEEECCSSCCSB--SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccC-CcCccc--c-CcccEEEccCCccCC--ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence 44444 233211 1 344444444444443 122334444444444444444332 233344444444444444322
Q ss_pred CccccCCCCCCeeecCCceee
Q 038407 202 PRWLGNLSMLQHIILPENHFE 222 (528)
Q Consensus 202 ~~~l~~l~~L~~L~L~~n~i~ 222 (528)
..+..+++|+.|++++|.++
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCccc
Confidence 23333444444444444433
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=7.2e-18 Score=149.63 Aligned_cols=153 Identities=18% Similarity=0.312 Sum_probs=108.0
Q ss_pred cCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCE
Q 038407 206 GNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQL 285 (528)
Q Consensus 206 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~ 285 (528)
..+++|++|++++|.++ .++ .+..+++|++|++++|.+... ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--------------------------~~l~~l~~L~~ 92 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--------------------------NPISGLSNLER 92 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--------------------------GGGTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--------------------------hhhhcCCCCCE
Confidence 44556666777666666 333 466667777777776644322 24667778888
Q ss_pred EEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECC
Q 038407 286 IDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLS 365 (528)
Q Consensus 286 L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 365 (528)
|++++|.+++..+..+.. +++|++|+++
T Consensus 93 L~l~~n~l~~~~~~~l~~----------------------------------------------------l~~L~~L~Ls 120 (197)
T 4ezg_A 93 LRIMGKDVTSDKIPNLSG----------------------------------------------------LTSLTLLDIS 120 (197)
T ss_dssp EEEECTTCBGGGSCCCTT----------------------------------------------------CTTCCEEECC
T ss_pred EEeECCccCcccChhhcC----------------------------------------------------CCCCCEEEec
Confidence 888888777655554433 3478888888
Q ss_pred CCcCccCCChhhhccccCCEEeCCCcc-ccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCc
Q 038407 366 YNKLIGQIPPQIGNLTRIQTLNLSYNN-LTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLS 442 (528)
Q Consensus 366 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 442 (528)
+|.+++..|..+..+++|+.|++++|. ++ .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|++.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 888887677788888888888888887 65 444 58888888888888888885 33 6788888888888888875
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=3.7e-18 Score=164.48 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=68.7
Q ss_pred CCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCC-eeecCCceeeccCcccccCCCCCCEE
Q 038407 161 LTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQ-HIILPENHFEGPIPMEFCQLDSLQIL 238 (528)
Q Consensus 161 l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~i~~~~~~~l~~l~~L~~L 238 (528)
+++|+.+++++|.++.++. +|.++++|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 5677777777777777766 6777777777777776 5555666777777777 777776 5555666677777777777
Q ss_pred EcccCcccccccchhhhccccceee
Q 038407 239 NISDNNISGIYHHASILSLSKDQLV 263 (528)
Q Consensus 239 ~L~~n~l~~~~~~~~~~~~~~~~L~ 263 (528)
++++|.+..+...+|.....++.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 7777777776666555544444443
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1e-17 Score=148.68 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=103.2
Q ss_pred hcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCC
Q 038407 37 ENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLI 116 (528)
Q Consensus 37 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 116 (528)
..+++|++|++++|.++. ++ .+..+++|++|++++|.+. .++ .+.. +++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-NYN-PISG-LSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-CCG-GGTT-CTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-cch-hhhc-CCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 456677777777777663 33 5666777777777777655 332 3333 67777777777777766667777777777
Q ss_pred EEEccCCcccccCChhhhhCCCCCCEEEccCCc-CcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCC
Q 038407 117 SLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNS-LEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDN 195 (528)
Q Consensus 117 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n 195 (528)
+|++++|.+++..+..+ ..+++|++|++++|. ++. + +.+..+++|++|++++|.+..++ .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~-~-~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITD-I-MPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCC-C-GGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccc-c-HhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence 77777777774444443 467777788887776 554 2 35677777888888888777765 6677788888888888
Q ss_pred ccC
Q 038407 196 NLS 198 (528)
Q Consensus 196 ~l~ 198 (528)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 765
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=8.7e-21 Score=195.10 Aligned_cols=105 Identities=24% Similarity=0.196 Sum_probs=55.5
Q ss_pred CCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccC
Q 038407 115 LISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSD 194 (528)
Q Consensus 115 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~ 194 (528)
|+.|++++|.++ .+|. +..+++|++|++++|.++ .+|..+..+++|++|++++|.++++| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 555555555555 3443 234555555555555555 34445555555555555555555544 455555555555555
Q ss_pred CccCccC-CccccCCCCCCeeecCCceeecc
Q 038407 195 NNLSGKI-PRWLGNLSMLQHIILPENHFEGP 224 (528)
Q Consensus 195 n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~ 224 (528)
|.+++.. |..+..+++|+.|++++|.+++.
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5555443 55555555555555555555543
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=5.6e-17 Score=143.06 Aligned_cols=114 Identities=26% Similarity=0.363 Sum_probs=91.0
Q ss_pred cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN 435 (528)
Q Consensus 356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 435 (528)
+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 45799999999999988888999999999999999999988888899999999999999999988899999999999999
Q ss_pred ccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407 436 VAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470 (528)
Q Consensus 436 ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~ 470 (528)
+++|++.+..+... -...++...+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCC
Confidence 99999987654211 01112233445555566544
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=9.6e-18 Score=155.80 Aligned_cols=171 Identities=22% Similarity=0.249 Sum_probs=138.0
Q ss_pred CCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCC
Q 038407 62 CHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLE 141 (528)
Q Consensus 62 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 141 (528)
.+.+++.++++++.++ .++ .+.. +++|++|++++|.++.. + .+..+++|++|++++|+++ .++. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~-l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKE-LSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHH-HTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhh-cCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccC-CChh--hccCCCCC
Confidence 4566777888888887 554 3444 78999999999998744 4 6888999999999999998 6665 45789999
Q ss_pred EEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCcee
Q 038407 142 YLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF 221 (528)
Q Consensus 142 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 221 (528)
+|++++|++++. + .+.. ++|++|++++|++..++ .+..+++|+.|++++|++++. + .+..+++|++|++++|.+
T Consensus 89 ~L~L~~N~l~~l-~-~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 89 ELSVNRNRLKNL-N-GIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EEECCSSCCSCC-T-TCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EEECCCCccCCc-C-cccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 999999998863 2 2333 88999999999998864 588889999999999998854 3 688889999999999999
Q ss_pred eccCcccccCCCCCCEEEcccCccccc
Q 038407 222 EGPIPMEFCQLDSLQILNISDNNISGI 248 (528)
Q Consensus 222 ~~~~~~~l~~l~~L~~L~L~~n~l~~~ 248 (528)
++. ..+..+++|+.|++++|++...
