Query 038409
Match_columns 143
No_of_seqs 168 out of 1902
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:44:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02172 flavin-containing mon 99.8 1.7E-19 3.7E-24 139.3 11.5 76 2-77 10-95 (461)
2 KOG1399 Flavin-containing mono 99.7 4E-18 8.6E-23 130.6 6.7 127 1-142 5-146 (448)
3 PF00743 FMO-like: Flavin-bind 99.7 1.5E-17 3.2E-22 130.4 4.2 127 2-142 1-143 (531)
4 PRK05868 hypothetical protein; 99.5 8.7E-14 1.9E-18 105.2 10.0 133 2-142 1-153 (372)
5 PRK08163 salicylate hydroxylas 99.5 1.3E-13 2.8E-18 104.6 9.0 135 2-142 4-159 (396)
6 PRK07588 hypothetical protein; 99.5 1.9E-13 4.2E-18 103.7 9.2 133 3-142 1-151 (391)
7 COG2081 Predicted flavoprotein 99.5 1.2E-14 2.6E-19 108.4 1.4 140 1-143 2-161 (408)
8 PRK06475 salicylate hydroxylas 99.5 3.5E-13 7.6E-18 102.7 8.7 58 1-58 1-63 (400)
9 PRK06753 hypothetical protein; 99.4 1.4E-13 3E-18 103.7 5.8 134 3-142 1-145 (373)
10 PRK07236 hypothetical protein; 99.4 2.2E-13 4.7E-18 103.4 6.5 133 2-142 6-147 (386)
11 TIGR03219 salicylate_mono sali 99.4 3.1E-12 6.8E-17 97.8 9.2 53 3-55 1-59 (414)
12 PRK06847 hypothetical protein; 99.4 1.9E-12 4E-17 97.6 7.6 35 2-36 4-38 (375)
13 COG0654 UbiH 2-polyprenyl-6-me 99.4 5.5E-12 1.2E-16 95.8 10.2 128 1-142 1-155 (387)
14 PRK07538 hypothetical protein; 99.4 5.2E-12 1.1E-16 96.6 9.7 54 3-56 1-59 (413)
15 COG2072 TrkA Predicted flavopr 99.4 2.2E-12 4.8E-17 99.6 7.4 65 2-76 8-73 (443)
16 PRK07364 2-octaprenyl-6-methox 99.3 1.9E-11 4.1E-16 93.4 10.7 56 2-57 18-80 (415)
17 TIGR01988 Ubi-OHases Ubiquinon 99.3 2.6E-11 5.6E-16 91.5 10.6 34 4-37 1-34 (385)
18 PRK09126 hypothetical protein; 99.3 7.8E-12 1.7E-16 94.8 7.6 36 1-36 2-37 (392)
19 PRK08849 2-octaprenyl-3-methyl 99.3 3.1E-11 6.8E-16 91.5 10.4 33 3-35 4-36 (384)
20 PRK07045 putative monooxygenas 99.3 2E-11 4.4E-16 92.6 9.1 35 3-37 6-40 (388)
21 TIGR02360 pbenz_hydroxyl 4-hyd 99.3 1.5E-11 3.2E-16 93.6 8.3 36 1-36 1-36 (390)
22 PF13738 Pyr_redox_3: Pyridine 99.3 5.3E-13 1.2E-17 92.5 0.3 38 6-43 1-39 (203)
23 PRK08243 4-hydroxybenzoate 3-m 99.3 3.8E-11 8.3E-16 91.3 9.4 36 1-36 1-36 (392)
24 PF03486 HI0933_like: HI0933-l 99.3 8E-13 1.7E-17 100.9 0.2 138 3-143 1-160 (409)
25 PLN02927 antheraxanthin epoxid 99.3 3.2E-11 6.9E-16 96.7 8.9 34 2-35 81-114 (668)
26 PRK08244 hypothetical protein; 99.3 1E-11 2.2E-16 97.1 5.9 57 1-57 1-62 (493)
27 PRK08013 oxidoreductase; Provi 99.2 9.5E-11 2E-15 89.4 10.8 34 3-36 4-37 (400)
28 PRK07333 2-octaprenyl-6-methox 99.2 7.2E-11 1.6E-15 89.8 10.1 35 2-36 1-37 (403)
29 PRK05714 2-octaprenyl-3-methyl 99.2 3.5E-11 7.5E-16 91.8 8.3 35 1-35 1-35 (405)
30 TIGR01984 UbiH 2-polyprenyl-6- 99.2 9.9E-11 2.1E-15 88.5 9.8 33 4-36 1-34 (382)
31 PF13450 NAD_binding_8: NAD(P) 99.2 1.7E-11 3.7E-16 71.1 4.3 36 7-42 1-36 (68)
32 PRK06617 2-octaprenyl-6-methox 99.2 9E-11 2E-15 88.8 9.3 34 2-35 1-34 (374)
33 PRK08850 2-octaprenyl-6-methox 99.2 1.5E-10 3.2E-15 88.4 9.5 32 3-34 5-36 (405)
34 PRK07608 ubiquinone biosynthes 99.2 3E-10 6.4E-15 86.0 10.2 37 1-37 4-40 (388)
35 KOG2614 Kynurenine 3-monooxyge 99.2 2.6E-11 5.6E-16 91.0 4.2 37 1-37 1-37 (420)
36 PF01494 FAD_binding_3: FAD bi 99.2 4.8E-11 1E-15 88.6 5.4 34 3-36 2-35 (356)
37 PRK06183 mhpA 3-(3-hydroxyphen 99.1 2.8E-10 6E-15 90.0 8.6 36 2-37 10-45 (538)
38 PRK08773 2-octaprenyl-3-methyl 99.1 6.9E-10 1.5E-14 84.3 10.2 34 3-36 7-40 (392)
39 PRK05732 2-octaprenyl-6-methox 99.1 2.2E-10 4.8E-15 86.9 7.5 33 2-34 3-38 (395)
40 PRK06184 hypothetical protein; 99.1 8.3E-11 1.8E-15 92.2 5.2 35 3-37 4-38 (502)
41 KOG0029 Amine oxidase [Seconda 99.1 1.3E-10 2.9E-15 90.7 5.7 41 2-42 15-55 (501)
42 PRK06834 hypothetical protein; 99.1 1.7E-10 3.7E-15 90.2 5.7 34 3-36 4-37 (488)
43 PRK07494 2-octaprenyl-6-methox 99.1 2E-10 4.3E-15 87.1 5.9 34 4-37 9-42 (388)
44 TIGR01789 lycopene_cycl lycope 99.1 9.5E-10 2.1E-14 83.3 9.2 36 4-39 1-38 (370)
45 PRK11883 protoporphyrinogen ox 99.1 2.6E-10 5.6E-15 87.8 5.6 40 3-42 1-42 (451)
46 PRK08020 ubiF 2-octaprenyl-3-m 99.0 1.8E-09 4E-14 81.9 9.7 35 2-36 5-39 (391)
47 PRK06126 hypothetical protein; 99.0 1.6E-09 3.5E-14 85.7 8.6 34 3-36 8-41 (545)
48 PRK08132 FAD-dependent oxidore 99.0 2.7E-09 5.8E-14 84.6 9.2 36 2-37 23-58 (547)
49 TIGR01292 TRX_reduct thioredox 99.0 7.6E-10 1.6E-14 80.7 5.6 39 3-42 1-39 (300)
50 TIGR01989 COQ6 Ubiquinone bios 99.0 4.4E-09 9.5E-14 81.2 10.0 32 4-35 2-37 (437)
51 PLN02268 probable polyamine ox 99.0 7.3E-10 1.6E-14 85.3 5.7 40 3-42 1-40 (435)
52 PRK07208 hypothetical protein; 99.0 7.9E-10 1.7E-14 86.1 5.8 41 2-42 4-44 (479)
53 COG3349 Uncharacterized conser 99.0 7E-10 1.5E-14 85.5 5.1 40 3-42 1-40 (485)
54 COG1233 Phytoene dehydrogenase 99.0 9.6E-10 2.1E-14 86.0 5.9 40 2-41 3-42 (487)
55 COG1635 THI4 Ribulose 1,5-bisp 99.0 7.6E-10 1.6E-14 77.2 4.5 40 3-42 31-71 (262)
56 PRK06185 hypothetical protein; 99.0 3.7E-09 8.1E-14 80.6 8.5 35 2-36 6-40 (407)
57 PRK12416 protoporphyrinogen ox 99.0 1.2E-09 2.5E-14 84.8 5.6 41 2-42 1-47 (463)
58 PRK12779 putative bifunctional 98.9 1.4E-09 3.1E-14 90.6 6.3 43 2-44 306-348 (944)
59 PRK07233 hypothetical protein; 98.9 1.3E-09 2.7E-14 83.6 5.5 38 4-41 1-38 (434)
60 TIGR00562 proto_IX_ox protopor 98.9 1.4E-09 3.1E-14 84.2 5.7 41 2-42 2-46 (462)
61 PRK08294 phenol 2-monooxygenas 98.9 1.4E-09 3.1E-14 87.4 5.6 56 3-58 33-94 (634)
62 PRK07190 hypothetical protein; 98.9 1E-08 2.2E-13 80.3 9.2 35 3-37 6-40 (487)
63 PLN02576 protoporphyrinogen ox 98.9 2.5E-09 5.3E-14 83.7 5.5 40 3-42 13-53 (496)
64 COG3380 Predicted NAD/FAD-depe 98.9 3.3E-09 7.2E-14 76.1 5.2 40 3-42 2-41 (331)
65 PLN02852 ferredoxin-NADP+ redu 98.9 4.2E-09 9.1E-14 82.2 6.2 43 2-44 26-70 (491)
66 COG1232 HemY Protoporphyrinoge 98.9 3.9E-09 8.4E-14 81.2 5.4 40 3-42 1-42 (444)
67 PRK06996 hypothetical protein; 98.9 4E-08 8.6E-13 75.0 10.7 35 2-36 11-49 (398)
68 TIGR02733 desat_CrtD C-3',4' d 98.8 4.4E-09 9.4E-14 82.3 5.4 38 3-40 2-39 (492)
69 TIGR02734 crtI_fam phytoene de 98.8 3.8E-09 8.2E-14 82.8 4.9 38 5-42 1-38 (502)
70 PRK12831 putative oxidoreducta 98.8 8.5E-09 1.8E-13 80.3 6.2 43 2-44 140-182 (464)
71 PF05834 Lycopene_cycl: Lycope 98.8 5.5E-08 1.2E-12 73.8 10.4 34 4-37 1-36 (374)
72 COG0644 FixC Dehydrogenases (f 98.8 6.3E-09 1.4E-13 79.4 5.2 39 1-39 2-40 (396)
73 TIGR02731 phytoene_desat phyto 98.8 6.1E-09 1.3E-13 80.7 5.0 38 4-41 1-38 (453)
74 PRK12769 putative oxidoreducta 98.8 9.7E-09 2.1E-13 83.0 6.2 43 2-44 327-369 (654)
75 PTZ00188 adrenodoxin reductase 98.8 1.1E-08 2.4E-13 79.5 6.2 43 2-44 39-82 (506)
76 PF01946 Thi4: Thi4 family; PD 98.8 5.1E-09 1.1E-13 73.1 3.9 40 3-42 18-58 (230)
77 TIGR03315 Se_ygfK putative sel 98.8 1.1E-08 2.3E-13 85.5 6.0 42 2-43 537-578 (1012)
78 PLN02568 polyamine oxidase 98.8 1.3E-08 2.9E-13 80.5 5.9 40 3-42 6-50 (539)
79 KOG0399 Glutamate synthase [Am 98.8 1.4E-08 3.1E-13 84.4 5.6 43 2-44 1785-1827(2142)
80 KOG0685 Flavin-containing amin 98.7 1.8E-08 3.9E-13 77.1 5.7 40 3-42 22-62 (498)
81 PRK04176 ribulose-1,5-biphosph 98.7 1.9E-08 4.2E-13 72.7 5.5 38 2-39 25-62 (257)
82 PRK12809 putative oxidoreducta 98.7 1.9E-08 4.1E-13 81.1 6.0 43 2-44 310-352 (639)
83 PRK09853 putative selenate red 98.7 1.8E-08 3.8E-13 84.1 5.8 42 2-43 539-580 (1019)
84 TIGR01316 gltA glutamate synth 98.7 2.7E-08 5.9E-13 77.2 6.1 43 2-44 133-175 (449)
85 TIGR02732 zeta_caro_desat caro 98.7 2.2E-08 4.8E-13 78.2 5.6 38 4-41 1-38 (474)
86 PRK12778 putative bifunctional 98.7 2.8E-08 6E-13 81.6 6.1 43 2-44 431-473 (752)
87 TIGR00292 thiazole biosynthesi 98.7 2.8E-08 6.1E-13 71.7 5.4 40 2-41 21-61 (254)
88 PRK12775 putative trifunctiona 98.7 2.7E-08 5.8E-13 83.7 5.8 42 2-43 430-471 (1006)
89 TIGR00031 UDP-GALP_mutase UDP- 98.7 3.5E-08 7.5E-13 74.9 5.9 41 3-43 2-42 (377)
90 PRK13977 myosin-cross-reactive 98.7 2.6E-08 5.6E-13 78.7 5.2 41 2-42 22-66 (576)
91 TIGR02730 carot_isom carotene 98.7 2.9E-08 6.2E-13 77.8 5.4 39 4-42 2-40 (493)
92 PRK05249 soluble pyridine nucl 98.7 2.9E-08 6.3E-13 77.1 5.3 42 3-44 6-47 (461)
93 PRK12810 gltD glutamate syntha 98.7 4.1E-08 8.9E-13 76.6 6.1 43 2-44 143-185 (471)
94 PLN02487 zeta-carotene desatur 98.7 3.2E-08 6.9E-13 78.7 5.4 39 3-41 76-114 (569)
95 COG1148 HdrA Heterodisulfide r 98.7 3E-08 6.6E-13 76.2 5.0 40 2-41 124-163 (622)
96 PRK12814 putative NADPH-depend 98.7 4.2E-08 9.1E-13 79.3 6.1 43 2-44 193-235 (652)
97 COG0493 GltD NADPH-dependent g 98.7 3.4E-08 7.3E-13 76.6 5.3 44 2-45 123-166 (457)
98 PRK11749 dihydropyrimidine deh 98.7 4.5E-08 9.8E-13 76.1 5.8 42 2-43 140-181 (457)
99 TIGR01318 gltD_gamma_fam gluta 98.7 5.2E-08 1.1E-12 76.0 6.2 43 2-44 141-183 (467)
100 COG1231 Monoamine oxidase [Ami 98.7 4.4E-08 9.5E-13 74.7 5.3 41 2-42 7-47 (450)
101 TIGR02032 GG-red-SF geranylger 98.6 5E-08 1.1E-12 70.9 5.3 35 4-38 2-36 (295)
102 PRK06115 dihydrolipoamide dehy 98.6 5.1E-08 1.1E-12 76.0 5.7 42 3-44 4-45 (466)
103 PRK11728 hydroxyglutarate oxid 98.6 4.7E-08 1E-12 74.5 5.3 38 1-38 1-40 (393)
104 PLN00093 geranylgeranyl diphos 98.6 4.8E-08 1E-12 75.8 5.3 36 1-36 38-73 (450)
105 PF13454 NAD_binding_9: FAD-NA 98.6 4.8E-08 1E-12 65.5 4.6 31 6-36 1-36 (156)
106 PRK12409 D-amino acid dehydrog 98.6 5.5E-08 1.2E-12 74.4 5.5 34 3-36 2-35 (410)
107 PLN02529 lysine-specific histo 98.6 5.5E-08 1.2E-12 79.2 5.6 41 2-42 160-200 (738)
108 PLN02676 polyamine oxidase 98.6 5E-08 1.1E-12 76.4 5.2 41 2-42 26-67 (487)
109 PRK10157 putative oxidoreducta 98.6 6.3E-08 1.4E-12 74.7 5.5 36 3-38 6-41 (428)
110 KOG1276 Protoporphyrinogen oxi 98.6 5.8E-08 1.3E-12 73.6 5.1 42 1-42 10-53 (491)
111 PRK05335 tRNA (uracil-5-)-meth 98.6 6.3E-08 1.4E-12 74.3 5.2 37 1-37 1-37 (436)
112 COG2907 Predicted NAD/FAD-bind 98.6 3.6E-08 7.8E-13 73.1 3.5 39 2-41 8-46 (447)
113 PF01266 DAO: FAD dependent ox 98.6 7.2E-08 1.6E-12 71.6 5.2 31 4-34 1-31 (358)
114 COG4529 Uncharacterized protei 98.6 1.3E-07 2.8E-12 72.7 6.5 46 2-47 1-49 (474)
115 PRK06416 dihydrolipoamide dehy 98.6 8.2E-08 1.8E-12 74.6 5.4 42 2-44 4-45 (462)
116 PLN02328 lysine-specific histo 98.6 7.4E-08 1.6E-12 79.0 5.3 41 2-42 238-278 (808)
117 PRK10015 oxidoreductase; Provi 98.6 9.5E-08 2.1E-12 73.8 5.5 36 3-38 6-41 (429)
118 PRK12771 putative glutamate sy 98.6 1.2E-07 2.7E-12 75.5 6.2 43 2-44 137-179 (564)
119 PRK14727 putative mercuric red 98.6 1.1E-07 2.5E-12 74.3 5.8 43 2-44 16-58 (479)
120 TIGR01350 lipoamide_DH dihydro 98.6 1.2E-07 2.5E-12 73.7 5.7 41 3-44 2-42 (461)
121 PRK08255 salicylyl-CoA 5-hydro 98.6 9E-08 1.9E-12 78.7 5.2 44 3-46 1-49 (765)
122 PRK07251 pyridine nucleotide-d 98.6 1.4E-07 2.9E-12 73.0 5.9 40 3-42 4-44 (438)
123 TIGR02053 MerA mercuric reduct 98.6 1.2E-07 2.5E-12 73.9 5.5 40 3-43 1-40 (463)
124 PRK06116 glutathione reductase 98.6 8.7E-08 1.9E-12 74.3 4.8 40 3-43 5-44 (450)
125 PRK14694 putative mercuric red 98.6 1.1E-07 2.5E-12 74.0 5.5 40 3-43 7-46 (468)
126 PLN02612 phytoene desaturase 98.6 1.1E-07 2.5E-12 75.7 5.5 39 2-40 93-131 (567)
127 COG0665 DadA Glycine/D-amino a 98.6 1.2E-07 2.5E-12 71.8 5.3 36 1-36 3-38 (387)
128 TIGR02028 ChlP geranylgeranyl 98.6 1.1E-07 2.4E-12 72.8 5.1 35 3-37 1-35 (398)
129 PRK06467 dihydrolipoamide dehy 98.5 1.2E-07 2.6E-12 74.0 5.3 42 2-43 4-45 (471)
130 TIGR01424 gluta_reduc_2 glutat 98.5 1.3E-07 2.8E-12 73.3 5.4 40 3-43 3-42 (446)
131 PRK08010 pyridine nucleotide-d 98.5 1.7E-07 3.6E-12 72.5 5.9 41 3-43 4-45 (441)
132 PRK06292 dihydrolipoamide dehy 98.5 1.4E-07 3.1E-12 73.2 5.6 40 3-43 4-43 (460)
133 TIGR01790 carotene-cycl lycope 98.5 1.2E-07 2.6E-12 72.0 5.0 37 4-40 1-37 (388)
134 COG0492 TrxB Thioredoxin reduc 98.5 3.2E-07 6.9E-12 67.9 7.0 38 2-40 3-41 (305)
135 PRK06567 putative bifunctional 98.5 1.2E-07 2.6E-12 78.8 5.2 34 2-35 383-416 (1028)
136 PRK11259 solA N-methyltryptoph 98.5 1.3E-07 2.8E-12 71.3 5.1 35 2-36 3-37 (376)
137 TIGR01421 gluta_reduc_1 glutat 98.5 1.3E-07 2.8E-12 73.5 5.1 40 3-43 3-42 (450)
138 PRK10262 thioredoxin reductase 98.5 1.6E-07 3.5E-12 69.7 5.4 41 2-43 6-46 (321)
139 PRK05976 dihydrolipoamide dehy 98.5 1.6E-07 3.6E-12 73.2 5.6 41 3-44 5-45 (472)
140 PRK00711 D-amino acid dehydrog 98.5 1.5E-07 3.3E-12 71.9 5.3 35 3-37 1-35 (416)
141 TIGR01317 GOGAT_sm_gam glutama 98.5 2.2E-07 4.8E-12 72.8 6.0 43 2-44 143-185 (485)
142 PF12831 FAD_oxidored: FAD dep 98.5 1.4E-07 3E-12 72.9 4.7 39 4-42 1-39 (428)
143 COG0562 Glf UDP-galactopyranos 98.5 1.9E-07 4.2E-12 68.6 5.2 41 2-42 1-41 (374)
144 PRK13748 putative mercuric red 98.5 1.7E-07 3.8E-12 74.4 5.2 41 3-44 99-139 (561)
145 PTZ00367 squalene epoxidase; P 98.5 1.7E-07 3.7E-12 74.6 5.0 33 3-35 34-66 (567)
146 PLN02985 squalene monooxygenas 98.5 2E-07 4.3E-12 73.6 5.3 34 3-36 44-77 (514)
147 PRK06370 mercuric reductase; V 98.5 2.2E-07 4.7E-12 72.3 5.5 41 3-44 6-46 (463)
148 TIGR02023 BchP-ChlP geranylger 98.5 1.7E-07 3.8E-12 71.3 4.8 32 3-34 1-32 (388)
149 PRK11445 putative oxidoreducta 98.5 1.8E-07 3.8E-12 70.4 4.7 34 2-36 1-34 (351)
150 TIGR03143 AhpF_homolog putativ 98.5 2.7E-07 5.9E-12 73.4 5.9 40 3-43 5-44 (555)
151 TIGR00275 flavoprotein, HI0933 98.5 1.5E-07 3.2E-12 72.1 3.9 39 6-44 1-39 (400)
152 PRK12770 putative glutamate sy 98.5 3.9E-07 8.5E-12 68.6 6.0 42 2-43 18-59 (352)
153 TIGR01377 soxA_mon sarcosine o 98.5 2.7E-07 5.9E-12 69.7 5.0 34 3-36 1-34 (380)
154 TIGR01372 soxA sarcosine oxida 98.4 3.8E-07 8.2E-12 76.9 5.7 42 3-44 164-205 (985)
155 PF00890 FAD_binding_2: FAD bi 98.4 3.2E-07 6.9E-12 70.3 4.7 37 4-40 1-37 (417)
156 PRK01747 mnmC bifunctional tRN 98.4 3.8E-07 8.3E-12 73.9 5.2 34 3-36 261-294 (662)
157 PRK06912 acoL dihydrolipoamide 98.4 3.7E-07 8E-12 71.0 5.0 40 3-43 1-40 (458)
158 PF00070 Pyr_redox: Pyridine n 98.4 8.2E-07 1.8E-11 52.8 5.4 33 4-36 1-33 (80)
159 PRK07818 dihydrolipoamide dehy 98.4 4.6E-07 9.9E-12 70.6 5.4 41 3-44 5-45 (466)
160 PLN03000 amine oxidase 98.4 4.1E-07 8.9E-12 75.0 5.3 40 3-42 185-224 (881)
161 TIGR01813 flavo_cyto_c flavocy 98.4 4.3E-07 9.4E-12 70.2 5.1 37 4-40 1-38 (439)
162 TIGR03364 HpnW_proposed FAD de 98.4 5.4E-07 1.2E-11 67.9 5.4 34 3-36 1-34 (365)
163 PRK07845 flavoprotein disulfid 98.4 5.6E-07 1.2E-11 70.2 5.4 42 2-44 1-42 (466)
164 PRK13984 putative oxidoreducta 98.4 7.3E-07 1.6E-11 71.6 6.2 43 2-44 283-325 (604)
165 PRK07121 hypothetical protein; 98.4 6.4E-07 1.4E-11 70.3 5.6 38 3-40 21-58 (492)
166 PRK06481 fumarate reductase fl 98.4 5.9E-07 1.3E-11 70.8 5.3 38 3-40 62-99 (506)
167 PRK08274 tricarballylate dehyd 98.4 6.5E-07 1.4E-11 69.7 5.5 34 3-36 5-38 (466)
168 PLN02976 amine oxidase 98.4 6.1E-07 1.3E-11 77.0 5.6 42 2-43 693-734 (1713)
169 PRK09897 hypothetical protein; 98.4 7.7E-07 1.7E-11 70.4 5.8 44 2-45 1-46 (534)
170 PF00743 FMO-like: Flavin-bind 98.4 1.3E-06 2.7E-11 69.3 6.9 34 2-35 183-216 (531)
171 PRK09754 phenylpropionate diox 98.4 1.4E-06 3.1E-11 66.6 6.9 34 2-35 3-38 (396)
172 PTZ00058 glutathione reductase 98.3 7.5E-07 1.6E-11 70.9 5.3 40 3-43 49-88 (561)
173 PLN02661 Putative thiazole syn 98.3 7.5E-07 1.6E-11 66.8 4.9 40 3-42 93-134 (357)
174 PF07992 Pyr_redox_2: Pyridine 98.3 8.3E-07 1.8E-11 61.2 4.8 33 4-36 1-33 (201)
175 PRK12266 glpD glycerol-3-phosp 98.3 8.8E-07 1.9E-11 69.8 5.4 35 3-37 7-41 (508)
176 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 7.9E-07 1.7E-11 68.5 5.0 36 3-38 1-36 (433)
177 COG1252 Ndh NADH dehydrogenase 98.3 2E-06 4.3E-11 65.7 7.0 35 1-35 2-38 (405)
178 PRK12834 putative FAD-binding 98.3 1.2E-06 2.6E-11 69.7 5.8 40 2-41 4-45 (549)
179 PRK08401 L-aspartate oxidase; 98.3 9.3E-07 2E-11 69.0 5.0 35 2-36 1-35 (466)
180 PLN02507 glutathione reductase 98.3 1.2E-06 2.6E-11 69.0 5.6 41 3-43 26-75 (499)
181 PLN02463 lycopene beta cyclase 98.3 9.3E-07 2E-11 68.7 4.7 34 3-36 29-62 (447)
182 PRK12842 putative succinate de 98.3 1.2E-06 2.7E-11 70.0 5.6 39 3-41 10-48 (574)
183 PRK06327 dihydrolipoamide dehy 98.3 1.1E-06 2.4E-11 68.6 5.2 41 3-43 5-51 (475)
184 PRK15317 alkyl hydroperoxide r 98.3 1.3E-06 2.8E-11 69.0 5.5 38 3-42 212-249 (517)
185 PRK09754 phenylpropionate diox 98.3 9.1E-07 2E-11 67.6 4.4 35 2-36 144-178 (396)
186 PTZ00052 thioredoxin reductase 98.3 1.4E-06 3E-11 68.6 5.4 41 3-43 6-54 (499)
187 TIGR01320 mal_quin_oxido malat 98.3 1.2E-06 2.6E-11 68.7 4.9 34 4-37 2-37 (483)
188 PRK12844 3-ketosteroid-delta-1 98.3 1.7E-06 3.7E-11 68.9 5.7 39 3-41 7-45 (557)
189 PRK12837 3-ketosteroid-delta-1 98.3 1.6E-06 3.4E-11 68.5 5.4 38 3-41 8-45 (513)
