Query 038410
Match_columns 850
No_of_seqs 792 out of 5883
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 10:45:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2230 Cfa Cyclopropane fatty 100.0 5.2E-67 1.1E-71 524.4 28.2 279 548-833 5-283 (283)
2 PRK11705 cyclopropane fatty ac 100.0 7.2E-64 1.6E-68 542.7 40.7 341 474-837 35-376 (383)
3 PF02353 CMAS: Mycolic acid cy 100.0 2.3E-64 5E-69 519.2 24.1 272 554-829 1-273 (273)
4 COG2907 Predicted NAD/FAD-bind 100.0 3E-52 6.6E-57 413.4 30.4 406 1-419 9-426 (447)
5 COG1232 HemY Protoporphyrinoge 100.0 1.3E-35 2.7E-40 321.0 28.4 391 1-414 1-443 (444)
6 TIGR00562 proto_IX_ox protopor 100.0 2.2E-34 4.7E-39 328.6 32.6 389 1-415 3-458 (462)
7 PRK12416 protoporphyrinogen ox 100.0 1.9E-34 4.2E-39 328.3 31.6 399 1-415 2-459 (463)
8 PRK11883 protoporphyrinogen ox 100.0 3.1E-33 6.7E-38 318.7 31.7 396 1-415 1-450 (451)
9 PLN02576 protoporphyrinogen ox 100.0 3.5E-33 7.7E-38 321.0 30.1 392 1-416 13-486 (496)
10 PRK07208 hypothetical protein; 100.0 3E-30 6.4E-35 295.5 34.3 395 1-417 5-461 (479)
11 PRK07233 hypothetical protein; 100.0 2.8E-30 6.1E-35 293.0 30.3 392 2-416 1-430 (434)
12 PLN02268 probable polyamine ox 100.0 3.6E-30 7.9E-35 291.0 28.1 383 1-415 1-432 (435)
13 TIGR02731 phytoene_desat phyto 100.0 5.6E-30 1.2E-34 290.8 29.2 404 2-414 1-453 (453)
14 PLN02612 phytoene desaturase 100.0 1.1E-29 2.3E-34 292.2 30.4 299 1-304 94-404 (567)
15 TIGR02732 zeta_caro_desat caro 100.0 1.9E-29 4.2E-34 284.8 30.0 296 2-302 1-320 (474)
16 KOG1276 Protoporphyrinogen oxi 100.0 6.6E-30 1.4E-34 262.4 22.4 396 1-414 12-490 (491)
17 PLN02487 zeta-carotene desatur 100.0 4.4E-29 9.6E-34 282.7 30.2 412 1-417 76-553 (569)
18 PLN02529 lysine-specific histo 100.0 2.4E-28 5.3E-33 281.5 30.5 384 1-416 161-597 (738)
19 smart00828 PKS_MT Methyltransf 100.0 1.9E-28 4.2E-33 250.7 20.8 205 617-837 1-206 (224)
20 PLN02568 polyamine oxidase 100.0 5E-28 1.1E-32 274.7 26.1 291 1-306 6-342 (539)
21 PLN02328 lysine-specific histo 100.0 2.6E-27 5.7E-32 273.8 29.0 386 1-416 239-678 (808)
22 PLN02244 tocopherol O-methyltr 100.0 3.8E-27 8.2E-32 253.8 28.4 272 554-835 52-340 (340)
23 PLN03000 amine oxidase 100.0 1.3E-26 2.8E-31 267.1 30.1 384 1-416 185-622 (881)
24 TIGR03467 HpnE squalene-associ 100.0 1.3E-26 2.8E-31 261.8 29.5 381 14-414 1-418 (419)
25 PLN02676 polyamine oxidase 100.0 1.7E-26 3.8E-31 260.7 27.3 387 1-416 27-472 (487)
26 TIGR02733 desat_CrtD C-3',4' d 99.9 2E-25 4.4E-30 255.9 32.1 295 1-302 2-331 (492)
27 COG1231 Monoamine oxidase [Ami 99.9 5E-26 1.1E-30 239.3 20.8 390 1-415 8-445 (450)
28 TIGR02734 crtI_fam phytoene de 99.9 1.2E-24 2.6E-29 250.4 28.8 285 3-300 1-312 (502)
29 PLN02976 amine oxidase 99.9 6.9E-25 1.5E-29 257.9 26.8 379 1-416 694-1185(1713)
30 KOG0685 Flavin-containing amin 99.9 5.6E-25 1.2E-29 230.6 20.9 274 2-307 23-330 (498)
31 COG3380 Predicted NAD/FAD-depe 99.9 4.5E-26 9.7E-31 220.4 11.7 299 2-415 3-329 (331)
32 KOG0029 Amine oxidase [Seconda 99.9 3.8E-24 8.3E-29 238.1 22.8 382 1-416 16-458 (501)
33 PF01593 Amino_oxidase: Flavin 99.9 2.8E-25 6E-30 252.8 11.8 397 10-414 1-450 (450)
34 TIGR02730 carot_isom carotene 99.9 1.6E-22 3.4E-27 231.5 31.1 294 2-305 2-327 (493)
35 COG2226 UbiE Methylase involve 99.9 1.8E-23 3.8E-28 207.6 15.8 193 555-773 12-225 (238)
36 PTZ00098 phosphoethanolamine N 99.9 3.4E-22 7.4E-27 207.5 25.5 221 604-834 41-263 (263)
37 PLN02336 phosphoethanolamine N 99.9 2.4E-21 5.2E-26 220.7 26.4 219 604-834 255-475 (475)
38 PF01209 Ubie_methyltran: ubiE 99.9 1.7E-22 3.7E-27 204.1 12.8 148 556-727 9-159 (233)
39 COG3349 Uncharacterized conser 99.9 7.3E-22 1.6E-26 212.5 17.7 290 1-302 1-314 (485)
40 COG1233 Phytoene dehydrogenase 99.9 6.2E-21 1.4E-25 216.2 24.5 261 1-273 4-286 (487)
41 PLN02233 ubiquinone biosynthes 99.8 6.4E-20 1.4E-24 190.3 17.9 193 556-774 35-250 (261)
42 PLN02396 hexaprenyldihydroxybe 99.8 2.1E-19 4.6E-24 189.4 16.0 165 614-784 130-299 (322)
43 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.9E-20 6.3E-25 180.1 7.6 161 614-783 58-224 (243)
44 TIGR02752 MenG_heptapren 2-hep 99.8 3.5E-19 7.5E-24 183.2 15.9 192 556-774 7-220 (231)
45 KOG1540 Ubiquinone biosynthesi 99.8 2.7E-19 5.8E-24 172.1 13.7 147 557-726 63-219 (296)
46 TIGR00031 UDP-GALP_mutase UDP- 99.8 1.6E-17 3.5E-22 179.2 26.9 361 1-414 2-376 (377)
47 KOG1270 Methyltransferases [Co 99.8 1.9E-19 4.1E-24 174.9 5.6 152 616-773 90-250 (282)
48 PRK11036 putative S-adenosyl-L 99.8 1.1E-17 2.3E-22 174.1 16.7 168 601-774 31-209 (255)
49 PRK11207 tellurite resistance 99.8 3.6E-17 7.7E-22 162.6 19.1 150 606-772 21-170 (197)
50 PRK14103 trans-aconitate 2-met 99.8 2.7E-17 5.9E-22 171.2 18.1 163 599-772 13-184 (255)
51 PTZ00363 rab-GDP dissociation 99.7 1.3E-16 2.8E-21 176.5 23.8 252 2-265 6-287 (443)
52 TIGR00452 methyltransferase, p 99.7 5E-17 1.1E-21 170.6 19.5 170 599-775 105-276 (314)
53 PF12847 Methyltransf_18: Meth 99.7 2.9E-17 6.2E-22 148.2 14.5 107 615-721 1-111 (112)
54 PRK15068 tRNA mo(5)U34 methylt 99.7 5.9E-17 1.3E-21 172.6 18.5 169 601-775 108-277 (322)
55 TIGR00477 tehB tellurite resis 99.7 1.6E-16 3.5E-21 157.7 18.3 149 606-772 21-169 (195)
56 PRK01683 trans-aconitate 2-met 99.7 1.8E-16 3.8E-21 165.8 18.1 165 598-771 14-186 (258)
57 PLN02490 MPBQ/MSBQ methyltrans 99.7 2.7E-16 5.9E-21 166.2 16.0 156 605-777 102-261 (340)
58 PF08241 Methyltransf_11: Meth 99.7 1.5E-16 3.2E-21 138.9 11.0 94 620-719 1-95 (95)
59 PF03848 TehB: Tellurite resis 99.7 2E-15 4.4E-20 145.3 18.7 147 606-770 21-167 (192)
60 PF13847 Methyltransf_31: Meth 99.7 6E-16 1.3E-20 147.6 14.1 107 614-723 2-112 (152)
61 PRK07580 Mg-protoporphyrin IX 99.7 8.8E-16 1.9E-20 157.9 15.9 216 554-786 4-229 (230)
62 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 8.3E-16 1.8E-20 157.5 15.7 189 558-775 3-213 (223)
63 TIGR02021 BchM-ChlM magnesium 99.7 1.2E-15 2.6E-20 155.2 16.6 167 602-779 40-213 (219)
64 TIGR03329 Phn_aa_oxid putative 99.7 1.6E-15 3.4E-20 172.2 19.3 189 212-417 183-395 (460)
65 PRK00216 ubiE ubiquinone/menaq 99.7 1.4E-15 2.9E-20 157.7 17.0 167 604-775 40-228 (239)
66 PRK10258 biotin biosynthesis p 99.7 9.9E-16 2.2E-20 159.4 15.9 164 599-777 26-191 (251)
67 PRK08317 hypothetical protein; 99.7 1.2E-14 2.6E-19 150.7 22.7 115 605-723 9-126 (241)
68 PRK12335 tellurite resistance 99.7 5.3E-15 1.2E-19 156.3 20.1 139 615-771 120-258 (287)
69 PRK11873 arsM arsenite S-adeno 99.7 1.6E-15 3.5E-20 159.8 16.1 155 611-772 73-230 (272)
70 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.8E-15 3.9E-20 156.3 15.9 111 613-724 54-167 (247)
71 TIGR02716 C20_methyl_CrtF C-20 99.6 5.2E-15 1.1E-19 158.5 17.8 159 604-769 138-303 (306)
72 PRK05785 hypothetical protein; 99.6 2.1E-15 4.5E-20 152.9 12.8 137 557-725 12-149 (226)
73 TIGR03840 TMPT_Se_Te thiopurin 99.6 2.1E-14 4.5E-19 143.4 19.4 148 607-774 26-189 (213)
74 PF13489 Methyltransf_23: Meth 99.6 1.2E-15 2.7E-20 147.4 10.2 137 613-769 20-160 (161)
75 TIGR02469 CbiT precorrin-6Y C5 99.6 1E-14 2.2E-19 134.2 15.5 116 601-722 5-123 (124)
76 PRK13977 myosin-cross-reactive 99.6 2E-14 4.3E-19 160.0 20.4 233 1-269 23-294 (576)
77 PRK00107 gidB 16S rRNA methylt 99.6 9.6E-15 2.1E-19 142.3 15.4 102 613-721 43-145 (187)
78 PLN02585 magnesium protoporphy 99.6 6.5E-15 1.4E-19 155.0 15.2 149 615-775 144-302 (315)
79 TIGR00740 methyltransferase, p 99.6 6.4E-15 1.4E-19 151.9 14.6 112 613-725 51-165 (239)
80 PRK00711 D-amino acid dehydrog 99.6 3.3E-14 7.1E-19 160.2 20.9 202 212-430 201-414 (416)
81 TIGR01377 soxA_mon sarcosine o 99.6 1.4E-14 3.1E-19 161.1 17.5 207 212-433 145-375 (380)
82 PF13649 Methyltransf_25: Meth 99.6 3E-15 6.5E-20 131.9 8.8 95 619-715 1-101 (101)
83 PRK05134 bifunctional 3-demeth 99.6 1.3E-14 2.8E-19 149.3 14.6 183 597-787 30-218 (233)
84 PF08003 Methyltransf_9: Prote 99.6 3.8E-14 8.2E-19 142.9 16.8 165 603-774 103-269 (315)
85 PRK13255 thiopurine S-methyltr 99.6 8.3E-14 1.8E-18 139.6 18.7 147 607-773 29-191 (218)
86 TIGR00138 gidB 16S rRNA methyl 99.6 2.6E-14 5.6E-19 139.3 14.6 99 615-720 42-141 (181)
87 COG4106 Tam Trans-aconitate me 99.6 8.6E-15 1.9E-19 137.7 10.7 164 600-772 15-186 (257)
88 PRK11259 solA N-methyltryptoph 99.6 3.7E-14 7.9E-19 157.7 17.3 200 212-432 149-374 (376)
89 PRK13944 protein-L-isoaspartat 99.6 4.2E-14 9.1E-19 141.5 14.7 111 603-721 60-173 (205)
90 PF13450 NAD_binding_8: NAD(P) 99.6 8E-15 1.7E-19 117.3 7.5 67 5-71 1-68 (68)
91 PF05175 MTS: Methyltransferas 99.6 2.7E-14 5.9E-19 138.4 12.8 129 585-720 7-139 (170)
92 PF05401 NodS: Nodulation prot 99.6 3E-14 6.4E-19 134.8 12.1 118 601-722 28-147 (201)
93 TIGR00080 pimt protein-L-isoas 99.6 3.9E-14 8.4E-19 143.3 13.6 140 602-751 64-207 (215)
94 PRK08287 cobalt-precorrin-6Y C 99.5 1.5E-13 3.3E-18 135.9 17.3 111 605-722 21-132 (187)
95 KOG4254 Phytoene desaturase [C 99.5 4.7E-14 1E-18 146.7 14.0 82 200-281 252-335 (561)
96 KOG1271 Methyltransferases [Ge 99.5 6E-14 1.3E-18 128.0 12.8 126 598-723 46-183 (227)
97 TIGR03587 Pse_Me-ase pseudamin 99.5 7.4E-14 1.6E-18 138.9 14.4 122 593-725 23-146 (204)
98 TIGR00537 hemK_rel_arch HemK-r 99.5 1.9E-13 4.2E-18 134.1 16.8 140 606-775 10-168 (179)
99 PRK12409 D-amino acid dehydrog 99.5 7.7E-13 1.7E-17 148.6 23.3 67 203-269 185-259 (410)
100 PF08242 Methyltransf_12: Meth 99.5 1.4E-15 3.1E-20 133.6 0.9 95 620-717 1-99 (99)
101 PF01266 DAO: FAD dependent ox 99.5 1.3E-14 2.9E-19 160.0 8.5 67 203-270 135-205 (358)
102 KOG4300 Predicted methyltransf 99.5 6.5E-14 1.4E-18 130.7 11.4 112 610-724 71-185 (252)
103 TIGR01373 soxB sarcosine oxida 99.5 5.6E-13 1.2E-17 149.6 21.2 200 212-431 183-398 (407)
104 PRK01747 mnmC bifunctional tRN 99.5 2.2E-13 4.7E-18 161.5 18.6 65 203-268 396-463 (662)
105 PRK00377 cbiT cobalt-precorrin 99.5 3E-13 6.4E-18 134.9 16.7 112 606-722 31-146 (198)
106 PRK15001 SAM-dependent 23S rib 99.5 2.3E-13 5E-18 146.2 16.0 131 585-721 204-340 (378)
107 PRK13942 protein-L-isoaspartat 99.5 2.2E-13 4.7E-18 137.0 14.3 112 601-721 62-176 (212)
108 PRK06922 hypothetical protein; 99.5 1.7E-13 3.6E-18 153.0 14.6 112 612-725 415-541 (677)
109 smart00138 MeTrc Methyltransfe 99.5 1.5E-13 3.3E-18 142.6 13.4 133 588-720 72-241 (264)
110 PRK00517 prmA ribosomal protei 99.5 3E-13 6.6E-18 139.9 15.5 155 571-774 85-240 (250)
111 COG0562 Glf UDP-galactopyranos 99.5 1.3E-12 2.8E-17 130.9 18.9 234 2-270 3-243 (374)
112 PRK06202 hypothetical protein; 99.5 1.1E-13 2.5E-18 141.9 12.0 154 613-774 58-224 (232)
113 TIGR01983 UbiG ubiquinone bios 99.5 2E-13 4.4E-18 139.7 13.8 155 615-774 45-205 (224)
114 TIGR02072 BioC biotin biosynth 99.5 2.2E-13 4.8E-18 141.2 13.4 155 599-770 15-174 (240)
115 COG2081 Predicted flavoprotein 99.5 8.8E-13 1.9E-17 137.5 17.3 65 203-267 102-166 (408)
116 PF07021 MetW: Methionine bios 99.5 8.4E-13 1.8E-17 124.9 15.5 154 605-777 5-172 (193)
117 PLN02336 phosphoethanolamine N 99.5 4E-13 8.7E-18 153.3 15.7 119 602-724 24-145 (475)
118 PRK04266 fibrillarin; Provisio 99.5 8.2E-13 1.8E-17 132.9 15.4 143 609-775 66-213 (226)
119 PRK14967 putative methyltransf 99.5 2.5E-12 5.4E-17 130.9 19.1 116 604-722 25-160 (223)
120 PRK00121 trmB tRNA (guanine-N( 99.5 3.1E-13 6.8E-18 134.8 11.4 106 615-721 40-156 (202)
121 COG2242 CobL Precorrin-6B meth 99.5 1.5E-12 3.3E-17 122.3 14.9 114 604-724 23-138 (187)
122 TIGR00406 prmA ribosomal prote 99.5 9.1E-13 2E-17 139.0 15.1 136 572-723 126-261 (288)
123 COG0665 DadA Glycine/D-amino a 99.5 4.5E-13 9.7E-18 149.6 13.6 192 212-417 156-368 (387)
124 PLN03075 nicotianamine synthas 99.5 7.8E-13 1.7E-17 135.9 13.8 107 614-721 122-233 (296)
125 COG2518 Pcm Protein-L-isoaspar 99.4 1.1E-12 2.5E-17 126.1 13.7 111 602-722 59-170 (209)
126 COG2264 PrmA Ribosomal protein 99.4 1.8E-12 4E-17 132.4 15.5 157 575-773 132-289 (300)
127 PRK09489 rsmC 16S ribosomal RN 99.4 1.7E-12 3.6E-17 139.1 15.9 128 585-721 172-303 (342)
128 COG2813 RsmC 16S RNA G1207 met 99.4 1.7E-12 3.7E-17 131.6 14.7 131 582-721 131-266 (300)
129 COG4976 Predicted methyltransf 99.4 7.2E-14 1.6E-18 132.4 4.1 181 560-774 84-267 (287)
130 COG4123 Predicted O-methyltran 99.4 7.3E-13 1.6E-17 131.8 11.2 115 606-720 35-169 (248)
131 PF13659 Methyltransf_26: Meth 99.4 7.5E-13 1.6E-17 120.3 9.8 106 616-721 1-115 (117)
132 TIGR01177 conserved hypothetic 99.4 1.6E-12 3.4E-17 140.3 13.9 116 605-722 172-295 (329)
133 PRK14968 putative methyltransf 99.4 7.9E-12 1.7E-16 124.2 17.2 115 606-721 14-148 (188)
134 PRK07402 precorrin-6B methylas 99.4 4.3E-12 9.4E-17 126.5 15.3 115 602-723 27-144 (196)
135 TIGR03533 L3_gln_methyl protei 99.4 5.1E-12 1.1E-16 132.7 16.4 107 614-720 120-250 (284)
136 TIGR02081 metW methionine bios 99.4 1.6E-12 3.5E-17 129.3 11.9 153 605-773 5-168 (194)
137 TIGR00091 tRNA (guanine-N(7)-) 99.4 1.1E-12 2.4E-17 130.2 10.3 106 615-721 16-132 (194)
138 KOG2820 FAD-dependent oxidored 99.4 9.4E-12 2E-16 125.5 16.3 62 212-274 153-217 (399)
139 PRK00312 pcm protein-L-isoaspa 99.4 3.5E-12 7.5E-17 129.0 13.5 110 603-722 66-176 (212)
140 PRK14121 tRNA (guanine-N(7)-)- 99.4 3.6E-12 7.8E-17 135.9 13.7 115 606-721 113-235 (390)
141 PF06325 PrmA: Ribosomal prote 99.4 6.5E-12 1.4E-16 130.4 15.1 158 571-774 127-285 (295)
142 PRK13256 thiopurine S-methyltr 99.4 2.1E-11 4.6E-16 121.2 17.6 116 608-724 36-166 (226)
143 PRK11805 N5-glutamine S-adenos 99.4 1.1E-11 2.3E-16 131.4 15.7 105 616-720 134-262 (307)
144 PF01135 PCMT: Protein-L-isoas 99.4 4E-12 8.7E-17 125.8 11.6 112 601-721 58-172 (209)
145 KOG1541 Predicted protein carb 99.4 4.1E-12 8.8E-17 120.0 10.7 122 595-723 28-162 (270)
146 PF05724 TPMT: Thiopurine S-me 99.4 7.7E-12 1.7E-16 125.0 13.5 151 605-772 27-190 (218)
147 TIGR00536 hemK_fam HemK family 99.4 1.4E-11 3E-16 130.0 15.8 107 615-721 114-244 (284)
148 PTZ00146 fibrillarin; Provisio 99.3 3.1E-11 6.6E-16 123.6 16.5 139 609-775 126-274 (293)
149 PRK11088 rrmA 23S rRNA methylt 99.3 5.8E-12 1.3E-16 132.3 11.6 94 614-722 84-182 (272)
150 TIGR03438 probable methyltrans 99.3 3.1E-11 6.7E-16 128.3 15.6 115 605-721 55-177 (301)
151 PRK11188 rrmJ 23S rRNA methylt 99.3 1.7E-11 3.8E-16 122.6 12.5 109 603-723 38-167 (209)
152 PF03486 HI0933_like: HI0933-l 99.3 6.1E-12 1.3E-16 138.0 9.5 60 209-268 106-166 (409)
153 PRK10157 putative oxidoreducta 99.3 1.9E-11 4.2E-16 137.1 13.6 56 213-268 109-164 (428)
154 PRK13943 protein-L-isoaspartat 99.3 2.7E-11 5.9E-16 128.0 13.7 111 602-721 67-180 (322)
155 PLN02232 ubiquinone biosynthes 99.3 1.1E-11 2.3E-16 118.8 9.1 130 642-774 1-149 (160)
156 COG0579 Predicted dehydrogenas 99.3 5.2E-11 1.1E-15 129.0 14.7 63 212-274 153-219 (429)
157 PHA03411 putative methyltransf 99.3 1.2E-10 2.5E-15 117.8 16.1 145 613-785 62-225 (279)
158 PRK14966 unknown domain/N5-glu 99.3 6.5E-11 1.4E-15 127.0 15.1 112 604-719 242-379 (423)
159 TIGR03534 RF_mod_PrmC protein- 99.3 6.9E-11 1.5E-15 123.3 15.1 117 602-720 75-216 (251)
160 KOG2361 Predicted methyltransf 99.3 1.3E-11 2.8E-16 119.0 8.5 151 618-772 74-237 (264)
161 PRK10901 16S rRNA methyltransf 99.3 1E-10 2.3E-15 130.5 17.2 119 605-725 234-376 (427)
162 PRK09328 N5-glutamine S-adenos 99.2 1.2E-10 2.6E-15 123.3 15.4 115 604-719 97-236 (275)
163 PRK11728 hydroxyglutarate oxid 99.2 6.2E-11 1.3E-15 132.2 13.8 56 212-268 149-204 (393)
164 smart00650 rADc Ribosomal RNA 99.2 6.6E-11 1.4E-15 114.8 11.9 111 605-722 3-114 (169)
165 PLN02781 Probable caffeoyl-CoA 99.2 8.4E-11 1.8E-15 119.7 12.9 106 613-723 66-180 (234)
166 PRK14904 16S rRNA methyltransf 99.2 9.6E-11 2.1E-15 131.5 14.3 119 606-725 241-381 (445)
167 PRK14903 16S rRNA methyltransf 99.2 1.8E-10 3.9E-15 128.0 16.3 120 606-726 228-371 (431)
168 COG2519 GCD14 tRNA(1-methylade 99.2 1.4E-10 3E-15 114.1 13.4 112 605-723 84-197 (256)
169 COG1635 THI4 Ribulose 1,5-bisp 99.2 1.6E-10 3.4E-15 110.0 13.0 66 1-76 31-97 (262)
170 PRK01544 bifunctional N5-gluta 99.2 1.4E-10 3E-15 131.3 15.1 106 615-720 138-268 (506)
171 COG0644 FixC Dehydrogenases (f 99.2 3E-10 6.5E-15 126.5 17.6 56 213-268 96-152 (396)
172 PRK14901 16S rRNA methyltransf 99.2 2.1E-10 4.5E-15 128.4 15.9 120 605-725 242-388 (434)
173 TIGR00563 rsmB ribosomal RNA s 99.2 1.2E-10 2.6E-15 130.2 13.8 122 605-726 228-373 (426)
174 PRK04457 spermidine synthase; 99.2 9.1E-11 2E-15 121.6 11.7 109 614-723 65-179 (262)
175 PF06080 DUF938: Protein of un 99.2 1.9E-10 4.1E-15 110.9 12.5 157 616-774 26-194 (204)
176 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.8E-10 4E-15 119.9 13.6 117 608-725 64-203 (264)
177 PRK14902 16S rRNA methyltransf 99.2 1.9E-10 4E-15 129.5 14.1 119 605-724 240-382 (444)
178 TIGR03364 HpnW_proposed FAD de 99.2 2.3E-10 4.9E-15 126.6 13.6 53 212-269 145-198 (365)
179 PF00891 Methyltransf_2: O-met 99.1 4.9E-10 1.1E-14 115.8 14.1 114 605-728 90-206 (241)
180 TIGR03704 PrmC_rel_meth putati 99.1 5.8E-10 1.3E-14 114.9 14.2 113 604-720 74-215 (251)
181 PTZ00383 malate:quinone oxidor 99.1 6E-10 1.3E-14 125.5 15.2 57 212-269 211-274 (497)
182 TIGR02032 GG-red-SF geranylger 99.1 8.1E-10 1.8E-14 118.3 15.6 56 213-268 92-148 (295)
183 cd02440 AdoMet_MTases S-adenos 99.1 4.1E-10 8.9E-15 99.4 11.1 101 618-720 1-103 (107)
184 KOG3010 Methyltransferase [Gen 99.1 2.2E-10 4.7E-15 110.7 9.8 102 614-719 31-135 (261)
185 PF08704 GCD14: tRNA methyltra 99.1 7.8E-10 1.7E-14 111.7 14.3 111 604-721 29-146 (247)
186 PF01596 Methyltransf_3: O-met 99.1 4.5E-10 9.8E-15 110.9 12.1 123 595-725 28-159 (205)
187 COG0654 UbiH 2-polyprenyl-6-me 99.1 1.9E-09 4.1E-14 119.8 18.6 58 213-270 105-164 (387)
188 PRK10015 oxidoreductase; Provi 99.1 1.1E-09 2.3E-14 122.9 16.4 56 213-268 109-164 (429)
189 COG4122 Predicted O-methyltran 99.1 6.4E-10 1.4E-14 109.3 12.4 110 612-726 56-171 (219)
190 PF05891 Methyltransf_PK: AdoM 99.1 4.9E-10 1.1E-14 108.4 11.3 146 615-772 55-201 (218)
191 TIGR00438 rrmJ cell division p 99.1 5.8E-10 1.3E-14 110.4 12.1 104 606-721 22-146 (188)
192 PRK00811 spermidine synthase; 99.1 3.8E-10 8.3E-15 118.4 11.3 108 614-721 75-191 (283)
193 COG2890 HemK Methylase of poly 99.1 9.9E-10 2.1E-14 114.5 14.2 101 618-720 113-237 (280)
194 PRK15128 23S rRNA m(5)C1962 me 99.1 8.5E-10 1.8E-14 120.5 13.8 110 614-723 219-341 (396)
195 PLN02476 O-methyltransferase 99.1 9.7E-10 2.1E-14 112.7 13.0 117 601-725 107-232 (278)
196 TIGR01320 mal_quin_oxido malat 99.1 3.1E-09 6.6E-14 120.4 17.4 57 212-268 178-240 (483)
197 PRK06847 hypothetical protein; 99.1 2E-09 4.4E-14 119.6 15.2 56 213-268 108-163 (375)
198 PF02390 Methyltransf_4: Putat 99.1 1.1E-09 2.4E-14 107.8 11.5 103 618-721 20-133 (195)
199 KOG2844 Dimethylglycine dehydr 99.0 1E-08 2.3E-13 112.2 19.4 65 203-268 175-243 (856)
200 PRK04176 ribulose-1,5-biphosph 99.0 2.4E-09 5.1E-14 110.8 14.1 37 2-38 27-63 (257)
201 TIGR00292 thiazole biosynthesi 99.0 3.2E-09 6.9E-14 109.4 14.8 37 2-38 23-59 (254)
202 PRK13168 rumA 23S rRNA m(5)U19 99.0 1E-09 2.2E-14 123.3 12.2 133 578-721 263-400 (443)
203 PRK08773 2-octaprenyl-3-methyl 99.0 3.8E-09 8.3E-14 117.9 16.6 56 213-268 114-169 (392)
204 PHA03412 putative methyltransf 99.0 1.3E-09 2.7E-14 107.7 10.6 96 615-716 49-158 (241)
205 PRK05257 malate:quinone oxidor 99.0 7.5E-09 1.6E-13 117.3 18.4 57 212-268 183-246 (494)
206 TIGR00275 flavoprotein, HI0933 99.0 5.4E-09 1.2E-13 116.2 16.9 59 210-269 103-161 (400)
207 PLN02172 flavin-containing mon 99.0 1.8E-09 3.9E-14 121.4 13.2 38 1-38 11-48 (461)
208 PRK11101 glpA sn-glycerol-3-ph 99.0 4.4E-09 9.4E-14 121.6 16.6 57 212-268 149-211 (546)
209 TIGR01988 Ubi-OHases Ubiquinon 99.0 3.9E-09 8.4E-14 117.8 15.8 56 213-268 107-163 (385)
210 KOG2904 Predicted methyltransf 99.0 5.6E-09 1.2E-13 102.4 14.1 112 614-725 147-289 (328)
211 PRK07588 hypothetical protein; 99.0 3.7E-09 8E-14 118.0 14.7 56 213-269 104-159 (391)
212 PF13738 Pyr_redox_3: Pyridine 99.0 1.1E-09 2.3E-14 110.3 9.3 53 215-267 85-137 (203)
213 PLN02366 spermidine synthase 99.0 1E-09 2.2E-14 115.5 9.4 108 614-721 90-206 (308)
214 PRK11783 rlmL 23S rRNA m(2)G24 99.0 2.6E-09 5.6E-14 126.3 13.9 106 615-721 538-656 (702)
215 TIGR03197 MnmC_Cterm tRNA U-34 99.0 2.9E-09 6.3E-14 118.3 13.4 65 204-269 124-191 (381)
216 PRK08163 salicylate hydroxylas 99.0 5.9E-09 1.3E-13 116.7 15.9 58 213-270 110-168 (396)
217 TIGR00417 speE spermidine synt 99.0 3.5E-09 7.5E-14 110.9 13.0 107 614-720 71-185 (270)
218 PRK03522 rumB 23S rRNA methylu 99.0 2.9E-09 6.4E-14 114.1 12.7 111 603-720 161-273 (315)
219 PRK05714 2-octaprenyl-3-methyl 99.0 3.7E-09 8E-14 118.6 14.0 62 213-274 113-175 (405)
220 PRK06753 hypothetical protein; 99.0 5.4E-09 1.2E-13 116.0 15.2 55 213-269 99-153 (373)
221 PF00996 GDI: GDP dissociation 99.0 3.9E-08 8.5E-13 107.7 21.4 248 2-263 6-284 (438)
222 KOG1269 SAM-dependent methyltr 99.0 1.3E-09 2.7E-14 116.4 9.5 164 558-726 56-220 (364)
223 TIGR01984 UbiH 2-polyprenyl-6- 99.0 7.2E-09 1.6E-13 115.4 15.9 61 213-273 106-168 (382)
224 PRK13369 glycerol-3-phosphate 99.0 5.4E-09 1.2E-13 120.0 15.1 57 212-268 155-215 (502)
225 PF03291 Pox_MCEL: mRNA cappin 99.0 3.3E-09 7.1E-14 112.7 12.2 109 615-723 62-188 (331)
226 PF05185 PRMT5: PRMT5 arginine 99.0 4.9E-09 1.1E-13 116.0 14.0 103 616-718 187-294 (448)
227 TIGR02028 ChlP geranylgeranyl 99.0 1.2E-08 2.6E-13 113.6 17.1 36 1-36 1-36 (398)
228 PF01946 Thi4: Thi4 family; PD 99.0 3.8E-09 8.1E-14 101.8 11.2 39 2-40 19-57 (230)
229 PRK07236 hypothetical protein; 99.0 7.5E-09 1.6E-13 115.2 15.5 54 214-269 102-155 (386)
230 PRK12266 glpD glycerol-3-phosp 99.0 7.3E-09 1.6E-13 118.7 15.5 57 212-268 155-216 (508)
231 PRK10909 rsmD 16S rRNA m(2)G96 99.0 5.4E-09 1.2E-13 102.9 12.4 106 614-723 52-161 (199)
232 TIGR02023 BchP-ChlP geranylger 99.0 1.6E-08 3.5E-13 112.5 17.6 60 213-273 93-161 (388)
233 PLN02589 caffeoyl-CoA O-methyl 99.0 3.6E-09 7.8E-14 107.4 10.8 117 600-724 67-193 (247)
234 PRK13339 malate:quinone oxidor 98.9 2.2E-08 4.8E-13 112.5 17.9 57 212-268 184-247 (497)
235 PRK08274 tricarballylate dehyd 98.9 2E-08 4.4E-13 114.7 18.1 60 208-267 127-191 (466)
236 PRK11727 23S rRNA mA1618 methy 98.9 9.1E-09 2E-13 108.2 13.8 150 615-770 114-290 (321)
237 PRK05868 hypothetical protein; 98.9 5.5E-09 1.2E-13 115.3 12.6 57 213-270 106-162 (372)
238 PRK06834 hypothetical protein; 98.9 7.3E-09 1.6E-13 118.0 13.9 56 213-268 101-156 (488)
239 PRK03612 spermidine synthase; 98.9 4.2E-09 9.1E-14 120.2 11.7 108 614-721 296-415 (521)
240 PRK06184 hypothetical protein; 98.9 7.4E-09 1.6E-13 119.3 14.0 57 213-269 110-169 (502)
241 PRK07333 2-octaprenyl-6-methox 98.9 3E-09 6.5E-14 119.4 10.3 56 213-268 112-167 (403)
242 PLN00093 geranylgeranyl diphos 98.9 1.9E-08 4.2E-13 113.0 16.4 33 1-33 40-72 (450)
243 PRK07608 ubiquinone biosynthes 98.9 1.6E-08 3.4E-13 113.0 15.7 55 213-268 112-167 (388)
244 KOG1975 mRNA cap methyltransfe 98.9 4.2E-09 9.1E-14 105.7 9.2 217 557-786 70-331 (389)
245 TIGR03219 salicylate_mono sali 98.9 8.2E-09 1.8E-13 116.1 12.8 56 213-270 106-161 (414)
246 PRK01581 speE spermidine synth 98.9 6.3E-09 1.4E-13 109.5 10.4 108 614-721 149-268 (374)
247 PF06100 Strep_67kDa_ant: Stre 98.9 1.2E-07 2.6E-12 102.8 20.4 232 1-267 3-273 (500)
248 PRK08013 oxidoreductase; Provi 98.9 1.8E-08 3.9E-13 112.7 14.8 58 213-270 112-170 (400)
249 COG0220 Predicted S-adenosylme 98.9 6E-09 1.3E-13 104.0 9.6 103 617-720 50-163 (227)
250 PLN02672 methionine S-methyltr 98.9 1.4E-08 3E-13 121.8 14.2 106 616-721 119-278 (1082)
251 PRK07045 putative monooxygenas 98.9 1.7E-08 3.7E-13 112.6 14.2 58 213-270 107-167 (388)
252 PTZ00338 dimethyladenosine tra 98.9 8.5E-09 1.8E-13 108.1 10.8 92 601-694 22-113 (294)
253 PF01170 UPF0020: Putative RNA 98.9 2.3E-08 4.9E-13 97.4 13.1 115 604-718 17-148 (179)
254 PRK07190 hypothetical protein; 98.9 3.3E-08 7.1E-13 112.5 16.4 57 214-270 111-167 (487)
255 PRK07364 2-octaprenyl-6-methox 98.9 1.3E-08 2.9E-13 114.6 13.1 57 213-269 122-182 (415)
256 PRK08849 2-octaprenyl-3-methyl 98.9 2.8E-08 6E-13 110.5 15.3 57 214-270 112-169 (384)
257 KOG1499 Protein arginine N-met 98.9 9.5E-09 2.1E-13 105.9 10.3 106 612-718 57-164 (346)
258 PRK08020 ubiF 2-octaprenyl-3-m 98.9 3E-08 6.5E-13 110.8 15.1 57 213-269 113-170 (391)
259 PF10294 Methyltransf_16: Puta 98.9 3.2E-08 7E-13 95.9 13.3 109 612-723 42-158 (173)
260 TIGR02085 meth_trns_rumB 23S r 98.9 2.1E-08 4.5E-13 109.9 13.3 131 581-721 202-334 (374)
261 KOG1500 Protein arginine N-met 98.8 1.5E-08 3.2E-13 101.7 10.7 177 614-796 176-361 (517)
262 PRK09126 hypothetical protein; 98.8 1.5E-08 3.2E-13 113.3 12.2 55 214-268 112-167 (392)
263 PF05219 DREV: DREV methyltran 98.8 2.5E-08 5.3E-13 99.0 12.1 144 615-773 94-241 (265)
264 COG2263 Predicted RNA methylas 98.8 2.4E-08 5.1E-13 93.6 11.1 81 610-694 40-120 (198)
265 PF12147 Methyltransf_20: Puta 98.8 1.4E-07 3E-12 94.7 17.2 146 615-768 135-294 (311)
266 TIGR01813 flavo_cyto_c flavocy 98.8 5.5E-08 1.2E-12 110.3 16.3 57 212-268 130-192 (439)
267 PRK06475 salicylate hydroxylas 98.8 4.5E-08 9.7E-13 109.5 15.2 58 213-270 108-169 (400)
268 PRK07494 2-octaprenyl-6-methox 98.8 3.1E-08 6.6E-13 110.6 13.8 56 213-268 112-167 (388)
269 PF02475 Met_10: Met-10+ like- 98.8 1.5E-08 3.2E-13 99.3 9.7 100 613-718 99-199 (200)
270 TIGR00479 rumA 23S rRNA (uraci 98.8 2.4E-08 5.2E-13 112.3 12.8 112 601-719 278-394 (431)
271 PRK08850 2-octaprenyl-6-methox 98.8 4.8E-08 1E-12 109.5 15.1 55 214-268 113-168 (405)
272 KOG2852 Possible oxidoreductas 98.8 4.6E-08 9.9E-13 96.8 12.8 48 1-50 11-64 (380)
273 PRK14896 ksgA 16S ribosomal RN 98.8 2E-08 4.3E-13 104.4 11.1 88 601-693 15-102 (258)
274 PRK06183 mhpA 3-(3-hydroxyphen 98.8 5E-08 1.1E-12 113.3 15.4 60 214-273 115-180 (538)
275 PRK06617 2-octaprenyl-6-methox 98.8 6.8E-08 1.5E-12 107.0 15.8 57 213-270 105-162 (374)
276 PF05148 Methyltransf_8: Hypot 98.8 4E-08 8.8E-13 94.0 11.8 128 603-775 59-188 (219)
277 PRK09897 hypothetical protein; 98.8 4E-08 8.6E-13 111.5 13.9 54 213-266 108-164 (534)
278 PRK06481 fumarate reductase fl 98.8 6.4E-08 1.4E-12 111.1 15.7 57 212-268 190-251 (506)
279 PRK00274 ksgA 16S ribosomal RN 98.8 1.8E-08 4E-13 105.4 10.2 87 602-693 29-116 (272)
280 PLN02463 lycopene beta cyclase 98.8 5.2E-08 1.1E-12 108.9 14.2 55 213-268 115-169 (447)
281 COG0578 GlpA Glycerol-3-phosph 98.8 4.7E-08 1E-12 108.4 13.5 57 213-269 165-226 (532)
282 PF00890 FAD_binding_2: FAD bi 98.8 1.4E-08 3.1E-13 114.4 9.4 60 210-269 139-204 (417)
283 PRK08244 hypothetical protein; 98.8 2.2E-08 4.8E-13 115.2 11.2 56 213-268 101-159 (493)
284 PRK08243 4-hydroxybenzoate 3-m 98.8 3E-08 6.4E-13 110.7 11.8 57 213-269 104-164 (392)
285 PRK07538 hypothetical protein; 98.8 3.8E-08 8.1E-13 110.7 12.7 59 1-75 1-59 (413)
286 PF13454 NAD_binding_9: FAD-NA 98.8 6.6E-08 1.4E-12 92.3 12.5 53 213-266 102-155 (156)
287 KOG2899 Predicted methyltransf 98.8 3.3E-08 7.1E-13 95.4 10.1 105 614-719 57-207 (288)
288 COG1041 Predicted DNA modifica 98.8 4.5E-08 9.8E-13 101.6 11.9 115 605-721 187-310 (347)
289 KOG3045 Predicted RNA methylas 98.8 2.9E-08 6.3E-13 96.5 9.7 124 604-774 168-293 (325)
290 COG2521 Predicted archaeal met 98.8 1.4E-08 3.1E-13 97.2 7.3 142 609-770 128-275 (287)
291 KOG2853 Possible oxidoreductas 98.8 1.8E-07 3.8E-12 94.7 15.4 45 372-417 439-483 (509)
292 PRK06126 hypothetical protein; 98.8 3.3E-08 7.2E-13 115.2 12.0 56 214-269 128-189 (545)
293 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 1E-07 2.2E-12 106.1 14.9 58 213-270 104-165 (390)
294 PLN02464 glycerol-3-phosphate 98.8 2.3E-07 5E-12 108.6 18.4 57 212-268 232-296 (627)
295 PRK05732 2-octaprenyl-6-methox 98.8 2.3E-08 5E-13 112.0 9.8 55 214-268 114-169 (395)
296 PF01739 CheR: CheR methyltran 98.8 8.4E-08 1.8E-12 94.0 12.3 125 595-719 11-173 (196)
297 PF01494 FAD_binding_3: FAD bi 98.8 1.5E-08 3.3E-13 111.5 8.1 57 213-269 112-173 (356)
298 PLN02661 Putative thiazole syn 98.7 1.6E-07 3.4E-12 99.3 15.0 36 2-37 94-130 (357)
299 PRK08132 FAD-dependent oxidore 98.7 9.2E-08 2E-12 111.5 14.6 60 1-76 24-83 (547)
300 COG1092 Predicted SAM-dependen 98.7 6.3E-08 1.4E-12 104.1 12.0 107 616-723 218-338 (393)
301 PRK06116 glutathione reductase 98.7 3E-08 6.5E-13 112.7 10.1 55 212-266 208-263 (450)
302 TIGR01424 gluta_reduc_2 glutat 98.7 1.2E-07 2.6E-12 107.5 14.8 55 212-266 207-261 (446)
303 TIGR01790 carotene-cycl lycope 98.7 1E-07 2.2E-12 106.5 14.0 55 213-268 86-141 (388)
304 PRK05249 soluble pyridine nucl 98.7 1.9E-07 4.2E-12 106.5 16.6 55 212-266 216-270 (461)
305 TIGR00095 RNA methyltransferas 98.7 6.3E-08 1.4E-12 95.1 10.7 104 615-722 49-160 (189)
306 TIGR01812 sdhA_frdA_Gneg succi 98.7 2.2E-07 4.7E-12 108.7 16.5 56 213-268 130-191 (566)
307 KOG1399 Flavin-containing mono 98.7 8E-08 1.7E-12 106.0 12.0 38 1-38 7-44 (448)
308 TIGR01350 lipoamide_DH dihydro 98.7 9.9E-08 2.1E-12 109.0 13.2 56 212-267 211-268 (461)
309 PF00743 FMO-like: Flavin-bind 98.7 8.3E-09 1.8E-13 117.6 4.2 38 1-38 2-39 (531)
310 TIGR02352 thiamin_ThiO glycine 98.7 2.9E-07 6.3E-12 100.6 15.9 187 212-416 137-336 (337)
311 PRK05192 tRNA uridine 5-carbox 98.7 1.1E-07 2.4E-12 107.7 12.6 55 213-268 101-157 (618)
312 PRK06185 hypothetical protein; 98.7 1.4E-07 3E-12 106.0 13.4 61 213-273 109-175 (407)
313 KOG2940 Predicted methyltransf 98.7 4.4E-08 9.5E-13 93.3 7.6 116 601-723 60-176 (325)
314 TIGR01292 TRX_reduct thioredox 98.7 1.2E-07 2.6E-12 101.8 12.0 49 218-267 63-111 (300)
315 TIGR00755 ksgA dimethyladenosi 98.7 2E-07 4.3E-12 96.8 13.0 87 601-692 15-104 (253)
316 KOG2415 Electron transfer flav 98.7 1.9E-07 4.2E-12 96.8 12.4 62 212-273 183-263 (621)
317 PRK07121 hypothetical protein; 98.7 3.3E-07 7.1E-12 105.3 15.6 58 211-268 176-239 (492)
318 PRK04148 hypothetical protein; 98.7 3.1E-07 6.8E-12 82.8 12.0 103 605-723 6-111 (134)
319 PRK08401 L-aspartate oxidase; 98.7 2.7E-07 5.8E-12 104.9 14.6 56 212-269 120-176 (466)
320 PRK07573 sdhA succinate dehydr 98.7 3.1E-07 6.8E-12 107.8 15.5 54 215-268 173-232 (640)
321 PRK06416 dihydrolipoamide dehy 98.7 1.5E-07 3.4E-12 107.3 12.7 55 212-266 213-270 (462)
322 PRK12842 putative succinate de 98.7 1.1E-06 2.4E-11 102.5 20.0 57 212-268 214-275 (574)
323 PRK11445 putative oxidoreducta 98.6 1.7E-07 3.7E-12 102.7 12.1 46 224-269 110-158 (351)
324 PLN02927 antheraxanthin epoxid 98.6 2.3E-07 5.1E-12 107.1 13.3 56 213-270 195-250 (668)
325 TIGR01989 COQ6 Ubiquinone bios 98.6 1.4E-07 3E-12 106.7 11.3 58 213-270 118-185 (437)
326 COG3963 Phospholipid N-methylt 98.6 3.3E-07 7.1E-12 83.5 11.3 142 567-723 9-158 (194)
327 TIGR01421 gluta_reduc_1 glutat 98.6 3.1E-07 6.7E-12 104.0 14.1 55 212-266 207-263 (450)
328 PRK12845 3-ketosteroid-delta-1 98.6 1.2E-06 2.6E-11 101.3 19.1 61 207-268 213-278 (564)
329 PLN02697 lycopene epsilon cycl 98.6 3.4E-07 7.4E-12 104.0 14.0 55 213-268 193-248 (529)
330 PRK01544 bifunctional N5-gluta 98.6 1.8E-07 3.9E-12 106.2 11.7 105 615-720 347-461 (506)
331 KOG3191 Predicted N6-DNA-methy 98.6 2.2E-06 4.8E-11 79.4 16.4 108 614-723 42-170 (209)
332 PRK05945 sdhA succinate dehydr 98.6 3.5E-07 7.5E-12 106.7 14.3 57 212-268 135-197 (575)
333 TIGR02485 CobZ_N-term precorri 98.6 3.4E-07 7.3E-12 103.5 13.8 61 207-267 118-182 (432)
334 TIGR03378 glycerol3P_GlpB glyc 98.6 3.3E-07 7.2E-12 99.8 12.9 63 212-274 263-328 (419)
335 PRK07803 sdhA succinate dehydr 98.6 6.2E-07 1.3E-11 105.3 16.2 36 2-37 10-45 (626)
336 PLN02507 glutathione reductase 98.6 1.4E-06 3E-11 99.7 18.7 55 212-266 244-298 (499)
337 PF10672 Methyltrans_SAM: S-ad 98.6 2.5E-07 5.5E-12 95.6 11.4 107 614-723 122-240 (286)
338 KOG1661 Protein-L-isoaspartate 98.6 2.6E-07 5.6E-12 87.6 10.3 110 604-721 69-193 (237)
339 PRK10611 chemotaxis methyltran 98.6 1.3E-07 2.9E-12 98.0 9.3 104 616-719 116-260 (287)
340 COG2072 TrkA Predicted flavopr 98.6 2.2E-07 4.7E-12 104.2 11.7 37 1-37 9-46 (443)
341 TIGR03140 AhpF alkyl hydropero 98.6 2.7E-07 5.7E-12 106.3 12.7 54 214-267 269-322 (515)
342 PF01134 GIDA: Glucose inhibit 98.6 2.8E-07 6.1E-12 99.1 11.6 54 213-267 96-151 (392)
343 PRK08010 pyridine nucleotide-d 98.6 3.9E-07 8.4E-12 103.3 13.4 54 212-266 199-252 (441)
344 PRK07804 L-aspartate oxidase; 98.6 1E-06 2.2E-11 102.0 16.7 57 212-268 144-210 (541)
345 COG1249 Lpd Pyruvate/2-oxoglut 98.6 2.7E-07 5.8E-12 102.3 11.3 81 186-266 182-270 (454)
346 PRK06996 hypothetical protein; 98.6 7.3E-07 1.6E-11 99.6 14.9 61 213-273 116-181 (398)
347 PRK06452 sdhA succinate dehydr 98.6 8.6E-07 1.9E-11 103.0 15.7 57 212-268 136-198 (566)
348 PF05834 Lycopene_cycl: Lycope 98.6 4.2E-07 9E-12 100.4 12.4 54 213-267 88-141 (374)
349 PRK11933 yebU rRNA (cytosine-C 98.6 6.8E-07 1.5E-11 99.5 13.6 114 612-726 110-247 (470)
350 PRK12843 putative FAD-binding 98.6 3.5E-06 7.7E-11 98.3 20.3 57 212-268 221-282 (578)
351 COG0030 KsgA Dimethyladenosine 98.6 3.4E-07 7.3E-12 92.4 10.2 87 602-692 17-105 (259)
352 PRK05329 anaerobic glycerol-3- 98.5 4.6E-07 9.9E-12 100.1 12.1 56 213-268 260-318 (422)
353 PLN02823 spermine synthase 98.5 6.6E-07 1.4E-11 95.4 12.9 107 615-722 103-221 (336)
354 PRK06134 putative FAD-binding 98.5 1.7E-06 3.8E-11 100.9 17.5 57 212-268 217-278 (581)
355 PRK06175 L-aspartate oxidase; 98.5 1.1E-06 2.3E-11 98.9 14.9 56 212-267 128-188 (433)
356 PRK15317 alkyl hydroperoxide r 98.5 5.1E-07 1.1E-11 104.2 12.6 54 214-267 268-321 (517)
357 PRK04338 N(2),N(2)-dimethylgua 98.5 4.6E-07 9.9E-12 98.7 11.4 99 615-720 57-157 (382)
358 PRK06115 dihydrolipoamide dehy 98.5 3.9E-07 8.4E-12 103.8 11.1 55 212-266 215-274 (466)
359 PRK06263 sdhA succinate dehydr 98.5 1.5E-06 3.3E-11 100.8 16.0 57 212-268 134-197 (543)
360 PF02527 GidB: rRNA small subu 98.5 1.2E-06 2.7E-11 84.8 12.7 95 618-719 51-146 (184)
361 PRK07818 dihydrolipoamide dehy 98.5 1.7E-06 3.6E-11 98.8 16.0 55 212-266 213-271 (466)
362 PRK08626 fumarate reductase fl 98.5 1.4E-06 2.9E-11 102.6 15.5 57 212-268 158-220 (657)
363 KOG3178 Hydroxyindole-O-methyl 98.5 1.4E-06 3.1E-11 90.2 13.7 155 615-778 177-336 (342)
364 PF03602 Cons_hypoth95: Conser 98.5 5.1E-07 1.1E-11 87.9 9.8 108 614-723 41-155 (183)
365 TIGR00551 nadB L-aspartate oxi 98.5 2E-06 4.3E-11 98.5 16.2 57 212-268 128-189 (488)
366 PRK06069 sdhA succinate dehydr 98.5 1.5E-06 3.2E-11 101.6 15.5 57 212-268 137-200 (577)
367 PTZ00139 Succinate dehydrogena 98.5 1.8E-06 3.8E-11 101.2 16.0 57 212-268 166-229 (617)
368 KOG0820 Ribosomal RNA adenine 98.5 4.9E-07 1.1E-11 89.1 9.4 86 604-691 47-132 (315)
369 PRK08958 sdhA succinate dehydr 98.5 1.5E-06 3.2E-11 101.4 15.1 57 212-268 143-206 (588)
370 TIGR02053 MerA mercuric reduct 98.5 1.1E-06 2.5E-11 100.2 14.0 55 212-266 207-264 (463)
371 PRK05976 dihydrolipoamide dehy 98.5 1.1E-06 2.4E-11 100.5 13.7 36 2-38 6-41 (472)
372 TIGR00478 tly hemolysin TlyA f 98.5 1E-06 2.2E-11 88.4 11.6 102 601-719 60-169 (228)
373 PRK07251 pyridine nucleotide-d 98.5 1.2E-06 2.7E-11 99.1 13.8 54 212-266 198-251 (438)
374 PF12831 FAD_oxidored: FAD dep 98.5 4.2E-08 9E-13 110.2 1.9 38 2-39 1-38 (428)
375 PRK14694 putative mercuric red 98.5 2.2E-06 4.7E-11 97.9 15.9 54 212-266 218-271 (468)
376 PRK09078 sdhA succinate dehydr 98.5 1.9E-06 4.2E-11 100.6 15.5 57 212-268 149-212 (598)
377 PRK06370 mercuric reductase; V 98.5 1.2E-06 2.7E-11 99.8 13.7 55 212-266 212-269 (463)
378 PRK12835 3-ketosteroid-delta-1 98.5 1.3E-06 2.9E-11 101.6 14.0 37 2-38 13-49 (584)
379 TIGR01811 sdhA_Bsu succinate d 98.5 1.7E-06 3.7E-11 101.0 15.0 35 3-37 1-35 (603)
380 PRK06327 dihydrolipoamide dehy 98.5 7.8E-07 1.7E-11 101.6 11.8 55 212-266 224-282 (475)
381 PRK12844 3-ketosteroid-delta-1 98.5 1.5E-06 3.3E-11 100.7 14.3 57 212-268 208-269 (557)
382 KOG3420 Predicted RNA methylas 98.5 2.6E-07 5.7E-12 81.7 5.9 86 606-693 39-125 (185)
383 PTZ00058 glutathione reductase 98.5 1.4E-06 3.1E-11 100.1 13.7 55 212-266 278-334 (561)
384 PLN00128 Succinate dehydrogena 98.5 2.2E-06 4.7E-11 100.4 15.4 57 212-268 187-250 (635)
385 PRK06467 dihydrolipoamide dehy 98.5 1.1E-06 2.3E-11 100.3 12.5 37 2-38 6-42 (471)
386 PRK07057 sdhA succinate dehydr 98.5 3.1E-06 6.8E-11 98.8 16.5 57 212-268 148-211 (591)
387 COG2520 Predicted methyltransf 98.4 7.7E-07 1.7E-11 93.6 10.0 107 614-727 187-295 (341)
388 KOG2614 Kynurenine 3-monooxyge 98.4 9.8E-07 2.1E-11 93.0 10.7 34 2-35 4-37 (420)
389 PRK00050 16S rRNA m(4)C1402 me 98.4 4.5E-07 9.8E-12 94.3 8.1 84 604-690 8-98 (296)
390 PRK07512 L-aspartate oxidase; 98.4 3.4E-06 7.3E-11 96.9 16.1 57 212-268 136-197 (513)
391 PLN02985 squalene monooxygenas 98.4 2.7E-06 5.8E-11 97.4 15.2 60 1-76 44-103 (514)
392 PRK12839 hypothetical protein; 98.4 4.4E-06 9.6E-11 96.9 17.1 38 2-39 10-47 (572)
393 PF04820 Trp_halogenase: Trypt 98.4 9.1E-07 2E-11 99.7 11.0 55 213-268 155-211 (454)
394 COG1352 CheR Methylase of chem 98.4 7.7E-06 1.7E-10 83.8 16.6 146 572-719 55-239 (268)
395 PRK12834 putative FAD-binding 98.4 5.1E-06 1.1E-10 96.6 17.4 37 2-38 6-44 (549)
396 PRK05031 tRNA (uracil-5-)-meth 98.4 1.7E-06 3.7E-11 94.4 12.6 111 601-721 193-320 (362)
397 TIGR02143 trmA_only tRNA (urac 98.4 1.6E-06 3.6E-11 94.0 12.2 110 602-721 185-311 (353)
398 COG0421 SpeE Spermidine syntha 98.4 1.8E-06 3.9E-11 89.3 11.8 118 601-720 63-189 (282)
399 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.4 1.9E-06 4.2E-11 87.4 11.7 147 614-771 55-238 (256)
400 PRK07395 L-aspartate oxidase; 98.4 3.8E-06 8.2E-11 97.1 15.6 56 212-267 134-196 (553)
401 PRK13748 putative mercuric red 98.4 4.9E-06 1.1E-10 97.5 16.8 55 211-266 309-363 (561)
402 PF06039 Mqo: Malate:quinone o 98.4 2.5E-06 5.4E-11 91.7 12.8 61 212-272 181-248 (488)
403 PF07942 N2227: N2227-like pro 98.4 1.1E-05 2.3E-10 82.5 16.6 142 615-772 56-242 (270)
404 COG3075 GlpB Anaerobic glycero 98.4 2.1E-05 4.6E-10 79.9 18.4 61 213-273 259-322 (421)
405 COG0492 TrxB Thioredoxin reduc 98.4 1.7E-06 3.6E-11 91.4 11.2 53 214-268 63-115 (305)
406 PRK08205 sdhA succinate dehydr 98.4 3.5E-06 7.6E-11 98.4 15.0 57 212-268 140-206 (583)
407 PTZ00367 squalene epoxidase; P 98.4 2.2E-06 4.8E-11 98.6 13.0 60 2-76 35-94 (567)
408 PRK09231 fumarate reductase fl 98.4 5.4E-06 1.2E-10 96.6 16.4 57 212-268 133-196 (582)
409 KOG1663 O-methyltransferase [S 98.4 3.8E-06 8.3E-11 81.5 12.4 116 603-726 64-188 (237)
410 PRK06854 adenylylsulfate reduc 98.4 3.1E-06 6.6E-11 99.1 14.1 56 213-268 133-195 (608)
411 PF09445 Methyltransf_15: RNA 98.4 4.8E-07 1E-11 85.0 6.0 73 618-691 2-78 (163)
412 PRK07843 3-ketosteroid-delta-1 98.4 8.5E-06 1.8E-10 94.6 17.5 57 212-268 208-269 (557)
413 PF00732 GMC_oxred_N: GMC oxid 98.4 6.2E-06 1.3E-10 88.3 15.2 60 215-274 196-264 (296)
414 PRK12837 3-ketosteroid-delta-1 98.4 4.4E-06 9.5E-11 96.2 14.9 36 2-38 9-44 (513)
415 PRK14727 putative mercuric red 98.4 7.3E-06 1.6E-10 93.7 16.6 55 212-267 228-282 (479)
416 PRK08071 L-aspartate oxidase; 98.4 6.8E-06 1.5E-10 94.4 16.2 56 212-268 130-190 (510)
417 PRK08641 sdhA succinate dehydr 98.4 7.3E-06 1.6E-10 95.7 16.7 36 2-37 5-40 (589)
418 COG0116 Predicted N6-adenine-s 98.4 4.9E-06 1.1E-10 88.0 13.5 117 604-721 180-344 (381)
419 PTZ00052 thioredoxin reductase 98.4 1E-05 2.2E-10 92.8 17.3 55 212-266 222-276 (499)
420 KOG2404 Fumarate reductase, fl 98.4 4.7E-06 1E-10 84.0 12.5 37 2-38 11-47 (477)
421 PF03141 Methyltransf_29: Puta 98.4 3.2E-07 7E-12 99.1 4.6 115 601-723 99-221 (506)
422 PF02384 N6_Mtase: N-6 DNA Met 98.4 1.2E-06 2.7E-11 94.2 9.1 121 602-722 33-184 (311)
423 PLN02815 L-aspartate oxidase 98.3 4.3E-06 9.3E-11 97.0 14.0 35 2-37 31-65 (594)
424 TIGR03143 AhpF_homolog putativ 98.3 2.1E-06 4.5E-11 99.8 11.3 37 1-38 5-41 (555)
425 TIGR01423 trypano_reduc trypan 98.3 2.3E-06 5E-11 97.3 11.1 55 212-266 231-286 (486)
426 PRK08294 phenol 2-monooxygenas 98.3 3.5E-06 7.6E-11 99.0 12.9 59 1-77 33-94 (634)
427 COG0357 GidB Predicted S-adeno 98.3 4.2E-06 9.2E-11 82.3 11.2 97 616-719 68-166 (215)
428 PRK08275 putative oxidoreducta 98.3 3.6E-06 7.9E-11 97.8 12.5 57 212-268 137-200 (554)
429 TIGR01176 fum_red_Fp fumarate 98.3 9E-06 1.9E-10 94.6 15.3 57 212-268 132-195 (580)
430 PRK11783 rlmL 23S rRNA m(2)G24 98.3 6.6E-06 1.4E-10 97.6 14.4 117 605-721 179-347 (702)
431 KOG1439 RAB proteins geranylge 98.3 3.3E-06 7.2E-11 88.1 10.2 249 2-264 6-285 (440)
432 TIGR01372 soxA sarcosine oxida 98.3 8.8E-06 1.9E-10 100.7 15.9 40 1-40 164-203 (985)
433 PF01564 Spermine_synth: Sperm 98.3 3.9E-06 8.4E-11 86.1 10.7 109 614-722 75-192 (246)
434 PRK06912 acoL dihydrolipoamide 98.3 3.6E-06 7.8E-11 95.8 11.5 54 212-266 211-266 (458)
435 PF08123 DOT1: Histone methyla 98.3 3.8E-06 8.3E-11 83.0 9.9 115 602-719 29-156 (205)
436 PLN02546 glutathione reductase 98.3 2E-05 4.3E-10 90.8 17.3 55 212-266 293-348 (558)
437 PRK06292 dihydrolipoamide dehy 98.3 1.3E-05 2.9E-10 91.4 15.9 54 212-266 210-266 (460)
438 KOG2915 tRNA(1-methyladenosine 98.3 9.6E-06 2.1E-10 80.2 12.3 109 604-719 94-208 (314)
439 PRK07845 flavoprotein disulfid 98.3 7.9E-06 1.7E-10 93.1 13.8 37 1-38 2-38 (466)
440 TIGR00136 gidA glucose-inhibit 98.3 4.6E-06 1E-10 94.6 11.5 55 213-268 97-154 (617)
441 COG0742 N6-adenine-specific me 98.3 1.8E-05 3.9E-10 75.5 13.7 117 605-722 31-155 (187)
442 TIGR03439 methyl_EasF probable 98.3 1.3E-05 2.9E-10 84.6 14.2 143 567-719 36-195 (319)
443 PF00070 Pyr_redox: Pyridine n 98.3 1.1E-05 2.4E-10 67.2 11.0 35 2-36 1-35 (80)
444 COG2265 TrmA SAM-dependent met 98.2 6.6E-06 1.4E-10 90.7 11.9 117 598-721 276-396 (432)
445 PTZ00306 NADH-dependent fumara 98.2 8.1E-06 1.7E-10 102.5 13.6 37 2-38 411-447 (1167)
446 PF07156 Prenylcys_lyase: Pren 98.2 1.7E-05 3.7E-10 85.8 14.0 113 145-269 69-188 (368)
447 PF04816 DUF633: Family of unk 98.2 2.5E-05 5.4E-10 77.2 14.0 100 619-722 1-102 (205)
448 TIGR01438 TGR thioredoxin and 98.2 3.2E-05 7E-10 88.2 17.0 55 212-266 220-277 (484)
449 COG0144 Sun tRNA and rRNA cyto 98.2 3.7E-05 8.1E-10 83.3 16.4 120 606-726 147-293 (355)
450 PRK09077 L-aspartate oxidase; 98.2 3.6E-05 7.7E-10 89.2 17.1 35 2-37 10-44 (536)
451 TIGR02462 pyranose_ox pyranose 98.2 1.5E-05 3.2E-10 90.6 13.4 37 1-37 1-37 (544)
452 PRK12779 putative bifunctional 98.2 1.5E-06 3.3E-11 105.6 5.5 40 1-40 307-346 (944)
453 KOG1335 Dihydrolipoamide dehyd 98.2 8.4E-06 1.8E-10 84.3 9.6 71 2-76 41-112 (506)
454 COG1148 HdrA Heterodisulfide r 98.2 1.9E-06 4.2E-11 91.6 5.1 41 1-41 125-165 (622)
455 PF01728 FtsJ: FtsJ-like methy 98.1 5.4E-06 1.2E-10 81.5 7.7 110 602-723 7-141 (181)
456 TIGR03315 Se_ygfK putative sel 98.1 2.2E-06 4.8E-11 103.2 5.5 40 1-40 538-577 (1012)
457 PRK00536 speE spermidine synth 98.1 2.1E-05 4.5E-10 80.5 11.4 99 614-722 71-172 (262)
458 COG4716 Myosin-crossreactive a 98.1 2.6E-05 5.7E-10 80.3 12.0 229 1-264 23-288 (587)
459 COG1252 Ndh NADH dehydrogenase 98.1 2.1E-05 4.5E-10 85.3 11.8 52 212-267 209-261 (405)
460 TIGR02061 aprA adenosine phosp 98.1 4.8E-05 1E-09 88.4 15.0 56 213-268 127-191 (614)
461 KOG1331 Predicted methyltransf 98.1 4.2E-06 9.1E-11 83.9 4.8 111 603-725 35-147 (293)
462 PRK09853 putative selenate red 98.0 4.4E-06 9.6E-11 100.2 5.6 40 1-40 540-579 (1019)
463 PF05958 tRNA_U5-meth_tr: tRNA 98.0 2.1E-05 4.5E-10 85.5 10.2 76 599-677 181-256 (352)
464 PRK12831 putative oxidoreducta 98.0 4.7E-06 1E-10 94.5 5.5 40 1-40 141-180 (464)
465 KOG2665 Predicted FAD-dependen 98.0 2.7E-05 5.9E-10 78.5 9.7 56 212-267 196-256 (453)
466 PF04672 Methyltransf_19: S-ad 98.0 2.7E-05 6E-10 78.7 9.8 169 595-769 47-233 (267)
467 COG3573 Predicted oxidoreducta 98.0 8.2E-05 1.8E-09 75.6 12.9 38 2-39 7-46 (552)
468 PF00398 RrnaAD: Ribosomal RNA 98.0 4E-05 8.6E-10 79.9 11.2 104 601-713 16-123 (262)
469 COG5044 MRS6 RAB proteins gera 98.0 0.00017 3.7E-09 74.7 15.1 248 2-264 8-280 (434)
470 TIGR00308 TRM1 tRNA(guanine-26 98.0 4.4E-05 9.5E-10 82.8 11.5 99 616-721 45-147 (374)
471 PF09243 Rsm22: Mitochondrial 98.0 7.3E-05 1.6E-09 78.2 12.8 123 601-725 19-143 (274)
472 PRK09564 coenzyme A disulfide 98.0 2.1E-05 4.7E-10 89.4 9.6 44 224-267 68-114 (444)
473 PLN02852 ferredoxin-NADP+ redu 98.0 7.4E-06 1.6E-10 92.1 5.5 40 1-40 27-68 (491)
474 PRK13512 coenzyme A disulfide 98.0 0.00014 3.1E-09 82.2 15.9 52 212-267 189-240 (438)
475 COG4529 Uncharacterized protei 98.0 5.5E-05 1.2E-09 82.1 11.7 37 1-37 2-41 (474)
476 PF13679 Methyltransf_32: Meth 97.9 8.5E-05 1.8E-09 69.5 10.8 100 613-719 23-129 (141)
477 PRK09754 phenylpropionate diox 97.9 8.3E-05 1.8E-09 83.0 12.2 49 218-267 192-240 (396)
478 PRK10742 putative methyltransf 97.9 4.3E-05 9.3E-10 76.4 8.7 90 605-695 76-177 (250)
479 PRK12775 putative trifunctiona 97.9 1E-05 2.2E-10 99.5 5.2 40 1-40 431-470 (1006)
480 PRK12769 putative oxidoreducta 97.9 1.2E-05 2.6E-10 95.5 5.5 40 1-40 328-367 (654)
481 PF03059 NAS: Nicotianamine sy 97.9 0.00012 2.6E-09 75.1 11.7 103 617-720 122-229 (276)
482 PRK14989 nitrite reductase sub 97.9 4.4E-05 9.5E-10 92.2 9.9 55 213-267 188-244 (847)
483 PRK04965 NADH:flavorubredoxin 97.9 0.00012 2.7E-09 81.1 12.8 50 218-267 189-238 (377)
484 COG0493 GltD NADPH-dependent g 97.9 1.2E-05 2.7E-10 89.3 4.7 40 1-40 124-163 (457)
485 COG0500 SmtA SAM-dependent met 97.9 0.00019 4E-09 69.7 12.7 103 619-726 52-160 (257)
486 COG4076 Predicted RNA methylas 97.9 3.9E-05 8.6E-10 71.3 7.0 101 617-721 34-135 (252)
487 PF13578 Methyltransf_24: Meth 97.9 8.3E-06 1.8E-10 72.3 2.6 99 620-722 1-106 (106)
488 PRK06567 putative bifunctional 97.8 1.4E-05 3.1E-10 94.6 5.1 37 1-37 384-420 (1028)
489 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00015 3.2E-09 76.2 12.0 120 605-725 75-223 (283)
490 TIGR01316 gltA glutamate synth 97.8 1.7E-05 3.8E-10 89.7 5.3 39 1-39 134-172 (449)
491 PRK05335 tRNA (uracil-5-)-meth 97.8 1.9E-05 4.1E-10 86.0 5.1 36 1-36 3-38 (436)
492 PRK12778 putative bifunctional 97.8 1.8E-05 4E-10 95.5 5.6 40 1-40 432-471 (752)
493 PTZ00188 adrenodoxin reductase 97.8 2.1E-05 4.5E-10 87.0 5.4 41 1-41 40-81 (506)
494 PLN02668 indole-3-acetate carb 97.8 0.0074 1.6E-07 65.2 24.2 158 616-774 64-311 (386)
495 COG1053 SdhA Succinate dehydro 97.8 0.00017 3.8E-09 82.6 12.5 37 2-38 8-44 (562)
496 KOG2187 tRNA uracil-5-methyltr 97.8 2.2E-05 4.7E-10 85.0 4.8 106 567-677 338-443 (534)
497 PRK12814 putative NADPH-depend 97.8 2.4E-05 5.3E-10 92.5 5.4 39 1-39 194-232 (652)
498 PRK12810 gltD glutamate syntha 97.8 2.5E-05 5.5E-10 89.1 5.3 39 1-39 144-182 (471)
499 COG0029 NadB Aspartate oxidase 97.8 8E-05 1.7E-09 80.7 8.7 61 206-266 126-194 (518)
500 KOG0399 Glutamate synthase [Am 97.8 2.3E-05 5E-10 90.6 4.8 39 1-39 1786-1824(2142)
No 1
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.2e-67 Score=524.36 Aligned_cols=279 Identities=38% Similarity=0.733 Sum_probs=267.2
Q ss_pred hhhcccCchHHHHHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCcc
Q 038410 548 RHISRKNTLAQARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWG 627 (850)
Q Consensus 548 ~~~~~~~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G 627 (850)
.++.++++.+++.+||++|||++|+||++|||++|+|||+||++++.+|++||.+|++.++++++++||++|||||||||
T Consensus 5 ~~~~~~~~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG 84 (283)
T COG2230 5 RRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWG 84 (283)
T ss_pred ccccccccccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChh
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhhhChhhHHHHHHHH
Q 038410 628 TLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIENVGHEYIEEFFGCC 707 (850)
Q Consensus 628 ~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~~~~~ 707 (850)
.+++++|+++|++|+|+|+|++|.+.+++++++.|++++|+++..|++++. ++||.|+|++||||+|.++++.||+.+
T Consensus 85 ~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~ 162 (283)
T COG2230 85 GLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKV 162 (283)
T ss_pred HHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 559999999999999999999999999
Q ss_pred HhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhcCCceEEEEeeecCCcHHHHHHHHHHH
Q 038410 708 ESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRLCVEHLENIGIHFYQTLRCWRTN 787 (850)
Q Consensus 708 ~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~ 787 (850)
+++|+|||++++++|+.++..+. ...+||.+||||||.+|+..++.+...+ +||.+.+++.++.||++|++.|.++
T Consensus 163 ~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~~-~~~~v~~~~~~~~hYa~Tl~~W~~~ 238 (283)
T COG2230 163 YALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELASE-AGFVVLDVESLRPHYARTLRLWRER 238 (283)
T ss_pred HhhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHHh-cCcEEehHhhhcHHHHHHHHHHHHH
Confidence 99999999999999998886654 5788999999999999999999887665 7999999999999999999999999
Q ss_pred HHhcHHHHHhccCCHHHHHHHHHHHHHHHHHhccCcceEEEEEEEe
Q 038410 788 LMEKQSEILALGFNEKFIRTWEYYFDYCAAGFKSRTLGNYQIVFSR 833 (850)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~r~w~~yl~~~~~~f~~~~~~~~q~~~~~ 833 (850)
|+++++++.++ ++|+|.|||++||++|+.+|+.|.++++|++++|
T Consensus 239 f~~~~~~a~~~-~~e~~~r~w~~yl~~~~~~Fr~~~~~~~q~~~~k 283 (283)
T COG2230 239 FEANRDEAIAL-YDERFYRMWELYLAACAAAFRAGYIDVFQFTLTK 283 (283)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhccCCceEEEEEeeC
Confidence 99999999998 9999999999999999999999999999999986
No 2
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=100.00 E-value=7.2e-64 Score=542.73 Aligned_cols=341 Identities=30% Similarity=0.570 Sum_probs=301.1
Q ss_pred CceEEEEeChHHHHHHhccCCcchhHHhhcCCeeecCChHhHHHHHHHHHHccCCCCccchhhHHhHHHHHHH-Hhhhcc
Q 038410 474 LKSDLRIQNPQFYWKVMTQADLGLANSYINGDFSFIDKDEGLLNLFLIVIANQGLDSSTSKLNLRSIASAKYY-FRHISR 552 (850)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~e~y~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 552 (850)
++++|+|+|++++++++.+|+||||||||+|+|++++ |.++++.++.|..... . ...+...... ..++.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~lg~~eaY~~g~~~~~~----l~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~ 105 (383)
T PRK11705 35 RPWDIQVHNPRFFKRVLQEGSLGLGESYMDGWWDCDR----LDEFFSRVLRAGLDEK-L----PHHLKDTLRILRARLFN 105 (383)
T ss_pred CCeEEEECCHHHHHHHhccCCccHHHHHHcCCeecCC----HHHHHHHHHHccchhh-h----hhhHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999985 9999988887752111 0 0111111112 223467
Q ss_pred cCchHHHHHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHH
Q 038410 553 KNTLAQARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIE 632 (850)
Q Consensus 553 ~~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~ 632 (850)
+|+++++++||++|||++|+||++|+|++|+|||+||.. .++|++||.+|++.++++++++++++|||||||||.++..