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 866 6688889999999999988765
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.4e-17 Score=160.43 Aligned_cols=287 Identities=12% Similarity=0.100 Sum_probs=163.8
Q ss_pred CCCCceeeccCCcCcccCCccccC-CCCCCEEEccCCcccc-cCChhhhhCCCCCCEEEccCCcCcccCCccCCC-----
Q 038407 88 LPSLKYFNISMNAFDSSIPTSFGN-MNFLISLDLSNNQLTG-EIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFN----- 160 (528)
Q Consensus 88 l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----- 160 (528)
+++++.|.++++ +.......+.. +++|+.|||++|++.. ..+... .+.++.+.+..+.+. ...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccccC---HHHhccccccc
Confidence 347888888764 22111123333 6778888888887761 111111 122344555555433 344555
Q ss_pred ---CCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCcee----eccCcccccCC
Q 038407 161 ---LTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHF----EGPIPMEFCQL 232 (528)
Q Consensus 161 ---l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i----~~~~~~~l~~l 232 (528)
+++|+.+++.+ .++.+++ +|.+|++|+.+++++|.+....+.+|..+.++..+....+.. ......+|.++
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77777777777 6776665 677777777777777777666666777766666666554322 11223344455
Q ss_pred CCCC-EEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccc
Q 038407 233 DSLQ-ILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYI 311 (528)
Q Consensus 233 ~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~ 311 (528)
..|+ .+.+....- +.. .....-....+++.+.+.++-.... +
T Consensus 176 ~~L~~~i~~~~~~~--l~~---------------------~~~~~~~~~~~~~~l~~~~~l~~~~----~---------- 218 (329)
T 3sb4_A 176 EPLETTIQVGAMGK--LED---------------------EIMKAGLQPRDINFLTIEGKLDNAD----F---------- 218 (329)
T ss_dssp CCCEEEEEECTTCC--HHH---------------------HHHHTTCCGGGCSEEEEEECCCHHH----H----------
T ss_pred cccceeEEecCCCc--HHH---------------------HHhhcccCccccceEEEeeeecHHH----H----------
Confidence 5555 333332110 000 0000111234455555554311100 0
Q ss_pred cCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCc
Q 038407 312 DTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYN 391 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 391 (528)
......+++|+++++++|.++.+.+.+|.++++|+.++|.+|
T Consensus 219 --------------------------------------~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 219 --------------------------------------KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp --------------------------------------HHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred --------------------------------------HHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence 000001346777777777777666667777777777777776
Q ss_pred cccccCCccccCCCCCC-eeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCc
Q 038407 392 NLTGSIPSTFSNLKHIK-SLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESS 459 (528)
Q Consensus 392 ~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~ 459 (528)
++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++...+..+..+++|+.+.
T Consensus 261 -i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 261 -LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred -cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666667777777777 777777 66666667777777777777777777766666676666666553
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=5.6e-17 Score=141.23 Aligned_cols=114 Identities=24% Similarity=0.277 Sum_probs=105.0
Q ss_pred CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407 357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV 436 (528)
Q Consensus 357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 436 (528)
++|++|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 47999999999999777778899999999999999999888888999999999999999999887778899999999999
Q ss_pred cCCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407 437 AHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470 (528)
Q Consensus 437 s~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~ 470 (528)
++|++++..+..+..+++|+.+++++||+.|+|+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999997777777789999999999999999886
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=1.1e-15 Score=150.19 Aligned_cols=265 Identities=12% Similarity=0.100 Sum_probs=160.0
Q ss_pred CCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCce
Q 038407 14 QHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKY 93 (528)
Q Consensus 14 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 93 (528)
+..++.+.+.++ ++ .++...|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+. .++...+..+++|+.
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 355666665543 32 4555555554 5666666554 554555556553 566666664 444 555555555666777
Q ss_pred eeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCc
Q 038407 94 FNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNH 173 (528)
Q Consensus 94 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 173 (528)
++++.|.++.+....|. ..+|+.+.+..+ +. .++...|.++++|+.+++..+ ++......|.+ .+|+.+.+. +.
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 77766666655555555 366666666533 55 566666666666777766653 33333444444 566666663 33
Q ss_pred CCccCc-ccCCCCCCCEEEccCCccC-----ccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccc
Q 038407 174 FREILE-SLSKCSSLEGLYLSDNNLS-----GKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISG 247 (528)
Q Consensus 174 ~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 247 (528)
+..+.. +|.+|++|+.+++.++.+. ...+.+|.++++|+.+++.+ .++.+...+|.++++|+.+.+..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 555544 6666777777776665443 34455666777777777763 355555666777777777777443 555
Q ss_pred cccchhhhccccceeeeccCcccccCcccccCCC-CCCEEEccCCcCC
Q 038407 248 IYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLN-KLQLIDLSNNILS 294 (528)
Q Consensus 248 ~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~-~L~~L~ls~n~l~ 294 (528)
+...+|... .++.+.+.+|.........|.+++ .++.|.+..+.+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 555555554 557777777766666666777774 7888888876543
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=2.2e-15 Score=148.08 Aligned_cols=253 Identities=13% Similarity=0.060 Sum_probs=192.6
Q ss_pred hhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCC
Q 038407 36 LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL 115 (528)
Q Consensus 36 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 115 (528)
+..+..++.+.+.+ .++.....+|.++ +|+.+.+..+ ++ .++...+..+ +|+.+.+.. .++.+...+|.++++|
T Consensus 109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccC
Confidence 44567888888864 4566666778775 7999998766 66 6777777654 799999876 6777777889999999
Q ss_pred CEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccC
Q 038407 116 ISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSD 194 (528)
Q Consensus 116 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~ 194 (528)
+.+++.+|.++ .++...|. +.+|+.+.+..+ ++......|.++++|+.+.+..+ +..+.. +|.+ .+|+.+.+.
T Consensus 183 ~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp- 256 (401)
T 4fdw_A 183 KKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP- 256 (401)
T ss_dssp CEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-
T ss_pred CeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-
Confidence 99999988888 88888875 688999999854 66666777888999999999875 566655 6666 789999985
Q ss_pred CccCccCCccccCCCCCCeeecCCceee-----ccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcc
Q 038407 195 NNLSGKIPRWLGNLSMLQHIILPENHFE-----GPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNF 269 (528)
Q Consensus 195 n~l~~~~~~~l~~l~~L~~L~L~~n~i~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l 269 (528)
+.+......+|.++++|+.+++.++.+. .+...+|.+|++|+.+++. +.+..+...+|.....++.+.+.++ +
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence 4466566778889999999998887664 4566788899999999998 4577777777766667788888554 6
Q ss_pred cccCcccccCCCCCCEEEccCCcCCcCCCCCCcC
Q 038407 270 EGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDN 303 (528)
Q Consensus 270 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~ 303 (528)
+.....+|.++ +|+.+++++|......+..+..
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 66667788888 8999999988766443444433
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=1.6e-15 Score=149.76 Aligned_cols=315 Identities=14% Similarity=0.130 Sum_probs=203.8
Q ss_pred cCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccc
Q 038407 30 EFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSF 109 (528)
Q Consensus 30 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 109 (528)
.+....|.+|.+|+.+.|.. .++.....+|.+|.+|+.+++.++ ++ .++...+..+++|+.+.+..+ +..+...+|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence 56666688888888888864 466666778888888888888654 55 666777777788888777644 444556667
Q ss_pred cCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCC
Q 038407 110 GNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLE 188 (528)
Q Consensus 110 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~ 188 (528)
.+...+...... ... .+....|.++.+|+.+.+..+. .......|.++.+|+.+.+..+ +..+.. +|..+..|+
T Consensus 137 ~~~~~~~~~~~~--~~~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 137 KGCDFKEITIPE--GVT-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTCCCSEEECCT--TCC-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred ecccccccccCc--ccc-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 766543333222 223 4555667788888888887653 3344566778888888888776 555544 788888888
Q ss_pred EEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCc
Q 038407 189 GLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNN 268 (528)
Q Consensus 189 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~ 268 (528)
.+.+..+... +.........|+.+.+.... +.+...+|..+..|+.+.+..+... +
T Consensus 212 ~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i-------------------- 267 (394)
T 4fs7_A 212 NMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-I-------------------- 267 (394)
T ss_dssp BCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-E--------------------
T ss_pred eeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-e--------------------
Confidence 8887765432 23334455678888876543 3355567888888888888765322 1
Q ss_pred ccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeecccc
Q 038407 269 FEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIA 348 (528)
Q Consensus 269 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (528)
....|..+..++.+....+.+.. ..+.