190 PRK11101 glpA sn-glycerol-3-ph 98.3 1.5E-06 3.2E-11 69.1 5.3 34 3-36 7-40 (546)
191 PRK13369 glycerol-3-phosphate 98.3 1.5E-06 3.3E-11 68.4 5.3 34 3-36 7-40 (502)
192 TIGR03329 Phn_aa_oxid putative 98.3 1.5E-06 3.2E-11 67.7 5.0 34 3-36 25-60 (460)
193 TIGR03140 AhpF alkyl hydropero 98.3 1.6E-06 3.4E-11 68.5 5.1 38 3-42 213-250 (515)
194 PTZ00363 rab-GDP dissociation 98.2 1.3E-06 2.8E-11 67.8 4.4 40 3-42 5-44 (443)
195 COG1249 Lpd Pyruvate/2-oxoglut 98.2 2.5E-06 5.5E-11 66.2 5.9 43 2-44 4-46 (454)
196 PRK04965 NADH:flavorubredoxin 98.2 1.9E-06 4.1E-11 65.4 4.6 35 2-36 141-175 (377)
197 PRK07803 sdhA succinate dehydr 98.2 2E-06 4.3E-11 69.4 4.9 35 3-37 9-43 (626)
198 PRK07843 3-ketosteroid-delta-1 98.2 2.6E-06 5.7E-11 67.9 5.4 38 3-40 8-45 (557)
199 PRK08641 sdhA succinate dehydr 98.2 2.4E-06 5.2E-11 68.5 5.1 35 3-37 4-38 (589)
200 PRK12835 3-ketosteroid-delta-1 98.2 2.7E-06 5.9E-11 68.2 5.4 38 3-40 12-49 (584)
201 PRK06452 sdhA succinate dehydr 98.2 2.6E-06 5.6E-11 68.1 5.2 36 3-38 6-41 (566)
202 TIGR01812 sdhA_frdA_Gneg succi 98.2 2.4E-06 5.1E-11 68.2 5.0 34 4-37 1-34 (566)
203 KOG1800 Ferredoxin/adrenodoxin 98.2 3.4E-06 7.4E-11 63.4 5.4 42 3-44 21-64 (468)
204 PLN02546 glutathione reductase 98.2 2.9E-06 6.2E-11 67.6 5.3 42 3-44 80-130 (558)
205 PLN02697 lycopene epsilon cycl 98.2 2.5E-06 5.4E-11 67.5 4.9 34 3-36 109-142 (529)
206 PRK07804 L-aspartate oxidase; 98.2 3E-06 6.5E-11 67.3 5.3 36 3-38 17-52 (541)
207 PRK12839 hypothetical protein; 98.2 3.4E-06 7.5E-11 67.4 5.5 41 3-43 9-49 (572)
208 TIGR01373 soxB sarcosine oxida 98.1 3.8E-06 8.1E-11 64.3 5.2 34 3-36 31-66 (407)
209 PRK13512 coenzyme A disulfide 98.1 3.4E-06 7.4E-11 65.3 5.0 35 2-36 1-37 (438)
210 TIGR02374 nitri_red_nirB nitri 98.1 2.9E-06 6.3E-11 70.1 4.7 34 2-35 140-173 (785)
211 PRK12845 3-ketosteroid-delta-1 98.1 3.6E-06 7.7E-11 67.2 4.9 41 3-44 17-57 (564)
212 PLN02464 glycerol-3-phosphate 98.1 4.1E-06 9E-11 67.6 5.3 34 3-36 72-105 (627)
213 PRK07573 sdhA succinate dehydr 98.1 4E-06 8.8E-11 67.8 5.3 35 3-37 36-70 (640)
214 PRK07057 sdhA succinate dehydr 98.1 4.2E-06 9.1E-11 67.2 5.3 35 3-37 13-47 (591)
215 PRK06134 putative FAD-binding 98.1 5E-06 1.1E-10 66.6 5.6 41 2-42 12-52 (581)
216 TIGR01423 trypano_reduc trypan 98.1 4.7E-06 1E-10 65.4 5.4 43 2-44 3-54 (486)
217 PRK13339 malate:quinone oxidor 98.1 4.4E-06 9.6E-11 65.6 5.2 36 3-38 7-44 (497)
218 PRK05329 anaerobic glycerol-3- 98.1 4.6E-06 9.9E-11 64.3 5.1 35 1-35 1-35 (422)
219 PTZ00153 lipoamide dehydrogena 98.1 5.1E-06 1.1E-10 67.3 5.5 42 3-44 117-159 (659)
220 KOG2415 Electron transfer flav 98.1 4.6E-06 1E-10 63.6 4.7 40 3-42 77-122 (621)
221 PTZ00139 Succinate dehydrogena 98.1 5.1E-06 1.1E-10 67.0 5.1 36 3-38 30-65 (617)
222 PRK06069 sdhA succinate dehydr 98.1 5.3E-06 1.1E-10 66.4 5.1 36 3-38 6-44 (577)
223 PRK05257 malate:quinone oxidor 98.1 5E-06 1.1E-10 65.4 4.8 35 3-37 6-42 (494)
224 COG0579 Predicted dehydrogenas 98.1 5.9E-06 1.3E-10 63.6 5.1 37 2-38 3-41 (429)
225 TIGR02462 pyranose_ox pyranose 98.1 5.8E-06 1.3E-10 65.6 5.1 39 3-41 1-39 (544)
226 PRK13512 coenzyme A disulfide 98.1 3.6E-06 7.8E-11 65.2 3.9 35 2-36 148-182 (438)
227 PLN00128 Succinate dehydrogena 98.1 5.8E-06 1.3E-10 66.9 5.1 36 3-38 51-86 (635)
228 PRK08958 sdhA succinate dehydr 98.1 6E-06 1.3E-10 66.3 5.0 36 3-38 8-43 (588)
229 PRK05192 tRNA uridine 5-carbox 98.1 6.3E-06 1.4E-10 66.0 5.0 36 3-38 5-41 (618)
230 TIGR01438 TGR thioredoxin and 98.1 6.6E-06 1.4E-10 64.6 5.0 41 3-43 3-51 (484)
231 PTZ00383 malate:quinone oxidor 98.1 6.7E-06 1.5E-10 64.7 4.9 34 3-36 46-81 (497)
232 PRK06175 L-aspartate oxidase; 98.1 6.3E-06 1.4E-10 63.8 4.7 36 3-39 5-40 (433)
233 PRK08626 fumarate reductase fl 98.0 6.3E-06 1.4E-10 66.9 4.9 35 3-37 6-40 (657)
234 PRK09564 coenzyme A disulfide 98.0 6.5E-06 1.4E-10 63.7 4.8 35 3-37 1-37 (444)
235 PRK09078 sdhA succinate dehydr 98.0 6.9E-06 1.5E-10 66.0 5.0 35 3-37 13-47 (598)
236 TIGR01811 sdhA_Bsu succinate d 98.0 5.7E-06 1.2E-10 66.6 4.5 32 5-36 1-32 (603)
237 PRK12843 putative FAD-binding 98.0 8.9E-06 1.9E-10 65.2 5.5 41 3-43 17-57 (578)
238 KOG1335 Dihydrolipoamide dehyd 98.0 7.5E-06 1.6E-10 61.8 4.6 42 3-44 40-81 (506)
239 PRK14989 nitrite reductase sub 98.0 6.3E-06 1.4E-10 68.6 4.6 34 2-35 145-178 (847)
240 PTZ00306 NADH-dependent fumara 98.0 8.1E-06 1.8E-10 70.1 5.3 38 3-40 410-447 (1167)
241 PRK06854 adenylylsulfate reduc 98.0 8E-06 1.7E-10 65.8 5.0 35 3-37 12-48 (608)
242 PLN02815 L-aspartate oxidase 98.0 8.3E-06 1.8E-10 65.5 4.9 36 3-39 30-65 (594)
243 PTZ00318 NADH dehydrogenase-li 98.0 5.4E-06 1.2E-10 64.0 3.7 33 3-35 174-220 (424)
244 TIGR00551 nadB L-aspartate oxi 98.0 9.6E-06 2.1E-10 63.7 5.0 35 3-38 3-37 (488)
245 PRK05945 sdhA succinate dehydr 98.0 1E-05 2.2E-10 64.8 4.9 36 3-38 4-41 (575)
246 PRK06263 sdhA succinate dehydr 98.0 1E-05 2.2E-10 64.3 4.8 33 3-36 8-40 (543)
247 PRK08275 putative oxidoreducta 98.0 1E-05 2.2E-10 64.5 4.8 34 3-36 10-45 (554)
248 PRK14989 nitrite reductase sub 98.0 1.9E-05 4.1E-10 65.8 6.4 35 2-36 3-41 (847)
249 TIGR03385 CoA_CoA_reduc CoA-di 98.0 1E-05 2.3E-10 62.3 4.5 35 2-36 137-171 (427)
250 PRK07395 L-aspartate oxidase; 98.0 1E-05 2.2E-10 64.5 4.5 36 3-39 10-45 (553)
251 COG3075 GlpB Anaerobic glycero 98.0 1.4E-05 2.9E-10 59.3 4.7 36 1-36 1-36 (421)
252 PRK09231 fumarate reductase fl 98.0 1.1E-05 2.3E-10 64.7 4.5 37 3-39 5-43 (582)
253 PF01134 GIDA: Glucose inhibit 97.9 1.2E-05 2.5E-10 61.4 4.1 35 4-38 1-36 (392)
254 TIGR02061 aprA adenosine phosp 97.9 1.4E-05 3.1E-10 64.3 4.8 33 4-36 1-37 (614)
255 TIGR01176 fum_red_Fp fumarate 97.9 1.4E-05 3.1E-10 64.0 4.7 37 3-39 4-42 (580)
256 PF00732 GMC_oxred_N: GMC oxid 97.9 1.4E-05 3E-10 58.6 4.2 33 4-36 2-35 (296)
257 PRK04965 NADH:flavorubredoxin 97.9 1.8E-05 4E-10 60.0 4.9 36 1-36 1-38 (377)
258 PRK08071 L-aspartate oxidase; 97.9 1.6E-05 3.4E-10 62.9 4.7 35 3-38 4-38 (510)
259 COG0578 GlpA Glycerol-3-phosph 97.9 2.3E-05 5E-10 61.8 5.2 40 2-41 12-51 (532)
260 PLN02507 glutathione reductase 97.9 2.6E-05 5.5E-10 61.5 5.2 34 2-35 203-236 (499)
261 PRK07845 flavoprotein disulfid 97.9 3.1E-05 6.7E-10 60.5 5.5 35 2-36 177-211 (466)
262 PRK09077 L-aspartate oxidase; 97.9 2.5E-05 5.5E-10 62.1 5.0 36 3-39 9-44 (536)
263 KOG1298 Squalene monooxygenase 97.8 2.2E-05 4.7E-10 59.4 4.1 34 3-36 46-79 (509)
264 PRK08205 sdhA succinate dehydr 97.8 2.6E-05 5.6E-10 62.6 4.9 34 3-37 6-39 (583)
265 TIGR02374 nitri_red_nirB nitri 97.8 4.9E-05 1.1E-09 63.0 6.5 33 5-37 1-36 (785)
266 PF04820 Trp_halogenase: Trypt 97.8 2.6E-05 5.6E-10 60.8 4.4 33 4-36 1-36 (454)
267 COG1252 Ndh NADH dehydrogenase 97.8 1.3E-05 2.8E-10 61.3 2.4 33 110-143 223-256 (405)
268 PTZ00318 NADH dehydrogenase-li 97.8 2.9E-05 6.3E-10 60.0 4.3 35 2-36 10-44 (424)
269 COG1053 SdhA Succinate dehydro 97.8 4.8E-05 1E-09 60.7 5.1 35 3-37 7-41 (562)
270 PF01210 NAD_Gly3P_dh_N: NAD-d 97.8 4E-05 8.7E-10 51.4 4.0 33 4-36 1-33 (157)
271 COG3573 Predicted oxidoreducta 97.7 6.2E-05 1.3E-09 56.3 5.1 38 3-40 6-45 (552)
272 PRK13800 putative oxidoreducta 97.7 4.3E-05 9.3E-10 64.2 4.8 34 3-36 14-47 (897)
273 KOG2852 Possible oxidoreductas 97.7 1.8E-05 4E-10 57.7 1.7 37 2-38 10-52 (380)
274 PRK02106 choline dehydrogenase 97.7 5.5E-05 1.2E-09 60.4 4.6 33 3-35 6-39 (560)
275 TIGR03452 mycothione_red mycot 97.7 8.5E-05 1.8E-09 57.9 5.5 40 2-44 2-41 (452)
276 COG0446 HcaD Uncharacterized N 97.7 7.7E-05 1.7E-09 56.5 5.0 39 3-41 137-175 (415)
277 PRK07846 mycothione reductase; 97.7 6.8E-05 1.5E-09 58.4 4.6 39 3-44 2-40 (451)
278 TIGR02485 CobZ_N-term precorri 97.7 4.4E-05 9.5E-10 59.0 3.5 34 7-40 1-36 (432)
279 PF01593 Amino_oxidase: Flavin 97.6 5.1E-05 1.1E-09 57.4 3.6 31 12-42 1-31 (450)
280 KOG2820 FAD-dependent oxidored 97.6 7.2E-05 1.6E-09 55.7 4.1 34 3-36 8-41 (399)
281 PRK08229 2-dehydropantoate 2-r 97.6 0.0001 2.3E-09 55.2 4.9 35 1-35 1-35 (341)
282 TIGR00136 gidA glucose-inhibit 97.6 0.00012 2.6E-09 58.8 5.1 34 4-37 2-35 (617)
283 TIGR01810 betA choline dehydro 97.6 8.2E-05 1.8E-09 59.1 4.1 32 4-35 1-33 (532)
284 TIGR03378 glycerol3P_GlpB glyc 97.6 0.00013 2.7E-09 56.3 4.8 34 3-36 1-34 (419)
285 PF02737 3HCDH_N: 3-hydroxyacy 97.5 0.00012 2.6E-09 50.3 4.1 33 4-36 1-33 (180)
286 PRK07512 L-aspartate oxidase; 97.5 0.0001 2.2E-09 58.3 4.2 32 3-36 10-41 (513)
287 PRK01438 murD UDP-N-acetylmura 97.5 0.00016 3.4E-09 56.7 5.2 34 2-35 16-49 (480)
288 PF03721 UDPG_MGDP_dh_N: UDP-g 97.5 0.00015 3.1E-09 50.1 4.0 34 3-36 1-34 (185)
289 PRK07251 pyridine nucleotide-d 97.5 0.00026 5.6E-09 54.9 5.4 36 2-37 157-192 (438)
290 TIGR03169 Nterm_to_SelD pyridi 97.5 0.00016 3.5E-09 54.5 4.1 33 4-36 1-36 (364)
291 PRK06129 3-hydroxyacyl-CoA deh 97.4 0.00021 4.6E-09 53.0 4.4 34 3-36 3-36 (308)
292 KOG2853 Possible oxidoreductas 97.4 0.00019 4.2E-09 53.8 4.0 34 3-36 87-124 (509)
293 COG1249 Lpd Pyruvate/2-oxoglut 97.4 0.00031 6.8E-09 54.8 5.3 36 2-37 173-208 (454)
294 PRK05976 dihydrolipoamide dehy 97.4 0.00033 7.1E-09 54.9 5.4 35 2-36 180-214 (472)
295 PRK07530 3-hydroxybutyryl-CoA 97.4 0.0003 6.5E-09 51.7 4.7 34 3-36 5-38 (292)
296 COG2072 TrkA Predicted flavopr 97.4 0.00026 5.7E-09 55.1 4.5 35 2-36 175-209 (443)
297 PRK07066 3-hydroxybutyryl-CoA 97.4 0.00033 7.1E-09 52.3 4.6 34 3-36 8-41 (321)
298 KOG2404 Fumarate reductase, fl 97.3 0.00031 6.7E-09 52.3 4.3 38 4-41 11-48 (477)
299 PRK07819 3-hydroxybutyryl-CoA 97.3 0.00034 7.4E-09 51.4 4.6 34 3-36 6-39 (286)
300 TIGR01350 lipoamide_DH dihydro 97.3 0.00042 9.1E-09 53.9 5.3 36 2-37 170-205 (461)
301 KOG0405 Pyridine nucleotide-di 97.3 0.00029 6.2E-09 52.9 4.0 68 4-76 22-89 (478)
302 COG2303 BetA Choline dehydroge 97.3 0.00029 6.3E-09 56.2 4.3 33 3-35 8-40 (542)
303 PRK06416 dihydrolipoamide dehy 97.3 0.00051 1.1E-08 53.6 5.4 36 2-37 172-207 (462)
304 PRK08293 3-hydroxybutyryl-CoA 97.3 0.0004 8.7E-09 51.0 4.6 34 3-36 4-37 (287)
305 PRK06467 dihydrolipoamide dehy 97.3 0.00051 1.1E-08 53.8 5.2 36 2-37 174-209 (471)
306 TIGR01421 gluta_reduc_1 glutat 97.3 0.00055 1.2E-08 53.4 5.2 36 2-37 166-201 (450)
307 PRK09260 3-hydroxybutyryl-CoA 97.3 0.0004 8.7E-09 51.0 4.3 34 3-36 2-35 (288)
308 PRK05249 soluble pyridine nucl 97.3 0.00058 1.3E-08 53.2 5.3 36 2-37 175-210 (461)
309 PRK05708 2-dehydropantoate 2-r 97.3 0.00058 1.3E-08 50.6 5.1 35 1-35 1-35 (305)
310 PRK02705 murD UDP-N-acetylmura 97.3 0.00045 9.7E-09 53.8 4.6 33 4-36 2-34 (459)
311 PRK07846 mycothione reductase; 97.3 0.00061 1.3E-08 53.1 5.4 35 2-36 166-200 (451)
312 PRK06115 dihydrolipoamide dehy 97.3 0.00061 1.3E-08 53.3 5.4 36 2-37 174-209 (466)
313 TIGR02053 MerA mercuric reduct 97.3 0.00058 1.2E-08 53.3 5.2 36 2-37 166-201 (463)
314 PRK06249 2-dehydropantoate 2-r 97.3 0.00067 1.4E-08 50.4 5.3 34 2-35 5-38 (313)
315 PRK06912 acoL dihydrolipoamide 97.2 0.00066 1.4E-08 53.0 5.3 36 2-37 170-205 (458)
316 PF03446 NAD_binding_2: NAD bi 97.2 0.00072 1.6E-08 45.5 4.9 35 2-36 1-35 (163)
317 PRK11064 wecC UDP-N-acetyl-D-m 97.2 0.00052 1.1E-08 53.1 4.6 34 3-36 4-37 (415)
318 PRK06292 dihydrolipoamide dehy 97.2 0.00067 1.4E-08 52.9 5.3 36 2-37 169-204 (460)
319 PRK06035 3-hydroxyacyl-CoA deh 97.2 0.00052 1.1E-08 50.5 4.4 34 3-36 4-37 (291)
320 PRK14106 murD UDP-N-acetylmura 97.2 0.00067 1.4E-08 52.7 5.2 34 2-35 5-38 (450)
321 PRK06370 mercuric reductase; V 97.2 0.00072 1.6E-08 52.8 5.4 36 2-37 171-206 (463)
322 PRK06522 2-dehydropantoate 2-r 97.2 0.00058 1.3E-08 50.2 4.6 33 3-35 1-33 (304)
323 COG1206 Gid NAD(FAD)-utilizing 97.2 0.00046 9.9E-09 51.5 3.9 35 2-36 3-37 (439)
324 PRK06327 dihydrolipoamide dehy 97.2 0.00079 1.7E-08 52.8 5.3 36 2-37 183-218 (475)
325 KOG2960 Protein involved in th 97.2 0.00011 2.4E-09 51.7 0.3 39 4-42 78-119 (328)
326 PRK07818 dihydrolipoamide dehy 97.2 0.00084 1.8E-08 52.5 5.3 35 2-36 172-206 (466)
327 PRK12921 2-dehydropantoate 2-r 97.2 0.00071 1.5E-08 49.8 4.6 31 3-33 1-31 (305)
328 PRK05808 3-hydroxybutyryl-CoA 97.2 0.00069 1.5E-08 49.6 4.5 34 3-36 4-37 (282)
329 PRK00094 gpsA NAD(P)H-dependen 97.2 0.00072 1.6E-08 50.2 4.6 34 3-36 2-35 (325)
330 COG0569 TrkA K+ transport syst 97.1 0.00075 1.6E-08 48.0 4.4 34 3-36 1-34 (225)
331 COG0029 NadB Aspartate oxidase 97.1 0.00045 9.7E-09 53.9 3.4 32 4-36 9-40 (518)
332 KOG4254 Phytoene desaturase [C 97.1 0.0005 1.1E-08 53.2 3.5 40 3-42 15-54 (561)
333 TIGR01316 gltA glutamate synth 97.1 0.00099 2.2E-08 51.9 5.3 34 2-35 272-305 (449)
334 KOG3923 D-aspartate oxidase [A 97.1 0.00054 1.2E-08 50.3 3.4 36 1-36 2-44 (342)
335 PLN02785 Protein HOTHEAD 97.1 0.00077 1.7E-08 54.3 4.6 32 3-35 56-87 (587)
336 TIGR03452 mycothione_red mycot 97.1 0.001 2.2E-08 51.9 5.2 36 2-37 169-204 (452)
337 PF06100 Strep_67kDa_ant: Stre 97.1 0.00079 1.7E-08 52.7 4.4 41 2-42 2-46 (500)
338 PRK07531 bifunctional 3-hydrox 97.1 0.00086 1.9E-08 53.0 4.7 35 2-36 4-38 (495)
339 PRK14619 NAD(P)H-dependent gly 97.1 0.0012 2.6E-08 49.0 5.2 35 2-36 4-38 (308)
340 PRK14618 NAD(P)H-dependent gly 97.1 0.00088 1.9E-08 50.1 4.5 35 2-36 4-38 (328)
341 KOG1336 Monodehydroascorbate/f 97.1 0.0018 3.8E-08 50.3 6.1 33 3-35 214-246 (478)
342 PRK06130 3-hydroxybutyryl-CoA 97.1 0.001 2.3E-08 49.2 4.8 34 3-36 5-38 (311)
343 PRK10262 thioredoxin reductase 97.1 0.0013 2.8E-08 48.8 5.2 35 2-36 146-180 (321)
344 TIGR03140 AhpF alkyl hydropero 97.1 0.0012 2.7E-08 52.3 5.3 36 2-37 352-387 (515)
345 KOG0404 Thioredoxin reductase 97.0 0.0011 2.4E-08 47.1 4.3 42 3-44 9-54 (322)
346 PRK11559 garR tartronate semia 97.0 0.0011 2.4E-08 48.8 4.5 36 1-36 1-36 (296)
347 TIGR03169 Nterm_to_SelD pyridi 97.0 0.001 2.2E-08 50.2 4.5 29 3-31 146-180 (364)
348 PRK12831 putative oxidoreducta 97.0 0.0013 2.7E-08 51.6 5.1 34 2-35 281-314 (464)
349 PF02558 ApbA: Ketopantoate re 97.0 0.0016 3.5E-08 43.0 4.9 31 5-35 1-31 (151)
350 PRK14620 NAD(P)H-dependent gly 97.0 0.0015 3.2E-08 48.8 4.9 33 3-35 1-33 (326)
351 COG1004 Ugd Predicted UDP-gluc 97.0 0.0012 2.7E-08 50.2 4.5 34 3-36 1-34 (414)
352 PLN02545 3-hydroxybutyryl-CoA 97.0 0.0012 2.6E-08 48.6 4.4 34 3-36 5-38 (295)
353 PTZ00058 glutathione reductase 97.0 0.0015 3.2E-08 52.4 5.1 35 2-36 237-271 (561)
354 PRK15317 alkyl hydroperoxide r 97.0 0.0016 3.5E-08 51.6 5.3 36 2-37 351-386 (517)
355 TIGR01470 cysG_Nterm siroheme 96.9 0.0021 4.6E-08 45.0 5.1 33 2-34 9-41 (205)
356 TIGR01424 gluta_reduc_2 glutat 96.9 0.002 4.4E-08 50.1 5.4 35 2-36 166-200 (446)
357 PRK08010 pyridine nucleotide-d 96.9 0.0021 4.5E-08 49.9 5.4 36 2-37 158-193 (441)
358 PRK09564 coenzyme A disulfide 96.9 0.0018 4E-08 50.1 5.1 35 2-36 149-183 (444)
359 TIGR03143 AhpF_homolog putativ 96.9 0.0019 4.1E-08 51.8 5.2 35 2-36 143-177 (555)
360 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.9 0.0014 3E-08 51.9 4.4 34 3-36 6-39 (503)
361 PRK11880 pyrroline-5-carboxyla 96.9 0.0016 3.4E-08 47.2 4.3 36 1-36 1-39 (267)
362 TIGR03026 NDP-sugDHase nucleot 96.9 0.0013 2.9E-08 50.6 4.2 34 3-36 1-34 (411)
363 PRK06116 glutathione reductase 96.9 0.0021 4.5E-08 50.0 5.2 35 2-36 167-201 (450)
364 PF01262 AlaDh_PNT_C: Alanine 96.9 0.0024 5.3E-08 43.2 5.0 35 2-36 20-54 (168)
365 TIGR01292 TRX_reduct thioredox 96.9 0.0024 5.2E-08 46.5 5.2 35 2-36 141-175 (300)
366 PF13241 NAD_binding_7: Putati 96.9 0.0016 3.4E-08 40.6 3.6 33 2-34 7-39 (103)
367 cd01080 NAD_bind_m-THF_DH_Cycl 96.9 0.0026 5.7E-08 43.2 4.9 33 2-34 44-77 (168)
368 PRK13748 putative mercuric red 96.8 0.0022 4.7E-08 51.3 5.1 34 2-35 270-303 (561)
369 PF01488 Shikimate_DH: Shikima 96.8 0.0031 6.7E-08 41.2 5.0 35 2-36 12-47 (135)
370 PRK07417 arogenate dehydrogena 96.8 0.0017 3.8E-08 47.4 4.2 34 3-36 1-34 (279)
371 COG1251 NirB NAD(P)H-nitrite r 96.8 0.00028 6E-09 57.3 -0.0 32 3-34 146-177 (793)
372 PTZ00153 lipoamide dehydrogena 96.8 0.0024 5.1E-08 52.2 5.2 36 2-37 312-347 (659)
373 PRK08268 3-hydroxy-acyl-CoA de 96.8 0.0019 4.2E-08 51.2 4.4 34 3-36 8-41 (507)
374 PRK12770 putative glutamate sy 96.8 0.0027 5.8E-08 47.9 5.0 34 2-35 172-206 (352)
375 PRK04148 hypothetical protein; 96.8 0.0019 4.1E-08 42.2 3.6 34 2-36 17-50 (134)
376 PRK06718 precorrin-2 dehydroge 96.8 0.003 6.5E-08 44.2 4.9 33 2-34 10-42 (202)
377 PRK06719 precorrin-2 dehydroge 96.8 0.0034 7.5E-08 42.1 4.9 31 2-32 13-43 (157)
378 PRK14727 putative mercuric red 96.8 0.0029 6.2E-08 49.8 5.1 33 2-34 188-220 (479)
379 PLN02546 glutathione reductase 96.7 0.0033 7.1E-08 50.5 5.3 36 2-37 252-287 (558)