T Consensus 106 ~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~ 184 (383)
T PRK11705 106 LQSKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARY 184 (383)
T ss_pred cCChhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHH
Confidence 899999999999999999999999999999999999975 4799999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhhhChhhHHHHHHHHHhccc
Q 038410 633 IVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIENVGHEYIEEFFGCCESLLA 712 (850)
Q Consensus 633 la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~Lk 712 (850)
++++++++|+|+|+|++|++.|+++++ ++ ++++...|+++++ ++||.|+|+++++|++.++++.+++++.++||
T Consensus 185 la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l~--~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk 258 (383)
T PRK11705 185 AAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDLN--GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLK 258 (383)
T ss_pred HHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhcC--CCCCEEEEeCchhhCChHHHHHHHHHHHHHcC
Confidence 998888999999999999999999884 44 5899999998874 78999999999999998889999999999999
Q ss_pred cCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhcCCceEEEEeeecCCcHHHHHHHHHHHHHhcH
Q 038410 713 EHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRLCVEHLENIGIHFYQTLRCWRTNLMEKQ 792 (850)
Q Consensus 713 pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~ 792 (850)
|||++++++++.+.. ......|+.+|+||++.+|++.++....+ .||++.++++++.||++|+..|+++|++++
T Consensus 259 pGG~lvl~~i~~~~~----~~~~~~~i~~yifp~g~lps~~~i~~~~~--~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~ 332 (383)
T PRK11705 259 PDGLFLLHTIGSNKT----DTNVDPWINKYIFPNGCLPSVRQIAQASE--GLFVMEDWHNFGADYDRTLMAWHENFEAAW 332 (383)
T ss_pred CCcEEEEEEccCCCC----CCCCCCCceeeecCCCcCCCHHHHHHHHH--CCcEEEEEecChhhHHHHHHHHHHHHHHHH
Confidence 999999998876542 12346799999999999999999877654 489999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhccCcceEEEEEEEecCCC
Q 038410 793 SEILALGFNEKFIRTWEYYFDYCAAGFKSRTLGNYQIVFSRPSIV 837 (850)
Q Consensus 793 ~~~~~~~~~~~~~r~w~~yl~~~~~~f~~~~~~~~q~~~~~~~~~ 837 (850)
+++.+ +|+++|.|+|++||++|+++|+.|.++++|++++||+..
T Consensus 333 ~~~~~-~~~~~~~r~w~~yl~~~~~~F~~~~~~~~q~~~~~~~~~ 376 (383)
T PRK11705 333 PELAD-NYSERFYRMWRYYLLSCAGAFRARDIQLWQVVFSPRGVE 376 (383)
T ss_pred HHHHH-hCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCC
Confidence 99988 699999999999999999999999999999999998743
No 3
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=100.00 E-value=2.3e-64 Score=519.16 Aligned_cols=272 Identities=47% Similarity=0.836 Sum_probs=227.2
Q ss_pred CchHHHHHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHH
Q 038410 554 NTLAQARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEI 633 (850)
Q Consensus 554 ~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l 633 (850)
++++++++||++|||++|+||++|||++|+|||+||++++++|++||.+|++.++++++++||++|||||||||++++++
T Consensus 1 ~~~~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~ 80 (273)
T PF02353_consen 1 HSKKQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYA 80 (273)
T ss_dssp --S---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHH
T ss_pred CccchHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhhhChhhHHHHHHHHHhcccc
Q 038410 634 VKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAE 713 (850)
Q Consensus 634 a~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~Lkp 713 (850)
|+++|++|+|||+|++|.+++++++++.|+++++++.++|+++++ .+||.|+|++|+||++.++++.+|+++.++|||
T Consensus 81 a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp 158 (273)
T PF02353_consen 81 AERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKP 158 (273)
T ss_dssp HHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSET
T ss_pred HHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999987 499999999999999999999999999999999
Q ss_pred CeEEEEEEecCCCCcCCCCcCc-cccccccccCCCCCCCHHHHHHHHhcCCceEEEEeeecCCcHHHHHHHHHHHHHhcH
Q 038410 714 HGLLLLQFSSVPDQCYDGHRLS-PGFITEYVFPGGCLPSLNRITSAMTSSSRLCVEHLENIGIHFYQTLRCWRTNLMEKQ 792 (850)
Q Consensus 714 gG~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~ 792 (850)
||+++++.++.+...+...... .+||.+|||||+.+|+..++...+.+ +||+|.++++++.||++|++.|++||.+++
T Consensus 159 gG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~-~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~ 237 (273)
T PF02353_consen 159 GGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAED-AGLEVEDVENLGRHYARTLRAWRENFDANR 237 (273)
T ss_dssp TEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHH-TT-EEEEEEE-HHHHHHHHHHHHHHHHHTH
T ss_pred CcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhc-CCEEEEEEEEcCcCHHHHHHHHHHHHHHHH
Confidence 9999999999887665544333 49999999999999999999986665 799999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhccCcceEEEE
Q 038410 793 SEILALGFNEKFIRTWEYYFDYCAAGFKSRTLGNYQI 829 (850)
Q Consensus 793 ~~~~~~~~~~~~~r~w~~yl~~~~~~f~~~~~~~~q~ 829 (850)
+++.++ |+++|.|||++||++|+++|+.|.++++||
T Consensus 238 ~~i~~~-~~~~f~r~w~~yl~~~~~~F~~g~~~~~Q~ 273 (273)
T PF02353_consen 238 EEIIAL-FDEEFYRMWRYYLAYCAAGFRAGSIDVFQI 273 (273)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHHHHHHCCCCeEEeC
Confidence 999999 999999999999999999999999999997
No 4
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=100.00 E-value=3e-52 Score=413.37 Aligned_cols=406 Identities=34% Similarity=0.602 Sum_probs=368.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEee----CCeeeecceeeccCCCchHHHHHHHHcCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI----DGVDLDIGFMLFNHVEYPNMMEFLESLGVDMG 76 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~----~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~ 76 (850)
++|+|||+|++||||||.|+++ ++|||+|+.+++||+++|... .|+.+|.|.++.+...|+++.+|++++|++..
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~ 87 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTK 87 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCCc
Confidence 5899999999999999999987 899999999999999999953 57899999999998899999999999999999
Q ss_pred cccceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhcC
Q 038410 77 TSDMSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSRG 156 (850)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (850)
...+++++..+. ..+.|.+..++..++.+...+..+.++.+++++++|....... .+.....++++.+||++++
T Consensus 88 as~Msf~v~~d~-gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~-----~d~~~~~~~tl~~~L~~~~ 161 (447)
T COG2907 88 ASFMSFSVSLDM-GGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAP-----SDNAGQGDTTLAQYLKQRN 161 (447)
T ss_pred ccceeEEEEecC-CceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccc-----hhhhcCCCccHHHHHHhcC
Confidence 999999998776 5578887677888999999999999999999999988741111 1112235889999999999
Q ss_pred CCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH---HhhhcCCCcEEEecCChHHHHHHHHHHhhccCceEeeCC
Q 038410 157 YSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR---LFQLFGHPQCVTVRRHSHSQIDKVSEQLKSWGIQIRMSC 233 (850)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~ 233 (850)
++..|.+.++.|+..++|+++..+++.+|+..++.|+. ++...+.+.|.++.||...++++|++.+ +++|.+++
T Consensus 162 f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~---~~~i~t~~ 238 (447)
T COG2907 162 FGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADI---RGRIETRT 238 (447)
T ss_pred ccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccc---cceeecCC
Confidence 99999999999999999999999999999999998887 5557788999999999999999999988 67899999
Q ss_pred ceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCcceeecEEEEecCCCCCCCCCCCcee
Q 038410 234 EVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRYVYRDVFLHRDKNFMPQNPAAWSA 313 (850)
Q Consensus 234 ~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~~~~~v~l~~d~~~~p~~~~~~~s 313 (850)
+|.+|.+-.+++.|+..+|++-++|+||+|+.++++..++++ ++++.++.++.+.|+.+..++|+|.+++|++...|.+
T Consensus 239 ~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~e-~sp~e~qll~a~~Ys~n~aVlhtd~~lmPrR~~Awas 317 (447)
T COG2907 239 PVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLDE-PSPEERQLLGALRYSANTAVLHTDASLMPRRLRAWAS 317 (447)
T ss_pred ceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcCC-CCHHHHHHHHhhhhhhceeEEeecccccccccccccc
Confidence 999999999999999999998899999999999999999987 7788888999999999999999999999999999999
Q ss_pred eeeccc---CCCceEEEEeccccCCCCCCCCceEEecC--CCCCCccceeeEEeccCCCChHHHHHHHHhhhhcCCCCeE
Q 038410 314 WNFVGS---TNGKICLTYCLNVLQNIGETSMPFLATLN--PDRTPQNTLLKWSTGHSVPSVAASKASLELHLIQGKRGIW 388 (850)
Q Consensus 314 ~~~~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~~l~--~~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~ 388 (850)
|||... ...+..++||+|+++.+... ++.+++++ +-.+|..++.+..+.+|.|++.....++++..+++..+.|
T Consensus 318 wny~~~~~~e~~~~~lty~mN~lq~l~~~-~~~~vtln~~~~~dpa~v~~~~ty~HPlf~~~avraqq~l~alqg~~~tw 396 (447)
T COG2907 318 WNYLGTVQWELCQGSLTYWMNRLQALISV-RDYFVTLNNRPWVDPAHVIAERTYPHPLFDPEAVRAQQELWALQGARRTW 396 (447)
T ss_pred cceeccccccccCcceeccHHHhhcccCC-cceEEEecCCcccChHHhhHHhhcCCcCCCHHHHHHHHHHHhhhcCCCCC
Confidence 999875 34678899999999999887 89999999 6677888888999999999999999999999999999999
Q ss_pred EEccccCCCCCcchhhHHHHHHHHhcccccc
Q 038410 389 YSGVDQGYGFPEDGLKVGMIAAHGVLGKSCA 419 (850)
Q Consensus 389 ~aG~~~g~G~~e~A~~sG~~aA~~ilg~~~~ 419 (850)
|||.|.|.|+||+.+.+|..+|+.+ |++|+
T Consensus 397 fcgAy~g~GFHeDg~~aGl~va~~l-g~~w~ 426 (447)
T COG2907 397 FCGAYFGRGFHEDGLQAGLAVAEDL-GAPWE 426 (447)
T ss_pred cchhhhccccchhhhhhHHHHHHhc-CCccc
Confidence 9999999999999999999999997 66654
No 5
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-35 Score=321.00 Aligned_cols=391 Identities=21% Similarity=0.330 Sum_probs=278.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCcccc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAG--VEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTS 78 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G--~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~ 78 (850)
|+|+|||||+|||+|||+|++++ .+|+|||+.+++||.++|+..+|+.+|.|+|.|... ...+.++++++|++....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~-~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR-KEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc-hHHHHHHHHHhCcHHhhc
Confidence 78999999999999999999999 999999999999999999999999999999999654 488999999999998876
Q ss_pred c--ceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhcC
Q 038410 79 D--MSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSRG 156 (850)
Q Consensus 79 ~--~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (850)
. ....+.+.+|+.++++... +..+...... ++ ....+ .+..... ...+...++.++++|++++
T Consensus 80 ~~~~~~~~i~~~gkl~p~P~~~-i~~ip~~~~~--~~------~~~~~---~~~~~~~--~~~~~~~~d~sv~~f~r~~- 144 (444)
T COG1232 80 WNSTARKYIYYDGKLHPIPTPT-ILGIPLLLLS--SE------AGLAR---ALQEFIR--PKSWEPKQDISVGEFIRRR- 144 (444)
T ss_pred cCCcccceEeeCCcEEECCccc-eeecCCcccc--ch------hHHHH---HHHhhhc--ccCCCCCCCcCHHHHHHHH-
Confidence 2 2344567778888887643 2222111110 00 00000 0011111 1123344799999999999
Q ss_pred CCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH-----Hhh-h---------cCCCcEEEecCChHHHHHHHHHH
Q 038410 157 YSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR-----LFQ-L---------FGHPQCVTVRRHSHSQIDKVSEQ 221 (850)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~-----~~~-~---------~~~~~~~~~~gG~~~l~~~L~~~ 221 (850)
+++++.++++.|+..++|+++.++++...+...+.... ++. . ...+.+.+++||+++++++|++.
T Consensus 145 fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~ 224 (444)
T COG1232 145 FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEK 224 (444)
T ss_pred HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHH
Confidence 99999999999999999999999995431111111111 100 0 01236788999999999999999
Q ss_pred hhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCcceee-cEEEEecC
Q 038410 222 LKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRYVY-RDVFLHRD 300 (850)
Q Consensus 222 l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~~~-~~v~l~~d 300 (850)
++. +|+++++|++|..++.++++++.+|+++.||.||+|+|++.+..++++ ....+.+..+.+.+ +.+++.++
T Consensus 225 l~~---~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~---~~~~~~~~~~~~~s~~~vv~~~~ 298 (444)
T COG1232 225 LEA---KIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD---EAVSKAAKELQYTSVVTVVVGLD 298 (444)
T ss_pred hhh---ceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC---cchhhhhhhccccceEEEEEEec
Confidence 964 499999999999998888888889999999999999999999999986 44566777888866 45555555
Q ss_pred CC---C--------CCCCCC-----Cceeeeeccc-CCCceEEEEeccccCC-----CCCC------CCceEEecCCCCC
Q 038410 301 KN---F--------MPQNPA-----AWSAWNFVGS-TNGKICLTYCLNVLQN-----IGET------SMPFLATLNPDRT 352 (850)
Q Consensus 301 ~~---~--------~p~~~~-----~~~s~~~~~~-~~~~~~~~~~~~~l~~-----l~~~------~~~~~~~l~~~~~ 352 (850)
.. . +|++.. +|.+..++.. |.+..++...+....+ +.+. ++++...+.....
T Consensus 299 ~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~ 378 (444)
T COG1232 299 EKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGD 378 (444)
T ss_pred cccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcc
Confidence 43 2 232222 4444333332 4466666655542111 1100 1111122333344
Q ss_pred Ccc-ceeeEEeccCCCChHHHHHHHHhhh-hc-CCCCeEEEcccc-CCCCCcchhhHHHHHHHHhc
Q 038410 353 PQN-TLLKWSTGHSVPSVAASKASLELHL-IQ-GKRGIWYSGVDQ-GYGFPEDGLKVGMIAAHGVL 414 (850)
Q Consensus 353 ~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~~-~~~~l~~aG~~~-g~G~~e~A~~sG~~aA~~il 414 (850)
|.. .+.||.+++|+|.+++.+....+.. +. ..+||..+|.|. |.|+ .+|+.+|..+|++|+
T Consensus 379 ~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~-~d~I~~g~~aa~~l~ 443 (444)
T COG1232 379 PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGL-PDCIAAGKEAAEQLL 443 (444)
T ss_pred hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCc-hHHHHHHHHHHHHhh
Confidence 443 4569999999999999999998888 33 338999999966 6699 799999999999885
No 6
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=2.2e-34 Score=328.63 Aligned_cols=389 Identities=19% Similarity=0.242 Sum_probs=265.8
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKA----GVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMG 76 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~----G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~ 76 (850)
+||+|||||+|||+||++|+++ |++|+|||+++++||+++|...+|+.+|.|+|++. ..++++.++++++|++..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~-~~~~~~~~l~~~lgl~~~ 81 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFL-ERKKSAPDLVKDLGLEHV 81 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccc-cCChHHHHHHHHcCCCcc
Confidence 6899999999999999999999 99999999999999999999999999999999995 567889999999998765
Q ss_pred ccc--ceeeEEecC-CCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHh
Q 038410 77 TSD--MSFSVSLDK-GQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIK 153 (850)
Q Consensus 77 ~~~--~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 153 (850)
... ....+.+.+ |+.+.++. .+... ....... +...+.. ........ ....+.|+.+|++
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~~p~--~~~~~---~~~~~~~-~~~~~~~----------~~~~~~~~-~~~~d~s~~e~l~ 144 (462)
T TIGR00562 82 LVSDATGQRYVLVNRGKLMPVPT--KIAPF---VKTGLFS-LGGKLRA----------GMDFIRPA-SPGKDESVEEFVR 144 (462)
T ss_pred cccCCCCceEEEECCCceecCCC--ChHHH---hcCCCCC-chhhHHh----------hhhhccCC-CCCCCcCHHHHHH
Confidence 432 112222222 55443321 11110 0000000 0000000 00111111 1124689999999
Q ss_pred hcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH------------Hhhh--------------cCCCcEEEe
Q 038410 154 SRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR------------LFQL--------------FGHPQCVTV 207 (850)
Q Consensus 154 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~------------~~~~--------------~~~~~~~~~ 207 (850)
+. +++.+.+.++.|++.++|+.++++++ +...+..+. +... ..+..+..+
T Consensus 145 ~~-~g~~~~~~~~~p~~~~~~~~~~~~ls---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (462)
T TIGR00562 145 RR-FGDEVVENLIEPLLSGIYAGDPSKLS---LKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTL 220 (462)
T ss_pred Hh-cCHHHHHHHHHHHhcccccCCHHHhh---HHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEec
Confidence 87 88888999999999999999999884 333221110 0000 011226789
Q ss_pred cCChHHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcC
Q 038410 208 RRHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGA 287 (850)
Q Consensus 208 ~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~ 287 (850)
+||+++++++|++.+. .++|++|++|++|+.++++|+|++.+|+++.||+||+|+|++.+..++++ .++...+.+..
T Consensus 221 ~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~-~~~~~~~~l~~ 297 (462)
T TIGR00562 221 ATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLLSE-LSNSASSHLDK 297 (462)
T ss_pred chhHHHHHHHHHHHhc--cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHHhcc-cCHHHHHHHhc
Confidence 9999999999999995 26899999999999999999999988888999999999999999999875 66677888999
Q ss_pred cceeec-EEEEecCCCCCC-----------CCCC-Cceeeeec-----c-cCCCceEEEEecccc--CC---CCCC----
Q 038410 288 FRYVYR-DVFLHRDKNFMP-----------QNPA-AWSAWNFV-----G-STNGKICLTYCLNVL--QN---IGET---- 339 (850)
Q Consensus 288 i~~~~~-~v~l~~d~~~~p-----------~~~~-~~~s~~~~-----~-~~~~~~~~~~~~~~l--~~---l~~~---- 339 (850)
++|.++ ++.+.++.+.++ .... ....+.+. . .+.+...++.+++.. .. +.+.
T Consensus 298 l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~ 377 (462)
T TIGR00562 298 IHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIIN 377 (462)
T ss_pred CCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHH
Confidence 999984 455666543322 1111 01112222 1 234555566555421 11 1110
Q ss_pred --CCceEEecCCCCCCcc-ceeeEEeccCCCChHHHHHHHHhhh-h-cCCCCeEEEcccc-CCCCCcchhhHHHHHHHHh
Q 038410 340 --SMPFLATLNPDRTPQN-TLLKWSTGHSVPSVAASKASLELHL-I-QGKRGIWYSGVDQ-GYGFPEDGLKVGMIAAHGV 413 (850)
Q Consensus 340 --~~~~~~~l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~-~~~~~l~~aG~~~-g~G~~e~A~~sG~~aA~~i 413 (850)
.+++...++....|.. .+.+|.+++|+|.+++.+..+.+.. + ...+||++||+|. |.|+ ++|+.||+++|++|
T Consensus 378 ~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i-~~~i~sg~~~a~~~ 456 (462)
T TIGR00562 378 IVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGI-PDCIDQGKAAASDV 456 (462)
T ss_pred HHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcH-HHHHHHHHHHHHHH
Confidence 0111112233333444 5669999999999999888887765 3 3457999999966 6788 99999999999998
Q ss_pred cc
Q 038410 414 LG 415 (850)
Q Consensus 414 lg 415 (850)
+.
T Consensus 457 ~~ 458 (462)
T TIGR00562 457 LT 458 (462)
T ss_pred HH
Confidence 64
No 7
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=1.9e-34 Score=328.31 Aligned_cols=399 Identities=17% Similarity=0.259 Sum_probs=262.7
Q ss_pred CcEEEECCChHHHHHHHHHHhC------CCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCC
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKA------GVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVD 74 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~------G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~ 74 (850)
|+|+|||||+|||+||++|+++ |++|+|||+++++||+++|.+.+|+.+|.|++++. ..++++.++++++|++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~-~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIV-ARNEHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHh-cCCHHHHHHHHHcCCc
Confidence 5899999999999999999986 37999999999999999999999999999999995 5678899999999998
Q ss_pred cccccc--eeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHH
Q 038410 75 MGTSDM--SFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFI 152 (850)
Q Consensus 75 ~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 152 (850)
...... ...+.+.+++..+++.. .+..+......+.... +.....................++.|+.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~p~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l 152 (463)
T PRK12416 81 EEMVYNETGISYIYSDNTLHPIPSD-TIFGIPMSVESLFSST-------LVSTKGKIVALKDFITKNKEFTKDTSLALFL 152 (463)
T ss_pred cceecCCCCceEEEECCeEEECCCC-CeecCCCChHHhhcCC-------cCCHHHHHHhhhhhccCCCCCCCCCCHHHHH
Confidence 654311 12222333443333221 1100000000000000 0000000001111111111123689999999
Q ss_pred hhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHH-HHH-------HHHhh-------hcCCCcEEEecCChHHHHHH
Q 038410 153 KSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSV-LSF-------CRLFQ-------LFGHPQCVTVRRHSHSQIDK 217 (850)
Q Consensus 153 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~-~~~-------~~~~~-------~~~~~~~~~~~gG~~~l~~~ 217 (850)
++. +++.+.+.++.|++.++|+.++++++..+.... +.+ ...+. ......+++++||+++++++
T Consensus 153 ~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 231 (463)
T PRK12416 153 ESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDR 231 (463)
T ss_pred HHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHH
Confidence 987 888889999999999999999998843211111 111 11100 12234578899999999999
Q ss_pred HHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCcceee-cEEE
Q 038410 218 VSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRYVY-RDVF 296 (850)
Q Consensus 218 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~~~-~~v~ 296 (850)
|++.+++ ++|++|++|++|+.++++|.|++.+|+++.||+||+|+|++.+.+++..+ .....+..+.+.+ .+++
T Consensus 232 l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~---~l~~~~~~~~~~~~~~v~ 306 (463)
T PRK12416 232 LEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQSN---ELNEQFHTFKNSSLISIY 306 (463)
T ss_pred HHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhcCCc---chhHHHhcCCCCceEEEE
Confidence 9999964 68999999999999999999998888889999999999999999888642 3445567777777 4556
Q ss_pred EecCCCC--CCC---------CCC------Cceeeeeccc-CCCceEEEEecc----c---cCCCCCC------CCceEE
Q 038410 297 LHRDKNF--MPQ---------NPA------AWSAWNFVGS-TNGKICLTYCLN----V---LQNIGET------SMPFLA 345 (850)
Q Consensus 297 l~~d~~~--~p~---------~~~------~~~s~~~~~~-~~~~~~~~~~~~----~---l~~l~~~------~~~~~~ 345 (850)
+.++.+. +|. ... .|.+..|... +.+..+++.+.+ . +.++.+. ..++-.
T Consensus 307 l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~ 386 (463)
T PRK12416 307 LGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEK 386 (463)
T ss_pred EEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHH
Confidence 7777432 221 110 1222223322 344555555543 1 1122211 011112
Q ss_pred ecCCCCCCcc-ceeeEEeccCCCChHHHHHHHHhhh-h-cCCCCeEEEcccc-CCCCCcchhhHHHHHHHHhcc
Q 038410 346 TLNPDRTPQN-TLLKWSTGHSVPSVAASKASLELHL-I-QGKRGIWYSGVDQ-GYGFPEDGLKVGMIAAHGVLG 415 (850)
Q Consensus 346 ~l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~-~~~~~l~~aG~~~-g~G~~e~A~~sG~~aA~~ilg 415 (850)
.++....|.. .+.+|.+++|+|..++......+.+ + .+.++|++||+|. |.|+ ++|+.||+++|++|+.
T Consensus 387 ~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i-~~ai~sg~~aA~~i~~ 459 (463)
T PRK12416 387 SLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGI-GACIGNGKNTANEIIA 459 (463)
T ss_pred HhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccH-HHHHHHHHHHHHHHHH
Confidence 2344444444 5669999999999998888777765 3 3458999999954 7777 9999999999999964
No 8
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=3.1e-33 Score=318.66 Aligned_cols=396 Identities=19% Similarity=0.263 Sum_probs=259.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCcccc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAG--VEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTS 78 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G--~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~ 78 (850)
|+|||||||+|||+||+.|+++| ++|+|||+++++||+++|...+|+.+|.|+|++. ..++++.++++++|++....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~-~~~~~~~~l~~~lgl~~~~~ 79 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFL-ARKPSAPALVKELGLEDELV 79 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhc-CCcHHHHHHHHHcCCcccee
Confidence 78999999999999999999988 8999999999999999999999999999999885 46778999999999875432
Q ss_pred cc--eeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhcC
Q 038410 79 DM--SFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSRG 156 (850)
Q Consensus 79 ~~--~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (850)
.. .....+.+|+.+.++.. .+............ +..+....++. .............++.|+++|+.+.
T Consensus 80 ~~~~~~~~~~~~g~~~~~p~~-~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~e~l~~~- 150 (451)
T PRK11883 80 ANTTGQSYIYVNGKLHPIPPG-TVMGIPTSIAPFLF---AGLVSPIGKLR----AAADLRPPRWKPGQDQSVGAFFRRR- 150 (451)
T ss_pred cCCCCcceEEECCeEEECCCC-CeeccCCCchhhhc---CCCCCHHHHHH----hhCcccCCCCCCCCCcCHHHHHHHh-
Confidence 21 22233345554433321 11010000000000 00000000000 0000000111123578999999876
Q ss_pred CCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH------------Hhhh------cCCCcEEEecCChHHHHHHH
Q 038410 157 YSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR------------LFQL------FGHPQCVTVRRHSHSQIDKV 218 (850)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~------------~~~~------~~~~~~~~~~gG~~~l~~~L 218 (850)
+++.+.+.++.|++.++|++++++++ +...+..+. +... .....+++++||++.++++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l 227 (451)
T PRK11883 151 FGDEVVENLIEPLLSGIYAGDIDTLS---LRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEAL 227 (451)
T ss_pred ccHHHHHHHHHHhhceeecCChHHcc---HHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHH
Confidence 88899999999999999999999884 332221111 0000 12446789999999999999
Q ss_pred HHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCcceee-cEEEE
Q 038410 219 SEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRYVY-RDVFL 297 (850)
Q Consensus 219 ~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~~~-~~v~l 297 (850)
++.+... +|++|++|++|+.++++|+|++.+|+++.||+||+|+|+..+.+++.+ +...+.+..++|.+ .++++
T Consensus 228 ~~~l~~~--~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~---~~~~~~~~~~~~~~~~~v~l 302 (451)
T PRK11883 228 EEKLPAG--TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVA---PPAFALFKTIPSTSVATVAL 302 (451)
T ss_pred HHhCcCC--eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhccC---hhHHHHHhCCCCCceEEEEE
Confidence 9998643 899999999999998889999989989999999999999999998754 34567778888887 55667
Q ss_pred ecCCCC--CCC--------C-CCCceeeee-----cc-cCCCceEEEEecccc-----CCCCCC-----CCceEE-ecCC
Q 038410 298 HRDKNF--MPQ--------N-PAAWSAWNF-----VG-STNGKICLTYCLNVL-----QNIGET-----SMPFLA-TLNP 349 (850)
Q Consensus 298 ~~d~~~--~p~--------~-~~~~~s~~~-----~~-~~~~~~~~~~~~~~l-----~~l~~~-----~~~~~~-~l~~ 349 (850)
.++.++ .|. + ...+....+ +. .|.+...+....+.. .++.+. ..+.+. .++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~ 382 (451)
T PRK11883 303 AFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGI 382 (451)
T ss_pred EeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCC
Confidence 777653 111 1 101111111 11 133444444443211 111110 001111 1232
Q ss_pred CCCCcc-ceeeEEeccCCCChHHHHHHHHhhh-hcCCCCeEEEcccc-CCCCCcchhhHHHHHHHHhcc
Q 038410 350 DRTPQN-TLLKWSTGHSVPSVAASKASLELHL-IQGKRGIWYSGVDQ-GYGFPEDGLKVGMIAAHGVLG 415 (850)
Q Consensus 350 ~~~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~~~~~~l~~aG~~~-g~G~~e~A~~sG~~aA~~ilg 415 (850)
...+.. ...+|.+++|.+.+++......+.. +...+|||+||+|+ |.|+ ++|+.||+.+|++|+.
T Consensus 383 ~~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i-~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 383 TGDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGL-PDCIAQAKRAAARLLA 450 (451)
T ss_pred CCCceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccH-HHHHHHHHHHHHHHHh
Confidence 223333 5569999999999888766665554 33357999999977 4566 9999999999999864
No 9
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=3.5e-33 Score=321.02 Aligned_cols=392 Identities=18% Similarity=0.208 Sum_probs=260.4
Q ss_pred CcEEEECCChHHHHHHHHHHhC-CCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCccccc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKA-GVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTSD 79 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~-G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~ 79 (850)
+||+|||||+|||+||++|+++ |++|+|||+++++||+++|.+.+|+.+|.|+|++. ..++.+..+++. |++.....
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~-~~~~~~~~l~~~-gl~~~~~~ 90 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQ-PSDPELTSAVDS-GLRDDLVF 90 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhc-cCcHHHHHHHHc-CChhheec
Confidence 5899999999999999999999 99999999999999999999999999999999995 567777777777 77644321
Q ss_pred ---ceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhcC
Q 038410 80 ---MSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSRG 156 (850)
Q Consensus 80 ---~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (850)
......+.+|+.+.++. .+...+. ..+.+. .+.++... ..+... ......++.|+.+|+.++
T Consensus 91 ~~~~~~~~~~~~g~~~~~p~--~~~~~~~--~~~~~~------~~~~~~~~---~~~~~~-~~~~~~~~~sv~~~l~~~- 155 (496)
T PLN02576 91 PDPQAPRYVVWNGKLRPLPS--NPIDLPT--FDLLSA------PGKIRAGL---GAFGWK-RPPPPGREESVGEFVRRH- 155 (496)
T ss_pred CCCCceEEEEECCEEEEcCC--ChHHhcC--cCcCCh------hHHHHHhH---HHhhcc-CCCCCCCCCcHHHHHHHh-
Confidence 11122334455444332 1100000 000110 01111100 011100 111113689999999987
Q ss_pred CCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH----------------Hhhh---------------cCCCcEE
Q 038410 157 YSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR----------------LFQL---------------FGHPQCV 205 (850)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~----------------~~~~---------------~~~~~~~ 205 (850)
+++...+.++.|++.++|+.++++++ +...+..+. .... ......+
T Consensus 156 ~g~~~~~~~~~p~~~~~~~~~~~~lS---~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (496)
T PLN02576 156 LGDEVFERLIDPFVSGVYAGDPSSLS---MKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVG 232 (496)
T ss_pred cCHHHHHHHHHHHhCceecCCHHHHh---HHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeE
Confidence 89999999999999999999999984 433222211 0000 0223467
Q ss_pred EecCChHHHHHHHHHHhhccCceEeeCCceEEEEecCCc-eEEEee--CCc-EEeCCEEEEecChHHHHHhhcCCCChHH
Q 038410 206 TVRRHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-CSIVCV--NGS-QEFYNGCVMAVHAPDALRILGNQATFDE 281 (850)
Q Consensus 206 ~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~--~G~-~i~ad~VV~A~p~~~~~~ll~~~~~~~~ 281 (850)
.++||+++|+++|++.+.+ ++|++|++|++|+..+++ |.|++. +|+ ++.||+||+|+|+..+..++.+ .++..
T Consensus 233 ~~~gG~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~-~~~~~ 309 (496)
T PLN02576 233 SFRGGLQTLPDALAKRLGK--DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRP-KSPAA 309 (496)
T ss_pred eccchHHHHHHHHHHhhCc--CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcc-cCHHH
Confidence 8899999999999998831 689999999999998886 666543 553 6899999999999999999875 56678
Q ss_pred HHhhcCcceee-cEEEEecCCCCCCC------CCC-----------------Cceeeeecc-cCCCceEEEEeccc----
Q 038410 282 TRILGAFRYVY-RDVFLHRDKNFMPQ------NPA-----------------AWSAWNFVG-STNGKICLTYCLNV---- 332 (850)
Q Consensus 282 ~~~l~~i~~~~-~~v~l~~d~~~~p~------~~~-----------------~~~s~~~~~-~~~~~~~~~~~~~~---- 332 (850)
.+.+..+.|.+ .++.+.++.+.++. ... .|.+..++. .+++...++.++..
T Consensus 310 ~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~ 389 (496)
T PLN02576 310 ADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNT 389 (496)
T ss_pred HHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCc
Confidence 88999999988 44557776654432 100 111122222 14455555555542
Q ss_pred -cCCCCCC-----CCceEE-ecCCCC--CCcc-ceeeEEeccCCCChHHHHHHHHhhh-hcCC--CCeEEEcccc-CCCC
Q 038410 333 -LQNIGET-----SMPFLA-TLNPDR--TPQN-TLLKWSTGHSVPSVAASKASLELHL-IQGK--RGIWYSGVDQ-GYGF 398 (850)
Q Consensus 333 -l~~l~~~-----~~~~~~-~l~~~~--~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~~~~--~~l~~aG~~~-g~G~ 398 (850)
+.++++. ..+.+. .++... .|.. ...+|.+++|+|.+++....+.+.. +... +||++||+|+ |.|+
T Consensus 390 ~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i 469 (496)
T PLN02576 390 GIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVAL 469 (496)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccH
Confidence 1111111 011111 122222 3333 4559999999999999887777766 3444 7999999977 7777
Q ss_pred CcchhhHHHHHHHHhccc
Q 038410 399 PEDGLKVGMIAAHGVLGK 416 (850)
Q Consensus 399 ~e~A~~sG~~aA~~ilg~ 416 (850)
++|+.||+++|++|+..
T Consensus 470 -~~ai~sg~~aA~~i~~~ 486 (496)
T PLN02576 470 -GKCVESGYEAADLVISY 486 (496)
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 99999999999999754
No 10
>PRK07208 hypothetical protein; Provisional
Probab=99.98 E-value=3e-30 Score=295.46 Aligned_cols=395 Identities=17% Similarity=0.239 Sum_probs=257.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCcccc-c
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTS-D 79 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~-~ 79 (850)
+||+|||||+|||+||+.|+++|++|+|+|+++++||++.|...+|+.+|.|+|++. ..++++.+++++++...... .
T Consensus 5 ~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~-~~~~~~~~l~~~l~~~~~~~~~ 83 (479)
T PRK07208 5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFF-SKSPEVMDLWNEILPDDDFLLR 83 (479)
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceec-cCCHHHHHHHHHhcCCCccccc
Confidence 589999999999999999999999999999999999999999999999999999984 67889999999998632211 1
Q ss_pred ceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhcCCCH
Q 038410 80 MSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSRGYSE 159 (850)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 159 (850)
......+.+|+.+.++. .....+ ..+ . ....+. .....+...... ..++.|+.+|+.+. +++
T Consensus 84 ~~~~~~~~~g~~~~~p~--~~~~~l---~~~-~--~~~~~~-------~~~~~~~~~~~~--~~~~~s~~e~l~~~-~g~ 145 (479)
T PRK07208 84 PRLSRIYYRGKFFDYPL--KAFDAL---KNL-G--LWRTAK-------CGASYLKARLRP--RKEEDSFEDWVINR-FGR 145 (479)
T ss_pred cccceEEECCEEecCCc--chhHHH---HhC-C--HhHHHH-------HHHHHHHHhcCC--CCCCCCHHHHHHHh-hCH
Confidence 11112222344433321 000011 000 0 001001 111111111111 12579999999986 888
Q ss_pred HHHHHHHhhhhcccccCCcchhccCCHHHHHHH---------HH-Hhhh-----------c--CCCcEEEecCChHHHHH
Q 038410 160 LFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSF---------CR-LFQL-----------F--GHPQCVTVRRHSHSQID 216 (850)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~---------~~-~~~~-----------~--~~~~~~~~~gG~~~l~~ 216 (850)
.+.+.++.|++.++|+.++++++. ...+.. +. .... . ....+.+++||++.+++
T Consensus 146 ~~~~~~~~p~~~~~~~~~~~~~s~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~ 222 (479)
T PRK07208 146 RLYSTFFKGYTEKVWGVPCDEISA---DWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWE 222 (479)
T ss_pred HHHHHHHHHhhhhhhCCChHHCCC---hHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHH
Confidence 999999999999999999999853 221111 11 0000 0 01356778999999999
Q ss_pred HHHHHhhccCceEeeCCceEEEEecCCce-E-EEe--eCCc--EEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCcce
Q 038410 217 KVSEQLKSWGIQIRMSCEVYSVFPADEGC-S-IVC--VNGS--QEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRY 290 (850)
Q Consensus 217 ~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~-V~~--~~G~--~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~ 290 (850)
+|++.+++.|++|++|++|++|..+++++ . ++. .+|+ ++.||+||+|+|++.+.+++.++.++...+.+..++|
T Consensus 223 ~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~~~~~~~~~~~l~~ 302 (479)
T PRK07208 223 TAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPPPPEVRAAAAGLRY 302 (479)
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCCCHHHHHHHhCCCc
Confidence 99999999999999999999999988773 3 332 2353 5889999999999999988875566677777888988
Q ss_pred ee-cEEEEecCCCC-CCCC-------CCC------ceeeeecccCCCc-eEE--EEecc---ccCCCCCC-----CCceE
Q 038410 291 VY-RDVFLHRDKNF-MPQN-------PAA------WSAWNFVGSTNGK-ICL--TYCLN---VLQNIGET-----SMPFL 344 (850)
Q Consensus 291 ~~-~~v~l~~d~~~-~p~~-------~~~------~~s~~~~~~~~~~-~~~--~~~~~---~l~~l~~~-----~~~~~ 344 (850)
.+ ..+++.++... .|.. ... +..+.....|++. ..+ .++.. .+..+.+. ..+.+
T Consensus 303 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L 382 (479)
T PRK07208 303 RDFITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQEL 382 (479)
T ss_pred ceeEEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHH
Confidence 88 55567776542 1211 100 1111111123333 222 12211 11111110 00111
Q ss_pred EecCCC--CCCcc-ceeeEEeccCCCChHHHHHHHHhhh-hcCCCCeEEEccccCCC--CCcchhhHHHHHHHHhcccc
Q 038410 345 ATLNPD--RTPQN-TLLKWSTGHSVPSVAASKASLELHL-IQGKRGIWYSGVDQGYG--FPEDGLKVGMIAAHGVLGKS 417 (850)
Q Consensus 345 ~~l~~~--~~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~-~~~~~~l~~aG~~~g~G--~~e~A~~sG~~aA~~ilg~~ 417 (850)
..+++. ..+.. .+.+|.+++|+|+.++.+....+.. +++.+||++||++..+. .+++|+.||.++|+.|....
T Consensus 383 ~~l~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 383 ARLGLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred HHcCCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcCC
Confidence 123321 11222 3568999999999999988877765 45678999999865432 23899999999999997653
No 11
>PRK07233 hypothetical protein; Provisional
Probab=99.97 E-value=2.8e-30 Score=293.01 Aligned_cols=392 Identities=19% Similarity=0.213 Sum_probs=251.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCcccccc-
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTSDM- 80 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~~- 80 (850)
+|||||||++||+||++|+++|++|+|||+++++||++.|...+|+.+|.|.|++. ..++++.++++++|+.......
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~-~~~~~~~~l~~~lg~~~~~~~~~ 79 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIF-KSDEALLELLDELGLEDKLRWRE 79 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhc-cccHHHHHHHHHcCCCCceeecc
Confidence 69999999999999999999999999999999999999999999999999999984 5788999999999987543211
Q ss_pred -eeeEEecCCCccccCCCCCCchhhHHhh-hccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhcCCC
Q 038410 81 -SFSVSLDKGQGYEWGTRNGLSSLFAQKK-NVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSRGYS 158 (850)
Q Consensus 81 -~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 158 (850)
...+. .+++.+++.+ ...... ..... .+..++....... ... ......++.++++|+.+. ..
T Consensus 80 ~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~-~~~~~~~~~s~~~~l~~~-~~ 143 (434)
T PRK07233 80 TKTGYY-VDGKLYPLGT------PLELLRFPHLSL------IDKFRLGLLTLLA-RRI-KDWRALDKVPAEEWLRRW-SG 143 (434)
T ss_pred CceEEE-ECCeEecCCC------HHHHHcCCCCCH------HHHHHhHHHHHhh-hhc-ccccccccccHHHHHHHh-cC
Confidence 11122 2233332221 110000 00000 0111111000000 000 111112568999999987 56
Q ss_pred HHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHHHhhhc----CCCcEEEecCChHHHHHHHHHHhhccCceEeeCCc
Q 038410 159 ELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRLFQLF----GHPQCVTVRRHSHSQIDKVSEQLKSWGIQIRMSCE 234 (850)
Q Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~ 234 (850)
+...+.++.|++..+|+.+++++ |+..++..+...... ....+.+++||++.++++|++.+++.|++|++|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~ 220 (434)
T PRK07233 144 EGVYEVFWEPLLESKFGDYADDV---SAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTP 220 (434)
T ss_pred HHHHHHHHHHHHhcccCCCcccc---CHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCC
Confidence 77778899999999999999888 666555544421111 12347789999999999999999999999999999
Q ss_pred eEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCcceee-cEEEEecCCCCCC-------C
Q 038410 235 VYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRYVY-RDVFLHRDKNFMP-------Q 306 (850)
Q Consensus 235 V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~~~-~~v~l~~d~~~~p-------~ 306 (850)
|++|+.+++++.+.+.+|++++||+||+|+|+..+..++++ .++...+.+..+.|.+ ..+++.++.++.+ .
T Consensus 221 V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 299 (434)
T PRK07233 221 VTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLVPD-LPADVLARLRRIDYQGVVCMVLKLRRPLTDYYWLNIND 299 (434)
T ss_pred eeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhcCC-CcHHHHhhhcccCccceEEEEEEecCCCCCCceeeecC
Confidence 99999988888666667778999999999999999988854 4555667788888877 4456777765321 1
Q ss_pred CCCCceee----eecc--cCCCceE--EEEeccccCC---CCC-----CCCceEEecCCCCC----CccceeeEEeccCC
Q 038410 307 NPAAWSAW----NFVG--STNGKIC--LTYCLNVLQN---IGE-----TSMPFLATLNPDRT----PQNTLLKWSTGHSV 366 (850)
Q Consensus 307 ~~~~~~s~----~~~~--~~~~~~~--~~~~~~~l~~---l~~-----~~~~~~~~l~~~~~----~~~~~~~w~~~~p~ 366 (850)
....+... ++.. .+.+..+ +.++...-.. +.+ ...+.+..+.+... ....+.+|.+++|.
T Consensus 300 ~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~ 379 (434)
T PRK07233 300 PGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPI 379 (434)
T ss_pred CCCCcceEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEecccccc
Confidence 11111111 1111 1123332 2333321111 110 00111111222111 11134577888898
Q ss_pred CChHHHHHHHHhhhhcCCCCeEEEcccc-C-C-CCCcchhhHHHHHHHHhccc
Q 038410 367 PSVAASKASLELHLIQGKRGIWYSGVDQ-G-Y-GFPEDGLKVGMIAAHGVLGK 416 (850)
Q Consensus 367 ~~~~~~~~~~~l~~~~~~~~l~~aG~~~-g-~-G~~e~A~~sG~~aA~~ilg~ 416 (850)
+.+++....+.+ .++.+|||+||++. . . +.+++|+.||++||+.|+..
T Consensus 380 ~~~g~~~~~~~~--~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~ 430 (434)
T PRK07233 380 YEPGYLDKIPPY--DTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILED 430 (434)
T ss_pred ccCchhhcCCCc--ccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhh
Confidence 877644332222 24568999999942 1 2 24499999999999999754
No 12
>PLN02268 probable polyamine oxidase
Probab=99.97 E-value=3.6e-30 Score=290.97 Aligned_cols=383 Identities=18% Similarity=0.247 Sum_probs=234.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCC-CchHHHHHHHHcCCCccccc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHV-EYPNMMEFLESLGVDMGTSD 79 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~-~~~~~~~l~~~lgl~~~~~~ 79 (850)
++|+|||||+|||+||+.|.++|++|+|||+++++|||++|....|+.+|.|+++++.. ..+.+.++++++|++.....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 48999999999999999999999999999999999999999888899999999999643 24458899999999765443
Q ss_pred ceeeEEecCC-Cccc-cCCCCCCchhhHHhhhccChHHHHHH-HHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhc-
Q 038410 80 MSFSVSLDKG-QGYE-WGTRNGLSSLFAQKKNVLNPYFWQML-REMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSR- 155 (850)
Q Consensus 80 ~~~~~~~~~g-~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~- 155 (850)
....+.+..+ ..+. +.. . ...+ .......+ ..+.++...... ... ...++.|+.+|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~-~~~~--------~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~s~~~~~~~~~ 144 (435)
T PLN02268 81 GDNSVLYDHDLESYALFDM-D-GNQV--------PQELVTKVGETFERILEETEK----VRD--EHEEDMSLLQAISIVL 144 (435)
T ss_pred CCccccccccccccceecC-C-CCCC--------CHHHHHHHHHHHHHHHHHHHH----HHh--ccCCCcCHHHHHHHHh
Confidence 3222222211 1111 111 0 0001 11111111 111111111111 000 112578899986443
Q ss_pred ---------CCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHHHhhhcCCCcEEEecCChHHHHHHHHHHhhccC
Q 038410 156 ---------GYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRLFQLFGHPQCVTVRRHSHSQIDKVSEQLKSWG 226 (850)
Q Consensus 156 ---------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G 226 (850)
++...+.+.++.| +.+.++.++++++. ... .....+. +....+++|+++++++|++ +
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~---~~~----~~~~~~~-g~~~~~~~G~~~l~~~l~~-----~ 210 (435)
T PLN02268 145 ERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISL---KSW----DQEELLE-GGHGLMVRGYDPVINTLAK-----G 210 (435)
T ss_pred hhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCch---hhc----CCccccC-CCceeecCCHHHHHHHHhc-----c
Confidence 1344444555566 35567888887732 211 0000111 1224678899999999977 4
Q ss_pred ceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHh---hcCCCChHHHHhhcCcceee-cEEEEecCCC
Q 038410 227 IQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRI---LGNQATFDETRILGAFRYVY-RDVFLHRDKN 302 (850)
Q Consensus 227 ~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~l---l~~~~~~~~~~~l~~i~~~~-~~v~l~~d~~ 302 (850)
.+|++|++|++|...+++|.|++.+|+++.||+||+|+|+..+.+. +.+.+++...+++..+.|.. .++++.++.+
T Consensus 211 ~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~ 290 (435)
T PLN02268 211 LDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSV 290 (435)
T ss_pred CceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCC
Confidence 4799999999999999999999999988999999999999998753 22445666788889999987 7788999999
Q ss_pred CCCCCCC-------Cceeeeecc--cCCCceEEEEeccc-----cCCCCCC-----CCceEE-ecCCCCCCcc-ceeeEE
Q 038410 303 FMPQNPA-------AWSAWNFVG--STNGKICLTYCLNV-----LQNIGET-----SMPFLA-TLNPDRTPQN-TLLKWS 361 (850)
Q Consensus 303 ~~p~~~~-------~~~s~~~~~--~~~~~~~~~~~~~~-----l~~l~~~-----~~~~~~-~l~~~~~~~~-~~~~w~ 361 (850)
+||.... .+....+.. ...+..++..+... +..+.+. ..+.+. .++....|.. ...+|.