T Consensus 268 ----~~~~F~~~~~l~~~~~~~~~i~~---~~F~---------------------------------------------- 294 (394)
T 4fs7_A 268 ----GGSLFYNCSGLKKVIYGSVIVPE---KTFY---------------------------------------------- 294 (394)
T ss_dssp ----CSCTTTTCTTCCEEEECSSEECT---TTTT----------------------------------------------
T ss_pred ----eccccccccccceeccCceeecc---cccc----------------------------------------------
Confidence 12345556666666554432210 0111
Q ss_pred ccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccC
Q 038407 349 YTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVEL 428 (528)
Q Consensus 349 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 428 (528)
.+.+|+.+.+.++ ++.+...+|.++++|+.++|..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++
T Consensus 295 ------~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 295 ------GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp ------TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred ------ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 1335666666543 44455567777777777777644 55566677777788888877766 665666777777
Q ss_pred CCCCEEEccCC
Q 038407 429 NTLAVFNVAHN 439 (528)
Q Consensus 429 ~~L~~L~ls~N 439 (528)
++|+.+++..+
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 78888777654
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=2e-17 Score=175.46 Aligned_cols=116 Identities=24% Similarity=0.354 Sum_probs=55.9
Q ss_pred ccCCCCCCCCEEEccCCcCCccCcccCCCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCC
Q 038407 156 PRNFNLTNLRRLQLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSL 235 (528)
Q Consensus 156 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 235 (528)
..+..++.|+.|+|++|.+..++..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..+++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 3344445555555555555544444444455555555555554 44444455555555555555554 334444445555
Q ss_pred CEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccCCcCCcCCC
Q 038407 236 QILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIP 298 (528)
Q Consensus 236 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 298 (528)
++|+|++|.++ .+|..|..+++|+.|++++|.+++.+|
T Consensus 296 ~~L~L~~N~l~-------------------------~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 296 KYFYFFDNMVT-------------------------TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SEEECCSSCCC-------------------------CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CEEECCCCCCC-------------------------ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 55554444443 223345555566666666665554433
No 129
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.66 E-value=9.4e-15 Score=144.32 Aligned_cols=317 Identities=13% Similarity=0.054 Sum_probs=198.6
Q ss_pred CccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCCh
Q 038407 52 LPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE 131 (528)
Q Consensus 52 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 131 (528)
++.....+|.++.+|+.+.+.. .++ .++...+..+++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +. .+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence 4455566788888888888864 365 677777776788888888654 55566677888888887776544 44 5555
Q ss_pred hhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCccCCccccCCCC
Q 038407 132 HLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGKIPRWLGNLSM 210 (528)
Q Consensus 132 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 210 (528)
..|.++..++........ ......|.++++|+.+.+..+. ..+.. .|..+.+|+.+++..+ +......+|..+..
T Consensus 134 ~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccccccCcccc--ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence 555555433333322222 2234567778888888887553 33433 6777888888888765 44455667777888
Q ss_pred CCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEEccC
Q 038407 211 LQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLIDLSN 290 (528)
Q Consensus 211 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~ 290 (528)
|+.+.+..+... . ...+....+|+.+.+.... .. ....++..+..|+.+.+..
T Consensus 210 L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~~-~~------------------------i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 210 LENMEFPNSLYY-L-GDFALSKTGVKNIIIPDSF-TE------------------------LGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp CCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTTC-CE------------------------ECSSTTTTCSSCCEEEECC
T ss_pred cceeecCCCceE-e-ehhhcccCCCceEEECCCc-ee------------------------cccccccccccceeEEcCC
Confidence 888877765443 2 2233345667776654321 11 1223566777777777766
Q ss_pred CcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCCcCc
Q 038407 291 NILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYNKLI 370 (528)
Q Consensus 291 n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 370 (528)
+... .....+.. ...++.+......+
T Consensus 263 ~~~~-i~~~~F~~----------------------------------------------------~~~l~~~~~~~~~i- 288 (394)
T 4fs7_A 263 NKLR-IGGSLFYN----------------------------------------------------CSGLKKVIYGSVIV- 288 (394)
T ss_dssp TTCE-ECSCTTTT----------------------------------------------------CTTCCEEEECSSEE-
T ss_pred Ccce-eecccccc----------------------------------------------------ccccceeccCceee-
Confidence 5332 11111111 23455555554432
Q ss_pred cCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCCCCc
Q 038407 371 GQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPEWTA 450 (528)
Q Consensus 371 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 450 (528)
....|..+.+|+.+.+..+ ++.+...+|.++++|+.+++.++ ++.+...+|.++++|+.+++..+ ++.....++.
T Consensus 289 --~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 289 --PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp --CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred --ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 2346777788888888655 55566677888888888888654 66666777888888888888766 6656666777
Q ss_pred ccCCCCcCcccCC
Q 038407 451 QFATFNESSYEGN 463 (528)
Q Consensus 451 ~~~~l~~l~l~~N 463 (528)
.+.+|+.+.+..+
T Consensus 364 ~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 364 GCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEEEEEGG
T ss_pred CCCCCCEEEECCC
Confidence 7777777766543
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.66 E-value=3.7e-16 Score=134.76 Aligned_cols=110 Identities=24% Similarity=0.262 Sum_probs=100.8
Q ss_pred cccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA 437 (528)
Q Consensus 358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls 437 (528)
..+++++++|.++ .+|..+ .++|+.|+|++|++++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4689999999998 567655 3899999999999999889999999999999999999998888888999999999999
Q ss_pred CCCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407 438 HNNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470 (528)
Q Consensus 438 ~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~ 470 (528)
+|++++..+..+..+++|+.+++++|||.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998888788899999999999999999986
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=2.3e-17 Score=174.95 Aligned_cols=119 Identities=31% Similarity=0.343 Sum_probs=54.7
Q ss_pred CccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCC
Q 038407 106 PTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCS 185 (528)
Q Consensus 106 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~ 185 (528)
+..|..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..+..+++|++|+|++|.+..+|..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 444444555555555555544 4444443 3445555555555544 334444444455555555555444444444444
Q ss_pred CCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCccc
Q 038407 186 SLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPME 228 (528)
Q Consensus 186 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 228 (528)
+|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 4555555544444 33444444444445555444444444433
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=1.1e-15 Score=131.75 Aligned_cols=135 Identities=21% Similarity=0.221 Sum_probs=92.6
Q ss_pred CCCCCCEEEccCCcCc-ccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407 13 HQHDLEFVRLSHLNLN-GEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSL 91 (528)
Q Consensus 13 ~~~~L~~L~Ls~~~~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L 91 (528)
..++|++|++++|.++ +.+|.. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.. +++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTC
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCC
Confidence 3467888888888776 566655 46777888888888777765 66777777888888887777445544444 6777
Q ss_pred ceeeccCCcCcccCC-ccccCCCCCCEEEccCCcccccCCh---hhhhCCCCCCEEEccCCcCcc
Q 038407 92 KYFNISMNAFDSSIP-TSFGNMNFLISLDLSNNQLTGEIPE---HLAMGCVDLEYLLLSNNSLEG 152 (528)
Q Consensus 92 ~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~ 152 (528)
++|++++|.+++... ..+..+++|++|++++|.++ .+|. ..+..+++|++|++++|.+..