380 PF07991 IlvN: Acetohydroxy ac 96.7 0.0051 1.1E-07 41.4 5.4 35 2-36 4-38 (165)
381 COG3634 AhpF Alkyl hydroperoxi 96.7 0.0015 3.2E-08 49.3 3.0 35 2-36 354-388 (520)
382 PRK14694 putative mercuric red 96.7 0.003 6.5E-08 49.5 4.9 33 2-34 178-210 (468)
383 PRK08306 dipicolinate synthase 96.7 0.0034 7.3E-08 46.4 4.9 35 2-36 152-186 (296)
384 PRK12778 putative bifunctional 96.7 0.003 6.6E-08 52.3 5.1 35 2-36 570-605 (752)
385 cd05292 LDH_2 A subgroup of L- 96.7 0.0035 7.5E-08 46.6 4.9 34 3-36 1-36 (308)
386 cd00401 AdoHcyase S-adenosyl-L 96.7 0.0035 7.5E-08 48.4 5.0 35 2-36 202-236 (413)
387 PRK01710 murD UDP-N-acetylmura 96.7 0.0032 7E-08 49.2 4.9 34 2-35 14-47 (458)
388 TIGR01915 npdG NADPH-dependent 96.7 0.0037 8E-08 44.1 4.8 33 3-35 1-34 (219)
389 TIGR01438 TGR thioredoxin and 96.7 0.0032 6.9E-08 49.6 4.8 33 2-34 180-212 (484)
390 PRK09424 pntA NAD(P) transhydr 96.7 0.0031 6.7E-08 50.0 4.6 35 2-36 165-199 (509)
391 PRK04690 murD UDP-N-acetylmura 96.7 0.0033 7.1E-08 49.4 4.8 33 2-34 8-40 (468)
392 PRK03369 murD UDP-N-acetylmura 96.6 0.0033 7.3E-08 49.6 4.7 33 2-34 12-44 (488)
393 PRK11749 dihydropyrimidine deh 96.6 0.0041 8.9E-08 48.6 5.2 34 2-35 273-307 (457)
394 PRK11730 fadB multifunctional 96.6 0.0027 5.7E-08 52.4 4.2 34 3-36 314-347 (715)
395 PRK06223 malate dehydrogenase; 96.6 0.0047 1E-07 45.7 5.2 35 2-36 2-37 (307)
396 PTZ00052 thioredoxin reductase 96.6 0.0037 8E-08 49.5 4.9 33 2-34 182-214 (499)
397 PRK04308 murD UDP-N-acetylmura 96.6 0.0046 1E-07 48.1 5.3 35 2-36 5-39 (445)
398 TIGR01763 MalateDH_bact malate 96.6 0.0049 1.1E-07 45.8 5.2 34 3-36 2-36 (305)
399 TIGR00518 alaDH alanine dehydr 96.6 0.0039 8.5E-08 47.5 4.7 33 3-35 168-200 (370)
400 TIGR01423 trypano_reduc trypan 96.6 0.0046 9.9E-08 48.8 5.2 36 2-37 187-225 (486)
401 COG0771 MurD UDP-N-acetylmuram 96.6 0.0033 7.1E-08 49.0 4.2 35 2-36 7-41 (448)
402 TIGR02437 FadB fatty oxidation 96.6 0.0031 6.7E-08 52.0 4.2 34 3-36 314-347 (714)
403 PRK02472 murD UDP-N-acetylmura 96.6 0.0045 9.6E-08 48.1 4.9 34 2-35 5-38 (447)
404 TIGR02853 spore_dpaA dipicolin 96.6 0.0044 9.6E-08 45.7 4.6 35 2-36 151-185 (287)
405 PLN02353 probable UDP-glucose 96.5 0.0043 9.3E-08 48.8 4.7 35 2-36 1-37 (473)
406 PRK15461 NADH-dependent gamma- 96.5 0.0047 1E-07 45.6 4.5 34 3-36 2-35 (296)
407 PLN02172 flavin-containing mon 96.5 0.0043 9.3E-08 48.7 4.5 34 2-35 204-237 (461)
408 PF06039 Mqo: Malate:quinone o 96.5 0.0055 1.2E-07 47.8 4.9 37 2-38 3-41 (488)
409 PRK15057 UDP-glucose 6-dehydro 96.5 0.0039 8.4E-08 47.9 4.1 33 3-36 1-33 (388)
410 cd01075 NAD_bind_Leu_Phe_Val_D 96.5 0.0067 1.5E-07 42.3 4.9 34 2-35 28-61 (200)
411 KOG2844 Dimethylglycine dehydr 96.5 0.0038 8.3E-08 50.6 4.0 40 3-42 40-81 (856)
412 cd05191 NAD_bind_amino_acid_DH 96.4 0.0089 1.9E-07 35.8 4.8 32 2-33 23-55 (86)
413 PRK07502 cyclohexadienyl dehyd 96.4 0.0051 1.1E-07 45.6 4.4 35 2-36 6-42 (307)
414 PF13434 K_oxygenase: L-lysine 96.4 0.0032 6.9E-08 47.5 3.3 35 3-37 3-38 (341)
415 PRK08017 oxidoreductase; Provi 96.4 0.0068 1.5E-07 43.1 4.8 35 1-35 1-36 (256)
416 PRK00141 murD UDP-N-acetylmura 96.4 0.0059 1.3E-07 48.0 4.8 33 2-34 15-47 (473)
417 PRK12779 putative bifunctional 96.4 0.0065 1.4E-07 51.6 5.2 34 2-35 447-480 (944)
418 COG1748 LYS9 Saccharopine dehy 96.4 0.0066 1.4E-07 46.5 4.7 35 2-36 1-36 (389)
419 COG1250 FadB 3-hydroxyacyl-CoA 96.4 0.0055 1.2E-07 45.5 4.2 35 2-36 3-37 (307)
420 KOG1238 Glucose dehydrogenase/ 96.4 0.0048 1E-07 49.6 4.1 34 3-36 58-92 (623)
421 TIGR00936 ahcY adenosylhomocys 96.4 0.0073 1.6E-07 46.6 4.9 34 2-35 195-228 (406)
422 PRK11199 tyrA bifunctional cho 96.4 0.0062 1.3E-07 46.5 4.6 34 2-35 98-132 (374)
423 TIGR00872 gnd_rel 6-phosphoglu 96.4 0.006 1.3E-07 45.1 4.3 34 3-36 1-34 (298)
424 cd05291 HicDH_like L-2-hydroxy 96.3 0.0082 1.8E-07 44.6 5.0 34 3-36 1-36 (306)
425 PRK11154 fadJ multifunctional 96.3 0.0051 1.1E-07 50.8 4.2 34 3-36 310-344 (708)
426 TIGR02441 fa_ox_alpha_mit fatt 96.3 0.0048 1E-07 51.1 4.0 34 3-36 336-369 (737)
427 TIGR02354 thiF_fam2 thiamine b 96.3 0.0086 1.9E-07 41.8 4.8 33 2-34 21-54 (200)
428 TIGR01505 tartro_sem_red 2-hyd 96.3 0.0059 1.3E-07 44.8 4.0 33 4-36 1-33 (291)
429 PRK12549 shikimate 5-dehydroge 96.3 0.0084 1.8E-07 44.1 4.8 34 2-35 127-161 (284)
430 COG0445 GidA Flavin-dependent 96.3 0.0089 1.9E-07 47.5 5.1 45 3-47 5-49 (621)
431 KOG4716 Thioredoxin reductase 96.3 0.0059 1.3E-07 46.0 3.7 31 3-33 20-50 (503)
432 PF00056 Ldh_1_N: lactate/mala 96.2 0.014 3.1E-07 38.4 5.1 33 3-35 1-36 (141)
433 COG0240 GpsA Glycerol-3-phosph 96.2 0.0085 1.8E-07 44.8 4.4 35 2-36 1-35 (329)
434 PRK05476 S-adenosyl-L-homocyst 96.2 0.0096 2.1E-07 46.2 4.9 35 2-36 212-246 (425)
435 PRK01368 murD UDP-N-acetylmura 96.2 0.0076 1.6E-07 47.2 4.4 32 2-34 6-37 (454)
436 TIGR02440 FadJ fatty oxidation 96.2 0.0071 1.5E-07 49.8 4.3 34 3-36 305-339 (699)
437 PF00899 ThiF: ThiF family; I 96.2 0.011 2.4E-07 38.4 4.5 33 2-34 2-35 (135)
438 cd05311 NAD_bind_2_malic_enz N 96.2 0.01 2.3E-07 42.2 4.6 33 2-34 25-60 (226)
439 KOG2665 Predicted FAD-dependen 96.1 0.0052 1.1E-07 45.9 2.9 36 3-38 49-86 (453)
440 PTZ00082 L-lactate dehydrogena 96.1 0.014 3E-07 43.8 5.2 34 3-36 7-41 (321)
441 PRK00421 murC UDP-N-acetylmura 96.1 0.009 2E-07 46.7 4.3 34 2-35 7-41 (461)
442 PRK12480 D-lactate dehydrogena 96.1 0.013 2.9E-07 44.0 5.1 35 2-36 146-180 (330)
443 PF00670 AdoHcyase_NAD: S-aden 96.1 0.011 2.4E-07 39.9 4.1 35 2-36 23-57 (162)
444 PRK02006 murD UDP-N-acetylmura 96.1 0.01 2.3E-07 46.8 4.7 34 2-35 7-40 (498)
445 COG1893 ApbA Ketopantoate redu 96.1 0.01 2.2E-07 44.2 4.3 34 3-36 1-34 (307)
446 PRK00683 murD UDP-N-acetylmura 96.1 0.011 2.5E-07 45.6 4.7 34 3-36 4-37 (418)
447 COG0287 TyrA Prephenate dehydr 96.1 0.016 3.5E-07 42.5 5.2 36 1-36 2-37 (279)
448 PRK09599 6-phosphogluconate de 96.0 0.011 2.3E-07 43.8 4.4 34 3-36 1-34 (301)
449 PRK06545 prephenate dehydrogen 96.0 0.014 3E-07 44.3 4.9 34 3-36 1-34 (359)
450 cd01065 NAD_bind_Shikimate_DH 96.0 0.016 3.6E-07 38.2 4.7 35 2-36 19-54 (155)
451 PRK12814 putative NADPH-depend 96.0 0.014 3.1E-07 47.7 5.2 34 2-35 323-357 (652)
452 TIGR03376 glycerol3P_DH glycer 96.0 0.015 3.2E-07 44.0 4.8 31 4-34 1-39 (342)
453 TIGR00561 pntA NAD(P) transhyd 96.0 0.013 2.8E-07 46.5 4.6 34 3-36 165-198 (511)
454 PTZ00142 6-phosphogluconate de 96.0 0.01 2.2E-07 46.7 4.0 34 3-36 2-35 (470)
455 PLN02256 arogenate dehydrogena 96.0 0.017 3.7E-07 42.9 5.0 34 2-35 36-69 (304)
456 PRK09496 trkA potassium transp 95.9 0.012 2.6E-07 45.7 4.3 34 3-36 1-34 (453)
457 PF03807 F420_oxidored: NADP o 95.9 0.016 3.5E-07 35.1 4.1 33 4-36 1-37 (96)
458 PRK00066 ldh L-lactate dehydro 95.9 0.019 4.1E-07 42.9 5.2 35 2-36 6-42 (315)
459 TIGR00507 aroE shikimate 5-deh 95.9 0.018 3.9E-07 41.9 4.9 34 2-35 117-150 (270)
460 PRK12490 6-phosphogluconate de 95.9 0.014 3E-07 43.1 4.4 34 3-36 1-34 (299)
461 PF02826 2-Hacid_dh_C: D-isome 95.9 0.027 5.8E-07 38.5 5.4 35 2-36 36-70 (178)
462 PLN02494 adenosylhomocysteinas 95.9 0.019 4.1E-07 45.1 5.0 35 2-36 254-288 (477)
463 PRK12548 shikimate 5-dehydroge 95.8 0.021 4.5E-07 42.1 5.0 34 2-35 126-160 (289)
464 PRK05479 ketol-acid reductoiso 95.8 0.019 4.1E-07 43.2 4.7 33 2-34 17-49 (330)
465 TIGR01317 GOGAT_sm_gam glutama 95.8 0.022 4.8E-07 45.0 5.4 35 2-36 283-318 (485)
466 PRK12475 thiamine/molybdopteri 95.8 0.02 4.3E-07 43.2 4.9 33 2-34 24-57 (338)
467 COG2084 MmsB 3-hydroxyisobutyr 95.8 0.017 3.6E-07 42.6 4.3 34 3-36 1-34 (286)
468 PF02254 TrkA_N: TrkA-N domain 95.8 0.021 4.5E-07 35.9 4.3 32 5-36 1-32 (116)
469 PF00996 GDI: GDP dissociation 95.7 0.016 3.5E-07 45.1 4.3 40 3-42 5-44 (438)
470 PRK00258 aroE shikimate 5-dehy 95.7 0.024 5.3E-07 41.5 5.0 35 2-36 123-158 (278)
471 PRK15116 sulfur acceptor prote 95.7 0.025 5.3E-07 41.4 5.0 33 2-34 30-63 (268)
472 TIGR01318 gltD_gamma_fam gluta 95.7 0.025 5.5E-07 44.4 5.3 35 2-36 282-317 (467)
473 PTZ00117 malate dehydrogenase; 95.7 0.027 5.8E-07 42.2 5.2 35 2-36 5-40 (319)
474 PRK01390 murD UDP-N-acetylmura 95.7 0.017 3.7E-07 45.1 4.3 34 2-35 9-42 (460)
475 PTZ00075 Adenosylhomocysteinas 95.7 0.025 5.3E-07 44.5 5.1 35 2-36 254-288 (476)
476 PTZ00345 glycerol-3-phosphate 95.7 0.026 5.6E-07 43.0 5.1 34 3-36 12-52 (365)
477 cd05213 NAD_bind_Glutamyl_tRNA 95.7 0.02 4.4E-07 42.6 4.4 34 2-35 178-212 (311)
478 PRK12439 NAD(P)H-dependent gly 95.6 0.02 4.4E-07 43.1 4.4 33 2-35 7-39 (341)
479 PRK15059 tartronate semialdehy 95.6 0.022 4.7E-07 42.1 4.5 33 3-35 1-33 (292)
480 cd01078 NAD_bind_H4MPT_DH NADP 95.6 0.03 6.5E-07 38.6 5.0 34 2-35 28-62 (194)
481 KOG2304 3-hydroxyacyl-CoA dehy 95.6 0.015 3.2E-07 41.4 3.4 35 2-36 11-45 (298)
482 PRK05993 short chain dehydroge 95.6 0.029 6.2E-07 40.7 4.9 36 1-36 3-39 (277)
483 PRK00045 hemA glutamyl-tRNA re 95.6 0.026 5.7E-07 43.8 4.9 34 2-35 182-216 (423)
484 PRK05562 precorrin-2 dehydroge 95.5 0.031 6.8E-07 39.7 4.8 31 2-32 25-55 (223)
485 TIGR01809 Shik-DH-AROM shikima 95.5 0.03 6.6E-07 41.1 4.9 35 2-36 125-160 (282)
486 PRK09496 trkA potassium transp 95.5 0.028 6E-07 43.7 4.9 35 2-36 231-265 (453)
487 PRK14192 bifunctional 5,10-met 95.5 0.032 7E-07 41.1 4.9 33 2-34 159-192 (283)
488 PRK14194 bifunctional 5,10-met 95.5 0.029 6.3E-07 41.6 4.7 34 2-35 159-193 (301)
489 COG2085 Predicted dinucleotide 95.5 0.031 6.8E-07 39.2 4.6 33 2-34 1-33 (211)
490 PRK12810 gltD glutamate syntha 95.5 0.026 5.6E-07 44.4 4.7 34 2-35 281-315 (471)
491 TIGR01035 hemA glutamyl-tRNA r 95.5 0.031 6.7E-07 43.4 5.0 34 2-35 180-214 (417)
492 PF13434 K_oxygenase: L-lysine 95.5 0.024 5.1E-07 42.8 4.2 34 2-35 190-225 (341)
493 PRK07688 thiamine/molybdopteri 95.4 0.033 7.1E-07 42.1 4.9 33 2-34 24-57 (339)
494 PRK08507 prephenate dehydrogen 95.4 0.026 5.6E-07 41.2 4.2 33 3-35 1-35 (275)
495 PRK08655 prephenate dehydrogen 95.4 0.029 6.4E-07 43.8 4.7 34 3-36 1-35 (437)
496 PF10727 Rossmann-like: Rossma 95.4 0.013 2.7E-07 38.0 2.2 30 3-32 11-40 (127)
497 COG3634 AhpF Alkyl hydroperoxi 95.4 0.013 2.8E-07 44.4 2.5 29 3-31 212-240 (520)
498 KOG1336 Monodehydroascorbate/f 95.4 0.16 3.5E-06 39.8 8.4 30 3-32 75-106 (478)
499 cd00757 ThiF_MoeB_HesA_family 95.4 0.037 8E-07 39.3 4.7 33 2-34 21-54 (228)
500 PLN02695 GDP-D-mannose-3',5'-e 95.3 0.039 8.5E-07 42.0 5.1 34 2-35 21-55 (370)
No 1
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.82 E-value=1.7e-19 Score=139.29 Aligned_cols=76 Identities=42% Similarity=0.653 Sum_probs=58.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCCccCccCCcc---ccccccc-------cceeeeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLT---ALSGQIY-------IGEIMNFR 71 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~---~~~~~~~-------~~~~~~~~ 71 (143)
.++|+|||||++||++|..|++.|++++||||++.+||+|.++++...+++++.+ .+++++| |++.|.|+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 4799999999999999999999999999999999999999998765434443321 1334444 66677777
Q ss_pred ccccCC
Q 038409 72 EYPFLA 77 (143)
Q Consensus 72 ~~~~~~ 77 (143)
|+|+..
T Consensus 90 dfp~~~ 95 (461)
T PLN02172 90 DFPFVP 95 (461)
T ss_pred CCCCCc
Confidence 776643
No 2
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=4e-18 Score=130.57 Aligned_cols=127 Identities=31% Similarity=0.457 Sum_probs=89.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCCccCccCCccccccccc-------cceeeeeecc
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIY-------IGEIMNFREY 73 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~ 73 (143)
|.++|+|||||+|||++|++|.+.|+++++|||.+.+||+|.++++... .++++| |+++|.|+|+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~--------~~ss~Y~~l~tn~pKe~~~~~df 76 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEV--------VHSSVYKSLRTNLPKEMMGYSDF 76 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccc--------cccchhhhhhccCChhhhcCCCC
Confidence 3689999999999999999999999999999999999999999977641 233333 8999999999
Q ss_pred ccCCCCCCCCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeec--c--eEEEccCc----EEEeeeEe
Q 038409 74 PFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHEN--G--SVVIRIQR----VIFTDIIQ 142 (143)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~--~--~v~~~dG~----~~~aD~vI 142 (143)
||+.. ....||.+.+...+.+.+..+. .....|+++.++..+.+. | +|.+.+.. +..+|.|+
T Consensus 77 pf~~~-----~~~~~p~~~e~~~YL~~yA~~F--~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~Vv 146 (448)
T KOG1399|consen 77 PFPER-----DPRYFPSHREVLEYLRDYAKHF--DLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVV 146 (448)
T ss_pred CCccc-----CcccCCCHHHHHHHHHHHHHhc--ChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEE
Confidence 99876 3455676655322110011111 122457778777777532 4 57776653 55678775
No 3
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.69 E-value=1.5e-17 Score=130.40 Aligned_cols=127 Identities=23% Similarity=0.312 Sum_probs=81.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCCccCccCCccccccccc---cceeeeeeccccCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIY---IGEIMNFREYPFLAR 78 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~ 78 (143)
.|+|+|||||++||++|..|.+.|+++++|||++.+||+|.+.++.......+ ..++. ++++|.|+|+||+..
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~----y~sl~~n~sk~~~~fsdfp~p~~ 76 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSV----YDSLHTNTSKEMMAFSDFPFPED 76 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGG----STT-B-SS-GGGSCCTTS-HCCC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCcccc----ccceEEeeCchHhcCCCcCCCCC
Confidence 37999999999999999999999999999999999999999876542111111 11111 788999999999876
Q ss_pred CCCCCCCCcCCCCceeeceEEEEEEeeec--cCCCCeEEcCceEEEeec------c--eEEEcc-Cc--EEEeeeEe
Q 038409 79 NDGTADPRRFRGHWETAGVAKVYIASKLV--AGYNNMLLYSMIESIHEN------G--SVVIRI-QR--VIFTDIIQ 142 (143)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~v~~~~~~------~--~v~~~d-G~--~~~aD~vI 142 (143)
.+.||.+.+..+ |+.+... .....|+++++|++++.. + .|++.+ |+ +..+|.||
T Consensus 77 ------~p~f~~~~~v~~----Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~Vv 143 (531)
T PF00743_consen 77 ------YPDFPSHSEVLE----YLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVV 143 (531)
T ss_dssp ------CSSSEBHHHHHH----HHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEE
T ss_pred ------CCCCCCHHHHHH----HHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEE
Confidence 667876655322 1111111 223468888888888632 2 366654 43 34578776
No 4
>PRK05868 hypothetical protein; Validated
Probab=99.52 E-value=8.7e-14 Score=105.20 Aligned_cols=133 Identities=18% Similarity=0.107 Sum_probs=74.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCCc--cCccCCccccccccccceeeeeeccc--
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQVE--LQPGLVLTALSGQIYIGEIMNFREYP-- 74 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~-- 74 (143)
|++|+|||||++|+++|+.|++.|++|+||||++.. |..+...++.. ++.+|+.+.+.....+...+.+.+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 479999999999999999999999999999998773 33333344331 45667653332221111111121100
Q ss_pred -cCCCCCCCCCCCcCCCCceeeceEEEEEEeeec---------cCCCCeEEcCceEEEeecc---eEEEccCcEEEeeeE
Q 038409 75 -FLARNDGTADPRRFRGHWETAGVAKVYIASKLV---------AGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDII 141 (143)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~v 141 (143)
+... .......+.... ..+..+|.. .....++++++++++++++ .|+|+||+++++|+|
T Consensus 81 ~~~~~--~~~~~~~~~~~~------~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlv 152 (372)
T PRK05868 81 ELFRD--TESTPTGGPVNS------PDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLV 152 (372)
T ss_pred EEeec--ccccccCCCCCC------ceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEE
Confidence 0000 000000000000 001111110 1224577888899987543 578999999999999
Q ss_pred e
Q 038409 142 Q 142 (143)
Q Consensus 142 I 142 (143)
|
T Consensus 153 I 153 (372)
T PRK05868 153 I 153 (372)
T ss_pred E
Confidence 8
No 5
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.49 E-value=1.3e-13 Score=104.62 Aligned_cols=135 Identities=15% Similarity=0.108 Sum_probs=73.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCCc--cCccCCccccccccccceeeeeeccccC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQVE--LQPGLVLTALSGQIYIGEIMNFREYPFL 76 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (143)
.++|+|||||++|+++|+.|++.|++|+||||++.. |..+...++.. ++.+|+.+.+.....+...+.+.+....