T Consensus 291 fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~ 370 (435)
T PLN02268 291 FWPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWG 370 (435)
T ss_pred CCCCCceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecccC
Confidence 8875321 011111111 12333344444331 1222211 001111 1221222333 445775
Q ss_pred e------ccCCCChHH-HHHHHHhhhhcCCCCeEEEcccc---CCCCCcchhhHHHHHHHHhcc
Q 038410 362 T------GHSVPSVAA-SKASLELHLIQGKRGIWYSGVDQ---GYGFPEDGLKVGMIAAHGVLG 415 (850)
Q Consensus 362 ~------~~p~~~~~~-~~~~~~l~~~~~~~~l~~aG~~~---g~G~~e~A~~sG~~aA~~ilg 415 (850)
. ++..+.++. ....+.+. ++.++|||||+++ +.|++|+|+.||+++|++|+.
T Consensus 371 ~dp~~~G~~~~~~~g~~~~~~~~l~--~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~ 432 (435)
T PLN02268 371 SDPNSLGCYSYDLVGKPHDLYERLR--APVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRM 432 (435)
T ss_pred CCCCCCccCCCCCCCCCHHHHHHHh--CCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHH
Confidence 2 222222332 12222222 4567899999965 457889999999999999964
No 13
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.97 E-value=5.6e-30 Score=290.82 Aligned_cols=404 Identities=18% Similarity=0.200 Sum_probs=241.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEe-eCCeeeecceeeccCCCchHHHHHHHHcCCCcccccc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT-IDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTSDM 80 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~-~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~~ 80 (850)
+|+|||||++||+||++|+++|++|+|||+++++||++.|.. .+|+.+|.|.|++. ..++++.++++++|+.......
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~-~~~~~~~~l~~~lg~~~~~~~~ 79 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFF-GAYPNMLQLLKELNIEDRLQWK 79 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceec-cCCchHHHHHHHcCCccceeec
Confidence 599999999999999999999999999999999999999985 47899999999985 6788999999999987543211
Q ss_pred e--eeEEe--cCCCccccCCCCCCchhhHHhhhccC-hHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhc
Q 038410 81 S--FSVSL--DKGQGYEWGTRNGLSSLFAQKKNVLN-PYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSR 155 (850)
Q Consensus 81 ~--~~~~~--~~g~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 155 (850)
. ..+.. .++....+..+ .+...+........ ... -...+..++..................++.|+.+|+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 157 (453)
T TIGR02731 80 SHSMIFNQPDKPGTFSRFDFP-DIPAPFNGVAAILRNNDM-LTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQ 157 (453)
T ss_pred CCceEEecCCCCcceeeccCC-CCCCCHHHHHHHhcCcCC-CCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHc
Confidence 1 11111 11111111110 01111100000000 000 000111111111100000000111112589999999999
Q ss_pred CCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHHH-hhhcCCCcEEEecCC-hHHHHHHHHHHhhccCceEeeCC
Q 038410 156 GYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRL-FQLFGHPQCVTVRRH-SHSQIDKVSEQLKSWGIQIRMSC 233 (850)
Q Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~gG-~~~l~~~L~~~l~~~G~~i~~~~ 233 (850)
++++.+.+.++.|++.++++.+++++ |+..++.++.. +....+.......|+ ++.++++|.+.+++.|++|++|+
T Consensus 158 ~~~~~~~~~~~~pl~~~~~~~~p~~~---S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~ 234 (453)
T TIGR02731 158 GVPERVNDEVFIAMSKALNFINPDEL---SMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNS 234 (453)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCC
Confidence 99999999999999999999999887 66666655542 221122222234443 57899999999998999999999
Q ss_pred ceEEEEecCCc-e-EEEeeCCc-----EEeCCEEEEecChHHHHHhhcCCCC-hHHHHhhcCcceee-cEEEEecCCCCC
Q 038410 234 EVYSVFPADEG-C-SIVCVNGS-----QEFYNGCVMAVHAPDALRILGNQAT-FDETRILGAFRYVY-RDVFLHRDKNFM 304 (850)
Q Consensus 234 ~V~~I~~~~~~-v-~V~~~~G~-----~i~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~i~~~~-~~v~l~~d~~~~ 304 (850)
+|++|..++++ + .|++.+|+ ++.||+||+|+|++.+.++++.... ....+.+..+++.+ .++++.++.++.
T Consensus 235 ~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~ 314 (453)
T TIGR02731 235 RLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLT 314 (453)
T ss_pred eeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccC
Confidence 99999875544 4 57776665 7899999999999998888865322 34556677777755 666778877654
Q ss_pred CCC-------CCC-----ceeeeecccCCCceEEEEeccccCC---CCCC-----CCceEEecCCC----CCCcc-ceee
Q 038410 305 PQN-------PAA-----WSAWNFVGSTNGKICLTYCLNVLQN---IGET-----SMPFLATLNPD----RTPQN-TLLK 359 (850)
Q Consensus 305 p~~-------~~~-----~~s~~~~~~~~~~~~~~~~~~~l~~---l~~~-----~~~~~~~l~~~----~~~~~-~~~~ 359 (850)
+.. ... |+...+...+++..++.++.+..+. +.+. ..+.+..+.+. ..+.. +..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~ 394 (453)
T TIGR02731 315 TVDHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYK 394 (453)
T ss_pred CCCceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEE
Confidence 322 100 0011111123334555554432222 1110 00111111111 11222 2234
Q ss_pred EEe---ccCCCChHHHHHHHHhhh-hcCCCCeEEEccccC---CCCCcchhhHHHHHHHHhc
Q 038410 360 WST---GHSVPSVAASKASLELHL-IQGKRGIWYSGVDQG---YGFPEDGLKVGMIAAHGVL 414 (850)
Q Consensus 360 w~~---~~p~~~~~~~~~~~~l~~-~~~~~~l~~aG~~~g---~G~~e~A~~sG~~aA~~il 414 (850)
|.. +.+.+.++.... .+. .++.+|||+||+|+. .|.+|+|+.||++||+.|+
T Consensus 395 ~~~~p~a~~~~~pg~~~~---~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 395 VVKTPRSVYKTTPGRQQY---RPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred EEECCCceeccCCCChhh---CccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 432 222222332211 222 356789999999773 4567999999999999874
No 14
>PLN02612 phytoene desaturase
Probab=99.97 E-value=1.1e-29 Score=292.17 Aligned_cols=299 Identities=18% Similarity=0.220 Sum_probs=200.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEee-CCeeeecceeeccCCCchHHHHHHHHcCCCccccc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI-DGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTSD 79 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~ 79 (850)
++|+|||||++||+||++|+++|++|+|+|+++++||++.|+.. +|+.+|.|.|++. ..++++.++++++|+......
T Consensus 94 ~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~-g~~~~~~~ll~elG~~~~~~~ 172 (567)
T PLN02612 94 LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFF-GAYPNVQNLFGELGINDRLQW 172 (567)
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEe-CCCchHHHHHHHhCCccccee
Confidence 58999999999999999999999999999999999999999875 8999999999995 678899999999999764321
Q ss_pred c--eeeEEec--CCCccccCCCCCCchhhHHhhhccC-hHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhh
Q 038410 80 M--SFSVSLD--KGQGYEWGTRNGLSSLFAQKKNVLN-PYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKS 154 (850)
Q Consensus 80 ~--~~~~~~~--~g~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 154 (850)
. ...+... .+....+..+..++..+......+. .... .+.+.+++..................++.|+.+|+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~l-s~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~ 251 (567)
T PLN02612 173 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEML-TWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRK 251 (567)
T ss_pred cccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccC-CHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHh
Confidence 1 1111111 1221111111111111100000000 0000 0001111111000000000001111257999999999
Q ss_pred cCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH-HhhhcCCCcEEEecCCh-HHHHHHHHHHhhccCceEeeC
Q 038410 155 RGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR-LFQLFGHPQCVTVRRHS-HSQIDKVSEQLKSWGIQIRMS 232 (850)
Q Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~gG~-~~l~~~L~~~l~~~G~~i~~~ 232 (850)
.+.++.+.+.++.|++.+++..+++++ |+..++..+. .+....+....++.|+. ..++++|++.+++.|++|++|
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~~p~~~---S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~ 328 (567)
T PLN02612 252 QGVPDRVNDEVFIAMSKALNFINPDEL---SMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLN 328 (567)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCHHHh---hHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeC
Confidence 999999999999999999999988888 6666665444 22323334455566665 689999999999899999999
Q ss_pred CceEEEEecCCc--eEEEeeCCcEEeCCEEEEecChHHHHHhhcCCC-ChHHHHhhcCcceee-cEEEEecCCCCC
Q 038410 233 CEVYSVFPADEG--CSIVCVNGSQEFYNGCVMAVHAPDALRILGNQA-TFDETRILGAFRYVY-RDVFLHRDKNFM 304 (850)
Q Consensus 233 ~~V~~I~~~~~~--v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~-~~~~~~~l~~i~~~~-~~v~l~~d~~~~ 304 (850)
++|++|+.++++ +.|++.+|+++.||+||+|+|++.+..+++... +.+..+.+..+.+.+ .++++.++.+++
T Consensus 329 ~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~ 404 (567)
T PLN02612 329 SRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLK 404 (567)
T ss_pred CeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccC
Confidence 999999987655 357778898899999999999999888876532 224455566666665 566788888764
No 15
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.97 E-value=1.9e-29 Score=284.81 Aligned_cols=296 Identities=19% Similarity=0.221 Sum_probs=197.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEe-eCCeeeecceeeccCCCchHHHHHHHHcCCCcccccc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT-IDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTSDM 80 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~-~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~~ 80 (850)
+|+|||||++||+||++|+++|++|+|+|+++++||+++|+. .+|+.+|.|+|++. ..++++.++++++|+.......
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~-~~~~~~~~~~~~lg~~~~~~~~ 79 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFF-GCYANLFRLMKKVGAEDNLLLK 79 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEec-CchHHHHHHHHHcCCccccccc
Confidence 589999999999999999999999999999999999999974 57999999999995 6789999999999987654322
Q ss_pred e-eeEEe-cCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHH--HHHHHhh---c---CCCCCCCCCcHHH
Q 038410 81 S-FSVSL-DKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDV--LSYVEEL---E---NSPDIDRNETLGH 150 (850)
Q Consensus 81 ~-~~~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~---~~~~~~~~~s~~~ 150 (850)
. ..... .+++.........+...+.....+....... +.+.+++.... ....... . ......++.|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls-~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 158 (474)
T TIGR02732 80 EHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLK-WVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFAE 158 (474)
T ss_pred cceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCC-HHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHHH
Confidence 1 11112 2222211111011111111111111000000 11111111111 0000000 0 0111225799999
Q ss_pred HHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHHHhh-hcCCCcEEEecCChHH-HHHHHHHHhhccCce
Q 038410 151 FIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRLFQ-LFGHPQCVTVRRHSHS-QIDKVSEQLKSWGIQ 228 (850)
Q Consensus 151 ~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~gG~~~-l~~~L~~~l~~~G~~ 228 (850)
|+++++.++...++++.|++.+++..+++++ |+..++..+..+. .........++||... +.+.|.+.|+++|++
T Consensus 159 ~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~---Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~ 235 (474)
T TIGR02732 159 WFLSHGGSLGSIKRMWDPIAYALGFIDCENI---SARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGK 235 (474)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCE
Confidence 9999988888899999999999999999988 6666555433222 2233466677888766 667799999999999
Q ss_pred EeeCCceEEEEecC--Cc---e-EEEeeCC---cEEeCCEEEEecChHHHHHhhcCCC-ChHHHHhhcCcceee-cEEEE
Q 038410 229 IRMSCEVYSVFPAD--EG---C-SIVCVNG---SQEFYNGCVMAVHAPDALRILGNQA-TFDETRILGAFRYVY-RDVFL 297 (850)
Q Consensus 229 i~~~~~V~~I~~~~--~~---v-~V~~~~G---~~i~ad~VV~A~p~~~~~~ll~~~~-~~~~~~~l~~i~~~~-~~v~l 297 (850)
|+++++|++|+.++ ++ + .|++.+| +++.||+||+|+|++.+.+|+++.. .......+..+++.+ .++++
T Consensus 236 i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l 315 (474)
T TIGR02732 236 FHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQL 315 (474)
T ss_pred EECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEE
Confidence 99999999999864 22 2 3445444 4588999999999999999997532 123566777888877 56678
Q ss_pred ecCCC
Q 038410 298 HRDKN 302 (850)
Q Consensus 298 ~~d~~ 302 (850)
.++..
T Consensus 316 ~~~~~ 320 (474)
T TIGR02732 316 RYDGW 320 (474)
T ss_pred Eeccc
Confidence 88754
No 16
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.97 E-value=6.6e-30 Score=262.35 Aligned_cols=396 Identities=17% Similarity=0.230 Sum_probs=265.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeE--EEEecCCCCCCcceE-EeeCCeeeecceeeccCCCc--hHHHHHHHHcCCCc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEV--VLYEKEDSLGGHAKT-VTIDGVDLDIGFMLFNHVEY--PNMMEFLESLGVDM 75 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V--~VlEa~~~~GG~~~s-~~~~G~~~d~G~~~~~~~~~--~~~~~l~~~lgl~~ 75 (850)
|+|||||||++||+|||+|++++.+| +|+|+++|+||+++| ...+|+.+|.|++.+.+... ..+++++.++|++.
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~ 91 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLED 91 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccc
Confidence 68999999999999999999998755 569999999999999 44489999999999965443 25779999999986
Q ss_pred ccccceeeE-------EecCCCccccCCCCCCch-hhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCc
Q 038410 76 GTSDMSFSV-------SLDKGQGYEWGTRNGLSS-LFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNET 147 (850)
Q Consensus 76 ~~~~~~~~~-------~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 147 (850)
+....+... .+..++....+ ..+.. ++....+...+.++.++.+..+ . ..+....++|
T Consensus 92 e~~~i~~~~paaknr~l~~~~~L~~vP--~sl~~s~~~~l~p~~k~L~~a~l~e~fr----------~--~~~~~~~dES 157 (491)
T KOG1276|consen 92 ELQPIDISHPAAKNRFLYVPGKLPTVP--SSLVGSLKFSLQPFGKPLLEAFLRELFR----------K--KVSDPSADES 157 (491)
T ss_pred eeeecCCCChhhhheeeccCcccccCC--cccccccccccCcccchhHHHHHhhhcc----------c--cCCCCCcccc
Confidence 654433221 22222222221 12222 1111222222333322222221 1 1123336899
Q ss_pred HHHHHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH---------Hh-h---h---------------c
Q 038410 148 LGHFIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR---------LF-Q---L---------------F 199 (850)
Q Consensus 148 ~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~---------~~-~---~---------------~ 199 (850)
+++|++++ +++++.++++.|++.++|+.++.+++.-+.+..+...+ +. . . .
T Consensus 158 V~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~ 236 (491)
T KOG1276|consen 158 VESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKK 236 (491)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcc
Confidence 99999998 88999999999999999999999995433332222221 00 0 0 1
Q ss_pred CCCcEEEecCChHHHHHHHHHHhhccCceEeeCCceEEEEecC-CceEEEeeC--Cc-EEeCCEEEEecChHHHHHhhcC
Q 038410 200 GHPQCVTVRRHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPAD-EGCSIVCVN--GS-QEFYNGCVMAVHAPDALRILGN 275 (850)
Q Consensus 200 ~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v~V~~~~--G~-~i~ad~VV~A~p~~~~~~ll~~ 275 (850)
+.-..+.++||++.+++++.+.|.+..+.|.++-++..+.... ++|.+++.+ +. ....++++.|.|+..+.++++.
T Consensus 237 e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~ 316 (491)
T KOG1276|consen 237 EKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRG 316 (491)
T ss_pred cccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhccc
Confidence 1224567899999999999999999889999999999998764 447666554 32 3445666679999999999986
Q ss_pred CCChHHHHhhcCcceeecEEE-EecCCC-----------CCCCCCC--------CceeeeecccCCCceEEEEecc--cc
Q 038410 276 QATFDETRILGAFRYVYRDVF-LHRDKN-----------FMPQNPA--------AWSAWNFVGSTNGKICLTYCLN--VL 333 (850)
Q Consensus 276 ~~~~~~~~~l~~i~~~~~~v~-l~~d~~-----------~~p~~~~--------~~~s~~~~~~~~~~~~~~~~~~--~l 333 (850)
..+.+..++.+++|.++.++ +.+... ++|.... .|++..|+..... ..++++++ -.
T Consensus 317 -~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s-~~vtvm~gg~~~ 394 (491)
T KOG1276|consen 317 -LQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPS-PKVTVMMGGGGS 394 (491)
T ss_pred -cchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCC-ceEEEEeccccc
Confidence 66778899999999997665 444331 5563221 5666666643222 13333332 11
Q ss_pred CC---CCCC-------CC-ceEEecCCCCCCccce-eeEEeccCCCChHHHHHHHHhhh-hcCC--CCeEEEcc-ccCCC
Q 038410 334 QN---IGET-------SM-PFLATLNPDRTPQNTL-LKWSTGHSVPSVAASKASLELHL-IQGK--RGIWYSGV-DQGYG 397 (850)
Q Consensus 334 ~~---l~~~-------~~-~~~~~l~~~~~~~~~~-~~w~~~~p~~~~~~~~~~~~l~~-~~~~--~~l~~aG~-~~g~G 397 (850)
.+ .... .. .+-..|++...|.... .-|+.+.|+|++++.+.+..+.. ++.. .+|+++|. |.|.+
T Consensus 395 ~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~Gv~ 474 (491)
T KOG1276|consen 395 TNTSLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGGVS 474 (491)
T ss_pred ccCcCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCCCC
Confidence 11 1110 01 1112345555566533 47889999999999999888887 4444 48999999 66899
Q ss_pred CCcchhhHHHHHHHHhc
Q 038410 398 FPEDGLKVGMIAAHGVL 414 (850)
Q Consensus 398 ~~e~A~~sG~~aA~~il 414 (850)
+ .+|+.+|+.+|.+++
T Consensus 475 v-gdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 475 V-GDCIESGRKTAVEVI 490 (491)
T ss_pred h-hHHHHhhHHHHHhhc
Confidence 9 899999999998875
No 17
>PLN02487 zeta-carotene desaturase
Probab=99.97 E-value=4.4e-29 Score=282.75 Aligned_cols=412 Identities=16% Similarity=0.150 Sum_probs=250.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEe-eCCeeeecceeeccCCCchHHHHHHHHcCCCccccc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVT-IDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTSD 79 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~-~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~ 79 (850)
|+|+|||||++||+||+.|+++|++|+|+|+++++||++.+.. .+|+.+|.|.|++. ..++++.++++++|+......
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~-~~~~~~~~ll~~LGl~~~~~~ 154 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFF-GCYNNLFRLMKKVGADENLLV 154 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEec-CCcHHHHHHHHhcCCcccccc
Confidence 4899999999999999999999999999999999999999996 47999999999995 678999999999999765421
Q ss_pred c-eeeEEe-cCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHH--HHHHHhh------cCCCCCCCCCcHH
Q 038410 80 M-SFSVSL-DKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDV--LSYVEEL------ENSPDIDRNETLG 149 (850)
Q Consensus 80 ~-~~~~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~s~~ 149 (850)
. ...... .+|..........+...+.....+....... +.+.+++.... ....... .......++.|+.
T Consensus 155 ~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls-~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~ 233 (569)
T PLN02487 155 KDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLE-PYDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFS 233 (569)
T ss_pred cccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCC-HHHHHhhcccccccchhhhccCccccccccccccCCcHH
Confidence 1 111111 2222211110000111110000000000000 00101100000 0000000 0111123579999
Q ss_pred HHHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHHHhh-hcCCCcEEEecCChH-HHHHHHHHHhhccCc
Q 038410 150 HFIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRLFQ-LFGHPQCVTVRRHSH-SQIDKVSEQLKSWGI 227 (850)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~gG~~-~l~~~L~~~l~~~G~ 227 (850)
+|+++++.++...++++.|++.+.++.+++++ |+..++..+.... ........+++||+. .+++.+++.|+++|+
T Consensus 234 ~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~---SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg 310 (569)
T PLN02487 234 DWFTSHGGTRMSIKRMWDPIAYALGFIDCDNI---SARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGG 310 (569)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHH---HHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCC
Confidence 99999988887899999999999999999999 6666665555322 233345778899998 499999999999999
Q ss_pred eEeeCCceEEEEecC--Cc----eEEEe---eCCcEEeCCEEEEecChHHHHHhhcCCCC-hHHHHhhcCcceee-cEEE
Q 038410 228 QIRMSCEVYSVFPAD--EG----CSIVC---VNGSQEFYNGCVMAVHAPDALRILGNQAT-FDETRILGAFRYVY-RDVF 296 (850)
Q Consensus 228 ~i~~~~~V~~I~~~~--~~----v~V~~---~~G~~i~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~i~~~~-~~v~ 296 (850)
+|+++++|++|+.++ ++ +.|++ .+++++.+|+||+|+|++.+.+|+++.+. .+....+..+.+.+ .+++
T Consensus 311 ~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~ 390 (569)
T PLN02487 311 RFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQ 390 (569)
T ss_pred EEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEE
Confidence 999999999999873 22 34666 33456889999999999999999976421 12355666776666 6667
Q ss_pred EecCCCCC-CC-------------CCCCc----eeeee--c---cc------CCCceEEEEecc---ccCCCCCC-----
Q 038410 297 LHRDKNFM-PQ-------------NPAAW----SAWNF--V---GS------TNGKICLTYCLN---VLQNIGET----- 339 (850)
Q Consensus 297 l~~d~~~~-p~-------------~~~~~----~s~~~--~---~~------~~~~~~~~~~~~---~l~~l~~~----- 339 (850)
+.+|..+. |. ....| ..|.| . .. +.....+...+. .+..+.+.
T Consensus 391 L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~ 470 (569)
T PLN02487 391 LRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEK 470 (569)
T ss_pred EEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHH
Confidence 88886532 11 00111 11222 1 00 001122222222 11122111
Q ss_pred CCceEEecCCCCCCccce--eeEEeccCCCChHHHHHHHHhhhhcCCCCeEEEccccCCCCC---cchhhHHHHHHHHhc
Q 038410 340 SMPFLATLNPDRTPQNTL--LKWSTGHSVPSVAASKASLELHLIQGKRGIWYSGVDQGYGFP---EDGLKVGMIAAHGVL 414 (850)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~--~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~---e~A~~sG~~aA~~il 414 (850)
..+.+..+.|......+. .......+.|...+.....+.+...+.+|||+||||+..+++ |+|+.||.+||+.|+
T Consensus 471 ~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~ 550 (569)
T PLN02487 471 VHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYIC 550 (569)
T ss_pred HHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHH
Confidence 011112223222211111 223344444443332221223335678899999999977766 999999999999997
Q ss_pred ccc
Q 038410 415 GKS 417 (850)
Q Consensus 415 g~~ 417 (850)
.+.
T Consensus 551 ~~~ 553 (569)
T PLN02487 551 EAG 553 (569)
T ss_pred HHh
Confidence 654
No 18
>PLN02529 lysine-specific histone demethylase 1
Probab=99.97 E-value=2.4e-28 Score=281.52 Aligned_cols=384 Identities=13% Similarity=0.126 Sum_probs=231.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeC--C--eeeecceeeccCCCchHHHHHHHHcCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID--G--VDLDIGFMLFNHVEYPNMMEFLESLGVDMG 76 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~--G--~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~ 76 (850)
++|+|||||++||+||..|+++|++|+|||+++++||++.|.... | +.+|+|++++++.....+..+.+++|++..
T Consensus 161 ~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~ 240 (738)
T PLN02529 161 GSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLH 240 (738)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCcc
Confidence 589999999999999999999999999999999999999999874 3 489999999976555557799999999876
Q ss_pred cccceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhcC
Q 038410 77 TSDMSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSRG 156 (850)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (850)
.......++..+|..........+ ...+.+.+.....+ ..... ...++.|+.+|+++..
T Consensus 241 ~~~~~~~~~~~~G~~v~~~~~~~~-----------~~~~~~~l~~~~~l-------~~~~~---~~~~d~Sl~~~le~~~ 299 (738)
T PLN02529 241 KVRDNCPLYKPDGALVDKEIDSNI-----------EFIFNKLLDKVTEL-------RQIMG---GFANDISLGSVLERLR 299 (738)
T ss_pred ccCCCceEEeCCCcCcchhhhhhH-----------HHHHHHHHHHHHHH-------HHhcc---cCccCCCHHHHHHHHH
Confidence 654444455555554322110000 00111111111111 11111 1225789999987542
Q ss_pred ------CCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHHHhhhcCCCcEEEecCChHHHHHHHHHHhhccCceEe
Q 038410 157 ------YSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRLFQLFGHPQCVTVRRHSHSQIDKVSEQLKSWGIQIR 230 (850)
Q Consensus 157 ------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~ 230 (850)
.++. ...++......+....+..++.+++.. +.........+....+.||+++++++|++.+ .|+
T Consensus 300 ~~~~~~~t~~-e~~ll~~~~~~le~a~~~~~s~LSl~~---~~~~~~~e~~G~~~~i~GG~~~Li~aLA~~L-----~Ir 370 (738)
T PLN02529 300 QLYGVARSTE-ERQLLDWHLANLEYANAGCLSDLSAAY---WDQDDPYEMGGDHCFLAGGNWRLINALCEGV-----PIF 370 (738)
T ss_pred hhhccCCCHH-HHHHHHHHHHHhceecCCChHHhhhhH---hhhccccccCCceEEECCcHHHHHHHHHhcC-----CEE
Confidence 2222 122332222223333333332222221 1110001123456789999999999999855 599
Q ss_pred eCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHh---hcCCCChHHHHhhcCcceee-cEEEEecCCCCCCC
Q 038410 231 MSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRI---LGNQATFDETRILGAFRYVY-RDVFLHRDKNFMPQ 306 (850)
Q Consensus 231 ~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~l---l~~~~~~~~~~~l~~i~~~~-~~v~l~~d~~~~p~ 306 (850)
+|++|++|++++++|+|++ +++++.||+||+|+|+.++.+. +.++++....+++..++|.+ .++++.++.++|+.
T Consensus 371 Lnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~ 449 (738)
T PLN02529 371 YGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGE 449 (738)
T ss_pred cCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccC
Confidence 9999999999999999876 4457999999999999999843 34446677789999999998 88899999998865
Q ss_pred CCCCcee------------eeecc-c-CCCceEEEEeccc----cCCCCCC--CC---ceEEe-cCCC----CCCc-cce
Q 038410 307 NPAAWSA------------WNFVG-S-TNGKICLTYCLNV----LQNIGET--SM---PFLAT-LNPD----RTPQ-NTL 357 (850)
Q Consensus 307 ~~~~~~s------------~~~~~-~-~~~~~~~~~~~~~----l~~l~~~--~~---~~~~~-l~~~----~~~~-~~~ 357 (850)
....+.. +.+.. . +.+..++.+..+. +..+.+. .. ..+.. +++. ..|. .+.
T Consensus 450 ~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~ 529 (738)
T PLN02529 450 ELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTIC 529 (738)
T ss_pred CCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEE
Confidence 4321110 00111 1 2233333333321 1122210 00 01111 1221 1222 345
Q ss_pred eeEEe------ccCCCChHH-HHHHHHhhhhcCCCCeEEEcccc---CCCCCcchhhHHHHHHHHhccc
Q 038410 358 LKWST------GHSVPSVAA-SKASLELHLIQGKRGIWYSGVDQ---GYGFPEDGLKVGMIAAHGVLGK 416 (850)
Q Consensus 358 ~~w~~------~~p~~~~~~-~~~~~~l~~~~~~~~l~~aG~~~---g~G~~e~A~~sG~~aA~~ilg~ 416 (850)
.+|.. ++..+.++. ......+. .+..++|||||+++ ++|++|+|+.||+++|++|+..
T Consensus 530 t~W~~DP~s~GsYS~~~~g~~~~d~~~La-~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~ 597 (738)
T PLN02529 530 TRWGSDPLSYGSYSHVRVQSSGSDYDILA-ESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHV 597 (738)
T ss_pred ccCCcCCCCCCCcccCCCCCchhHHHHHh-CCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHH
Confidence 58863 112111111 11112222 11246899999966 4567799999999999999753
No 19
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.96 E-value=1.9e-28 Score=250.66 Aligned_cols=205 Identities=17% Similarity=0.266 Sum_probs=177.3
Q ss_pred CeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhhh
Q 038410 617 LDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIENV 695 (850)
Q Consensus 617 ~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~ 695 (850)
++|||||||+|.++..++++ ++++|+|+|+|+++++.++++++..|+.++++++..|+.+.+.+++||+|+++++++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999988 46899999999999999999999999999999999999766644689999999999999
Q ss_pred ChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhcCCceEEEEeeecCC
Q 038410 696 GHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRLCVEHLENIGI 775 (850)
Q Consensus 696 ~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 775 (850)
++ +..+|++++++|||||+++++++...... ....+++.. ++++..++.+.+.+ +||++.+.++++.
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----~~~~~~~~~------~~~s~~~~~~~l~~-~Gf~~~~~~~~~~ 147 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLS----AIEHEETTS------YLVTREEWAELLAR-NNLRVVEGVDASL 147 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccCc----ccccccccc------ccCCHHHHHHHHHH-CCCeEEEeEECcH
Confidence 54 79999999999999999999887532210 011122222 36789999888876 7999999999999
Q ss_pred cHHHHHHHHHHHHHhcHHHHHhccCCHHHHHHHHHHHHHHHHHhccCcceEEEEEEEecCCC
Q 038410 776 HFYQTLRCWRTNLMEKQSEILALGFNEKFIRTWEYYFDYCAAGFKSRTLGNYQIVFSRPSIV 837 (850)
Q Consensus 776 ~y~~tl~~w~~~~~~~~~~~~~~~~~~~~~r~w~~yl~~~~~~f~~~~~~~~q~~~~~~~~~ 837 (850)
||+.++ |..+|.++++++.++++|+.|.|+|.+|+.+|++ |+.|.+++.|++++|+..-
T Consensus 148 ~~~~~l--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~ 206 (224)
T smart00828 148 EIANFL--YDPGFEDNLERLYQDDLDEVTKRHFRGIANLGKL-LEKGLASYALLIVQKDEFL 206 (224)
T ss_pred hHhhhc--cChhHHHHHHHhccccchHHHHHHHhhHHHHHHH-HHhchHhhEEEEEeccccC
Confidence 999876 9999999999999878999999999999999998 9999999999999998543
No 20
>PLN02568 polyamine oxidase
Probab=99.96 E-value=5e-28 Score=274.70 Aligned_cols=291 Identities=13% Similarity=0.158 Sum_probs=189.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCC-----CeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAG-----VEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDM 75 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G-----~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~ 75 (850)
+||||||||++||+||++|++.| ++|+|||+++++||+++|.+..|+.+|.|++++.+...+.+.++++++|+..
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g~~~ 85 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGSLE 85 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhCCcc
Confidence 47999999999999999999887 8999999999999999999999999999999997655677889999999865
Q ss_pred ccccce--------eeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhh--------HHHHHHHHhhcCC
Q 038410 76 GTSDMS--------FSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFK--------DDVLSYVEELENS 139 (850)
Q Consensus 76 ~~~~~~--------~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 139 (850)
...... ..+...+|.. +..-. .......+..++....... .+...+.......
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (539)
T PLN02568 86 SDEPWECMDGFPDRPKTVAEGGFE--------VDPSI---VESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARV 154 (539)
T ss_pred ccCcceecccccccceEEccCCcC--------CCHHH---HHHHHHHHHHHHHHhhcccccccccccccccccchhccch
Confidence 432110 0011111111 10000 0000000111111110000 0000000000000
Q ss_pred CCCCCCCcHHHHHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH----------Hhhh--c-----CCC
Q 038410 140 PDIDRNETLGHFIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR----------LFQL--F-----GHP 202 (850)
Q Consensus 140 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~~--~-----~~~ 202 (850)
.....+.++++|+++. +.+ +.+.+..|...+++......++..+....+..+. .... . ..+
T Consensus 155 ~~~~~~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g 232 (539)
T PLN02568 155 CESGGGGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPG 232 (539)
T ss_pred hccCCCCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCC
Confidence 0011245889999875 333 3344555666666666555442212111111110 0000 0 123
Q ss_pred cEEEecCChHHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHH-------hhcC
Q 038410 203 QCVTVRRHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALR-------ILGN 275 (850)
Q Consensus 203 ~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~-------ll~~ 275 (850)
..+.++||+++|+++|++.+. +.+|++|++|++|+..+++|.|++.+|+++.||+||+|+|+..+.. .+.+
T Consensus 233 ~~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P 310 (539)
T PLN02568 233 EEITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSP 310 (539)
T ss_pred CeEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecC
Confidence 467899999999999999995 4579999999999999999999999998899999999999999885 3555
Q ss_pred CCChHHHHhhcCcceee-cEEEEecCCCCCCC
Q 038410 276 QATFDETRILGAFRYVY-RDVFLHRDKNFMPQ 306 (850)
Q Consensus 276 ~~~~~~~~~l~~i~~~~-~~v~l~~d~~~~p~ 306 (850)
+++....+++..+++.. .++++.++.++|+.
T Consensus 311 ~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~ 342 (539)
T PLN02568 311 PLPDFKTDAISRLGFGVVNKLFVELSPRPDGS 342 (539)
T ss_pred CCCHHHHHHHHhcCCceeeEEEEEecCCCCCc
Confidence 56777788999999987 78899999988764
No 21
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.96 E-value=2.6e-27 Score=273.76 Aligned_cols=386 Identities=16% Similarity=0.171 Sum_probs=227.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCC----eeeecceeeccCCCchHHHHHHHHcCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDG----VDLDIGFMLFNHVEYPNMMEFLESLGVDMG 76 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G----~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~ 76 (850)
++|+|||||++||+||+.|++.|++|+|+|+++++||++.+....| +.+|.|++++++...+.+..+++++|++..
T Consensus 239 ~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~ 318 (808)
T PLN02328 239 ANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLH 318 (808)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceE
Confidence 5899999999999999999999999999999999999999998865 368999999976555567789999999876
Q ss_pred cccceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhc-
Q 038410 77 TSDMSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSR- 155 (850)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~- 155 (850)
.....+.+...+|..+....+..+ ...+..++....++... .. . .....+.|+.+++++.
T Consensus 319 ~~~~~~~~~~~dG~~~~~~~~~~v-----------~~~f~~lL~~~~klr~~----~~---~-~~~~~D~SLg~~le~~~ 379 (808)
T PLN02328 319 KVRDICPLYLPDGKAVDAEIDSKI-----------EASFNKLLDRVCKLRQA----MI---E-EVKSVDVNLGTALEAFR 379 (808)
T ss_pred ecCCCceEEeCCCcCcchhhhhhH-----------HHHHHHHHHHHHHHHHh----hh---h-cccccCcCHHHHHHHHh
Confidence 544444454455543321110000 01111122211111110 00 0 0011367888888632
Q ss_pred -----CCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHHHhhhcCCCcEEEecCChHHHHHHHHHHhhccCceEe
Q 038410 156 -----GYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRLFQLFGHPQCVTVRRHSHSQIDKVSEQLKSWGIQIR 230 (850)
Q Consensus 156 -----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~ 230 (850)
...+. ...++.+....+-......+..++ +............+....++||+++++++|++.+ .|+
T Consensus 380 ~~~~~~~~~~-e~~Ll~w~lanlE~~~gs~ls~LS---l~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~L-----~I~ 450 (808)
T PLN02328 380 HVYKVAEDPQ-ERMLLNWHLANLEYANASLMSNLS---MAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDL-----PIF 450 (808)
T ss_pred hhhccCCCHH-HHHHHHHHHHHHhccchhhHHHHH---hhhhhccccccCCCeEEEECCcHHHHHHHHHhhC-----Ccc
Confidence 11111 112222222111111111110001 0000000000112446788999999999999987 499
Q ss_pred eCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHH--h-hcCCCChHHHHhhcCcceee-cEEEEecCCCCCCC
Q 038410 231 MSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALR--I-LGNQATFDETRILGAFRYVY-RDVFLHRDKNFMPQ 306 (850)
Q Consensus 231 ~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~--l-l~~~~~~~~~~~l~~i~~~~-~~v~l~~d~~~~p~ 306 (850)
+|++|++|.+.+++|.| +.+|+++.||+||+|+|+.++.+ + +.++++....+++..+.|.. .++++.++.++|+.
T Consensus 451 ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~ 529 (808)
T PLN02328 451 YERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGG 529 (808)
T ss_pred cCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccC
Confidence 99999999999988887 55787899999999999999874 2 34446777889999999988 88889999988865
Q ss_pred CCCCcee--------------eeecccCCCceEEEEecc-c----cCCCCCC--CCceE---E-ecCC----CCCCc-cc
Q 038410 307 NPAAWSA--------------WNFVGSTNGKICLTYCLN-V----LQNIGET--SMPFL---A-TLNP----DRTPQ-NT 356 (850)
Q Consensus 307 ~~~~~~s--------------~~~~~~~~~~~~~~~~~~-~----l~~l~~~--~~~~~---~-~l~~----~~~~~-~~ 356 (850)
....+.. +++.. ..+..++..++. . +..+.+. ...++ . .+++ ...|. ..
T Consensus 530 ~~d~fG~l~~d~s~rG~~~lf~s~s~-~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~ 608 (808)
T PLN02328 530 EIDTFGHLTEDPSMRGEFFLFYSYSS-VSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAV 608 (808)
T ss_pred CCCceEEEeecCCCCceEEEEecCCC-CCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEE
Confidence 4321111 11111 123344444433 1 1112111 01111 1 1222 11233 35
Q ss_pred eeeEEe------ccCCCChHHH-HHHHHhhhhcCCCCeEEEcccc---CCCCCcchhhHHHHHHHHhccc
Q 038410 357 LLKWST------GHSVPSVAAS-KASLELHLIQGKRGIWYSGVDQ---GYGFPEDGLKVGMIAAHGVLGK 416 (850)
Q Consensus 357 ~~~w~~------~~p~~~~~~~-~~~~~l~~~~~~~~l~~aG~~~---g~G~~e~A~~sG~~aA~~ilg~ 416 (850)
..+|.. ++..+.++.. ...+.+.+..+.++|||||+++ ++|++++|+.||+++|++|+..
T Consensus 609 vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~ 678 (808)
T PLN02328 609 CTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRV 678 (808)
T ss_pred EecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHH
Confidence 568863 2222223321 1222333211246899999965 4567899999999999999764
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.96 E-value=3.8e-27 Score=253.85 Aligned_cols=272 Identities=19% Similarity=0.230 Sum_probs=208.0
Q ss_pred CchHHHHHhhhhccCCChHHHHHhcCCCcceeecccCCC--CCCHHHHHHHHHHHHHHHcCC-----CCCCeEEEEccCc
Q 038410 554 NTLAQARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSE--YEDLDVAQMRKVSLLIEKARV-----NKGLDVLEIGCGW 626 (850)
Q Consensus 554 ~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~--~~~l~~aq~~~~~~~~~~l~~-----~~~~~vLDiGcG~ 626 (850)
.+....+++|+.|||..+++|+.++++.|+ ++||..+ ..++.+||.++++.+++.+++ +++.+|||||||+
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h--~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~ 129 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMH--HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGI 129 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcce--eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCC
Confidence 355678889999999999999999998875 6888764 678999999999999999988 7889999999999
Q ss_pred cHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecchhhhChhhHHHHHH
Q 038410 627 GTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFG 705 (850)
Q Consensus 627 G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~ 705 (850)
|.++..++++.+++|+|||+|+.|++.|++++++.++.++++++++|+.+++ ++++||+|++.++++|+++ ...+++
T Consensus 130 G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d--~~~~l~ 207 (340)
T PLN02244 130 GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPD--KRKFVQ 207 (340)
T ss_pred CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCC--HHHHHH
Confidence 9999999998789999999999999999999999999889999999999988 6789999999999999964 689999
Q ss_pred HHHhccccCeEEEEEEecCCCCcCCC--CcCc-----cccccccccCCCCCCCHHHHHHHHhcCCceEEEEeeecCCcHH
Q 038410 706 CCESLLAEHGLLLLQFSSVPDQCYDG--HRLS-----PGFITEYVFPGGCLPSLNRITSAMTSSSRLCVEHLENIGIHFY 778 (850)
Q Consensus 706 ~~~r~LkpgG~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~ 778 (850)
+++|+|||||++++.++......... .... ..+...|.+|. +.+..++.+.+++ +||+.+.++++..+..
T Consensus 208 e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~--~~s~~~~~~~l~~-aGf~~v~~~d~s~~v~ 284 (340)
T PLN02244 208 ELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPA--WCSTSDYVKLAES-LGLQDIKTEDWSEHVA 284 (340)
T ss_pred HHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHH-CCCCeeEeeeCcHHHH
Confidence 99999999999999887643321111 0000 01122333342 3478888877775 7999999998876554
Q ss_pred HHHHHHHHHHHhcHHHHHhccCCHHHHHHHHHHH--HHHHHHhccCcceEEEEEEEecC
Q 038410 779 QTLRCWRTNLMEKQSEILALGFNEKFIRTWEYYF--DYCAAGFKSRTLGNYQIVFSRPS 835 (850)
Q Consensus 779 ~tl~~w~~~~~~~~~~~~~~~~~~~~~r~w~~yl--~~~~~~f~~~~~~~~q~~~~~~~ 835 (850)
+......+... .+.-+... ....| ..|+--| .....+|+.|.+...-|+++||.
T Consensus 285 ~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~~~~kp~ 340 (340)
T PLN02244 285 PFWPAVIKSAL-TLKGLFGL-LTSGW-ATIRGALVMPLMIKGFKKGLIKFAVITCRKPL 340 (340)
T ss_pred HHHHHHHHHhc-CHHHHHHH-HHHHH-HHHhhhhHHHHHHHHHhcCCceeeEEEEeCCC
Confidence 44332221111 11112111 11222 2244332 35678999999999999999983
No 23
>PLN03000 amine oxidase
Probab=99.95 E-value=1.3e-26 Score=267.12 Aligned_cols=384 Identities=15% Similarity=0.135 Sum_probs=224.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeC----CeeeecceeeccCCCchHHHHHHHHcCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID----GVDLDIGFMLFNHVEYPNMMEFLESLGVDMG 76 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~----G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~ 76 (850)
++|+|||||++||+||+.|++.|++|+|+|+++++||++.|.+.. |+.+|+|++++.......+..+++++|++..
T Consensus 185 ~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~ 264 (881)
T PLN03000 185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLY 264 (881)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCcee
Confidence 489999999999999999999999999999999999999999874 5789999999976555556688999999865
Q ss_pred cccceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhc-
Q 038410 77 TSDMSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSR- 155 (850)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~- 155 (850)
.......++..+|+..+... .. .....+...+....++. .... ....+.++.++++..
T Consensus 265 ~~~~~~~ly~~~Gk~v~~~~--------~~---~ve~~fn~lLd~~~~lr----~l~~------~~~~D~SLg~aLe~~~ 323 (881)
T PLN03000 265 KVRDKCPLYRVDGKPVDPDV--------DL---KVEVAFNQLLDKASKLR----QLMG------DVSMDVSLGAALETFR 323 (881)
T ss_pred ecCCCCeEEEeCCcCCchhh--------hh---hHHHHHHHHHHHHHHHH----HHhc------ccCcCCcHHHHHHHHH
Confidence 54333334444444321100 00 00001111111111110 0000 111355665544311
Q ss_pred -----CCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHHH-hhhcCCCcEEEecCChHHHHHHHHHHhhccCceE
Q 038410 156 -----GYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRL-FQLFGHPQCVTVRRHSHSQIDKVSEQLKSWGIQI 229 (850)
Q Consensus 156 -----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i 229 (850)
.+.... ..++.+....+.......+ +... +.++.. ......+..+.++||+++++++|++.+ .|
T Consensus 324 ~~~g~~~t~e~-~~Ll~w~lanLE~~~as~l---s~LS-l~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~L-----~I 393 (881)
T PLN03000 324 QVSGNDVATEE-MGLFNWHLANLEYANAGLV---SKLS-LAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENV-----PI 393 (881)
T ss_pred HHHcccCCHHH-HHHHHHHHHHHhcccccCH---HHHH-HHHhhhcccccCCCceEEeCCCHHHHHHHHHhhC-----Cc
Confidence 122211 1111222211111111111 1001 111110 001123456778999999999999987 49
Q ss_pred eeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHH---hhcCCCChHHHHhhcCcceee-cEEEEecCCCCCC
Q 038410 230 RMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALR---ILGNQATFDETRILGAFRYVY-RDVFLHRDKNFMP 305 (850)
Q Consensus 230 ~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~---ll~~~~~~~~~~~l~~i~~~~-~~v~l~~d~~~~p 305 (850)
++|++|++|++.+++|.|++.+ +++.||+||+|+|+.+++. .+.++++....+++..++|.. .++++.++..+|+
T Consensus 394 ~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~ 472 (881)
T PLN03000 394 LYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWS 472 (881)
T ss_pred ccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCcccc
Confidence 9999999999999999998764 4799999999999999883 234446777889999999998 8889999999887
Q ss_pred CCCCCcee-----------eee-cccC-CCceEEEEecc-c----cCCCCCC-----CCceEEe-cCCC----CCCcc-c
Q 038410 306 QNPAAWSA-----------WNF-VGST-NGKICLTYCLN-V----LQNIGET-----SMPFLAT-LNPD----RTPQN-T 356 (850)
Q Consensus 306 ~~~~~~~s-----------~~~-~~~~-~~~~~~~~~~~-~----l~~l~~~-----~~~~~~~-l~~~----~~~~~-~ 356 (850)
.+...+.. +.+ ...+ .+..++..++. . +..+.+. ..+.+.. +++. ..|.. +
T Consensus 473 ~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~i 552 (881)
T PLN03000 473 TDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTV 552 (881)
T ss_pred CCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEE
Confidence 65321111 111 1112 33445544443 1 1222211 0011111 2211 12222 4
Q ss_pred eeeEEe------ccCCCChHHH-HHHHHhhhhcCCCCeEEEcccc---CCCCCcchhhHHHHHHHHhccc
Q 038410 357 LLKWST------GHSVPSVAAS-KASLELHLIQGKRGIWYSGVDQ---GYGFPEDGLKVGMIAAHGVLGK 416 (850)
Q Consensus 357 ~~~w~~------~~p~~~~~~~-~~~~~l~~~~~~~~l~~aG~~~---g~G~~e~A~~sG~~aA~~ilg~ 416 (850)
..+|.. ++..+.++.. .....+.+.-+.++|||||+.+ .+|++++|+.||+++|++|+..
T Consensus 553 vtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~ 622 (881)
T PLN03000 553 CTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQS 622 (881)
T ss_pred EccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHH
Confidence 557843 3333333322 2223333211245899999955 4577899999999999999754
No 24
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.95 E-value=1.3e-26 Score=261.83 Aligned_cols=381 Identities=19% Similarity=0.221 Sum_probs=237.5
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCe--eeecceeeccCCCchHHHHHHHHcCCCccccc--ceeeEEecCC
Q 038410 14 VSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGV--DLDIGFMLFNHVEYPNMMEFLESLGVDMGTSD--MSFSVSLDKG 89 (850)
Q Consensus 14 saA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~--~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~g 89 (850)
+||++|+++|++|+|||+++++||++.|...+|+ .+|.|+|++. ..++++.++++++|++..... ....+...++
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~-~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~ 79 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLL-GAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGG 79 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEE-cccHHHHHHHHHhCCchhhhcccCCcceecCCC
Confidence 5899999999999999999999999999998865 4999999994 678999999999999865431 1122222222
Q ss_pred CccccCCCCCCchhhHHhh-----hccCh-HHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhcCCCHHHHH
Q 038410 90 QGYEWGTRNGLSSLFAQKK-----NVLNP-YFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSRGYSELFLK 163 (850)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~ 163 (850)
....+.. ..+...+.... ..+.. ...+....+. .... ......++.|+.+|+++.++++.+.+
T Consensus 80 ~~~~~~~-~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~---~~~~~~~~~s~~~~l~~~~~~~~~~~ 148 (419)
T TIGR03467 80 RLSRLRL-SRLPAPLHLARGLLRAPGLSWADKLALARALL-------ALRR---TRFRALDDTTVGDWLQAAGQSERLIE 148 (419)
T ss_pred CceeecC-CCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHH-------HHHh---cCccccCCCCHHHHHHHcCCCHHHHH
Confidence 2111111 01111110000 01111 1111111111 1111 00112357899999999888999999
Q ss_pred HHHhhhhcccccCCcchhccCCHHHHHHHHH--HhhhcCCCcEEEecCChHHHH-HHHHHHhhccCceEeeCCceEEEEe
Q 038410 164 AYLIPICSSVWSCPSDGAMRFSAFSVLSFCR--LFQLFGHPQCVTVRRHSHSQI-DKVSEQLKSWGIQIRMSCEVYSVFP 240 (850)
Q Consensus 164 ~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~gG~~~l~-~~L~~~l~~~G~~i~~~~~V~~I~~ 240 (850)
.++.|++.++|+.+++++ |+..+...+. .........+.+++||++.++ ++|++.+++.|++|++|++|++|+.
T Consensus 149 ~~~~p~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~ 225 (419)
T TIGR03467 149 RLWEPLLLSALNTPPERA---SAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEA 225 (419)
T ss_pred HHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEE
Confidence 999999999999999988 5555554443 111122345788899987766 5599999888999999999999999
Q ss_pred cCCceEEEe-eCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCcceee-cEEEEecCCCCC-CCCCC----Ccee
Q 038410 241 ADEGCSIVC-VNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRYVY-RDVFLHRDKNFM-PQNPA----AWSA 313 (850)
Q Consensus 241 ~~~~v~V~~-~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~~~-~~v~l~~d~~~~-p~~~~----~~~s 313 (850)
+++++.++. .+|+++.||+||+|+|++++.++++. +...+.+..++|.+ .++++.++.+++ |.... ....
T Consensus 226 ~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 302 (419)
T TIGR03467 226 NAGGIRALVLSGGETLPADAVVLAVPPRHAASLLPG---EDLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGGLAQ 302 (419)
T ss_pred cCCcceEEEecCCccccCCEEEEcCCHHHHHHhCCC---chHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCCcee
Confidence 988866543 46778999999999999999999864 24567788889988 456788888774 32210 0111
Q ss_pred eeeccc--CCCceEEEEeccccCCCCCC-----CC---ceE-EecCCC--CCCcc-ceeeEEeccCCCChHHHHHHHHhh
Q 038410 314 WNFVGS--TNGKICLTYCLNVLQNIGET-----SM---PFL-ATLNPD--RTPQN-TLLKWSTGHSVPSVAASKASLELH 379 (850)
Q Consensus 314 ~~~~~~--~~~~~~~~~~~~~l~~l~~~-----~~---~~~-~~l~~~--~~~~~-~~~~w~~~~p~~~~~~~~~~~~l~ 379 (850)
|.+... ++....+..++.....+.+. .. +.+ ..++.. ..+.. .+.+|....+.+.++.....+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-- 380 (419)
T TIGR03467 303 WLFDRGQLAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPG-- 380 (419)
T ss_pred EEEECCcCCCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCC--
Confidence 333211 12223333433322221111 00 000 111111 11222 2346655555554443211111
Q ss_pred hhcCCCCeEEEccccCCC---CCcchhhHHHHHHHHhc
Q 038410 380 LIQGKRGIWYSGVDQGYG---FPEDGLKVGMIAAHGVL 414 (850)
Q Consensus 380 ~~~~~~~l~~aG~~~g~G---~~e~A~~sG~~aA~~il 414 (850)
..++.++|||||+|+..| .+|+|+.||+++|++|+
T Consensus 381 ~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 381 ARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred CCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 135678999999988665 44899999999999985
No 25
>PLN02676 polyamine oxidase
Probab=99.95 E-value=1.7e-26 Score=260.74 Aligned_cols=387 Identities=16% Similarity=0.233 Sum_probs=227.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEecCCCCCCcceEEeeCCeeeecceeeccC---CCchHHHHHHHHcCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGV-EVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNH---VEYPNMMEFLESLGVDMG 76 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~---~~~~~~~~l~~~lgl~~~ 76 (850)
.||+|||||++||+||++|+++|+ +|+|||+++++||++.+....|+.+|.|++++.. ...+.+.++++++|+...
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~~~ 106 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLRTF 106 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCcee
Confidence 389999999999999999999998 6999999999999999998899999999999953 345678899999999865
Q ss_pred cccce---eeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcH--HHH
Q 038410 77 TSDMS---FSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETL--GHF 151 (850)
Q Consensus 77 ~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~ 151 (850)
..... ..+...+|+.+. . .. ...+...+..+.++..... ... . +...++.++ ..+
T Consensus 107 ~~~~~~~~~~~~~~~g~~~~--------~---~~----~~~~~~~~~~~~~~~~~~~---~~~-~-~~~~~~~s~~~~~~ 166 (487)
T PLN02676 107 YSDFDNLSSNIYKQDGGLYP--------K---KV----VQKSMKVADASDEFGENLS---ISL-S-AKKAVDISILTAQR 166 (487)
T ss_pred ecCccccceeEECCCCCCCC--------H---HH----HHHHHHHHHHHHHHHHHHH---Hhh-c-ccCCCCccHHHHHH
Confidence 43221 111112222220 0 00 0111111222222111111 100 0 111234555 333
Q ss_pred HhhcC-CC-HHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHHHhhhcCCCcEEEe--cCChHHHHHHHHHHhhcc--
Q 038410 152 IKSRG-YS-ELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRLFQLFGHPQCVTV--RRHSHSQIDKVSEQLKSW-- 225 (850)
Q Consensus 152 l~~~~-~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~gG~~~l~~~L~~~l~~~-- 225 (850)
+.... .. ......++. ....++.+++++ |...++.. ......+... +.+ ++|++++++.|++.+.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---S~~~~~~~-~~~~~~g~~~-~~~~~~~G~~~l~~~La~~~~~~~~ 239 (487)
T PLN02676 167 LFGQVPKTPLEMVIDYYN--YDYEFAEPPRVT---SLKNTEPN-PTFVDFGEDE-YFVADPRGYESLVYYLAEQFLSTKS 239 (487)
T ss_pred HHhhCCCCHHHHHHHHHh--ccceeccCcccc---chhhcCcc-cccccCCCce-EEeecCCCHHHHHHHHHhhcccccc
Confidence 43321 11 111111111 012245555555 32221110 0111122222 333 689999999999987543
Q ss_pred ----CceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHH--h-hcCCCChHHHHhhcCcceee-cEEEE
Q 038410 226 ----GIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALR--I-LGNQATFDETRILGAFRYVY-RDVFL 297 (850)
Q Consensus 226 ----G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~--l-l~~~~~~~~~~~l~~i~~~~-~~v~l 297 (850)
+.+|++|++|++|+.++++|.|++.+|++++||+||+|+|+..+.. + +.++++....+++..+++.. .++++
T Consensus 240 ~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l 319 (487)
T PLN02676 240 GKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFL 319 (487)
T ss_pred cccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEE
Confidence 2579999999999999999999999998899999999999998875 3 34445666778889999987 88999
Q ss_pred ecCCCCCCCCCC-Cc-----------eeee-eccc-CCCceEEEEeccc----cCCCCCC-----CCceEE-ecCCC-CC
Q 038410 298 HRDKNFMPQNPA-AW-----------SAWN-FVGS-TNGKICLTYCLNV----LQNIGET-----SMPFLA-TLNPD-RT 352 (850)
Q Consensus 298 ~~d~~~~p~~~~-~~-----------~s~~-~~~~-~~~~~~~~~~~~~----l~~l~~~-----~~~~~~-~l~~~-~~ 352 (850)
.++.++|+.+.. .+ ..|. +... +...+++.+..+. +..+.+. ..+.+. .+++. ..
T Consensus 320 ~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~~ 399 (487)
T PLN02676 320 KFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIPE 399 (487)
T ss_pred EeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999976321 11 1111 1111 2233443333321 1222211 001111 11211 12
Q ss_pred Ccc-ceeeEEe------ccCCCChHHHHH-HHHhhhhcCCCCeEEEcccc---CCCCCcchhhHHHHHHHHhccc
Q 038410 353 PQN-TLLKWST------GHSVPSVAASKA-SLELHLIQGKRGIWYSGVDQ---GYGFPEDGLKVGMIAAHGVLGK 416 (850)
Q Consensus 353 ~~~-~~~~w~~------~~p~~~~~~~~~-~~~l~~~~~~~~l~~aG~~~---g~G~~e~A~~sG~~aA~~ilg~ 416 (850)
|.. ....|.. ++..+.++.... .+.+ .+|.++|||||+.+ ..|++|+|+.||+++|++|+..
T Consensus 400 p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L--~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~ 472 (487)
T PLN02676 400 ATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQI--RAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLEC 472 (487)
T ss_pred cceEEecccCCCCCCCcccCCCCCCCChhHHHHH--hCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHH
Confidence 222 3346743 233333333222 1222 24668999999955 4788899999999999999754
No 26
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.95 E-value=2e-25 Score=255.89 Aligned_cols=295 Identities=20% Similarity=0.231 Sum_probs=179.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCch-HHHHHHHHcCCCccc--
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYP-NMMEFLESLGVDMGT-- 77 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~-~~~~l~~~lgl~~~~-- 77 (850)
+||||||||++||+||..|+++|++|+|||+++++||+++|++..|+.+|.|++++.....+ ...++++++|+....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 69999999999999999999999999999999999999999999999999999998532223 345888999987431
Q ss_pred -ccceeeEEecCCC-ccc-cCCCCCCchhhHHhhhccChHHHHHHHHHHhhh---------------HHHHHHHHhhcCC
Q 038410 78 -SDMSFSVSLDKGQ-GYE-WGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFK---------------DDVLSYVEELENS 139 (850)
Q Consensus 78 -~~~~~~~~~~~g~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 139 (850)
.+....+.+.+|. .+. +.+...+...+...... ...++..+.+..... .............
T Consensus 82 ~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (492)
T TIGR02733 82 ILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPG-SERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPD 160 (492)
T ss_pred cCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChh
Confidence 2222344445552 222 22211111101100000 011222222111100 0000000000000
Q ss_pred ---CCCCCCCcHHHHHhhcC-CCHHHHHHHHhhhhccccc-CCcchhccCCHHHHHHHHHHhhhcCCCcEEEecCChHHH
Q 038410 140 ---PDIDRNETLGHFIKSRG-YSELFLKAYLIPICSSVWS-CPSDGAMRFSAFSVLSFCRLFQLFGHPQCVTVRRHSHSQ 214 (850)
Q Consensus 140 ---~~~~~~~s~~~~l~~~~-~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~gG~~~l 214 (850)
.......++.+|+++.+ +.....+.++...+ ..+. .++++. ++...+.++... ....+.++++||+++|
T Consensus 161 ~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~-~~~~~~~~~~~---~~~~~~~~~~~~--~~~~G~~~~~GG~~~l 234 (492)
T TIGR02733 161 TLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQL-KLYSQEDADET---AALYGATVLQMA--QAPHGLWHLHGSMQTL 234 (492)
T ss_pred hhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHH-hhhccCChhhh---hHHHHHHHhhcc--ccCCCceeecCcHHHH
Confidence 00012578889998764 33333344444332 2233 334344 222221111111 1123456799999999
Q ss_pred HHHHHHHhhccCceEeeCCceEEEEecCCce-EEEeeCC-----cEEeCCEEEEecChHHHHHhhcC-CCChHHHHhhcC
Q 038410 215 IDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCVNG-----SQEFYNGCVMAVHAPDALRILGN-QATFDETRILGA 287 (850)
Q Consensus 215 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G-----~~i~ad~VV~A~p~~~~~~ll~~-~~~~~~~~~l~~ 287 (850)
+++|++.++++|++|++|++|++|..+++++ .|.+.+| +++.||+||+|+|+..+.++++. ..++...+.+..
