BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038409
         (143 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2REM|A Chain A, Crystal Structure Of Oxidoreductase Dsba From Xylella
           Fastidiosa
 pdb|2REM|B Chain B, Crystal Structure Of Oxidoreductase Dsba From Xylella
           Fastidiosa
 pdb|2REM|C Chain C, Crystal Structure Of Oxidoreductase Dsba From Xylella
           Fastidiosa
          Length = 193

 Score = 31.6 bits (70), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 19/100 (19%)

Query: 47  VELQPGLVLTALSGQIYIGEIMNFREYPFLARNDG---------------TADPRRFRGH 91
           VE+  G     L+G+I + EI  +   P  A  D                T  P  F G 
Sbjct: 12  VEIPDGRPFAPLAGKIEVVEIFGY-TCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGV 70

Query: 92  WETAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIR 131
           W+    A+ Y+A+ ++ G       +M E+IHE GSV I+
Sbjct: 71  WDP--FARAYLAADVL-GVAKRSHTAMFEAIHEKGSVPIQ 107


>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
           Resolution
 pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
           Resolution
          Length = 1661

 Score = 30.0 bits (66), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 41  HLAMPQVELQPGLVLTA-LSGQIYIGEIMNFREYPFLARNDGT--ADPRRFRGHWETAGV 97
           HL++P+VEL+PG  L      +   GE    R Y ++  N G      R++R   +   V
Sbjct: 455 HLSVPRVELKPGETLNVNFHLRTDPGEQAKIRYYTYMIMNKGKLLKVGRQYREPGQDLVV 514

Query: 98  AKVYIASKLVAGYNNMLLYSMIES 121
             + I S  +  +  +  Y++I +
Sbjct: 515 LPLTITSDFIPSFRLVAYYTLINA 538


>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
           Cgd5_820
 pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
           Cgd5_820
          Length = 214

 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 72  EYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIR 131
           E P LA  +   + R+F+   + A  A +Y+ASKL +      L  +   I +NG   + 
Sbjct: 24  ELPSLA--NAIENMRKFQNSQKLAQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLD 81

Query: 132 IQRVI 136
            Q +I
Sbjct: 82  RQELI 86


>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
           Solenoid With A Hydrophobic Amino-terminal Pocket
          Length = 310

 Score = 27.7 bits (60), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 9/56 (16%)

Query: 74  PFLARNDGTADPRRF-------RGHWETAGVAKVYIASKLVAGYNNMLLYSMIESI 122
           PFL R D  ADPR++       R    T G A+V   ++L+ G   +L YS ++ +
Sbjct: 43  PFLKRVDADADPRQYADTVKALRVRRLTVGAAQV--PAQLLVGALRVLAYSRLKEL 96


>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
           Complex With Ca2+ And Amppnp
          Length = 494

 Score = 26.9 bits (58), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 72  EYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIR 131
           E P LA  +   + R+F+   + A  A +Y+ASKL +      L  +   I +NG   + 
Sbjct: 307 ELPSLA--NAIENMRKFQNSQKLAQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLD 364

Query: 132 IQRVI 136
            Q +I
Sbjct: 365 RQELI 369


>pdb|1VCT|A Chain A, Crystal Structure Of Putative Potassium Channel Related
           Protein From Pyrococcus Horikoshii
 pdb|2BKN|A Chain A, Structure Analysis Of Unknown Function Protein
 pdb|2BKO|A Chain A, Structure Analysis Of Unknown Function Protein
 pdb|2BKP|A Chain A, Structure Analysis Of Unknown Function Protein
          Length = 205

 Score = 25.8 bits (55), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 40  THLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFLARNDGTADPRRFRGHW 92
             + +  VEL P +  T L G+  IG+I  + E   + +  G  D     G W
Sbjct: 99  AKMVLEGVELHPVIKETILEGEEIIGKIQVYPESVIVGKTLGELDLATNTGVW 151


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,546,408
Number of Sequences: 62578
Number of extensions: 124018
Number of successful extensions: 295
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 6
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)