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 458999999999999999999999999999998774 33333344432 4556664333222211111111111000
Q ss_pred CCCCCCCCCCcCCCCce-eeceE-EEEEEeeec-----------cCCCCeEEcCceEEEeecc---eEEEccCcEEEeee
Q 038409 77 ARNDGTADPRRFRGHWE-TAGVA-KVYIASKLV-----------AGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDI 140 (143)
Q Consensus 77 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~-----------~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~ 140 (143)
.. ...++.... ..... +....++.. .....+++++++++++.++ .+++.||+++++|+
T Consensus 84 ~~------~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 157 (396)
T PRK08163 84 EE------VVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDA 157 (396)
T ss_pred CE------EEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCE
Confidence 00 000000000 00000 112222211 1124577788888886433 57889999999999
Q ss_pred Ee
Q 038409 141 IQ 142 (143)
Q Consensus 141 vI 142 (143)
||
T Consensus 158 vV 159 (396)
T PRK08163 158 LI 159 (396)
T ss_pred EE
Confidence 98
No 6
>PRK07588 hypothetical protein; Provisional
Probab=99.48 E-value=1.9e-13 Score=103.70 Aligned_cols=133 Identities=17% Similarity=0.013 Sum_probs=72.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCC--ccCccCCccccccccccceeeeeeccccCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQV--ELQPGLVLTALSGQIYIGEIMNFREYPFLA 77 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
++|+|||||++|+++|+.|++.|++|+||||.+.. |..+...++. .++.+|+.+.+....++...+.+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~--- 77 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT--- 77 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC---
Confidence 58999999999999999999999999999998763 3334333333 134556543322222211111111100
Q ss_pred CCCCCCCCCcCCCCceeeceE-EEEEEeeec---------cCCCCeEEcCceEEEeecc---eEEEccCcEEEeeeEe
Q 038409 78 RNDGTADPRRFRGHWETAGVA-KVYIASKLV---------AGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDIIQ 142 (143)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~vI 142 (143)
+.....++......... ..+..++.. .....+++++++++++.++ .|+|+||+++++|+||
T Consensus 78 ----g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vI 151 (391)
T PRK07588 78 ----GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVI 151 (391)
T ss_pred ----CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEE
Confidence 00000000000000000 001111110 1224688888999987543 5789999999999998
No 7
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.47 E-value=1.2e-14 Score=108.43 Aligned_cols=140 Identities=13% Similarity=0.087 Sum_probs=86.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc--------eeeeecCCCccCcc--CCc---cccccccc---c
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT--------QTHLAMPQVELQPG--LVL---TALSGQIY---I 64 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G--------g~~~~~~~~~~~~~--g~~---~~~~~~~~---~ 64 (143)
|..+|+|||||++||+||..+.+.|++|+|||+.+.+| |.|++++....+.+ ..+ ..+.+.+. +
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 35689999999999999999999999999999999965 66776654321111 000 11222111 2
Q ss_pred ceeeeeec-cccCCCCCCCCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeecc---eEEEccCcEEEeee
Q 038409 65 GEIMNFRE-YPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDI 140 (143)
Q Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~ 140 (143)
.++..+.. +.... ..+...+.||....++.+.+ .+..++......++++++|.++..++ .+.+.+|+++.||.
T Consensus 82 ~d~i~~~e~~Gi~~--~e~~~Gr~Fp~sdkA~~Iv~-~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 82 EDFIDWVEGLGIAL--KEEDLGRMFPDSDKASPIVD-ALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred HHHHHHHHhcCCee--EEccCceecCCccchHHHHH-HHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 22222210 00000 03334677887555433222 12223334567788899999998663 58888999999999
Q ss_pred EeC
Q 038409 141 IQH 143 (143)
Q Consensus 141 vI~ 143 (143)
+|.
T Consensus 159 lil 161 (408)
T COG2081 159 LIL 161 (408)
T ss_pred EEE
Confidence 873
No 8
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.45 E-value=3.5e-13 Score=102.68 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=44.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC---CceeeeecCCCc--cCccCCcccc
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG---LTQTHLAMPQVE--LQPGLVLTAL 58 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~---~Gg~~~~~~~~~--~~~~g~~~~~ 58 (143)
|.++|+|||||++|+++|++|++.|++|+||||.+. .|..+...++.. +..+|+.+.+
T Consensus 1 ~~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l 63 (400)
T PRK06475 1 TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRL 63 (400)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHH
Confidence 568999999999999999999999999999999876 343344444432 4556665433
No 9
>PRK06753 hypothetical protein; Provisional
Probab=99.44 E-value=1.4e-13 Score=103.71 Aligned_cols=134 Identities=18% Similarity=0.129 Sum_probs=71.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCCc--cCccCCccccccccccceeeeeeccc---
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQVE--LQPGLVLTALSGQIYIGEIMNFREYP--- 74 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~--- 74 (143)
++|+|||||++|+++|+.|++.|++|+||||++.. |..+...++.. ++.+|+.+.+.....+...+.+.+..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~ 80 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTL 80 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCE
Confidence 58999999999999999999999999999998763 33333333331 34455532221111111111111100
Q ss_pred cCCCCCCCCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeecc---eEEEccCcEEEeeeEe
Q 038409 75 FLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDIIQ 142 (143)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~vI 142 (143)
+.... .......+..++.. +.+ .+... .....+++++++++++.++ .|+|.||+++++|+||
T Consensus 81 ~~~~~-~~~~~~~~~i~R~~--l~~-~L~~~--~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vi 145 (373)
T PRK06753 81 LNKVK-LKSNTLNVTLHRQT--LID-IIKSY--VKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCI 145 (373)
T ss_pred Eeecc-cccCCccccccHHH--HHH-HHHHh--CCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEE
Confidence 00000 00000000011100 000 01011 1223588888999986543 5789999999999998
No 10
>PRK07236 hypothetical protein; Provisional
Probab=99.44 E-value=2.2e-13 Score=103.35 Aligned_cols=133 Identities=16% Similarity=0.109 Sum_probs=71.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC----CceeeeecCCCc--cCccCCccccccccccceeeeeecccc
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG----LTQTHLAMPQVE--LQPGLVLTALSGQIYIGEIMNFREYPF 75 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~----~Gg~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~ 75 (143)
.++|+|||||++|+++|+.|++.|++|+||||++. .|+.....++.. ++.+|+.+.. ...++...+.+.+..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~~- 83 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLDRD- 83 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEeCC-
Confidence 46899999999999999999999999999999864 343333333331 3445554221 111111111111100
Q ss_pred CCCCCCCCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeecc---eEEEccCcEEEeeeEe
Q 038409 76 LARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDIIQ 142 (143)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~vI 142 (143)
... ............+. .+.+ .+... .....+++++++++++.++ .|+|+||+++++|+||
T Consensus 84 g~~-~~~~~~~~~~~~~~--~l~~-~L~~~--~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI 147 (386)
T PRK07236 84 GRV-VQRRPMPQTQTSWN--VLYR-ALRAA--FPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLV 147 (386)
T ss_pred CCE-eeccCCCccccCHH--HHHH-HHHHh--CCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEE
Confidence 000 00000000000000 0000 00011 1224588888899987543 5789999999999998
No 11
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.37 E-value=3.1e-12 Score=97.83 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=41.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCCC---ceeeeecCCCc--cCccCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREG-YLLVVFERAKGL---TQTHLAMPQVE--LQPGLVL 55 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~~---Gg~~~~~~~~~--~~~~g~~ 55 (143)
++|+|||||++||++|++|++.| ++|+||||++.+ |..+...++.. ++.+|+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~ 59 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLG 59 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCCh
Confidence 58999999999999999999998 599999998773 44444455442 4556654
No 12
>PRK06847 hypothetical protein; Provisional
Probab=99.37 E-value=1.9e-12 Score=97.64 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=32.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||||++|+++|+.|++.|++|+||||++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999999876
No 13
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.37 E-value=5.5e-12 Score=95.85 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC-C---CceeeeecCCC--ccCccCCcccccc-ccccceeeeeecc
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK-G---LTQTHLAMPQV--ELQPGLVLTALSG-QIYIGEIMNFREY 73 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~-~---~Gg~~~~~~~~--~~~~~g~~~~~~~-~~~~~~~~~~~~~ 73 (143)
+.++|+|||||++|+++|+.|++.|++|+|+||++ . .|-.....++. .+..+|+.+.+.. ...+...+.+.+-
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~ 80 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG 80 (387)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecC
Confidence 46799999999999999999999999999999983 2 33222333333 1456676222222 1212222222111
Q ss_pred -----ccCCCCCCCCCCCcCCCCceeeceEEEEEEeeec-----------cCCCCeEEcCceEEEeecc---eEEEc-cC
Q 038409 74 -----PFLARNDGTADPRRFRGHWETAGVAKVYIASKLV-----------AGYNNMLLYSMIESIHENG---SVVIR-IQ 133 (143)
Q Consensus 74 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~v~~~~~~~---~v~~~-dG 133 (143)
.|... ..... . ..+...+.. .+...+.++.+|+.++.++ .+++. ||
T Consensus 81 ~~~~~~~~~~--------~~~~~----~--~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG 146 (387)
T COG0654 81 GRRLLIFDAA--------ELGRG----A--LGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDG 146 (387)
T ss_pred CceeEEeccc--------ccCCC----c--ceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCC
Confidence 01110 00000 0 111111111 1224677788899987554 57788 99
Q ss_pred cEEEeeeEe
Q 038409 134 RVIFTDIIQ 142 (143)
Q Consensus 134 ~~~~aD~vI 142 (143)
++++||+||
T Consensus 147 ~~~~a~llV 155 (387)
T COG0654 147 ETLDADLLV 155 (387)
T ss_pred cEEecCEEE
Confidence 999999997
No 14
>PRK07538 hypothetical protein; Provisional
Probab=99.36 E-value=5.2e-12 Score=96.63 Aligned_cols=54 Identities=28% Similarity=0.330 Sum_probs=40.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCCc--cCccCCcc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQVE--LQPGLVLT 56 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~~--~~~~g~~~ 56 (143)
|+|+|||||++|+++|+.|++.|++|+||||++.. |..+...++.. +..+|+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~ 59 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLD 59 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHH
Confidence 58999999999999999999999999999998763 33333333331 34556543
No 15
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.36 E-value=2.2e-12 Score=99.59 Aligned_cols=65 Identities=28% Similarity=0.369 Sum_probs=51.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCCCceeeeecCCCccCccCCccccccccccceeeeeeccccC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFL 76 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (143)
.++|+|||||++||++|.+|++.|.+ ++||||++.+||.|.+.... ++. +.+ +.+.+.|+.+||.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~-----~l~--~~~---p~~~~~~~~~p~~ 73 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYP-----GLR--LDS---PKWLLGFPFLPFR 73 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCC-----ceE--ECC---chheeccCCCccC
Confidence 35899999999999999999999998 99999999999999865211 111 122 6667777777775
No 16
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.32 E-value=1.9e-11 Score=93.36 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=41.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC-----ceeeeecCCCc--cCccCCccc
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL-----TQTHLAMPQVE--LQPGLVLTA 57 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~-----Gg~~~~~~~~~--~~~~g~~~~ 57 (143)
.++|+|||||++|+++|+.|++.|++|+||||++.. |..+...++.. ++.+|+.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~ 80 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEK 80 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhh
Confidence 358999999999999999999999999999998763 33333333331 455676543
No 17
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.31 E-value=2.6e-11 Score=91.49 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=31.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+|+|||||++|+++|+.|++.|++|+||||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 5899999999999999999999999999998763
No 18
>PRK09126 hypothetical protein; Provisional
Probab=99.30 E-value=7.8e-12 Score=94.81 Aligned_cols=36 Identities=33% Similarity=0.534 Sum_probs=33.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|..+|+|||||++|+++|+.|++.|++|+||||.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 446899999999999999999999999999999865
No 19
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.29 E-value=3.1e-11 Score=91.54 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
.+|+|||||++|+++|++|++.|++|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 489999999999999999999999999999875
No 20
>PRK07045 putative monooxygenase; Reviewed
Probab=99.29 E-value=2e-11 Score=92.58 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=32.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.+|+|||||++|+++|+.|++.|++|+||||.+..
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 48999999999999999999999999999998763
No 21
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.29 E-value=1.5e-11 Score=93.60 Aligned_cols=36 Identities=36% Similarity=0.509 Sum_probs=34.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|.++|+|||||++|+++|+.|++.|++|+||||++.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 678999999999999999999999999999999874
No 22
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.28 E-value=5.3e-13 Score=92.53 Aligned_cols=38 Identities=37% Similarity=0.471 Sum_probs=32.3
Q ss_pred EEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCCCceeeee
Q 038409 6 ALIGAGTAGLGATRELSREGYL-LVVFERAKGLTQTHLA 43 (143)
Q Consensus 6 ~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~~Gg~~~~ 43 (143)
+|||||++||++|..|++.|.+ ++|+||.+.+||.|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 6999999999999999999999 9999999999999984
No 23
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.26 E-value=3.8e-11 Score=91.29 Aligned_cols=36 Identities=42% Similarity=0.481 Sum_probs=33.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|..+|+|||||++|+++|+.|++.|++|+|+||++.
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 678999999999999999999999999999999874
No 24
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.26 E-value=8e-13 Score=100.92 Aligned_cols=138 Identities=18% Similarity=0.172 Sum_probs=68.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc--------eeeeecC-CCccCcc----CCc-cccccccc---cc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT--------QTHLAMP-QVELQPG----LVL-TALSGQIY---IG 65 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G--------g~~~~~~-~~~~~~~----g~~-~~~~~~~~---~~ 65 (143)
.+|+|||||++||+||+.|++.|.+|+|+||++.+| |.+++++ +...... +-. ..+...+. +.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 379999999999999999999999999999998865 7788776 3321111 000 01111100 22
Q ss_pred eeeee-eccccCCCCCCCCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeec--c--eEEEccCcEEEeee
Q 038409 66 EIMNF-REYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHEN--G--SVVIRIQRVIFTDI 140 (143)
Q Consensus 66 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~--~--~v~~~dG~~~~aD~ 140 (143)
++..| .....+.. ...+.+.||...++..+.+++ ...+......++++.+|.++..+ + .|.++++.++.||.
T Consensus 81 d~~~ff~~~Gv~~~--~~~~gr~fP~s~~a~~Vv~~L-~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 81 DLIAFFEELGVPTK--IEEDGRVFPKSDKASSVVDAL-LEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp HHHHHHHHTT--EE--E-STTEEEETT--HHHHHHHH-HHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred HHHHHHHhcCCeEE--EcCCCEECCCCCcHHHHHHHH-HHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 22211 11100000 122356677665432221111 11111234578888889998642 2 47777888999999
Q ss_pred EeC
Q 038409 141 IQH 143 (143)
Q Consensus 141 vI~ 143 (143)
||.
T Consensus 158 vIL 160 (409)
T PF03486_consen 158 VIL 160 (409)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
No 25
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.25 E-value=3.2e-11 Score=96.70 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=32.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
.++|+|||||++||++|++|++.|++|+||||.+
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3689999999999999999999999999999975
No 26
>PRK08244 hypothetical protein; Provisional
Probab=99.25 E-value=1e-11 Score=97.08 Aligned_cols=57 Identities=28% Similarity=0.342 Sum_probs=42.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCC--ccCccCCccc
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQV--ELQPGLVLTA 57 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~--~~~~~g~~~~ 57 (143)
|..+|+|||||++|+++|+.|++.|++|+|+||++.. +......++. .++.+|+.+.
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~ 62 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLER 62 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHH
Confidence 5679999999999999999999999999999998763 2222223332 1456676543
No 27
>PRK08013 oxidoreductase; Provisional
Probab=99.24 E-value=9.5e-11 Score=89.41 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=32.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||++|+++|+.|++.|++|+|+||.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5899999999999999999999999999999876
No 28
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.24 E-value=7.2e-11 Score=89.80 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=31.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~ 36 (143)
+.+|+|||||++|+++|+.|++.| ++|+|+||++.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 368999999999999999999995 99999999865
No 29
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.24 E-value=3.5e-11 Score=91.78 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
|..+|+|||||++|+++|+.|++.|++|+|+|+.+
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 55789999999999999999999999999999986
No 30
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.22 E-value=9.9e-11 Score=88.48 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=31.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409 4 HAALIGAGTAGLGATRELSREG-YLLVVFERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~ 36 (143)
+|+|||||++|+++|+.|++.| ++|+||||.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 5899999999999999999999 99999999865
No 31
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.22 E-value=1.7e-11 Score=71.10 Aligned_cols=36 Identities=39% Similarity=0.638 Sum_probs=33.2
Q ss_pred EEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 7 LIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 7 IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
|||||++||++|..|++.|++|+|||+.+.+||.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 899999999999999999999999999999998765
No 32
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.22 E-value=9e-11 Score=88.79 Aligned_cols=34 Identities=18% Similarity=0.446 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+.+|+|||||++|+++|++|++.|++|+|+|+.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 3689999999999999999999999999999863
No 33
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.19 E-value=1.5e-10 Score=88.39 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=30.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
.+|+|||||++|+++|++|++.|++|+|+|+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 48999999999999999999999999999996
No 34
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.17 E-value=3e-10 Score=86.05 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=33.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
|..+|+|||||++|+++|+.|++.|++|+|+||.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 4568999999999999999999999999999998763
No 35
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.17 E-value=2.6e-11 Score=91.00 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=33.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
++.+|+|||||++|+++|.+|.++|++|+|||++..+
T Consensus 1 ~~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 1 KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 3579999999999999999999999999999997663
No 36
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.16 E-value=4.8e-11 Score=88.56 Aligned_cols=34 Identities=38% Similarity=0.619 Sum_probs=30.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||++|+++|+.|++.|++|+||||++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 4799999999999999999999999999999876
No 37
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.13 E-value=2.8e-10 Score=89.96 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
..+|+|||||++|+++|+.|++.|++|+||||.+..
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~ 45 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 468999999999999999999999999999998763
No 38
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.12 E-value=6.9e-10 Score=84.33 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=32.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||++|+++|+.|++.|++|+|+||.+.
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 6899999999999999999999999999999764
No 39
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.12 E-value=2.2e-10 Score=86.87 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=31.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHC---CCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSRE---GYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~---g~~v~v~Er~ 34 (143)
..+|+|||||++|+++|+.|++. |++|+||||.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 46899999999999999999998 9999999995
No 40
>PRK06184 hypothetical protein; Provisional
Probab=99.12 E-value=8.3e-11 Score=92.17 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=32.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.+|+|||||++|+++|+.|++.|++|+|+||++..
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 58999999999999999999999999999998763
No 41
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=1.3e-10 Score=90.75 Aligned_cols=41 Identities=32% Similarity=0.456 Sum_probs=38.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
.++|+|||||++||+||..|++.|++|+|+|.++.+||...
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence 46899999999999999999999999999999999998865
No 42
>PRK06834 hypothetical protein; Provisional
Probab=99.09 E-value=1.7e-10 Score=90.22 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=32.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||++|+++|+.|++.|++|+|+||.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5899999999999999999999999999999865
No 43
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.08 E-value=2e-10 Score=87.09 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=31.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+|+|||||++|+++|+.|++.|++|+|+||.+..
T Consensus 9 dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 9 DIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 7999999999999999999999999999998653
No 44
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.08 E-value=9.5e-10 Score=83.29 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=33.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCce
Q 038409 4 HAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLTQ 39 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~Gg 39 (143)
+|+|||||++|+++|..|++. |++|.++|+++..++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 589999999999999999987 999999999887765
No 45
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.06 E-value=2.6e-10 Score=87.82 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=37.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~Gg~~~ 42 (143)
|+|+|||||++||+||..|++.| ++|+|||+++.+||.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence 58999999999999999999987 89999999999998754
No 46
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.04 E-value=1.8e-09 Score=81.90 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=32.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
..+|+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 35899999999999999999999999999999753
No 47
>PRK06126 hypothetical protein; Provisional
Probab=99.01 E-value=1.6e-09 Score=85.69 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=32.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||++|+++|+.|++.|++|+||||.+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 5899999999999999999999999999999865
No 48
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.00 E-value=2.7e-09 Score=84.55 Aligned_cols=36 Identities=25% Similarity=0.511 Sum_probs=33.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
..+|+|||||++|+++|+.|++.|++|+|+||++..
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 358999999999999999999999999999998764
No 49
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.99 E-value=7.6e-10 Score=80.75 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=34.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
.+|+|||||++|+++|..|++.|++|+|+|+.+ .||.|.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~ 39 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT 39 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee
Confidence 479999999999999999999999999999875 676655
No 50
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.99 E-value=4.4e-09 Score=81.23 Aligned_cols=32 Identities=16% Similarity=0.462 Sum_probs=30.0
Q ss_pred cEEEEcCCHHHHHHHHHHHH----CCCeEEEEeeCC
Q 038409 4 HAALIGAGTAGLGATRELSR----EGYLLVVFERAK 35 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~----~g~~v~v~Er~~ 35 (143)
+|+|||||++|+++|++|++ .|++|+|+|+++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 79999999999999999998 899999999953
No 51
>PLN02268 probable polyamine oxidase
Probab=98.99 E-value=7.3e-10 Score=85.31 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=37.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
++|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 4899999999999999999999999999999999998764
No 52
>PRK07208 hypothetical protein; Provisional
Probab=98.99 E-value=7.9e-10 Score=86.06 Aligned_cols=41 Identities=34% Similarity=0.459 Sum_probs=38.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
.++|+|||||++||++|..|+++|++|+|+|+++.+||.+.
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISR 44 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 46899999999999999999999999999999999998764
No 53
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=7e-10 Score=85.52 Aligned_cols=40 Identities=35% Similarity=0.512 Sum_probs=37.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
|||+|+|||++||++|..|+++|++|+|||+++.+||...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceee
Confidence 6899999999999999999999999999999999996643
No 54
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.98 E-value=9.6e-10 Score=86.00 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=37.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
.++|+|||||++||++|..|+++|++|+||||+..+||..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcce
Confidence 4799999999999999999999999999999999999753
No 55
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.97 E-value=7.6e-10 Score=77.18 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=36.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc-eeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT-QTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G-g~~~ 42 (143)
.+|+|||||++||+||+.|+++|.+|+||||+-.+| |.|.
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~ 71 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG 71 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc
Confidence 479999999999999999999999999999998876 6665
No 56
>PRK06185 hypothetical protein; Provisional
Probab=98.96 E-value=3.7e-09 Score=80.62 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=32.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
..+|+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 46899999999999999999999999999999764
No 57
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.95 E-value=1.2e-09 Score=84.84 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=36.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHC------CCeEEEEeeCCCCceeee
Q 038409 2 SCHAALIGAGTAGLGATRELSRE------GYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~------g~~v~v~Er~~~~Gg~~~ 42 (143)
|++|+|||||++||++|..|++. |.+|+|||+++.+||...
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 47899999999999999999986 379999999999998754
No 58
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.95 E-value=1.4e-09 Score=90.61 Aligned_cols=43 Identities=28% Similarity=0.323 Sum_probs=40.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+|+|+|||||++||++|..|++.|++|+|||+.+.+||.+.|.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG 348 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG 348 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc
Confidence 5899999999999999999999999999999999999998875
No 59
>PRK07233 hypothetical protein; Provisional
Probab=98.95 E-value=1.3e-09 Score=83.55 Aligned_cols=38 Identities=34% Similarity=0.530 Sum_probs=36.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
+|+|||||++||++|..|+++|++|+|||+++.+||.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 68999999999999999999999999999999999865
No 60
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.94 E-value=1.4e-09 Score=84.20 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=38.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeeCCCCceeee
Q 038409 2 SCHAALIGAGTAGLGATRELSRE----GYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~----g~~v~v~Er~~~~Gg~~~ 42 (143)
+++|+|||||++||++|..|+++ |++|+|||+++.+||.+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 47899999999999999999998 999999999999998754
No 61
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.93 E-value=1.4e-09 Score=87.45 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=41.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHH-CCCeEEEEeeCCC---CceeeeecCCC--ccCccCCcccc
Q 038409 3 CHAALIGAGTAGLGATRELSR-EGYLLVVFERAKG---LTQTHLAMPQV--ELQPGLVLTAL 58 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~Er~~~---~Gg~~~~~~~~--~~~~~g~~~~~ 58 (143)
.+|+|||||++||++|+.|++ .|++|+|+||++. .|-.....++. .++.+|+.+.+
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l 94 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERI 94 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHH
Confidence 489999999999999999999 4999999999875 34222333333 25667765433
No 62
>PRK07190 hypothetical protein; Provisional
Probab=98.90 E-value=1e-08 Score=80.33 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=32.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.+|+|||||++|+++|+.|++.|++|+|+||.+..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 47999999999999999999999999999998764
No 63
>PLN02576 protoporphyrinogen oxidase
Probab=98.90 E-value=2.5e-09 Score=83.67 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=37.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSRE-GYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~~~~Gg~~~ 42 (143)
++|+|||||++||++|..|++. |++|+|||+++.+||...
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence 5899999999999999999999 999999999999998754
No 64
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.88 E-value=3.3e-09 Score=76.12 Aligned_cols=40 Identities=35% Similarity=0.541 Sum_probs=37.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
..|+|||+|++|+++|..|++.|.+|+||||+..+||...
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlA 41 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLA 41 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchh
Confidence 4699999999999999999999999999999988888765
No 65
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.88 E-value=4.2e-09 Score=82.24 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=39.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHH--CCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSR--EGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~--~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||||++|+.+|..|++ .|++|+|||+.+.+||.+.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~g 70 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSG 70 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeec
Confidence 5789999999999999999987 699999999999999988875
No 66
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.86 E-value=3.9e-09 Score=81.23 Aligned_cols=40 Identities=30% Similarity=0.442 Sum_probs=37.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~Gg~~~ 42 (143)
|+|+|||||++||++|..|++++ .+++|||+.+.+||...