T Consensus 235 ~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~ 314 (492)
T TIGR02733 235 SDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKK 314 (492)
T ss_pred HHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhc
Confidence 9999999999999999999999999987763 4444444 57899999999999999888864 334455667778
Q ss_pred cceeec--EEEEecCCC
Q 038410 288 FRYVYR--DVFLHRDKN 302 (850)
Q Consensus 288 i~~~~~--~v~l~~d~~ 302 (850)
+++.+. .+++.++..
T Consensus 315 ~~~s~~~~~v~l~~~~~ 331 (492)
T TIGR02733 315 LPEPSGAFVFYLGVKRA 331 (492)
T ss_pred CCCCCceEEEEEeeccc
Confidence 887774 345666653
No 27
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.94 E-value=5e-26 Score=239.29 Aligned_cols=390 Identities=15% Similarity=0.132 Sum_probs=223.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCcccccc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTSDM 80 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~~ 80 (850)
.||||||||+|||+||++|.++|++|+|||+++++|||+.+.+..|.+.|.|.+++++ .++.++.+.+++|++..+...
T Consensus 8 ~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p-~~~~~l~~~k~~gv~~~~fi~ 86 (450)
T COG1231 8 ADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-THDALLAYAKEFGVPLEPFIR 86 (450)
T ss_pred CcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc-cchhhhhhHHhcCCCCCceec
Confidence 3899999999999999999999999999999999999999999988999999999976 788888999999999876433
Q ss_pred eeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHH---HHHhhcCCCCCCCCCcHHHHHhhcCC
Q 038410 81 SFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLS---YVEELENSPDIDRNETLGHFIKSRGY 157 (850)
Q Consensus 81 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~l~~~~~ 157 (850)
.-. ....|....... +... .......-.....+...+.. ............+.+++.+| . . .
T Consensus 87 ~g~------~~~~~~~~~~~~---p~~~---~~~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~-~-~ 151 (450)
T COG1231 87 DGD------NVIGYVGSSKST---PKRS---LTAAADVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAW-K-T-S 151 (450)
T ss_pred cCc------cccccccccccc---chhc---cchhhhhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-h-h-c
Confidence 100 001111100000 0000 00000000000000000000 00000000000124455555 1 0 0
Q ss_pred CHHHHHHHHhhh-hccccc-CCcchhccCCHHHHHHHHH----HhhhcCCCcEEEecCChHHHHHHHHHHhhccCceEee
Q 038410 158 SELFLKAYLIPI-CSSVWS-CPSDGAMRFSAFSVLSFCR----LFQLFGHPQCVTVRRHSHSQIDKVSEQLKSWGIQIRM 231 (850)
Q Consensus 158 ~~~~~~~~~~p~-~~~~~~-~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~ 231 (850)
+ .+.+-.+. ....++ .+..+.+.......+.... ..........+.+.|||+.+++++++.+ |..|++
T Consensus 152 ~---~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql---~~~I~~ 225 (450)
T COG1231 152 S---LRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQL---GTRILL 225 (450)
T ss_pred c---ccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHh---hceEEe
Confidence 0 01111111 111122 2222222222222222222 1111223344555599999999999999 789999
Q ss_pred CCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHhhcC-CCChHHHHhhcCcceee-cEEEEecCCCCCCCCCC
Q 038410 232 SCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRILGN-QATFDETRILGAFRYVY-RDVFLHRDKNFMPQNPA 309 (850)
Q Consensus 232 ~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~-~~~~~~~~~l~~i~~~~-~~v~l~~d~~~~p~~~~ 309 (850)
+++|.+|.+.+++|+|++.+..+..+|.||||+|+.++.++--. ..+++.++++..++|.+ .++.+.++.+||....
T Consensus 226 ~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~- 304 (450)
T COG1231 226 NEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAG- 304 (450)
T ss_pred cCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcc-
Confidence 99999999999999999999456999999999999999887544 36777788888999998 7888999999986544
Q ss_pred Cceeeee----------ccc--CCCc-eEEEEec-c----ccCCCCCC--CCceEE---ecCC-C--CCCcc-ceeeEEe
Q 038410 310 AWSAWNF----------VGS--TNGK-ICLTYCL-N----VLQNIGET--SMPFLA---TLNP-D--RTPQN-TLLKWST 362 (850)
Q Consensus 310 ~~~s~~~----------~~~--~~~~-~~~~~~~-~----~l~~l~~~--~~~~~~---~l~~-~--~~~~~-~~~~w~~ 362 (850)
..+.+.+ +.. .++. +++.++. + .++.+.+. ...++. .+.+ . .+.+. ...+|..
T Consensus 305 ~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~ 384 (450)
T COG1231 305 ILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSK 384 (450)
T ss_pred cCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccceeeeccc
Confidence 2222222 111 1233 3333232 2 12222221 000111 1111 1 11122 3335543
Q ss_pred -----c-cCCCChHHHHH-HHHhhhhcCCCCeEEEc-ccc--CCCCCcchhhHHHHHHHHhcc
Q 038410 363 -----G-HSVPSVAASKA-SLELHLIQGKRGIWYSG-VDQ--GYGFPEDGLKVGMIAAHGVLG 415 (850)
Q Consensus 363 -----~-~p~~~~~~~~~-~~~l~~~~~~~~l~~aG-~~~--g~G~~e~A~~sG~~aA~~ilg 415 (850)
. ++.+.++.... -+.+ ..+.++|+||| ++. -.|++|+|+.||++||.+|..
T Consensus 385 dpwt~G~~aa~~~g~~~~~~~~l--~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~ 445 (450)
T COG1231 385 DPWTLGGTAAYPPGQRTKLYPTL--PAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHA 445 (450)
T ss_pred CCcCCccccccCCcccccccccc--cCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHH
Confidence 1 22222222111 0111 34678999999 544 567789999999999999854
No 28
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.94 E-value=1.2e-24 Score=250.39 Aligned_cols=285 Identities=16% Similarity=0.132 Sum_probs=176.3
Q ss_pred EEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCcc------
Q 038410 3 VAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMG------ 76 (850)
Q Consensus 3 V~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~------ 76 (850)
|||||||++||+||.+|+++|++|+|||+++++||+++|.+.+|+.+|.|++++.. ...+.++++++|++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~--~~~~~~l~~~lg~~l~~~l~~~ 78 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM--PEALEELFALAGRDLADYVELV 78 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc--ccHHHHHHHHcCCChhheEEEE
Confidence 79999999999999999999999999999999999999999999999999999842 2345588898885431
Q ss_pred cccceeeEEecCCCccccCCCCCCchhhHHhhhc---cChHHHHHHHHHHhhhHHH-HHHH-----------Hh-hcCCC
Q 038410 77 TSDMSFSVSLDKGQGYEWGTRNGLSSLFAQKKNV---LNPYFWQMLREMMKFKDDV-LSYV-----------EE-LENSP 140 (850)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~-----------~~-~~~~~ 140 (850)
..+..+.+.+.+|+.+.+.. ............ ....+.+++....++.... ...+ .. .....
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (502)
T TIGR02734 79 PLDPFYRLCWEDGSQLDVDN--DQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLL 156 (502)
T ss_pred ECCCceEEECCCCCEEEecC--CHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhh
Confidence 12223344445555544432 111111111111 1111112222211111100 0000 00 00000
Q ss_pred CCCCCCcHHHHHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHHHhhhcCCCcEEEecCChHHHHHHHHH
Q 038410 141 DIDRNETLGHFIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRLFQLFGHPQCVTVRRHSHSQIDKVSE 220 (850)
Q Consensus 141 ~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~ 220 (850)
......++.+|+++...++.+ +.++. .....++.++.+. ++... .+... . .....+++.||++.++++|++
T Consensus 157 ~~~~~~s~~~~~~~~~~~~~l-~~~l~-~~~~~~g~~p~~~---~~~~~--l~~~~-~-~~~g~~~~~gG~~~l~~al~~ 227 (502)
T TIGR02734 157 ALLAWRSLYSKVARFFSDERL-RQAFS-FHALFLGGNPFRT---PSIYA--LISAL-E-REWGVWFPRGGTGALVAAMAK 227 (502)
T ss_pred hccCcCCHHHHHHhhcCCHHH-HHHhc-ccceeeccCcccc---hHHHH--HHHHH-H-hhceEEEcCCCHHHHHHHHHH
Confidence 111367888898877344443 43433 2334556666554 32211 11111 1 124566899999999999999
Q ss_pred HhhccCceEeeCCceEEEEecCCc-eEEEeeCCcEEeCCEEEEecChHHHH-HhhcCCCCh-HHHHhhcCcceee--cEE
Q 038410 221 QLKSWGIQIRMSCEVYSVFPADEG-CSIVCVNGSQEFYNGCVMAVHAPDAL-RILGNQATF-DETRILGAFRYVY--RDV 295 (850)
Q Consensus 221 ~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VV~A~p~~~~~-~ll~~~~~~-~~~~~l~~i~~~~--~~v 295 (850)
.++++|++|+++++|++|..++++ +.|++.+|+++.||+||+|+++..+. .+++....+ ...+.+..+++.. ..+
T Consensus 228 ~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~ 307 (502)
T TIGR02734 228 LAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVL 307 (502)
T ss_pred HHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEE
Confidence 999999999999999999988776 57888899889999999999987665 455443322 2234445555554 334
Q ss_pred EEecC
Q 038410 296 FLHRD 300 (850)
Q Consensus 296 ~l~~d 300 (850)
++..+
T Consensus 308 ~lgl~ 312 (502)
T TIGR02734 308 YFGLL 312 (502)
T ss_pred EEeec
Confidence 55555
No 29
>PLN02976 amine oxidase
Probab=99.93 E-value=6.9e-25 Score=257.94 Aligned_cols=379 Identities=15% Similarity=0.190 Sum_probs=215.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEee-CCeeeecceeeccCCCc-------hHHH-HHHHHc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI-DGVDLDIGFMLFNHVEY-------PNMM-EFLESL 71 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-~G~~~d~G~~~~~~~~~-------~~~~-~l~~~l 71 (850)
++|+|||||++||+||+.|+++|++|+|||+++++||++.+... .|+.+|.|++++.+... ++.. .+++++
T Consensus 694 ~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ql 773 (1713)
T PLN02976 694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQL 773 (1713)
T ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHhc
Confidence 58999999999999999999999999999999999999999875 58999999999854221 2333 468899
Q ss_pred CCCcccccceeeE-EecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHH
Q 038410 72 GVDMGTSDMSFSV-SLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGH 150 (850)
Q Consensus 72 gl~~~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 150 (850)
|+........... ...+|+.++- .. . ..+...+..++ ........ .......+.++++
T Consensus 774 Gl~l~~~~~~~~~yd~~~G~~V~~--------e~---~----~~v~~~fn~ll---d~~~~~~~---~~g~~a~d~SLgd 832 (1713)
T PLN02976 774 GLELTVLNSDCPLYDVVTGEKVPA--------DL---D----EALEAEYNSLL---DDMVLLVA---QKGEHAMKMSLED 832 (1713)
T ss_pred CCccccccCCCceeEccCCcCCCH--------HH---H----HHHHHHHHHHH---HHHHHHHh---hcccCccCCCHHH
Confidence 9887554322121 1122222110 00 0 00111111111 00000000 0000112445555
Q ss_pred HHhhcCC------------------------------------CHHHH--------HHHHhhhhccc---ccCCcchhcc
Q 038410 151 FIKSRGY------------------------------------SELFL--------KAYLIPICSSV---WSCPSDGAMR 183 (850)
Q Consensus 151 ~l~~~~~------------------------------------~~~~~--------~~~~~p~~~~~---~~~~~~~~~~ 183 (850)
+|..... ..... ..++..++..+ ++.+++++
T Consensus 833 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eV-- 910 (1713)
T PLN02976 833 GLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEV-- 910 (1713)
T ss_pred HHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHh--
Confidence 5552100 00000 00000001111 12222222
Q ss_pred CCHHHHHHHHH---HhhhcCCCcEEEecCChHHHHHHHHHHhhccCceEeeCCceEEEEec----------CCceEEEee
Q 038410 184 FSAFSVLSFCR---LFQLFGHPQCVTVRRHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPA----------DEGCSIVCV 250 (850)
Q Consensus 184 ~~a~~~~~~~~---~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~----------~~~v~V~~~ 250 (850)
+.. ++. .+..+ .+..+.++||+++|+++|++.+ .|++|++|++|.+. +++|.|++.
T Consensus 911 -Sl~----~~~qd~~y~~f-gG~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTs 979 (1713)
T PLN02976 911 -SLP----YWNQDDVYGGF-GGAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTS 979 (1713)
T ss_pred -hhh----hhhcccccccC-CCceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEEC
Confidence 111 111 01112 2346678999999999999977 59999999999984 456999999
Q ss_pred CCcEEeCCEEEEecChHHHHH--h-hcCCCChHHHHhhcCcceee-cEEEEecCCCCCCCCCCC--------------ce
Q 038410 251 NGSQEFYNGCVMAVHAPDALR--I-LGNQATFDETRILGAFRYVY-RDVFLHRDKNFMPQNPAA--------------WS 312 (850)
Q Consensus 251 ~G~~i~ad~VV~A~p~~~~~~--l-l~~~~~~~~~~~l~~i~~~~-~~v~l~~d~~~~p~~~~~--------------~~ 312 (850)
+|+++.||+||+|+|+..+.. + +.++++.....++..+.|.. .++++.|+.++|+.+... |.
T Consensus 980 DGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~ 1059 (1713)
T PLN02976 980 NGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFM 1059 (1713)
T ss_pred CCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEE
Confidence 998899999999999998873 2 44556666678889999988 889999999999764221 11
Q ss_pred eeeecccCCC-ceEEEEecccc----CCCCCC-----CCceEEe-cCCC--CCCcc-ceeeEEe------ccCCCChHHH
Q 038410 313 AWNFVGSTNG-KICLTYCLNVL----QNIGET-----SMPFLAT-LNPD--RTPQN-TLLKWST------GHSVPSVAAS 372 (850)
Q Consensus 313 s~~~~~~~~~-~~~~~~~~~~l----~~l~~~-----~~~~~~~-l~~~--~~~~~-~~~~w~~------~~p~~~~~~~ 372 (850)
.|+.. .+.+ .+++.+..+.. ..+.+. ..+.+.. ++.. ..|.. ...+|.. +|..+.++..
T Consensus 1060 ~wnlr-~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~ 1138 (1713)
T PLN02976 1060 FWNVK-KTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGAS 1138 (1713)
T ss_pred eccCC-CCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCC
Confidence 12221 1223 45555444421 112211 0011111 1211 12332 4558843 2222223322
Q ss_pred H-HHHHhhhhcCCCC-eEEEcccc---CCCCCcchhhHHHHHHHHhccc
Q 038410 373 K-ASLELHLIQGKRG-IWYSGVDQ---GYGFPEDGLKVGMIAAHGVLGK 416 (850)
Q Consensus 373 ~-~~~~l~~~~~~~~-l~~aG~~~---g~G~~e~A~~sG~~aA~~ilg~ 416 (850)
. ....+. +|..+ |||||+.+ ++|++++|+.||.++|++|+..
T Consensus 1139 ~~d~d~LA--ePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~ 1185 (1713)
T PLN02976 1139 GEDYDILG--RPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDI 1185 (1713)
T ss_pred chHHHHHh--CCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 1 122222 34444 99999955 5678899999999999999743
No 30
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.93 E-value=5.6e-25 Score=230.59 Aligned_cols=274 Identities=14% Similarity=0.226 Sum_probs=176.6
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcC-CCccccc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAG-VEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLG-VDMGTSD 79 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G-~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lg-l~~~~~~ 79 (850)
+|||||||+|||+||.+|.+.| .+|+|||+++|+|||++|....+..+|+|++|+++...+.+.++.++.| +......
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~~~~t 102 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKLLEVT 102 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCccceeccC
Confidence 6999999999999999999776 5999999999999999999998779999999998768888999999998 2221110
Q ss_pred ----ceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhc
Q 038410 80 ----MSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSR 155 (850)
Q Consensus 80 ----~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 155 (850)
........+|..+ .......+.++... ...... ...-..+..|+++|+...
T Consensus 103 g~~~~~~~~~~~~g~~V-------------------~~~~~~~~~~~~~~---~~~~~r---~~~~~~~~~SvG~~ln~~ 157 (498)
T KOG0685|consen 103 GPAYVDNFHTRSNGEVV-------------------PEELLDELNEITVT---LSDKLR---EAEIAHDEGSVGEYLNSE 157 (498)
T ss_pred CccccceeEEEecCccC-------------------cHHHHHHHHHHHHh---hhhhcc---cccccCccccHHHHHHHH
Confidence 0011111111111 11111112222110 000000 000012456777777642
Q ss_pred --------CC---CHHHHHHHHhhhh---cccccC-CcchhccCCHHHHHHHHHHhhhcCC-CcEEEecCChHHHHHHHH
Q 038410 156 --------GY---SELFLKAYLIPIC---SSVWSC-PSDGAMRFSAFSVLSFCRLFQLFGH-PQCVTVRRHSHSQIDKVS 219 (850)
Q Consensus 156 --------~~---~~~~~~~~~~p~~---~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~gG~~~l~~~L~ 219 (850)
.. .+.+...++.-+. ..+.++ +.+++ +...+.+|.. ..+ ......+.|...+.+-|.
T Consensus 158 ~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~ev---s~~~~~ey~~----~~ge~~~~~~~kGy~~iL~~l~ 230 (498)
T KOG0685|consen 158 FWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEV---SLRALLEYTE----CPGEELLIWNKKGYKRILKLLM 230 (498)
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhh---hhhhccceee----cCchhhheechhHHHHHHHHHh
Confidence 00 1111222222211 122222 11111 1111111111 111 134456678889999888
Q ss_pred HHhhccC------ceEeeCCceEEEEecC-CceEEEeeCCcEEeCCEEEEecChHHHHH----hhcCCCChHHHHhhcCc
Q 038410 220 EQLKSWG------IQIRMSCEVYSVFPAD-EGCSIVCVNGSQEFYNGCVMAVHAPDALR----ILGNQATFDETRILGAF 288 (850)
Q Consensus 220 ~~l~~~G------~~i~~~~~V~~I~~~~-~~v~V~~~~G~~i~ad~VV~A~p~~~~~~----ll~~~~~~~~~~~l~~i 288 (850)
+.+.+.. .+++++++|.+|...+ +.|.|++.||+.+.|||||||++..++++ ++.++++....+++.++
T Consensus 231 ~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~l 310 (498)
T KOG0685|consen 231 AVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERL 310 (498)
T ss_pred ccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhc
Confidence 8776432 3456679999999986 55999999999999999999999998887 78777888889999999
Q ss_pred ceee-cEEEEecCCCCCCCC
Q 038410 289 RYVY-RDVFLHRDKNFMPQN 307 (850)
Q Consensus 289 ~~~~-~~v~l~~d~~~~p~~ 307 (850)
.+.+ .+++|.+..++||.+
T Consensus 311 gfGtv~KiFLE~E~pfwp~~ 330 (498)
T KOG0685|consen 311 GFGTVNKIFLEFEEPFWPSD 330 (498)
T ss_pred cCCccceEEEEccCCCCCCC
Confidence 9999 899999999999886
No 31
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.93 E-value=4.5e-26 Score=220.43 Aligned_cols=299 Identities=21% Similarity=0.317 Sum_probs=196.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCcccccce
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTSDMS 81 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~~~ 81 (850)
+|+|||+||+||+||+.|+.+|.+||||||+..+|||+.|.+..|..+|.|+++|. ...+.+.++++.+.-+-
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk-~~~~~F~~~Ve~~~~~g------ 75 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFK-PRDELFLRAVEALRDDG------ 75 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeec-CCchHHHHHHHHHHhCC------
Confidence 59999999999999999999999999999999999999999999999999999995 45566666666553211
Q ss_pred eeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhcCCCHHH
Q 038410 82 FSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSRGYSELF 161 (850)
Q Consensus 82 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 161 (850)
-.-.|. +..|.. .. .+ .
T Consensus 76 --------lV~~W~-----------------~~~~~~-------------------~~----~~-----------~---- 92 (331)
T COG3380 76 --------LVDVWT-----------------PAVWTF-------------------TG----DG-----------S---- 92 (331)
T ss_pred --------ceeecc-----------------cccccc-------------------cc----CC-----------C----
Confidence 100110 000000 00 00 0
Q ss_pred HHHHHhhhhcccccCCcchhccCCHHHHHHHHHHhhhcCCCcEEEecCChHHHHHHHHHHhhccCceEeeCCceEEEEec
Q 038410 162 LKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRLFQLFGHPQCVTVRRHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPA 241 (850)
Q Consensus 162 ~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~ 241 (850)
..... +.-+.-..||.+|++.|+.-| +|.++++|++|...
T Consensus 93 -------------~~~~d----------------------~~pyvg~pgmsalak~LAtdL-----~V~~~~rVt~v~~~ 132 (331)
T COG3380 93 -------------PPRGD----------------------EDPYVGEPGMSALAKFLATDL-----TVVLETRVTEVART 132 (331)
T ss_pred -------------CCCCC----------------------CCccccCcchHHHHHHHhccc-----hhhhhhhhhhheec
Confidence 00000 011344558889999888866 79999999999999
Q ss_pred CCceEEEeeCC-cEEeCCEEEEecChHHHHHhhcC---CCChHHHHhhcCcceee-cEEEEecCCCCC-C-------CCC
Q 038410 242 DEGCSIVCVNG-SQEFYNGCVMAVHAPDALRILGN---QATFDETRILGAFRYVY-RDVFLHRDKNFM-P-------QNP 308 (850)
Q Consensus 242 ~~~v~V~~~~G-~~i~ad~VV~A~p~~~~~~ll~~---~~~~~~~~~l~~i~~~~-~~v~l~~d~~~~-p-------~~~ 308 (850)
++.|++++++| ....+|.||+|.|++++..|+.. ..+...+..+..+.|.+ ..+++++..++. | ...
T Consensus 133 ~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G~~vdg~~ 212 (331)
T COG3380 133 DNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPGNFVDGHP 212 (331)
T ss_pred CCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCCCCCcccCCCe
Confidence 99999999766 46789999999999999988843 34556788899999999 555677764322 2 222
Q ss_pred CCceeeeecc---cCCCceEEEEecccc--CCCCCC-------CCceEEecCCCC--CCcc-ceeeEEeccCCCChHHHH
Q 038410 309 AAWSAWNFVG---STNGKICLTYCLNVL--QNIGET-------SMPFLATLNPDR--TPQN-TLLKWSTGHSVPSVAASK 373 (850)
Q Consensus 309 ~~~~s~~~~~---~~~~~~~~~~~~~~l--~~l~~~-------~~~~~~~l~~~~--~~~~-~~~~w~~~~p~~~~~~~~ 373 (850)
..|-+++-.. .|.+.+.+.-..... +.+... .+..++.+.... .|.. ...+|.|++|.-....+.
T Consensus 213 laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~~~~ 292 (331)
T COG3380 213 LAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVAGPP 292 (331)
T ss_pred eeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHHhhccccccccccccCCc
Confidence 3454444221 134443322111110 011111 112223333322 2333 456999999964332211
Q ss_pred HHHHhhhhcCCCCeEEEccccCCCCCcchhhHHHHHHHHhcc
Q 038410 374 ASLELHLIQGKRGIWYSGVDQGYGFPEDGLKVGMIAAHGVLG 415 (850)
Q Consensus 374 ~~~~l~~~~~~~~l~~aG~~~g~G~~e~A~~sG~~aA~~ilg 415 (850)
+. .+...+||+|||||+.|-.|+|+.||..+|+.|+.
T Consensus 293 ----L~-ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i~~ 329 (331)
T COG3380 293 ----LD-ADRELPLYACGDWCAGGRVEGAVLSGLAAADHILN 329 (331)
T ss_pred ----cc-cCCCCceeeecccccCcchhHHHhccHHHHHHHHh
Confidence 11 13456899999999889889999999999999975
No 32
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=3.8e-24 Score=238.10 Aligned_cols=382 Identities=16% Similarity=0.232 Sum_probs=216.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCee-eecceeeccCCCchHHHHHHHHcCCCccccc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVD-LDIGFMLFNHVEYPNMMEFLESLGVDMGTSD 79 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~-~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~ 79 (850)
++|||||||+||||||.+|.+.|++|+|||+++|+|||++|.+..+.. +|+|++++.+.....+.-+.+++|++.....
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~~~~~ 95 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLELYKVR 95 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcccceec
Confidence 589999999999999999999999999999999999999999997666 9999999976555577789999999987766
Q ss_pred ceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhh-----
Q 038410 80 MSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKS----- 154 (850)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~----- 154 (850)
.........+......-+......+ ...+.....+.. ............++.+.+..
T Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~~~~-----------~~l~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~ 157 (501)
T KOG0029|consen 96 DTCPLFNENGGESDKVFDDFVEQEF-----------NRLLDDASNLEQ-------RLDNEIIGISDDSFGEALEAFLSAS 157 (501)
T ss_pred ccccccccCCcccccccccchhhhh-----------HHHHHHHhhhhh-------hhhhcccccccccHHHHHHhHHHHH
Confidence 5555544433221111101110000 011111111000 00000000001111111110
Q ss_pred -----------cCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH-HhhhcCCC-cEEEecCChHHHHHHHHHH
Q 038410 155 -----------RGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR-LFQLFGHP-QCVTVRRHSHSQIDKVSEQ 221 (850)
Q Consensus 155 -----------~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~gG~~~l~~~L~~~ 221 (850)
.+.........+.. ...-.....+.+ ...+. ....++.. ......+|+..++..+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~- 227 (501)
T KOG0029|consen 158 RLMKTLLELLLEGEADKVLQWHLVN-LELTFIAHLENA--------SARLWDQDELFGGGGIHLLMKGGYEPVVNSLAE- 227 (501)
T ss_pred HHHHhhHHHhhhhhhhHHHHHHHHH-HHHHhhccHhHh--------hHHhhhhhhhcccccchhHhhCCccHHHhhcCC-
Confidence 01000000000000 000001111110 00011 00111111 235678899999988888
Q ss_pred hhccCceEeeCCceEEEEecCCc-eEEEeeCCcEEeCCEEEEecChHHHHH--h-hcCCCChHHHHhhcCcceee-cEEE
Q 038410 222 LKSWGIQIRMSCEVYSVFPADEG-CSIVCVNGSQEFYNGCVMAVHAPDALR--I-LGNQATFDETRILGAFRYVY-RDVF 296 (850)
Q Consensus 222 l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VV~A~p~~~~~~--l-l~~~~~~~~~~~l~~i~~~~-~~v~ 296 (850)
|.+|+++..|.+|.+.+++ +.|++.++..+.+|+||+|+|..++.. + +.++++....+++.++.+.. .++.
T Consensus 228 ----~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~ 303 (501)
T KOG0029|consen 228 ----GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVI 303 (501)
T ss_pred ----CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEE
Confidence 7799999999999998777 455555555599999999999999887 3 34446666789999999988 7788
Q ss_pred EecCCCCCCCCCCCcee-------------eeecccCCCceEEEEecccc----CCCCCC---------CCceEEecCCC
Q 038410 297 LHRDKNFMPQNPAAWSA-------------WNFVGSTNGKICLTYCLNVL----QNIGET---------SMPFLATLNPD 350 (850)
Q Consensus 297 l~~d~~~~p~~~~~~~s-------------~~~~~~~~~~~~~~~~~~~l----~~l~~~---------~~~~~~~l~~~ 350 (850)
+.++..+|+.+...+.. +++.........+....+.. ..+++. ++.++......
T Consensus 304 l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~ 383 (501)
T KOG0029|consen 304 LEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVP 383 (501)
T ss_pred EEeccccCCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCC
Confidence 89999999644432221 11111122333444333321 112111 22233311222
Q ss_pred CCCccceeeEEe------ccCCCChHHHHH-HHHhhhhcCCCC-eEEEcccc---CCCCCcchhhHHHHHHHHhccc
Q 038410 351 RTPQNTLLKWST------GHSVPSVAASKA-SLELHLIQGKRG-IWYSGVDQ---GYGFPEDGLKVGMIAAHGVLGK 416 (850)
Q Consensus 351 ~~~~~~~~~w~~------~~p~~~~~~~~~-~~~l~~~~~~~~-l~~aG~~~---g~G~~e~A~~sG~~aA~~ilg~ 416 (850)
.+.+..+.+|.. .++.+..+.... .+++. .+..+ +||||.++ ..|.+++|..||.++|..|+..
T Consensus 384 ~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~--~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~ 458 (501)
T KOG0029|consen 384 DPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLA--EPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDS 458 (501)
T ss_pred CccceeeeeecccccCCccccccCCCCChhHHHHHh--ccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHH
Confidence 223335568853 223222222221 23333 34445 99999966 6778899999999999998643
No 33
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.92 E-value=2.8e-25 Score=252.75 Aligned_cols=397 Identities=22% Similarity=0.280 Sum_probs=209.9
Q ss_pred hHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeC--CeeeecceeeccCCCchHHHHHHHHcCCCccccc----ceee
Q 038410 10 MSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID--GVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTSD----MSFS 83 (850)
Q Consensus 10 iaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~--G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~----~~~~ 83 (850)
||||+||++|+++|++|+|||+++++||+++|.+.+ |+.+|.|++++. ..++++..++.++|+...... ....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 79 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFF-GMYPNLLNLIDELGLELSLETFPFPQIPF 79 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEE-TTSHHHHHHHHHHTHHTTEEEEEESSEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCccccc-ccchhhHHHHHHhhhccccccccccccee
Confidence 699999999999999999999999999999999998 999999999995 466778899999987532211 1111
Q ss_pred EEecCCC-ccccCCCCCCchhhHHh-hhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhcCCCHHH
Q 038410 84 VSLDKGQ-GYEWGTRNGLSSLFAQK-KNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSRGYSELF 161 (850)
Q Consensus 84 ~~~~~g~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 161 (850)
.....+. ...+.. .......... .......................................++.+++......+.+
T Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (450)
T PF01593_consen 80 VYWPFGDGRPPWPP-SQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQSFSEIF 158 (450)
T ss_dssp EEEEEEEEEEEEEE-CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccccccccc-ccccccccchhhhhhccccccccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 1110000 001100 0000000000 000000000000110000000000000000000000123444555444344443
Q ss_pred HHHHHhhhhcccccCCcchhccCCHHHHHHHHH---H---hhhcCCCcEEEecCChHHHHHHHHHHhhccCceEeeCCce
Q 038410 162 LKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR---L---FQLFGHPQCVTVRRHSHSQIDKVSEQLKSWGIQIRMSCEV 235 (850)
Q Consensus 162 ~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~---~---~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V 235 (850)
...++.+............. ++......+. . ........+....|++..+...+++.. |++|++|++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---g~~i~l~~~V 232 (450)
T PF01593_consen 159 RESLFRPFFFGAFGFLPDES---SAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEEL---GGEIRLNTPV 232 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCTT---THHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHH---GGGEESSEEE
T ss_pred HHHHHHhhhhhhhccccchh---hhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhc---CceeecCCcc
Confidence 33233333333333322222 2221111111 1 113444556667777777766666666 6799999999
Q ss_pred EEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHH-hhcCCCChHHHHhhcCcceee-cEEEEecCCCCCCCCC-----
Q 038410 236 YSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALR-ILGNQATFDETRILGAFRYVY-RDVFLHRDKNFMPQNP----- 308 (850)
Q Consensus 236 ~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~-ll~~~~~~~~~~~l~~i~~~~-~~v~l~~d~~~~p~~~----- 308 (850)
++|+.++++|.|++.+|+++.||+||+|+|+..+.+ .+.+.++....+++..++|.+ .++++.++.++++...
T Consensus 233 ~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~ 312 (450)
T PF01593_consen 233 TRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGI 312 (450)
T ss_dssp EEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEE
T ss_pred eeccccccccccccccceEEecceeeecCchhhhhhhhhcccccccccccccccccCcceeEEEeeecccccccccccce
Confidence 999999999999999999999999999999999996 444435555678889999998 6778999998887642
Q ss_pred -----CCceeeeeccc--C--CCceEEEEecc-c----cCCCCCC-----CCceEEecCC-C--CCC-ccceeeEEe-cc
Q 038410 309 -----AAWSAWNFVGS--T--NGKICLTYCLN-V----LQNIGET-----SMPFLATLNP-D--RTP-QNTLLKWST-GH 364 (850)
Q Consensus 309 -----~~~~s~~~~~~--~--~~~~~~~~~~~-~----l~~l~~~-----~~~~~~~l~~-~--~~~-~~~~~~w~~-~~ 364 (850)
..+..+..... + .+...+..++. . +..+.+. ..+.+..+.+ . ..| .....+|.. .+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~ 392 (450)
T PF01593_consen 313 LYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPY 392 (450)
T ss_dssp EEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTT
T ss_pred ecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhccccccccccccccccccccccc
Confidence 11222111111 1 13334433332 1 2222211 0011111111 1 112 224457765 44
Q ss_pred CCCChHHHH--H-HHHhhh-hcCC-CCeEEEccccCCC---CCcchhhHHHHHHHHhc
Q 038410 365 SVPSVAASK--A-SLELHL-IQGK-RGIWYSGVDQGYG---FPEDGLKVGMIAAHGVL 414 (850)
Q Consensus 365 p~~~~~~~~--~-~~~l~~-~~~~-~~l~~aG~~~g~G---~~e~A~~sG~~aA~~il 414 (850)
+..+..... . ....+. ..+. +||||||+|+..+ .+++|+.||++||++|+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 393 PRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 433221111 1 112222 3444 6999999987533 55999999999999985
No 34
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.91 E-value=1.6e-22 Score=231.49 Aligned_cols=294 Identities=16% Similarity=0.180 Sum_probs=173.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCC---chH-HHHHHHHcCCCccc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVE---YPN-MMEFLESLGVDMGT 77 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~---~~~-~~~l~~~lgl~~~~ 77 (850)
||||||||++||+||.+|+++|++|+||||++.+||+++++..+|+.+|.|++.+.... .++ +.++++.+|.....
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLET 81 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCcccc
Confidence 89999999999999999999999999999999999999999999999999999874321 333 44677777754432
Q ss_pred cc--ceeeEEecCCCccccCCCCCCchhhHHhhhcc---ChHHHHHHHHHHhhhHHHHHH-----------HHhhcCCCC
Q 038410 78 SD--MSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVL---NPYFWQMLREMMKFKDDVLSY-----------VEELENSPD 141 (850)
Q Consensus 78 ~~--~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 141 (850)
.. ....+.+.+|..+.+. .............. ...+.+++....+........ .......+.
T Consensus 82 ~~~~~~~~~~~~~g~~~~~~--~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (493)
T TIGR02730 82 IPDPVQIHYHLPNGLNVKVH--REYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPL 159 (493)
T ss_pred cCCCccEEEECCCCeeEeee--cCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchh
Confidence 22 2233444455333322 12221222221111 111111111111111000000 000000000
Q ss_pred ------CCCCCcHHHHHhhcCCCHHHHHHHHhhhhcccccC-CcchhccCCHHHHHHHHHHhhhcCCCcEEEecCChHHH
Q 038410 142 ------IDRNETLGHFIKSRGYSELFLKAYLIPICSSVWSC-PSDGAMRFSAFSVLSFCRLFQLFGHPQCVTVRRHSHSQ 214 (850)
Q Consensus 142 ------~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~gG~~~l 214 (850)
.....++.+++++...++.+ ..++...+ ..++. ++.+. |+......+ .......++++.||++.+
T Consensus 160 ~~~~~~~~~~~s~~~~~~~~~~~~~l-~~~l~~~~-~~~~~~p~~~~---p~~~~~~~~---~~~~~~g~~~~~gG~~~l 231 (493)
T TIGR02730 160 ACLGLAKYLPQNAGDIARRYIRDPGL-LKFIDIEC-FCWSVVPADQT---PMINAGMVF---SDRHYGGINYPKGGVGQI 231 (493)
T ss_pred hhhHHHHHhhccHHHHHHHhcCCHHH-HHHHHHHH-HhccCCCcccc---hhhhHHHhh---cccccceEecCCChHHHH
Confidence 00135677777776444444 33333221 12222 22333 222222111 112235678899999999
Q ss_pred HHHHHHHhhccCceEeeCCceEEEEecCCc-eEEEeeCCcEEeCCEEEEecChHHHH-HhhcCCC-ChHHHHhhcCccee
Q 038410 215 IDKVSEQLKSWGIQIRMSCEVYSVFPADEG-CSIVCVNGSQEFYNGCVMAVHAPDAL-RILGNQA-TFDETRILGAFRYV 291 (850)
Q Consensus 215 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VV~A~p~~~~~-~ll~~~~-~~~~~~~l~~i~~~ 291 (850)
+++|++.++++|++|+++++|++|..++++ +.|++.+|+++.||+||+|++++.+. +|++... ++.....+..+.+.
T Consensus 232 ~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s 311 (493)
T TIGR02730 232 AESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKS 311 (493)
T ss_pred HHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCC
Confidence 999999999999999999999999988766 47888889889999999999877655 5665432 23333344455544
Q ss_pred e--cEEEEecCCCCCC
Q 038410 292 Y--RDVFLHRDKNFMP 305 (850)
Q Consensus 292 ~--~~v~l~~d~~~~p 305 (850)
. ..+++..+....|
T Consensus 312 ~s~~~~~l~l~~~~~p 327 (493)
T TIGR02730 312 PSFLSLHLGVKADVLP 327 (493)
T ss_pred CceEEEEEEecCccCC
Confidence 4 4556676665443
No 35
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.90 E-value=1.8e-23 Score=207.59 Aligned_cols=193 Identities=22% Similarity=0.323 Sum_probs=155.1
Q ss_pred chHHHHHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHH
Q 038410 555 TLAQARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIV 634 (850)
Q Consensus 555 ~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la 634 (850)
.....+++|+..||+.|++.++-++ +.+-+.+++.+.+++|++|||||||+|.++..++
T Consensus 12 ~v~~vF~~ia~~YD~~n~~~S~g~~---------------------~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~ 70 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDLMSFGLH---------------------RLWRRALISLLGIKPGDKVLDVACGTGDMALLLA 70 (238)
T ss_pred HHHHHHHhhHHHHHhhcccccCcch---------------------HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHH
Confidence 4567788999999999988887554 3344677888888899999999999999999999
Q ss_pred Hh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhccc
Q 038410 635 KQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLA 712 (850)
Q Consensus 635 ~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~Lk 712 (850)
+. ..++|+|+|+|++|++.|++++.+.+..+ ++|+++|++++| ++++||+|++...+.+++ +++.+++|++|+||
T Consensus 71 k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlK 147 (238)
T COG2226 71 KSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLK 147 (238)
T ss_pred HhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhc
Confidence 98 45799999999999999999999988875 999999999999 999999999999999996 58999999999999
Q ss_pred cCeEEEEEEecCCCCcCCCCcCccccccccccC-------------------CCCCCCHHHHHHHHhcCCceEEEEeeec
Q 038410 713 EHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFP-------------------GGCLPSLNRITSAMTSSSRLCVEHLENI 773 (850)
Q Consensus 713 pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p-------------------~~~~~~~~~~~~~~~~~~gf~v~~~~~~ 773 (850)
|||++++.++..+....... ....|..+++.| .-..|+.+++.+.+++ +||..+..+++
T Consensus 148 pgG~~~vle~~~p~~~~~~~-~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~-~gf~~i~~~~~ 225 (238)
T COG2226 148 PGGRLLVLEFSKPDNPVLRK-AYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEK-AGFEEVRYENL 225 (238)
T ss_pred CCeEEEEEEcCCCCchhhHH-HHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHh-cCceEEeeEee
Confidence 99999999988765421100 001111221222 1237888888877775 69987775554
No 36
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.90 E-value=3.4e-22 Score=207.54 Aligned_cols=221 Identities=17% Similarity=0.193 Sum_probs=182.6
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCC
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKK 682 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~ 682 (850)
.+.+++.+.++++.+|||||||+|..+..+++.++++|+|+|+|+++++.|++++.. .+++++.++|+.+.+ ++++
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCC
Confidence 467889999999999999999999999999887789999999999999999998753 348999999998877 6789
Q ss_pred ccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCcccccccccc-CCCCCCCHHHHHHHHhc
Q 038410 683 YDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVF-PGGCLPSLNRITSAMTS 761 (850)
Q Consensus 683 fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~~~~ 761 (850)
||+|++..+++|++.+++..++++++++|||||++++.++...... ... .-...++- ....+++..++.+.+++
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIE--NWD---EEFKAYIKKRKYTLIPIQEYGDLIKS 192 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccccc--CcH---HHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 9999999999999866789999999999999999999887654321 110 11111111 12246788899888775
Q ss_pred CCceEEEEeeecCCcHHHHHHHHHHHHHhcHHHHHhccCCHHHHHHHHHHHHHHHHHhccCcceEEEEEEEec
Q 038410 762 SSRLCVEHLENIGIHFYQTLRCWRTNLMEKQSEILALGFNEKFIRTWEYYFDYCAAGFKSRTLGNYQIVFSRP 834 (850)
Q Consensus 762 ~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~~~~~~~~r~w~~yl~~~~~~f~~~~~~~~q~~~~~~ 834 (850)
+||+++..+++..++...+..-.+.+.++.+++.+. |+++....+..-+..+-.+-+.|.+...-+.++||
T Consensus 193 -aGF~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wg~~~~~~~ 263 (263)
T PTZ00098 193 -CNFQNVVAKDISDYWLELLQVELKKLEEKKEEFLKL-YSEKEYNSLKDGWTRKIKDTKRKLQKWGYFKAQKM 263 (263)
T ss_pred -CCCCeeeEEeCcHHHHHHHHHHHHHHHHhHHHHHHh-cCHHHHHHHHHHHHHHHHHhhccccccceEeecCC
Confidence 799999999999988888888889999999999887 88888787777777888888888888888888874
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.89 E-value=2.4e-21 Score=220.70 Aligned_cols=219 Identities=16% Similarity=0.158 Sum_probs=183.1
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCC
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKK 682 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~ 682 (850)
.+.+++.+.++++.+|||||||+|.++..+++..+++|+|+|+|+++++.|+++.. +...+++|.++|+.+.+ ++++
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCC
Confidence 35777888888899999999999999999998878999999999999999998875 45558999999998887 6678
Q ss_pred ccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCcccccccccc-CCCCCCCHHHHHHHHhc
Q 038410 683 YDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVF-PGGCLPSLNRITSAMTS 761 (850)
Q Consensus 683 fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~~~~ 761 (850)
||+|+|..+++|++ ++..++++++++|||||++++.++....... ...+..++. .+..+++..++.+.+.+
T Consensus 333 fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~l~~ 404 (475)
T PLN02336 333 FDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTP------SPEFAEYIKQRGYDLHDVQAYGQMLKD 404 (475)
T ss_pred EEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCC------cHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999999999995 4789999999999999999998876543211 111222222 24467889999887775
Q ss_pred CCceEEEEeeecCCcHHHHHHHHHHHHHhcHHHHHhccCCHHHHHHHHHHHHHHHHHhccCcceEEEEEEEec
Q 038410 762 SSRLCVEHLENIGIHFYQTLRCWRTNLMEKQSEILALGFNEKFIRTWEYYFDYCAAGFKSRTLGNYQIVFSRP 834 (850)
Q Consensus 762 ~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~~~~~~~~r~w~~yl~~~~~~f~~~~~~~~q~~~~~~ 834 (850)
+||+++.+++++.+|..++..|.+.+.+++++.... +++........-+......++.|.++..-++++|.
T Consensus 405 -aGF~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~wg~~~a~k~ 475 (475)
T PLN02336 405 -AGFDDVIAEDRTDQFLQVLQRELDAVEKEKDEFISD-FSEEDYNDIVGGWKAKLVRSSSGEQKWGLFIAKKK 475 (475)
T ss_pred -CCCeeeeeecchHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHHHHHhHHHHHhhhcCCceeeEEEEEecC
Confidence 799999999999999999999999999999998876 88887777777777777888889988888888874
No 38
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.88 E-value=1.7e-22 Score=204.07 Aligned_cols=148 Identities=24% Similarity=0.340 Sum_probs=93.2
Q ss_pred hHHHHHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHH
Q 038410 556 LAQARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVK 635 (850)
Q Consensus 556 ~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~ 635 (850)
.+.-++.|+..||..|++.++..+..+ -+.+++.+..++|.+|||+|||+|.++..+++
T Consensus 9 v~~~Fd~ia~~YD~~n~~ls~g~~~~w---------------------r~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~ 67 (233)
T PF01209_consen 9 VRKMFDRIAPRYDRMNDLLSFGQDRRW---------------------RRKLIKLLGLRPGDRVLDVACGTGDVTRELAR 67 (233)
T ss_dssp -------------------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGG
T ss_pred HHHHHHHHHHHhCCCccccCCcHHHHH---------------------HHHHHhccCCCCCCEEEEeCCChHHHHHHHHH
Confidence 456678899999999999887665331 12566667788999999999999999999998
Q ss_pred h--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhccc
Q 038410 636 Q--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLA 712 (850)
Q Consensus 636 ~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~Lk 712 (850)
+ +.++|+|+|+|++|++.|+++++..+.. +|+++++|++++| ++++||.|++.+.++++++ +.+.+++++|+||
T Consensus 68 ~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d--~~~~l~E~~RVLk 144 (233)
T PF01209_consen 68 RVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD--RERALREMYRVLK 144 (233)
T ss_dssp GSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS--HHHHHHHHHHHEE
T ss_pred HCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC--HHHHHHHHHHHcC
Confidence 7 4579999999999999999999988876 8999999999999 7899999999999999964 7999999999999
Q ss_pred cCeEEEEEEecCCCC
Q 038410 713 EHGLLLLQFSSVPDQ 727 (850)
Q Consensus 713 pgG~~~~~~~~~~~~ 727 (850)
|||++++.+++.+..
T Consensus 145 PGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 145 PGGRLVILEFSKPRN 159 (233)
T ss_dssp EEEEEEEEEEEB-SS
T ss_pred CCeEEEEeeccCCCC
Confidence 999999999988764
No 39
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=7.3e-22 Score=212.50 Aligned_cols=290 Identities=21% Similarity=0.216 Sum_probs=186.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEee-CCeeeecceeeccCCCchHHHHHHHHcCCCccccc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI-DGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGTSD 79 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~ 79 (850)
|+|+|+|||+|||+||++|+++|++|||+|+++++||++.|++. +|-..|+|.|.| ...|.++++++++++.+.....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f-~~~Y~n~~~ll~~~~~~~~~~~ 79 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVF-FGCYYNLLTLLKELPIEDRLQL 79 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEe-chhHHHHHHHhhhCCchheeeh
Confidence 79999999999999999999999999999999999999999999 899999999999 5899999999999998854322
Q ss_pred ceeeEEe-----cCCCccccCCCCCCchhhHHh-----hhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHH
Q 038410 80 MSFSVSL-----DKGQGYEWGTRNGLSSLFAQK-----KNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLG 149 (850)
Q Consensus 80 ~~~~~~~-----~~g~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 149 (850)
.+....+ ..|..-.+..+.......... ..+........+-++........+.+.+ .++.++.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~~e-------ld~~s~~ 152 (485)
T COG3349 80 REHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPIGADRSLRE-------LDKISFA 152 (485)
T ss_pred HhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccchhHHHHHH-------HhcccHH
Confidence 2111111 111111121111110000000 0000011011111111110000111111 1688999
Q ss_pred HHHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH--HhhhcCCCcEEEecCCh-HHHHHHHHHHhhccC
Q 038410 150 HFIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR--LFQLFGHPQCVTVRRHS-HSQIDKVSEQLKSWG 226 (850)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~gG~-~~l~~~L~~~l~~~G 226 (850)
+||++++..+......+.|+........++.. |+...+.++. ++...+......+.|++ ..+...+.+.+++.|
T Consensus 153 d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~---sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G 229 (485)
T COG3349 153 DWLKEKGAREGAYKAAFAPIALALTFIDPEGC---SARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERG 229 (485)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhhcccCcccC---cchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccC
Confidence 99999988888888888898888888888888 5544444443 11112333444555655 467788999999999
Q ss_pred ceEeeCCceEEEEecCCc-----eEEEeeCCc---EEeCCEEEEecChHHHHHhhcCCCC-hHHHHhhcCcceee-cEEE
Q 038410 227 IQIRMSCEVYSVFPADEG-----CSIVCVNGS---QEFYNGCVMAVHAPDALRILGNQAT-FDETRILGAFRYVY-RDVF 296 (850)
Q Consensus 227 ~~i~~~~~V~~I~~~~~~-----v~V~~~~G~---~i~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~i~~~~-~~v~ 296 (850)
.+++.+.+|+.|..+... +.+... +. .+.++.|+.+.........++.... +...+.+......+ .+++
T Consensus 230 ~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~ 308 (485)
T COG3349 230 RKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLH 308 (485)
T ss_pred ceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEE
Confidence 999999999999887522 444444 43 3456667777777777777766554 44455666666666 5556
Q ss_pred EecCCC
Q 038410 297 LHRDKN 302 (850)
Q Consensus 297 l~~d~~ 302 (850)
+.++..
T Consensus 309 l~~~~~ 314 (485)
T COG3349 309 LRFDGW 314 (485)
T ss_pred EeecCc
Confidence 777653
No 40
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=6.2e-21 Score=216.20 Aligned_cols=261 Identities=21% Similarity=0.274 Sum_probs=154.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcC-CCccc--
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLG-VDMGT-- 77 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lg-l~~~~-- 77 (850)
+||||||||++||+||.+|+++|++|+||||++++||+++|.+.+||.+|.|++++...... .++++++ ++...
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~---~~~~~l~~l~~~~l~ 80 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPG---PLFRELGNLDADGLD 80 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchH---HHHHHhccCccccee
Confidence 59999999999999999999999999999999999999999999999999999887433333 5555555 33322
Q ss_pred ---ccceeeEEecCCCccccCC-CCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHh-hcCCC--CCC-------
Q 038410 78 ---SDMSFSVSLDKGQGYEWGT-RNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEE-LENSP--DID------- 143 (850)
Q Consensus 78 ---~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~------- 143 (850)
....+.....+|..+.... .......+............+.+..+.+........+.. ..... ...
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (487)
T COG1233 81 LLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLR 160 (487)
T ss_pred eeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHH
Confidence 2233344445455433321 111111111111111111112222222211111110000 00000 000
Q ss_pred ----CCCcHHHHHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHHHhhhcCCCcEEEecCChHHHHHHHH
Q 038410 144 ----RNETLGHFIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRLFQLFGHPQCVTVRRHSHSQIDKVS 219 (850)
Q Consensus 144 ----~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~ 219 (850)
...+..+++... +.....+..+.......+ .++... + .+..++. ......++.+++|||+.++++|+
T Consensus 161 ~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~---~--a~~~~~~--~~~~~~G~~~p~GG~~al~~aL~ 231 (487)
T COG1233 161 LLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTP---P--ALYLLLS--HLGLSGGVFYPRGGMGALVDALA 231 (487)
T ss_pred HHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCch---h--HHHHHHH--HhcccCCeeeeeCCHHHHHHHHH
Confidence 123344444444 443333333322211112 233222 1 1222222 22345678899999999999999
Q ss_pred HHhhccCceEeeCCceEEEEecCCc-eEEEeeCCcEEeCCEEEEecChHHHHHhh
Q 038410 220 EQLKSWGIQIRMSCEVYSVFPADEG-CSIVCVNGSQEFYNGCVMAVHAPDALRIL 273 (850)
Q Consensus 220 ~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VV~A~p~~~~~~ll 273 (850)
+.++++|++|+++++|++|..++++ ++|++.+|+.+.+|.||++........+.
T Consensus 232 ~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~ 286 (487)
T COG1233 232 ELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLARLL 286 (487)
T ss_pred HHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhhhhh
Confidence 9999999999999999999999875 78888888778999999999884444444
No 41
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.84 E-value=6.4e-20 Score=190.32 Aligned_cols=193 Identities=17% Similarity=0.142 Sum_probs=140.7
Q ss_pred hHHHHHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHH
Q 038410 556 LAQARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVK 635 (850)
Q Consensus 556 ~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~ 635 (850)
.+..++.++..||..|++.....+ ...-+.+++.+.++++.+|||||||+|.++..+++
T Consensus 35 v~~~f~~~A~~YD~~~~~~s~g~~---------------------~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~ 93 (261)
T PLN02233 35 RQALFNRIAPVYDNLNDLLSLGQH---------------------RIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSE 93 (261)
T ss_pred HHHHHHHhhhHHHHhhhhhcCChh---------------------HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHH
Confidence 355667788888866665543111 11112345667788999999999999999999998
Q ss_pred hc--CCEEEEEeCCHHHHHHHHHHHHH--cCCCCCEEEEEcccCCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhc
Q 038410 636 QT--GCKYTGITLSEEQLKYTETKVKE--AGLQDHIRLYLCDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESL 710 (850)
Q Consensus 636 ~~--~~~v~gid~s~~~~~~a~~~~~~--~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~ 710 (850)
+. .++|+|+|+|++|++.|+++... .+..++++++++|+.+++ ++++||.|++..+++|++ ++..++++++|+
T Consensus 94 ~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rv 171 (261)
T PLN02233 94 KVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRV 171 (261)
T ss_pred HhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCC--CHHHHHHHHHHH
Confidence 73 46999999999999999987642 223348999999999998 778999999999999995 579999999999
Q ss_pred cccCeEEEEEEecCCCCcCCCCcCcccccccc-ccCC-----------------CCCCCHHHHHHHHhcCCceEEEEeee
Q 038410 711 LAEHGLLLLQFSSVPDQCYDGHRLSPGFITEY-VFPG-----------------GCLPSLNRITSAMTSSSRLCVEHLEN 772 (850)
Q Consensus 711 LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~p~-----------------~~~~~~~~~~~~~~~~~gf~v~~~~~ 772 (850)
|||||++++.++..+...+... ...|..+. +.|- ..+++..++.+.+++ +||+.....+
T Consensus 172 LkpGG~l~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~-aGF~~~~~~~ 248 (261)
T PLN02233 172 LKPGSRVSILDFNKSTQPFTTS--MQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALE-AGFSSAKHYE 248 (261)
T ss_pred cCcCcEEEEEECCCCCcHHHHH--HHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHH-CCCCEEEEEE
Confidence 9999999999887655321110 00111110 0010 236789999888875 7999887766
Q ss_pred cC
Q 038410 773 IG 774 (850)
Q Consensus 773 ~~ 774 (850)
+.
T Consensus 249 ~~ 250 (261)
T PLN02233 249 IS 250 (261)
T ss_pred cC
Confidence 54
No 42
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.81 E-value=2.1e-19 Score=189.39 Aligned_cols=165 Identities=19% Similarity=0.370 Sum_probs=126.0
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecch
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEMI 692 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~ 692 (850)
.++.+|||||||+|.++..+++. |++|+|||+|+++++.|+++....+..++++++++|+++++ .+++||+|++.+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 46789999999999999999985 99999999999999999998776666568999999999887 56799999999999
Q ss_pred hhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCC----CCCCHHHHHHHHhcCCceEEE
Q 038410 693 ENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGG----CLPSLNRITSAMTSSSRLCVE 768 (850)
Q Consensus 693 ~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~----~~~~~~~~~~~~~~~~gf~v~ 768 (850)
||+.+ +..+++++.++|||||.+++.++......+........++.+.+.++. .+.+++++...+++ +||++.
T Consensus 209 eHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~-aGf~i~ 285 (322)
T PLN02396 209 EHVAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR-ASVDVK 285 (322)
T ss_pred HhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH-cCCeEE
Confidence 99954 799999999999999999998876432211111111122223333332 35789999888886 799998
Q ss_pred EeeecCCcHHHHHHHH
Q 038410 769 HLENIGIHFYQTLRCW 784 (850)
Q Consensus 769 ~~~~~~~~y~~tl~~w 784 (850)
++.. ..|......|
T Consensus 286 ~~~G--~~~~p~~~~w 299 (322)
T PLN02396 286 EMAG--FVYNPITGRW 299 (322)
T ss_pred EEee--eEEcCcCCeE
Confidence 7744 3454443334
No 43
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.81 E-value=2.9e-20 Score=180.08 Aligned_cols=161 Identities=20% Similarity=0.384 Sum_probs=123.8
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecch
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEMI 692 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~ 692 (850)
-+|.+|||||||.|.++..+|+. |++|+|+|+|++.++.|+..+.+.|+ ++++.+...+++. ..++||+|+|.+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 47899999999999999999998 99999999999999999999999888 5778888888877 44899999999999
Q ss_pred hhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCC-----CCCHHHHHHHHhcCCceEE
Q 038410 693 ENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGC-----LPSLNRITSAMTSSSRLCV 767 (850)
Q Consensus 693 ~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~-----~~~~~~~~~~~~~~~gf~v 767 (850)
||+++ +..+++.|.+++||||.+++++|......+........++-+ ++|.|. +-.++++...+.. +++.+
T Consensus 135 EHv~d--p~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~~-~~~~~ 210 (243)
T COG2227 135 EHVPD--PESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLLG-ANLKI 210 (243)
T ss_pred HccCC--HHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhccc-CCceE
Confidence 99954 789999999999999999999987543222111112222333 456543 4567777776664 68887
Q ss_pred EEeeecCCcHHHHHHH
Q 038410 768 EHLENIGIHFYQTLRC 783 (850)
Q Consensus 768 ~~~~~~~~~y~~tl~~ 783 (850)
.+... .+|.+....
T Consensus 211 ~~~~g--~~y~p~~~~ 224 (243)
T COG2227 211 IDRKG--LTYNPLTNS 224 (243)
T ss_pred Eeecc--eEeccccce
Confidence 76643 445443333
No 44
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.81 E-value=3.5e-19 Score=183.16 Aligned_cols=192 Identities=17% Similarity=0.246 Sum_probs=144.2
Q ss_pred hHHHHHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHH
Q 038410 556 LAQARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVK 635 (850)
Q Consensus 556 ~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~ 635 (850)
.....+.++.+||..|.+.....+ .+..+.+++.+.++++++|||||||+|.++..+++
T Consensus 7 ~~~~f~~~a~~yd~~~~~~~~~~~---------------------~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~ 65 (231)
T TIGR02752 7 VHKVFEKIYKKYDRMNSVISFQRH---------------------KKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAE 65 (231)
T ss_pred HHHHHHHhhhHHhHHHHHhcCCch---------------------HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHH
Confidence 355677888999976665433111 22235678888899999999999999999999998
Q ss_pred h--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhccc
Q 038410 636 Q--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLA 712 (850)
Q Consensus 636 ~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~Lk 712 (850)
. ++++|+|+|+|+++++.|+++++..++ ++++++++|..+++ ++++||+|++..+++|++ ++..+++++.++||
T Consensus 66 ~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~~~Lk 142 (231)
T TIGR02752 66 AVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVP--DYMQVLREMYRVVK 142 (231)
T ss_pred HhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEecccccCC--CHHHHHHHHHHHcC
Confidence 7 457999999999999999999988777 48999999998887 668999999999999995 47899999999999
Q ss_pred cCeEEEEEEecCCCCcCCCCcCccccccccccC-------------------CCCCCCHHHHHHHHhcCCceEEEEeeec
Q 038410 713 EHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFP-------------------GGCLPSLNRITSAMTSSSRLCVEHLENI 773 (850)
Q Consensus 713 pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p-------------------~~~~~~~~~~~~~~~~~~gf~v~~~~~~ 773 (850)
|||++++.+.+.+.... +.....+..+++.| ...+|+..++.+.+++ +||++.+++.+
T Consensus 143 ~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-aGf~~~~~~~~ 219 (231)
T TIGR02752 143 PGGKVVCLETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQE-AGFKDVEVKSY 219 (231)
T ss_pred cCeEEEEEECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCeeEEEEc
Confidence 99999987765543210 00000000000000 1246788999888775 79998887765
Q ss_pred C
Q 038410 774 G 774 (850)
Q Consensus 774 ~ 774 (850)
.