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhh
Confidence 777777777765322 56777777777777777776 5554 344566777777777766653
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=9.5e-16 Score=132.20 Aligned_cols=131 Identities=20% Similarity=0.173 Sum_probs=66.6
Q ss_pred CCCCEEEccCCcCc-cccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCE
Q 038407 64 KSLMLLDVSNNNLQ-GHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEY 142 (528)
Q Consensus 64 ~~L~~L~ls~n~l~-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 142 (528)
++|++|++++|.++ +.+|..+.. +++|++|++++|.+++. ..+..+++|++|++++|.+++.+|.. +..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML-AEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH-HhhCCCCCE
Confidence 34444444444443 333333222 44555555555554433 44455555555555555555323332 223555555
Q ss_pred EEccCCcCcccC-CccCCCCCCCCEEEccCCcCCccCc----ccCCCCCCCEEEccCCccC
Q 038407 143 LLLSNNSLEGHL-FPRNFNLTNLRRLQLDGNHFREILE----SLSKCSSLEGLYLSDNNLS 198 (528)
Q Consensus 143 L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~l~~L~~L~L~~n~l~ 198 (528)
|++++|.+++.. +..+..+++|++|++++|.+..+++ .+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555555555421 1445555666666666666655554 4556666666666666554
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=132.60 Aligned_cols=89 Identities=29% Similarity=0.350 Sum_probs=81.5
Q ss_pred cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN 435 (528)
Q Consensus 356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 435 (528)
+++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|.++++|+.|+|++|+++...+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 45799999999999988888899999999999999999988888999999999999999999977777899999999999
Q ss_pred ccCCCCccC
Q 038407 436 VAHNNLSGK 444 (528)
Q Consensus 436 ls~N~l~~~ 444 (528)
+++|++...
T Consensus 133 L~~N~~~C~ 141 (193)
T 2wfh_A 133 IGANPLYCD 141 (193)
T ss_dssp CCSSCEECS
T ss_pred eCCCCeecC
Confidence 999999753
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=7e-16 Score=130.11 Aligned_cols=129 Identities=22% Similarity=0.247 Sum_probs=103.4
Q ss_pred CCCCCCEEEccCCcCc-ccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCC
Q 038407 13 HQHDLEFVRLSHLNLN-GEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSL 91 (528)
Q Consensus 13 ~~~~L~~L~Ls~~~~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L 91 (528)
..++|++|++++|.++ +.+|.. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.. +++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTC
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCC
Confidence 3478999999999987 677764 57899999999999998876 67888999999999999998556655544 7899
Q ss_pred ceeeccCCcCccc-CCccccCCCCCCEEEccCCcccccCCh---hhhhCCCCCCEEEcc
Q 038407 92 KYFNISMNAFDSS-IPTSFGNMNFLISLDLSNNQLTGEIPE---HLAMGCVDLEYLLLS 146 (528)
Q Consensus 92 ~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~ 146 (528)
++|++++|.+++. .+..+..+++|++|++++|.++ .++. ..+..+++|++|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 9999999998864 3477888899999999999888 5554 455678888888875
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.62 E-value=1.4e-15 Score=131.60 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=98.9
Q ss_pred ccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccC
Q 038407 359 LSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAH 438 (528)
Q Consensus 359 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~ 438 (528)
-+.+++++|.+. .+|..+. ++|+.|+|++|++++..|..|.++++|++|+|++|+++++.+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999997 6676554 8999999999999998899999999999999999999987777789999999999999
Q ss_pred CCCccCCCCCCcccCCCCcCcccCCCCCCCCC
Q 038407 439 NNLSGKIPEWTAQFATFNESSYEGNPFLCGLP 470 (528)
Q Consensus 439 N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~ 470 (528)
|++++..+..+..+++|+.+++++|||.|+|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99998777778889999999999999999986
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.6e-15 Score=127.94 Aligned_cols=83 Identities=23% Similarity=0.250 Sum_probs=59.6
Q ss_pred cCcccEEECCCCcCccCCChhhhccccCCEEeCCCcccccc-CCccccCCCCCCeeeCcCCcCcccCc---cccccCCCC
Q 038407 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGS-IPSTFSNLKHIKSLDLSYNKLDGKIP---LQLVELNTL 431 (528)
Q Consensus 356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L 431 (528)
+++|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 34677788888877766677777777788888888877753 23667777778888888887776554 467777777
Q ss_pred CEEEccC
Q 038407 432 AVFNVAH 438 (528)
Q Consensus 432 ~~L~ls~ 438 (528)
+.|++++
T Consensus 143 ~~L~l~d 149 (149)
T 2je0_A 143 TYLDGYD 149 (149)
T ss_dssp CEETTBC
T ss_pred ccccCCC
Confidence 7777653
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=5.4e-15 Score=128.58 Aligned_cols=91 Identities=24% Similarity=0.279 Sum_probs=80.1
Q ss_pred cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN 435 (528)
Q Consensus 356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 435 (528)
+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 34799999999999877777789999999999999999988888889999999999999999977776778899999999
Q ss_pred ccCCCCccCCC
Q 038407 436 VAHNNLSGKIP 446 (528)
Q Consensus 436 ls~N~l~~~~p 446 (528)
+++|++.+..|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 99999987655
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=5.1e-15 Score=128.55 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=108.1
Q ss_pred hhhhCCCCCCEEEccCCcCcccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcC
Q 038407 9 NFFYHQHDLEFVRLSHLNLNGEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFL 88 (528)
Q Consensus 9 ~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l 88 (528)
..+.++++|++|++++|+++ .+|. +....++|++|++++|.+++. ..+..+++|++|++++|.++ .+|..++..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence 34577889999999999987 5664 333445999999999999875 67888999999999999998 6666664558
Q ss_pred CCCceeeccCCcCcccCCc--cccCCCCCCEEEccCCcccccCChh---hhhCCCCCCEEEccCCcCc
Q 038407 89 PSLKYFNISMNAFDSSIPT--SFGNMNFLISLDLSNNQLTGEIPEH---LAMGCVDLEYLLLSNNSLE 151 (528)
Q Consensus 89 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~ 151 (528)
++|++|++++|.+.. +|. .+..+++|+.|++++|.++ .+|.. .+..+++|++|++++|...
T Consensus 88 ~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 899999999999864 444 7888899999999999987 67764 3457888888888888665
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1e-14 Score=126.60 Aligned_cols=131 Identities=23% Similarity=0.185 Sum_probs=75.9
Q ss_pred ccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCC
Q 038407 60 IHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVD 139 (528)
Q Consensus 60 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 139 (528)
+..+.+|++|++++|.++ .++. +....++|++|++++|.+++. ..|..+++|++|++++|.++ .+|..++..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 345566666777776666 4433 334344777777777777654 46667777777777777776 555555455666
Q ss_pred CCEEEccCCcCcccCCc--cCCCCCCCCEEEccCCcCCccCcc----cCCCCCCCEEEccCCc
Q 038407 140 LEYLLLSNNSLEGHLFP--RNFNLTNLRRLQLDGNHFREILES----LSKCSSLEGLYLSDNN 196 (528)
Q Consensus 140 L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~L~~n~ 196 (528)
|++|++++|.++. ++. .+..+++|++|++++|.+..++.. +..+++|+.|++++|.
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666666666653 222 344555555555555555544432 4444444444444443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=5.6e-14 Score=120.98 Aligned_cols=90 Identities=22% Similarity=0.223 Sum_probs=83.3
Q ss_pred CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407 357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV 436 (528)
Q Consensus 357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 436 (528)
+++++|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 36999999999999888999999999999999999999888888999999999999999999877778999999999999
Q ss_pred cCCCCccCCC
Q 038407 437 AHNNLSGKIP 446 (528)
Q Consensus 437 s~N~l~~~~p 446 (528)
++|++....+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999986543
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=5.8e-12 Score=124.25 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=88.1
Q ss_pred cCChhhhhcCC-CCCEEEccCCCCccccCcCccCCCCCCEEEccCCc---CccccChhhhhcCCCCceeeccCCcCcccC
Q 038407 30 EFPNWLLENNT-KLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN---LQGHIPVKIGDFLPSLKYFNISMNAFDSSI 105 (528)
Q Consensus 30 ~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 105 (528)
.++...|.+++ .|+.+.+.. .++.....+|.+|.+|+.+.+..+. ++ .+....+..+.+|+.+.+..+ ++.+.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred EcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh
Confidence 34444466663 477777754 3555556667777777777776542 44 555566655666766666543 44455
Q ss_pred CccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCcccCCCC
Q 038407 106 PTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILESLSKCS 185 (528)
Q Consensus 106 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~ 185 (528)
...|.++.+|+.+.+..+ +. .+....|..+..|+.+.+..+ ++......| ...+|+.+.+..+...--..++..+.