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 58999999999999999999999 89999999999998765
No 67
>PRK06996 hypothetical protein; Provisional
Probab=98.85 E-value=4e-08 Score=75.02 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=30.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCC----CeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREG----YLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g----~~v~v~Er~~~ 36 (143)
..+|+|||||++|+++|+.|++.| .+|+|+|+.+.
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 458999999999999999999987 47999999753
No 68
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.85 E-value=4.4e-09 Score=82.29 Aligned_cols=38 Identities=32% Similarity=0.490 Sum_probs=35.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT 40 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~ 40 (143)
++|+|||||++||++|..|+++|++|+|||+++.+||.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~ 39 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGC 39 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 68999999999999999999999999999999988864
No 69
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.84 E-value=3.8e-09 Score=82.80 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=35.1
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 5 AALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 5 v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
|+|||||++||++|..|+++|++|+|+|+++.+||...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceE
Confidence 68999999999999999999999999999999987643
No 70
>PRK12831 putative oxidoreductase; Provisional
Probab=98.82 E-value=8.5e-09 Score=80.29 Aligned_cols=43 Identities=28% Similarity=0.428 Sum_probs=39.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g 182 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG 182 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec
Confidence 5789999999999999999999999999999988899888653
No 71
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.82 E-value=5.5e-08 Score=73.82 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=31.1
Q ss_pred cEEEEcCCHHHHHHHHHH--HHCCCeEEEEeeCCCC
Q 038409 4 HAALIGAGTAGLGATREL--SREGYLLVVFERAKGL 37 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L--~~~g~~v~v~Er~~~~ 37 (143)
+|+|||||++|+++|..| ++.|.+|+|+|+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 589999999999999999 7779999999998765
No 72
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.81 E-value=6.3e-09 Score=79.42 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=36.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ 39 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg 39 (143)
|.++|+|||||++|++||+.|++.|.+|.++||.+.+|.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~ 40 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGA 40 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 567999999999999999999999999999999888773
No 73
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.81 E-value=6.1e-09 Score=80.66 Aligned_cols=38 Identities=32% Similarity=0.419 Sum_probs=35.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
+|+|||||++||++|..|+++|++|+|||+++.+||..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCc
Confidence 58999999999999999999999999999999998864
No 74
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.80 E-value=9.7e-09 Score=83.00 Aligned_cols=43 Identities=30% Similarity=0.440 Sum_probs=40.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g 369 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG 369 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec
Confidence 5799999999999999999999999999999999999888764
No 75
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.80 E-value=1.1e-08 Score=79.49 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=39.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHH-HCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELS-REGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~-~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||||++|+.+|..|. +.|++|+||||.+.+||.+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 468999999999999999765 6799999999999999999876
No 76
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.80 E-value=5.1e-09 Score=73.08 Aligned_cols=40 Identities=33% Similarity=0.410 Sum_probs=32.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce-eee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ-THL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg-~~~ 42 (143)
.+|+|||||++||++|..|++.|.+|.+|||+..+|| .|.
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 5799999999999999999999999999999988773 443
No 77
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.79 E-value=1.1e-08 Score=85.50 Aligned_cols=42 Identities=36% Similarity=0.435 Sum_probs=38.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
+++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 468999999999999999999999999999999999988754
No 78
>PLN02568 polyamine oxidase
Probab=98.77 E-value=1.3e-08 Score=80.48 Aligned_cols=40 Identities=30% Similarity=0.378 Sum_probs=36.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC-----CeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREG-----YLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g-----~~v~v~Er~~~~Gg~~~ 42 (143)
++|+|||||++||++|..|++.| ++|+|||+++.+||.+.
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 46999999999999999999887 89999999999998764
No 79
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.75 E-value=1.4e-08 Score=84.36 Aligned_cols=43 Identities=30% Similarity=0.492 Sum_probs=41.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||+|++||++|-.|-+.||.|+||||++.+||+..|+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg 1827 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG 1827 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec
Confidence 6899999999999999999999999999999999999999887
No 80
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.75 E-value=1.8e-08 Score=77.13 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=35.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~~Gg~~~ 42 (143)
.+|+|||||+|||+||..|.+.|+ +++|||..+.+||.+.
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 579999999999999999997765 8999999999998754
No 81
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.74 E-value=1.9e-08 Score=72.68 Aligned_cols=38 Identities=34% Similarity=0.566 Sum_probs=35.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ 39 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg 39 (143)
..+|+|||||++|+++|+.|++.|++|+|+|+.+.+||
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Gg 62 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 35899999999999999999999999999999988764
No 82
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.74 E-value=1.9e-08 Score=81.15 Aligned_cols=43 Identities=37% Similarity=0.472 Sum_probs=40.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||+|++||++|..|++.|++|+|||+.+.+||.+.|.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g 352 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG 352 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc
Confidence 5899999999999999999999999999999999999988764
No 83
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.74 E-value=1.8e-08 Score=84.08 Aligned_cols=42 Identities=38% Similarity=0.467 Sum_probs=39.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
+|+|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 579999999999999999999999999999999989988754
No 84
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.72 E-value=2.7e-08 Score=77.19 Aligned_cols=43 Identities=33% Similarity=0.387 Sum_probs=39.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
.++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g 175 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG 175 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec
Confidence 4689999999999999999999999999999998899887664
No 85
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.72 E-value=2.2e-08 Score=78.16 Aligned_cols=38 Identities=29% Similarity=0.417 Sum_probs=35.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
+|+|||||++|+++|..|++.|++|+|||+++.+||..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 38 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKV 38 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCcee
Confidence 58999999999999999999999999999999988754
No 86
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.71 E-value=2.8e-08 Score=81.56 Aligned_cols=43 Identities=30% Similarity=0.448 Sum_probs=39.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.|.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g 473 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG 473 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec
Confidence 4789999999999999999999999999999988899888764
No 87
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.70 E-value=2.8e-08 Score=71.69 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=35.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc-eee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT-QTH 41 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G-g~~ 41 (143)
..+|+|||||++|+++|+.|++.|.+|+|+||...+| +.|
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~ 61 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW 61 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 3589999999999999999999999999999998876 444
No 88
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.69 E-value=2.7e-08 Score=83.69 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=38.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
+++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 478999999999999999999999999999999889987655
No 89
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.69 E-value=3.5e-08 Score=74.87 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=37.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.+|+|||||++|+++|..|++.|.+|+|+|+++.+||.+.+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 58999999999999999999999999999999989986543
No 90
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.69 E-value=2.6e-08 Score=78.69 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=36.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeeCCCCceeee
Q 038409 2 SCHAALIGAGTAGLGATRELSRE----GYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~----g~~v~v~Er~~~~Gg~~~ 42 (143)
.++|+|||||++||++|..|.+. |.+|+|||+.+.+||.+.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 46899999999999999999986 679999999999997754
No 91
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.69 E-value=2.9e-08 Score=77.81 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=36.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
+|+|||||++||++|..|+++|++|+|+||++.+||...
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAG 40 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence 689999999999999999999999999999999886643
No 92
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.68 E-value=2.9e-08 Score=77.08 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=38.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
.+|+|||||++|+++|..|++.|.+|+++|+.+.+||.|.+.
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~ 47 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT 47 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence 479999999999999999999999999999988899998643
No 93
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.68 E-value=4.1e-08 Score=76.60 Aligned_cols=43 Identities=35% Similarity=0.482 Sum_probs=39.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g 185 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG 185 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec
Confidence 4789999999999999999999999999999999999887653
No 94
>PLN02487 zeta-carotene desaturase
Probab=98.68 E-value=3.2e-08 Score=78.69 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=36.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
++|+|||||++||++|+.|.+.|++|+|||+++.+||.+
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence 599999999999999999999999999999999988643
No 95
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.68 E-value=3e-08 Score=76.22 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=37.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
.++++|||||++|++||+.|+..|+++.++|+.+++||..
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrm 163 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRM 163 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccH
Confidence 5789999999999999999999999999999999999873
No 96
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.67 E-value=4.2e-08 Score=79.32 Aligned_cols=43 Identities=30% Similarity=0.332 Sum_probs=40.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g 235 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG 235 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec
Confidence 4789999999999999999999999999999999999888764
No 97
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.67 E-value=3.4e-08 Score=76.59 Aligned_cols=44 Identities=41% Similarity=0.415 Sum_probs=41.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMP 45 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~ 45 (143)
+++|+|||||++||++|..|.+.|++|++||+.+..||...|+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGI 166 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGI 166 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecC
Confidence 47899999999999999999999999999999999999998873
No 98
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.66 E-value=4.5e-08 Score=76.06 Aligned_cols=42 Identities=36% Similarity=0.495 Sum_probs=39.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
+++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~ 181 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY 181 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec
Confidence 578999999999999999999999999999999999887765
No 99
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.66 E-value=5.2e-08 Score=75.96 Aligned_cols=43 Identities=35% Similarity=0.456 Sum_probs=39.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||+|++|+++|..|++.|++|++||+.+.+||.+.+.
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g 183 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG 183 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec
Confidence 4789999999999999999999999999999999999887654
No 100
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.65 E-value=4.4e-08 Score=74.74 Aligned_cols=41 Identities=32% Similarity=0.572 Sum_probs=37.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
..+|+|||||.+||++|..|++.|++|+|+|.++.+||...
T Consensus 7 ~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 7 TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeE
Confidence 35899999999999999999999999999999999987643
No 101
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.65 E-value=5e-08 Score=70.88 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=32.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLT 38 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G 38 (143)
+|+|||||++|+++|+.|++.|++|+|+||++..+
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~ 36 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR 36 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence 79999999999999999999999999999987654
No 102
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.64 E-value=5.1e-08 Score=75.96 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=38.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
.+|+|||+|++|+++|..+++.|.+|+|+|+++.+||+|.+.
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~ 45 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV 45 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC
Confidence 489999999999999999999999999999878899987543
No 103
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.64 E-value=4.7e-08 Score=74.49 Aligned_cols=38 Identities=26% Similarity=0.480 Sum_probs=34.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409 1 MSCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT 38 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G 38 (143)
|+.+|+|||||++|+++|+.|++. |++|+|+||...+|
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 667999999999999999999998 99999999986543
No 104
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.64 E-value=4.8e-08 Score=75.82 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=32.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|..+|+|||||++|+++|..|++.|++|+|+||.+.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 356899999999999999999999999999999753
No 105
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.63 E-value=4.8e-08 Score=65.48 Aligned_cols=31 Identities=32% Similarity=0.528 Sum_probs=27.4
Q ss_pred EEEcCCHHHHHHHHHHHHC-----CCeEEEEeeCCC
Q 038409 6 ALIGAGTAGLGATRELSRE-----GYLLVVFERAKG 36 (143)
Q Consensus 6 ~IIGaG~~Gl~~A~~L~~~-----g~~v~v~Er~~~ 36 (143)
+|||+|++|++++..|.+. ..+++|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 6999999999999999977 469999999655
No 106
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.63 E-value=5.5e-08 Score=74.36 Aligned_cols=34 Identities=38% Similarity=0.717 Sum_probs=32.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||||+.|+++|+.|++.|.+|+|+||.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999864
No 107
>PLN02529 lysine-specific histone demethylase 1
Probab=98.63 E-value=5.5e-08 Score=79.18 Aligned_cols=41 Identities=32% Similarity=0.437 Sum_probs=37.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
.++|+|||||++|+++|..|++.|++|+|||+++.+||.+.
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 36899999999999999999999999999999988887654
No 108
>PLN02676 polyamine oxidase
Probab=98.63 E-value=5e-08 Score=76.43 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=36.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCCCceeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKGLTQTHL 42 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~~Gg~~~ 42 (143)
.++|+|||||++||++|..|++.|+ +|+|+|+++.+||.+.
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~ 67 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMR 67 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcce
Confidence 3589999999999999999999998 6999999999887654
No 109
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.62 E-value=6.3e-08 Score=74.74 Aligned_cols=36 Identities=39% Similarity=0.518 Sum_probs=33.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G 38 (143)
.+|+|||||++|+++|+.|+++|++|+|+||.+.+|
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g 41 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG 41 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 589999999999999999999999999999987654
No 110
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=98.62 E-value=5.8e-08 Score=73.59 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=36.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeE--EEEeeCCCCceeee
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLL--VVFERAKGLTQTHL 42 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v--~v~Er~~~~Gg~~~ 42 (143)
++++|+|+|||++||++|..|++.+.++ ++||..+.+||-+.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 4689999999999999999999997755 66999999987543
No 111
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.61 E-value=6.3e-08 Score=74.26 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=34.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
|+++|+|||||++|+.+|++|++.|++|+|+|+++..
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 6789999999999999999999999999999987654
No 112
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.60 E-value=3.6e-08 Score=73.12 Aligned_cols=39 Identities=33% Similarity=0.436 Sum_probs=34.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
+++|+|||+|++||+||..|++. ++||+||....+||.-
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha 46 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHA 46 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcc
Confidence 46999999999999999999877 8999999988888653
No 113
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.60 E-value=7.2e-08 Score=71.57 Aligned_cols=31 Identities=42% Similarity=0.707 Sum_probs=30.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+|+|||||++|+++|+.|++.|++|+|+|+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 5899999999999999999999999999998
No 114
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.60 E-value=1.3e-07 Score=72.71 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=39.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHC---CCeEEEEeeCCCCceeeeecCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSRE---GYLLVVFERAKGLTQTHLAMPQV 47 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~---g~~v~v~Er~~~~Gg~~~~~~~~ 47 (143)
+++|+|||+|++|+.+|.+|.+. ...+.|||+.+..|....|++..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~ 49 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEE 49 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCC
Confidence 47999999999999999999975 12399999999999888887544
No 115
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.59 E-value=8.2e-08 Score=74.62 Aligned_cols=42 Identities=29% Similarity=0.386 Sum_probs=37.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
..+|+|||||++|+++|..|++.|++|+++|+.. +||+|.+.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~ 45 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR 45 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec
Confidence 3589999999999999999999999999999876 99988643
No 116
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.59 E-value=7.4e-08 Score=79.00 Aligned_cols=41 Identities=32% Similarity=0.427 Sum_probs=37.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
.++|+|||||++|+++|..|.+.|++|+|+|++..+||...
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence 36899999999999999999999999999999988887643
No 117
>PRK10015 oxidoreductase; Provisional
Probab=98.58 E-value=9.5e-08 Score=73.76 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=33.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G 38 (143)
.+|+|||||++|+++|+.|++.|++|+|+||.+..|
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999987654
No 118
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.58 E-value=1.2e-07 Score=75.49 Aligned_cols=43 Identities=33% Similarity=0.395 Sum_probs=39.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||+|++||++|..|++.|++|++||+.+.+||.+.+.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g 179 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG 179 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec
Confidence 5789999999999999999999999999999999999887654
No 119
>PRK14727 putative mercuric reductase; Provisional
Probab=98.57 E-value=1.1e-07 Score=74.26 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=39.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
..+|+|||+|++|+++|..|++.|.+|+++|+.+.+||+|.+.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~ 58 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV 58 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc
Confidence 3589999999999999999999999999999988899999754
No 120
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.57 E-value=1.2e-07 Score=73.71 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=37.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
.+|+|||||++|+.+|..|++.|.+|+|+|+ +.+||+|...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~ 42 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNV 42 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeec
Confidence 5899999999999999999999999999999 7899988743
No 121
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.56 E-value=9e-08 Score=78.71 Aligned_cols=44 Identities=20% Similarity=0.136 Sum_probs=36.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC---CceeeeecCC
Q 038409 3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG---LTQTHLAMPQ 46 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~---~Gg~~~~~~~ 46 (143)
|+|+|||||++|+++|+.|++. |++|+||||++. .|..+.++++
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~ 49 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDA 49 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHH
Confidence 5899999999999999999998 899999999876 4544444443
No 122
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.56 E-value=1.4e-07 Score=72.97 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=36.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC-Cceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG-LTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~-~Gg~~~ 42 (143)
.+|+|||||++|+++|..|++.|++|+|+|+.+. +||+|.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 5899999999999999999999999999999865 698875
No 123
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.56 E-value=1.2e-07 Score=73.85 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=36.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.+|+|||||++|+++|..|++.|.+|+|+|+.+ +||+|.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n 40 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN 40 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence 379999999999999999999999999999865 8998764
No 124
>PRK06116 glutathione reductase; Validated
Probab=98.56 E-value=8.7e-08 Score=74.29 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=36.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.+|+|||||++|+++|..|++.|++|+|+|+. .+||+|..
T Consensus 5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN 44 (450)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence 47999999999999999999999999999984 78998753
No 125
>PRK14694 putative mercuric reductase; Provisional
Probab=98.56 E-value=1.1e-07 Score=74.04 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=37.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.+|+|||||++|+++|..|++.|.+|+|+|+. .+||+|..
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 47999999999999999999999999999985 68999875
No 126
>PLN02612 phytoene desaturase
Probab=98.56 E-value=1.1e-07 Score=75.74 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=36.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT 40 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~ 40 (143)
+++|+|||||++||++|..|++.|+++++||+++.+||.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 468999999999999999999999999999999887765
No 127
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.56 E-value=1.2e-07 Score=71.76 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=33.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|.++|+|||||+.|+++|+.|+++|.+|+++|+...
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 457999999999999999999999999999998765
No 128
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.55 E-value=1.1e-07 Score=72.76 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=32.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
++|+|||||++|+++|+.|++.|++|+|+||.+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~ 35 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN 35 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 48999999999999999999999999999997653
No 129
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.55 E-value=1.2e-07 Score=73.97 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=38.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+||+|..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n 45 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN 45 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence 358999999999999999999999999999998889998754
No 130
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.55 E-value=1.3e-07 Score=73.29 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=37.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.+|+|||||++|+++|+.+++.|++|+|+|+ ..+||+|..
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 5899999999999999999999999999998 579999874
No 131
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.54 E-value=1.7e-07 Score=72.53 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=37.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC-Cceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG-LTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~-~Gg~~~~ 43 (143)
.+|+|||||++|+++|..|++.|.+|+|+|+.+. +||+|..
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 4899999999999999999999999999999764 8998863
No 132
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.54 E-value=1.4e-07 Score=73.20 Aligned_cols=40 Identities=33% Similarity=0.433 Sum_probs=37.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.+|+|||||++|+++|..|++.|.+|+|+|+ ..+||.|.+
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~ 43 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN 43 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence 4899999999999999999999999999999 678998864
No 133
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.54 E-value=1.2e-07 Score=71.98 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=33.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT 40 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~ 40 (143)
+|+|||||++|+++|..|++.|++|+|+|+.+..++.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 5899999999999999999999999999998877653
No 134
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.2e-07 Score=67.86 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=30.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCCCcee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAKGLTQT 40 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~~Gg~ 40 (143)
..+|+|||||++||+||+.+.+.+.+ +.|+|+ ...||.
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~ 41 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQ 41 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCc
Confidence 35899999999999999999999998 666665 444533
No 135
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.53 E-value=1.2e-07 Score=78.75 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=32.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+|+|+|||+|++|+++|..|++.|++|++||+.+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 5799999999999999999999999999999854
No 136
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.53 E-value=1.3e-07 Score=71.32 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=32.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
..+|+|||||+.|+++|+.|++.|++|+|+||...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 45899999999999999999999999999999754
No 137
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.53 E-value=1.3e-07 Score=73.47 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=36.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.+|+|||||++|+++|..|++.|.+|+|+|+. .+||+|..
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~ 42 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVN 42 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceec
Confidence 58999999999999999999999999999984 68998864
No 138
>PRK10262 thioredoxin reductase; Provisional
Probab=98.53 E-value=1.6e-07 Score=69.66 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=35.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.++|+|||||++||++|..|++.|++++++|+. ..||.+..
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 468999999999999999999999999999964 56776543
No 139
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.53 E-value=1.6e-07 Score=73.20 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=37.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
.+|+|||||++|+++|..|++.|.+|+|+|+. .+||+|...
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~ 45 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK 45 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC
Confidence 57999999999999999999999999999985 789998643
No 140
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.52 E-value=1.5e-07 Score=71.93 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=32.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
|+|+|||||+.|+++|..|++.|++|+|+|+...+
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~ 35 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP 35 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence 48999999999999999999999999999997543
No 141
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.51 E-value=2.2e-07 Score=72.78 Aligned_cols=43 Identities=33% Similarity=0.473 Sum_probs=38.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g 185 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG 185 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc
Confidence 4789999999999999999999999999999998888876553
No 142
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.51 E-value=1.4e-07 Score=72.86 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=32.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
+|+|||||++|++||+++++.|.+|.|+|+.+.+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 589999999999999999999999999999999987654
No 143
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=1.9e-07 Score=68.59 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=37.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
+.+.+|||||++|+.+|..|++.|.+|.|+||++.+||.+-
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccc
Confidence 35889999999999999999999999999999999998764
No 144
>PRK13748 putative mercuric reductase; Provisional
Probab=98.50 E-value=1.7e-07 Score=74.45 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=37.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
.+|+|||||++|+++|..|++.|.+|.|+|+. .+||+|.+.
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~ 139 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNV 139 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecccc
Confidence 58999999999999999999999999999986 899998653
No 145
>PTZ00367 squalene epoxidase; Provisional
Probab=98.50 E-value=1.7e-07 Score=74.64 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
.+|+|||||++|+++|++|++.|++|+|+||.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 489999999999999999999999999999976
No 146
>PLN02985 squalene monooxygenase
Probab=98.50 E-value=2e-07 Score=73.56 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=31.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||++|+++|.+|++.|++|+|+||.+.
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 5799999999999999999999999999999754
No 147
>PRK06370 mercuric reductase; Validated
Probab=98.49 E-value=2.2e-07 Score=72.32 Aligned_cols=41 Identities=29% Similarity=0.332 Sum_probs=36.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
.+|+|||+|++|+++|..|++.|++|+|+|+. .+||.|.+.
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~ 46 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNT 46 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceecc
Confidence 48999999999999999999999999999985 678887643
No 148
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.49 E-value=1.7e-07 Score=71.29 Aligned_cols=32 Identities=38% Similarity=0.624 Sum_probs=30.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
.+|+|||||++|+++|+.|++.|++|+++|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 37999999999999999999999999999997
No 149
>PRK11445 putative oxidoreductase; Provisional
Probab=98.49 E-value=1.8e-07 Score=70.39 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+.+|+|||||++|+++|+.|++. ++|+++||.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 36899999999999999999999 99999999875
No 150
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.49 E-value=2.7e-07 Score=73.40 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=35.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.+|+|||||++|+++|..|++.|++|+|||+. ..||.+..
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 58999999999999999999999999999985 67877654
No 151
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.47 E-value=1.5e-07 Score=72.08 Aligned_cols=39 Identities=33% Similarity=0.528 Sum_probs=34.4
Q ss_pred EEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 6 ALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 6 ~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+|||||++|+++|+.|++.|.+|+|+||++.+|+.+..+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~s 39 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLIS 39 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccccccc
Confidence 599999999999999999999999999998887654433
No 152
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.46 E-value=3.9e-07 Score=68.56 Aligned_cols=42 Identities=33% Similarity=0.426 Sum_probs=38.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
+++|+|||+|++|+.+|..|++.|++++++|+.+.+||.+.+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~ 59 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF 59 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence 468999999999999999999999999999999888877643
No 153
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.46 E-value=2.7e-07 Score=69.71 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||+.|+++|+.|+++|.+|+|+|+...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 3799999999999999999999999999999653
No 154
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.43 E-value=3.8e-07 Score=76.90 Aligned_cols=42 Identities=26% Similarity=0.479 Sum_probs=38.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
++|+|||||++||++|+.|++.|++|+|+|+.+.+||.+.+.
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~ 205 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSE 205 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecc
Confidence 589999999999999999999999999999999999887653
No 155
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.42 E-value=3.2e-07 Score=70.30 Aligned_cols=37 Identities=30% Similarity=0.480 Sum_probs=32.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT 40 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~ 40 (143)
+|+|||+|.+|++||+.+++.|.+|+|+|+.+..||.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~ 37 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGS 37 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccc
Confidence 5899999999999999999999999999998886653
No 156
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.41 E-value=3.8e-07 Score=73.94 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=31.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||||++|+++|+.|+++|++|+|+||...
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4899999999999999999999999999999754
No 157
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.41 E-value=3.7e-07 Score=71.02 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=35.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
|+|+|||+|++|+++|..+++.|.+|+|+||. .+||+|.+
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n 40 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLN 40 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCC
Confidence 38999999999999999999999999999985 57888753
No 158
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.41 E-value=8.2e-07 Score=52.82 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=30.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+|+|||||+.|+.+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 689999999999999999999999999999754
No 159
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.41 E-value=4.6e-07 Score=70.64 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=36.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
.+|+|||||++|+++|..|++.|.+|+|+|+. .+||+|...
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~ 45 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV 45 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence 48999999999999999999999999999984 678887643
No 160
>PLN03000 amine oxidase
Probab=98.41 E-value=4.1e-07 Score=75.04 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=37.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
++|+|||||++|+.+|..|++.|++|+|||+++.+||.+.
T Consensus 185 ~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 6899999999999999999999999999999999887754
No 161
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.40 E-value=4.3e-07 Score=70.16 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=33.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCCCcee
Q 038409 4 HAALIGAGTAGLGATRELSREG-YLLVVFERAKGLTQT 40 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~~Gg~ 40 (143)
+|+|||+|++|+++|+.++++| .+|+|+||.+..||.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~ 38 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGN 38 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCc
Confidence 5899999999999999999999 999999998876544
No 162
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.40 E-value=5.4e-07 Score=67.85 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||+.|+++|+.|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3799999999999999999999999999998754
No 163
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.39 E-value=5.6e-07 Score=70.21 Aligned_cols=42 Identities=26% Similarity=0.361 Sum_probs=37.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
|++|+|||+|++|+.+|..+++.|.+|+++|+. .+||.|.+.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~ 42 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLT 42 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccccc
Confidence 479999999999999999999999999999986 478887643
No 164
>PRK13984 putative oxidoreductase; Provisional
Probab=98.39 E-value=7.3e-07 Score=71.59 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=39.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
+++|+|||+|++|+++|..|++.|++|+|||+.+..||.+.+.