T Consensus 220 ~ 220 (231)
T TIGR02752 220 T 220 (231)
T ss_pred c
Confidence 4
No 45
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.81 E-value=2.7e-19 Score=172.14 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=129.3
Q ss_pred HHHHHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh
Q 038410 557 AQARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ 636 (850)
Q Consensus 557 ~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~ 636 (850)
..-+++|+..||+.||..++...+ -+-+....+|+..+++++||++||+|.++..+.++
T Consensus 63 ~~vF~~vA~~YD~mND~mSlGiHR---------------------lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~ 121 (296)
T KOG1540|consen 63 HHVFESVAKKYDIMNDAMSLGIHR---------------------LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRH 121 (296)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhH---------------------HHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHh
Confidence 456788999999999998874432 22357788999999999999999999999999987
Q ss_pred -cC------CEEEEEeCCHHHHHHHHHHHHHcCCCCC--EEEEEcccCCCC-CCCCccEEEEecchhhhChhhHHHHHHH
Q 038410 637 -TG------CKYTGITLSEEQLKYTETKVKEAGLQDH--IRLYLCDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGC 706 (850)
Q Consensus 637 -~~------~~v~gid~s~~~~~~a~~~~~~~gl~~~--v~~~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~ 706 (850)
.. .+|+.+|+|++|++.+++|..+.++.++ +.++++|++++| ++.+||..++.+.|..+.+ +++.+++
T Consensus 122 v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th--~~k~l~E 199 (296)
T KOG1540|consen 122 VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH--IQKALRE 199 (296)
T ss_pred hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC--HHHHHHH
Confidence 33 6899999999999999999988888666 999999999999 8899999999999999965 7999999
Q ss_pred HHhccccCeEEEEEEecCCC
Q 038410 707 CESLLAEHGLLLLQFSSVPD 726 (850)
Q Consensus 707 ~~r~LkpgG~~~~~~~~~~~ 726 (850)
++|+|||||++.+.++...+
T Consensus 200 AYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 200 AYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred HHHhcCCCcEEEEEEccccc
Confidence 99999999999998877544
No 46
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.80 E-value=1.6e-17 Score=179.16 Aligned_cols=361 Identities=12% Similarity=0.131 Sum_probs=216.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeee-ecceeeccCCCchHHHHHHHHcCCCccccc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDL-DIGFMLFNHVEYPNMMEFLESLGVDMGTSD 79 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~-d~G~~~~~~~~~~~~~~l~~~lgl~~~~~~ 79 (850)
.||+|||||+|||++|+.|++.|.+|+|+|+++.+||++.+....|..+ +.|+|.+. .....+.+++.++.- .....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~-t~~~~v~~~~~~~~~-~~~~~ 79 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFH-TNNQYVWDYISPFFE-LNNYQ 79 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEe-cCcHHHHHHHHhhcc-cccee
Confidence 3899999999999999999999999999999999999998877777554 88999984 567788888777531 11111
Q ss_pred ceeeEEecCCCccccCCCCC-CchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHH---hhc
Q 038410 80 MSFSVSLDKGQGYEWGTRNG-LSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFI---KSR 155 (850)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l---~~~ 155 (850)
. ......+|+.++++-... +..++ .....+.+.+.+. .. ... .... +..++.+|. .+.
T Consensus 80 ~-~~~~~~~g~~~~~P~~~~~i~~l~-------~~~~~~~~~~~l~---~~---~~~---~~~~-~~~~~~e~~d~~~~~ 141 (377)
T TIGR00031 80 H-RVLALYNNLDLTLPFNFNQFRKLL-------GVKDAQELQNFFN---AQ---FKY---GDHV-PLEELQEIADPDIQL 141 (377)
T ss_pred E-EEEEEECCeEEccCCCHHHHHHhc-------ccchHHHHHHHHH---HH---hhc---ccCC-CCCCHHHHHHHHHHH
Confidence 1 123345566666654211 11111 1111111111111 00 000 0000 123455555 666
Q ss_pred CCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH----HhhhcCCCcEEEecCChHHHHHHHHHHhhccCceEee
Q 038410 156 GYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR----LFQLFGHPQCVTVRRHSHSQIDKVSEQLKSWGIQIRM 231 (850)
Q Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~ 231 (850)
+++.+.+.++.|+..++|+.+++++ ++..+...-. --..+.......|++|...+++.|.+.- +.+|++
T Consensus 142 -~G~~lye~ff~~Yt~K~Wg~~p~el---~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~---~i~v~l 214 (377)
T TIGR00031 142 -LYQFLYQKVYKPYTVKQWGLPAEEI---DPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHP---LIDVKL 214 (377)
T ss_pred -HHHHHHHHhccccCceeeCCChHHC---CHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcC---CCEEEe
Confidence 8999999999999999999999998 5543321111 1112333455688999999999988764 678999
Q ss_pred CCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCcceeecEEEEec-CCCCCCCCCCC
Q 038410 232 SCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRYVYRDVFLHR-DKNFMPQNPAA 310 (850)
Q Consensus 232 ~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~~~~~v~l~~-d~~~~p~~~~~ 310 (850)
|+.+..++..+++|.+. .+ .+. +.||.|.|.+.... ...+.++|.+..+-..+ +.... ..
T Consensus 215 ~~~~~~~~~~~~~~~~~--~~-~~~-~~vi~Tg~id~~f~-----------~~~g~L~yrsl~f~~e~~~~~~~----q~ 275 (377)
T TIGR00031 215 NCHINLLKDKDSQLHFA--NK-AIR-KPVIYTGLIDQLFG-----------YRFGALQYRSLKFEWERHEFKNF----QG 275 (377)
T ss_pred CCccceeeccccceeec--cc-ccc-CcEEEecCchHHHh-----------hccCcccceeEEEEEEEeccccC----CC
Confidence 99888888655545443 23 233 88999999876543 34567888886654332 22211 11
Q ss_pred ceeeeecccCCCceEEEEeccccCCCCCCCCceEEecCCCCCCcc-ceeeEEeccCCCChHHHHHHHHhhhhc-CCCCeE
Q 038410 311 WSAWNFVGSTNGKICLTYCLNVLQNIGETSMPFLATLNPDRTPQN-TLLKWSTGHSVPSVAASKASLELHLIQ-GKRGIW 388 (850)
Q Consensus 311 ~~s~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~l~~~~-~~~~l~ 388 (850)
..-.+|+ ..-....++.+-+-..... ...... ...|.. ....+...+|+++....+......++. ..+||+
T Consensus 276 ~~~vnyp-~~~~~tRI~e~k~f~~~~~---~~t~i~---~E~~~~~~~~~~~pyYpi~~~~~~~~~~~y~~la~~~~~v~ 348 (377)
T TIGR00031 276 YAVVNFP-LNVPITRIVEYKHLTYVGS---KQTIVS---KEYPGEWKVGDPEPYYPVNDNKNMALFKKYLELASREDNLI 348 (377)
T ss_pred CeEEEcC-CCCCcceEEeeecCCCCCC---CCeEEE---eecchhhcCCCceeeeeccCHHHHHHHHHHHHHHhcCCCEE
Confidence 2223443 1111222222221110000 000000 001111 112336778988888877777666643 456999
Q ss_pred EEccccCCCCC--cchhhHHHHHHHHhc
Q 038410 389 YSGVDQGYGFP--EDGLKVGMIAAHGVL 414 (850)
Q Consensus 389 ~aG~~~g~G~~--e~A~~sG~~aA~~il 414 (850)
++|.+..+.+. +.|+.+|+.+|++++
T Consensus 349 ~~GRlg~y~Y~nMD~~i~~al~~~~~~~ 376 (377)
T TIGR00031 349 LLGRLAEYQYYDMDQAILAALYKAEQLL 376 (377)
T ss_pred EeeeeeEeEeecHHHHHHHHHHHHHHhh
Confidence 99996644432 899999999999864
No 47
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.77 E-value=1.9e-19 Score=174.88 Aligned_cols=152 Identities=21% Similarity=0.393 Sum_probs=118.6
Q ss_pred CCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CEEEEEcccCCCCCCCCccEEEEec
Q 038410 616 GLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQD-----HIRLYLCDYRQMPEVKKYDTIISCE 690 (850)
Q Consensus 616 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~-----~v~~~~~D~~~~~~~~~fD~v~s~~ 690 (850)
|++|||+|||.|-++..||+. |++|+|||+|+.+++.|++........+ ++++.+.|.+++. ++||+|+|.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHH
Confidence 588999999999999999996 9999999999999999999955443322 3677777777776 5699999999
Q ss_pred chhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCC----CCCHHHHHHHHhcCCceE
Q 038410 691 MIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGC----LPSLNRITSAMTSSSRLC 766 (850)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~----~~~~~~~~~~~~~~~gf~ 766 (850)
++||+ ++++.+++.+.++|||||++++.++...-..+.......+.+.+.+.+|++ ++++.++...+.. .++.
T Consensus 167 vleHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~-~~~~ 243 (282)
T KOG1270|consen 167 VLEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNA-NGAQ 243 (282)
T ss_pred HHHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHh-cCcc
Confidence 99999 679999999999999999999999876543332222233344443333433 6789999888776 5888
Q ss_pred EEEeeec
Q 038410 767 VEHLENI 773 (850)
Q Consensus 767 v~~~~~~ 773 (850)
+.++...
T Consensus 244 v~~v~G~ 250 (282)
T KOG1270|consen 244 VNDVVGE 250 (282)
T ss_pred hhhhhcc
Confidence 8776543
No 48
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.76 E-value=1.1e-17 Score=174.12 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=126.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-- 678 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-- 678 (850)
.+.++.+++.+. .++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|++++++.|+.++++++++|+.+++
T Consensus 31 ~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~ 108 (255)
T PRK11036 31 WQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH 108 (255)
T ss_pred HHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh
Confidence 344567777776 55679999999999999999997 89999999999999999999999998889999999998875
Q ss_pred CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCC-----CcCc-cccc---cccccCCCCC
Q 038410 679 EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDG-----HRLS-PGFI---TEYVFPGGCL 749 (850)
Q Consensus 679 ~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~-----~~~~-~~~~---~~~i~p~~~~ 749 (850)
.+++||+|++..+++|+. ++..+++++.++|||||++++..+......... .... .... .....|. ..
T Consensus 109 ~~~~fD~V~~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~ 185 (255)
T PRK11036 109 LETPVDLILFHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPD-YP 185 (255)
T ss_pred cCCCCCEEEehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCC-CC
Confidence 467999999999999995 468999999999999999998765532210000 0000 0000 0111222 23
Q ss_pred CCHHHHHHHHhcCCceEEEEeeecC
Q 038410 750 PSLNRITSAMTSSSRLCVEHLENIG 774 (850)
Q Consensus 750 ~~~~~~~~~~~~~~gf~v~~~~~~~ 774 (850)
.+++++.+.+++ +||++++...++
T Consensus 186 ~~~~~l~~~l~~-aGf~~~~~~gi~ 209 (255)
T PRK11036 186 LDPEQVYQWLEE-AGWQIMGKTGVR 209 (255)
T ss_pred CCHHHHHHHHHH-CCCeEeeeeeEE
Confidence 467888877775 799998766543
No 49
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.76 E-value=3.6e-17 Score=162.60 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=118.2
Q ss_pred HHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccE
Q 038410 606 LLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDT 685 (850)
Q Consensus 606 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~ 685 (850)
.+++.+...++.+|||+|||+|.++.+++++ +.+|+|+|+|+++++.++++++..++. ++++.+.|+.+++.+++||+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~ 98 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFDGEYDF 98 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcCCCcCE
Confidence 5566666777889999999999999999997 899999999999999999999988885 69999999988764568999
Q ss_pred EEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhcCCce
Q 038410 686 IISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRL 765 (850)
Q Consensus 686 v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf 765 (850)
|+++.+++|++.+....+++++.++|||||++++......+... ... . +| ...+.+++.+.+. ||
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~--~~~--~------~~--~~~~~~el~~~~~---~~ 163 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--CTV--G------FP--FAFKEGELRRYYE---GW 163 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC--CCC--C------CC--CccCHHHHHHHhC---CC
Confidence 99999999998778899999999999999997664433222110 000 0 11 3356777766543 88
Q ss_pred EEEEeee
Q 038410 766 CVEHLEN 772 (850)
Q Consensus 766 ~v~~~~~ 772 (850)
++...++
T Consensus 164 ~~~~~~~ 170 (197)
T PRK11207 164 EMVKYNE 170 (197)
T ss_pred eEEEeeC
Confidence 8877643
No 50
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.75 E-value=2.7e-17 Score=171.21 Aligned_cols=163 Identities=15% Similarity=0.185 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC
Q 038410 599 AQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM 677 (850)
Q Consensus 599 aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~ 677 (850)
-|.+....+++.+...++.+|||||||+|.++..++++ ++++|+|+|+|+.|++.|+++ +++++++|+.++
T Consensus 13 ~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~ 84 (255)
T PRK14103 13 HRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDW 84 (255)
T ss_pred HhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhC
Confidence 34455678889998889999999999999999999988 688999999999999999763 578999999887
Q ss_pred CCCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCC----cCcccccc---cccc-CCCCC
Q 038410 678 PEVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGH----RLSPGFIT---EYVF-PGGCL 749 (850)
Q Consensus 678 ~~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~----~~~~~~~~---~~i~-p~~~~ 749 (850)
+++++||+|+|+.+++|++ ++..++++++++|||||+++++............ .....|.. ...+ .+..+
T Consensus 85 ~~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 162 (255)
T PRK14103 85 KPKPDTDVVVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVV 162 (255)
T ss_pred CCCCCceEEEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCC
Confidence 7667999999999999996 4799999999999999999997543211110000 00011211 1111 12346
Q ss_pred CCHHHHHHHHhcCCceEEEEeee
Q 038410 750 PSLNRITSAMTSSSRLCVEHLEN 772 (850)
Q Consensus 750 ~~~~~~~~~~~~~~gf~v~~~~~ 772 (850)
++..++.+.+.+ +||++...+.
T Consensus 163 ~~~~~~~~~l~~-aGf~v~~~~~ 184 (255)
T PRK14103 163 QTPAGYAELLTD-AGCKVDAWET 184 (255)
T ss_pred CCHHHHHHHHHh-CCCeEEEEee
Confidence 788888877775 7998665443
No 51
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.75 E-value=1.3e-16 Score=176.52 Aligned_cols=252 Identities=12% Similarity=0.120 Sum_probs=153.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeC--------------------CeeeecceeeccCCCc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID--------------------GVDLDIGFMLFNHVEY 61 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~--------------------G~~~d~G~~~~~~~~~ 61 (850)
||||||+|++|+.+|..|+++|++|+++|+++..||+.+|.... .+.+|+.++.+. ..
T Consensus 6 DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~--~~ 83 (443)
T PTZ00363 6 DVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM--AS 83 (443)
T ss_pred eEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee--cC
Confidence 89999999999999999999999999999999999999987432 233555555552 23
Q ss_pred hHHHHHHHHcCCCccccc--ceeeEEe-cCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhh-c
Q 038410 62 PNMMEFLESLGVDMGTSD--MSFSVSL-DKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEEL-E 137 (850)
Q Consensus 62 ~~~~~l~~~lgl~~~~~~--~~~~~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (850)
..+.+++.+.++...... ..-.+.+ .+|+....+. .-...+. ..++... .-..+++|......+.... .
T Consensus 84 G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~--s~~~~~~--s~ll~l~---eKr~l~kfl~~v~~~~~~~~~ 156 (443)
T PTZ00363 84 GELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPA--TDMEALS--SPLMGFF---EKNRCKNFLQYVSNYDENDPE 156 (443)
T ss_pred ChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCC--CHHHHhh--CCCcchh---hHHHHHHHHHHHHhhccCChh
Confidence 566688878776654211 1112222 3344333221 0011110 1111110 1112222222221111100 0
Q ss_pred CCCCC-CCCCcHHHHHhhcCCCHHHHHHH---HhhhhcccccCCcchhccCCHHHHHHHHHHhhhcCCCcEEEecCChHH
Q 038410 138 NSPDI-DRNETLGHFIKSRGYSELFLKAY---LIPICSSVWSCPSDGAMRFSAFSVLSFCRLFQLFGHPQCVTVRRHSHS 213 (850)
Q Consensus 138 ~~~~~-~~~~s~~~~l~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~gG~~~ 213 (850)
..... .+..++.+|+++.++++...+.+ +.......+...+... ....+..|+..+..++...+.++.+|++.
T Consensus 157 ~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~---tl~ri~~y~~S~~~~g~~p~~yp~gG~g~ 233 (443)
T PTZ00363 157 THKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIE---TVMRIKLYMDSLSRYGKSPFIYPLYGLGG 233 (443)
T ss_pred hhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHH---HHHHHHHHHHHHhhccCCcceeeCCCHHH
Confidence 00011 13689999999999998865532 2222111122111110 11122223334455666667888999999
Q ss_pred HHHHHHHHhhccCceEeeCCceEEEEecCCc--eEEEeeCCcEEeCCEEEEecC
Q 038410 214 QIDKVSEQLKSWGIQIRMSCEVYSVFPADEG--CSIVCVNGSQEFYNGCVMAVH 265 (850)
Q Consensus 214 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~i~ad~VV~A~p 265 (850)
++++|++.+...|++++++++|++|..++++ +.|++.+|+++.|++||+...
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 9999999999999999999999999987644 679999999999999998544
No 52
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.75 E-value=5e-17 Score=170.60 Aligned_cols=170 Identities=16% Similarity=0.122 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC
Q 038410 599 AQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP 678 (850)
Q Consensus 599 aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~ 678 (850)
+..-+.+.++.++...+|++|||||||+|.++..++.....+|+|||+|+.|+..++...+..+...++.+..+|+.+++
T Consensus 105 ~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp 184 (314)
T TIGR00452 105 RSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH 184 (314)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC
Confidence 34556678888888888999999999999999999887224799999999998876543333233347899999999988
Q ss_pred CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCcccc--ccccccCCCCCCCHHHHH
Q 038410 679 EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGF--ITEYVFPGGCLPSLNRIT 756 (850)
Q Consensus 679 ~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~p~~~~~~~~~~~ 756 (850)
...+||+|+|+++++|++ ++..++++++++|||||.+++.+................+ +.. + -.+|+..++.
T Consensus 185 ~~~~FD~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~n-v---~flpS~~~L~ 258 (314)
T TIGR00452 185 ELYAFDTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKN-V---YFIPSVSALK 258 (314)
T ss_pred CCCCcCEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccc-c---ccCCCHHHHH
Confidence 556899999999999994 5789999999999999999998776543221111110011 111 1 1468999998
Q ss_pred HHHhcCCceEEEEeeecCC
Q 038410 757 SAMTSSSRLCVEHLENIGI 775 (850)
Q Consensus 757 ~~~~~~~gf~v~~~~~~~~ 775 (850)
..+++ +||+.+.+.+...
T Consensus 259 ~~L~~-aGF~~V~i~~~~~ 276 (314)
T TIGR00452 259 NWLEK-VGFENFRILDVLK 276 (314)
T ss_pred HHHHH-CCCeEEEEEeccC
Confidence 88875 7999988776543
No 53
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.74 E-value=2.9e-17 Score=148.24 Aligned_cols=107 Identities=24% Similarity=0.401 Sum_probs=93.7
Q ss_pred CCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEccc-CCCCCCCCccEEEEec-c
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDY-RQMPEVKKYDTIISCE-M 691 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~-~~~~~~~~fD~v~s~~-~ 691 (850)
|+.+|||||||+|.++..++++ ++++|+|||+|+++++.|++++.+.+..++++++++|+ ......++||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 6789999999999999999995 79999999999999999999998888889999999999 4444456899999999 4
Q ss_pred hhhhC-hhhHHHHHHHHHhccccCeEEEEEE
Q 038410 692 IENVG-HEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 692 ~~~~~-~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
++++. .++..++++++.+.|||||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44332 2567899999999999999999965
No 54
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=5.9e-17 Score=172.65 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=127.5
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCC
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEV 680 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~ 680 (850)
.-+.+.+...+...+|.+|||||||+|.++..+++....+|+|+|+|+.++..++...+..+...+++++.+|+++++.+
T Consensus 108 ~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~ 187 (322)
T PRK15068 108 DWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL 187 (322)
T ss_pred HhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCc
Confidence 44567777788766789999999999999999999833479999999999887665544434345899999999998866
Q ss_pred CCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCC-CCCCCHHHHHHHH
Q 038410 681 KKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPG-GCLPSLNRITSAM 759 (850)
Q Consensus 681 ~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~-~~~~~~~~~~~~~ 759 (850)
++||+|+|.++++|+. ++..++++++++|||||.+++.++...............+. -+++ -.+|+..++...+
T Consensus 188 ~~FD~V~s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~---~~~~~~~lps~~~l~~~L 262 (322)
T PRK15068 188 KAFDTVFSMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYA---KMRNVYFIPSVPALKNWL 262 (322)
T ss_pred CCcCEEEECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHh---cCccceeCCCHHHHHHHH
Confidence 7899999999999994 57899999999999999999987654432211110000010 0111 1468999998888
Q ss_pred hcCCceEEEEeeecCC
Q 038410 760 TSSSRLCVEHLENIGI 775 (850)
Q Consensus 760 ~~~~gf~v~~~~~~~~ 775 (850)
++ +||+.+.+.+...
T Consensus 263 ~~-aGF~~i~~~~~~~ 277 (322)
T PRK15068 263 ER-AGFKDVRIVDVSV 277 (322)
T ss_pred HH-cCCceEEEEeCCC
Confidence 86 7999998887654
No 55
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.73 E-value=1.6e-16 Score=157.65 Aligned_cols=149 Identities=13% Similarity=0.129 Sum_probs=116.3
Q ss_pred HHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccE
Q 038410 606 LLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDT 685 (850)
Q Consensus 606 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~ 685 (850)
.+++.+.+.++.+|||||||+|.++.+++++ +.+|+|+|+|+++++.++++++..++ ++++...|+...+.+++||.
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCCCCE
Confidence 4556666666789999999999999999997 89999999999999999999988887 47888888876554468999
Q ss_pred EEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhcCCce
Q 038410 686 IISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRL 765 (850)
Q Consensus 686 v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf 765 (850)
|+++.+++|++.++...++++++++|||||++++........ +. .. .|..+..+..++.+.+. +|
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~---~~--------~~~~~~~~~~el~~~f~---~~ 162 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YP---CH--------MPFSFTFKEDELRQYYA---DW 162 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-CC---CC--------CCcCccCCHHHHHHHhC---CC
Confidence 999999999987788999999999999999977654432211 10 00 12234567888876653 58
Q ss_pred EEEEeee
Q 038410 766 CVEHLEN 772 (850)
Q Consensus 766 ~v~~~~~ 772 (850)
++...+.
T Consensus 163 ~~~~~~e 169 (195)
T TIGR00477 163 ELLKYNE 169 (195)
T ss_pred eEEEeec
Confidence 8777664
No 56
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.72 E-value=1.8e-16 Score=165.84 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCC
Q 038410 598 VAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQ 676 (850)
Q Consensus 598 ~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~ 676 (850)
..|.+..+.+++.+.++++.+|||||||+|.++..+++. ++++|+|+|+|+.+++.|+++. .+++++.+|+.+
T Consensus 14 ~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~ 87 (258)
T PRK01683 14 DERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIAS 87 (258)
T ss_pred HHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhc
Confidence 345566778899999999999999999999999999987 5789999999999999999874 268999999988
Q ss_pred CCCCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcC----CCCcCccccccccccCC---CCC
Q 038410 677 MPEVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCY----DGHRLSPGFITEYVFPG---GCL 749 (850)
Q Consensus 677 ~~~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~p~---~~~ 749 (850)
+.++++||+|+++.+++|+++ ...++++++++|||||.++++......... ........|...+..++ ..+
T Consensus 88 ~~~~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 165 (258)
T PRK01683 88 WQPPQALDLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPL 165 (258)
T ss_pred cCCCCCccEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCC
Confidence 765579999999999999954 789999999999999999996432111000 00011223443333222 456
Q ss_pred CCHHHHHHHHhcCCceEEEEee
Q 038410 750 PSLNRITSAMTSSSRLCVEHLE 771 (850)
Q Consensus 750 ~~~~~~~~~~~~~~gf~v~~~~ 771 (850)
|+..++.+.+.+ +|+.+...+
T Consensus 166 ~~~~~~~~~l~~-~g~~v~~~~ 186 (258)
T PRK01683 166 PPPHAYYDALAP-AACRVDIWH 186 (258)
T ss_pred CCHHHHHHHHHh-CCCceeeee
Confidence 788888887776 577764433
No 57
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=2.7e-16 Score=166.17 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=121.3
Q ss_pred HHHHHHcCC-CCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCC
Q 038410 605 SLLIEKARV-NKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVK 681 (850)
Q Consensus 605 ~~~~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~ 681 (850)
+.+++.+.+ +++.+|||||||+|.++..+++. ++.+|+++|+|++|++.|+++... .+++++.+|+.+++ +++
T Consensus 102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~ 177 (340)
T PLN02490 102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTD 177 (340)
T ss_pred HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCC
Confidence 345666555 46889999999999999999887 568999999999999999987642 26889999999888 668
Q ss_pred CccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCcccccccccc-CCCCCCCHHHHHHHHh
Q 038410 682 KYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVF-PGGCLPSLNRITSAMT 760 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~~~ 760 (850)
+||+|++..+++|+++ ....+++++++|||||++++.....+.. |..++.- .....++.+++.+.++
T Consensus 178 sFDvVIs~~~L~~~~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~~----------~~~r~~~~~~~~~~t~eEl~~lL~ 245 (340)
T PLN02490 178 YADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACLIGPVHPTF----------WLSRFFADVWMLFPKEEEYIEWFT 245 (340)
T ss_pred ceeEEEEcChhhhCCC--HHHHHHHHHHhcCCCcEEEEEEecCcch----------hHHHHhhhhhccCCCHHHHHHHHH
Confidence 9999999999999965 6889999999999999998865443321 1111100 0123478899988887
Q ss_pred cCCceEEEEeeecCCcH
Q 038410 761 SSSRLCVEHLENIGIHF 777 (850)
Q Consensus 761 ~~~gf~v~~~~~~~~~y 777 (850)
+ +||+.+.+++++..+
T Consensus 246 ~-aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 246 K-AGFKDVKLKRIGPKW 261 (340)
T ss_pred H-CCCeEEEEEEcChhh
Confidence 6 799999988876643
No 58
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.69 E-value=1.5e-16 Score=138.85 Aligned_cols=94 Identities=28% Similarity=0.476 Sum_probs=83.6
Q ss_pred EEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecchhhhChh
Q 038410 620 LEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEMIENVGHE 698 (850)
Q Consensus 620 LDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~ 698 (850)
||||||.|..+..++++++.+|+|+|+|+++++.++++.... +++++++|..+++ ++++||+|++..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c
Confidence 899999999999999987889999999999999999987643 5679999999999 88999999999999999 6
Q ss_pred hHHHHHHHHHhccccCeEEEE
Q 038410 699 YIEEFFGCCESLLAEHGLLLL 719 (850)
Q Consensus 699 ~~~~~~~~~~r~LkpgG~~~~ 719 (850)
++..+++++.|+|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 689999999999999999986
No 59
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.68 E-value=2e-15 Score=145.32 Aligned_cols=147 Identities=19% Similarity=0.209 Sum_probs=109.6
Q ss_pred HHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccE
Q 038410 606 LLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDT 685 (850)
Q Consensus 606 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~ 685 (850)
.+++.+..-++.++||+|||.|+.+.++|++ |..|+++|+|+..++.+++.+++.++ .|+..+.|+.+...++.||+
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhccccCCcCE
Confidence 4555566556679999999999999999998 99999999999999999999999998 59999999988775578999
Q ss_pred EEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhcCCce
Q 038410 686 IISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRL 765 (850)
Q Consensus 686 v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf 765 (850)
|+|..++.|+..+..+.+++.+.+.++|||++++.+....+ .+.. ..+ ...+....++.+.. .++
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~-d~p~---~~~--------~~f~~~~~EL~~~y---~dW 162 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETP-DYPC---PSP--------FPFLLKPGELREYY---ADW 162 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--S-SS-----SS----------S--B-TTHHHHHT---TTS
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccC-CCCC---CCC--------CCcccCHHHHHHHh---CCC
Confidence 99999999999999999999999999999999997765322 1111 111 12334566776553 478
Q ss_pred EEEEe
Q 038410 766 CVEHL 770 (850)
Q Consensus 766 ~v~~~ 770 (850)
++...
T Consensus 163 ~il~y 167 (192)
T PF03848_consen 163 EILKY 167 (192)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 87664
No 60
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.67 E-value=6e-16 Score=147.63 Aligned_cols=107 Identities=30% Similarity=0.573 Sum_probs=96.6
Q ss_pred CCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCC--CCCccEEEEe
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPE--VKKYDTIISC 689 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~--~~~fD~v~s~ 689 (850)
+.+.+|||+|||+|.++..++++ ++.+++|+|+|+++++.|++++++.+++ +++|+++|+.+++. .++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 46789999999999999999953 6889999999999999999999999988 89999999999772 2799999999
Q ss_pred cchhhhChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 690 EMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
.+++|+++ +..+++++.++|||+|.+++.++.
T Consensus 81 ~~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD--PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999954 789999999999999999998776
No 61
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.67 E-value=8.8e-16 Score=157.94 Aligned_cols=216 Identities=16% Similarity=0.230 Sum_probs=140.4
Q ss_pred CchHHHHHhhhhccCCCh-HHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcC---CCCCCeEEEEccCccHH
Q 038410 554 NTLAQARRNISHHYDVSN-ELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKAR---VNKGLDVLEIGCGWGTL 629 (850)
Q Consensus 554 ~~~~~~~~~i~~~Yd~~~-~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~---~~~~~~vLDiGcG~G~~ 629 (850)
++....+..|..+||... +.+... |+.+....-...+.....+..+.+++.+. ..++.+|||||||+|.+
T Consensus 4 ~~~~~~~~~v~~~~~~~~~~~w~~~------y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~ 77 (230)
T PRK07580 4 FNYLEHKSEVRTYFNRTGFDRWARI------YSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSL 77 (230)
T ss_pred hhhhhchhhhhHHHhhhccchHHHh------hCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHH
Confidence 344566777778887422 333332 22221111111122222333344444443 46788999999999999
Q ss_pred HHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhhhChhhHHHHHHHHHh
Q 038410 630 AIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIENVGHEYIEEFFGCCES 709 (850)
Q Consensus 630 ~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r 709 (850)
+..+++. +.+|+|+|+|+++++.|+++....++.+++++..+|+... +++||+|++..+++|++++....+++++.+
T Consensus 78 ~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~ 154 (230)
T PRK07580 78 SIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLIHYPQEDAARMLAHLAS 154 (230)
T ss_pred HHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhhcCCHHHHHHHHHHHHh
Confidence 9999987 7899999999999999999998888767899999995433 478999999999999988888899999999
Q ss_pred ccccCeEEEEEEecCCCCcCCCCcCcccccccc-----ccCCCCCCCHHHHHHHHhcCCceEEEEeeecCC-cHHHHHHH
Q 038410 710 LLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEY-----VFPGGCLPSLNRITSAMTSSSRLCVEHLENIGI-HFYQTLRC 783 (850)
Q Consensus 710 ~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~-~y~~tl~~ 783 (850)
++++++.+.+.. . .... ....++.+. .-+.....+..++.+.+.. +||++.....+.. +|..++.+
T Consensus 155 ~~~~~~~i~~~~--~-~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gf~~~~~~~~~~~~~~~~~~~ 226 (230)
T PRK07580 155 LTRGSLIFTFAP--Y-TPLL----ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAA-AGFKVVRTERISSGFYFSRLLE 226 (230)
T ss_pred hcCCeEEEEECC--c-cHHH----HHHHHhccccCCccCCCCccccCHHHHHHHHHH-CCCceEeeeeccchhHHHHHHH
Confidence 876555433211 1 0000 000111111 0112334567788777765 7999998877644 56677777
Q ss_pred HHH
Q 038410 784 WRT 786 (850)
Q Consensus 784 w~~ 786 (850)
|.+
T Consensus 227 ~~~ 229 (230)
T PRK07580 227 AVR 229 (230)
T ss_pred Hhh
Confidence 654
No 62
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.67 E-value=8.3e-16 Score=157.45 Aligned_cols=189 Identities=24% Similarity=0.324 Sum_probs=138.4
Q ss_pred HHHHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc
Q 038410 558 QARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT 637 (850)
Q Consensus 558 ~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~ 637 (850)
..+..|++|||..|..+..+.. ....+.+++.+...++.+|||+|||+|.++..+++..
T Consensus 3 ~~~~~~~~~y~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~ 61 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLLSFGLH---------------------RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSA 61 (223)
T ss_pred hHHHHHHhhhhHHHHHHhcccH---------------------HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhc
Confidence 4577899999988777653221 2233466666666788999999999999999999884
Q ss_pred C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhccccC
Q 038410 638 G--CKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEH 714 (850)
Q Consensus 638 ~--~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~Lkpg 714 (850)
. ++++++|+|+.+++.++++.. ..++++++.+|+.+.+ ++++||+|++..+++|+. ++..+++++.++||||
T Consensus 62 ~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~g 136 (223)
T TIGR01934 62 PDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVT--DIQKALREMYRVLKPG 136 (223)
T ss_pred CCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCC
Confidence 3 699999999999999998875 3457999999998887 557899999999999985 4789999999999999
Q ss_pred eEEEEEEecCCCCcCCCCcCccccccccccC------------------C-CCCCCHHHHHHHHhcCCceEEEEeeecCC
Q 038410 715 GLLLLQFSSVPDQCYDGHRLSPGFITEYVFP------------------G-GCLPSLNRITSAMTSSSRLCVEHLENIGI 775 (850)
Q Consensus 715 G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p------------------~-~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 775 (850)
|++++.++..+.... ......+....++| . ..+++..++...+.+ +||++...+.+..
T Consensus 137 G~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-aGf~~~~~~~~~~ 213 (223)
T TIGR01934 137 GRLVILEFSKPANAL--LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKE-AGFEEVRYRSLTF 213 (223)
T ss_pred cEEEEEEecCCCchh--hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHH-cCCccceeeeeec
Confidence 999998775443211 00000010011100 0 124577788777775 7999888776654
No 63
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.67 E-value=1.2e-15 Score=155.19 Aligned_cols=167 Identities=17% Similarity=0.264 Sum_probs=126.0
Q ss_pred HHHHHHHHHcC--CCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCC
Q 038410 602 RKVSLLIEKAR--VNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPE 679 (850)
Q Consensus 602 ~~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~ 679 (850)
...+.+++.+. +.++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|++++...+..+++++.++|+.+++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence 44455666665 567899999999999999999987 88999999999999999999988777678999999998876
Q ss_pred CCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCcccccccc-----ccCCCCCCCHHH
Q 038410 680 VKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEY-----VFPGGCLPSLNR 754 (850)
Q Consensus 680 ~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~p~~~~~~~~~ 754 (850)
++||+|++..+++|++.++...+++++.+++++++.+.+... .... ....++... ..+....++..+
T Consensus 118 -~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
T TIGR02021 118 -GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK---TAWL----AFLKMIGELFPGSSRATSAYLHPMTD 189 (219)
T ss_pred -CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC---chHH----HHHHHHHhhCcCcccccceEEecHHH
Confidence 789999999999999877889999999999998766654211 1100 000111111 011224567888
Q ss_pred HHHHHhcCCceEEEEeeecCCcHHH
Q 038410 755 ITSAMTSSSRLCVEHLENIGIHFYQ 779 (850)
Q Consensus 755 ~~~~~~~~~gf~v~~~~~~~~~y~~ 779 (850)
+.+.+.+ +||++...+.....+..
T Consensus 190 ~~~~l~~-~Gf~v~~~~~~~~~~~~ 213 (219)
T TIGR02021 190 LERALGE-LGWKIVREGLVSTGFYN 213 (219)
T ss_pred HHHHHHH-cCceeeeeecccccchh
Confidence 8777765 79999998876655543
No 64
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.67 E-value=1.6e-15 Score=172.16 Aligned_cols=189 Identities=14% Similarity=0.141 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCccee
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRYV 291 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~~ 291 (850)
..++.+|++.+++.|++|+.+++|++|+. ++.+.|+|.+| ++.||+||+|++++.. .+++. ... .+...
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~-~l~~~-----~~~---~~~p~ 251 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA-SHFPQ-----FER---SIAIV 251 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc-ccChh-----hcC---eEEEe
Confidence 47899999999999999999999999985 45578888888 5999999999998743 22211 000 00000
Q ss_pred ecEEEEecCC-------CCCCCCCCCceee----eecccCCCceEEEEeccc------cCC-CCC------CCCceEEec
Q 038410 292 YRDVFLHRDK-------NFMPQNPAAWSAW----NFVGSTNGKICLTYCLNV------LQN-IGE------TSMPFLATL 347 (850)
Q Consensus 292 ~~~v~l~~d~-------~~~p~~~~~~~s~----~~~~~~~~~~~~~~~~~~------l~~-l~~------~~~~~~~~l 347 (850)
...+ +.+++ ..+|......+.. .+...+++..++...... ... ... .+.+.+..+
T Consensus 252 ~~~~-~~t~pl~~~~~~~~~~~~~~~~d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 330 (460)
T TIGR03329 252 SSDM-VITEPAPDLLAATGLDHGTSVLDSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQPSPYEALLTRSLRKF 330 (460)
T ss_pred ccce-EecCCCcHHHHhhcCCCCceEecchhhhhheeECCCCcEEEcCCccccccCcccccccCCchHHHHHHHHHHHHh
Confidence 0111 11111 0111111111110 111123333333211000 000 000 001111112
Q ss_pred CCCCCCccceeeEEeccCCCChHHHHHHHHhhhhcCCCCeEEEccccCCCCCcchhhHHHHHHHHhcccc
Q 038410 348 NPDRTPQNTLLKWSTGHSVPSVAASKASLELHLIQGKRGIWYSGVDQGYGFPEDGLKVGMIAAHGVLGKS 417 (850)
Q Consensus 348 ~~~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~A~~sG~~aA~~ilg~~ 417 (850)
.|......+...|....|. +.+..+.+....+.+|+|+|.+|+|+|+ -.+..+|+.+|+.|+|.+
T Consensus 331 fP~L~~~~i~~~W~G~~~~----t~D~~P~iG~~~~~~gl~~a~G~~G~Gv-~~a~~~G~~lA~li~g~~ 395 (460)
T TIGR03329 331 FPALAEVPIAASWNGPSDR----SVTGLPFFGRLNGQPNVFYGFGYSGNGV-APSRMGGQILSSLVLGLD 395 (460)
T ss_pred CCCcCCCeeeEEEeceeCC----CCCCCceeeeecCCCCEEEEeCcCCCCh-hHHHHHHHHHHHHhcCCC
Confidence 2222222345567665542 2334445554555689999999999999 699999999999999864
No 65
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.67 E-value=1.4e-15 Score=157.69 Aligned_cols=167 Identities=20% Similarity=0.264 Sum_probs=127.3
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CC
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EV 680 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~ 680 (850)
...++..+...++.+|||||||+|.++..+++.. .++++++|+|+++++.+++++...++..+++++.+|+.+.+ +.
T Consensus 40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 3466677777788999999999999999999884 48999999999999999999887667678999999998877 55
Q ss_pred CCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccc-------cCC-------
Q 038410 681 KKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYV-------FPG------- 746 (850)
Q Consensus 681 ~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~p~------- 746 (850)
++||+|++..+++|+. ++..+++++.++|+|||++++.++..+.... ......+....+ +.+
T Consensus 120 ~~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 120 NSFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPP--LKKAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CCccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchH--HHHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 7899999999999995 4789999999999999999998776544321 000000000000 000
Q ss_pred -----CCCCCHHHHHHHHhcCCceEEEEeeecCC
Q 038410 747 -----GCLPSLNRITSAMTSSSRLCVEHLENIGI 775 (850)
Q Consensus 747 -----~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 775 (850)
..+++..++...+.+ +||++..+..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~-aGf~~~~~~~~~~ 228 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEE-AGFERVRYRNLTG 228 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHh-CCCceeeeeeeec
Confidence 234677888777775 7999988877644
No 66
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.67 E-value=9.9e-16 Score=159.40 Aligned_cols=164 Identities=16% Similarity=0.153 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC
Q 038410 599 AQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP 678 (850)
Q Consensus 599 aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~ 678 (850)
.|+...+.+++.+...++.+|||||||+|.++..+++. +++|+++|+|++|++.|+++.. .+.++++|+++++
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~ 98 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLP 98 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCc
Confidence 45666678888887777889999999999999999886 8999999999999999988742 3578899999888
Q ss_pred -CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCcccccccc-ccCCCCCCCHHHHH
Q 038410 679 -EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEY-VFPGGCLPSLNRIT 756 (850)
Q Consensus 679 -~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~p~~~~~~~~~~~ 756 (850)
++++||+|+|+.++++++ ++..+++++.++|||||.+++.++...... +... .|..-. ......+++..++.
T Consensus 99 ~~~~~fD~V~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--el~~--~~~~~~~~~~~~~~~~~~~l~ 172 (251)
T PRK10258 99 LATATFDLAWSNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLVQGSLP--ELHQ--AWQAVDERPHANRFLPPDAIE 172 (251)
T ss_pred CCCCcEEEEEECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCCCCchH--HHHH--HHHHhccCCccccCCCHHHHH
Confidence 667999999999999984 479999999999999999999876543211 1110 010000 01123467888888
Q ss_pred HHHhcCCceEEEEeeecCCcH
Q 038410 757 SAMTSSSRLCVEHLENIGIHF 777 (850)
Q Consensus 757 ~~~~~~~gf~v~~~~~~~~~y 777 (850)
..+.. .++.. +.+.+...|
T Consensus 173 ~~l~~-~~~~~-~~~~~~~~f 191 (251)
T PRK10258 173 QALNG-WRYQH-HIQPITLWF 191 (251)
T ss_pred HHHHh-CCcee-eeeEEEEEC
Confidence 77764 57764 444444444
No 67
>PRK08317 hypothetical protein; Provisional
Probab=99.66 E-value=1.2e-14 Score=150.72 Aligned_cols=115 Identities=21% Similarity=0.311 Sum_probs=101.1
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCC
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVK 681 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~ 681 (850)
+.+++.+.++++.+|||||||+|.++..+++.. +++|+|+|+|+.+++.++++.. ....++++...|+.+.+ +++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~~~ 86 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPFPDG 86 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCCCCC
Confidence 567788899999999999999999999999873 5799999999999999998833 33458999999998877 568
Q ss_pred CccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 682 KYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
+||.|++..+++|+. ++..+++++.++|||||.+++.++.
T Consensus 87 ~~D~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 87 SFDAVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CceEEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 999999999999995 4799999999999999999997754
No 68
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.65 E-value=5.3e-15 Score=156.30 Aligned_cols=139 Identities=17% Similarity=0.224 Sum_probs=111.6
Q ss_pred CCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhh
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIEN 694 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~ 694 (850)
++.+|||||||+|.++.++++. |++|+|+|+|+++++.++++++..++ ++++...|+.+...+++||+|+++.+++|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhh
Confidence 4459999999999999999997 89999999999999999999998888 78999999877655578999999999999
Q ss_pred hChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhcCCceEEEEee
Q 038410 695 VGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRLCVEHLE 771 (850)
Q Consensus 695 ~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~ 771 (850)
++.++...+++++.++|||||++++......+.. ... .|.....+..++.+.+. +|++...+
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~----~~~--------~p~~~~~~~~el~~~~~---~~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY----PCP--------MPFSFTFKEGELKDYYQ---DWEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC----CCC--------CCCCcccCHHHHHHHhC---CCEEEEEe
Confidence 9877899999999999999999777543322111 000 12234567788876653 58888774
No 69
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.65 E-value=1.6e-15 Score=159.76 Aligned_cols=155 Identities=17% Similarity=0.201 Sum_probs=118.8
Q ss_pred cCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEE
Q 038410 611 ARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTII 687 (850)
Q Consensus 611 l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~ 687 (850)
..++++++|||||||+|..+..+++.. ..+|+|+|+|+++++.|+++....++. +++++.+|+.+++ ++++||+|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE
Confidence 457899999999999999988888763 358999999999999999999888875 8999999999888 667999999
Q ss_pred EecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhcCCceEE
Q 038410 688 SCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRLCV 767 (850)
Q Consensus 688 s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v 767 (850)
++.+++|+++ ...++++++++|||||++++.++................ +..-.+...+..++.+.+.+ +||..
T Consensus 152 ~~~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~l~~-aGf~~ 225 (272)
T PRK11873 152 SNCVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAEL---YAGCVAGALQEEEYLAMLAE-AGFVD 225 (272)
T ss_pred EcCcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHH---HhccccCCCCHHHHHHHHHH-CCCCc
Confidence 9999999864 688999999999999999998876543211111100000 10001234567788777775 79998
Q ss_pred EEeee
Q 038410 768 EHLEN 772 (850)
Q Consensus 768 ~~~~~ 772 (850)
+.+..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 77654
No 70
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.65 E-value=1.8e-15 Score=156.30 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=99.8
Q ss_pred CCCCCeEEEEccCccHHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEe
Q 038410 613 VNKGLDVLEIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISC 689 (850)
Q Consensus 613 ~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~ 689 (850)
++++.+|||||||+|..+..+++. ++++|+|+|+|++|++.|++++...++..+++++++|+.+++. ..||+|+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence 467889999999999999998872 6899999999999999999999988888789999999998874 359999999
Q ss_pred cchhhhChhhHHHHHHHHHhccccCeEEEEEEecC
Q 038410 690 EMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSV 724 (850)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~ 724 (850)
.+++|++++....++++++++|||||.+++.+...
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 99999987778899999999999999999987543
No 71
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.64 E-value=5.2e-15 Score=158.45 Aligned_cols=159 Identities=16% Similarity=0.270 Sum_probs=125.2
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCC
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKK 682 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~ 682 (850)
.+.+++.++++++.+|||||||+|.+++.++++ ++++++++|+ +++++.+++++++.|+.++++++.+|+.+.+. ..
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-~~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-PE 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-CC
Confidence 356777888889999999999999999999998 7899999998 78999999999999999999999999876542 24
Q ss_pred ccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCC------CCCCHHHHH
Q 038410 683 YDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGG------CLPSLNRIT 756 (850)
Q Consensus 683 fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~------~~~~~~~~~ 756 (850)
+|+|++..++++.+++....+++++++.|||||++++.++..++.....+ .++..++.+.+ ...+..++.
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~ 291 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNF----DYLSHYILGAGMPFSVLGFKEQARYK 291 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchh----hHHHHHHHHcccccccccCCCHHHHH
Confidence 79999999999998776788999999999999999999987654322111 12233322221 233467787
Q ss_pred HHHhcCCceEEEE
Q 038410 757 SAMTSSSRLCVEH 769 (850)
Q Consensus 757 ~~~~~~~gf~v~~ 769 (850)
+.+.+ +||+.+.
T Consensus 292 ~ll~~-aGf~~v~ 303 (306)
T TIGR02716 292 EILES-LGYKDVT 303 (306)
T ss_pred HHHHH-cCCCeeE
Confidence 77765 7998654
No 72
>PRK05785 hypothetical protein; Provisional
Probab=99.63 E-value=2.1e-15 Score=152.91 Aligned_cols=137 Identities=17% Similarity=0.245 Sum_probs=101.9
Q ss_pred HHHHHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh
Q 038410 557 AQARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ 636 (850)
Q Consensus 557 ~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~ 636 (850)
+...+.++.+||..|.+.+...+.. | .++.++.+.... .++.+|||||||+|.++..+++.
T Consensus 12 ~~~f~~iA~~YD~~n~~~s~g~~~~-------w----------r~~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~~~ 72 (226)
T PRK05785 12 QEAYNKIPKAYDRANRFISFNQDVR-------W----------RAELVKTILKYC--GRPKKVLDVAAGKGELSYHFKKV 72 (226)
T ss_pred HHHHHhhhHHHHHhhhhccCCCcHH-------H----------HHHHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHHHh
Confidence 4567789999998777654322211 0 111222222222 34789999999999999999987
Q ss_pred cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCe
Q 038410 637 TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHG 715 (850)
Q Consensus 637 ~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG 715 (850)
.+.+|+|+|+|++|++.|+++ ..++++|++++| ++++||+|++..+++|+. +++..+++++|+|||.
T Consensus 73 ~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~--d~~~~l~e~~RvLkp~- 140 (226)
T PRK05785 73 FKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHASD--NIEKVIAEFTRVSRKQ- 140 (226)
T ss_pred cCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhccC--CHHHHHHHHHHHhcCc-
Confidence 567999999999999999864 135789999998 789999999999999994 5799999999999993
Q ss_pred EEEEEEecCC
Q 038410 716 LLLLQFSSVP 725 (850)
Q Consensus 716 ~~~~~~~~~~ 725 (850)
+.+.++..+
T Consensus 141 -~~ile~~~p 149 (226)
T PRK05785 141 -VGFIAMGKP 149 (226)
T ss_pred -eEEEEeCCC
Confidence 333344444
No 73
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.62 E-value=2.1e-14 Score=143.41 Aligned_cols=148 Identities=17% Similarity=0.167 Sum_probs=113.0
Q ss_pred HHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCCEEEEEc
Q 038410 607 LIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGL--------------QDHIRLYLC 672 (850)
Q Consensus 607 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl--------------~~~v~~~~~ 672 (850)
.++.+.+.++.+|||+|||.|..+.++|++ |.+|+|||+|+.+++.+.+. +++ ..+|+++++
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEc
Confidence 344444467789999999999999999998 99999999999999986432 222 236899999
Q ss_pred ccCCCCC--CCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCC
Q 038410 673 DYRQMPE--VKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLP 750 (850)
Q Consensus 673 D~~~~~~--~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~ 750 (850)
|+.+++. .++||.|+-..+++|++.+....+++.+.++|||||++++.++....... .. | .+..
T Consensus 102 D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~----~g---------p-p~~~ 167 (213)
T TIGR03840 102 DFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM----AG---------P-PFSV 167 (213)
T ss_pred cCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC----CC---------c-CCCC
Confidence 9998872 46899999999999999988999999999999999998887776432211 00 1 1345
Q ss_pred CHHHHHHHHhcCCceEEEEeeecC
Q 038410 751 SLNRITSAMTSSSRLCVEHLENIG 774 (850)
Q Consensus 751 ~~~~~~~~~~~~~gf~v~~~~~~~ 774 (850)
+..++.+.+.. +|+++.++...
T Consensus 168 ~~~eL~~~f~~--~~~i~~~~~~~ 189 (213)
T TIGR03840 168 SPAEVEALYGG--HYEIELLESRD 189 (213)
T ss_pred CHHHHHHHhcC--CceEEEEeecc
Confidence 77888776642 57777666543
No 74
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.62 E-value=1.2e-15 Score=147.45 Aligned_cols=137 Identities=21% Similarity=0.319 Sum_probs=102.4
Q ss_pred CCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecc
Q 038410 613 VNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEM 691 (850)
Q Consensus 613 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~ 691 (850)
.+++.+|||||||.|.++..+++. +.+|+|+|+|+.+++. .++.....+..+.. ++++||+|+++.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 578899999999999999999887 8899999999999988 13344443333332 5689999999999
Q ss_pred hhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCcccccccccc---CCCCCCCHHHHHHHHhcCCceEEE
Q 038410 692 IENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVF---PGGCLPSLNRITSAMTSSSRLCVE 768 (850)
Q Consensus 692 ~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---p~~~~~~~~~~~~~~~~~~gf~v~ 768 (850)
++|++ ++..+++++.++|||||++++.++......... ...| .+.. ....+.+.+++...+++ +||+++
T Consensus 88 l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~ll~~-~G~~iv 159 (161)
T PF13489_consen 88 LEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRS---FLKW--RYDRPYGGHVHFFSPDELRQLLEQ-AGFEIV 159 (161)
T ss_dssp GGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHH---HHHC--CGTCHHTTTTEEBBHHHHHHHHHH-TTEEEE
T ss_pred Hhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhH---HHhc--CCcCccCceeccCCHHHHHHHHHH-CCCEEE
Confidence 99996 589999999999999999999988754210000 0001 1111 12345688899887776 799987
Q ss_pred E
Q 038410 769 H 769 (850)
Q Consensus 769 ~ 769 (850)
+
T Consensus 160 ~ 160 (161)
T PF13489_consen 160 E 160 (161)
T ss_dssp E
T ss_pred E
Confidence 5
No 75
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.62 E-value=1e-14 Score=134.25 Aligned_cols=116 Identities=19% Similarity=0.231 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP- 678 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~- 678 (850)
+.....+++.+.+.++++|||||||+|.++..++++ ++++|+++|+|+.+++.++++++..++. +++++..|+.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 5 REVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh
Confidence 344456788888888899999999999999999998 5689999999999999999999888876 7899999977532
Q ss_pred -CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEe
Q 038410 679 -EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 679 -~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
..++||.|++.....+ ..++++++.++|||||++++..+
T Consensus 84 ~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hhcCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEEec
Confidence 3368999999775543 46899999999999999999765
No 76
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.62 E-value=2e-14 Score=160.00 Aligned_cols=233 Identities=13% Similarity=0.185 Sum_probs=139.4
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCeEEEEecCCCCCCcceEEe--eCCeeeecceeeccCCCchHHHHHHHHcCCC
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKA----GVEVVLYEKEDSLGGHAKTVT--IDGVDLDIGFMLFNHVEYPNMMEFLESLGVD 74 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~----G~~V~VlEa~~~~GG~~~s~~--~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~ 74 (850)
|+|+|||||+||||||++|++. |.+|+|||+++.+||++.+.. .+|+.++.|... ...+.+++++++.+.-.
T Consensus 23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~--~~~y~~l~~ll~~ipsl 100 (576)
T PRK13977 23 KKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM--ENHFECLWDLFRSIPSL 100 (576)
T ss_pred CeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc--cchHHHHHHHHHhcccc
Confidence 5899999999999999999996 679999999999999998755 579999888764 57889999999887321
Q ss_pred ccc-cc-c-ee-------------eEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcC
Q 038410 75 MGT-SD-M-SF-------------SVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELEN 138 (850)
Q Consensus 75 ~~~-~~-~-~~-------------~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (850)
..+ .. . .+ .+...+|..+.... .++ ....... +.++.. .
T Consensus 101 e~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~~~-~~L----------~~k~r~~----Ll~l~l----------~ 155 (576)
T PRK13977 101 EDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDTDK-FGL----------SKKDRKE----LLKLLL----------T 155 (576)
T ss_pred CCCCcccccceeeeecCCcccceeeEEcCCCCEEECcC-CCC----------CHHHHHH----HHHHhc----------c
Confidence 110 00 0 00 11111111111000 000 0011111 111111 1
Q ss_pred CCCCCCCCcHHHHHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH-Hhhhc---CCCcEEEecC--ChH
Q 038410 139 SPDIDRNETLGHFIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR-LFQLF---GHPQCVTVRR--HSH 212 (850)
Q Consensus 139 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~---~~~~~~~~~g--G~~ 212 (850)
.....++.++.+|+.+..+...| ..++.++ ++-. . -+|+.-+..|+. .+..+ ....-..... =..
T Consensus 156 ~e~~Ld~~tI~d~f~~~Ff~t~F-w~~w~t~----FaF~-~---whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqye 226 (576)
T PRK13977 156 PEEKLDDKTIEDWFSPEFFETNF-WYYWRTM----FAFE-K---WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYE 226 (576)
T ss_pred CHHHhCCcCHHHHHhhcCchhHH-HHHHHHH----HCCc-h---hhHHHHHHHHHHHHHHhhccCCccccccCCCCCchh
Confidence 11112678999999987665544 3344443 3322 1 226666666654 21211 1111111222 226
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEec--CC-c-e-EEEee-CCc-----EEeCCEEEEecChHHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPA--DE-G-C-SIVCV-NGS-----QEFYNGCVMAVHAPDA 269 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~--~~-~-v-~V~~~-~G~-----~i~ad~VV~A~p~~~~ 269 (850)
+++..|.+.|+++|++|++|++|++|..+ ++ + | .|... +|+ ....|.||+|++....
T Consensus 227 SLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 227 SLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 89999999999999999999999999985 32 2 3 34443 332 2458999999876543
No 77
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.61 E-value=9.6e-15 Score=142.28 Aligned_cols=102 Identities=21% Similarity=0.308 Sum_probs=90.4
Q ss_pred CCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecc
Q 038410 613 VNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEM 691 (850)
Q Consensus 613 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~ 691 (850)
++++.+|||||||+|.++..+++. ++++|+|+|+|+++++.|++++++.+++ +++++++|+.+++..++||+|++..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~- 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRA- 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEcc-
Confidence 345899999999999999999876 7899999999999999999999999986 4999999998877657899999975
Q ss_pred hhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 692 IENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 692 ~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
+ .+++.+++.++++|||||++++..
T Consensus 121 ---~--~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 121 ---V--ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ---c--cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 346899999999999999999853
No 78
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.61 E-value=6.5e-15 Score=155.05 Aligned_cols=149 Identities=24% Similarity=0.353 Sum_probs=106.8
Q ss_pred CCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCEEEEEcccCCCCCCCCccEEEEec
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGL----QDHIRLYLCDYRQMPEVKKYDTIISCE 690 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~v~~~~~D~~~~~~~~~fD~v~s~~ 690 (850)
++.+|||||||+|.+++.++++ |++|+|+|+|++|++.|+++++..+. ..++++...|+.+++ ++||+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~--~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLS--GKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcC--CCcCEEEEcC
Confidence 5789999999999999999997 89999999999999999999876532 236889999987764 7899999999
Q ss_pred chhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCC------CCCCCHHHHHHHHhcCCc
Q 038410 691 MIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPG------GCLPSLNRITSAMTSSSR 764 (850)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~------~~~~~~~~~~~~~~~~~g 764 (850)
+++|++++....+++.+.++ ++||. ++.. . +.... + .....+. ..||+ .++.+.+++.+.+++ +|
T Consensus 221 vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~-~-p~~~~--~-~~l~~~g-~~~~g~~~~~r~y~~s~eel~~lL~~-AG 291 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLASL-AEKRL-IISF-A-PKTLY--Y-DILKRIG-ELFPGPSKATRAYLHAEADVERALKK-AG 291 (315)
T ss_pred EEEecCHHHHHHHHHHHHhh-cCCEE-EEEe-C-CcchH--H-HHHHHHH-hhcCCCCcCceeeeCCHHHHHHHHHH-CC
Confidence 99999876667778888764 55555 4422 1 11110 0 0000011 12333 234578888877775 79
Q ss_pred eEEEEeeecCC
Q 038410 765 LCVEHLENIGI 775 (850)
Q Consensus 765 f~v~~~~~~~~ 775 (850)
|++...+....
T Consensus 292 f~v~~~~~~~~ 302 (315)
T PLN02585 292 WKVARREMTAT 302 (315)
T ss_pred CEEEEEEEeec
Confidence 99987765543
No 79
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.61 E-value=6.4e-15 Score=151.90 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=99.7
Q ss_pred CCCCCeEEEEccCccHHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEe
Q 038410 613 VNKGLDVLEIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISC 689 (850)
Q Consensus 613 ~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~ 689 (850)
+.++.+|||||||+|.++..++++ ++++|+|+|+|++|++.|+++++..+...+++++++|+.+++. ..+|+|++.
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~ 129 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILN 129 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeee
Confidence 357889999999999999999985 5789999999999999999999887766689999999998874 359999999
Q ss_pred cchhhhChhhHHHHHHHHHhccccCeEEEEEEecCC
Q 038410 690 EMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVP 725 (850)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~ 725 (850)
.+++|+++++...++++++++|||||.+++.+....
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 999999887889999999999999999999876543
No 80
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.60 E-value=3.3e-14 Score=160.22 Aligned_cols=202 Identities=8% Similarity=0.096 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEeeCCcEEeCCEEEEecChHHHHHhhcC-CCChHHHHhhcCcc
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCVNGSQEFYNGCVMAVHAPDALRILGN-QATFDETRILGAFR 289 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~-~~~~~~~~~l~~i~ 289 (850)
..++.+|.+.+++.|++|+++++|++|+.+++++ .|++.++ ++.||+||+|++++.. .++.. ....+ +....
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~g~~~p----i~p~r 274 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYST-ALLKPLGVDIP----VYPLK 274 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHhCCCcc----cCCcc
Confidence 5788999999999999999999999999888876 4666655 6999999999998753 22211 00000 00000
Q ss_pred eeecEEEEecCCC-CCCCCCCCcee--eeecccCCCceEEEEecc--ccC-CCCCC----CCceEEecCCCCCCccceee
Q 038410 290 YVYRDVFLHRDKN-FMPQNPAAWSA--WNFVGSTNGKICLTYCLN--VLQ-NIGET----SMPFLATLNPDRTPQNTLLK 359 (850)
Q Consensus 290 ~~~~~v~l~~d~~-~~p~~~~~~~s--~~~~~~~~~~~~~~~~~~--~l~-~l~~~----~~~~~~~l~~~~~~~~~~~~ 359 (850)
...+.+..+.. ..|........ ..+. ..++...+..... ... ..... +.+.+..+-|......+...