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~~~i~~~af~~c~ 205 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKVTRIGTNAFSECF 205 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTCCEECTTTTTTCT
T ss_pred hhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEeccccc-cccceeEEEECCcccccccchhhhcc
Confidence 566666777777776543 33 555555556666776666544 222222233 23456666665443222223555566
Q ss_pred CCCEEEccCC
Q 038407 186 SLEGLYLSDN 195 (528)
Q Consensus 186 ~L~~L~L~~n 195 (528)
+++.......
T Consensus 206 ~l~~~~~~~~ 215 (394)
T 4gt6_A 206 ALSTITSDSE 215 (394)
T ss_dssp TCCEEEECCS
T ss_pred ccceeccccc
Confidence 6665554443
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.50 E-value=4.2e-14 Score=137.30 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=97.3
Q ss_pred cEEECCCC-cCccCCChhhhccccCCEEeCCC-ccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407 360 SELDLSYN-KLIGQIPPQIGNLTRIQTLNLSY-NNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA 437 (528)
Q Consensus 360 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls 437 (528)
..++++++ .++ .+|. +..+++|+.|+|++ |++++..+..|.++++|+.|+|++|+|+++.|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788888 888 5787 99999999999996 99998888899999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407 438 HNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 438 ~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l 471 (528)
+|+|++..+..+..+. |+.+++.+|+|.|+|++
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999977766665554 99999999999999864
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=1.6e-13 Score=118.58 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=81.4
Q ss_pred CcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEc
Q 038407 357 SYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNV 436 (528)
Q Consensus 357 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 436 (528)
++|++|++++|.+.+..|..|..+++|+.|+|++|++++..+..|.++++|++|+|++|+|++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 36999999999999888999999999999999999999877778899999999999999999777767999999999999
Q ss_pred cCCCCccC
Q 038407 437 AHNNLSGK 444 (528)
Q Consensus 437 s~N~l~~~ 444 (528)
++|++...
T Consensus 113 ~~N~~~c~ 120 (174)
T 2r9u_A 113 YNNPWDCE 120 (174)
T ss_dssp CSSCBCTT
T ss_pred CCCCcccc
Confidence 99999854
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=5.2e-16 Score=137.72 Aligned_cols=135 Identities=22% Similarity=0.217 Sum_probs=91.0
Q ss_pred hhCCCCCCEEEccCCcCcccCCh------hhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhh
Q 038407 11 FYHQHDLEFVRLSHLNLNGEFPN------WLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKI 84 (528)
Q Consensus 11 l~~~~~L~~L~Ls~~~~~~~~~~------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 84 (528)
+...+.++.++++.+.+.+.+|. . +..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 45567777777777777766664 3 5677888888888877776 44 6777777888888877777 666544
Q ss_pred hhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCCh-hhhhCCCCCCEEEccCCcCccc
Q 038407 85 GDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPE-HLAMGCVDLEYLLLSNNSLEGH 153 (528)
Q Consensus 85 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 153 (528)
.. +++|++|++++|++++. | .+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+++.
T Consensus 90 ~~-~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 90 AV-ADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HH-HHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred hc-CCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccc
Confidence 43 56777777777777653 3 4666677777777777776 4443 2334566677777777666543
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.47 E-value=6.5e-12 Score=123.91 Aligned_cols=100 Identities=5% Similarity=0.115 Sum_probs=66.8
Q ss_pred cCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407 356 ISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN 435 (528)
Q Consensus 356 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 435 (528)
+..|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+++.+..+ ++.+...+|.++++|+.++
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 3467888875 4455566678888888888888764 66566778888888888888654 6667777888888888888
Q ss_pred ccCCCCccCCCCCCcccCCCCcCccc
Q 038407 436 VAHNNLSGKIPEWTAQFATFNESSYE 461 (528)
Q Consensus 436 ls~N~l~~~~p~~~~~~~~l~~l~l~ 461 (528)
+.++.... ..+.....|+.+.+.
T Consensus 364 ~~~~~~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 364 YSGSRSQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp ESSCHHHH---HTCBCCCCC------
T ss_pred ECCceeeh---hhhhccCCCCEEEeC
Confidence 88875431 123334445544443
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=7.7e-16 Score=136.58 Aligned_cols=128 Identities=25% Similarity=0.296 Sum_probs=60.8
Q ss_pred CCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEE
Q 038407 88 LPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRL 167 (528)
Q Consensus 88 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 167 (528)
+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+. .+++|++|++++|+++
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~-~~~~L~~L~L~~N~l~---------------- 106 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA-VADTLEELWISYNQIA---------------- 106 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH-HHHHCSEEEEEEEECC----------------
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh-cCCcCCEEECcCCcCC----------------
Confidence 4555555555555543 33 4455555555555555554 4443322 2344555555555444
Q ss_pred EccCCcCCccCcccCCCCCCCEEEccCCccCccCC-ccccCCCCCCeeecCCceeeccCcc----------cccCCCCCC
Q 038407 168 QLDGNHFREILESLSKCSSLEGLYLSDNNLSGKIP-RWLGNLSMLQHIILPENHFEGPIPM----------EFCQLDSLQ 236 (528)
Q Consensus 168 ~l~~n~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~----------~l~~l~~L~ 236 (528)
.++ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|. .+..+++|+
T Consensus 107 --------~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 107 --------SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp --------CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred --------cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 432 23344444555555544442211 2344455555555555555433322 255566666
Q ss_pred EEEcccCccc
Q 038407 237 ILNISDNNIS 246 (528)
Q Consensus 237 ~L~L~~n~l~ 246 (528)
.|+ ++.++
T Consensus 178 ~Ld--~~~i~ 185 (198)
T 1ds9_A 178 KLD--GMPVD 185 (198)
T ss_dssp EEC--CGGGT
T ss_pred EEC--CcccC
Confidence 665 44443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=1.6e-12 Score=126.04 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=90.9
Q ss_pred CcccEEECCC-CcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEE
Q 038407 357 SYLSELDLSY-NKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFN 435 (528)
Q Consensus 357 ~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 435 (528)
.+|++|+|++ |.+.+..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 3799999996 999988888999999999999999999999999999999999999999999977777777776 99999
Q ss_pred ccCCCCccCCC-CCCcccCCCCcCcccCCCCCCCCCC
Q 038407 436 VAHNNLSGKIP-EWTAQFATFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 436 ls~N~l~~~~p-~~~~~~~~l~~l~l~~Np~~c~~~l 471 (528)
|++|++..... .++..+.......+..+.+.|..+.