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~ 325 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG 325 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec
Confidence 4689999999999999999999999999999999888877653
No 165
>PRK07121 hypothetical protein; Validated
Probab=98.38 E-value=6.4e-07 Score=70.28 Aligned_cols=38 Identities=32% Similarity=0.459 Sum_probs=34.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT 40 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~ 40 (143)
.+|+|||+|.+|+++|+.+++.|.+|+|+||.+..||.
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~ 58 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence 57999999999999999999999999999998776643
No 166
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.38 E-value=5.9e-07 Score=70.78 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=34.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT 40 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~ 40 (143)
.+|+|||+|.+|+++|+.+++.|.+|+|+||.+..||.
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~ 99 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN 99 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence 47999999999999999999999999999998877653
No 167
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.38 E-value=6.5e-07 Score=69.71 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=32.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||+|++|+++|+.+++.|.+|+|+||.+.
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999874
No 168
>PLN02976 amine oxidase
Probab=98.37 E-value=6.1e-07 Score=77.02 Aligned_cols=42 Identities=31% Similarity=0.513 Sum_probs=38.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.++|+|||||++|+++|..|++.|++|+|||+++.+||.+..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 468999999999999999999999999999999999987653
No 169
>PRK09897 hypothetical protein; Provisional
Probab=98.37 E-value=7.7e-07 Score=70.41 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=37.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCceeeeecC
Q 038409 2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLTQTHLAMP 45 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~Gg~~~~~~ 45 (143)
+++|+|||||++|+++|..|.+.+ .+|+|||++..+|..+.|++
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~ 46 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSD 46 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecC
Confidence 479999999999999999998764 58999999988886666554
No 170
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.37 E-value=1.3e-06 Score=69.27 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+|+|+|||+|.+|..+|..|++...+|.+.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 6899999999999999999999888999988863
No 171
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.36 E-value=1.4e-06 Score=66.56 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=30.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~ 35 (143)
.++|+|||||++|+.+|..|++.|+ +|+++++.+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 3589999999999999999999877 799998764
No 172
>PTZ00058 glutathione reductase; Provisional
Probab=98.35 E-value=7.5e-07 Score=70.94 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=36.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.+|+|||||++|+.+|..+++.|.+|.|+|+. .+||+|.+
T Consensus 49 yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 49 YDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 47999999999999999999999999999985 68998764
No 173
>PLN02661 Putative thiazole synthesis
Probab=98.34 E-value=7.5e-07 Score=66.84 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=35.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeCCCCce-eee
Q 038409 3 CHAALIGAGTAGLGATRELSRE-GYLLVVFERAKGLTQ-THL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~~~~Gg-~~~ 42 (143)
.+|+|||||++|+++|+.|++. |.+|+++||...+|| .|.
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~ 134 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWL 134 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceee
Confidence 5899999999999999999976 899999999888764 553
No 174
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.34 E-value=8.3e-07 Score=61.18 Aligned_cols=33 Identities=39% Similarity=0.724 Sum_probs=30.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+|+|||||++|+++|..|++.+++++++|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 689999999999999999999999999987653
No 175
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.34 E-value=8.8e-07 Score=69.85 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=32.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.+|+|||||+.|+++|+.|++.|.+|+|+||.+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~ 41 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLA 41 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 58999999999999999999999999999997553
No 176
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.34 E-value=7.9e-07 Score=68.47 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=32.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G 38 (143)
.+|+|||||.+|+.+|..|++.|++|+|||+++.++
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999877644
No 177
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.33 E-value=2e-06 Score=65.68 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=31.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREG--YLLVVFERAK 35 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~ 35 (143)
|+++|+|||||.+|+.+|..|.+.- .++++++|++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~ 38 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRD 38 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCC
Confidence 4689999999999999999999974 8899999974
No 178
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.32 E-value=1.2e-06 Score=69.72 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=35.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC--CCceee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK--GLTQTH 41 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~--~~Gg~~ 41 (143)
..+|+|||+|.+||++|+.+++.|.+|+|+|+.+ ..||..
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 3589999999999999999999999999999988 556543
No 179
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.31 E-value=9.3e-07 Score=68.98 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=32.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|++|+++|+.+++.|.+|+|+|+.+.
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 47999999999999999999999999999999754
No 180
>PLN02507 glutathione reductase
Probab=98.31 E-value=1.2e-06 Score=68.97 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=36.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee---------CCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFER---------AKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er---------~~~~Gg~~~~ 43 (143)
.+|+|||||++|+.+|..+.+.|.+|.|+|+ ...+||+|.+
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 4699999999999999999999999999996 2458999875
No 181
>PLN02463 lycopene beta cyclase
Probab=98.30 E-value=9.3e-07 Score=68.65 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||++|+++|..|++.|++|+|+|+++.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 4899999999999999999999999999998754
No 182
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.30 E-value=1.2e-06 Score=69.96 Aligned_cols=39 Identities=31% Similarity=0.511 Sum_probs=35.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
.+|+|||+|++|+++|+.++++|.+|+|+||.+..||..
T Consensus 10 ~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 10 CDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcc
Confidence 579999999999999999999999999999998876543
No 183
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.30 E-value=1.1e-06 Score=68.64 Aligned_cols=41 Identities=27% Similarity=0.338 Sum_probs=36.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee------CCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFER------AKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er------~~~~Gg~~~~ 43 (143)
.+++|||+|++|+++|+.+++.|.+|+|+|+ ...+||.|..
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence 4799999999999999999999999999998 3557888764
No 184
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.30 E-value=1.3e-06 Score=69.04 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=34.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
.+|+|||||++|+++|..|++.|++++|+++. +||.|.
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~ 249 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL 249 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence 58999999999999999999999999999863 788774
No 185
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.29 E-value=9.1e-07 Score=67.58 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=32.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 46899999999999999999999999999998654
No 186
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.28 E-value=1.4e-06 Score=68.56 Aligned_cols=41 Identities=29% Similarity=0.551 Sum_probs=35.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC--------CCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK--------GLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~--------~~Gg~~~~ 43 (143)
.+|+|||||++|+.+|..|++.|.+|+|+|+.. .+||+|..
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n 54 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVN 54 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceecc
Confidence 589999999999999999999999999999631 38998743
No 187
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.28 E-value=1.2e-06 Score=68.71 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCC
Q 038409 4 HAALIGAGTAGLGATRELSRE--GYLLVVFERAKGL 37 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~ 37 (143)
+|+|||||+.|+++|..|++. |.+|+|+||.+.+
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~ 37 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAV 37 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcc
Confidence 799999999999999999997 9999999996643
No 188
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.27 E-value=1.7e-06 Score=68.95 Aligned_cols=39 Identities=15% Similarity=0.340 Sum_probs=35.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
.+|+|||+|.+|+++|+.+++.|.+|+|+|+.+..||..
T Consensus 7 ~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 579999999999999999999999999999987776553
No 189
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.27 E-value=1.6e-06 Score=68.49 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=34.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
.+|+|||+| +|+++|+.+++.|.+|+|+|+.+..||..
T Consensus 8 ~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 8 VDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred cCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 589999999 99999999999999999999988766443
No 190
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.27 E-value=1.5e-06 Score=69.13 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=31.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||+.|+++|+.|+++|.+|+|+||.+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 5799999999999999999999999999999654
No 191
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.26 E-value=1.5e-06 Score=68.36 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=32.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||+.|+++|+.|+++|.+|+|+||.+.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~ 40 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL 40 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4899999999999999999999999999999854
No 192
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.25 E-value=1.5e-06 Score=67.72 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=30.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~ 36 (143)
.+|+|||||+.|+++|+.|+++ |.+|+|+|+...
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 4799999999999999999998 899999998643
No 193
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.25 E-value=1.6e-06 Score=68.53 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=33.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
++|+|||||++|+++|..|++.|++|+|++. .+||.+.
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 6899999999999999999999999999975 4777664
No 194
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.24 E-value=1.3e-06 Score=67.75 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=37.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
.+|+|||+|++|+.+|..|++.|.+|.++||++..||.+.
T Consensus 5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred ceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 4799999999999999999999999999999999998765
No 195
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.24 E-value=2.5e-06 Score=66.23 Aligned_cols=43 Identities=28% Similarity=0.395 Sum_probs=39.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
..+++|||+|++|..+|..+++.|.++.++|+...+||+|...
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 3689999999999999999999999999999988899998753
No 196
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.21 E-value=1.9e-06 Score=65.38 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=31.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.++|+|||+|..|+.+|..|.+.|.+|+++++.+.
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~ 175 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS 175 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 36899999999999999999999999999998653
No 197
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.21 E-value=2e-06 Score=69.43 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=32.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.+|+|||+|++|++||+.+++.|.+|+|+|+.+..
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 47999999999999999999999999999997654
No 198
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.20 E-value=2.6e-06 Score=67.90 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=34.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT 40 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~ 40 (143)
.+|+|||+|.+|+++|+.+++.|.+|+|+|+.+..||.
T Consensus 8 ~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~ 45 (557)
T PRK07843 8 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS 45 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence 48999999999999999999999999999998876653
No 199
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.19 E-value=2.4e-06 Score=68.52 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=32.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.+|+|||+|++|++||+.+++.|.+|+|+|+.+..
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 48999999999999999999999999999987654
No 200
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.19 E-value=2.7e-06 Score=68.17 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=34.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT 40 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~ 40 (143)
.+|+|||+|.+|+++|+.+++.|.+|.|+|+.+..||.
T Consensus 12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 47999999999999999999999999999998876653
No 201
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.19 E-value=2.6e-06 Score=68.06 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=32.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G 38 (143)
.+|+|||+|.+|++||+.+++.|.+|+|+|+.+..+
T Consensus 6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~ 41 (566)
T PRK06452 6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTR 41 (566)
T ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 589999999999999999999999999999986543
No 202
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.19 E-value=2.4e-06 Score=68.22 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=31.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+|+|||+|++|++||+.+++.|.+|+|+|+.+..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 5899999999999999999999999999997653
No 203
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.19 E-value=3.4e-06 Score=63.45 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=38.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~Gg~~~~~ 44 (143)
++|+|||+|++|+-+|..|.++ +.+|+|||+.+.++|...|+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence 5899999999999999998874 78999999999999998876
No 204
>PLN02546 glutathione reductase
Probab=98.18 E-value=2.9e-06 Score=67.65 Aligned_cols=42 Identities=31% Similarity=0.293 Sum_probs=36.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC---------CCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERA---------KGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~---------~~~Gg~~~~~ 44 (143)
.+|+|||+|++|+.+|..+++.|.+|.|+|+. ..+||+|.+.
T Consensus 80 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~ 130 (558)
T PLN02546 80 FDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR 130 (558)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence 47999999999999999999999999999962 3478887653
No 205
>PLN02697 lycopene epsilon cyclase
Probab=98.18 E-value=2.5e-06 Score=67.52 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||++|+++|..|++.|++|+++|+...
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p 142 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 142 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc
Confidence 5899999999999999999999999999998644
No 206
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.18 E-value=3e-06 Score=67.34 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=33.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G 38 (143)
.+|+|||+|++|++||+.+++.|.+|+|+|+.+..+
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~ 52 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD 52 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence 579999999999999999999999999999987643
No 207
>PRK12839 hypothetical protein; Provisional
Probab=98.17 E-value=3.4e-06 Score=67.42 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=36.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.+|+|||+|.+|+++|+.+++.|.+|+|+|+.+.+||...+
T Consensus 9 ~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 9 YDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 47999999999999999999999999999998887765443
No 208
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.15 E-value=3.8e-06 Score=64.27 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=30.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC-CC-eEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSRE-GY-LLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~-g~-~v~v~Er~~~ 36 (143)
.+|+|||||+.|+++|+.|++. |. +|+|+||...
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 3799999999999999999985 85 9999999753
No 209
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.15 E-value=3.4e-06 Score=65.32 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=31.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~ 36 (143)
|++|+|||||++|+.+|..|++. +++|+|+|+.+.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 46899999999999999999876 679999999865
No 210
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.14 E-value=2.9e-06 Score=70.14 Aligned_cols=34 Identities=35% Similarity=0.383 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|+|||+|..|+-+|..|++.|.+|+++|+.+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 4689999999999999999999999999999864
No 211
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.14 E-value=3.6e-06 Score=67.23 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=36.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
.+|+|||+| +|+++|+.+++.|.+|.|+|+.+.+||...++
T Consensus 17 ~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~ 57 (564)
T PRK12845 17 VDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARS 57 (564)
T ss_pred eCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCc
Confidence 579999999 89999999999999999999998888665443
No 212
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.13 E-value=4.1e-06 Score=67.64 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=31.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||+.|.++|+.|+++|.+|+|+||.+.
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~ 105 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLRVGLVEREDF 105 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 5799999999999999999999999999999754
No 213
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.13 E-value=4e-06 Score=67.84 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=31.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.+|+|||+|.+||+||+.+++.|.+|+|+|+...+
T Consensus 36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 36 FDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 47999999999999999999999999999986554
No 214
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.13 E-value=4.2e-06 Score=67.17 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=32.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.+|+|||+|.+||+||+.+++.|.+|+|+|+....
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~ 47 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPT 47 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 47999999999999999999999999999997543
No 215
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.13 E-value=5e-06 Score=66.64 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=36.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
..+|+|||+|.+|+++|..++++|.+|+|+|+.+..||...
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 35899999999999999999999999999999887765533
No 216
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.12 E-value=4.7e-06 Score=65.42 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=37.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeC--------CCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSRE-GYLLVVFERA--------KGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~--------~~~Gg~~~~~ 44 (143)
..+|+|||+|++|..+|..+++. |.+|.|+|+. ..+||+|.+.
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~ 54 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNV 54 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCc
Confidence 35899999999999999999997 8999999984 4689998653
No 217
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.12 E-value=4.4e-06 Score=65.64 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=32.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G 38 (143)
.+|+|||||++|+++|..|++. +.+|+|+||-+.+|
T Consensus 7 ~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 7 KDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 4799999999999999999998 89999999954544
No 218
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.12 E-value=4.6e-06 Score=64.35 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=32.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
|..+|+|||+|++|+++|+.|++.|.+|+++|+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 67899999999999999999999999999999864
No 219
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.11 E-value=5.1e-06 Score=67.34 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=37.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC-CCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERA-KGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~-~~~Gg~~~~~ 44 (143)
.+|+|||+|++|+.+|..+++.|.+|.|+|+. ..+||+|.+.
T Consensus 117 yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~ 159 (659)
T PTZ00153 117 YDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV 159 (659)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe
Confidence 47999999999999999999999999999974 3699998754
No 220
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.11 E-value=4.6e-06 Score=63.62 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=34.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC------CCeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSRE------GYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~------g~~v~v~Er~~~~Gg~~~ 42 (143)
.+|+|||||++||++|+.|.|. .++|.|+|+++.+||...
T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl 122 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL 122 (621)
T ss_pred ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee
Confidence 3699999999999999999863 468999999999997665
No 221
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.09 E-value=5.1e-06 Score=67.02 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=32.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G 38 (143)
.+|+|||+|.+|++||+.+++.|.+|+|+|+.+..+
T Consensus 30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~ 65 (617)
T PTZ00139 30 YDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTR 65 (617)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCC
Confidence 479999999999999999999999999999976643
No 222
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.09 E-value=5.3e-06 Score=66.43 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=32.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC---CeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREG---YLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g---~~v~v~Er~~~~G 38 (143)
.+|+|||+|++|++||+.+++.| .+|+|+||.+..+
T Consensus 6 ~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~ 44 (577)
T PRK06069 6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR 44 (577)
T ss_pred cCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence 47999999999999999999998 8999999987644
No 223
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.09 E-value=5e-06 Score=65.40 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~ 37 (143)
.+|+|||||+.|+++|..|++. |.+|+|+||.+.+
T Consensus 6 ~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 6 TDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred ceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 4799999999999999999984 7899999997654
No 224
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.09 E-value=5.9e-06 Score=63.60 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=34.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCc
Q 038409 2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLT 38 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~G 38 (143)
+.+|+|||||+.|+++|..|++.. ++|.|+||.+.+|
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 458999999999999999999997 9999999988866
No 225
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.08 E-value=5.8e-06 Score=65.58 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=35.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
.+|+|||+|++|+.+|..|.++|++|.++|+....|+.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 479999999999999999999999999999998877655
No 226
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.08 E-value=3.6e-06 Score=65.20 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=31.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 36899999999999999999999999999998653
No 227
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.07 E-value=5.8e-06 Score=66.85 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=32.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G 38 (143)
.+|+|||+|++|++||+.+++.|.+|+|+|+....+
T Consensus 51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~ 86 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTR 86 (635)
T ss_pred cCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCC
Confidence 479999999999999999999999999999976543
No 228
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.07 E-value=6e-06 Score=66.27 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G 38 (143)
.+|+|||+|.+||+||+.+++.|.+|+|+|+....+
T Consensus 8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~ 43 (588)
T PRK08958 8 FDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTR 43 (588)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 479999999999999999999999999999986543
No 229
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.06 E-value=6.3e-06 Score=65.97 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=32.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC-CCc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK-GLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~-~~G 38 (143)
.+|+|||||++|+.||.++++.|.+|.++|+.. .+|
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG 41 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG 41 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccc
Confidence 489999999999999999999999999999974 455
No 230
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.06 E-value=6.6e-06 Score=64.56 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=36.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC-----C---CCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERA-----K---GLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~-----~---~~Gg~~~~ 43 (143)
.+++|||+|++|+.+|..+++.|.+|.++|+. . .+||+|.+
T Consensus 3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence 58999999999999999999999999999973 1 48998765
No 231
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.05 E-value=6.7e-06 Score=64.69 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=30.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC-C-CeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSRE-G-YLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~-g-~~v~v~Er~~~ 36 (143)
.+|+|||||+.|+++|..|++. + .+|+|+||.+.
T Consensus 46 ~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred ccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 5899999999999999999986 3 69999999764
No 232
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.05 E-value=6.3e-06 Score=63.85 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=31.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ 39 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg 39 (143)
.+|+|||+|.+|++||+.+. .|.+|+|+|+.+..||
T Consensus 5 ~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 5 ADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred ccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 58999999999999999984 6999999999877543
No 233
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.05 E-value=6.3e-06 Score=66.91 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=32.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.+|+|||+|.+||+||+.+++.|.+|+|+|+.+..
T Consensus 6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred ccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 47999999999999999999999999999987653
No 234
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.05 E-value=6.5e-06 Score=63.68 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=31.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~ 37 (143)
|+|+|||||++|+++|..|++.+ .+|+|+|+.+..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 58999999999999999999875 589999998764
No 235
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.05 E-value=6.9e-06 Score=66.04 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=32.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.+|+|||+|.+|++||+.+++.|.+|+|+|+....
T Consensus 13 ~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~ 47 (598)
T PRK09078 13 YDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPT 47 (598)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 37999999999999999999999999999997653
No 236
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.05 E-value=5.7e-06 Score=66.56 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=30.2
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 5 AALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 5 v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|+|||+|++||+||+.+++.|.+|+|+||.+.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~ 32 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA 32 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 68999999999999999999999999999874
No 237
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.04 E-value=8.9e-06 Score=65.16 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=36.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA 43 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~ 43 (143)
.+|+|||+|.+|+++|..+++.|.+|+|+|+.+.+||...+
T Consensus 17 ~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 17 FDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 57999999999999999999999999999998877765543
No 238
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.04 E-value=7.5e-06 Score=61.79 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=39.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
.+|+|||+|++|..||+..+|.|.+..++|++..+||++...
T Consensus 40 ~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv 81 (506)
T KOG1335|consen 40 YDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV 81 (506)
T ss_pred CCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec
Confidence 579999999999999999999999999999999999998753
No 239
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.03 E-value=6.3e-06 Score=68.60 Aligned_cols=34 Identities=35% Similarity=0.378 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
.++++|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~ 178 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP 178 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 3689999999999999999999999999999864
No 240
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.03 E-value=8.1e-06 Score=70.09 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=35.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT 40 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~ 40 (143)
.+|+|||+|.+|++||+.+++.|.+|+|+|+.+..||.
T Consensus 410 ~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 410 ARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 57999999999999999999999999999998887754
No 241
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.03 E-value=8e-06 Score=65.81 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=32.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~ 37 (143)
.+|+|||+|.+|++||+.+++. |.+|+|+||.+..
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 4799999999999999999998 9999999998753
No 242
>PLN02815 L-aspartate oxidase
Probab=98.02 E-value=8.3e-06 Score=65.50 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=32.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ 39 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg 39 (143)
.+|+|||+|.+||++|+.+++.| +|+|+|+.+..||
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 47999999999999999999999 9999999876543
No 243
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.01 E-value=5.4e-06 Score=63.97 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=28.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHH--------------CCCeEEEEeeCC
Q 038409 3 CHAALIGAGTAGLGATRELSR--------------EGYLLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~--------------~g~~v~v~Er~~ 35 (143)
++|+|||||+.|+-.|..|.+ .+.+|+++++.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 220 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGS 220 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCC
Confidence 389999999999999998875 367899999764
No 244
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.00 E-value=9.6e-06 Score=63.69 Aligned_cols=35 Identities=34% Similarity=0.654 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G 38 (143)
.+|+|||+|++|++||+.+++.|. |+|+||.+..+
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~ 37 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTE 37 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCC
Confidence 579999999999999999999997 99999986644
No 245
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.99 E-value=1e-05 Score=64.79 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~G 38 (143)
.+|+|||+|++|++||+.+++.| .+|+|+||.+..|
T Consensus 4 ~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred ccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 47999999999999999999874 7999999976544
No 246
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=1e-05 Score=64.34 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=30.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||+|.+|++||+.+ +.|.+|+|+|+.+.
T Consensus 8 ~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 8 TDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred cCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 4799999999999999999 89999999999764
No 247
>PRK08275 putative oxidoreductase; Provisional
Probab=97.98 E-value=1e-05 Score=64.50 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=31.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~ 36 (143)
.+|+|||+|.+|++||+.+++. |.+|+|+||.+.
T Consensus 10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4799999999999999999986 689999999876
No 248
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.97 E-value=1.9e-05 Score=65.81 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=30.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSRE----GYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~----g~~v~v~Er~~~ 36 (143)
.++|+|||+|++|+.+|..|++. +++|+|+++.+.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~ 41 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPR 41 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCC
Confidence 45999999999999999999764 579999998765
No 249
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.96 E-value=1e-05 Score=62.31 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 36899999999999999999999999999998643
No 250
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.96 E-value=1e-05 Score=64.53 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ 39 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg 39 (143)
.+|+|||+|.+|++||+.+. .|.+|+|+|+.+..||
T Consensus 10 ~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 10 FDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred CCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 47999999999999999996 5999999999876543
No 251
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.96 E-value=1.4e-05 Score=59.35 Aligned_cols=36 Identities=31% Similarity=0.495 Sum_probs=32.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|..+|+|||||++|++++++|+++|.++.|+-+...
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 677999999999999999999999999999987543
No 252
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.95 E-value=1.1e-05 Score=64.74 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=32.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCce
Q 038409 3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLTQ 39 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~Gg 39 (143)
.+|+|||+|++||+||+.+++. |.+|+|+||.+..+|
T Consensus 5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 5 ADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 5799999999999999999987 479999999866543
No 253
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.93 E-value=1.2e-05 Score=61.35 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=27.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEE-eeCCCCc
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVF-ERAKGLT 38 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~-Er~~~~G 38 (143)
+|+|||||.+|+.||+++++.|.+|.+| ++.+.+|
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~ 36 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIG 36 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccc
Confidence 5899999999999999999999999999 4443343
No 254
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.93 E-value=1.4e-05 Score=64.34 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=30.1
Q ss_pred cEEEEcCCHHHHHHHHHHH----HCCCeEEEEeeCCC
Q 038409 4 HAALIGAGTAGLGATRELS----REGYLLVVFERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~----~~g~~v~v~Er~~~ 36 (143)
+|+|||+|++||+||+.++ +.|.+|+|+|+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 5899999999999999998 67999999999765
No 255
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.92 E-value=1.4e-05 Score=63.99 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=32.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCce
Q 038409 3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLTQ 39 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~Gg 39 (143)
.+|+|||+|++|++||+.+++. |.+|+|+||.+..++
T Consensus 4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 4799999999999999999987 579999999876554
No 256
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.91 E-value=1.4e-05 Score=58.57 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=28.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409 4 HAALIGAGTAGLGATRELSREG-YLLVVFERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~ 36 (143)
+++|||+|.+|..+|..|++.+ .+|+|+|+.+.
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 6899999999999999999997 69999998765
No 257
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.91 E-value=1.8e-05 Score=60.04 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=31.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG 36 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~ 36 (143)
|+++|+|||||++|+.+|..|++. ..+++|+++.+.
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 778999999999999999999875 458999987654
No 258
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.91 E-value=1.6e-05 Score=62.88 Aligned_cols=35 Identities=23% Similarity=0.484 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G 38 (143)
.+|+|||+|.+|++||+.+++ |.+|+|+|+.+..+
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~ 38 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRN 38 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCC
Confidence 589999999999999999976 89999999987644
No 259
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.89 E-value=2.3e-05 Score=61.76 Aligned_cols=40 Identities=23% Similarity=0.417 Sum_probs=35.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
..+|+|||||+.|+.+|..++.+|++|.++|+.+-..|+-
T Consensus 12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred CCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence 3589999999999999999999999999999987755443
No 260
>PLN02507 glutathione reductase
Probab=97.86 E-value=2.6e-05 Score=61.53 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=31.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
.++|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 4689999999999999999999999999999864
No 261
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.86 E-value=3.1e-05 Score=60.53 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++++|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 211 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR 211 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 36899999999999999999999999999998643
No 262
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.85 E-value=2.5e-05 Score=62.05 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ 39 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg 39 (143)
.+|+|||+|.+|+++|+.+++. .+|+|+|+.+..||
T Consensus 9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred CCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 4799999999999999999886 89999999876443
No 263
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.84 E-value=2.2e-05 Score=59.43 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=31.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||||.+|.+.|.+|.+.|.+|.|+||.-+
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~ 79 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDLS 79 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCCcEEEEEecccc
Confidence 3699999999999999999999999999999643
No 264
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=2.6e-05 Score=62.61 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=30.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.+|+|||+|++|+++|+.+++. .+|+|+|+.+..