T Consensus 275 --g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~ 351 (416)
T PRK00711 275 --GYSLTVPITDEDRAPVSTVLDETYKIAIT-RFDDRIRVGGMAEIVGFDLRLDPARRETLEMVVRDLFPGGGDLSQATF 351 (416)
T ss_pred --ceEEEEecCCCCCCCceeEEecccCEEEe-ecCCceEEEEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcccccccce
Confidence 01111111111 11110000000 0111 1123322221110 000 00000 00011111221112224446
Q ss_pred EEeccCCCChHHHHHHHHhhhhcCCCCeEEEccccCCCCCcchhhHHHHHHHHhccccccccCCCCCcchh
Q 038410 360 WSTGHSVPSVAASKASLELHLIQGKRGIWYSGVDQGYGFPEDGLKVGMIAAHGVLGKSCAILGNPKQMVPS 430 (850)
Q Consensus 360 w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~A~~sG~~aA~~ilg~~~~~~~~p~~~~~~ 430 (850)
|...+|.. .+..+.+... +.+|+|++.++.|+|+ -.|..+|+.+|+.|+|.+ ...+..++.|.
T Consensus 352 w~G~r~~t----~D~~PiIG~~-~~~gl~~a~G~~g~G~-~~ap~~g~~la~li~g~~--~~~~~~~f~~~ 414 (416)
T PRK00711 352 WTGLRPMT----PDGTPIVGAT-RYKNLWLNTGHGTLGW-TMACGSGQLLADLISGRK--PAIDADDLSVA 414 (416)
T ss_pred eeccCCCC----CCCCCEeCCc-CCCCEEEecCCchhhh-hhhhhHHHHHHHHHcCCC--CCCCccccCcc
Confidence 76655521 2222333333 2479999999999999 699999999999999877 33455555554
No 81
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.60 E-value=1.4e-14 Score=161.12 Aligned_cols=207 Identities=11% Similarity=0.026 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCccee
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRYV 291 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~~ 291 (850)
..++..|.+.+++.|++++.+++|++|+.+++++.|++.+| ++.||+||+|++.+.. .+... .. ..+.-.++.
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~-~g----~~~~~~~~~ 217 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTS-KLLSP-LG----IEIPLQPLR 217 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchH-HHhhh-cc----cCCCceEEE
Confidence 47888888888888999999999999999888888888777 6999999999998643 22211 00 000001111
Q ss_pred ecEEEEecCCCC---C-CCCCC-Cce---eeeecccC-C-CceEEEEeccc--cC----CCCC-C-------CCceEEec
Q 038410 292 YRDVFLHRDKNF---M-PQNPA-AWS---AWNFVGST-N-GKICLTYCLNV--LQ----NIGE-T-------SMPFLATL 347 (850)
Q Consensus 292 ~~~v~l~~d~~~---~-p~~~~-~~~---s~~~~~~~-~-~~~~~~~~~~~--l~----~l~~-~-------~~~~~~~l 347 (850)
...+++..+... . +..+. .+. ...|.... . +...+...... .. .... . +.+.+..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (380)
T TIGR01377 218 INVCYWREKEPGSYGVSQAFPCFLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQILRKFVRDH 297 (380)
T ss_pred EEEEEEecCCccccCccCCCCEEEEeCCCCceEecCCCCCCceEEEEeCCCCccCcccccCCCCCCHHHHHHHHHHHHHH
Confidence 111111111110 0 00000 000 00111111 1 11222211110 00 0000 0 00000111
Q ss_pred CCCCCCccceeeEEeccCCCChHHHHHHHHhhhhcCCCCeEEEccccCCCCCcchhhHHHHHHHHhccccccccCCCCCc
Q 038410 348 NPDRTPQNTLLKWSTGHSVPSVAASKASLELHLIQGKRGIWYSGVDQGYGFPEDGLKVGMIAAHGVLGKSCAILGNPKQM 427 (850)
Q Consensus 348 ~~~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~A~~sG~~aA~~ilg~~~~~~~~p~~~ 427 (850)
-|.... .....|...+| + +++..+.|...+..+|||++.++.|+|+ -.|...|+.+|+.|++.+ +..++.++
T Consensus 298 ~P~l~~-~~~~~~~~~~~-~---t~D~~piIg~~p~~~~l~va~G~~g~G~-~~~p~~g~~la~li~~~~--~~~~~~~f 369 (380)
T TIGR01377 298 LPGLNG-EPKKGEVCMYT-N---TPDEHFVIDLHPKYDNVVIGAGFSGHGF-KLAPVVGKILAELAMKLK--PSYDLAIF 369 (380)
T ss_pred CCCCCC-CcceeeEEEec-c---CCCCCeeeecCCCCCCEEEEecCCccce-eccHHHHHHHHHHHhcCC--CCCCcccc
Confidence 111111 11223443333 2 2344555666666789999999999999 699999999999999987 34566666
Q ss_pred chhhhH
Q 038410 428 VPSLME 433 (850)
Q Consensus 428 ~~~~~~ 433 (850)
.|+++.
T Consensus 370 ~~~Rf~ 375 (380)
T TIGR01377 370 SLNRFA 375 (380)
T ss_pred Chhhcc
Confidence 666543
No 82
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.59 E-value=3e-15 Score=131.91 Aligned_cols=95 Identities=24% Similarity=0.543 Sum_probs=83.6
Q ss_pred EEEEccCccHHHHHHHHhc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecc-h
Q 038410 619 VLEIGCGWGTLAIEIVKQT--G--CKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEM-I 692 (850)
Q Consensus 619 vLDiGcG~G~~~~~la~~~--~--~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~-~ 692 (850)
|||+|||+|..+..+++.. + .+++|+|+|+++++.++++.++.+. ++++++.|+.+++ .+++||+|++.+. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999873 3 8999999999999999999988776 8999999999988 6679999999654 9
Q ss_pred hhhChhhHHHHHHHHHhccccCe
Q 038410 693 ENVGHEYIEEFFGCCESLLAEHG 715 (850)
Q Consensus 693 ~~~~~~~~~~~~~~~~r~LkpgG 715 (850)
+|+.++....+++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998
No 83
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.59 E-value=1.3e-14 Score=149.33 Aligned_cols=183 Identities=20% Similarity=0.348 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCC
Q 038410 597 DVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQ 676 (850)
Q Consensus 597 ~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~ 676 (850)
.++..-.++.+...+...++.+|||||||+|.++..+++. +++|+++|+|+++++.+++++...+. ++++...|..+
T Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~ 106 (233)
T PRK05134 30 HRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEE 106 (233)
T ss_pred HHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHH
Confidence 3334444566666666778999999999999999999986 89999999999999999999877665 68888898887
Q ss_pred CC--CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccc----cCCCCCC
Q 038410 677 MP--EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYV----FPGGCLP 750 (850)
Q Consensus 677 ~~--~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~p~~~~~ 750 (850)
.+ ..++||+|++..+++|+++ +..+++.+.++|+|||++++..+......+........++.... .....++
T Consensus 107 ~~~~~~~~fD~Ii~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (233)
T PRK05134 107 LAAEHPGQFDVVTCMEMLEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFI 184 (233)
T ss_pred hhhhcCCCccEEEEhhHhhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcC
Confidence 75 4579999999999999954 78999999999999999998765422110000000000010000 0113456
Q ss_pred CHHHHHHHHhcCCceEEEEeeecCCcHHHHHHHHHHH
Q 038410 751 SLNRITSAMTSSSRLCVEHLENIGIHFYQTLRCWRTN 787 (850)
Q Consensus 751 ~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~ 787 (850)
+..++.+.+.+ +||+++... +.+|.+....|..+
T Consensus 185 ~~~~~~~~l~~-~Gf~~v~~~--~~~~~~~~~~~~~~ 218 (233)
T PRK05134 185 KPSELAAWLRQ-AGLEVQDIT--GLHYNPLTNRWKLS 218 (233)
T ss_pred CHHHHHHHHHH-CCCeEeeee--eEEechhhcceeec
Confidence 78888777775 799998775 45677788888763
No 84
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.59 E-value=3.8e-14 Score=142.87 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=120.3
Q ss_pred HHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCC
Q 038410 603 KVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVK 681 (850)
Q Consensus 603 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~ 681 (850)
|.+++...+..=.|.+|||||||.|.++..++++ |+ .|+|||.+.-.....+...+-.|....+.++-.-+++++..+
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 5577777775456899999999999999999998 65 699999998776665443333344334444445677777568
Q ss_pred CccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccc-cccccCCCCCCCHHHHHHHHh
Q 038410 682 KYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFI-TEYVFPGGCLPSLNRITSAMT 760 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~p~~~~~~~~~~~~~~~ 760 (850)
.||.|+|.++++|. +++-..++++++.|+|||.+++.+...+............+- .+.+ -.+||...+...++
T Consensus 182 ~FDtVF~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv---~FiPs~~~L~~wl~ 256 (315)
T PF08003_consen 182 AFDTVFSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV---WFIPSVAALKNWLE 256 (315)
T ss_pred CcCEEEEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce---EEeCCHHHHHHHHH
Confidence 99999999999999 668999999999999999999998876653221111100010 0111 15799999998888
Q ss_pred cCCceEEEEeeecC
Q 038410 761 SSSRLCVEHLENIG 774 (850)
Q Consensus 761 ~~~gf~v~~~~~~~ 774 (850)
+ +||.-+.+.+..
T Consensus 257 r-~gF~~v~~v~~~ 269 (315)
T PF08003_consen 257 R-AGFKDVRCVDVS 269 (315)
T ss_pred H-cCCceEEEecCc
Confidence 6 799977776654
No 85
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.58 E-value=8.3e-14 Score=139.62 Aligned_cols=147 Identities=20% Similarity=0.218 Sum_probs=112.1
Q ss_pred HHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCCEEEEEc
Q 038410 607 LIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGL--------------QDHIRLYLC 672 (850)
Q Consensus 607 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl--------------~~~v~~~~~ 672 (850)
.+..+.+.++.+|||+|||.|..+.++|++ |++|+|||+|+..++.+.+ +.++ ..+|++.++
T Consensus 29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~ 104 (218)
T PRK13255 29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCG 104 (218)
T ss_pred HHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEEC
Confidence 344445567789999999999999999997 9999999999999998743 2232 247999999
Q ss_pred ccCCCC--CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCC
Q 038410 673 DYRQMP--EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLP 750 (850)
Q Consensus 673 D~~~~~--~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~ 750 (850)
|+.+++ ..+.||.|+...+++|++.+....+++.+.++|||||++++.+........ .. .| +..
T Consensus 105 D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~----~g--------Pp--~~~ 170 (218)
T PRK13255 105 DFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL----AG--------PP--FSV 170 (218)
T ss_pred cccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC----CC--------CC--CCC
Confidence 999886 236899999999999999999999999999999999986665444332111 00 01 245
Q ss_pred CHHHHHHHHhcCCceEEEEeeec
Q 038410 751 SLNRITSAMTSSSRLCVEHLENI 773 (850)
Q Consensus 751 ~~~~~~~~~~~~~gf~v~~~~~~ 773 (850)
+.+++.+.+. .+|+++.++..
T Consensus 171 ~~~el~~~~~--~~~~i~~~~~~ 191 (218)
T PRK13255 171 SDEEVEALYA--GCFEIELLERQ 191 (218)
T ss_pred CHHHHHHHhc--CCceEEEeeec
Confidence 7888877664 24888777654
No 86
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.58 E-value=2.6e-14 Score=139.27 Aligned_cols=99 Identities=19% Similarity=0.300 Sum_probs=87.1
Q ss_pred CCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchh
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIE 693 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~ 693 (850)
++.+|||||||+|.++..++.. ++++|+|+|+|+++++.+++++++.+++ +++++++|+.+++..++||+|++.. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh-hh
Confidence 4789999999999999999876 5689999999999999999999998885 6999999999876567999999976 33
Q ss_pred hhChhhHHHHHHHHHhccccCeEEEEE
Q 038410 694 NVGHEYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 694 ~~~~~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
+ ++.+++.+.++|||||++++.
T Consensus 120 ~-----~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 120 S-----LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred C-----HHHHHHHHHHhcCCCCEEEEE
Confidence 3 567899999999999999974
No 87
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.58 E-value=8.6e-15 Score=137.66 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC
Q 038410 600 QMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP 678 (850)
Q Consensus 600 q~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~ 678 (850)
..+-...++..+.+.+..+|.|+|||.|..+..++++ +++.++|||-|++|++.|+++. + +++|..+|++++.
T Consensus 15 RtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p-~~~f~~aDl~~w~ 88 (257)
T COG4106 15 RTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----P-DATFEEADLRTWK 88 (257)
T ss_pred ccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----C-CCceecccHhhcC
Confidence 3455578889999999999999999999999999999 9999999999999999998874 3 7899999999999
Q ss_pred CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCC----cCcccccccccc---CCCCCCC
Q 038410 679 EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGH----RLSPGFITEYVF---PGGCLPS 751 (850)
Q Consensus 679 ~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~---p~~~~~~ 751 (850)
++..+|+++++-+|+++++ ..+.|..+...|.|||.+.+|....-+...... .....|-..+-- -...+|+
T Consensus 89 p~~~~dllfaNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s 166 (257)
T COG4106 89 PEQPTDLLFANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPS 166 (257)
T ss_pred CCCccchhhhhhhhhhccc--cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCC
Confidence 8889999999999999965 699999999999999999998765433221111 112234322211 1356899
Q ss_pred HHHHHHHHhcCCceEEEEeee
Q 038410 752 LNRITSAMTSSSRLCVEHLEN 772 (850)
Q Consensus 752 ~~~~~~~~~~~~gf~v~~~~~ 772 (850)
+..+.+.+.. .+-+|.-++.
T Consensus 167 ~a~Yy~lLa~-~~~rvDiW~T 186 (257)
T COG4106 167 PAAYYELLAP-LACRVDIWHT 186 (257)
T ss_pred HHHHHHHhCc-ccceeeeeee
Confidence 9999888875 3666655554
No 88
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.57 E-value=3.7e-14 Score=157.65 Aligned_cols=200 Identities=14% Similarity=0.093 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCccee
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRYV 291 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~~ 291 (850)
..++..+.+.+.+.|++++++++|++|+.+++++.|++.+| ++.||+||+|++++.. .++.. . .++..
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~-~l~~~-~---------~~~i~ 216 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK-DLLPP-L---------ELPLT 216 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh-hhccc-c---------cCCce
Confidence 46777788888888999999999999999888889998888 6999999999998753 33321 0 11111
Q ss_pred ec---EEEEecCCCCC-CCCCCCce-----ee-eecc-cCCCc-eEEEEecc-cc----CCC------CC---CCCceEE
Q 038410 292 YR---DVFLHRDKNFM-PQNPAAWS-----AW-NFVG-STNGK-ICLTYCLN-VL----QNI------GE---TSMPFLA 345 (850)
Q Consensus 292 ~~---~v~l~~d~~~~-p~~~~~~~-----s~-~~~~-~~~~~-~~~~~~~~-~l----~~l------~~---~~~~~~~ 345 (850)
+. .+.+..+..+. +.....+. .. .|.. ..++. ..+..... .. ... .+ .+.+.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (376)
T PRK11259 217 PVRQVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPFLR 296 (376)
T ss_pred EEEEEEEEEecCCccCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHHHH
Confidence 11 11111111110 00000000 00 1111 11222 33322111 00 000 00 0000011
Q ss_pred ecCCCCCCccceeeEEeccCCCChHHHHHHHHhhhhcCCCCeEEEccccCCCCCcchhhHHHHHHHHhccccccccCCCC
Q 038410 346 TLNPDRTPQNTLLKWSTGHSVPSVAASKASLELHLIQGKRGIWYSGVDQGYGFPEDGLKVGMIAAHGVLGKSCAILGNPK 425 (850)
Q Consensus 346 ~l~~~~~~~~~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~A~~sG~~aA~~ilg~~~~~~~~p~ 425 (850)
.+-|. ... +...|...+|. +++..+.+......+|+|++.+|.|+|+ -.+...|+.+|+.|++.+ +..++.
T Consensus 297 ~~~P~-~~~-~~~~~~g~~~~----t~D~~P~ig~~~~~~gl~~~~G~~g~G~-~~ap~~g~~la~li~~~~--~~~~~~ 367 (376)
T PRK11259 297 NYLPG-VGP-CLRGAACTYTN----TPDEHFIIDTLPGHPNVLVASGCSGHGF-KFASVLGEILADLAQDGT--SDFDLS 367 (376)
T ss_pred HHCCC-CCc-cccceEEeccc----CCCCCceeecCCCCCCEEEEecccchhh-hccHHHHHHHHHHHhcCC--CCCCcC
Confidence 11121 111 34456665552 2234455555556789999999999999 699999999999999877 445666
Q ss_pred Ccchhhh
Q 038410 426 QMVPSLM 432 (850)
Q Consensus 426 ~~~~~~~ 432 (850)
++.|+++
T Consensus 368 ~~~~~Rf 374 (376)
T PRK11259 368 PFSLSRF 374 (376)
T ss_pred ccCcccc
Confidence 6666643
No 89
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=4.2e-14 Score=141.54 Aligned_cols=111 Identities=19% Similarity=0.299 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-C
Q 038410 603 KVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-E 679 (850)
Q Consensus 603 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~ 679 (850)
....+++.+.++++++|||||||+|..+..+++.. +.+|+++|+++++++.|+++++..++.++++++.+|..+.. .
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 45678888889999999999999999999999873 47999999999999999999999888778999999987754 4
Q ss_pred CCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 680 VKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 680 ~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
.++||+|++...++|++ +++.+.|||||++++..
T Consensus 140 ~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 140 HAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 57899999999988874 35788999999998843
No 90
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.56 E-value=8e-15 Score=117.30 Aligned_cols=67 Identities=46% Similarity=0.842 Sum_probs=60.6
Q ss_pred EECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccC-CCchHHHHHHHHc
Q 038410 5 VIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNH-VEYPNMMEFLESL 71 (850)
Q Consensus 5 IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~-~~~~~~~~l~~~l 71 (850)
|||||++||+||+.|+++|++|+|+|+++++||++++...+|+.+|.|++.+.. ..++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 899999999999999999999999999999999999999999999999999965 3678899999875
No 91
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.56 E-value=2.7e-14 Score=138.45 Aligned_cols=129 Identities=22% Similarity=0.413 Sum_probs=101.7
Q ss_pred eecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 038410 585 SCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGL 663 (850)
Q Consensus 585 s~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl 663 (850)
..++|+.. .++.+..-.++.+... ++.+|||+|||+|.++..++++ +..+|+++|+|+.+++.++++++.+++
T Consensus 7 ~~gvFs~~--~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~ 80 (170)
T PF05175_consen 7 HPGVFSPP--RLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL 80 (170)
T ss_dssp ETTSTTTT--SHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred CCCeeCCC--CCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 46777543 4555554444444433 6789999999999999999998 556899999999999999999999999
Q ss_pred CCCEEEEEcccCCCCCCCCccEEEEecchhhhCh---hhHHHHHHHHHhccccCeEEEEE
Q 038410 664 QDHIRLYLCDYRQMPEVKKYDTIISCEMIENVGH---EYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 664 ~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~~~---~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
++ ++++..|..+..++++||+|+|+..++.-.+ .....+++...+.|||||.+++.
T Consensus 81 ~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 81 EN-VEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp TT-EEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cc-cccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 76 9999999876555689999999988665443 35688999999999999999873
No 92
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.56 E-value=3e-14 Score=134.77 Aligned_cols=118 Identities=18% Similarity=0.259 Sum_probs=94.1
Q ss_pred HHHHHHHHH-HcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCC
Q 038410 601 MRKVSLLIE-KARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPE 679 (850)
Q Consensus 601 ~~~~~~~~~-~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~ 679 (850)
++|.+.++. .|+-..-.++||+|||.|.++..||.+ .-+++++|+|+..++.|++|+.. .+ +|++++.|+.+..+
T Consensus 28 ~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~P 103 (201)
T PF05401_consen 28 RRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFWP 103 (201)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT---
T ss_pred HHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCCC
Confidence 345555554 577677789999999999999999998 56999999999999999999874 33 89999999988778
Q ss_pred CCCccEEEEecchhhhCh-hhHHHHHHHHHhccccCeEEEEEEe
Q 038410 680 VKKYDTIISCEMIENVGH-EYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 680 ~~~fD~v~s~~~~~~~~~-~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
+++||+|+..++++++.+ +++..+++.+...|+|||.+++-..
T Consensus 104 ~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 104 EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 899999999999999975 5788999999999999999999554
No 93
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.55 E-value=3.9e-14 Score=143.30 Aligned_cols=140 Identities=22% Similarity=0.253 Sum_probs=107.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-
Q 038410 602 RKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP- 678 (850)
Q Consensus 602 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~- 678 (850)
..+..+++.+.++++.+|||||||+|.++..+++.. ..+|+++|+++++++.|++++++.++ ++++++++|..+..
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCc
Confidence 345688888899999999999999999999999873 35799999999999999999999998 48999999987754
Q ss_pred CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCC-cCccccccccccCCCCCCC
Q 038410 679 EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGH-RLSPGFITEYVFPGGCLPS 751 (850)
Q Consensus 679 ~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~p~~~~~~ 751 (850)
..++||+|++.....+++ +.+.+.|||||++++.... .......+ +....|..+.+++..++|-
T Consensus 143 ~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pl 207 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPVGE-YLQVLKRAEKRGGEIIIKDVEPVAFVPL 207 (215)
T ss_pred ccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEEcC-CceEEEEEEEeCCEEEEEEeeeEEEEeC
Confidence 446899999987766663 3478889999999985433 22221112 2234466666666555553
No 94
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.55 E-value=1.5e-13 Score=135.94 Aligned_cols=111 Identities=20% Similarity=0.268 Sum_probs=94.2
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCc
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKY 683 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~f 683 (850)
..+++.+.+.++.+|||||||+|.++..+++. ++++|+++|+|+++++.|+++++..++. +++++.+|... +..++|
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~~~~ 98 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELPGKA 98 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcCcCC
Confidence 35667788889999999999999999999987 5689999999999999999999888875 79999998753 223689
Q ss_pred cEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEe
Q 038410 684 DTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 684 D~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
|+|++....++ +..+++.+.++|||||+++++.+
T Consensus 99 D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 99 DAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEe
Confidence 99999876544 46789999999999999998654
No 95
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.55 E-value=4.7e-14 Score=146.69 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=71.0
Q ss_pred CCCcEEEecCChHHHHHHHHHHhhccCceEeeCCceEEEEecCCc-eEEEeeCCcEEeCCEEEEecChHHHH-HhhcCCC
Q 038410 200 GHPQCVTVRRHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-CSIVCVNGSQEFYNGCVMAVHAPDAL-RILGNQA 277 (850)
Q Consensus 200 ~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VV~A~p~~~~~-~ll~~~~ 277 (850)
..+.|.++.|||+.++.++++.++++|++|.+++.|.+|..++++ +.|...||+++++..||+.+.++.+. +|++...
T Consensus 252 ~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~ 331 (561)
T KOG4254|consen 252 HKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA 331 (561)
T ss_pred cCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence 457889999999999999999999999999999999999999876 58999999999999999988777554 8887654
Q ss_pred ChHH
Q 038410 278 TFDE 281 (850)
Q Consensus 278 ~~~~ 281 (850)
.++.
T Consensus 332 LPee 335 (561)
T KOG4254|consen 332 LPEE 335 (561)
T ss_pred CCch
Confidence 4443
No 96
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.55 E-value=6e-14 Score=128.04 Aligned_cols=126 Identities=21% Similarity=0.361 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHcC---CCC-CCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEc
Q 038410 598 VAQMRKVSLLIEKAR---VNK-GLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLC 672 (850)
Q Consensus 598 ~aq~~~~~~~~~~l~---~~~-~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~ 672 (850)
+|+++.++.+.+... +.. ..+|||+|||.|.+...|++. .....+|||.|++.++.|+..+++.++++.|+|.+.
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 467888888887765 333 349999999999999999998 445699999999999999999999999988999999
Q ss_pred ccCCCC-CCCCccEEEEecchhhhC------hhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 673 DYRQMP-EVKKYDTIISCEMIENVG------HEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 673 D~~~~~-~~~~fD~v~s~~~~~~~~------~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
|+.+-. ..++||+|.--+++.+++ ...+..|+..+.++|+|||+++|....
T Consensus 126 DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 126 DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred eccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 998855 568999999888877662 123467899999999999999997654
No 97
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.54 E-value=7.4e-14 Score=138.88 Aligned_cols=122 Identities=11% Similarity=0.174 Sum_probs=98.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEE
Q 038410 593 YEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYL 671 (850)
Q Consensus 593 ~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~ 671 (850)
.+.+..+....+...+.. +.++.+|||||||+|.++..+++. ++++++|||+|+++++.|+++.. ++++.+
T Consensus 23 ~~~~~~~~~~~~~~~l~~--~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~ 94 (204)
T TIGR03587 23 RQSLVAAKLAMFARALNR--LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQ 94 (204)
T ss_pred cHHHHHHHHHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEE
Confidence 344445444555555554 356789999999999999999987 67999999999999999987642 578889
Q ss_pred cccCCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCC
Q 038410 672 CDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVP 725 (850)
Q Consensus 672 ~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~ 725 (850)
+|+.+ + ++++||+|+++++++|++++++..++++++|++ ++.+++.++..+
T Consensus 95 ~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 95 GSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred eeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 99887 5 678999999999999998778899999999998 567777766443
No 98
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.54 E-value=1.9e-13 Score=134.13 Aligned_cols=140 Identities=22% Similarity=0.223 Sum_probs=109.4
Q ss_pred HHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccE
Q 038410 606 LLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDT 685 (850)
Q Consensus 606 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~ 685 (850)
.+.+.+...++.+|||+|||+|.++..+++. +.+|+++|+|+++++.++++++..+. +++++++|..+.. .++||.
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~ 85 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDV 85 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccE
Confidence 3444555566789999999999999999997 55999999999999999999988776 6899999987654 358999
Q ss_pred EEEecchhhhChh-------------------hHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCC
Q 038410 686 IISCEMIENVGHE-------------------YIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPG 746 (850)
Q Consensus 686 v~s~~~~~~~~~~-------------------~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~ 746 (850)
|+++..+++.++. ....+++++.++|||||++++......
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------------------- 144 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------------------- 144 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC---------------------
Confidence 9999888766431 146789999999999999998654322
Q ss_pred CCCCCHHHHHHHHhcCCceEEEEeeecCC
Q 038410 747 GCLPSLNRITSAMTSSSRLCVEHLENIGI 775 (850)
Q Consensus 747 ~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 775 (850)
...++.+.+.+ .||.++.+...+.
T Consensus 145 ----~~~~~~~~l~~-~gf~~~~~~~~~~ 168 (179)
T TIGR00537 145 ----GEPDTFDKLDE-RGFRYEIVAERGL 168 (179)
T ss_pred ----ChHHHHHHHHh-CCCeEEEEEEeec
Confidence 13455566664 6999888776553
No 99
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.53 E-value=7.7e-13 Score=148.61 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=52.7
Q ss_pred cEEEecCCh---HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCC-----cEEeCCEEEEecChHHH
Q 038410 203 QCVTVRRHS---HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNG-----SQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 203 ~~~~~~gG~---~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-----~~i~ad~VV~A~p~~~~ 269 (850)
.++.+.+|. ..++..|.+.+++.|++|+.+++|++|+.++++++|.+.++ .+++||+||+|++++..
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 344444433 56788899999999999999999999998888887765443 36899999999998853
No 100
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.53 E-value=1.4e-15 Score=133.60 Aligned_cols=95 Identities=24% Similarity=0.470 Sum_probs=66.1
Q ss_pred EEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---CCCCccEEEEecchhhh
Q 038410 620 LEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---EVKKYDTIISCEMIENV 695 (850)
Q Consensus 620 LDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---~~~~fD~v~s~~~~~~~ 695 (850)
||||||+|.++..++++ ++.+++|+|+|+.|++.|+++..+.+.. +.+....+..+.. ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999998 7889999999999999999999887643 3444444433332 33699999999999999
Q ss_pred ChhhHHHHHHHHHhccccCeEE
Q 038410 696 GHEYIEEFFGCCESLLAEHGLL 717 (850)
Q Consensus 696 ~~~~~~~~~~~~~r~LkpgG~~ 717 (850)
+++..++++++++|||||++
T Consensus 80 --~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred --hhHHHHHHHHHHHcCCCCCC
Confidence 56899999999999999986
No 101
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.53 E-value=1.3e-14 Score=160.01 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=55.7
Q ss_pred cEEEecCC---hHHHHHHHHHHhhccCceEeeCCceEEEEecCCceE-EEeeCCcEEeCCEEEEecChHHHH
Q 038410 203 QCVTVRRH---SHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCS-IVCVNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 203 ~~~~~~gG---~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~i~ad~VV~A~p~~~~~ 270 (850)
..+.+.+| ...+++.|.+.+++.|++|+.+++|++|..++++|. |++.+|+ +.||+||+|++++...
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 34455566 579999999999999999999999999999999987 9999997 9999999999987543
No 102
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.52 E-value=6.5e-14 Score=130.68 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=97.3
Q ss_pred HcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEE-EEEcccCCCC--CCCCccEE
Q 038410 610 KARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIR-LYLCDYRQMP--EVKKYDTI 686 (850)
Q Consensus 610 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~-~~~~D~~~~~--~~~~fD~v 686 (850)
.++......|||||||+|..-.+.--.++++||++|.++.|-+++.+.++++ .+.+++ |++++.++++ ++++||.|
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~-k~~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK-KPLQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc-cCcceEEEEeechhcCcccccCCeeeE
Confidence 3333333468999999999988877668999999999999999999999887 444777 9999999999 88999999
Q ss_pred EEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecC
Q 038410 687 ISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSV 724 (850)
Q Consensus 687 ~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~ 724 (850)
++..++..+ +++.+.++++.|+|||||++++.+.+.
T Consensus 150 V~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 150 VCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 999999999 678999999999999999999976654
No 103
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.52 E-value=5.6e-13 Score=149.60 Aligned_cols=200 Identities=11% Similarity=0.067 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEec-CCce-EEEeeCCcEEeCCEEEEecChHHHH--HhhcCCCChHHHHhhcC
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPA-DEGC-SIVCVNGSQEFYNGCVMAVHAPDAL--RILGNQATFDETRILGA 287 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~~~~G~~i~ad~VV~A~p~~~~~--~ll~~~~~~~~~~~l~~ 287 (850)
..++.+|++.+.+.|++++.+++|++|+.. ++++ .|++.+| ++.+++||+|+.++... +++....+ .
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~--------~ 253 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLP--------I 253 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCC--------c
Confidence 357778888889999999999999999865 4554 5888888 59999999998877532 22221100 0
Q ss_pred cceeecEEEEecCC--CCCCCCCCCce--eeeecccCCCceEEEEeccccCCCCCC--------CCceEEecCCCCCCcc
Q 038410 288 FRYVYRDVFLHRDK--NFMPQNPAAWS--AWNFVGSTNGKICLTYCLNVLQNIGET--------SMPFLATLNPDRTPQN 355 (850)
Q Consensus 288 i~~~~~~v~l~~d~--~~~p~~~~~~~--s~~~~~~~~~~~~~~~~~~~l~~l~~~--------~~~~~~~l~~~~~~~~ 355 (850)
.++. ..+ +.+++ .+++. ...+. ...+...+++...+............. +.+.+..+-|......
T Consensus 254 ~~~~-~~~-~~~~~~~~~~~~-~~~~~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~ 330 (407)
T TIGR01373 254 ESHP-LQA-LVSEPLKPIIDT-VVMSNAVHFYVSQSDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFPILSRVR 330 (407)
T ss_pred Cccc-ceE-EEecCCCCCcCC-eEEeCCCceEEEEcCCceEEEecCCCCCCccCcCCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 0111 111 11111 11110 00000 011111123333333211100000000 0000011112111222
Q ss_pred ceeeEEeccCCCChHHHHHHHHhhhhcCCCCeEEEccccCCCCCcchhhHHHHHHHHhccccccccCCCCCcchhh
Q 038410 356 TLLKWSTGHSVPSVAASKASLELHLIQGKRGIWYSGVDQGYGFPEDGLKVGMIAAHGVLGKSCAILGNPKQMVPSL 431 (850)
Q Consensus 356 ~~~~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~A~~sG~~aA~~ilg~~~~~~~~p~~~~~~~ 431 (850)
+...|...+|. +.+..+.+...+ .+|+|++.++.|+|+ -.|...|+.+|+.|++.+ +..++.++.|.+
T Consensus 331 ~~~~w~G~~~~----t~D~~PiIg~~~-~~gl~~a~G~~g~G~-~~ap~~G~~la~li~~~~--~~~~~~~f~~~R 398 (407)
T TIGR01373 331 MLRSWGGIVDV----TPDGSPIIGKTP-LPNLYLNCGWGTGGF-KATPASGTVFAHTLARGE--PHDINAPFTLDR 398 (407)
T ss_pred eEEEecccccc----CCCCCceeCCCC-CCCeEEEeccCCcch-hhchHHHHHHHHHHhCCC--CCCCCcccCHhH
Confidence 44567665553 223344444432 579999999999999 599999999999998776 333455555543
No 104
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.52 E-value=2.2e-13 Score=161.49 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=55.2
Q ss_pred cEEEecCCh---HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 203 QCVTVRRHS---HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 203 ~~~~~~gG~---~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.++.+.+|. ..++.+|.+.+++ |++|+.+++|++|+.++++|.|.+.+|..+.||+||+|++++.
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 344555554 5789999999988 9999999999999998888999988887778999999999875
No 105
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.52 E-value=3e-13 Score=134.92 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=95.4
Q ss_pred HHHHHcCCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--CCC
Q 038410 606 LLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--EVK 681 (850)
Q Consensus 606 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--~~~ 681 (850)
..+.++++.++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.++++++..++.++++++.+|..+.. ..+
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 4467889999999999999999999999876 357999999999999999999999987778999999987643 346
Q ss_pred CccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEe
Q 038410 682 KYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
+||.|++... ...+..+++.+.++|||||++++...
T Consensus 111 ~~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 111 KFDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 8999998642 23468899999999999999998544
No 106
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.51 E-value=2.3e-13 Score=146.20 Aligned_cols=131 Identities=13% Similarity=0.219 Sum_probs=106.3
Q ss_pred eecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 038410 585 SCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGL 663 (850)
Q Consensus 585 s~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl 663 (850)
..++|+...-|... +.+++.+....+.+|||+|||+|.+++.++++ ++++|+++|+|+.+++.|+++++.++.
T Consensus 204 ~~gVFs~~~LD~Gt------rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~ 277 (378)
T PRK15001 204 HANVFSRTGLDIGA------RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP 277 (378)
T ss_pred cCCccCCCCcChHH------HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 47899877655544 46777777666679999999999999999988 788999999999999999999988765
Q ss_pred C--CCEEEEEcccCCCCCCCCccEEEEecchhhh---ChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 664 Q--DHIRLYLCDYRQMPEVKKYDTIISCEMIENV---GHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 664 ~--~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~---~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
. ++++++..|..+..++++||+|+|+..++.. .+....++|+.++++|||||.+++..
T Consensus 278 ~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 278 EALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccCceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 3789999997543334689999999887643 33345689999999999999999963
No 107
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=2.2e-13 Score=136.96 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP 678 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~ 678 (850)
-.....+++.+.++++++|||||||+|.++..+++.. +++|+++|+++++++.|+++++..++. +++++++|..+..
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~ 140 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGY 140 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCC
Confidence 4556788899999999999999999999999999873 479999999999999999999988875 7999999987654
Q ss_pred -CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 679 -EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 679 -~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
+.++||+|++...+++++ +.+.+.|||||++++..
T Consensus 141 ~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 141 EENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 557899999988776653 34667899999998843
No 108
>PRK06922 hypothetical protein; Provisional
Probab=99.50 E-value=1.7e-13 Score=153.00 Aligned_cols=112 Identities=20% Similarity=0.300 Sum_probs=95.5
Q ss_pred CCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---CCCCccEEE
Q 038410 612 RVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---EVKKYDTII 687 (850)
Q Consensus 612 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---~~~~fD~v~ 687 (850)
+..++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|+++....+. +++++++|..+++ ++++||+|+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEE
Confidence 3446889999999999999999887 789999999999999999998765553 7889999988875 467999999
Q ss_pred Eecchhhh-----------ChhhHHHHHHHHHhccccCeEEEEEEecCC
Q 038410 688 SCEMIENV-----------GHEYIEEFFGCCESLLAEHGLLLLQFSSVP 725 (850)
Q Consensus 688 s~~~~~~~-----------~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~ 725 (850)
++.+++|+ +.++...++++++++|||||++++.+...+
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 99998875 235678999999999999999999875444
No 109
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.50 E-value=1.5e-13 Score=142.56 Aligned_cols=133 Identities=16% Similarity=0.270 Sum_probs=102.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccH----HHHHHHHh-c-----CCEEEEEeCCHHHHHHHHHH
Q 038410 588 IFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGT----LAIEIVKQ-T-----GCKYTGITLSEEQLKYTETK 657 (850)
Q Consensus 588 ~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~----~~~~la~~-~-----~~~v~gid~s~~~~~~a~~~ 657 (850)
+|-.+...++.-+...+..+++.....++.+|||+|||+|. +++.+++. + +.+|+|+|+|+++++.|++.
T Consensus 72 ~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 72 RFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred cccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 34334445555555555555555445567899999999996 56666664 2 47999999999999999985
Q ss_pred HH----HcC----------------------CCCCEEEEEcccCCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhc
Q 038410 658 VK----EAG----------------------LQDHIRLYLCDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESL 710 (850)
Q Consensus 658 ~~----~~g----------------------l~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~ 710 (850)
+- -.+ +.++|+|.+.|+.+.+ +.++||+|+|..++.|++++....++++++++
T Consensus 152 ~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~ 231 (264)
T smart00138 152 IYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEA 231 (264)
T ss_pred CCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHH
Confidence 31 011 2247899999999877 57899999999999999887888999999999
Q ss_pred cccCeEEEEE
Q 038410 711 LAEHGLLLLQ 720 (850)
Q Consensus 711 LkpgG~~~~~ 720 (850)
|||||.+++.
T Consensus 232 L~pGG~L~lg 241 (264)
T smart00138 232 LKPGGYLFLG 241 (264)
T ss_pred hCCCeEEEEE
Confidence 9999999984
No 110
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.50 E-value=3e-13 Score=139.86 Aligned_cols=155 Identities=20% Similarity=0.266 Sum_probs=113.1
Q ss_pred hHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCC-EEEEEeCCHH
Q 038410 571 NELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEE 649 (850)
Q Consensus 571 ~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~ 649 (850)
++.+...+++.|.+.++...... ..++.+.+. +.++.+|||||||+|.+++.+++. ++ +|+|+|+|+.
T Consensus 85 ~~~~~i~i~p~~afgtg~h~tt~--------~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~ 153 (250)
T PRK00517 85 PDEINIELDPGMAFGTGTHPTTR--------LCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQ 153 (250)
T ss_pred CCeEEEEECCCCccCCCCCHHHH--------HHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHH
Confidence 55666889999999888753311 112222222 467899999999999999988776 54 5999999999
Q ss_pred HHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcC
Q 038410 650 QLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCY 729 (850)
Q Consensus 650 ~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~ 729 (850)
+++.|+++++.+++.+++.+..+| .+||+|+++...+. +..+++++.++|||||+++++.+...
T Consensus 154 ~l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~~~-----~~~l~~~~~~~LkpgG~lilsgi~~~---- 217 (250)
T PRK00517 154 AVEAARENAELNGVELNVYLPQGD-------LKADVIVANILANP-----LLELAPDLARLLKPGGRLILSGILEE---- 217 (250)
T ss_pred HHHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcHHH-----HHHHHHHHHHhcCCCcEEEEEECcHh----
Confidence 999999999998886556554433 27999999754333 46889999999999999999755321
Q ss_pred CCCcCccccccccccCCCCCCCHHHHHHHHhcCCceEEEEeeecC
Q 038410 730 DGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRLCVEHLENIG 774 (850)
Q Consensus 730 ~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 774 (850)
...++.+.+.+ .||.+......+
T Consensus 218 ---------------------~~~~v~~~l~~-~Gf~~~~~~~~~ 240 (250)
T PRK00517 218 ---------------------QADEVLEAYEE-AGFTLDEVLERG 240 (250)
T ss_pred ---------------------hHHHHHHHHHH-CCCEEEEEEEeC
Confidence 23455566664 699988766543
No 111
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=1.3e-12 Score=130.90 Aligned_cols=234 Identities=17% Similarity=0.207 Sum_probs=147.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEee--CCeee-ecceeeccCCCchHHHHHHHHcCCCcccc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI--DGVDL-DIGFMLFNHVEYPNMMEFLESLGVDMGTS 78 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~--~G~~~-d~G~~~~~~~~~~~~~~l~~~lgl~~~~~ 78 (850)
|++|||||++|+..|..|++.|++|+|+|+++++||+|.+... .|..+ ..|+|.| ......+++.+..+---..-.
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIF-HT~~~~Vwdyv~~F~e~~~Y~ 81 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIF-HTDNKRVWDYVNQFTEFNPYQ 81 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCcee-ecCchHHHHHHhhhhhhhhhc
Confidence 8999999999999999999999999999999999999999887 57555 4599999 478888998887763211111
Q ss_pred cceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCCCCcHHHHHhhcCCC
Q 038410 79 DMSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENSPDIDRNETLGHFIKSRGYS 158 (850)
Q Consensus 79 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 158 (850)
. ......+|..+..+- ++...-.-......+...+. +...........+..++++-.-+. ..
T Consensus 82 h--rVla~~ng~~~~lP~--nl~ti~ql~G~~~~p~~a~~-------------~i~~~~~~~~~~~~q~~ee~ais~-vg 143 (374)
T COG0562 82 H--RVLALVNGQLYPLPF--NLNTINQLFGKNFTPDEARK-------------FIEEQAAEIDIAEPQNLEEQAISL-VG 143 (374)
T ss_pred c--ceeEEECCeeeeccc--cHHHHHHHhCccCCHHHHHH-------------HHHHhhccccccchhhhhhHHHHH-HH
Confidence 1 113334555544432 22111111111112221111 111111111111333444444443 56
Q ss_pred HHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH----HhhhcCCCcEEEecCChHHHHHHHHHHhhccCceEeeCCc
Q 038410 159 ELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR----LFQLFGHPQCVTVRRHSHSQIDKVSEQLKSWGIQIRMSCE 234 (850)
Q Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~ 234 (850)
..+.+.++.++..+.|+.+++++ |+..+-..-. ..+.|.......|++|...+++.|++.= ..+|++||.
T Consensus 144 ~~LY~~f~kgYT~KQWG~~p~eL---pasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp---~I~V~Lntd 217 (374)
T COG0562 144 RDLYEAFFKGYTEKQWGLDPKEL---PASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTAMFEKMLDHP---NIDVRLNTD 217 (374)
T ss_pred HHHHHHHhccccHHHhCCChHHC---CHHHhcccceEEcccCcccCcccccCccccHHHHHHHHhcCC---CceEEecCc
Confidence 67788899999999999999998 7765544322 1111222233468899888888877643 679999998
Q ss_pred eEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHH
Q 038410 235 VYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 235 V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~ 270 (850)
-..+..... + +.+.+||.|.|.+..-
T Consensus 218 ~~~~~~~~~--------~--~~~~~VvytG~iD~~F 243 (374)
T COG0562 218 FFDVKDQLR--------A--IPFAPVVYTGPIDAYF 243 (374)
T ss_pred HHHHhhhhc--------c--cCCCceEEecchHhhh
Confidence 777654321 1 5677999999987653
No 112
>PRK06202 hypothetical protein; Provisional
Probab=99.50 E-value=1.1e-13 Score=141.92 Aligned_cols=154 Identities=14% Similarity=0.210 Sum_probs=108.4
Q ss_pred CCCCCeEEEEccCccHHHHHHHHh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEE
Q 038410 613 VNKGLDVLEIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTI 686 (850)
Q Consensus 613 ~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v 686 (850)
..++.+|||||||+|.++..+++. ++++|+|+|+|++|++.|+++.... ++++.+.|..+++ ++++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEE
Confidence 356789999999999999888753 3469999999999999999876433 4667777766665 56799999
Q ss_pred EEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcC-ccccc-cccccCC-----CCCCCHHHHHHHH
Q 038410 687 ISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRL-SPGFI-TEYVFPG-----GCLPSLNRITSAM 759 (850)
Q Consensus 687 ~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~-~~~~~-~~~i~p~-----~~~~~~~~~~~~~ 759 (850)
+++.+++|++++....++++++++++ |.+++.++..+...+..+.. ...+. ..++-.+ ...++.+++.+.+
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 99999999988767899999999998 66777666554321111100 00011 0011111 1357888887776
Q ss_pred hcCCceEEEEeeecC
Q 038410 760 TSSSRLCVEHLENIG 774 (850)
Q Consensus 760 ~~~~gf~v~~~~~~~ 774 (850)
.+ ||++.....++
T Consensus 212 ~~--Gf~~~~~~~~~ 224 (232)
T PRK06202 212 PQ--GWRVERQWPFR 224 (232)
T ss_pred hC--CCeEEecccee
Confidence 64 99987765543
No 113
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.50 E-value=2e-13 Score=139.71 Aligned_cols=155 Identities=25% Similarity=0.372 Sum_probs=113.8
Q ss_pred CCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--CCCCccEEEEecch
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--EVKKYDTIISCEMI 692 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--~~~~fD~v~s~~~~ 692 (850)
.+.+|||+|||+|.++..+++. +++++++|+|+++++.+++++...+.. ++++...|+.+.+ ..++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4789999999999999999886 789999999999999999998876653 6899999988776 23789999999999
Q ss_pred hhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccC----CCCCCCHHHHHHHHhcCCceEEE
Q 038410 693 ENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFP----GGCLPSLNRITSAMTSSSRLCVE 768 (850)
Q Consensus 693 ~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p----~~~~~~~~~~~~~~~~~~gf~v~ 768 (850)
+|+. ++..+++++.++|+|||.+++..................++.....+ ...+.+..++.+.+.+ +||+++
T Consensus 123 ~~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~G~~i~ 199 (224)
T TIGR01983 123 EHVP--DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLES-AGLRVK 199 (224)
T ss_pred HhCC--CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHH-cCCeee
Confidence 9995 57899999999999999999866532210000000000111111111 1134567788777775 799999
Q ss_pred EeeecC
Q 038410 769 HLENIG 774 (850)
Q Consensus 769 ~~~~~~ 774 (850)
++....
T Consensus 200 ~~~~~~ 205 (224)
T TIGR01983 200 DVKGLV 205 (224)
T ss_pred eeeeEE
Confidence 887654
No 114
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.49 E-value=2.2e-13 Score=141.20 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHcCC---CCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEccc
Q 038410 599 AQMRKVSLLIEKARV---NKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDY 674 (850)
Q Consensus 599 aq~~~~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~ 674 (850)
.|......+++.+.. ..+.+|||||||+|.++..+++. +..+++++|+|+++++.++++.. ++++++.+|+
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~ 89 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecch
Confidence 344444555555442 34579999999999999999988 56789999999999999988753 3789999999
Q ss_pred CCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHH
Q 038410 675 RQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLN 753 (850)
Q Consensus 675 ~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 753 (850)
.+.+ ++++||+|++..+++|+. ++..+++++.++|||||.+++..+...... ........ .+..+++..
T Consensus 90 ~~~~~~~~~fD~vi~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~ 159 (240)
T TIGR02072 90 EKLPLEDSSFDLIVSNLALQWCD--DLSQALSELARVLKPGGLLAFSTFGPGTLH-----ELRQSFGQ---HGLRYLSLD 159 (240)
T ss_pred hhCCCCCCceeEEEEhhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeCCccCHH-----HHHHHHHH---hccCCCCHH
Confidence 9887 678999999999999994 478999999999999999999765432210 00011111 234556778
Q ss_pred HHHHHHhcCCceEEEEe
Q 038410 754 RITSAMTSSSRLCVEHL 770 (850)
Q Consensus 754 ~~~~~~~~~~gf~v~~~ 770 (850)
++.+.+.+ + |....+
T Consensus 160 ~~~~~l~~-~-f~~~~~ 174 (240)
T TIGR02072 160 ELKALLKN-S-FELLTL 174 (240)
T ss_pred HHHHHHHH-h-cCCcEE
Confidence 88776664 3 665544
No 115
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.48 E-value=8.8e-13 Score=137.49 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=57.6
Q ss_pred cEEEecCChHHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChH
Q 038410 203 QCVTVRRHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 203 ~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
.++......+.++++|.+++++.|++|+++++|.+|+.++.+..|.+.+|+++.||.+|+|++.-
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGK 166 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCc
Confidence 33333477789999999999999999999999999999998899999999889999999999843
No 116
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.48 E-value=8.4e-13 Score=124.93 Aligned_cols=154 Identities=14% Similarity=0.206 Sum_probs=115.0
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCC-CC--CCC
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQ-MP--EVK 681 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~-~~--~~~ 681 (850)
+.|.+. ++||.||||+|||.|.+..++.+..+++.+|||++++.+..+.++ .+.++++|+.+ +. +++
T Consensus 5 ~~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 5 QIIAEW--IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HHHHHH--cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCC
Confidence 345554 578999999999999999999987899999999999998888766 46799999865 33 789
Q ss_pred CccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCC----------CcC-CCCcCccccccccccCCCCCC
Q 038410 682 KYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPD----------QCY-DGHRLSPGFITEYVFPGGCLP 750 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~i~p~~~~~ 750 (850)
+||.|+.+.+++++ .++...++++.|+ |...+++.+.... .+. ..-.-...| |-.|+-++.
T Consensus 75 sFD~VIlsqtLQ~~--~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~W---YdTPNih~~ 146 (193)
T PF07021_consen 75 SFDYVILSQTLQAV--RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEW---YDTPNIHLC 146 (193)
T ss_pred CccEEehHhHHHhH--hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcc---cCCCCcccc
Confidence 99999999999999 6689999999777 5567765543211 000 000001223 344788899
Q ss_pred CHHHHHHHHhcCCceEEEEeeecCCcH
Q 038410 751 SLNRITSAMTSSSRLCVEHLENIGIHF 777 (850)
Q Consensus 751 ~~~~~~~~~~~~~gf~v~~~~~~~~~y 777 (850)
|..+..+... +.|++|++...+..+.
T Consensus 147 Ti~DFe~lc~-~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 147 TIKDFEDLCR-ELGIRIEERVFLDGGR 172 (193)
T ss_pred cHHHHHHHHH-HCCCEEEEEEEEcCCC
Confidence 9999976555 4699999887766543
No 117
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.48 E-value=4e-13 Score=153.30 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCC--CC-
Q 038410 602 RKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQ--MP- 678 (850)
Q Consensus 602 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~--~~- 678 (850)
.....+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+++++.+++.. +..++++++++|+.+ ++
T Consensus 24 ~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 24 EERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCC
Confidence 33456777777777889999999999999999997 779999999999999876532 334589999999864 44
Q ss_pred CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecC
Q 038410 679 EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSV 724 (850)
Q Consensus 679 ~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~ 724 (850)
++++||+|++..+++|++++....++++++++|||||++++.+...
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 5679999999999999988778999999999999999999987654
No 118
>PRK04266 fibrillarin; Provisional
Probab=99.47 E-value=8.2e-13 Score=132.91 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=101.6
Q ss_pred HHcCCCCCCeEEEEccCccHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC----CCCCCc
Q 038410 609 EKARVNKGLDVLEIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM----PEVKKY 683 (850)
Q Consensus 609 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~----~~~~~f 683 (850)
+++++++|++|||+|||+|.++..+++.. ..+|+|+|+|++|++.+.+++++. .++.++.+|..+. +..++|
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~ 142 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKV 142 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccC
Confidence 36889999999999999999999999973 469999999999999888877653 3799999998752 123579
Q ss_pred cEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhcCC
Q 038410 684 DTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSS 763 (850)
Q Consensus 684 D~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~ 763 (850)
|+|++.... ......++++++++|||||++++.....+ .+|... | . ....+..+.++. +
T Consensus 143 D~i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI~v~~~~----------~d~~~~---~-~--~~~~~~~~~l~~-a 201 (226)
T PRK04266 143 DVIYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLLAIKARS----------IDVTKD---P-K--EIFKEEIRKLEE-G 201 (226)
T ss_pred CEEEECCCC----hhHHHHHHHHHHHhcCCCcEEEEEEeccc----------ccCcCC---H-H--HHHHHHHHHHHH-c
Confidence 999964221 11234578999999999999999522111 111100 0 0 001234466664 7
Q ss_pred ceEEEEeeecCC
Q 038410 764 RLCVEHLENIGI 775 (850)
Q Consensus 764 gf~v~~~~~~~~ 775 (850)
||+++..+++.+
T Consensus 202 GF~~i~~~~l~p 213 (226)
T PRK04266 202 GFEILEVVDLEP 213 (226)
T ss_pred CCeEEEEEcCCC
Confidence 999999988754
No 119
>PRK14967 putative methyltransferase; Provisional
Probab=99.47 E-value=2.5e-12 Score=130.89 Aligned_cols=116 Identities=21% Similarity=0.325 Sum_probs=93.5
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCC
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKK 682 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~ 682 (850)
+-.++..+.++++.+|||+|||+|.++..+++. ++ +|+++|+|+++++.++++++..++ ++++++.|+.+..++++
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~ 101 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRP 101 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCC
Confidence 445566667888999999999999999999987 54 999999999999999999988776 68999999876545578
Q ss_pred ccEEEEecchhhhC-------------------hhhHHHHHHHHHhccccCeEEEEEEe
Q 038410 683 YDTIISCEMIENVG-------------------HEYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 683 fD~v~s~~~~~~~~-------------------~~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
||+|+++..+..-. ...+..+++++.++|||||++++...
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999985433221 11256788999999999999997443
No 120
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.46 E-value=3.1e-13 Score=134.82 Aligned_cols=106 Identities=23% Similarity=0.229 Sum_probs=88.6
Q ss_pred CCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEccc-CCCC---CCCCccEEEEe
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDY-RQMP---EVKKYDTIISC 689 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~-~~~~---~~~~fD~v~s~ 689 (850)
++.+|||||||+|.++..+++. ++++|+|||+|+++++.|+++++..++ ++++++++|+ ..++ ++++||.|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5789999999999999999987 678999999999999999999998887 4799999998 6554 35789999998
Q ss_pred cchhhhC------hhhHHHHHHHHHhccccCeEEEEEE
Q 038410 690 EMIENVG------HEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 690 ~~~~~~~------~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
....+.. ......++++++++|||||.+++.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 6543221 1124789999999999999999854
No 121
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.46 E-value=1.5e-12 Score=122.32 Aligned_cols=114 Identities=24% Similarity=0.291 Sum_probs=100.6
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCC
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVK 681 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~ 681 (850)
-...+.+|.++||++++|||||+|..++.++.. +.++|++||-+++.++..++++++.|+ ++++++.+|+.+.- ...
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~ 101 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLP 101 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCC
Confidence 346788999999999999999999999999955 789999999999999999999999995 59999999987764 223
Q ss_pred CccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecC
Q 038410 682 KYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSV 724 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~ 724 (850)
+||.|+..+. .. .+..++.+...|||||++++..++.
T Consensus 102 ~~daiFIGGg-~~-----i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 102 SPDAIFIGGG-GN-----IEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CCCEEEECCC-CC-----HHHHHHHHHHHcCcCCeEEEEeecH
Confidence 7999999987 43 4889999999999999999987764
No 122
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.45 E-value=9.1e-13 Score=139.01 Aligned_cols=136 Identities=20% Similarity=0.290 Sum_probs=105.2
Q ss_pred HHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHH
Q 038410 572 ELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQL 651 (850)
Q Consensus 572 ~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~ 651 (850)
+-....+|+.|.+.++.... .+....+++.+ ..++++|||+|||+|.+++.+++....+|+|+|+|+.++
T Consensus 126 ~~~~i~ldpg~aFgtG~h~t---------t~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al 195 (288)
T TIGR00406 126 DALIIMLDPGLAFGTGTHPT---------TSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV 195 (288)
T ss_pred CcEEEEECCCCcccCCCCHH---------HHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH
Confidence 44557899999887776532 12222333333 357899999999999999998876335899999999999
Q ss_pred HHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 652 KYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 652 ~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
+.|++++..+++.+++.+...|.... .+++||+|+++...++ +..++.++.++|||||+++++.+.
T Consensus 196 ~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~~~-----l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 196 ESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILAEV-----IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCHHH-----HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 99999999999887888887774332 3468999999876543 467899999999999999996653
No 123
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.45 E-value=4.5e-13 Score=149.60 Aligned_cols=192 Identities=11% Similarity=0.043 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhhccC-ceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCcce
Q 038410 212 HSQIDKVSEQLKSWG-IQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRY 290 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~ 290 (850)
..++.+|++.+.+.| ..+..+++|..++..++.+.|.|.+|+ +.||+||+|++++.....-... .-.++.
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~--------~~~~~~ 226 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG--------ELPLPL 226 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC--------CCcCcc
Confidence 578999999999999 567779999999986445789999987 9999999999988643221110 000011
Q ss_pred ee---cEEEEecCCCCCCCCC-----CCceeeeeccc-CCCceEEEEecccc---CCCCCCCC----ceE---EecCCCC
Q 038410 291 VY---RDVFLHRDKNFMPQNP-----AAWSAWNFVGS-TNGKICLTYCLNVL---QNIGETSM----PFL---ATLNPDR 351 (850)
Q Consensus 291 ~~---~~v~l~~d~~~~p~~~-----~~~~s~~~~~~-~~~~~~~~~~~~~l---~~l~~~~~----~~~---~~l~~~~ 351 (850)
.+ ..+.+.......+... .......|... .++...+....... ..-..... ++. ..+-|..
T Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l 306 (387)
T COG0665 227 RPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPGL 306 (387)
T ss_pred ccccceEEEecCCCccccccccceEEEecCCceEEEEcCCCcEEEeecccccCCCCccccCcchhHHHHHHHHHHhCccc
Confidence 11 0111111110110000 00000011111 22333332221110 00000000 000 0111111
Q ss_pred CCccceeeEEeccCCCChHHHHHHHHhhh-hcCCCCeEEEccccCCCCCcchhhHHHHHHHHhcccc
Q 038410 352 TPQNTLLKWSTGHSVPSVAASKASLELHL-IQGKRGIWYSGVDQGYGFPEDGLKVGMIAAHGVLGKS 417 (850)
Q Consensus 352 ~~~~~~~~w~~~~p~~~~~~~~~~~~l~~-~~~~~~l~~aG~~~g~G~~e~A~~sG~~aA~~ilg~~ 417 (850)
....+...|...+|..+ ++..+.+.. .. .+|+|+|.+|.++|+ -.+...|+.+|+.|+|.+
T Consensus 307 ~~~~~~~~w~g~~~~t~---pd~~P~iG~~~~-~~~l~~a~G~~~~G~-~~~p~~g~~lA~li~g~~ 368 (387)
T COG0665 307 ADAGIEAAWAGLRPPTT---PDGLPVIGRAAP-LPNLYVATGHGGHGF-TLAPALGRLLADLILGGE 368 (387)
T ss_pred cccccceeeeccccCCC---CCCCceeCCCCC-CCCEEEEecCCCcCh-hhccHHHHHHHHHHcCCC
Confidence 11223336766666432 334455553 34 789999999999999 699999999999999987
No 124
>PLN03075 nicotianamine synthase; Provisional
Probab=99.45 E-value=7.8e-13 Score=135.86 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=92.0
Q ss_pred CCCCeEEEEccCccHH-HHHHH-Hh-cCCEEEEEeCCHHHHHHHHHHHHH-cCCCCCEEEEEcccCCCC-CCCCccEEEE
Q 038410 614 NKGLDVLEIGCGWGTL-AIEIV-KQ-TGCKYTGITLSEEQLKYTETKVKE-AGLQDHIRLYLCDYRQMP-EVKKYDTIIS 688 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~-~~~la-~~-~~~~v~gid~s~~~~~~a~~~~~~-~gl~~~v~~~~~D~~~~~-~~~~fD~v~s 688 (850)
.++.+|||||||.|.+ ++.++ +. ++++++|+|+|+++++.|++.++. .++.++++|..+|+.+.. ..+.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 4778999999998855 34344 33 788999999999999999999964 889889999999998876 4478999999
Q ss_pred ecchhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 689 CEMIENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
. ++.++..+++.++++.+.+.|||||.+++..
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 8888866678999999999999999999965
No 125
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-12 Score=126.15 Aligned_cols=111 Identities=23% Similarity=0.279 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCC-CCCC
Q 038410 602 RKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQ-MPEV 680 (850)
Q Consensus 602 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~-~~~~ 680 (850)
.....+++.|.++++++|||||||+|..+..+|+. ..+|+.||..++..+.|+++++..|+. +|.++++|... +++.