T Consensus 110 l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 110 LSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp CCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred eeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 99999985422 1111222223344556677776543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=5.3e-14 Score=136.93 Aligned_cols=109 Identities=18% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCCCEEEccCCcCccc----CCccCCCCCCCCEEEccCCcCCcc-----CcccCCCCCCCEEEccCCccCcc----CCcc
Q 038407 138 VDLEYLLLSNNSLEGH----LFPRNFNLTNLRRLQLDGNHFREI-----LESLSKCSSLEGLYLSDNNLSGK----IPRW 204 (528)
Q Consensus 138 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~ 204 (528)
++|++|++++|.++.. +...+...++|++|++++|.+... ...+...++|++|++++|.+++. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4455555555554421 111223455566666666655432 12345556677777777766542 2233
Q ss_pred ccCCCCCCeeecCCceeeccCcccccCCC-----CCCEEE--cccCccc
Q 038407 205 LGNLSMLQHIILPENHFEGPIPMEFCQLD-----SLQILN--ISDNNIS 246 (528)
Q Consensus 205 l~~l~~L~~L~L~~n~i~~~~~~~l~~l~-----~L~~L~--L~~n~l~ 246 (528)
+...++|++|+|++|.+++.....+..+. .|+.+. +..+.+.
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 44556777777777777654443333221 155555 5555443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=8e-14 Score=135.67 Aligned_cols=161 Identities=20% Similarity=0.162 Sum_probs=109.0
Q ss_pred CCCCceeeccCCcCcccCCccccC-----CCCCCEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccC----
Q 038407 88 LPSLKYFNISMNAFDSSIPTSFGN-----MNFLISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRN---- 158 (528)
Q Consensus 88 l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---- 158 (528)
.++|++|++++|.++......+.. .++|++|++++|.++......+...+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 457778888887776433333222 25788888888877643333444445678888888888865333333
Q ss_pred -CCCCCCCEEEccCCcCCcc-----CcccCCCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeecc----
Q 038407 159 -FNLTNLRRLQLDGNHFREI-----LESLSKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEGP---- 224 (528)
Q Consensus 159 -~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~---- 224 (528)
...++|++|++++|.++.. ...+..+++|++|++++|.+.+. ++..+...++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2467899999999988653 22456778899999999888643 244566777888888888888753
Q ss_pred CcccccCCCCCCEEEcccCccccc
Q 038407 225 IPMEFCQLDSLQILNISDNNISGI 248 (528)
Q Consensus 225 ~~~~l~~l~~L~~L~L~~n~l~~~ 248 (528)
+...+...++|++|++++|.+++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 233455668888888888887654
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.27 E-value=1.2e-09 Score=107.21 Aligned_cols=304 Identities=10% Similarity=0.076 Sum_probs=178.0
Q ss_pred hhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCC
Q 038407 36 LENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFL 115 (528)
Q Consensus 36 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 115 (528)
+....+|+.+.+.. .++.....+|.+|.+|+.+++..+ ++ .++...+..+ +|+.+.+..+ ++.+...+|... +|
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 34455566666643 344444556666666666666433 44 4555555544 5555555432 333444445443 56
Q ss_pred CEEEccCCcccccCChhhhhCCCCCCEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCcc-------------CcccC
Q 038407 116 ISLDLSNNQLTGEIPEHLAMGCVDLEYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREI-------------LESLS 182 (528)
Q Consensus 116 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------~~~~~ 182 (528)
+.+++..+ +. .+....|.++ +++.+.+..+ ++......+..+.+++...+..+..... ...+.
T Consensus 116 ~~i~lp~~-~~-~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 116 DDFEFPGA-TT-EIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp SEEECCTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred ccccCCCc-cc-cccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 66666543 33 3444444333 4555544432 2223344455666666666554432211 11345
Q ss_pred CCCCCCEEEccCCccCccCCccccCCCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhcccccee
Q 038407 183 KCSSLEGLYLSDNNLSGKIPRWLGNLSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQL 262 (528)
Q Consensus 183 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 262 (528)
.+..+..+.+..... ......+..+..|+.+.+..+ +..+...+|.++..|+.+.+..+ ++.+
T Consensus 192 ~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I-------------- 254 (379)
T 4h09_A 192 AAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSI-------------- 254 (379)
T ss_dssp TTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEE--------------
T ss_pred cccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEe--------------
Confidence 556666666655432 244556777788888888655 33355667888888888887654 3322
Q ss_pred eeccCcccccCcccccCCCCCCEEEccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceee
Q 038407 263 VLAHNNFEGEVPIQLCQLNKLQLIDLSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKF 342 (528)
Q Consensus 263 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (528)
-..+|..+.+|+.+++..+ +.......+..
T Consensus 255 ----------~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~--------------------------------------- 284 (379)
T 4h09_A 255 ----------GSFLLQNCTALKTLNFYAK-VKTVPYLLCSG--------------------------------------- 284 (379)
T ss_dssp ----------CTTTTTTCTTCCEEEECCC-CSEECTTTTTT---------------------------------------
T ss_pred ----------Cccccceeehhcccccccc-ceecccccccc---------------------------------------
Confidence 2245677777888777543 22111112211
Q ss_pred eeccccccccccccCcccEEECCCCcCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCc
Q 038407 343 TTKNIAYTYRGRVISYLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIP 422 (528)
Q Consensus 343 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 422 (528)
+.+|+.+++.++.++.+...+|.++.+|+.++|..+ ++.+...+|.++++|+++.+..+ ++.+..
T Consensus 285 -------------c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~ 349 (379)
T 4h09_A 285 -------------CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIES 349 (379)
T ss_dssp -------------CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred -------------ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEch
Confidence 447888888877777666778889999999999754 66566778999999999998765 666677
Q ss_pred cccccCCCC
Q 038407 423 LQLVELNTL 431 (528)
Q Consensus 423 ~~~~~l~~L 431 (528)
.+|.+++.+
T Consensus 350 ~aF~~c~~~ 358 (379)
T 4h09_A 350 GAFEGSSIT 358 (379)
T ss_dssp TTTTTSSCC
T ss_pred hHhhCCCCC
Confidence 778776543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.20 E-value=4.8e-09 Score=102.75 Aligned_cols=298 Identities=12% Similarity=0.079 Sum_probs=171.5
Q ss_pred cCCCCCCEEEccCCcCccccChhhhhcCCCCceeeccCCcCcccCCccccCCCCCCEEEccCCcccccCChhhhhCCCCC
Q 038407 61 HCHKSLMLLDVSNNNLQGHIPVKIGDFLPSLKYFNISMNAFDSSIPTSFGNMNFLISLDLSNNQLTGEIPEHLAMGCVDL 140 (528)
Q Consensus 61 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 140 (528)
....+|+.+.+.. .++ .|+...|..+.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +. .+....|.. .+|
T Consensus 43 ~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~L 115 (379)
T 4h09_A 43 KDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CCC
T ss_pred ccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CCc
Confidence 3445667776653 344 566666666677777777543 555556666665 5666666433 44 555555543 367
Q ss_pred CEEEccCCcCcccCCccCCCCCCCCEEEccCCcCCccCc-ccCCCCCCCEEEccCCccCcc------------CCccccC
Q 038407 141 EYLLLSNNSLEGHLFPRNFNLTNLRRLQLDGNHFREILE-SLSKCSSLEGLYLSDNNLSGK------------IPRWLGN 207 (528)
Q Consensus 141 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~L~~n~l~~~------------~~~~l~~ 207 (528)
+.+.+..+-.. .....|.+ .+++.+.+..+ +..+.. .+..+..++.+.+..+..... ....+..
T Consensus 116 ~~i~lp~~~~~-i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 116 DDFEFPGATTE-IGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp SEEECCTTCCE-ECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccccCCCcccc-cccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 77776554221 22223333 24555554433 222322 555666666665554322110 0111122
Q ss_pred CCCCCeeecCCceeeccCcccccCCCCCCEEEcccCcccccccchhhhccccceeeeccCcccccCcccccCCCCCCEEE
Q 038407 208 LSMLQHIILPENHFEGPIPMEFCQLDSLQILNISDNNISGIYHHASILSLSKDQLVLAHNNFEGEVPIQLCQLNKLQLID 287 (528)
Q Consensus 208 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 287 (528)
...+..+.+...... .....+..+.+|+.+.+.. + +......++..+..|+.+.