T Consensus 6 ~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~ 39 (583)
T PRK08205 6 YDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPT 39 (583)
T ss_pred ccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 3799999999999999999886 899999997653
No 265
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.83 E-value=4.9e-05 Score=63.00 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=28.3
Q ss_pred EEEEcCCHHHHHHHHHHHHC---CCeEEEEeeCCCC
Q 038409 5 AALIGAGTAGLGATRELSRE---GYLLVVFERAKGL 37 (143)
Q Consensus 5 v~IIGaG~~Gl~~A~~L~~~---g~~v~v~Er~~~~ 37 (143)
|+|||+|++|+.+|..|++. +++|+|+++.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 58999999999999998864 5799999987653
No 266
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.81 E-value=2.6e-05 Score=60.82 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=27.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC---CeEEEEeeCCC
Q 038409 4 HAALIGAGTAGLGATRELSREG---YLLVVFERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g---~~v~v~Er~~~ 36 (143)
+|+|||||++|..+|..|++.+ ++|+|+|+...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 6999999999999999999988 89999998754
No 267
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.80 E-value=1.3e-05 Score=61.32 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=28.7
Q ss_pred CCCeEEcCceEEEeecceEEEccCcE-EEeeeEeC
Q 038409 110 YNNMLLYSMIESIHENGSVVIRIQRV-IFTDIIQH 143 (143)
Q Consensus 110 ~~~v~~~~~v~~~~~~~~v~~~dG~~-~~aD~vI~ 143 (143)
..+|.++..|+++++++ |++.+|.+ +++|.||+
T Consensus 223 GV~v~l~~~Vt~v~~~~-v~~~~g~~~I~~~tvvW 256 (405)
T COG1252 223 GVEVLLGTPVTEVTPDG-VTLKDGEEEIPADTVVW 256 (405)
T ss_pred CCEEEcCCceEEECCCc-EEEccCCeeEecCEEEE
Confidence 45777888899999998 99999985 99999985
No 268
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.79 E-value=2.9e-05 Score=59.96 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||||.+|+.+|..|.+.+++|+|+++++.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 36899999999999999999877899999998765
No 269
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.76 E-value=4.8e-05 Score=60.75 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=32.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.+|+|||+|.+||.||+.+++.|.+|.|+|+....
T Consensus 7 ~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~ 41 (562)
T COG1053 7 FDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK 41 (562)
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence 48999999999999999999999999999987663
No 270
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.75 E-value=4e-05 Score=51.39 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
||+|+|||..|.++|..|+++|++|+++.|.+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~ 33 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEE 33 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 699999999999999999999999999998643
No 271
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.74 E-value=6.2e-05 Score=56.29 Aligned_cols=38 Identities=29% Similarity=0.484 Sum_probs=33.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC--Ccee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG--LTQT 40 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~--~Gg~ 40 (143)
.+|+|||||.+||.+|..|+.+|.+|.|+|+... +||.
T Consensus 6 ~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 6 ADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred ccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 4799999999999999999999999999998765 6644
No 272
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.74 E-value=4.3e-05 Score=64.20 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||+|.+|+++|+.+++.|.+|+|+|+.+.
T Consensus 14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 4799999999999999999999999999999764
No 273
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.69 E-value=1.8e-05 Score=57.73 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=32.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCC------CeEEEEeeCCCCc
Q 038409 2 SCHAALIGAGTAGLGATRELSREG------YLLVVFERAKGLT 38 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g------~~v~v~Er~~~~G 38 (143)
.++|.|||||+.|.++|..|.+++ +++++||.+...|
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 478999999999999999999987 7999999876644
No 274
>PRK02106 choline dehydrogenase; Validated
Probab=97.69 E-value=5.5e-05 Score=60.40 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=30.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHH-CCCeEEEEeeCC
Q 038409 3 CHAALIGAGTAGLGATRELSR-EGYLLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~Er~~ 35 (143)
.+++|||+|.+|+.+|..|++ .|++|+|+|+.+
T Consensus 6 ~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 6 YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 479999999999999999999 799999999974
No 275
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.69 E-value=8.5e-05 Score=57.87 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=33.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
..+++|||+|++|..+|. ++.|.+|.++|+ ..+||+|.+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~-~~~GGtC~n~ 41 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEK-GTFGGTCLNV 41 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeC-CCCCCeeecc
Confidence 358999999999998854 457999999997 5689998754
No 276
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.67 E-value=7.7e-05 Score=56.55 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=36.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
++++|||+|..|+.+|..|++.|++|+++|+.+.+++..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence 689999999999999999999999999999999877554
No 277
>PRK07846 mycothione reductase; Reviewed
Probab=97.66 E-value=6.8e-05 Score=58.42 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=32.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~ 44 (143)
.+++|||+|++|..+|.. +.|.+|.++|+ ..+||+|.+.
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~ 40 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV 40 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc
Confidence 579999999999988765 46999999997 4689988754
No 278
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.66 E-value=4.4e-05 Score=59.03 Aligned_cols=34 Identities=35% Similarity=0.456 Sum_probs=30.4
Q ss_pred EEcCCHHHHHHHHHHHHCCCeEEEEeeCCC--Ccee
Q 038409 7 LIGAGTAGLGATRELSREGYLLVVFERAKG--LTQT 40 (143)
Q Consensus 7 IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~--~Gg~ 40 (143)
|||+|++|+++|+.+++.|.+|+|+||.+. .||.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~ 36 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGN 36 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcC
Confidence 799999999999999999999999999875 4543
No 279
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.64 E-value=5.1e-05 Score=57.36 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 12 TAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 12 ~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
++||+||..|+++|++|+|||+++.+||.+.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~ 31 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIR 31 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceE
Confidence 6899999999999999999999999997754
No 280
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.63 E-value=7.2e-05 Score=55.69 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
..|+|||||+-|+++|..|+++|.++.++||.+-
T Consensus 8 ~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ 41 (399)
T KOG2820|consen 8 RDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL 41 (399)
T ss_pred eeEEEEcccccchHHHHHHHhcCCeEEEEeccCC
Confidence 4799999999999999999999999999999765
No 281
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.61 E-value=0.0001 Score=55.15 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
|+++|+|||+|..|...|..|++.|++|+++.|.+
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 77899999999999999999999999999999864
No 282
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.59 E-value=0.00012 Score=58.82 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=31.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+|+|||||++|+.+|.++++.|.+|+++|+....
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~ 35 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDT 35 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccccc
Confidence 6999999999999999999999999999997543
No 283
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.58 E-value=8.2e-05 Score=59.08 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=29.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCC
Q 038409 4 HAALIGAGTAGLGATRELSREG-YLLVVFERAK 35 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~ 35 (143)
+++|||+|.+|+.+|..|++.+ ++|.|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 5899999999999999999997 7999999975
No 284
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.56 E-value=0.00013 Score=56.29 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=31.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||+|++|+++|+.|.+.|.++.++|+...
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 3799999999999999999999999999998643
No 285
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.55 E-value=0.00012 Score=50.27 Aligned_cols=33 Identities=36% Similarity=0.696 Sum_probs=28.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+|+|||+|..|...|..++..|++|++|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 689999999999999999999999999998655
No 286
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.55 E-value=0.0001 Score=58.34 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=28.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|||+|++|++||+.++ +.+|+|+|+.+.
T Consensus 10 ~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 10 GRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 57999999999999999986 569999999875
No 287
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.54 E-value=0.00016 Score=56.74 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|+|||+|.+|+.+|..|++.|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999764
No 288
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.50 E-value=0.00015 Score=50.07 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=27.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|+|+|||.|..|+.+|..|++.|++|+.||..+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 6899999999999999999999999999997655
No 289
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.46 E-value=0.00026 Score=54.87 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=33.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 478999999999999999999999999999997653
No 290
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.45 E-value=0.00016 Score=54.50 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=28.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHC---CCeEEEEeeCCC
Q 038409 4 HAALIGAGTAGLGATRELSRE---GYLLVVFERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~---g~~v~v~Er~~~ 36 (143)
+|+|||||++|+.+|..|+++ +++|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 589999999999999999643 689999998765
No 291
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.43 E-value=0.00021 Score=52.96 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=31.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|.|||+|..|...|..|+++|++|++|++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 5899999999999999999999999999998754
No 292
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.42 E-value=0.00019 Score=53.76 Aligned_cols=34 Identities=32% Similarity=0.548 Sum_probs=30.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSRE----GYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~----g~~v~v~Er~~~ 36 (143)
..|+|||+|-.|.+.|..|.++ |++|+|+||.+.
T Consensus 87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 5799999999999999999854 789999999765
No 293
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.42 E-value=0.00031 Score=54.77 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=33.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++++|||||..|+-.|..+++.|.+|||+|+.+.+
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 678999999999999999999999999999998773
No 294
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.41 E-value=0.00033 Score=54.85 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=32.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|.+|+.+|..|++.|.+|+++|+.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 47899999999999999999999999999999765
No 295
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.38 E-value=0.0003 Score=51.71 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||+|..|..+|..|+++|++|++|++++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 6899999999999999999999999999998654
No 296
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.00026 Score=55.12 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=33.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+|+|+|||+|.+|..+|..|.+.|-+|+++.|++.
T Consensus 175 GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 175 GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred CCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 68999999999999999999999999999999876
No 297
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.35 E-value=0.00033 Score=52.35 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||+|..|...|..++..|++|++|++.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6899999999999999999999999999998654
No 298
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.34 E-value=0.00031 Score=52.32 Aligned_cols=38 Identities=26% Similarity=0.555 Sum_probs=34.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH 41 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~ 41 (143)
.|+|||+|.+||+++..+...|-.|+++|++..+||.-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 48999999999999999999988899999999988654
No 299
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.34 E-value=0.00034 Score=51.41 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||+|..|...|..|++.|++|++|++.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4899999999999999999999999999998765
No 300
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.34 E-value=0.00042 Score=53.95 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=33.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|.+|+.+|..|++.|.+|+++|+.+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 478999999999999999999999999999997753
No 301
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.33 E-value=0.00029 Score=52.92 Aligned_cols=68 Identities=24% Similarity=0.378 Sum_probs=47.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCCccCccCCccccccccccceeeeeeccccC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFL 76 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (143)
+-+|||||.+|+++|+..+..|.++.+.|..-.+||+|... ++-|..+. |..+.|..++.+-.+|.|+
T Consensus 22 DylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~---GCVPKKvm--~~~a~~~~~~~da~~yG~~ 89 (478)
T KOG0405|consen 22 DYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV---GCVPKKVM--WYAADYSEEMEDAKDYGFP 89 (478)
T ss_pred ceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee---ccccceeE--EehhhhhHHhhhhhhcCCc
Confidence 57899999999999999999999999999866799998843 23333333 4444443444333344333
No 302
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00029 Score=56.20 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=30.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
.+++|||+|.+|..+|..|++.|.+|+|+|+..
T Consensus 8 ~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 8 YDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 489999999999999999998899999999974
No 303
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.31 E-value=0.00051 Score=53.55 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=32.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 478999999999999999999999999999997663
No 304
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.31 E-value=0.0004 Score=50.97 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||+|..|...|..|++.|++|+++++++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 6899999999999999999999999999998653
No 305
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.28 E-value=0.00051 Score=53.82 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 468999999999999999999999999999998753
No 306
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.27 E-value=0.00055 Score=53.36 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=33.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 478999999999999999999999999999998753
No 307
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.27 E-value=0.0004 Score=50.97 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||+|..|..+|..|+++|++|+++++++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 6899999999999999999999999999998654
No 308
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.27 E-value=0.00058 Score=53.21 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=33.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 478999999999999999999999999999998753
No 309
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.26 E-value=0.00058 Score=50.64 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
|.|+|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 46899999999999999999999999999999964
No 310
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.26 E-value=0.00045 Score=53.84 Aligned_cols=33 Identities=36% Similarity=0.605 Sum_probs=30.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+|+|||.|.+|+++|..|.+.|++|+++|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998654
No 311
>PRK07846 mycothione reductase; Reviewed
Probab=97.26 E-value=0.00061 Score=53.15 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=32.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 47899999999999999999999999999999765
No 312
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.26 E-value=0.00061 Score=53.34 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=33.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 478999999999999999999999999999987653
No 313
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.26 E-value=0.00058 Score=53.31 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=32.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 368999999999999999999999999999998653
No 314
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.26 E-value=0.00067 Score=50.42 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
.++|+|||+|..|...|..|++.|++|+++-|.+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4689999999999999999999999999999865
No 315
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.23 E-value=0.00066 Score=52.98 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=32.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 368999999999999999999999999999997663
No 316
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.23 E-value=0.00072 Score=45.53 Aligned_cols=35 Identities=29% Similarity=0.601 Sum_probs=30.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|++|.+||-|..|..+|..|.++|++|.+|+|.+.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 47999999999999999999999999999998744
No 317
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.23 E-value=0.00052 Score=53.05 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=32.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||.|..|+.+|..|+++|++|+.|++.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 7899999999999999999999999999998665
No 318
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.23 E-value=0.00067 Score=52.85 Aligned_cols=36 Identities=39% Similarity=0.566 Sum_probs=33.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 478999999999999999999999999999998764
No 319
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.22 E-value=0.00052 Score=50.47 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||+|..|...|..|++.|++|+++++++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5899999999999999999999999999998654
No 320
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.22 E-value=0.00067 Score=52.71 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=31.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+|+|+|+|+|.+|+.+|..|++.|++|+++++..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5799999999999999999999999999999864
No 321
>PRK06370 mercuric reductase; Validated
Probab=97.21 E-value=0.00072 Score=52.78 Aligned_cols=36 Identities=33% Similarity=0.460 Sum_probs=33.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 478999999999999999999999999999998764
No 322
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.21 E-value=0.00058 Score=50.17 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=30.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
|+|+|||+|..|...|..|.+.|++|+++.|.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 479999999999999999999999999999843
No 323
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.00046 Score=51.51 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=31.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+.|.|||||.+|--+|+.++++|+.|.+||=++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 35799999999999999999999999999996654
No 324
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.18 E-value=0.00079 Score=52.81 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=32.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 478999999999999999999999999999997653
No 325
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.17 E-value=0.00011 Score=51.70 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=33.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc-eeee
Q 038409 4 HAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT-QTHL 42 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G-g~~~ 42 (143)
+|+|||||.+||++|+....+ ..+|.|+|++-..| |.|.
T Consensus 78 DvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 78 DVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred ceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 699999999999999999855 56899999987765 6675
No 326
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.16 E-value=0.00084 Score=52.49 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=32.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 46899999999999999999999999999998765
No 327
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.16 E-value=0.00071 Score=49.82 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=29.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFER 33 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er 33 (143)
|+|+|||+|..|...|..|++.|++|+++.|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 4799999999999999999999999999998
No 328
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.16 E-value=0.00069 Score=49.56 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||+|..|...|..|++.|++|+++++++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 5899999999999999999999999999996544
No 329
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.16 E-value=0.00072 Score=50.20 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|.|||+|.-|...|..|++.|++|+++.|.+.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~ 35 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPE 35 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 6899999999999999999999999999998643
No 330
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.00075 Score=47.97 Aligned_cols=34 Identities=38% Similarity=0.601 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|+++|||+|.-|...|..|.+.|++|+++|+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 6899999999999999999999999999997654
No 331
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.13 E-value=0.00045 Score=53.86 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=29.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+|+|||+|++||++|+.|.+. ++|+|+-|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 799999999999999999998 99999988655
No 332
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.12 E-value=0.0005 Score=53.16 Aligned_cols=40 Identities=33% Similarity=0.459 Sum_probs=35.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
.+++|||+|..||++|..|++-|-+|.++||+...||.-.
T Consensus 15 ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaav 54 (561)
T KOG4254|consen 15 YDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAV 54 (561)
T ss_pred cceEEecCCccchhHHHHHHhcCcceEEEEEeeecCccee
Confidence 4789999999999999999999999999999977776543
No 333
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.12 E-value=0.00099 Score=51.94 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|+|||+|..|+.+|..|.+.|.+|+++++++
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3789999999999999999999999999999874
No 334
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.00054 Score=50.29 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=29.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCC-------CeEEEEeeCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREG-------YLLVVFERAKG 36 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g-------~~v~v~Er~~~ 36 (143)
++++|+|||+|..|++.|.++.+.. .+|++++-+..
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 3579999999999999999998843 57899876544
No 335
>PLN02785 Protein HOTHEAD
Probab=97.10 E-value=0.00077 Score=54.30 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=29.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
.+++|||+|.+|+.+|..|.+ +.+|.|+|+.+
T Consensus 56 yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 56 YDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred CCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 579999999999999999999 68999999975
No 336
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.10 E-value=0.001 Score=51.93 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=33.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++++|||+|..|+..|..|++.|.+|+++|+.+.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l 204 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 478999999999999999999999999999987653
No 337
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.10 E-value=0.00079 Score=52.65 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=34.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeeCCCCceeee
Q 038409 2 SCHAALIGAGTAGLGATRELSRE----GYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~----g~~v~v~Er~~~~Gg~~~ 42 (143)
.+++=|||+|+++|++|..|-+. |-+++|||+.+..||.+-
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 46788999999999999999987 448999999888776543
No 338
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.09 E-value=0.00086 Score=52.97 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=32.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
-++|+|||+|..|...|..|.++|++|++|++.+.
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998654
No 339
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.09 E-value=0.0012 Score=48.99 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=32.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.|+|.|||+|..|.+.|..|.+.|++|+++.|...
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 57899999999999999999999999999998653
No 340
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.09 E-value=0.00088 Score=50.05 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=31.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|.-|...|..|.+.|++|+++.|.+.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 36899999999999999999999999999998643
No 341
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.08 E-value=0.0018 Score=50.31 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=30.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
.+|+++|+|..|+-+|.+|...+.+|+++++.+
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~ 246 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP 246 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCc
Confidence 579999999999999999999999999999754
No 342
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.07 E-value=0.001 Score=49.24 Aligned_cols=34 Identities=35% Similarity=0.603 Sum_probs=31.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||+|..|...|..|++.|++|+++++++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 6899999999999999999999999999997543
No 343
>PRK10262 thioredoxin reductase; Provisional
Probab=97.05 E-value=0.0013 Score=48.83 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=32.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|..|+.+|..|++.+.+|+++++.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 47899999999999999999999999999999764
No 344
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.05 E-value=0.0012 Score=52.29 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=32.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|..|+.+|..|++.+.+|+++|+.+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l 387 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL 387 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence 479999999999999999999999999999987654
No 345
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0011 Score=47.12 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=34.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC----Cceeeeec
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG----LTQTHLAM 44 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~----~Gg~~~~~ 44 (143)
.+|+|||+|+++..+|+.++++..++++||---. .||.+..+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT 54 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT 54 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence 3899999999999999999999999999996433 46666544
No 346
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.03 E-value=0.0011 Score=48.79 Aligned_cols=36 Identities=33% Similarity=0.636 Sum_probs=33.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|.++|.|||.|..|...|..|.+.|++|.+|++++.
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~ 36 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE 36 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 678999999999999999999999999999998654
No 347
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.03 E-value=0.001 Score=50.20 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=24.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHH----CC--CeEEEE
Q 038409 3 CHAALIGAGTAGLGATRELSR----EG--YLLVVF 31 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~----~g--~~v~v~ 31 (143)
++|+|||+|.+|+.+|..|.+ .| .+|+++
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li 180 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI 180 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 589999999999999999975 34 478888
No 348
>PRK12831 putative oxidoreductase; Provisional
Probab=97.02 E-value=0.0013 Score=51.62 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|+|||+|..|+.+|..|.+.|.+|+++.+++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4799999999999999999999999999999864
No 349
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.01 E-value=0.0016 Score=42.98 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=29.3
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 5 AALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 5 v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
|+|+|+|..|...|..|++.|++|+++-|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999876
No 350
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.99 E-value=0.0015 Score=48.79 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=30.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
|+|+|||+|.-|.+.|..|++.|++|+++.|.+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 479999999999999999999999999999854
No 351
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.98 E-value=0.0012 Score=50.20 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|||.|||.|.-||+.|.+|++.||+|++++..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 6899999999999999999999999999997544
No 352
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.98 E-value=0.0012 Score=48.59 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||+|..|...|..|.+.|++|++|++++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 6899999999999999999999999999997653
No 353
>PTZ00058 glutathione reductase; Provisional
Probab=96.98 E-value=0.0015 Score=52.41 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=32.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 47899999999999999999999999999999765
No 354
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.97 E-value=0.0016 Score=51.62 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|.+|+.+|..|+..+.+|+++++.+.+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 478999999999999999999999999999987654
No 355
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.94 E-value=0.0021 Score=45.03 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=30.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+++|+|||||..|...+..|.+.|.+|+|+...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 579999999999999999999999999999764
No 356
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.93 E-value=0.002 Score=50.10 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=32.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++++|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 46899999999999999999999999999998765
No 357
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.92 E-value=0.0021 Score=49.92 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=32.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|..|+..|..|++.|.+|+++|+.+.+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 468999999999999999999999999999987653
No 358
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.91 E-value=0.0018 Score=50.13 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=32.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 36899999999999999999999999999998764
No 359
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.90 E-value=0.0019 Score=51.76 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=32.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 47899999999999999999999999999999764
No 360
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.90 E-value=0.0014 Score=51.88 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=31.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|.|||+|.-|..+|..|++.|++|++|++++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6899999999999999999999999999998755
No 361
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.90 E-value=0.0016 Score=47.23 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCC---CeEEEEeeCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREG---YLLVVFERAKG 36 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g---~~v~v~Er~~~ 36 (143)
|+++|.|||+|..|...|..|.+.| .++.+++|++.
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~ 39 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPE 39 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHH
Confidence 7889999999999999999999998 78999998643
No 362
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.90 E-value=0.0013 Score=50.64 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|+|.|||.|..|+.+|..|++.|++|+++++.+.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 4799999999999999999999999999998755
No 363
>PRK06116 glutathione reductase; Validated
Probab=96.89 E-value=0.0021 Score=50.04 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=32.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 47899999999999999999999999999998765
No 364
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.89 E-value=0.0024 Score=43.21 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=30.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+.+|+|+|+|..|..|+..|...|++++++|..+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~ 54 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE 54 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence 46899999999999999999999999999997643
No 365
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.87 E-value=0.0024 Score=46.47 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=31.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||+|.+|+.+|..|++.+.+|+++++.+.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~ 175 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK 175 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence 46899999999999999999999999999998764
No 366
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.87 E-value=0.0016 Score=40.57 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+++|+|||+|..|..-+..|.+.|.+|+|+-..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 579999999999999999999999999999765
No 367
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.86 E-value=0.0026 Score=43.20 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=30.0
Q ss_pred CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+++|+|||+|- +|..+|..|.+.|.++++..|.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 58999999995 7999999999999999999986
No 368
>PRK13748 putative mercuric reductase; Provisional
Probab=96.85 E-value=0.0022 Score=51.27 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=31.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 4789999999999999999999999999999853
No 369
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.84 E-value=0.0031 Score=41.17 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~ 36 (143)
+++|+|||+|-+|-+++.+|.+.|.+ ++|+-|...
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 57999999999999999999999986 999988643
No 370
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.84 E-value=0.0017 Score=47.44 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=30.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|.|||.|..|.+.|..|++.|++|+++++++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~ 34 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES 34 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 4799999999999999999999999999998643
No 371
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.83 E-value=0.00028 Score=57.31 Aligned_cols=32 Identities=38% Similarity=0.462 Sum_probs=28.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
++.+|||+|.-|+-+|.+|.+.|.++++++=.
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~ 177 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIA 177 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeec
Confidence 46789999999999999999999999998743
No 372
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.83 E-value=0.0024 Score=52.19 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=32.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
+++|+|||+|..|+-.|..|.+.|.+|+++|+.+.+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 468999999999999999999999999999998764
No 373
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.79 E-value=0.0019 Score=51.16 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|.|||+|.-|..+|..|++.|++|+++|+++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998765
No 374
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.79 E-value=0.0027 Score=47.90 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=30.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~ 35 (143)
+++|+|||+|..|+.+|..|.+.|.+ |+|+++++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 36899999999999999999988986 99999864
No 375
>PRK04148 hypothetical protein; Provisional
Probab=96.78 E-value=0.0019 Score=42.21 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=30.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++++++||.| .|...|..|++.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3679999999 888889999999999999997655
No 376
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.78 E-value=0.003 Score=44.16 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=30.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+++|+|||||-.|...+..|.+.|.+|+|+.+.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 589999999999999999999999999999764
No 377
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.77 E-value=0.0034 Score=42.12 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=29.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFE 32 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~E 32 (143)
+++|+|||||-.|..-+..|.+.|++|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 5799999999999999999999999999994
No 378
>PRK14727 putative mercuric reductase; Provisional
Probab=96.75 E-value=0.0029 Score=49.76 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=30.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+++|+|||+|..|+.+|..|++.|.+|+++++.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 478999999999999999999999999999975
No 379
>PLN02546 glutathione reductase
Probab=96.74 E-value=0.0033 Score=50.48 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=32.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~ 37 (143)
.++|+|||+|..|+-.|..|.+.|.+|+++|+.+.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 478999999999999999999999999999987653
No 380
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.73 E-value=0.0051 Score=41.40 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=29.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+|+|+|||-|.-|.+-|..|+..|.+|.+-.|..+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTC
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCC
Confidence 68999999999999999999999999999988754
No 381
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0015 Score=49.30 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=30.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+|+|+|||+|.+|+-+|+.|+-.--.|+++|=.+.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 68999999999999999999876558999996544
No 382
>PRK14694 putative mercuric reductase; Provisional
Probab=96.71 E-value=0.003 Score=49.45 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+++++|||+|..|+.+|..|++.|.+|+++++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 468999999999999999999999999999974
No 383
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.71 E-value=0.0034 Score=46.45 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||.|..|..++..|++.|.+|++++|++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 57999999999999999999999999999998753
No 384
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.70 E-value=0.003 Score=52.33 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~ 36 (143)
+++|+|||+|..|+.+|..+.+.|.+ |+++++++.