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCC
Confidence 34568999999999999999999999999999998 559999999999999999999999997 59999999655 4566
Q ss_pred CCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEe
Q 038410 681 KKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 681 ~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
.+||+|+.......+|+. +.+-|||||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCHH--------HHHhcccCCEEEEEEc
Confidence 899999999999999753 5667899999998443
No 126
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.8e-12 Score=132.42 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=115.8
Q ss_pred HHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCC-EEEEEeCCHHHHHH
Q 038410 575 SLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKY 653 (850)
Q Consensus 575 ~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~ 653 (850)
..-+|+.|.+..+.-+..... -..++++. ++|.+|||+|||+|-+++.+++. |+ +|+|+|+++..++.
T Consensus 132 ~i~lDPGlAFGTG~HpTT~lc---------L~~Le~~~-~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~a 200 (300)
T COG2264 132 NIELDPGLAFGTGTHPTTSLC---------LEALEKLL-KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEA 200 (300)
T ss_pred EEEEccccccCCCCChhHHHH---------HHHHHHhh-cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHH
Confidence 467899998877765432211 12233332 48899999999999999999997 76 59999999999999
Q ss_pred HHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCc
Q 038410 654 TETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHR 733 (850)
Q Consensus 654 a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~ 733 (850)
|+++++.++++..++....+..+.+..++||+|+++= +-.+ +..+...+.+.|||||+++++-|....
T Consensus 201 a~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-LA~v----l~~La~~~~~~lkpgg~lIlSGIl~~q------- 268 (300)
T COG2264 201 ARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-LAEV----LVELAPDIKRLLKPGGRLILSGILEDQ------- 268 (300)
T ss_pred HHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-hHHH----HHHHHHHHHHHcCCCceEEEEeehHhH-------
Confidence 9999999998753444444444444447999999986 3333 578899999999999999997764211
Q ss_pred CccccccccccCCCCCCCHHHHHHHHhcCCceEEEEeeec
Q 038410 734 LSPGFITEYVFPGGCLPSLNRITSAMTSSSRLCVEHLENI 773 (850)
Q Consensus 734 ~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~ 773 (850)
...+.+++.+ .||+++.+...
T Consensus 269 ------------------~~~V~~a~~~-~gf~v~~~~~~ 289 (300)
T COG2264 269 ------------------AESVAEAYEQ-AGFEVVEVLER 289 (300)
T ss_pred ------------------HHHHHHHHHh-CCCeEeEEEec
Confidence 3355566654 59999887654
No 127
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.44 E-value=1.7e-12 Score=139.12 Aligned_cols=128 Identities=18% Similarity=0.233 Sum_probs=101.6
Q ss_pred eecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 038410 585 SCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGL 663 (850)
Q Consensus 585 s~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl 663 (850)
..++|.....+... +.+++.+......+|||+|||+|.++..++++ ++.+|+++|+|+.+++.|+++++.+++
T Consensus 172 ~pgvFs~~~lD~gt------~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l 245 (342)
T PRK09489 172 LPGVFSRDGLDVGS------QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL 245 (342)
T ss_pred CCCCCCCCCCCHHH------HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 36677665544443 35566665555568999999999999999988 668999999999999999999999887
Q ss_pred CCCEEEEEcccCCCCCCCCccEEEEecchhhhC---hhhHHHHHHHHHhccccCeEEEEEE
Q 038410 664 QDHIRLYLCDYRQMPEVKKYDTIISCEMIENVG---HEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 664 ~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~~---~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
. .+++..|..+. .+++||.|+|+..|++.. .+....+++++.+.|||||.+++..
T Consensus 246 ~--~~~~~~D~~~~-~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 246 E--GEVFASNVFSD-IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred C--CEEEEcccccc-cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 4 57778886543 247899999999887632 2356889999999999999999854
No 128
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.7e-12 Score=131.57 Aligned_cols=131 Identities=21% Similarity=0.375 Sum_probs=108.6
Q ss_pred cceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHH
Q 038410 582 MMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKE 660 (850)
Q Consensus 582 ~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~ 660 (850)
+.-.+++|+...-|... +.+++.+....+.+|||+|||+|.+++.+++. +..+++-+|+|...++.|+++++.
T Consensus 131 ~~t~pGVFS~~~lD~GS------~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 131 FKTLPGVFSRDKLDKGS------RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred EEeCCCCCcCCCcChHH------HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH
Confidence 34468899888777776 68889998887889999999999999999999 678999999999999999999999
Q ss_pred cCCCCCEEEEEcccCCCCCCCCccEEEEecchhhhChhhHH----HHHHHHHhccccCeEEEEEE
Q 038410 661 AGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIENVGHEYIE----EFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 661 ~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~~~~~~~----~~~~~~~r~LkpgG~~~~~~ 721 (850)
++++.. ++...|..+--. ++||.|+|+..|+. |.+-.. ++++...+.|++||.+.|..
T Consensus 205 N~~~~~-~v~~s~~~~~v~-~kfd~IisNPPfh~-G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 205 NGVENT-EVWASNLYEPVE-GKFDLIISNPPFHA-GKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred cCCCcc-EEEEeccccccc-ccccEEEeCCCccC-CcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 988643 677777443322 49999999999874 333334 89999999999999999844
No 129
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.43 E-value=7.2e-14 Score=132.39 Aligned_cols=181 Identities=25% Similarity=0.417 Sum_probs=132.9
Q ss_pred HHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCC
Q 038410 560 RRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGC 639 (850)
Q Consensus 560 ~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~ 639 (850)
..-|+.-+|.-.+-|...|-+...|+-. .++..++.+++..+-.++||+|||+|-.+..+-.. -.
T Consensus 84 ~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP--------------~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~ 148 (287)
T COG4976 84 SAYVETLFDQYAERFDHILVDKLGYSVP--------------ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-AD 148 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCccH--------------HHHHHHHHhccCCccceeeecccCcCcccHhHHHH-Hh
Confidence 3556777777777788877777777422 35678888888888899999999999999888776 56
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC---CCCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeE
Q 038410 640 KYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM---PEVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGL 716 (850)
Q Consensus 640 ~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~---~~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~ 716 (850)
+++|+|||++|++.|.++ |+-+ +..+.|...+ ..++.||+|++..++.++|. +..+|-.+..+|+|||.
T Consensus 149 ~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~--Le~~~~~aa~~L~~gGl 220 (287)
T COG4976 149 RLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA--LEGLFAGAAGLLAPGGL 220 (287)
T ss_pred hccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhhhhHHHhhcc--hhhHHHHHHHhcCCCce
Confidence 899999999999999886 4432 3344443322 23578999999999999976 89999999999999999
Q ss_pred EEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhcCCceEEEEeeecC
Q 038410 717 LLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRLCVEHLENIG 774 (850)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 774 (850)
+.++.-+.++.. .|. +-|.-.+-+.+.++..+....||+++.+++..
T Consensus 221 faFSvE~l~~~~--------~f~---l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 221 FAFSVETLPDDG--------GFV---LGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred EEEEecccCCCC--------Cee---cchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 999776655431 111 11222333444444555556899999998754
No 130
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.43 E-value=7.3e-13 Score=131.77 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=99.3
Q ss_pred HHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---CCC
Q 038410 606 LLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---EVK 681 (850)
Q Consensus 606 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---~~~ 681 (850)
.+.+........+|||||||.|.+++.+|++ ..++++|||+++++.+.|+++++.++++++|++++.|+.++. ...
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~ 114 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA 114 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence 4445566666889999999999999999999 669999999999999999999999999999999999998876 335
Q ss_pred CccEEEEecchhhhC----------------hhhHHHHHHHHHhccccCeEEEEE
Q 038410 682 KYDTIISCEMIENVG----------------HEYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~----------------~~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
+||+|+|+..+.-.+ .-+++.+++.+.++|||||++.+.
T Consensus 115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 799999997664332 235789999999999999999983
No 131
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.42 E-value=7.5e-13 Score=120.29 Aligned_cols=106 Identities=24% Similarity=0.471 Sum_probs=89.8
Q ss_pred CCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---CCCCccEEEEecch
Q 038410 616 GLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---EVKKYDTIISCEMI 692 (850)
Q Consensus 616 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---~~~~fD~v~s~~~~ 692 (850)
|.+|||+|||+|.++..+++....+++|+|+++..++.+++++...++.++++++++|+.+.. ++++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 579999999999999999998338999999999999999999999999889999999988765 56899999999877
Q ss_pred hhhC------hhhHHHHHHHHHhccccCeEEEEEE
Q 038410 693 ENVG------HEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 693 ~~~~------~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
.... .+....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6431 1245789999999999999999854
No 132
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.41 E-value=1.6e-12 Score=140.26 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=97.8
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCc
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKY 683 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~f 683 (850)
..++..++++++++|||+|||+|.+++.++.. +++|+|+|+|++|++.|+++++..|+++ +++.++|+.+++ .+++|
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCC
Confidence 35666677899999999999999999988775 8999999999999999999999999875 899999999988 56899
Q ss_pred cEEEEecchhh-------hChhhHHHHHHHHHhccccCeEEEEEEe
Q 038410 684 DTIISCEMIEN-------VGHEYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 684 D~v~s~~~~~~-------~~~~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
|.|+++..+.. ...+.+..+++++.++|||||++++...
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 99999754321 1113368899999999999999988543
No 133
>PRK14968 putative methyltransferase; Provisional
Probab=99.40 E-value=7.9e-12 Score=124.20 Aligned_cols=115 Identities=26% Similarity=0.336 Sum_probs=93.5
Q ss_pred HHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-EEEEEcccCCCCCCCCcc
Q 038410 606 LLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDH-IRLYLCDYRQMPEVKKYD 684 (850)
Q Consensus 606 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~-v~~~~~D~~~~~~~~~fD 684 (850)
.+++.+...++.+|||+|||+|.++..++++ +++|+|+|+|+++++.+++++...++.++ +.++++|..+...+++||
T Consensus 14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d 92 (188)
T PRK14968 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFD 92 (188)
T ss_pred HHHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCce
Confidence 4445555578889999999999999999998 89999999999999999999988887544 899999977644445899
Q ss_pred EEEEecchhhhC-------------------hhhHHHHHHHHHhccccCeEEEEEE
Q 038410 685 TIISCEMIENVG-------------------HEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 685 ~v~s~~~~~~~~-------------------~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
+|+++..+.+.+ ...+..+++++.++|||||.+++..
T Consensus 93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 999986654311 2235778999999999999988754
No 134
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.40 E-value=4.3e-12 Score=126.48 Aligned_cols=115 Identities=19% Similarity=0.192 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC-C-
Q 038410 602 RKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM-P- 678 (850)
Q Consensus 602 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~-~- 678 (850)
.....+++.+.++++.+|||+|||+|.++..+++. ++++|+++|+|+++++.+++++++.++. +++++.+|+.+. +
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhh
Confidence 33345788888889999999999999999999876 5789999999999999999999988885 799999998652 2
Q ss_pred CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 679 EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 679 ~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
....+|.|+... ...+..+++++.++|||||++++....
T Consensus 106 ~~~~~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 106 LAPAPDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCCCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 223568776532 134688999999999999999997653
No 135
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.40 E-value=5.1e-12 Score=132.66 Aligned_cols=107 Identities=21% Similarity=0.376 Sum_probs=88.1
Q ss_pred CCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecch
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMI 692 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~ 692 (850)
+++.+|||+|||+|.++..++++ ++++|+|+|+|+++++.|+++++.+++.++++++++|+.+..++++||+|+++...
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 45679999999999999999987 67899999999999999999999999888899999998543344589999997321
Q ss_pred ------hhh-----------------ChhhHHHHHHHHHhccccCeEEEEE
Q 038410 693 ------ENV-----------------GHEYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 693 ------~~~-----------------~~~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
.++ |-+.+..+++++.++|||||++++.
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111 1123577899999999999999874
No 136
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.40 E-value=1.6e-12 Score=129.33 Aligned_cols=153 Identities=13% Similarity=0.160 Sum_probs=104.6
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCC-CC--CCC
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQ-MP--EVK 681 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~-~~--~~~ 681 (850)
+.+.+.+ +++.+|||||||+|.++..+++..+++++|+|+|+++++.++++ +++++++|+.+ ++ +++
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~ 74 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDK 74 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCC
Confidence 3455553 47789999999999999999877678999999999999988642 46888899875 32 457
Q ss_pred CccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCc--CCCCcC-cccccccc--c---cCCCCCCCHH
Q 038410 682 KYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQC--YDGHRL-SPGFITEY--V---FPGGCLPSLN 753 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~--~~~~~~-~~~~~~~~--i---~p~~~~~~~~ 753 (850)
+||+|+++.+++|+. ++..+++++.|.+++ +++......... ...+.. .......+ . -|...+++..
T Consensus 75 sfD~Vi~~~~l~~~~--d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 149 (194)
T TIGR02081 75 SFDYVILSQTLQATR--NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIA 149 (194)
T ss_pred CcCEEEEhhHhHcCc--CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHH
Confidence 899999999999995 478899999887664 334322211000 000000 00011110 0 1234578899
Q ss_pred HHHHHHhcCCceEEEEeeec
Q 038410 754 RITSAMTSSSRLCVEHLENI 773 (850)
Q Consensus 754 ~~~~~~~~~~gf~v~~~~~~ 773 (850)
++.+.+++ +||++.+...+
T Consensus 150 ~~~~ll~~-~Gf~v~~~~~~ 168 (194)
T TIGR02081 150 DFEDLCGE-LNLRILDRAAF 168 (194)
T ss_pred HHHHHHHH-CCCEEEEEEEe
Confidence 99887775 79999887665
No 137
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.40 E-value=1.1e-12 Score=130.15 Aligned_cols=106 Identities=19% Similarity=0.267 Sum_probs=88.8
Q ss_pred CCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC----CCCCccEEEEe
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP----EVKKYDTIISC 689 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~----~~~~fD~v~s~ 689 (850)
...++||||||+|.++..+|++ ++.+|+|+|+|+++++.|++++...++. +++++++|+.+++ +++++|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999999988 7889999999999999999999988886 8999999987643 34689999998
Q ss_pred cchhhhChh------hHHHHHHHHHhccccCeEEEEEE
Q 038410 690 EMIENVGHE------YIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 690 ~~~~~~~~~------~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
....+...+ ..+.++++++++|||||.+++.+
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 654443211 12579999999999999999854
No 138
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.39 E-value=9.4e-12 Score=125.48 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEec---CCceEEEeeCCcEEeCCEEEEecChHHHHHhhc
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPA---DEGCSIVCVNGSQEFYNGCVMAVHAPDALRILG 274 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~---~~~v~V~~~~G~~i~ad~VV~A~p~~~~~~ll~ 274 (850)
.+-+.++...+++.|+.++.+..|+.+... +..+.|.|.+|..+.|+.+|+|+++|... +++
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~ 217 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLP 217 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcC
Confidence 356777888888889999999999999854 44589999999989999999999999764 444
No 139
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.39 E-value=3.5e-12 Score=128.97 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=93.0
Q ss_pred HHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCC
Q 038410 603 KVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVK 681 (850)
Q Consensus 603 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~ 681 (850)
....+++.+.++++++|||||||+|.++..+++. ..+|+++|+++++++.|++++++.++. ++++.++|..+.. ..+
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCC
Confidence 3457778888999999999999999999988887 569999999999999999999988886 5999999976543 447
Q ss_pred CccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEe
Q 038410 682 KYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
+||+|++...+++++ +.+.+.|||||++++...
T Consensus 144 ~fD~I~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 899999988777663 346789999999998654
No 140
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.38 E-value=3.6e-12 Score=135.93 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=95.8
Q ss_pred HHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---CCC
Q 038410 606 LLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---EVK 681 (850)
Q Consensus 606 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---~~~ 681 (850)
.+++.+....+..+||||||+|.++..+|++ ++..++|+|+++.+++.|.+++...++. ++.++++|++.+. +++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCC
Confidence 4444555556779999999999999999998 7899999999999999999999999986 7999999987652 678
Q ss_pred CccEEEEecchhhhChhh----HHHHHHHHHhccccCeEEEEEE
Q 038410 682 KYDTIISCEMIENVGHEY----IEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~~~~----~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
++|.|++.....|...++ .+.++++++|+|||||.+.+.+
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999987655543221 2689999999999999999954
No 141
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.38 E-value=6.5e-12 Score=130.36 Aligned_cols=158 Identities=22% Similarity=0.293 Sum_probs=114.3
Q ss_pred hHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCC-EEEEEeCCHH
Q 038410 571 NELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEE 649 (850)
Q Consensus 571 ~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~ 649 (850)
.+.....+||.|.+.++..+. .+..-.+++++ ..+|++|||||||+|-+++.+++. |+ +|+|+|+++.
T Consensus 127 ~~~~~I~idPg~AFGTG~H~T---------T~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~ 195 (295)
T PF06325_consen 127 PDEIVIEIDPGMAFGTGHHPT---------TRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPL 195 (295)
T ss_dssp TTSEEEEESTTSSS-SSHCHH---------HHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCH
T ss_pred CCcEEEEECCCCcccCCCCHH---------HHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHH
Confidence 344457899999987775432 22333334444 467899999999999999999997 66 7999999999
Q ss_pred HHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcC
Q 038410 650 QLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCY 729 (850)
Q Consensus 650 ~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~ 729 (850)
.++.|+++++.+++.+++.+. ...+. ..++||+|+++-..+- +...+..+.++|||||+++++-+...
T Consensus 196 Av~~a~~N~~~N~~~~~~~v~--~~~~~-~~~~~dlvvANI~~~v-----L~~l~~~~~~~l~~~G~lIlSGIl~~---- 263 (295)
T PF06325_consen 196 AVEAARENAELNGVEDRIEVS--LSEDL-VEGKFDLVVANILADV-----LLELAPDIASLLKPGGYLILSGILEE---- 263 (295)
T ss_dssp HHHHHHHHHHHTT-TTCEEES--CTSCT-CCS-EEEEEEES-HHH-----HHHHHHHCHHHEEEEEEEEEEEEEGG----
T ss_pred HHHHHHHHHHHcCCCeeEEEE--Eeccc-ccccCCEEEECCCHHH-----HHHHHHHHHHhhCCCCEEEEccccHH----
Confidence 999999999999999877663 22222 2389999999865443 46788899999999999999776432
Q ss_pred CCCcCccccccccccCCCCCCCHHHHHHHHhcCCceEEEEeeecC
Q 038410 730 DGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRLCVEHLENIG 774 (850)
Q Consensus 730 ~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 774 (850)
...++.+.+. + ||++......+
T Consensus 264 ---------------------~~~~v~~a~~-~-g~~~~~~~~~~ 285 (295)
T PF06325_consen 264 ---------------------QEDEVIEAYK-Q-GFELVEEREEG 285 (295)
T ss_dssp ---------------------GHHHHHHHHH-T-TEEEEEEEEET
T ss_pred ---------------------HHHHHHHHHH-C-CCEEEEEEEEC
Confidence 1345666664 4 99988776544
No 142
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.37 E-value=2.1e-11 Score=121.23 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=97.1
Q ss_pred HHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHH------H-----cCCCCCEEEEEcccCC
Q 038410 608 IEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVK------E-----AGLQDHIRLYLCDYRQ 676 (850)
Q Consensus 608 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~------~-----~gl~~~v~~~~~D~~~ 676 (850)
...+.+.++.+||+.|||.|..+.+||++ |.+|+|+|+|+..++.+.+... . .--..+|+++++|+.+
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC
Confidence 34455567789999999999999999998 9999999999999999866310 0 0012379999999999
Q ss_pred CCC----CCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecC
Q 038410 677 MPE----VKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSV 724 (850)
Q Consensus 677 ~~~----~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~ 724 (850)
+++ .++||.|+-...|.+++.+...+|.+.+.++|+|||.+++.++..
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 862 368999999999999999999999999999999999999877643
No 143
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=1.1e-11 Score=131.37 Aligned_cols=105 Identities=20% Similarity=0.347 Sum_probs=87.2
Q ss_pred CCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecch--
Q 038410 616 GLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMI-- 692 (850)
Q Consensus 616 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~-- 692 (850)
..+|||+|||+|.++..+++. ++++|+++|+|+++++.|+++++..++.++++++++|+.+..++++||+|+++...
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 368999999999999999988 67899999999999999999999999887899999998653344689999997321
Q ss_pred -----------hhhC----------hhhHHHHHHHHHhccccCeEEEEE
Q 038410 693 -----------ENVG----------HEYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 693 -----------~~~~----------~~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
.|-+ -+.+..+++++.++|||||++++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1111 133568899999999999999984
No 144
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.36 E-value=4e-12 Score=125.82 Aligned_cols=112 Identities=19% Similarity=0.225 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP 678 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~ 678 (850)
-..+..+++.+.++||++|||||||+|.++..+++.. ..+|++||+.++.++.|+++++..++. +|+++++|...-.
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTT
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhcc
Confidence 4556789999999999999999999999999999873 347999999999999999999998886 8999999976543
Q ss_pred -CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 679 -EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 679 -~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
...+||+|++......++. .+.+.||+||++++-.
T Consensus 137 ~~~apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGG-SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEE
Confidence 5578999999998887753 2666789999999843
No 145
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.36 E-value=4.1e-12 Score=120.00 Aligned_cols=122 Identities=25% Similarity=0.365 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCC--CCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEc
Q 038410 595 DLDVAQMRKVSLLIEKARVNK--GLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLC 672 (850)
Q Consensus 595 ~l~~aq~~~~~~~~~~l~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~ 672 (850)
.+...|.++.++.++.+.+++ ..-|||||||+|-.+..+... |...+|+|||+.|++.|.++--+ -.++++
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e------gdlil~ 100 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE------GDLILC 100 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh------cCeeee
Confidence 345567778888888888877 567999999999999888875 89999999999999999974221 257888
Q ss_pred ccC-CCC-CCCCccEEEEecchhh---------hChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 673 DYR-QMP-EVKKYDTIISCEMIEN---------VGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 673 D~~-~~~-~~~~fD~v~s~~~~~~---------~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
|+- -+| .+++||.++|+..+.+ .|.+.+..||..++.+|++|++.++|...
T Consensus 101 DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 101 DMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred ecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 865 455 6799999999987754 45566788999999999999999998754
No 146
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.36 E-value=7.7e-12 Score=125.01 Aligned_cols=151 Identities=23% Similarity=0.320 Sum_probs=111.7
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH-c------C----CCCCEEEEEcc
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKE-A------G----LQDHIRLYLCD 673 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~-~------g----l~~~v~~~~~D 673 (850)
...++.+..+++.+||..|||.|..+..+|++ |.+|+|+|+|+..++.+.+.... . + -.++|++.++|
T Consensus 27 ~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD 105 (218)
T PF05724_consen 27 VEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGD 105 (218)
T ss_dssp HHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-
T ss_pred HHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcc
Confidence 45555577888899999999999999999998 99999999999999998543221 0 0 12468999999
Q ss_pred cCCCCC--CCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCC
Q 038410 674 YRQMPE--VKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPS 751 (850)
Q Consensus 674 ~~~~~~--~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~ 751 (850)
+.++++ .++||+|+=...|..++.+..++|.+.+.++|||||.+++.++..+..... ..+| --+
T Consensus 106 fF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~----GPPf----------~v~ 171 (218)
T PF05724_consen 106 FFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME----GPPF----------SVT 171 (218)
T ss_dssp TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS----SSS--------------
T ss_pred cccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC----CcCC----------CCC
Confidence 999872 368999999999999999999999999999999999976666554332111 1112 125
Q ss_pred HHHHHHHHhcCCceEEEEeee
Q 038410 752 LNRITSAMTSSSRLCVEHLEN 772 (850)
Q Consensus 752 ~~~~~~~~~~~~gf~v~~~~~ 772 (850)
.+++.+.+. .+|+++.++.
T Consensus 172 ~~ev~~l~~--~~f~i~~l~~ 190 (218)
T PF05724_consen 172 EEEVRELFG--PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHHT--TTEEEEEEEE
T ss_pred HHHHHHHhc--CCcEEEEEec
Confidence 667766555 4899888776
No 147
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.35 E-value=1.4e-11 Score=130.01 Aligned_cols=107 Identities=16% Similarity=0.304 Sum_probs=88.0
Q ss_pred CCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEec---
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCE--- 690 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~--- 690 (850)
+..+|||+|||+|.+++.+++. ++++|+|+|+|+++++.|+++++..++.++++++++|+.+..+.++||+|+|+.
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCC
Confidence 3369999999999999999987 568999999999999999999999998777999999986643334899999973
Q ss_pred ----------chhhhC----------hhhHHHHHHHHHhccccCeEEEEEE
Q 038410 691 ----------MIENVG----------HEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 691 ----------~~~~~~----------~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
++.|-| -+.+..+++++.++|+|||.+++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 222222 1257789999999999999998743
No 148
>PTZ00146 fibrillarin; Provisional
Probab=99.33 E-value=3.1e-11 Score=123.57 Aligned_cols=139 Identities=12% Similarity=0.052 Sum_probs=99.0
Q ss_pred HHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC----CCCC
Q 038410 609 EKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP----EVKK 682 (850)
Q Consensus 609 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~----~~~~ 682 (850)
+.+.++++++|||+|||+|.++.++++.. ..+|++||+|+++.+...+.++.. .+|.+++.|++... ..++
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCC
Confidence 45678999999999999999999999983 468999999998765555554432 37899999986521 3468
Q ss_pred ccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHH----HHH
Q 038410 683 YDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRI----TSA 758 (850)
Q Consensus 683 fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~----~~~ 758 (850)
||+|++... .+ ++...++.+++++|||||.+++ .+-.... ..-|+++++ ++.
T Consensus 203 vDvV~~Dva---~p-dq~~il~~na~r~LKpGG~~vI-~ika~~i-------------------d~g~~pe~~f~~ev~~ 258 (293)
T PTZ00146 203 VDVIFADVA---QP-DQARIVALNAQYFLKNGGHFII-SIKANCI-------------------DSTAKPEVVFASEVQK 258 (293)
T ss_pred CCEEEEeCC---Cc-chHHHHHHHHHHhccCCCEEEE-EEecccc-------------------ccCCCHHHHHHHHHHH
Confidence 999998764 12 3456677899999999999999 3322110 011233333 355
Q ss_pred HhcCCceEEEEeeecCC
Q 038410 759 MTSSSRLCVEHLENIGI 775 (850)
Q Consensus 759 ~~~~~gf~v~~~~~~~~ 775 (850)
+.+ +||++++..++.+
T Consensus 259 L~~-~GF~~~e~v~L~P 274 (293)
T PTZ00146 259 LKK-EGLKPKEQLTLEP 274 (293)
T ss_pred HHH-cCCceEEEEecCC
Confidence 664 6999888877654
No 149
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.33 E-value=5.8e-12 Score=132.31 Aligned_cols=94 Identities=17% Similarity=0.324 Sum_probs=78.5
Q ss_pred CCCCeEEEEccCccHHHHHHHHh-c---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEE
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQ-T---GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIIS 688 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~-~---~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s 688 (850)
.+..+|||||||+|.++..+++. + +++|+|+|+|+++++.|+++. .++++.++|..+++ ++++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 45678999999999999999876 2 358999999999999998763 26899999999988 6789999999
Q ss_pred ecchhhhChhhHHHHHHHHHhccccCeEEEEEEe
Q 038410 689 CEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
+.. +..+++++|+|||||++++...
T Consensus 158 ~~~---------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 158 IYA---------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ecC---------CCCHHHHHhhccCCCEEEEEeC
Confidence 754 1235789999999999998654
No 150
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.31 E-value=3.1e-11 Score=128.26 Aligned_cols=115 Identities=18% Similarity=0.216 Sum_probs=89.8
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC-C-CC
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM-P-EV 680 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~-~-~~ 680 (850)
+.|++.+ .++.+|||+|||+|..+..+++.. +.+|+++|+|++|++.|++++....-.-+|.++++|+.+. + +.
T Consensus 55 ~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~ 132 (301)
T TIGR03438 55 DEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP 132 (301)
T ss_pred HHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc
Confidence 4455544 467899999999999999999883 6899999999999999999887643222578899999873 3 22
Q ss_pred C----CccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 681 K----KYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 681 ~----~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
. ...++++..++.++.+++...++++++++|+|||.+++..
T Consensus 133 ~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 133 EPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 1 2234444468899988888999999999999999999843
No 151
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.30 E-value=1.7e-11 Score=122.55 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=84.6
Q ss_pred HHHHHHHHcC-CCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-
Q 038410 603 KVSLLIEKAR-VNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP- 678 (850)
Q Consensus 603 ~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~- 678 (850)
|+..+.++.. ++++.+|||||||+|.++..++++ .+++|+|||+++ + ...+ +++++++|+.+.+
T Consensus 38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~-~v~~i~~D~~~~~~ 105 (209)
T PRK11188 38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIV-GVDFLQGDFRDELV 105 (209)
T ss_pred hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCC-CcEEEecCCCChHH
Confidence 4456666666 588999999999999999999998 346999999998 1 1233 6899999998842
Q ss_pred --------CCCCccEEEEecchhhhChhh---------HHHHHHHHHhccccCeEEEEEEec
Q 038410 679 --------EVKKYDTIISCEMIENVGHEY---------IEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 679 --------~~~~fD~v~s~~~~~~~~~~~---------~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
.+++||+|+|..+.++.+... ...+++++.++|||||.+++..+.
T Consensus 106 ~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 106 LKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 357899999987665544321 246899999999999999996543
No 152
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.29 E-value=6.1e-12 Score=137.98 Aligned_cols=60 Identities=22% Similarity=0.364 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHHhhccCceEeeCCceEEEEecCCc-eEEEeeCCcEEeCCEEEEecChHH
Q 038410 209 RHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-CSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 209 gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.-...+++.|.+.+++.|++|+++++|++|+.++++ +.|.+.++.++.||+||+|++...
T Consensus 106 ~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 106 DKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp --HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred CcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 355789999999999999999999999999998888 789886777899999999987543
No 153
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.29 E-value=1.9e-11 Score=137.11 Aligned_cols=56 Identities=16% Similarity=0.026 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+-+.|.+.+++.|++|+.+++|++|+.+++++.+.+.+|.++.||.||.|++...
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 44555777777789999999999999988777654455677899999999998754
No 154
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=2.7e-11 Score=127.99 Aligned_cols=111 Identities=23% Similarity=0.301 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-
Q 038410 602 RKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP- 678 (850)
Q Consensus 602 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~- 678 (850)
..+..+++.+.++++++|||||||+|.++..+++..+ .+|+++|+++++++.|+++++..|+. +++++++|..+..
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~ 145 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhccc
Confidence 3456778888899999999999999999999998743 47999999999999999999988874 7999999987655
Q ss_pred CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 679 EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 679 ~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
..++||+|++...+++++ ..+.+.|||||++++..
T Consensus 146 ~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 EFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 446899999987766653 23567899999988854
No 155
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.28 E-value=1.1e-11 Score=118.77 Aligned_cols=130 Identities=13% Similarity=0.054 Sum_probs=92.9
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCCEEEEEcccCCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEE
Q 038410 642 TGITLSEEQLKYTETKVKEAG--LQDHIRLYLCDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLL 718 (850)
Q Consensus 642 ~gid~s~~~~~~a~~~~~~~g--l~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~ 718 (850)
+|+|+|++|++.|+++.+..+ ...+++++++|+.+++ ++++||+|++..+++|+. ++..++++++|+|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence 589999999999988775322 2347999999999998 678999999999999995 57999999999999999999
Q ss_pred EEEecCCCCcCCCCcC---------ccc-c---cccccc-C--CCCCCCHHHHHHHHhcCCceEEEEeeecC
Q 038410 719 LQFSSVPDQCYDGHRL---------SPG-F---ITEYVF-P--GGCLPSLNRITSAMTSSSRLCVEHLENIG 774 (850)
Q Consensus 719 ~~~~~~~~~~~~~~~~---------~~~-~---~~~~i~-p--~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 774 (850)
+.++..++........ ... + ...|-+ + -..+|+.+++.+.+.+ +||.......+.
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~-aGF~~~~~~~~~ 149 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALE-AGFSSACHYEIS 149 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHH-cCCCcceEEECc
Confidence 9988765432111000 000 0 011100 0 0135788888777775 799876665543
No 156
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.27 E-value=5.2e-11 Score=129.02 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCc-eEEEeeCCcE-EeCCEEEEecChHH--HHHhhc
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-CSIVCVNGSQ-EFYNGCVMAVHAPD--ALRILG 274 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~-i~ad~VV~A~p~~~--~~~ll~ 274 (850)
..++.+|++.++++|++|++|++|+.|+..+++ ..+.+.+|++ ++|+.||.|.+..+ ++++..
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g 219 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAG 219 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhC
Confidence 478899999999999999999999999999885 5677888876 99999999998764 344443
No 157
>PHA03411 putative methyltransferase; Provisional
Probab=99.27 E-value=1.2e-10 Score=117.84 Aligned_cols=145 Identities=15% Similarity=0.160 Sum_probs=103.4
Q ss_pred CCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecc
Q 038410 613 VNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEM 691 (850)
Q Consensus 613 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~ 691 (850)
.+++.+|||+|||+|.++..++++ .+.+|+|+|+|+.+++.++++. + +++++++|+.++..+++||+|+++..
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~D~~e~~~~~kFDlIIsNPP 135 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----P-EAEWITSDVFEFESNEKFDVVISNPP 135 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----c-CCEEEECchhhhcccCCCcEEEEcCC
Confidence 345679999999999999998887 4689999999999999998863 2 68999999998775578999999999
Q ss_pred hhhhChhh------------------HHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHH
Q 038410 692 IENVGHEY------------------IEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLN 753 (850)
Q Consensus 692 ~~~~~~~~------------------~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 753 (850)
+.|.+..+ ...+++....+|+|+|.+.+..-+. ..| ..-.+..
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~--~~y-----------------~~sl~~~ 196 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR--PYY-----------------DGTMKSN 196 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc--ccc-----------------cccCCHH
Confidence 88864321 2467788889999999777641111 111 1123567
Q ss_pred HHHHHHhcCCceEEEEeeecCCcHHHHHHHHH
Q 038410 754 RITSAMTSSSRLCVEHLENIGIHFYQTLRCWR 785 (850)
Q Consensus 754 ~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~ 785 (850)
++.+.+.+ +||+...- .|.+-......|+
T Consensus 197 ~y~~~l~~-~g~~~~~~--~~~~~~~~~~~~~ 225 (279)
T PHA03411 197 KYLKWSKQ-TGLVTYAG--CGIDTSIYRDEWH 225 (279)
T ss_pred HHHHHHHh-cCcEecCC--CCcccceehhhcc
Confidence 77666665 79986432 2333333445553
No 158
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.27 E-value=6.5e-11 Score=127.04 Aligned_cols=112 Identities=20% Similarity=0.276 Sum_probs=88.2
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--CC
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--EV 680 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--~~ 680 (850)
++.+++.+ +++.+|||||||+|.+++.++++ ++++|+|+|+|+++++.|+++++..+. +++++++|+.+.. ..
T Consensus 242 Ve~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~ 317 (423)
T PRK14966 242 VEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSE 317 (423)
T ss_pred HHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccC
Confidence 34444443 45679999999999999999876 788999999999999999999988775 7999999986543 34
Q ss_pred CCccEEEEecchhhh-----------------------ChhhHHHHHHHHHhccccCeEEEE
Q 038410 681 KKYDTIISCEMIENV-----------------------GHEYIEEFFGCCESLLAEHGLLLL 719 (850)
Q Consensus 681 ~~fD~v~s~~~~~~~-----------------------~~~~~~~~~~~~~r~LkpgG~~~~ 719 (850)
++||+|+|+...-.- |-+.+..+++.+.+.|+|||.+++
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 689999998643110 112356788888899999999876
No 159
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.26 E-value=6.9e-11 Score=123.31 Aligned_cols=117 Identities=23% Similarity=0.390 Sum_probs=92.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCC
Q 038410 602 RKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEV 680 (850)
Q Consensus 602 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~ 680 (850)
..++.+++.+. ..+.+|||+|||+|.++..+++. ++++++|+|+|+.+++.|++++...++. +++++++|+.+..++
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 152 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPG 152 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcC
Confidence 34455555554 34569999999999999999987 6789999999999999999999988885 799999998764356
Q ss_pred CCccEEEEecchhh------hCh------------------hhHHHHHHHHHhccccCeEEEEE
Q 038410 681 KKYDTIISCEMIEN------VGH------------------EYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 681 ~~fD~v~s~~~~~~------~~~------------------~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
++||+|+++..+.. +.. ..+..+++++.++|||||.+++.
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 78999999754321 110 12357899999999999999983
No 160
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.26 E-value=1.3e-11 Score=118.95 Aligned_cols=151 Identities=18% Similarity=0.217 Sum_probs=112.8
Q ss_pred eEEEEccCccHHHHHHHHh-cC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-----CCCCccEEEEe
Q 038410 618 DVLEIGCGWGTLAIEIVKQ-TG--CKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-----EVKKYDTIISC 689 (850)
Q Consensus 618 ~vLDiGcG~G~~~~~la~~-~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-----~~~~fD~v~s~ 689 (850)
+|||||||.|.....+.+. ++ .+|.++|.|+..++..+++..... .++...+.|+..-. ..+++|.|+.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 8999999999999999887 44 799999999999999998865432 46776677764422 56899999999
Q ss_pred cchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccc--cccccCCCC---CCCHHHHHHHHhcCCc
Q 038410 690 EMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFI--TEYVFPGGC---LPSLNRITSAMTSSSR 764 (850)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~p~~~---~~~~~~~~~~~~~~~g 764 (850)
+++..++.+.++..+++++++|||||.+++-+...-+-....+.. ...+ +.|+-.+|. +-+.+++.+.+.+ +|
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~-~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~-ag 229 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKK-GQCISENFYVRGDGTRAYFFTEEELDELFTK-AG 229 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccC-CceeecceEEccCCceeeeccHHHHHHHHHh-cc
Confidence 999999999999999999999999999999988765532222211 1112 334444443 3456666666664 79
Q ss_pred eEEEEeee
Q 038410 765 LCVEHLEN 772 (850)
Q Consensus 765 f~v~~~~~ 772 (850)
|..+..+.
T Consensus 230 f~~~~~~~ 237 (264)
T KOG2361|consen 230 FEEVQLEV 237 (264)
T ss_pred cchhcccc
Confidence 98766543
No 161
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=1e-10 Score=130.53 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=95.3
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---CC
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---EV 680 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---~~ 680 (850)
..+...+++++|++|||+|||+|..+..+++. .+.+|+++|+|+++++.+++++++.|+ +++++++|..+++ ..
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhccc
Confidence 45566778899999999999999999999998 347999999999999999999999887 4789999998764 24
Q ss_pred CCccEEEEecc------hhhhC-------hh-------hHHHHHHHHHhccccCeEEEEEEecCC
Q 038410 681 KKYDTIISCEM------IENVG-------HE-------YIEEFFGCCESLLAEHGLLLLQFSSVP 725 (850)
Q Consensus 681 ~~fD~v~s~~~------~~~~~-------~~-------~~~~~~~~~~r~LkpgG~~~~~~~~~~ 725 (850)
++||.|++... +.+-+ .+ ....+++.+.++|||||++++.+.+..
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 68999995432 11111 11 134789999999999999999877543
No 162
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=1.2e-10 Score=123.27 Aligned_cols=115 Identities=23% Similarity=0.379 Sum_probs=90.8
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCC
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKK 682 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~ 682 (850)
++.++..+...++.+|||+|||+|.++..+++. +.++|+|+|+|+++++.|++++. .....+++++++|+.+....++
T Consensus 97 ~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~ 175 (275)
T PRK09328 97 VEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGR 175 (275)
T ss_pred HHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCc
Confidence 344445555677889999999999999999988 56899999999999999999987 3445589999999865434478
Q ss_pred ccEEEEecchhh------h------------------ChhhHHHHHHHHHhccccCeEEEE
Q 038410 683 YDTIISCEMIEN------V------------------GHEYIEEFFGCCESLLAEHGLLLL 719 (850)
Q Consensus 683 fD~v~s~~~~~~------~------------------~~~~~~~~~~~~~r~LkpgG~~~~ 719 (850)
||+|+++..+.- + +.+.+..+++++.++|||||.+++
T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 999999643210 1 113457789999999999999998
No 163
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.24 E-value=6.2e-11 Score=132.23 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
..+.++|.+.+++.|++++++++|++|+.+++++.|++.+| ++.||.||+|++++.
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 58899999999999999999999999998888888888777 699999999999874
No 164
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=6.6e-11 Score=114.84 Aligned_cols=111 Identities=16% Similarity=0.201 Sum_probs=88.0
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCc
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKY 683 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~f 683 (850)
+.+++.+++.++++|||||||+|.++..++++ +.+|+++|+|+.+++.+++++.. .++++++++|+.+++ ++.+|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCC
Confidence 57888888899999999999999999999998 88999999999999999998754 248999999999987 44579
Q ss_pred cEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEe
Q 038410 684 DTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 684 D~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
|.|+++-.++ +..+.+..+++.. .+.++|.++++.-
T Consensus 79 d~vi~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 79 YKVVGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred CEEEECCCcc-cHHHHHHHHHhcC--CCcceEEEEEEHH
Confidence 9999987654 4333333333321 2458888888653
No 165
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.23 E-value=8.4e-11 Score=119.75 Aligned_cols=106 Identities=16% Similarity=0.159 Sum_probs=89.9
Q ss_pred CCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-------CCCCc
Q 038410 613 VNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-------EVKKY 683 (850)
Q Consensus 613 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-------~~~~f 683 (850)
..++.+|||||||+|..++.+++. .+.+|+++|+++++++.|+++++++|+.++++++.+|+.+.- +.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 355779999999999999888876 357999999999999999999999999999999999987641 24689
Q ss_pred cEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 684 DTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 684 D~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
|.|+...- .+.+..+++.+.++|||||.+++....
T Consensus 146 D~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 99987532 245788999999999999999986654
No 166
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=9.6e-11 Score=131.54 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=96.5
Q ss_pred HHHHHcCCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCc
Q 038410 606 LLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKY 683 (850)
Q Consensus 606 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~f 683 (850)
..+..+.+.+|++|||+|||+|+.+.++++. .+.+|+++|+|+++++.+++++++.|+. +|+++++|..++.++++|
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~f 319 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQP 319 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCC
Confidence 4455667889999999999999999999886 2469999999999999999999999985 799999999887755789
Q ss_pred cEEEEe------cchh-------hhChh-------hHHHHHHHHHhccccCeEEEEEEecCC
Q 038410 684 DTIISC------EMIE-------NVGHE-------YIEEFFGCCESLLAEHGLLLLQFSSVP 725 (850)
Q Consensus 684 D~v~s~------~~~~-------~~~~~-------~~~~~~~~~~r~LkpgG~~~~~~~~~~ 725 (850)
|+|++- +++. +...+ ....+++++.++|||||+++..+.+..
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 999952 2221 11111 234689999999999999999887754
No 167
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1.8e-10 Score=128.03 Aligned_cols=120 Identities=20% Similarity=0.260 Sum_probs=97.3
Q ss_pred HHHHHcCCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--CCC
Q 038410 606 LLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--EVK 681 (850)
Q Consensus 606 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--~~~ 681 (850)
.+...+++++|.+|||+|||+|+.+.++++. .+.+|+++|+|+++++.+++++++.|+. ++++++.|..+++ ..+
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~ 306 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQD 306 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhc
Confidence 4455678899999999999999999999987 3679999999999999999999999986 6999999998875 357
Q ss_pred CccEEEEe------cchhhhC-------hh-------hHHHHHHHHHhccccCeEEEEEEecCCC
Q 038410 682 KYDTIISC------EMIENVG-------HE-------YIEEFFGCCESLLAEHGLLLLQFSSVPD 726 (850)
Q Consensus 682 ~fD~v~s~------~~~~~~~-------~~-------~~~~~~~~~~r~LkpgG~~~~~~~~~~~ 726 (850)
+||.|++. +++..-+ .+ ...+++.++.++|||||.++..+.+...
T Consensus 307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 89999963 2222111 11 2356799999999999999998887543
No 168
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.4e-10 Score=114.09 Aligned_cols=112 Identities=20% Similarity=0.273 Sum_probs=99.9
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCC
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKK 682 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~ 682 (850)
..|+.++++.||++|||.|.|+|.++.++|+. +..+|+.+|+.++.++.|++++++.++.++|++...|..+...+..
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 47899999999999999999999999999976 4579999999999999999999999999889999999988774459
Q ss_pred ccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 683 YDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 683 fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
||+|+.- ++ ++-.+++.++++|||||.+++-.++
T Consensus 164 vDav~LD-----mp--~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 164 VDAVFLD-----LP--DPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred cCEEEEc-----CC--ChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 9999874 43 4789999999999999999984443
No 169
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.6e-10 Score=109.97 Aligned_cols=66 Identities=41% Similarity=0.646 Sum_probs=49.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccC-CCchHHHHHHHHcCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNH-VEYPNMMEFLESLGVDMG 76 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~-~~~~~~~~l~~~lgl~~~ 76 (850)
.||+|||||+|||+|||+|+++|.+|+|+|++-.+||-++- |...|+. .-..+..++++++|++.+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~----------GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG----------GGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc----------cccccceeeecchHHHHHHHhCCcce
Confidence 49999999999999999999999999999999999983221 3333321 123455567777776653
No 170
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.21 E-value=1.4e-10 Score=131.34 Aligned_cols=106 Identities=20% Similarity=0.315 Sum_probs=86.9
Q ss_pred CCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecch-
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMI- 692 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~- 692 (850)
++.+|||||||+|.+++.+++. ++++|+++|+|+++++.|+++++..++.++++++++|+.+..+.++||+|+|+..+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 4568999999999999999887 68899999999999999999999999888999999997653334689999996421
Q ss_pred -------------hhh----------ChhhHHHHHHHHHhccccCeEEEEE
Q 038410 693 -------------ENV----------GHEYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 693 -------------~~~----------~~~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
.|- |-+.+..+++.+.++|||||.+++.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 111 1134566788999999999999884
No 171
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.21 E-value=3e-10 Score=126.47 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCC-cEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNG-SQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-~~i~ad~VV~A~p~~~ 268 (850)
.+.+.|++.+++.|++++.++.|+.+..+++++.+.+..+ .+++|+.||.|.++..
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 4555688888888999999999999999998865544443 6799999999998664
No 172
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=2.1e-10 Score=128.41 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=98.4
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC----
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---- 678 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---- 678 (850)
..+...+.+++|++|||+|||.|+.+.++++.. ..+|+++|+++++++.+++++++.|+. +|++++.|..+++
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccc
Confidence 455667788999999999999999999999872 469999999999999999999999986 6999999998765
Q ss_pred -CCCCccEEEEe------cchhhhChh--------------hHHHHHHHHHhccccCeEEEEEEecCC
Q 038410 679 -EVKKYDTIISC------EMIENVGHE--------------YIEEFFGCCESLLAEHGLLLLQFSSVP 725 (850)
Q Consensus 679 -~~~~fD~v~s~------~~~~~~~~~--------------~~~~~~~~~~r~LkpgG~~~~~~~~~~ 725 (850)
..++||.|++. +++.+-++. ...++++++.++|||||+++..+.+..
T Consensus 321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 14689999964 344443321 136789999999999999998877653
No 173
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.20 E-value=1.2e-10 Score=130.15 Aligned_cols=122 Identities=18% Similarity=0.153 Sum_probs=98.2
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---CC
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---EV 680 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---~~ 680 (850)
..+...+++++|++|||+|||.|+.+.++++. .+++|+++|+|+++++.+++++++.|+..++.+..+|..+.+ ..
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 46677788899999999999999999999987 457999999999999999999999998644555777766543 35
Q ss_pred CCccEEEEe------cchhhhChh--------------hHHHHHHHHHhccccCeEEEEEEecCCC
Q 038410 681 KKYDTIISC------EMIENVGHE--------------YIEEFFGCCESLLAEHGLLLLQFSSVPD 726 (850)
Q Consensus 681 ~~fD~v~s~------~~~~~~~~~--------------~~~~~~~~~~r~LkpgG~~~~~~~~~~~ 726 (850)
++||.|++. +++.+.++- ....+++++.++|||||+++.++.+...
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 789999953 455544331 1367899999999999999999887643
No 174
>PRK04457 spermidine synthase; Provisional
Probab=99.20 E-value=9.1e-11 Score=121.55 Aligned_cols=109 Identities=17% Similarity=0.271 Sum_probs=86.9
Q ss_pred CCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--CCCCccEEEEec
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--EVKKYDTIISCE 690 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--~~~~fD~v~s~~ 690 (850)
.++.+|||||||.|.++..+++. ++++|++||+++++++.|++.+...+..++++++.+|+.+.- ..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45679999999999999999887 788999999999999999998765555568999999986642 336899999753
Q ss_pred chh--hhCh-hhHHHHHHHHHhccccCeEEEEEEec
Q 038410 691 MIE--NVGH-EYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 691 ~~~--~~~~-~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
+. .++. -....+++++.++|+|||++++..+.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 21 1111 12378999999999999999996543
No 175
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.19 E-value=1.9e-10 Score=110.93 Aligned_cols=157 Identities=19% Similarity=0.208 Sum_probs=119.6
Q ss_pred CCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---C------CCCccE
Q 038410 616 GLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---E------VKKYDT 685 (850)
Q Consensus 616 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---~------~~~fD~ 685 (850)
+.+|||||||+|..+.++|++ +..+..-.|++++.....++.+.+.++++-..-+..|+.+-+ . .++||.
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 335999999999999999999 889999999999999999999988887643345666765543 1 358999
Q ss_pred EEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCc--CccccccccccCCCCCCCHHHHHHHHhcCC
Q 038410 686 IISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHR--LSPGFITEYVFPGGCLPSLNRITSAMTSSS 763 (850)
Q Consensus 686 v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~ 763 (850)
|++++|+|-++.+....+|+.+.++|+|||.+++.-....+..+.... ..+.+++. --|..-+...+++.+... +.
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~-rdp~~GiRD~e~v~~lA~-~~ 183 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRS-RDPEWGIRDIEDVEALAA-AH 183 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhc-CCCCcCccCHHHHHHHHH-HC
Confidence 999999999999889999999999999999999976554443332111 11222322 246667888888866555 57
Q ss_pred ceEEEEeeecC
Q 038410 764 RLCVEHLENIG 774 (850)
Q Consensus 764 gf~v~~~~~~~ 774 (850)
||+.++..++.
T Consensus 184 GL~l~~~~~MP 194 (204)
T PF06080_consen 184 GLELEEDIDMP 194 (204)
T ss_pred CCccCcccccC
Confidence 99988776654
No 176
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.19 E-value=1.8e-10 Score=119.91 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=94.1
Q ss_pred HHHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCcc
Q 038410 608 IEKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYD 684 (850)
Q Consensus 608 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD 684 (850)
...+.+++|++|||+|||.|+.+..+++.. ..+|+++|+|+.+++.+++++++.|+. +|++++.|.++++ ..++||
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCC
Confidence 446678899999999999999999999873 369999999999999999999999985 6999999988766 446799
Q ss_pred EEEEec------chhhhC-------hh-------hHHHHHHHHHhccccCeEEEEEEecCC
Q 038410 685 TIISCE------MIENVG-------HE-------YIEEFFGCCESLLAEHGLLLLQFSSVP 725 (850)
Q Consensus 685 ~v~s~~------~~~~~~-------~~-------~~~~~~~~~~r~LkpgG~~~~~~~~~~ 725 (850)
+|++.. ++.+-+ ++ ....+++.+.++|||||+++.++.+..
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 999642 222111 11 235689999999999999998877654
No 177
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=1.9e-10 Score=129.46 Aligned_cols=119 Identities=22% Similarity=0.265 Sum_probs=95.7
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--CC
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--EV 680 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--~~ 680 (850)
..+...+.++++++|||+|||+|+.+..+++. ++++|+++|+|+++++.+++++++.|+. +++++++|+.++. ..
T Consensus 240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc
Confidence 35556677889999999999999999999987 3679999999999999999999999986 5999999998764 23
Q ss_pred CCccEEEEecc------hhhhCh-------h-------hHHHHHHHHHhccccCeEEEEEEecC
Q 038410 681 KKYDTIISCEM------IENVGH-------E-------YIEEFFGCCESLLAEHGLLLLQFSSV 724 (850)
Q Consensus 681 ~~fD~v~s~~~------~~~~~~-------~-------~~~~~~~~~~r~LkpgG~~~~~~~~~ 724 (850)
++||+|++... +.+-++ . ....+++++.++|||||+++..+.+.
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 68999997632 222111 1 12468999999999999999876654
No 178
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.16 E-value=2.3e-10 Score=126.56 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcc-CceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHH
Q 038410 212 HSQIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 212 ~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~ 269 (850)
..++.+|++.+.+. |++|+.+++|++|+.. .|+|.+|+ ++||+||+|++++..
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCChh
Confidence 46788888887765 9999999999999753 67787775 789999999998753
No 179
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.14 E-value=4.9e-10 Score=115.81 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=97.0
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCc
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKY 683 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~f 683 (850)
..+.+...+.+..+|||||+|.|.++..++++ |+.+++..|+ |+.++.+++ .++|+++.+|+.+-.| . +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P-~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLP-V-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCS-S-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhc-c-c
Confidence 56667777888889999999999999999998 9999999999 888988887 4599999999873223 3 9
Q ss_pred cEEEEecchhhhChhhHHHHHHHHHhccccC--eEEEEEEecCCCCc
Q 038410 684 DTIISCEMIENVGHEYIEEFFGCCESLLAEH--GLLLLQFSSVPDQC 728 (850)
Q Consensus 684 D~v~s~~~~~~~~~~~~~~~~~~~~r~Lkpg--G~~~~~~~~~~~~~ 728 (850)
|+|+...++|+.+++.-..+++++++.|+|| |+++|.+...++..
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 9999999999999999999999999999999 99999998876654
No 180
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.14 E-value=5.8e-10 Score=114.92 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=85.3
Q ss_pred HHHHHHHcCC-CCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---
Q 038410 604 VSLLIEKARV-NKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--- 678 (850)
Q Consensus 604 ~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--- 678 (850)
++.++..+.. .++.+|||+|||+|.++..+++. ++.+|+|+|+|+++++.|+++++.++ ++++++|+.+..
T Consensus 74 v~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~ 149 (251)
T TIGR03704 74 VDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTA 149 (251)
T ss_pred HHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchh
Confidence 3444444432 23468999999999999999987 57799999999999999999998765 478999986532
Q ss_pred CCCCccEEEEecchh------hhC------------------hhhHHHHHHHHHhccccCeEEEEE
Q 038410 679 EVKKYDTIISCEMIE------NVG------------------HEYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 679 ~~~~fD~v~s~~~~~------~~~------------------~~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
..++||+|+++..+. .++ .+-+..+++.+.++|||||++++.
T Consensus 150 ~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 150 LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 135799999986432 111 112457888899999999999984
No 181
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.13 E-value=6e-10 Score=125.55 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhc----cC--ceEeeCCceEEEEecCC-ceEEEeeCCcEEeCCEEEEecChHHH
Q 038410 212 HSQIDKVSEQLKS----WG--IQIRMSCEVYSVFPADE-GCSIVCVNGSQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 212 ~~l~~~L~~~l~~----~G--~~i~~~~~V~~I~~~~~-~v~V~~~~G~~i~ad~VV~A~p~~~~ 269 (850)
..++.+|++.+++ .| ++|+++++|++|+.+++ .+.|+|.+| ++.||+||+|++++..
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 5788999999988 77 78999999999998844 578988888 5999999999998864
No 182
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.13 E-value=8.1e-10 Score=118.31 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeC-CcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVN-GSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~-G~~i~ad~VV~A~p~~~ 268 (850)
.+.+.|.+.+++.|++++.+++|+++..+++++.+...+ +.++++|.||.|++...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 466677777777899999999999999988887666543 45799999999999764
No 183
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.13 E-value=4.1e-10 Score=99.45 Aligned_cols=101 Identities=28% Similarity=0.506 Sum_probs=86.0
Q ss_pred eEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--CCCCccEEEEecchhhh
Q 038410 618 DVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--EVKKYDTIISCEMIENV 695 (850)
Q Consensus 618 ~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--~~~~fD~v~s~~~~~~~ 695 (850)
++||+|||.|.++..+++..+.+++++|+++++++.+++.... ....+++++..|..+.. ..++||+|++..++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA-LLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-ccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 5899999999999999985578999999999999999864433 33457999999988876 45789999999999984
Q ss_pred ChhhHHHHHHHHHhccccCeEEEEE
Q 038410 696 GHEYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 696 ~~~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
.+....+++.+.+.|||||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 356899999999999999999985
No 184
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.13 E-value=2.2e-10 Score=110.74 Aligned_cols=102 Identities=17% Similarity=0.196 Sum_probs=77.8
Q ss_pred CCCC-eEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecc
Q 038410 614 NKGL-DVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEM 691 (850)
Q Consensus 614 ~~~~-~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~ 691 (850)
.++. .++|+|||+|.-++-+|.. --+|+|+|+|++|++.|++.....-.....++...+..++. .+++.|+|++...
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 4444 7899999999777888876 56999999999999999876432211112333344445554 5789999999999
Q ss_pred hhhhChhhHHHHHHHHHhccccCe-EEEE
Q 038410 692 IENVGHEYIEEFFGCCESLLAEHG-LLLL 719 (850)
Q Consensus 692 ~~~~~~~~~~~~~~~~~r~LkpgG-~~~~ 719 (850)
+|++ +++.++++++|+||+.| .+++
T Consensus 110 ~HWF---dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 VHWF---DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HHhh---chHHHHHHHHHHcCCCCCEEEE
Confidence 9999 47999999999999877 6555
No 185
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.13 E-value=7.8e-10 Score=111.69 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=89.8
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--- 678 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--- 678 (850)
+..|+..++++||++|||.|.|+|.++..+++. +..+|+..|+.++.++.|+++++..|+.++|++.+.|+.+..
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 468899999999999999999999999999987 668999999999999999999999999999999999985422
Q ss_pred -CCCCccEEEEecchhhhChhhHHHHHHHHHhcc-ccCeEEEEEE
Q 038410 679 -EVKKYDTIISCEMIENVGHEYIEEFFGCCESLL-AEHGLLLLQF 721 (850)
Q Consensus 679 -~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~L-kpgG~~~~~~ 721 (850)
.+..||.|+.- +| ++-.++..+.+.| ||||++++-.
T Consensus 109 ~~~~~~DavfLD-----lp--~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 109 ELESDFDAVFLD-----LP--DPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp T-TTSEEEEEEE-----SS--SGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred cccCcccEEEEe-----CC--CHHHHHHHHHHHHhcCCceEEEEC
Confidence 23689999875 33 2456788899999 8999999843
No 186
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.12 E-value=4.5e-10 Score=110.92 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEc
Q 038410 595 DLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLC 672 (850)
Q Consensus 595 ~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~ 672 (850)
.....+-+.+..+++.. ...+||||||+.|.-++++|+. .+++|+.+|++++..+.|++.++++|+.++|+++.+
T Consensus 28 ~i~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp SHHHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred ccCHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 34455556666666654 3469999999999999999987 478999999999999999999999999999999999
Q ss_pred ccCCCC-------CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCC
Q 038410 673 DYRQMP-------EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVP 725 (850)
Q Consensus 673 D~~~~~-------~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~ 725 (850)
|+.+.- ..++||.|+.-. ...++..+++.+.++|+|||.+++......
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred ccHhhHHHHHhccCCCceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEcccccc
Confidence 986531 136899999875 235689999999999999999999765543
No 187
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.12 E-value=1.9e-09 Score=119.80 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhccC-ceEeeCCceEEEEecCCceEEEee-CCcEEeCCEEEEecChHHHH
Q 038410 213 SQIDKVSEQLKSWG-IQIRMSCEVYSVFPADEGCSIVCV-NGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 213 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~-~G~~i~ad~VV~A~p~~~~~ 270 (850)
.+.+.|.+++.+.+ ++++.+++|+.++.+++.+.|++. +|++++||.||-|-+.+...
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~v 164 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAV 164 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHH
Confidence 67788888888777 799999999999999999888888 99999999999999977544
No 188
>PRK10015 oxidoreductase; Provisional
Probab=99.12 E-value=1.1e-09 Score=122.92 Aligned_cols=56 Identities=14% Similarity=-0.032 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+-+.|.+.+++.|++++.+++|+.|..+++++.+...++.+++||.||.|.+...
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence 34455777777789999999999999988777754444555799999999998754
No 189
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.11 E-value=6.4e-10 Score=109.27 Aligned_cols=110 Identities=23% Similarity=0.271 Sum_probs=94.3
Q ss_pred CCCCCCeEEEEccCccHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEE-cccCCCC---CCCCccE
Q 038410 612 RVNKGLDVLEIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYL-CDYRQMP---EVKKYDT 685 (850)
Q Consensus 612 ~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~-~D~~~~~---~~~~fD~ 685 (850)
...+..+|||||.+.|.-++++|.. + +.+++.||+++++.+.|++++++.|+.++|+++. +|..+.- ..++||+
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 3457789999999999999999998 5 6799999999999999999999999999999999 5865543 3589999
Q ss_pred EEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCC
Q 038410 686 IISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPD 726 (850)
Q Consensus 686 v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~ 726 (850)
|+.-. ...+++.+|+.+.++|+|||.+++..+..+.