T Consensus 193 ~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~------------------------~-~~~i~~~~f~~~~~L~~i~ 246 (379)
T 4h09_A 193 AKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITS------------------------G-VTTLGDGAFYGMKALDEIA 246 (379)
T ss_dssp TCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCT------------------------T-CCEECTTTTTTCSSCCEEE
T ss_pred cccccccccccceeE-Eeecccccccccceeeecc------------------------c-eeEEccccccCCccceEEE
Confidence 222333322221111 2222333334444443322 1 2223446788899999999
Q ss_pred ccCCcCCcCCCCCCcCCccccccccCCCCCCCCccccccccccccccccccceeeeeccccccccccccCcccEEECCCC
Q 038407 288 LSNNILSGHIPPCLDNTTLHESYIDTSSPESSETSFVDEGFAFYKEKKIQETFKFTTKNIAYTYRGRVISYLSELDLSYN 367 (528)
Q Consensus 288 ls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 367 (528)
+..+ ++.....++.. +.+|+.+.+..+
T Consensus 247 lp~~-v~~I~~~aF~~----------------------------------------------------~~~l~~i~l~~~ 273 (379)
T 4h09_A 247 IPKN-VTSIGSFLLQN----------------------------------------------------CTALKTLNFYAK 273 (379)
T ss_dssp ECTT-CCEECTTTTTT----------------------------------------------------CTTCCEEEECCC
T ss_pred cCCC-ccEeCccccce----------------------------------------------------eehhcccccccc
Confidence 8765 33222222222 346888888644
Q ss_pred cCccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEccCCCCccCCCC
Q 038407 368 KLIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVAHNNLSGKIPE 447 (528)
Q Consensus 368 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~ 447 (528)
+......+|.++++|+.+++.++.++.+...+|.++.+|+.++|.++ ++.+...+|.++++|+.+.+..+ ++..-..
T Consensus 274 -i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~ 350 (379)
T 4h09_A 274 -VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESG 350 (379)
T ss_dssp -CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred -ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchh
Confidence 55456678999999999999999999888889999999999999865 77677889999999999998655 5544444
Q ss_pred CCc
Q 038407 448 WTA 450 (528)
Q Consensus 448 ~~~ 450 (528)
++.
T Consensus 351 aF~ 353 (379)
T 4h09_A 351 AFE 353 (379)
T ss_dssp TTT
T ss_pred Hhh
Confidence 443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=2.6e-09 Score=102.96 Aligned_cols=85 Identities=12% Similarity=0.039 Sum_probs=43.8
Q ss_pred hhhhCCCCCCEEEccCCcCc---------ccCChhhhhcCCCCCEEEccCCCCccccCcCccCCCCCCEEEccCCcCccc
Q 038407 9 NFFYHQHDLEFVRLSHLNLN---------GEFPNWLLENNTKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNNLQGH 79 (528)
Q Consensus 9 ~~l~~~~~L~~L~Ls~~~~~---------~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 79 (528)
++...+++|+.|.+...... +.+. .++..+|+|+.|+|++|.-. ..+. +. +++|++|++..+.+...
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDS 208 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChH
Confidence 34455677777776543221 1122 33466677777777665211 1121 22 56677777766665532
Q ss_pred cChhhhh-cCCCCceeecc
Q 038407 80 IPVKIGD-FLPSLKYFNIS 97 (528)
Q Consensus 80 ~~~~~~~-~l~~L~~L~L~ 97 (528)
....+.. .+|+|++|+|+
T Consensus 209 ~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHHHccCCCCcEEEEe
Confidence 2222321 25667776664
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=2.1e-09 Score=103.63 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=36.3
Q ss_pred CCCCCCEEEccCCccCccCCcccc---CCCCCCeeecCCceeeccC----cccccCCCCCCEEEcccCcccc
Q 038407 183 KCSSLEGLYLSDNNLSGKIPRWLG---NLSMLQHIILPENHFEGPI----PMEFCQLDSLQILNISDNNISG 247 (528)
Q Consensus 183 ~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~L~~n~l~~ 247 (528)
.+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 356666666666655432222222 3566777777777666432 2223345677777777776653
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=6.5e-09 Score=90.37 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=57.2
Q ss_pred hhcCCCCCEEEccCC-CCccc----cCcCccCCCCCCEEEccCCcCccccChhhhh---cCCCCceeeccCCcCccc---
Q 038407 36 LENNTKLESNFLLNN-SLPGL----FLLPIHCHKSLMLLDVSNNNLQGHIPVKIGD---FLPSLKYFNISMNAFDSS--- 104 (528)
Q Consensus 36 ~~~l~~L~~L~L~~n-~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~---~l~~L~~L~L~~n~i~~~--- 104 (528)
+...+.|++|+|++| .+... +...+...++|++|+|++|.+.......+.. ..++|++|+|++|.|...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344555555555555 44432 2233344455666666666554321111111 134566666666666532
Q ss_pred -CCccccCCCCCCEEEc--cCCcccccC----ChhhhhCCCCCCEEEccCCcCc
Q 038407 105 -IPTSFGNMNFLISLDL--SNNQLTGEI----PEHLAMGCVDLEYLLLSNNSLE 151 (528)
Q Consensus 105 -~~~~~~~l~~L~~L~l--~~n~l~~~~----~~~~~~~l~~L~~L~l~~n~l~ 151 (528)
+...+...+.|++|++ ++|.+.... ...+ ...+.|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L-~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH-HhCCCcCEEeccCCCCC
Confidence 2334455566777777 566665321 1122 23466777777777654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=7.7e-08 Score=83.50 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=71.0
Q ss_pred cCchhhhCCCCCCEEEccCC-cCcccCCh---hhhhcCCCCCEEEccCCCCccc----cCcCccCCCCCCEEEccCCcCc
Q 038407 6 HSPNFFYHQHDLEFVRLSHL-NLNGEFPN---WLLENNTKLESNFLLNNSLPGL----FLLPIHCHKSLMLLDVSNNNLQ 77 (528)
Q Consensus 6 ~~~~~l~~~~~L~~L~Ls~~-~~~~~~~~---~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l~ 77 (528)
.+...+...++|++|+|++| .+...-.. ..+...++|++|+|++|.+... +...+...+.|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34455666777777777777 66532111 1135567777777777777543 2333445567777777777776
Q ss_pred cccChhhhh---cCCCCceeec--cCCcCccc----CCccccCCCCCCEEEccCCccc
Q 038407 78 GHIPVKIGD---FLPSLKYFNI--SMNAFDSS----IPTSFGNMNFLISLDLSNNQLT 126 (528)
Q Consensus 78 ~~~~~~~~~---~l~~L~~L~L--~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~ 126 (528)
+.-...+.. ..++|++|++ ++|.+... +...+...+.|++|++++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 432111221 2456777777 66777643 2234445567777777777664
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=3.4e-08 Score=90.16 Aligned_cols=96 Identities=22% Similarity=0.295 Sum_probs=63.5
Q ss_pred EECCCCcCc---cCCChhhhccccCCEEeCCCccccc--cCCccccCCCCCCeeeCcCCcCcccCccccccCC--CCCEE
Q 038407 362 LDLSYNKLI---GQIPPQIGNLTRIQTLNLSYNNLTG--SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELN--TLAVF 434 (528)
Q Consensus 362 L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L 434 (528)
++++.|... ...+.....+++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 556666432 1112223567888888888888886 3456667888888888888888865 2344444 88888
Q ss_pred EccCCCCccCCCC-------CCcccCCCCcCc
Q 038407 435 NVAHNNLSGKIPE-------WTAQFATFNESS 459 (528)
Q Consensus 435 ~ls~N~l~~~~p~-------~~~~~~~l~~l~ 459 (528)