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 47999999999999999999999987 999998653
No 385
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.70 E-value=0.0035 Score=46.63 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=30.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~ 36 (143)
|+|.|||+|..|.++|..|.+.| ..+.++++...
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 47999999999999999999998 48999998654
No 386
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.69 E-value=0.0035 Score=48.44 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=31.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|+|+|..|+.+|..++..|.+|+++|+.+.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 57899999999999999999999999999998654
No 387
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.68 E-value=0.0032 Score=49.20 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|+|+|.|.+|+++|..|++.|++|+++|+++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4789999999999999999999999999999754
No 388
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.68 E-value=0.0037 Score=44.10 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=30.1
Q ss_pred CcEEEEc-CCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 3 CHAALIG-AGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIG-aG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
|+|.||| +|.-|.+.|..|.+.|++|+++.|++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 4799997 79999999999999999999998865
No 389
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.67 E-value=0.0032 Score=49.64 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=30.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
.++++|||+|..|+-+|..|++.|.+|+++++.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 368999999999999999999999999999974
No 390
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.66 E-value=0.0031 Score=49.95 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=31.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+.+|+|+|+|..|+.++..++..|.+|.++|.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998754
No 391
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.66 E-value=0.0033 Score=49.36 Aligned_cols=33 Identities=24% Similarity=0.108 Sum_probs=30.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+++|+|+|.|-+|.++|..|.+.|.+|++.|.+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 579999999999999999999999999999954
No 392
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.64 E-value=0.0033 Score=49.57 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=30.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+++|+|+|.|.+|++++..|++.|.+|+++|+.
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 478999999999999999999999999999965
No 393
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.64 E-value=0.0041 Score=48.56 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=31.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~ 35 (143)
+++|+|||+|..|+.+|..|.+.|. +|+++++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4789999999999999999999998 899999864
No 394
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.62 E-value=0.0027 Score=52.42 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||||.-|...|..++..|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998754
No 395
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.62 E-value=0.0047 Score=45.72 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=30.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~ 36 (143)
++||+|||+|..|...|..+...|+ ++.+++..+.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 4799999999999999999998875 9999998554
No 396
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.62 E-value=0.0037 Score=49.47 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=30.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+++++|||+|..|+-+|..|++.|.+|+++++.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 368999999999999999999999999999974
No 397
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.62 E-value=0.0046 Score=48.10 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=31.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|+|.|-+|+++|..|++.|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 57899999999999999999999999999997543
No 398
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.61 E-value=0.0049 Score=45.81 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=30.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~ 36 (143)
+||+|||+|.-|..+|..|+..|+ +|+++|..+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 689999999999999999999876 8999997544
No 399
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.60 E-value=0.0039 Score=47.53 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=30.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
++|+|||+|..|+.+|..|.+.|.+|+++++++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 579999999999999999999999999999864
No 400
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.59 E-value=0.0046 Score=48.82 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=30.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHH---CCCeEEEEeeCCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSR---EGYLLVVFERAKGL 37 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~---~g~~v~v~Er~~~~ 37 (143)
+++++|||+|..|+-+|..+.. .|.+|+|+|+.+.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 4789999999999999976554 48999999988763
No 401
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.58 E-value=0.0033 Score=48.98 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=32.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+|+|+|+|-|.+|+++|..|.+.|++|++++.++.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCC
Confidence 58999999999999999999999999999996554
No 402
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.57 E-value=0.0031 Score=52.03 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||||..|...|..++..|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999997654
No 403
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.56 E-value=0.0045 Score=48.11 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=30.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|+|+|+|-+|+++|..|++.|.+|++.++..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4689999999999999999999999999998653
No 404
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.56 E-value=0.0044 Score=45.65 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=32.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|+|.|..|..+|..|+..|.+|++++|++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 57899999999999999999999999999998754
No 405
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.53 E-value=0.0043 Score=48.80 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=30.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~ 36 (143)
+|+|+|||+|..|+.+|..|++.| ++|+.+|..+.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 368999999999999999999884 78999997655
No 406
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.50 E-value=0.0047 Score=45.60 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|.|||.|.-|...|..|.+.|++|++|++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~ 35 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ 35 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 5899999999999999999999999999998754
No 407
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.50 E-value=0.0043 Score=48.66 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+|+|+|||+|.+|+.+|..|.+.+.+|+++.|+.
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 5899999999999999999999999999998853
No 408
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.49 E-value=0.0055 Score=47.77 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=32.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409 2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT 38 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G 38 (143)
..+|++||||+.|.+.+..|++- .+++.||||-+.++
T Consensus 3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 35899999999999999999976 67999999988754
No 409
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.48 E-value=0.0039 Score=47.85 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=29.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|+|+|||.|.-|+.+|..|+. |++|++|++.+.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 479999999999999987775 999999998655
No 410
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.47 E-value=0.0067 Score=42.32 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+|+|+|+|.|-.|..+|..|.+.|++|+++++++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 5789999999999999999999999999998754
No 411
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.46 E-value=0.0038 Score=50.58 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=31.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCC-Cceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYL-LVVFERAKG-LTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~-~Gg~~~ 42 (143)
-+|+|||+|.+|..+|.+|++.|.+ ..++|+... .|++|.
T Consensus 40 A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwh 81 (856)
T KOG2844|consen 40 ADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWH 81 (856)
T ss_pred ccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccc
Confidence 4799999999999999999999998 555566443 555554
No 412
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.45 E-value=0.0089 Score=35.81 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=29.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEee
Q 038409 2 SCHAALIGAGTAGLGATRELSRE-GYLLVVFER 33 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er 33 (143)
.++++|+|+|..|..++..|.+. +.++.+++|
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 47899999999999999999998 678999988
No 413
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.44 E-value=0.0051 Score=45.56 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=30.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~ 36 (143)
.++|+|||+|..|.+.|..|.+.|+ +|.++++++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~ 42 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAE 42 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 3689999999999999999999985 8999998653
No 414
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.43 E-value=0.0032 Score=47.50 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=26.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREG-YLLVVFERAKGL 37 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~~ 37 (143)
.++++||.|+++|++|++|.+.+ .++..|||++..
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 47899999999999999999885 899999998763
No 415
>PRK08017 oxidoreductase; Provisional
Probab=96.42 E-value=0.0068 Score=43.14 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=31.5
Q ss_pred CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
|.++|+|.|| |..|..+|..|.++|++|.++.|+.
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6678999999 9999999999999999999988764
No 416
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.40 E-value=0.0059 Score=47.99 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=30.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+++|+|+|.|-+|+++|..|.+.|.+|+++++.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 478999999999999999999999999999974
No 417
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.40 E-value=0.0065 Score=51.62 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=31.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|+|||||..|+.+|..+.+.|.+|+++.+++
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4789999999999999999999999999998764
No 418
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.39 E-value=0.0066 Score=46.49 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=32.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~ 36 (143)
+++|+|||||-.|..+|..|++++ .+|++-+|+..
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 479999999999999999999998 89999999743
No 419
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=96.38 E-value=0.0055 Score=45.49 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=31.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
-++|+|||||.-|-..|..++..|++|++++.++.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~ 37 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE 37 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence 47999999999999999999998899999998744
No 420
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.37 E-value=0.0048 Score=49.59 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=30.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSRE-GYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~~~ 36 (143)
.+.+|||||.+|...|..|.+. .++|.++|+...
T Consensus 58 yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~ 92 (623)
T KOG1238|consen 58 YDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD 92 (623)
T ss_pred CCEEEECCCchhHHHHHhhccCCCceEEEEecCCC
Confidence 4689999999999999999987 789999999755
No 421
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.36 E-value=0.0073 Score=46.59 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|+|+|.|..|..+|..|+..|.+|+++|+.+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 5789999999999999999999999999999765
No 422
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.36 E-value=0.0062 Score=46.51 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=31.1
Q ss_pred CCcEEEEc-CCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIG-AGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIG-aG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
.++|+||| .|..|-+.|..|++.|++|+++++.+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 36899999 89999999999999999999999854
No 423
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.36 E-value=0.006 Score=45.10 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=31.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|+|.|||.|..|...|..|.+.|++|.+|+|.+.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 4799999999999999999999999999998754
No 424
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.34 E-value=0.0082 Score=44.57 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=30.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~ 36 (143)
++|+|||+|..|.++|..|...| .++.++++...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 48999999999999999999998 48999998654
No 425
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.33 E-value=0.0051 Score=50.75 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=30.8
Q ss_pred CcEEEEcCCHHHHHHHHHHH-HCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELS-REGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~-~~g~~v~v~Er~~~ 36 (143)
++|+|||||..|...|..++ ..|++|+++|.++.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 58999999999999999998 88999999997654
No 426
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.33 E-value=0.0048 Score=51.11 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||||.-|...|..++..|++|+++|..+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 5799999999999999999999999999997654
No 427
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.32 E-value=0.0086 Score=41.80 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=30.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~ 34 (143)
.++|+|||+|--|..+|..|.+.|+ ++++++..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999999 69999875
No 428
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.29 E-value=0.0059 Score=44.84 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=30.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+|.|||.|..|...|..|.+.|++|++|+|++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 589999999999999999999999999998754
No 429
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.29 E-value=0.0084 Score=44.11 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=30.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~ 35 (143)
.++|+|+|+|-+|-+++.+|.+.|. +++|+.|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4689999999999999999999998 799999864
No 430
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=0.0089 Score=47.52 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=34.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQV 47 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~ 47 (143)
.+|+|||||.+|+-||.+.++.|.++.++=-+...-|...+.|..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaI 49 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAI 49 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeeccccccc
Confidence 489999999999999999999999999987655433344444433
No 431
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0059 Score=46.00 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=28.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFER 33 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er 33 (143)
.+.+|||||.+||++|...+..|.+|.+++-
T Consensus 20 yDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 20 YDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred ccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 4689999999999999999999999999984
No 432
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.22 E-value=0.014 Score=38.40 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=29.4
Q ss_pred CcEEEEcC-CHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409 3 CHAALIGA-GTAGLGATRELSREGY--LLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGa-G~~Gl~~A~~L~~~g~--~v~v~Er~~ 35 (143)
+||+|||+ |.-|-++|..|...+. ++.++++..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 58999999 9999999999998865 799999864
No 433
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.21 E-value=0.0085 Score=44.79 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=32.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|+|+|.=|.+.|..|.+.|++|+++-|++.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~ 35 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEE 35 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHH
Confidence 47899999999999999999999999999988655
No 434
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.21 E-value=0.0096 Score=46.20 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=32.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|+|.|..|..+|..|+..|.+|+++|+.+.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 57899999999999999999999999999997653
No 435
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.20 E-value=0.0076 Score=47.19 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=29.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+++|+|+|.|.+|.++|..|++ |.+|+++|..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 4789999999999999999995 9999999954
No 436
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.20 E-value=0.0071 Score=49.85 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=30.5
Q ss_pred CcEEEEcCCHHHHHHHHHHH-HCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELS-REGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~-~~g~~v~v~Er~~~ 36 (143)
++|+|||+|..|...|..++ +.|++|+++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 57999999999999999888 58999999998754
No 437
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.19 E-value=0.011 Score=38.42 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=29.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~ 34 (143)
.++|+|+|+|..|..+|..|.+.|+ ++++++..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4789999999999999999999998 79999863
No 438
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.17 E-value=0.01 Score=42.18 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=30.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCe---EEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYL---LVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~---v~v~Er~ 34 (143)
.++|+|+|+|-+|..+|..|.+.|.+ +.+++|.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 46899999999999999999999974 9999987
No 439
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.12 E-value=0.0052 Score=45.88 Aligned_cols=36 Identities=33% Similarity=0.579 Sum_probs=31.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409 3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT 38 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G 38 (143)
.+.+|||||+-|++.|..|.-+ +.+|.|+|+...++
T Consensus 49 ~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 49 YDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 4689999999999999999865 88999999877643
No 440
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.12 E-value=0.014 Score=43.75 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=30.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~ 36 (143)
+||+|||+|..|.++|..++..|+ ++.++|..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 589999999999999999999886 8999997654
No 441
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.10 E-value=0.009 Score=46.74 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=30.6
Q ss_pred CCcEEEEcCCHHHHH-HHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLG-ATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~-~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|+|||.|-+|++ +|..|.+.|++|++.|...
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 368999999999999 6999999999999999754
No 442
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.10 E-value=0.013 Score=43.97 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=31.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|.|||.|..|..+|..|+..|.+|..|++.+.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~ 180 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPN 180 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChh
Confidence 57899999999999999999999999999997643
No 443
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.10 E-value=0.011 Score=39.86 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+|+++|+|=|..|-.+|..|+..|.+|+|+|..|.
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 57899999999999999999999999999998654
No 444
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.01 Score=46.85 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=31.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|.|+|.|-+|+++|..|++.|++|+++|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4689999999999999999999999999999643
No 445
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.07 E-value=0.01 Score=44.18 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=31.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|||+|+|+|.-|.-.|..|++.|.+|+++=|.+.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 6899999999999999999999988998887764
No 446
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.06 E-value=0.011 Score=45.63 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=31.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|+|||-|.+|.++|..|++.|++|+.++++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 5899999999999999999999999999997643
No 447
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.05 E-value=0.016 Score=42.55 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=32.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+.++|+|||.|..|-+.|..|+++|+.+.++.+...
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 357999999999999999999999999988887544
No 448
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.05 E-value=0.011 Score=43.77 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=31.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|.|||.|.-|...|..|.+.|+++++++|++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~ 34 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPE 34 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 4799999999999999999999999999998654
No 449
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.01 E-value=0.014 Score=44.34 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=31.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|.|||.|..|-+.|..|++.|+++.++.+.+.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~ 34 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPS 34 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 4799999999999999999999999999987654
No 450
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.00 E-value=0.016 Score=38.20 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=30.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~ 36 (143)
.++|+|+|+|..|...+..|.+.| .+++++.|+..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~ 54 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE 54 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 478999999999999999999985 78999987643
No 451
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.00 E-value=0.014 Score=47.71 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=30.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~ 35 (143)
+++|+|||+|..|+.+|..|.+.|. +|+++.+++
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999987 699998765
No 452
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=95.97 E-value=0.015 Score=44.00 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=29.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC--------CeEEEEeeC
Q 038409 4 HAALIGAGTAGLGATRELSREG--------YLLVVFERA 34 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g--------~~v~v~Er~ 34 (143)
+|+|||+|.-|.++|..|.+.| ++|+++.|.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~ 39 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE 39 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec
Confidence 6899999999999999999999 999999884
No 453
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.97 E-value=0.013 Score=46.51 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=31.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|+|+|+|..|+.++..++..|.+|+++++++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5899999999999999999999999999998754
No 454
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.97 E-value=0.01 Score=46.75 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=31.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+|.|||.|.-|..+|..|.++|++|++|+|.+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5899999999999999999999999999998755
No 455
>PLN02256 arogenate dehydrogenase
Probab=95.96 E-value=0.017 Score=42.93 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=30.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|.|||.|..|-+.|..|.+.|++|.+++++.
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 4689999999999999999999999999998764
No 456
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.93 E-value=0.012 Score=45.71 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=31.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|+|+|+|+|..|..+|..|.+.|++++++++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 5899999999999999999999999999998544
No 457
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.93 E-value=0.016 Score=35.14 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=28.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC---CeEEEE-eeCCC
Q 038409 4 HAALIGAGTAGLGATRELSREG---YLLVVF-ERAKG 36 (143)
Q Consensus 4 ~v~IIGaG~~Gl~~A~~L~~~g---~~v~v~-Er~~~ 36 (143)
||.|||+|--|.+.+..|.+.| .++.++ +|++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence 6899999999999999999999 899855 77643
No 458
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.92 E-value=0.019 Score=42.89 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=30.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~ 36 (143)
++||+|||+|..|-++|..|...+. ++.+|+.+..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 3589999999999999999999887 7999997554
No 459
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.90 E-value=0.018 Score=41.92 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++++|+|+|-.|.+++..|.+.|.+++++.|..
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999998864
No 460
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.90 E-value=0.014 Score=43.14 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=31.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|.|||.|.-|...|..|.+.|+++++|+|.+.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~ 34 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQE 34 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999998643
No 461
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.87 E-value=0.027 Score=38.46 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|.|||.|-.|-..|..|+.-|.+|..|++...
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 57999999999999999999999999999998765
No 462
>PLN02494 adenosylhomocysteinase
Probab=95.86 E-value=0.019 Score=45.09 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=31.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|+|.|..|..+|..++..|.+|.++|+.+.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 57899999999999999999999999999998653
No 463
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.84 E-value=0.021 Score=42.11 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=29.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~ 35 (143)
+++++|+|||=+|.++|.+|.+.|.+ |+|+.|+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46899999998889999999999986 99998864
No 464
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.81 E-value=0.019 Score=43.18 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=30.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+++|.|||.|..|.+.|..|+..|++|.++.+.
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~ 49 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLRE 49 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECC
Confidence 578999999999999999999999999988765
No 465
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.80 E-value=0.022 Score=44.97 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=29.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~ 36 (143)
+++|+|||+|..|+.+|..+.+.|. +|+++|+.+.
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4789999999999999888877764 7999997654
No 466
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.80 E-value=0.02 Score=43.21 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=30.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~ 34 (143)
.++|+|||+|--|..+|..|.+.|+ +++|+|+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4689999999999999999999998 89999875
No 467
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.80 E-value=0.017 Score=42.55 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=31.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
++|++||-|.-|..+|..|.++|+.+++|.|.+.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ 34 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE 34 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChh
Confidence 4899999999999999999999999999999755
No 468
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.78 E-value=0.021 Score=35.86 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=28.2
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 5 AALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 5 v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|+|+|.|..|...+..|.+.+.+++++|+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 68999999999999999998889999998754
No 469
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.74 E-value=0.016 Score=45.14 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL 42 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~ 42 (143)
.+|+|+|.|+.-..+|.+|++.|.+|..++|++--||.|.
T Consensus 5 yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~a 44 (438)
T PF00996_consen 5 YDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWA 44 (438)
T ss_dssp ESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-
T ss_pred ceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchh
Confidence 4799999999999999999999999999999999997764
No 470
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.74 E-value=0.024 Score=41.48 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=31.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~ 36 (143)
+++|+|+|+|-+|.+++.+|.+.| .+|+++.|+..
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~ 158 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVE 158 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 468999999999999999999999 68999988643
No 471
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.73 E-value=0.025 Score=41.35 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=29.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~ 34 (143)
..+|+|||+|-.|..+|.+|.+.|+ +++|+|..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4689999999999999999999996 89999864
No 472
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.70 E-value=0.025 Score=44.40 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~ 36 (143)
+++|+|||+|..|+.+|..+.+.|. +|++++|++.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 4789999999999999999999985 7999998754
No 473
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.70 E-value=0.027 Score=42.16 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=30.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~ 36 (143)
.+||+|||||..|.++|..|...| .++.+++....
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 468999999999999999999888 58999997653
No 474
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.69 E-value=0.017 Score=45.13 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=30.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|.|+|.|-+|+++|..|.+.|++|++.|...
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~ 42 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP 42 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence 3689999999999999999999999999999653
No 475
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.68 E-value=0.025 Score=44.50 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++|+|||.|..|..+|..|+..|.+|+++|+.+.
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~ 288 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPI 288 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 58999999999999999999999999999987643
No 476
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.67 E-value=0.026 Score=43.05 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=30.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC-------CeEEEEeeCCC
Q 038409 3 CHAALIGAGTAGLGATRELSREG-------YLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g-------~~v~v~Er~~~ 36 (143)
++|+|||+|.-|.+.|..|.+.| ++|+++-|++.
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~ 52 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI 52 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc
Confidence 58999999999999999999987 79999988764
No 477
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.65 E-value=0.02 Score=42.58 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=29.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~ 35 (143)
+++|+|||+|..|..++..|.+.| .++++++|.+
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 578999999999999999999865 5899999864
No 478
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.65 E-value=0.02 Score=43.14 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=28.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++|+|||+|.-|.+.|..|++.| .++++-+++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~ 39 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSA 39 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCH
Confidence 468999999999999999999998 577776543
No 479
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=95.64 E-value=0.022 Score=42.06 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=30.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
|+|.|||.|.-|...|..|.+.|++++++++.+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~ 33 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGP 33 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 379999999999999999999999999998754
No 480
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.64 E-value=0.03 Score=38.61 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=30.0
Q ss_pred CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+++++|+|| |..|..++..|.+.|.+++++.|+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 468999997 9999999999999999999998753
No 481
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.63 E-value=0.015 Score=41.43 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=31.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
.+.|+|||||.-|--+|.-.+..|++|.+++++..
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 36899999999999999999999999999998654
No 482
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.57 E-value=0.029 Score=40.72 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=30.9
Q ss_pred CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|++.|+|.|| |-.|..+|..|.+.|++|.+..|++.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~ 39 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEE 39 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 4578999998 88999999999999999999987643
No 483
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.55 E-value=0.026 Score=43.80 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=30.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~ 35 (143)
+++|+|||+|..|..++..|...|. +++++.|..
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 4689999999999999999999997 799999864
No 484
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.54 E-value=0.031 Score=39.68 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=28.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFE 32 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~E 32 (143)
+++|+|||||-.+.--+..|.+.|.+|+|+-
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4689999999999999999999999999994
No 485
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.53 E-value=0.03 Score=41.11 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~ 36 (143)
+++|+|||+|=++-+++.+|.+.|. +++|+.|...
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ 160 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPD 160 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 4689999999999999999999997 7999988643
No 486
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.51 E-value=0.028 Score=43.70 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=32.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
+++++|+|+|..|..+|..|.+.|++++++|+.+.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 47899999999999999999999999999998754
No 487
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.50 E-value=0.032 Score=41.08 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=30.2
Q ss_pred CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+|+|+|||+|- .|..+|..|.+.|..|+++.+.
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 58999999996 9999999999999999999874
No 488
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.49 E-value=0.029 Score=41.60 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=31.0
Q ss_pred CCcEEEEcCC-HHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGAG-TAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG-~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
+|+|+|||.| +-|.-+|..|.++|++|+++.+..
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t 193 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS 193 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence 6899999996 999999999999999999997653
No 489
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=95.49 E-value=0.031 Score=39.20 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=30.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~ 34 (143)
+|++.|+|+|..|-+.|..|.+.|++|.+--|+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 479999999999999999999999999998554
No 490
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.48 E-value=0.026 Score=44.36 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=28.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~ 35 (143)
+++|+|||+|..|+.+|..+.+.|. +|++.+..+
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 4789999999999999998888876 788776544
No 491
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.47 E-value=0.031 Score=43.37 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=30.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~ 35 (143)
+++|+|||+|..|..++..|...| .+++++.|..
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~ 214 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY 214 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 468999999999999999999999 6899998864
No 492
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.46 E-value=0.024 Score=42.84 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=27.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~ 35 (143)
.++|+|||||.++..++..|.+.+. +|+++=|++
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 4789999999999999999998865 788887764
No 493
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.45 E-value=0.033 Score=42.06 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=30.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~ 34 (143)
..+|+|||+|--|..+|..|.+.|+ ++++++..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4689999999999999999999999 89999974
No 494
>PRK08507 prephenate dehydrogenase; Validated
Probab=95.44 E-value=0.026 Score=41.18 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=28.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409 3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAK 35 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~ 35 (143)
++|.|||.|..|-+.|..|.+.|+ ++.++++++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~ 35 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNE 35 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 479999999999999999999986 688888754
No 495
>PRK08655 prephenate dehydrogenase; Provisional
Probab=95.42 E-value=0.029 Score=43.75 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=30.2
Q ss_pred CcEEEEc-CCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409 3 CHAALIG-AGTAGLGATRELSREGYLLVVFERAKG 36 (143)
Q Consensus 3 ~~v~IIG-aG~~Gl~~A~~L~~~g~~v~v~Er~~~ 36 (143)
|+|+||| .|..|.+.|..|.+.|++|+++.|.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~ 35 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPK 35 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 4799998 699999999999999999999998644
No 496
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.40 E-value=0.013 Score=38.05 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=26.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVFE 32 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~E 32 (143)
++|.|||+|-.|...|.+|.+.|+.|.-+.
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~ 40 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVY 40 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEES
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 689999999999999999999999887664
No 497
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.013 Score=44.40 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=25.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEE
Q 038409 3 CHAALIGAGTAGLGATRELSREGYLLVVF 31 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~ 31 (143)
.+|+|||+|++|.++|+..+++|++.-++
T Consensus 212 yDVLvVGgGPAgaaAAiYaARKGiRTGl~ 240 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLV 240 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence 47999999999999999999999976544
No 498
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.36 E-value=0.16 Score=39.76 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=25.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEe
Q 038409 3 CHAALIGAGTAGLGATRELSREGY--LLVVFE 32 (143)
Q Consensus 3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~E 32 (143)
++++|||+|.+|..|+..+++.|+ +++++-
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~ 106 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVK 106 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEe
Confidence 679999999999999999999987 455553
No 499
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.36 E-value=0.037 Score=39.33 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=29.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409 2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA 34 (143)
Q Consensus 2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~ 34 (143)
.++|+|||+|-.|..+|..|.+.|+ ++++++..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4689999999999999999999998 78888753
No 500
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.35 E-value=0.039 Score=41.96 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=30.8
Q ss_pred CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409 2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAK 35 (143)
Q Consensus 2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~ 35 (143)
.|+|+|.|| |..|..++..|.+.|++|+.+.|..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 478999998 9999999999999999999998753
Done!