++++|++.+..|. .+..+++|+.|+
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 8888888876653 234566666553
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=3.3e-07 Score=83.57 Aligned_cols=78 Identities=24% Similarity=0.295 Sum_probs=64.8
Q ss_pred cCcccEEECCCCcCcc--CCChhhhccccCCEEeCCCccccccCCccccCCC--CCCeeeCcCCcCcccCc-------cc
Q 038407 356 ISYLSELDLSYNKLIG--QIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLK--HIKSLDLSYNKLDGKIP-------LQ 424 (528)
Q Consensus 356 ~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~-------~~ 424 (528)
+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|.+.+..| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 6789999999999997 3457788999999999999999965 3344444 99999999999987555 34
Q ss_pred cccCCCCCEEE
Q 038407 425 LVELNTLAVFN 435 (528)
Q Consensus 425 ~~~l~~L~~L~ 435 (528)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 67899999987
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.25 E-value=9.5e-07 Score=71.30 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=44.0
Q ss_pred eeeCcCCcCc-ccCccccccCCCCCEEEccCCCCccCCCCCCcccCCCCcCcccCCCCCCCCCC
Q 038407 409 SLDLSYNKLD-GKIPLQLVELNTLAVFNVAHNNLSGKIPEWTAQFATFNESSYEGNPFLCGLPL 471 (528)
Q Consensus 409 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~l~l~~Np~~c~~~l 471 (528)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..+..+++|+.+++.+|||.|+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 6677777775 23453322 3577888888888766666677778888888999999999865
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=2.7e-07 Score=77.98 Aligned_cols=84 Identities=11% Similarity=0.121 Sum_probs=67.0
Q ss_pred cccEEECCCCcCccCCChhhhccccCCEEeCCCcc-ccccCCccccCC----CCCCeeeCcCCc-CcccCccccccCCCC
Q 038407 358 YLSELDLSYNKLIGQIPPQIGNLTRIQTLNLSYNN-LTGSIPSTFSNL----KHIKSLDLSYNK-LDGKIPLQLVELNTL 431 (528)
Q Consensus 358 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 431 (528)
.|++||+++|.++..--..+.++++|+.|+|++|. +++.--..+..+ ++|++|+|++|. |+...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 69999999999886655667889999999999995 765433445554 479999999985 886666677889999
Q ss_pred CEEEccCCCC
Q 038407 432 AVFNVAHNNL 441 (528)
Q Consensus 432 ~~L~ls~N~l 441 (528)
++|++++|.-
T Consensus 142 ~~L~L~~c~~ 151 (176)
T 3e4g_A 142 KYLFLSDLPG 151 (176)
T ss_dssp CEEEEESCTT
T ss_pred CEEECCCCCC
Confidence 9999999863
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=5.3e-07 Score=76.12 Aligned_cols=85 Identities=8% Similarity=0.013 Sum_probs=57.7
Q ss_pred CCCCEEEccCCCCccccCcCccCCCCCCEEEccCCc-CccccChhhhhc---CCCCceeeccCCc-CcccCCccccCCCC
Q 038407 40 TKLESNFLLNNSLPGLFLLPIHCHKSLMLLDVSNNN-LQGHIPVKIGDF---LPSLKYFNISMNA-FDSSIPTSFGNMNF 114 (528)
Q Consensus 40 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~---l~~L~~L~L~~n~-i~~~~~~~~~~l~~ 114 (528)
.+|++||+++|.++...-..+.++++|++|+|++|. +++.--..+... .++|++|++++|. |++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467888888888777666667788888888888874 664332333331 2468888888874 66544455667778
Q ss_pred CCEEEccCCc
Q 038407 115 LISLDLSNNQ 124 (528)
Q Consensus 115 L~~L~l~~n~ 124 (528)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888887775
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=6.1e-05 Score=64.82 Aligned_cols=113 Identities=14% Similarity=0.129 Sum_probs=50.4
Q ss_pred hcCCCCCEEEccCC-CCccc----cCcCccCCCCCCEEEccCCcCccccChhhhh---cCCCCceeeccCCcCccc----
Q 038407 37 ENNTKLESNFLLNN-SLPGL----FLLPIHCHKSLMLLDVSNNNLQGHIPVKIGD---FLPSLKYFNISMNAFDSS---- 104 (528)
Q Consensus 37 ~~l~~L~~L~L~~n-~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~---~l~~L~~L~L~~n~i~~~---- 104 (528)
.+-+.|++|+|++| .+... +.+++..-+.|+.|+|++|.+.+.....+.. .-+.|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33445555555543 44321 2233444455555555555554222111111 134566666666655432
Q ss_pred CCccccCCCCCCEEEccCCcc---ccc----CChhhhhCCCCCCEEEccCCcC
Q 038407 105 IPTSFGNMNFLISLDLSNNQL---TGE----IPEHLAMGCVDLEYLLLSNNSL 150 (528)
Q Consensus 105 ~~~~~~~l~~L~~L~l~~n~l---~~~----~~~~~~~~l~~L~~L~l~~n~l 150 (528)
+...+..-+.|++|+++++.. ... +...+ ..-+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCCc
Confidence 112333344566666654422 211 11122 2345667777765543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.16 E-value=0.00082 Score=53.90 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=29.5
Q ss_pred EEECCCCcCc-cCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcCCcC
Q 038407 361 ELDLSYNKLI-GQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSYNKL 417 (528)
Q Consensus 361 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 417 (528)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666654 23343221 2456666666666655555555555666666665554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.11 E-value=0.00015 Score=62.32 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=34.0
Q ss_pred ccCCCCCCCEEEccCCccCcc----CCccccCCCCCCeeecCCceeecc----CcccccCCCCCCEEEcccC
Q 038407 180 SLSKCSSLEGLYLSDNNLSGK----IPRWLGNLSMLQHIILPENHFEGP----IPMEFCQLDSLQILNISDN 243 (528)
Q Consensus 180 ~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n 243 (528)
.+..-..|+.|+|++|.+.+. +.+.+..-+.|++|+|++|.|.+. +..++..-+.|++|+|++|
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344445566666666655432 222333445666666666666533 2233444556777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.70 E-value=10 Score=28.00 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=18.1
Q ss_pred cCCccccCCCCCCeeeCcCCcCcccCccccccCCCCCEEEcc
Q 038407 396 SIPSTFSNLKHIKSLDLSYNKLDGKIPLQLVELNTLAVFNVA 437 (528)
Q Consensus 396 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls 437 (528)
+-..+|.++++|+++.+-.+ ++.+...+|.++.+|+.+.+.
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 33344444444444444433 222334444444444444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=65.50 E-value=8.1 Score=28.60 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=22.5
Q ss_pred CccCCChhhhccccCCEEeCCCccccccCCccccCCCCCCeeeCcC
Q 038407 369 LIGQIPPQIGNLTRIQTLNLSYNNLTGSIPSTFSNLKHIKSLDLSY 414 (528)
Q Consensus 369 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 414 (528)
++.+-..+|.++.+|+.+.|..+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33334445555555555555543 2324444555555555555543
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.03 E-value=31 Score=20.17 Aligned_cols=11 Identities=0% Similarity=0.205 Sum_probs=4.5
Q ss_pred hhhhhhhhHHH
Q 038407 504 YISFTISYIIV 514 (528)
Q Consensus 504 ~~~~~~~~~~~ 514 (528)
+++..++.+++
T Consensus 13 IAGiVvG~v~g 23 (38)
T 2k1k_A 13 IVAVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeeeehHHHHH
Confidence 34444444433
Done!