T Consensus 136 iFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 136 VFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 99752 3457899999999999999999997776543
No 190
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.11 E-value=4.9e-10 Score=108.43 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=99.9
Q ss_pred CCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCC-CCCccEEEEecchh
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPE-VKKYDTIISCEMIE 693 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~-~~~fD~v~s~~~~~ 693 (850)
...+.||+|+|.|+.+..+.-..--+|..||.++..++.|++.+... ...-.++.+.-++++.| +++||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 35689999999999999876654569999999999999999876431 12235788888998875 47999999999999
Q ss_pred hhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhcCCceEEEEeee
Q 038410 694 NVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRLCVEHLEN 772 (850)
Q Consensus 694 ~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~ 772 (850)
|+.++++-.||++|...|+|+|.+++-+-...... ..+.....- -..+...+.+.+.+ +|++++..+.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~-~~~D~~DsS---------vTRs~~~~~~lF~~-AGl~~v~~~~ 201 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF-DEFDEEDSS---------VTRSDEHFRELFKQ-AGLRLVKEEK 201 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE-EEEETTTTE---------EEEEHHHHHHHHHH-CT-EEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC-cccCCccCe---------eecCHHHHHHHHHH-cCCEEEEecc
Confidence 99999999999999999999999999765443321 111111111 12245666666665 7999987654
No 191
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.10 E-value=5.8e-10 Score=110.38 Aligned_cols=104 Identities=17% Similarity=0.276 Sum_probs=77.7
Q ss_pred HHHHHc-CCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC----
Q 038410 606 LLIEKA-RVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---- 678 (850)
Q Consensus 606 ~~~~~l-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---- 678 (850)
.+.++. .+++|++|||||||+|.++..++++ ..++|+++|+|+.+ .. .+++++++|+.+..
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~ 89 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNK 89 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHH
Confidence 344433 4588999999999999999999887 34689999999864 12 26889999987632
Q ss_pred -----CCCCccEEEEecc--------hhhh-ChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 679 -----EVKKYDTIISCEM--------IENV-GHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 679 -----~~~~fD~v~s~~~--------~~~~-~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
+.++||+|++... +.|. ..+....+++++.++|||||++++..
T Consensus 90 l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 90 IRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3468999998643 2222 11234789999999999999999964
No 192
>PRK00811 spermidine synthase; Provisional
Probab=99.10 E-value=3.8e-10 Score=118.44 Aligned_cols=108 Identities=24% Similarity=0.302 Sum_probs=84.8
Q ss_pred CCCCeEEEEccCccHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHc--CC--CCCEEEEEcccCCCC--CCCCccEE
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYTETKVKEA--GL--QDHIRLYLCDYRQMP--EVKKYDTI 686 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~--gl--~~~v~~~~~D~~~~~--~~~~fD~v 686 (850)
+.+.+||+||||.|..+..+++++ ..+|++||+++++++.|++.+... +. .++++++.+|+++.- ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 456799999999999999999874 468999999999999999988643 22 458999999987643 45789999
Q ss_pred EEecchhhhChh--hHHHHHHHHHhccccCeEEEEEE
Q 038410 687 ISCEMIENVGHE--YIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 687 ~s~~~~~~~~~~--~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
++...-.+.+.. .-..+++.+++.|||||.++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 986432221111 23678999999999999999853
No 193
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=9.9e-10 Score=114.53 Aligned_cols=101 Identities=23% Similarity=0.421 Sum_probs=82.8
Q ss_pred eEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecch----
Q 038410 618 DVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMI---- 692 (850)
Q Consensus 618 ~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~---- 692 (850)
+|||||||+|.+++.++.+ +.++|+|+|+|++.++.|+++++.+|+ .++.+++.|+.+--. ++||+|+|+...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC-CceeEEEeCCCCCCCc
Confidence 8999999999999999998 567999999999999999999999998 577777778554322 599999999532
Q ss_pred -hhh------------------ChhhHHHHHHHHHhccccCeEEEEE
Q 038410 693 -ENV------------------GHEYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 693 -~~~------------------~~~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
.+. |-+-+..++.++.+.|+|||.+++.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 000 2235678899999999999998884
No 194
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.09 E-value=8.5e-10 Score=120.51 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=88.7
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCEEEEEcccCCCC-----CCCCccEEE
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQ-DHIRLYLCDYRQMP-----EVKKYDTII 687 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~v~~~~~D~~~~~-----~~~~fD~v~ 687 (850)
.++.+|||+|||+|++++.++.....+|++||+|+.+++.|+++++.+++. ++++++++|+.+.. ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 468899999999999999877653349999999999999999999999986 58999999987652 245899999
Q ss_pred EecchhhhCh-------hhHHHHHHHHHhccccCeEEEEEEec
Q 038410 688 SCEMIENVGH-------EYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 688 s~~~~~~~~~-------~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
+......-.. +.+..+++.+.++|||||.++..+.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9865422211 24677778899999999999985543
No 195
>PLN02476 O-methyltransferase
Probab=99.09 E-value=9.7e-10 Score=112.71 Aligned_cols=117 Identities=11% Similarity=0.115 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP 678 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~ 678 (850)
.+.+..+++. .+..+||||||++|..++++|+. .+.+|+++|.+++.++.|+++++++|+.++|+++.+|+.+.-
T Consensus 107 g~lL~~L~~~---~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L 183 (278)
T PLN02476 107 AQLLAMLVQI---LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESL 183 (278)
T ss_pred HHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 3344444444 45679999999999999999985 367899999999999999999999999999999999986532
Q ss_pred -------CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCC
Q 038410 679 -------EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVP 725 (850)
Q Consensus 679 -------~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~ 725 (850)
..++||.|+.-.. ..++..+++.+.++|+|||.+++..+...
T Consensus 184 ~~l~~~~~~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 184 KSMIQNGEGSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred HHHHhcccCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 1368999998643 35789999999999999999999766543
No 196
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.07 E-value=3.1e-09 Score=120.37 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCC-ceEEEee---CC--cEEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADE-GCSIVCV---NG--SQEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v~V~~~---~G--~~i~ad~VV~A~p~~~ 268 (850)
..++.+|.+.+++.|++|+++++|++|+.+++ +|.|++. +| .+++||+||+|++++.
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 58999999999999999999999999998654 5766532 34 2689999999999875
No 197
>PRK06847 hypothetical protein; Provisional
Probab=99.06 E-value=2e-09 Score=119.55 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+.+.|.+.+.+.|++|+++++|++|+.+++++.|++.+|+++.||.||.|.+.+.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 56677777777779999999999999998888999999999999999999999764
No 198
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.05 E-value=1.1e-09 Score=107.81 Aligned_cols=103 Identities=24% Similarity=0.342 Sum_probs=83.9
Q ss_pred eEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC-C---CCCCccEEEEecch
Q 038410 618 DVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM-P---EVKKYDTIISCEMI 692 (850)
Q Consensus 618 ~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~-~---~~~~fD~v~s~~~~ 692 (850)
.+||||||.|.+...+|+. ++..++|||++...+..+.+++.+.++. |+.++++|+..+ . +++++|.|+..+.=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 8999999999999999998 9999999999999999999999999986 999999998883 2 56899999999866
Q ss_pred hhhChhh------HHHHHHHHHhccccCeEEEEEE
Q 038410 693 ENVGHEY------IEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 693 ~~~~~~~------~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
.|...++ -+.+++.++++|||||.+.+.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 5553322 3679999999999999998843
No 199
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.05 E-value=1e-08 Score=112.18 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=55.3
Q ss_pred cEEEecCCh---HHHHHHHHHHhhccCceEeeCCceEEEEecCCc-eEEEeeCCcEEeCCEEEEecChHH
Q 038410 203 QCVTVRRHS---HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-CSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 203 ~~~~~~gG~---~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.++.|..|. ..++.+|+..+++.|+.|..||+|++|....++ +.|.|..|. |++.+||-|++.|+
T Consensus 175 ~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 175 GLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWA 243 (856)
T ss_pred eeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHH
Confidence 344554444 579999999999999999999999999887665 689999996 99999999999986
No 200
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.05 E-value=2.4e-09 Score=110.80 Aligned_cols=37 Identities=51% Similarity=0.878 Sum_probs=35.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
||+|||||+|||+||++|+++|++|+|+|++..+||.
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg 63 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG 63 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 8999999999999999999999999999999998884
No 201
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.04 E-value=3.2e-09 Score=109.44 Aligned_cols=37 Identities=43% Similarity=0.759 Sum_probs=35.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
||+|||||+|||+||+.|+++|.+|+|+|++..+||.
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg 59 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG 59 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 8999999999999999999999999999999999874
No 202
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.04 E-value=1e-09 Score=123.31 Aligned_cols=133 Identities=15% Similarity=0.278 Sum_probs=100.4
Q ss_pred cCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHH
Q 038410 578 LGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETK 657 (850)
Q Consensus 578 l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~ 657 (850)
.+..+.++..-|-+.+. ......++.+++.+.+.++.+|||+|||+|.+++.+++. +.+|+|+|+|+++++.|+++
T Consensus 263 ~g~~f~~~~~~F~q~n~---~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n 338 (443)
T PRK13168 263 FGLRLAFSPRDFIQVNA---QVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERAREN 338 (443)
T ss_pred CCeEEEECCCCeEEcCH---HHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Confidence 34455566655533321 122456677888888889999999999999999999987 68999999999999999999
Q ss_pred HHHcCCCCCEEEEEcccCCCC-----CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 658 VKEAGLQDHIRLYLCDYRQMP-----EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 658 ~~~~gl~~~v~~~~~D~~~~~-----~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
++.+++. +++++++|+.+.. .+++||+|++...-.- ....++.+.+ ++|++.++++.
T Consensus 339 ~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 339 ARRNGLD-NVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred HHHcCCC-ceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEEe
Confidence 9988885 7999999986531 2467999998754332 2345566655 68999888854
No 203
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.04 E-value=3.8e-09 Score=117.94 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+.+.|.+.+++.|++++.+++|++|+.+++++.|++.+|+++.||.||.|.+.+.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 57777888888889999999999999999888999988888899999999998764
No 204
>PHA03412 putative methyltransferase; Provisional
Probab=99.03 E-value=1.3e-09 Score=107.73 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=77.0
Q ss_pred CCCeEEEEccCccHHHHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEec
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQ----TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCE 690 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~----~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~ 690 (850)
.+.+|||+|||+|.++..++++ ...+|+++|+++.+++.|+++.. ++++++.|+.+.+.+++||+|+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 3679999999999999999875 25699999999999999997742 5889999998766557899999997
Q ss_pred chhhh----------ChhhHHHHHHHHHhccccCeE
Q 038410 691 MIENV----------GHEYIEEFFGCCESLLAEHGL 716 (850)
Q Consensus 691 ~~~~~----------~~~~~~~~~~~~~r~LkpgG~ 716 (850)
.+.-. +......+++.+.++++||+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 76522 222356688999997777764
No 205
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.03 E-value=7.5e-09 Score=117.30 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhccC-ceEeeCCceEEEEecCCc-eEEEee---CCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWG-IQIRMSCEVYSVFPADEG-CSIVCV---NGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~-v~V~~~---~G~--~i~ad~VV~A~p~~~ 268 (850)
..++++|.+.+++.| ++|+++++|++|+.++++ |.|++. +|+ ++.|++||+|++++.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 578999999998887 799999999999986654 777653 353 589999999999875
No 206
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.03 E-value=5.4e-09 Score=116.24 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHH
Q 038410 210 HSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 210 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~ 269 (850)
....+.+.|.+.+++.|++|+++++|++|+.+++.+.|++ +++++.||.||+|++....
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s~ 161 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLSY 161 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCccc
Confidence 4468899999999999999999999999988877788877 4567999999999997654
No 207
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.03 E-value=1.8e-09 Score=121.39 Aligned_cols=38 Identities=47% Similarity=0.778 Sum_probs=36.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
|+|+|||||+|||+||.+|.+.|++|+|||+++.+||.
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~ 48 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL 48 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcce
Confidence 68999999999999999999999999999999999994
No 208
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.02 E-value=4.4e-09 Score=121.57 Aligned_cols=57 Identities=16% Similarity=0.027 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEee---CC--cEEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCV---NG--SQEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G--~~i~ad~VV~A~p~~~ 268 (850)
..++.++++.+.++|++|+.+++|++|..+++++ .|++. +| .++.|++||.|++++.
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 4688888888889999999999999999988775 35542 23 3689999999999885
No 209
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.02 E-value=3.9e-09 Score=117.78 Aligned_cols=56 Identities=14% Similarity=0.056 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhccC-ceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWG-IQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+.+.|.+.+.+.| ++|+.+++|++|+.+++++.|++.+|+++.+|.||.|.+...
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence 57777888887777 999999999999998888999999998899999999988764
No 210
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=5.6e-09 Score=102.45 Aligned_cols=112 Identities=18% Similarity=0.305 Sum_probs=91.8
Q ss_pred CCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC-----C-CCCCccEE
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM-----P-EVKKYDTI 686 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~-----~-~~~~fD~v 686 (850)
..+.++||+|||+|.++..++.. +.++|++||.|+.++..|.+++++.++.+++.+++-+.+.- + .++++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 34568999999999999999887 88999999999999999999999999999999996654332 2 45899999
Q ss_pred EEecchh------h------------------hChhhHHHHHHHHHhccccCeEEEEEEecCC
Q 038410 687 ISCEMIE------N------------------VGHEYIEEFFGCCESLLAEHGLLLLQFSSVP 725 (850)
Q Consensus 687 ~s~~~~~------~------------------~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~ 725 (850)
+|+...- . =|.+++..++.-+.|.|+|||.+.+.....+
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~ 289 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERK 289 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccc
Confidence 9995320 0 0335677889999999999999999776543
No 211
>PRK07588 hypothetical protein; Provisional
Probab=99.00 E-value=3.7e-09 Score=118.03 Aligned_cols=56 Identities=5% Similarity=0.079 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~ 269 (850)
.+.+.|.+.+.. |++|+++++|++|+.++++|.|++++|+++++|.||.|.+.+..
T Consensus 104 ~l~~~L~~~~~~-~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 104 DLAAAIYTAIDG-QVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred HHHHHHHHhhhc-CeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 455556665543 78999999999999999999999999998999999999987643
No 212
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.00 E-value=1.1e-09 Score=110.35 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=38.9
Q ss_pred HHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChH
Q 038410 215 IDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 215 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
.+.|.+.+++.+.+|+++++|++|++.+++|.|++.++++++||+||+|++..
T Consensus 85 ~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 85 LDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 33444455555888999999999999999999999999789999999999964
No 213
>PLN02366 spermidine synthase
Probab=99.00 E-value=1e-09 Score=115.54 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=84.7
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHc--CC-CCCEEEEEcccCCCC---CCCCccEE
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYTETKVKEA--GL-QDHIRLYLCDYRQMP---EVKKYDTI 686 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~--gl-~~~v~~~~~D~~~~~---~~~~fD~v 686 (850)
++..+||+||||.|..+..++++++ .+|+.||+++++++.|++.+... ++ .++++++.+|..+.- +.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5578999999999999999998854 58999999999999999987653 23 348999999975542 24689999
Q ss_pred EEecchhhhChh--hHHHHHHHHHhccccCeEEEEEE
Q 038410 687 ISCEMIENVGHE--YIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 687 ~s~~~~~~~~~~--~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
++...-.+.+.. .-..+++.++++|+|||.++.+.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 986533222111 23678999999999999998864
No 214
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.00 E-value=2.6e-09 Score=126.31 Aligned_cols=106 Identities=21% Similarity=0.199 Sum_probs=87.8
Q ss_pred CCCeEEEEccCccHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCEEEEEcccCCCC--CCCCccEEEEec
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYTETKVKEAGLQ-DHIRLYLCDYRQMP--EVKKYDTIISCE 690 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~gl~-~~v~~~~~D~~~~~--~~~~fD~v~s~~ 690 (850)
+|.+|||+|||+|.+++.+++. |+ +|++||+|+.+++.|+++++.+|+. ++++++++|+.+.. ..++||+|++..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 5789999999999999999987 65 6999999999999999999999986 68999999976542 246899999974
Q ss_pred chh-------h--hChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 691 MIE-------N--VGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 691 ~~~-------~--~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
... . -..+++..+++.+.++|+|||.+++.+
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 321 0 012457889999999999999998854
No 215
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.00 E-value=2.9e-09 Score=118.32 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=55.7
Q ss_pred EEEecCCh---HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHH
Q 038410 204 CVTVRRHS---HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 204 ~~~~~gG~---~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~ 269 (850)
.+.+.+|. ..++.+|.+.+++ |++|+.+++|++|+.+++++.|++.+|..+.||+||+|++++..
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 34444444 5899999999999 99999999999999988889999999977899999999998853
No 216
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.00 E-value=5.9e-09 Score=116.73 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhccC-ceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHH
Q 038410 213 SQIDKVSEQLKSWG-IQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 213 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~ 270 (850)
.+.+.|.+.+.+.+ ++++.+++|++++.+++++.|++.+|+++.||.||.|.+.+...
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence 46667777776654 89999999999998888899999899889999999999877543
No 217
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.99 E-value=3.5e-09 Score=110.85 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=82.7
Q ss_pred CCCCeEEEEccCccHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCEEEEEcccCCCC--CCCCccEEE
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYTETKVKEAG--L-QDHIRLYLCDYRQMP--EVKKYDTII 687 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~g--l-~~~v~~~~~D~~~~~--~~~~fD~v~ 687 (850)
+.+.+||+||||+|.++..++++. ..+|+++|+++++++.+++.+...+ + ..+++++..|..+.- ..++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345599999999999999998874 4689999999999999999875432 1 247889998876532 347899999
Q ss_pred EecchhhhChhh--HHHHHHHHHhccccCeEEEEE
Q 038410 688 SCEMIENVGHEY--IEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 688 s~~~~~~~~~~~--~~~~~~~~~r~LkpgG~~~~~ 720 (850)
+......-+..+ ...+++.+.+.|+|||.++++
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 875432221122 468899999999999999986
No 218
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.99 E-value=2.9e-09 Score=114.06 Aligned_cols=111 Identities=19% Similarity=0.263 Sum_probs=84.1
Q ss_pred HHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--CC
Q 038410 603 KVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--EV 680 (850)
Q Consensus 603 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--~~ 680 (850)
.++.+.+.+...++.+|||+|||+|.+++.+|+. +.+|+|+|+|+++++.|+++++.+++ ++++++++|+.++. ..
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcC
Confidence 4444445554345689999999999999999996 88999999999999999999999998 48999999997754 33
Q ss_pred CCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEE
Q 038410 681 KKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 681 ~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
++||+|++...-.-++ ....+.+ ..++|++.++++
T Consensus 239 ~~~D~Vv~dPPr~G~~----~~~~~~l-~~~~~~~ivyvs 273 (315)
T PRK03522 239 EVPDLVLVNPPRRGIG----KELCDYL-SQMAPRFILYSS 273 (315)
T ss_pred CCCeEEEECCCCCCcc----HHHHHHH-HHcCCCeEEEEE
Confidence 5799999986522221 2333333 336788777764
No 219
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.99 E-value=3.7e-09 Score=118.63 Aligned_cols=62 Identities=19% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHH-HHhhc
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDA-LRILG 274 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~-~~ll~ 274 (850)
.+.+.|.+.+++.|++|+.+++|++|+.++++|.|++.+|++++||.||.|.+.+.. .+.+.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 566778888877899999999999999998899999999988999999999987753 34443
No 220
>PRK06753 hypothetical protein; Provisional
Probab=98.99 E-value=5.4e-09 Score=116.00 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~ 269 (850)
.+.+.|.+.++ +.+|+++++|++|+.+++++.|++.+|+++.+|.||-|.+.+..
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 45566666665 45899999999999888889999999999999999999987643
No 221
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.99 E-value=3.9e-08 Score=107.69 Aligned_cols=248 Identities=16% Similarity=0.180 Sum_probs=141.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEee---------------------CCeeeecceeeccCCC
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI---------------------DGVDLDIGFMLFNHVE 60 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~---------------------~G~~~d~G~~~~~~~~ 60 (850)
||||+|.|+.-.-.|..|++.|.+|+.+|+++.-||...|... ..|.+|+-+..+. .
T Consensus 6 DviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~--a 83 (438)
T PF00996_consen 6 DVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY--A 83 (438)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE--T
T ss_pred eEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh--c
Confidence 8999999999999999999999999999999999998888763 1266777777662 4
Q ss_pred chHHHHHHHHcCCCccc--ccceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhc-
Q 038410 61 YPNMMEFLESLGVDMGT--SDMSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELE- 137 (850)
Q Consensus 61 ~~~~~~l~~~lgl~~~~--~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (850)
...+.+++-+-++.... ....-.+.+.+++....+. .-...+. .+++... .-+.+++|......+.....
T Consensus 84 ~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~--sr~dvf~--s~~lsl~---eKR~lmkFl~~v~~~~~~~~~ 156 (438)
T PF00996_consen 84 RGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPC--SREDVFK--SKLLSLF---EKRRLMKFLKFVANYEEDDPS 156 (438)
T ss_dssp TSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--S--SHHHHHC---TTS-HH---HHHHHHHHHHHHHHGCTTBGG
T ss_pred cCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCC--CHHHhhc--CCCccHH---HHHHHHHHHHHHhhcccCCcc
Confidence 56777777777765432 1122223334444433322 0011111 0111111 11223333332222211110
Q ss_pred CCCCC-CCCCcHHHHHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHH----HHHHHhhhcCCCcEEEecCChH
Q 038410 138 NSPDI-DRNETLGHFIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVL----SFCRLFQLFGHPQCVTVRRHSH 212 (850)
Q Consensus 138 ~~~~~-~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~gG~~ 212 (850)
..... ....++.++++..++++...+.+...+ +++..+ ..+ ..|+...+ .|+..+..++...+.++.-|.+
T Consensus 157 ~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~hai--aL~~~~-~~~-~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~G 232 (438)
T PF00996_consen 157 THKGLDPEKKTFQELLKKFGLSENLIDFIGHAI--ALSLDD-SYL-TEPAREGLERIKLYLSSLGRYGKSPFLYPLYGLG 232 (438)
T ss_dssp GSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHT--S-SSSS-GGG-GSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-TT
T ss_pred hhhccccccccHHHHHHhcCCCHHHHHHHHHhh--hhccCc-ccc-cccHHHHHHHHHHHHHHHhccCCCCEEEEccCCc
Confidence 11111 136789999999999888766444322 222222 111 22333333 3444667778889999999999
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCc-e-EEEeeCCcEEeCCEEEEe
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-C-SIVCVNGSQEFYNGCVMA 263 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v-~V~~~~G~~i~ad~VV~A 263 (850)
.|++++++...=.|+...+|++|.+|..+.++ + .|. .+|++++|++||..
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIGD 284 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEEE
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEEC
Confidence 99999999888889999999999999985444 3 455 48889999999954
No 222
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.99 E-value=1.3e-09 Score=116.36 Aligned_cols=164 Identities=18% Similarity=0.257 Sum_probs=134.6
Q ss_pred HHHHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc
Q 038410 558 QARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT 637 (850)
Q Consensus 558 ~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~ 637 (850)
...+.+++.|+...++|..-++..++.+.- .+....++...+.-....-+..+.++..++|+|||.|....+++...
T Consensus 56 ~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~---~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~ 132 (364)
T KOG1269|consen 56 DLPEQIAKYYNNSTDLYERNWGQSFHFGRI---PEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK 132 (364)
T ss_pred ccchHHHHHhcccchhhhhhhccchhccCc---cchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhc
Confidence 566778999999999999988877665333 23333444422222223334457899999999999999999999887
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeE
Q 038410 638 GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGL 716 (850)
Q Consensus 638 ~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~ 716 (850)
++.++|+|.++.++..+.......++.++..++.+|+.+.+ +++.||.+.+.++.+|.+. ....+++++|++||||+
T Consensus 133 ~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~--~~~~y~Ei~rv~kpGG~ 210 (364)
T KOG1269|consen 133 KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPD--LEKVYAEIYRVLKPGGL 210 (364)
T ss_pred cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCc--HHHHHHHHhcccCCCce
Confidence 79999999999999999999999999888888999999988 8899999999999999965 79999999999999999
Q ss_pred EEEEEecCCC
Q 038410 717 LLLQFSSVPD 726 (850)
Q Consensus 717 ~~~~~~~~~~ 726 (850)
++..++....
T Consensus 211 ~i~~e~i~~~ 220 (364)
T KOG1269|consen 211 FIVKEWIKTA 220 (364)
T ss_pred EEeHHHHHhh
Confidence 9998776543
No 223
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.98 E-value=7.2e-09 Score=115.42 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhc-cCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH-HHHhh
Q 038410 213 SQIDKVSEQLKS-WGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD-ALRIL 273 (850)
Q Consensus 213 ~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~-~~~ll 273 (850)
.+.+.|.+.+.+ .|++++.+++|++|+.++++++|++.+|+++.||.||.|.+.+. +.+.+
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHc
Confidence 677888888877 48999999999999998888999998898899999999999774 33444
No 224
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.98 E-value=5.4e-09 Score=119.97 Aligned_cols=57 Identities=9% Similarity=-0.144 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCC----cEEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNG----SQEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G----~~i~ad~VV~A~p~~~ 268 (850)
..++..+++.+.+.|++++.+++|++|..+++.+.|++.++ .++.|+.||.|++++.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 46777888888889999999999999999887788877665 2589999999999875
No 225
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.98 E-value=3.3e-09 Score=112.74 Aligned_cols=109 Identities=23% Similarity=0.315 Sum_probs=80.5
Q ss_pred CCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCCEEEEEcccCCC------CC
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAG---------LQDHIRLYLCDYRQM------PE 679 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~g---------l~~~v~~~~~D~~~~------~~ 679 (850)
++.+|||+|||-|+-..-..+..-..++|+|||.+.++.|++|.+... ..-...++.+|.... ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 789999999998887766666534699999999999999999993311 112467888886532 22
Q ss_pred -CCCccEEEEecchhhh--ChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 680 -VKKYDTIISCEMIENV--GHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 680 -~~~fD~v~s~~~~~~~--~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
..+||+|-+...+|+. .++....+++++.+.|||||+++.+++.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2599999999999986 5556778999999999999999997764
No 226
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.98 E-value=4.9e-09 Score=115.97 Aligned_cols=103 Identities=19% Similarity=0.302 Sum_probs=81.9
Q ss_pred CCeEEEEccCccHHHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEec
Q 038410 616 GLDVLEIGCGWGTLAIEIVKQT-----GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCE 690 (850)
Q Consensus 616 ~~~vLDiGcG~G~~~~~la~~~-----~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~ 690 (850)
+..|||||||+|-++..+++.. ..+|++|+-|+.++...+++++.+++.++|+++++|++++..+.+.|+|||-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 5689999999999988776651 26999999999999888888889999999999999999999556999999976
Q ss_pred chhhhChhhHHHHHHHHHhccccCeEEE
Q 038410 691 MIENVGHEYIEEFFGCCESLLAEHGLLL 718 (850)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~r~LkpgG~~~ 718 (850)
|=.....+-.++.+....|.|||||.++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 6433334567788999999999999876
No 227
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.97 E-value=1.2e-08 Score=113.59 Aligned_cols=36 Identities=42% Similarity=0.673 Sum_probs=33.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCC
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLG 36 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~G 36 (850)
+||+|||||+||++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976544
No 228
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.97 E-value=3.8e-09 Score=101.78 Aligned_cols=39 Identities=46% Similarity=0.702 Sum_probs=32.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (850)
||+|||||+|||+||++|+++|++|+|+|++..+||.++
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred CEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 899999999999999999999999999999999998533
No 229
>PRK07236 hypothetical protein; Provisional
Probab=98.97 E-value=7.5e-09 Score=115.22 Aligned_cols=54 Identities=7% Similarity=0.003 Sum_probs=44.2
Q ss_pred HHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHH
Q 038410 214 QIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 214 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~ 269 (850)
+.+.|.+.+. +.+|+++++|++|+.++++|+|++.+|++++||.||.|-+....
T Consensus 102 l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 102 LYRALRAAFP--AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred HHHHHHHhCC--CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 4445555553 46799999999999998889999999999999999999876643
No 230
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.97 E-value=7.3e-09 Score=118.73 Aligned_cols=57 Identities=12% Similarity=-0.040 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeC---Cc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVN---GS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G~--~i~ad~VV~A~p~~~ 268 (850)
..++..+++.+.++|++++.+++|++|..+++.+.|++.+ |+ ++.|+.||.|++++.
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 4677788888888899999999999999887777777654 53 689999999999975
No 231
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.97 E-value=5.4e-09 Score=102.88 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=84.0
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--CCCCccEEEEecc
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--EVKKYDTIISCEM 691 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--~~~~fD~v~s~~~ 691 (850)
.++.+|||+|||+|.+++.++.+...+|+++|++++.++.++++++..++. +++++++|+.+.. ..++||+|++...
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 467899999999999999765553579999999999999999999998875 7999999986532 3357999999988
Q ss_pred hhhhChhhHHHHHHHHHh--ccccCeEEEEEEec
Q 038410 692 IENVGHEYIEEFFGCCES--LLAEHGLLLLQFSS 723 (850)
Q Consensus 692 ~~~~~~~~~~~~~~~~~r--~LkpgG~~~~~~~~ 723 (850)
+.. + .....++.+.. +|+|++.++++...
T Consensus 131 y~~-g--~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 131 FRK-G--LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC-C--hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 542 2 24556666655 48999999986543
No 232
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.96 E-value=1.6e-08 Score=112.53 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeC------C--cEEeCCEEEEecChHH-HHHhh
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVN------G--SQEFYNGCVMAVHAPD-ALRIL 273 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~------G--~~i~ad~VV~A~p~~~-~~~ll 273 (850)
.+-+.|.+.+.+.|++++.+ .|++|..+++++.|++.+ | .+++||.||.|.+... +.+.+
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~l 161 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKEL 161 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHc
Confidence 45556777777779999755 699999888888877653 2 3689999999998754 33444
No 233
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.95 E-value=3.6e-09 Score=107.36 Aligned_cols=117 Identities=13% Similarity=0.125 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC
Q 038410 600 QMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM 677 (850)
Q Consensus 600 q~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~ 677 (850)
+-+.+..+++.. +..+|||||++.|.-++++|+. .+.+|+.+|.+++..+.|++.++++|+.++|+++.+|+.+.
T Consensus 67 ~g~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~ 143 (247)
T PLN02589 67 EGQFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
T ss_pred HHHHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH
Confidence 344455555543 4569999999999999999986 47899999999999999999999999999999999998664
Q ss_pred C----C----CCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecC
Q 038410 678 P----E----VKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSV 724 (850)
Q Consensus 678 ~----~----~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~ 724 (850)
- . .++||.|+.-.- .+++..+++.+.++|+|||.+++..+-.
T Consensus 144 L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred HHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 2 1 268999998643 3568899999999999999999865543
No 234
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.95 E-value=2.2e-08 Score=112.53 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhc-cCceEeeCCceEEEEec-CCceEEE---eeCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKS-WGIQIRMSCEVYSVFPA-DEGCSIV---CVNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~-~~~v~V~---~~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+.++|++.+.+ .|++|+++++|++|+.. +++|+|+ +.+|+ +++||+||+|++++.
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 4788889888854 48999999999999988 6678775 44452 589999999999886
No 235
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.95 E-value=2e-08 Score=114.69 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=47.5
Q ss_pred cCChHHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEee--CC--cEEeCCEEEEecChH
Q 038410 208 RRHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCV--NG--SQEFYNGCVMAVHAP 267 (850)
Q Consensus 208 ~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~--~G--~~i~ad~VV~A~p~~ 267 (850)
.++...++..|.+.+++.|++|+++++|++|..++++| .|++. +| ..+.|+.||+|++..
T Consensus 127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 34456788999999999999999999999999877765 45442 33 357899999999864
No 236
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.94 E-value=9.1e-09 Score=108.23 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=97.0
Q ss_pred CCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCEEEEEc-ccCCCC-----CCCCccEE
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEA-GLQDHIRLYLC-DYRQMP-----EVKKYDTI 686 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~-gl~~~v~~~~~-D~~~~~-----~~~~fD~v 686 (850)
++.++||||||+|.+...++.+ ++++++|+|+++.+++.|+++++.+ ++.++|++++. |..++. +.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 5689999999999888888766 7899999999999999999999999 79989998753 333221 35689999
Q ss_pred EEecchhhhChhhH---HHHHHH----------------HHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCC
Q 038410 687 ISCEMIENVGHEYI---EEFFGC----------------CESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGG 747 (850)
Q Consensus 687 ~s~~~~~~~~~~~~---~~~~~~----------------~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~ 747 (850)
+|+..++.-.++.. ..-.+. ...++.+||.+.+......+. ..+.....|....+ +
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS--~~~~~~~gwftsmv---~ 268 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES--KAFAKQVLWFTSLV---S 268 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH--HHHHhhCcEEEEEe---e
Confidence 99988765433211 111111 234456777765533322221 11112222322211 3
Q ss_pred CCCCHHHHHHHHhcCCceEEEEe
Q 038410 748 CLPSLNRITSAMTSSSRLCVEHL 770 (850)
Q Consensus 748 ~~~~~~~~~~~~~~~~gf~v~~~ 770 (850)
...++..+.+.+.+ .|..-..+
T Consensus 269 kk~~l~~l~~~L~~-~~~~~~~~ 290 (321)
T PRK11727 269 KKENLPPLYRALKK-VGAVEVKT 290 (321)
T ss_pred ccCCHHHHHHHHHH-cCCceEEE
Confidence 45678888887775 57743333
No 237
>PRK05868 hypothetical protein; Validated
Probab=98.94 E-value=5.5e-09 Score=115.33 Aligned_cols=57 Identities=2% Similarity=0.000 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~ 270 (850)
.|.+.|.+.+ ..|++++++++|++|+.++++++|++++|++++||.||-|-+.+...
T Consensus 106 ~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~v 162 (372)
T PRK05868 106 DLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNV 162 (372)
T ss_pred HHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchH
Confidence 3444454443 34889999999999998888899999999999999999999877543
No 238
>PRK06834 hypothetical protein; Provisional
Probab=98.94 E-value=7.3e-09 Score=118.00 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+-+.|.+.+++.|++|+.+++|++|+.+++++.|++.+|++++||.||.|.+.+.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 45566777777779999999999999999999999888888899999999998764
No 239
>PRK03612 spermidine synthase; Provisional
Probab=98.93 E-value=4.2e-09 Score=120.16 Aligned_cols=108 Identities=23% Similarity=0.221 Sum_probs=83.9
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHH--HHH---cCC-CCCEEEEEcccCCCC--CCCCcc
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYTETK--VKE---AGL-QDHIRLYLCDYRQMP--EVKKYD 684 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~--~~~---~gl-~~~v~~~~~D~~~~~--~~~~fD 684 (850)
+++++|||||||.|..+..++++++ .+|++||+++++++.++++ ..+ ..+ .++++++.+|.++.- .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999998754 7999999999999999983 222 122 248999999987743 347899
Q ss_pred EEEEecchhhhCh---hhHHHHHHHHHhccccCeEEEEEE
Q 038410 685 TIISCEMIENVGH---EYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 685 ~v~s~~~~~~~~~---~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
+|++.......+. -.-.++++.+++.|||||.++++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9999854433211 123568999999999999999865
No 240
>PRK06184 hypothetical protein; Provisional
Probab=98.93 E-value=7.4e-09 Score=119.29 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEe---eCCcEEeCCEEEEecChHHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVC---VNGSQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~~i~ad~VV~A~p~~~~ 269 (850)
.+-+.|.+.+.+.|++|+++++|++|+.+++++.|++ .++++++||.||.|.+.+..
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 3445677777777999999999999999988888776 56678999999999998754
No 241
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.93 E-value=3e-09 Score=119.40 Aligned_cols=56 Identities=23% Similarity=0.229 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+.+.|.+.+.+.|++|+.+++|++|+.+++++.|++.+|+++.||.||.|.+.+.
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence 67778888888889999999999999999889999998998899999999998764
No 242
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.92 E-value=1.9e-08 Score=112.96 Aligned_cols=33 Identities=52% Similarity=0.765 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKED 33 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (850)
.||+|||||+||++||+.|+++|++|+|+|++.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 489999999999999999999999999999964
No 243
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.92 E-value=1.6e-08 Score=112.97 Aligned_cols=55 Identities=9% Similarity=-0.076 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhccC-ceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWG-IQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+.+.|.+.+++.| ++++ ++.|++|+.+++++.|++.+|.++.||.||.|.+.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence 56777888887777 8888 9999999988888999998888899999999999764
No 244
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.91 E-value=4.2e-09 Score=105.66 Aligned_cols=217 Identities=16% Similarity=0.203 Sum_probs=133.5
Q ss_pred HHHHHhhhhccCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh
Q 038410 557 AQARRNISHHYDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ 636 (850)
Q Consensus 557 ~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~ 636 (850)
....+.|++||. ..-...+.. .+-|.-+| |... .+++..++=.+-.++++.+||+|||-|+-++-.-+.
T Consensus 70 ~~~~~~Va~HYN---~~~e~g~e~-Rq~S~Ii~------lRnf-NNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA 138 (389)
T KOG1975|consen 70 ESKSSEVAEHYN---ERTEVGREK-RQRSPIIF------LRNF-NNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA 138 (389)
T ss_pred cchhHHHHHHHH---HHHHHhHhh-hccCceee------hhhh-hHHHHHHHHHHHhccccccceeccCCcccHhHhhhh
Confidence 344677899998 333332222 12333332 1111 223333332333578999999999999998877765
Q ss_pred cCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CEEEEEcccCCC------C-CCCCccEEEEecchhhh--ChhhHHH
Q 038410 637 TGCKYTGITLSEEQLKYTETKVKEAGLQD-----HIRLYLCDYRQM------P-EVKKYDTIISCEMIENV--GHEYIEE 702 (850)
Q Consensus 637 ~~~~v~gid~s~~~~~~a~~~~~~~gl~~-----~v~~~~~D~~~~------~-~~~~fD~v~s~~~~~~~--~~~~~~~ 702 (850)
.=.+++|+||++..++.|++|.++..-.. .+.|+.+|.... + .+.+||+|-|.+++|.- ..+....
T Consensus 139 gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~ 218 (389)
T KOG1975|consen 139 GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARI 218 (389)
T ss_pred cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHH
Confidence 22489999999999999999988643222 378899985332 2 23459999999888763 4456788
Q ss_pred HHHHHHhccccCeEEEEEEecCC---------------CCc----CCCC----cCcccccccccc--------CCCCCCC
Q 038410 703 FFGCCESLLAEHGLLLLQFSSVP---------------DQC----YDGH----RLSPGFITEYVF--------PGGCLPS 751 (850)
Q Consensus 703 ~~~~~~r~LkpgG~~~~~~~~~~---------------~~~----~~~~----~~~~~~~~~~i~--------p~~~~~~ 751 (850)
+++++.+.|||||.++-+.+... +.. |..+ .....|-.+|.| |. ++..
T Consensus 219 ~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~LedaVdcPE-ylV~ 297 (389)
T KOG1975|consen 219 ALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVDCPE-YLVP 297 (389)
T ss_pred HHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcccccCCcc-eeee
Confidence 99999999999999998543210 000 1100 012333345544 21 1222
Q ss_pred HHHHHHHHhcCCceEEEEeeecCCcHHHHHHHHHH
Q 038410 752 LNRITSAMTSSSRLCVEHLENIGIHFYQTLRCWRT 786 (850)
Q Consensus 752 ~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~ 786 (850)
-..+ ..+.+..|++++.+..+-.-|...+..|..
T Consensus 298 F~~l-~~lae~y~LeLv~~k~F~df~~e~~~~~~~ 331 (389)
T KOG1975|consen 298 FPTL-VSLAEEYGLELVFVKPFADFYEEELKKNEE 331 (389)
T ss_pred hHHH-HHHHHhcCcEEEEeccHHHHHHHhccccch
Confidence 2334 344445899999998876666666666633
No 245
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.91 E-value=8.2e-09 Score=116.09 Aligned_cols=56 Identities=13% Similarity=0.066 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~ 270 (850)
.|.+.|.+.+. +..++++++|++|+.++++|.|++++|++++||.||.|.+.+...
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 161 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSAL 161 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHH
Confidence 57777877775 356899999999999888999999999999999999999988643
No 246
>PRK01581 speE spermidine synthase; Validated
Probab=98.90 E-value=6.3e-09 Score=109.47 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=81.8
Q ss_pred CCCCeEEEEccCccHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHH--H---HHcCC-CCCEEEEEcccCCCC--CCCCcc
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYTETK--V---KEAGL-QDHIRLYLCDYRQMP--EVKKYD 684 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~--~---~~~gl-~~~v~~~~~D~~~~~--~~~~fD 684 (850)
....+||+||||.|..+..+.+.+ ..+|++||+++++++.|++. . .+..+ .++++++.+|..+.- ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 345699999999999999999873 47999999999999999962 1 11122 358999999988743 456899
Q ss_pred EEEEecchh---hhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 685 TIISCEMIE---NVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 685 ~v~s~~~~~---~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
+|++...-. ....-.-..+++.+++.|+|||.++++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999874211 1111223679999999999999999874
No 247
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.89 E-value=1.2e-07 Score=102.84 Aligned_cols=232 Identities=16% Similarity=0.164 Sum_probs=123.4
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCeEEEEecCCCCCCcceEEee--CCeeeecceeeccCCCchHHHHHHHHcCCC
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKA----GVEVVLYEKEDSLGGHAKTVTI--DGVDLDIGFMLFNHVEYPNMMEFLESLGVD 74 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~----G~~V~VlEa~~~~GG~~~s~~~--~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~ 74 (850)
|++=|||+|||+|+||.+|-+. |.+|++||+.+..||-+.+... .||.+-.|... ...+..+++|++..--.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~--~~~~eclwdLls~IPSl 80 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMM--EFHYECLWDLLSSIPSL 80 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccc--cchhHHHHHHHHhCCCC
Confidence 4678999999999999999987 4599999999999997665543 57777666544 24677777887765311
Q ss_pred ccc----------------ccceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcC
Q 038410 75 MGT----------------SDMSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELEN 138 (850)
Q Consensus 75 ~~~----------------~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (850)
..+ ......+...+|+.+......++ .... ..++.++.. .
T Consensus 81 e~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~~~~~~L----------s~k~----r~eL~kL~l----------~ 136 (500)
T PF06100_consen 81 EDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDTDSKFGL----------SEKD----RMELIKLLL----------T 136 (500)
T ss_pred CCCCCcHHHHHHHhccCCCCCcceeeeccCCccccccCcCCC----------CHHH----HHHHHHHhc----------C
Confidence 111 00001111111221111000111 0111 112222111 1
Q ss_pred CCCCCCCCcHHHHHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH-HhhhcCCC----cE-EEecCChH
Q 038410 139 SPDIDRNETLGHFIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR-LFQLFGHP----QC-VTVRRHSH 212 (850)
Q Consensus 139 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~----~~-~~~~gG~~ 212 (850)
......+.++.+|+...-+...|.. +...+++-.+- .|+.-+-.|+. .+..+.+- .+ .+.-.=.+
T Consensus 137 ~E~~L~~~~I~d~F~~~FF~SnFW~-----~W~T~FAFqpW----hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQye 207 (500)
T PF06100_consen 137 PEEDLGDKRIEDWFSESFFESNFWY-----MWSTMFAFQPW----HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYE 207 (500)
T ss_pred CHHHhCcccHHHhcchhhhcCchhH-----hHHHhhccCcc----hhHHHHHHHHHHHHHhcCCCCCccccccCccccHH
Confidence 1111145667777665433333322 12222222211 14444444443 22222221 11 11122347
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecC--Cc--e-EEEe-eCCc--EE---eCCEEEEecChH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPAD--EG--C-SIVC-VNGS--QE---FYNGCVMAVHAP 267 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~--~~--v-~V~~-~~G~--~i---~ad~VV~A~p~~ 267 (850)
+++..|.+.|+++|+++++|++|+.|+.+. +. + .+++ .+|. .| .-|.|+++.+.-
T Consensus 208 Sii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 208 SIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 899999999999999999999999998752 22 1 2222 4553 22 257888887643
No 248
>PRK08013 oxidoreductase; Provisional
Probab=98.89 E-value=1.8e-08 Score=112.69 Aligned_cols=58 Identities=16% Similarity=-0.025 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhcc-CceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHH
Q 038410 213 SQIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 213 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~ 270 (850)
.+-+.|.+.+.+. |++++.+++|++|+.+++++.|++.+|++++||.||-|-+.+...
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHH
Confidence 4666677777664 789999999999999888899999999999999999999977543
No 249
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.89 E-value=6e-09 Score=104.03 Aligned_cols=103 Identities=25% Similarity=0.276 Sum_probs=90.6
Q ss_pred CeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC----CCCCccEEEEecc
Q 038410 617 LDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP----EVKKYDTIISCEM 691 (850)
Q Consensus 617 ~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~----~~~~fD~v~s~~~ 691 (850)
-.+||||||.|.+...+|++ |...++|||+....+..|.+++.+.++. |+.+++.|+.++- ++++.|.|..++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999999999 8999999999999999999999999997 8999999987653 5569999999987
Q ss_pred hhhhChhh------HHHHHHHHHhccccCeEEEEE
Q 038410 692 IENVGHEY------IEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 692 ~~~~~~~~------~~~~~~~~~r~LkpgG~~~~~ 720 (850)
=.|...+. .+.+++.+.++|||||.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 66553332 478999999999999999984
No 250
>PLN02672 methionine S-methyltransferase
Probab=98.89 E-value=1.4e-08 Score=121.85 Aligned_cols=106 Identities=23% Similarity=0.355 Sum_probs=84.1
Q ss_pred CCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCCEEEEEcccCCCCC
Q 038410 616 GLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGL---------------QDHIRLYLCDYRQMPE 679 (850)
Q Consensus 616 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl---------------~~~v~~~~~D~~~~~~ 679 (850)
+.+|||+|||+|.+++.++++ +..+|+|+|+|+++++.|+++++.+++ .++|+++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 568999999999999999988 568999999999999999999987654 2579999999876542
Q ss_pred --CCCccEEEEecch--------------hhh----------------------ChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 680 --VKKYDTIISCEMI--------------ENV----------------------GHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 680 --~~~fD~v~s~~~~--------------~~~----------------------~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
..+||+|||+-.. +|- |-.-+..++.+..++|||||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2379999999431 110 11234678888999999999998843
No 251
>PRK07045 putative monooxygenase; Reviewed
Probab=98.89 E-value=1.7e-08 Score=112.56 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhc-cCceEeeCCceEEEEecCCc--eEEEeeCCcEEeCCEEEEecChHHHH
Q 038410 213 SQIDKVSEQLKS-WGIQIRMSCEVYSVFPADEG--CSIVCVNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 213 ~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~i~ad~VV~A~p~~~~~ 270 (850)
.+.+.|.+.+.+ .|++++++++|++|+.++++ +.|++.+|+++.+|.||.|.+.....
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~v 167 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMI 167 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHH
Confidence 455566666643 47899999999999987666 46888899999999999999877543
No 252
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.88 E-value=8.5e-09 Score=108.11 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCC
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEV 680 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~ 680 (850)
...++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+|+.+++.+++++...+..++++++++|+.+.+.
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~- 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF- 99 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-
Confidence 355678899999999999999999999999999987 789999999999999999999877766789999999987653
Q ss_pred CCccEEEEecchhh
Q 038410 681 KKYDTIISCEMIEN 694 (850)
Q Consensus 681 ~~fD~v~s~~~~~~ 694 (850)
..||.|+++-.+.-
T Consensus 100 ~~~d~VvaNlPY~I 113 (294)
T PTZ00338 100 PYFDVCVANVPYQI 113 (294)
T ss_pred cccCEEEecCCccc
Confidence 36999998765543
No 253
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.88 E-value=2.3e-08 Score=97.43 Aligned_cols=115 Identities=23% Similarity=0.344 Sum_probs=88.3
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCE---------EEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcc
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCK---------YTGITLSEEQLKYTETKVKEAGLQDHIRLYLCD 673 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~---------v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D 673 (850)
...|+...+.++++.|||--||+|++.+.++.. .++. +.|+|+++++++.|+++++.+|+.+.+.+.+.|
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 346777778899999999999999999998877 4445 889999999999999999999999999999999
Q ss_pred cCCCC-CCCCccEEEEecchhh-hC-----hhhHHHHHHHHHhccccCeEEE
Q 038410 674 YRQMP-EVKKYDTIISCEMIEN-VG-----HEYIEEFFGCCESLLAEHGLLL 718 (850)
Q Consensus 674 ~~~~~-~~~~fD~v~s~~~~~~-~~-----~~~~~~~~~~~~r~LkpgG~~~ 718 (850)
+.+++ .++++|.|+++..+.- ++ .+-+..+++++.++|++...++
T Consensus 97 ~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 97 ARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred hhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 99999 7789999999975542 22 2346778999999999933333
No 254
>PRK07190 hypothetical protein; Provisional
Probab=98.88 E-value=3.3e-08 Score=112.54 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=48.2
Q ss_pred HHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHH
Q 038410 214 QIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 214 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~ 270 (850)
+-+.|.+.+.+.|++|+.+++|++|+.+++++.|++.+|++++|+.||.|.+.....
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~v 167 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFV 167 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHH
Confidence 444566677777999999999999999998988888888889999999999987543
No 255
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.88 E-value=1.3e-08 Score=114.62 Aligned_cols=57 Identities=21% Similarity=0.113 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhcc-CceEeeCCceEEEEecCCceEEEeeC-C--cEEeCCEEEEecChHHH
Q 038410 213 SQIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGCSIVCVN-G--SQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 213 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~-G--~~i~ad~VV~A~p~~~~ 269 (850)
.+.+.|.+.+.+. |++++++++|++|+.+++++.|++.+ + .+++||.||.|.+....
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 4666777777664 68999999999999988888887763 2 36899999999987643
No 256
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.87 E-value=2.8e-08 Score=110.54 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcc-CceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHH
Q 038410 214 QIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 214 l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~ 270 (850)
+-..|.+.+.+. |++|+.+++|++++.+++++.|++++|++++||.||.|.+.....
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchh
Confidence 444555555443 689999999999999999999999999999999999999987543
No 257
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.87 E-value=9.5e-09 Score=105.86 Aligned_cols=106 Identities=25% Similarity=0.325 Sum_probs=88.5
Q ss_pred CCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEec
Q 038410 612 RVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCE 690 (850)
Q Consensus 612 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~ 690 (850)
.+-.+..|||+|||+|.++...|+..-.+|++||-|. +++.|++.+..+++.+.|+++++.++++. |.++.|+|+|-+
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 3567889999999999999999998335899999876 45999999999999999999999999987 668999999988
Q ss_pred chhhhCh-hhHHHHHHHHHhccccCeEEE
Q 038410 691 MIENVGH-EYIEEFFGCCESLLAEHGLLL 718 (850)
Q Consensus 691 ~~~~~~~-~~~~~~~~~~~r~LkpgG~~~ 718 (850)
|=..+=. .-+..++-.=.+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 7555421 225566666778999999876
No 258
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.86 E-value=3e-08 Score=110.78 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhcc-CceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHH
Q 038410 213 SQIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 213 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~ 269 (850)
.+-+.|.+.+.+. |++++.+++|++++.+++++.|++.+|++++||.||.|.+.+..
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 4556677777665 89999999999999888889999888988999999999987753
No 259
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.86 E-value=3.2e-08 Score=95.90 Aligned_cols=109 Identities=22% Similarity=0.368 Sum_probs=78.6
Q ss_pred CCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCEEEEEcccCCCC-----CCCCc
Q 038410 612 RVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAG--LQDHIRLYLCDYRQMP-----EVKKY 683 (850)
Q Consensus 612 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~g--l~~~v~~~~~D~~~~~-----~~~~f 683 (850)
...++.+|||+|||+|-.++.+++. ..++|+..|.++ .++..+.+++.++ ...++++...|..+-. ...+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3567889999999999999999998 678999999999 9999999999876 5668999999876521 34689
Q ss_pred cEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 684 DTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 684 D~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
|+|+...+++.- +..+.+++.+.++|+|+|.+++....
T Consensus 121 D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 121 DVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999999999975 67899999999999999997775543
No 260
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.86 E-value=2.1e-08 Score=109.89 Aligned_cols=131 Identities=12% Similarity=0.195 Sum_probs=96.7
Q ss_pred CcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Q 038410 581 SMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKE 660 (850)
Q Consensus 581 ~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~ 660 (850)
.+.++..-|-+.+.... ...++.+.+.+...++.+|||+|||+|.+++.++.. +.+|+|||+|+++++.|+++++.
T Consensus 202 ~~~~~~~~F~Q~n~~~~---~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~ 277 (374)
T TIGR02085 202 PLVIRPQSFFQTNPKVA---AQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQM 277 (374)
T ss_pred EEEECCCccccCCHHHH---HHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHH
Confidence 45566555544333222 334444555554456679999999999999999986 78999999999999999999999
Q ss_pred cCCCCCEEEEEcccCCCC--CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 661 AGLQDHIRLYLCDYRQMP--EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 661 ~gl~~~v~~~~~D~~~~~--~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
+++. +++++++|+.+.. ..++||+|+....-.... ..+++.+.+ ++|++.++++.
T Consensus 278 ~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~----~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 278 LGLD-NLSFAALDSAKFATAQMSAPELVLVNPPRRGIG----KELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred cCCC-cEEEEECCHHHHHHhcCCCCCEEEECCCCCCCc----HHHHHHHHh-cCCCeEEEEEe
Confidence 9985 8999999987643 225699999997765442 445555543 79999888853
No 261
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.85 E-value=1.5e-08 Score=101.66 Aligned_cols=177 Identities=21% Similarity=0.182 Sum_probs=117.2
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchh
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIE 693 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~ 693 (850)
-.+..|||+|||.|.++..+|+....+|++|+.| +|.++|++.++.+.+.++|.++.+-++++..+++.|+|+|-.|-.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~ 254 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGY 254 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchh
Confidence 4577899999999999999999844589999986 599999999999999999999999999998557999999987654
Q ss_pred hh-ChhhHHHHHHHHHhccccCeEEEEE--EecCCC----CcCCCCcCccccccccccCCCCCCCHHHHHHHHhcCCce-
Q 038410 694 NV-GHEYIEEFFGCCESLLAEHGLLLLQ--FSSVPD----QCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSSSRL- 765 (850)
Q Consensus 694 ~~-~~~~~~~~~~~~~r~LkpgG~~~~~--~~~~~~----~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf- 765 (850)
.+ .++-++.|+. .++.|||.|.++=. ++.... ..|.+......|+.+--|-|-.+.++.. ....+ -|
T Consensus 255 mL~NERMLEsYl~-Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g--~a~~e--YFr 329 (517)
T KOG1500|consen 255 MLVNERMLESYLH-ARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYG--SAHQE--YFR 329 (517)
T ss_pred hhhhHHHHHHHHH-HHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhh--hhhhh--hhc
Confidence 44 3344455544 45999999998742 221111 1111111122333332333333322211 11111 23
Q ss_pred -EEEEeeecCCcHHHHHHHHHHHHHhcHHHHH
Q 038410 766 -CVEHLENIGIHFYQTLRCWRTNLMEKQSEIL 796 (850)
Q Consensus 766 -~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~ 796 (850)
-|++..+.+.-.++++.+-.+-++...+++.
T Consensus 330 QPvVDtFD~RilmA~sv~h~~dF~~~kEedlh 361 (517)
T KOG1500|consen 330 QPVVDTFDIRILMAKSVFHVIDFLNMKEEDLH 361 (517)
T ss_pred cccccccccceeeccchHhhhhhhhcccchhe
Confidence 3677777777777887776666665555544
No 262
>PRK09126 hypothetical protein; Provisional
Probab=98.85 E-value=1.5e-08 Score=113.29 Aligned_cols=55 Identities=20% Similarity=0.136 Sum_probs=44.7
Q ss_pred HHHHHHHHhh-ccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 214 QIDKVSEQLK-SWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 214 l~~~L~~~l~-~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
+.+.|.+.+. ..|++|+.+++|++++.+++++.|++++|++++||.||.|.+...
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence 3344544443 358999999999999998888899988998999999999998763
No 263
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.85 E-value=2.5e-08 Score=98.97 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=94.7
Q ss_pred CCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCccEEEEecchh
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEMIE 693 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~~ 693 (850)
...++||||.|-|..+..++.. -.+|++.|+|+.|....+++ | .+++ |..++. .+.+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g----~~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G----FTVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C----CeEE--ehhhhhccCCceEEEeehhhhh
Confidence 4568999999999999999986 56899999999996655543 4 3433 333344 346899999999999
Q ss_pred hhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcC-cccccccccc-CCCC-CCCHHHHHHHHhcCCceEEEEe
Q 038410 694 NVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRL-SPGFITEYVF-PGGC-LPSLNRITSAMTSSSRLCVEHL 770 (850)
Q Consensus 694 ~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~-p~~~-~~~~~~~~~~~~~~~gf~v~~~ 770 (850)
.. ..+...++.|++.|+|+|++++.. +.|-..|-+... ...--.+.+- +|.. --.++.+.+.+. .+||+++.+
T Consensus 163 Rc--~~P~~LL~~i~~~l~p~G~lilAv-VlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~-p~GF~v~~~ 238 (265)
T PF05219_consen 163 RC--DRPLTLLRDIRRALKPNGRLILAV-VLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFE-PAGFEVERW 238 (265)
T ss_pred cc--CCHHHHHHHHHHHhCCCCEEEEEE-EecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHH-hcCCEEEEE
Confidence 88 558999999999999999998844 334333332211 0000011111 1100 012333444444 479999888
Q ss_pred eec
Q 038410 771 ENI 773 (850)
Q Consensus 771 ~~~ 773 (850)
...
T Consensus 239 tr~ 241 (265)
T PF05219_consen 239 TRL 241 (265)
T ss_pred ecc
Confidence 664
No 264
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.4e-08 Score=93.65 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=69.5
Q ss_pred HcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEe
Q 038410 610 KARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISC 689 (850)
Q Consensus 610 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~ 689 (850)
..+.-.|.+|+|+|||+|.+++.++-..-.+|+|+|+++++++.+++++.+ +.++|+|+.+|+.+.. +.||.|+.+
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEEC
Confidence 344456889999999999999998886336999999999999999999988 4568999999999987 789999999
Q ss_pred cchhh
Q 038410 690 EMIEN 694 (850)
Q Consensus 690 ~~~~~ 694 (850)
..|..
T Consensus 116 PPFG~ 120 (198)
T COG2263 116 PPFGS 120 (198)
T ss_pred CCCcc
Confidence 77643
No 265
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.84 E-value=1.4e-07 Score=94.67 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=110.3
Q ss_pred CCCeEEEEccCccHHHHHHHHh-cC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC----CCCCccEEE
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQ-TG--CKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP----EVKKYDTII 687 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~-~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~----~~~~fD~v~ 687 (850)
..-+||||.||.|.....+.+. +. .+|.-.|.|+.-++..++.+++.|+++-++|.++|+.+.. .+...|+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4569999999999999888777 44 6899999999999999999999999987899999987753 235689999
Q ss_pred EecchhhhChhh-HHHHHHHHHhccccCeEEEEEEecCCCCc-C-----CCCcCccccccccccCCCCCCCHHHHHHHHh
Q 038410 688 SCEMIENVGHEY-IEEFFGCCESLLAEHGLLLLQFSSVPDQC-Y-----DGHRLSPGFITEYVFPGGCLPSLNRITSAMT 760 (850)
Q Consensus 688 s~~~~~~~~~~~-~~~~~~~~~r~LkpgG~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~ 760 (850)
.++.+|.+++.. ....++.+.+++.|||+++.+........ . ...+...+|+.+. -|..++-+.++
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr-------Rsq~EmD~Lv~ 287 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR-------RSQAEMDQLVE 287 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe-------cCHHHHHHHHH
Confidence 999999999865 55579999999999999998442211111 0 0111223565443 46777755555
Q ss_pred cCCceEEE
Q 038410 761 SSSRLCVE 768 (850)
Q Consensus 761 ~~~gf~v~ 768 (850)
.+||+-.
T Consensus 288 -~aGF~K~ 294 (311)
T PF12147_consen 288 -AAGFEKI 294 (311)
T ss_pred -HcCCchh
Confidence 5799743
No 266
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.84 E-value=5.5e-08 Score=110.29 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecC-Cce---EEEeeCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPAD-EGC---SIVCVNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v---~V~~~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+.+.|.+.+++.|++|+++++|++|..++ +++ .+...+++ .+.++.||+|++...
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 4688899999999999999999999999864 443 33334453 467999999998764
No 267
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.83 E-value=4.5e-08 Score=109.54 Aligned_cols=58 Identities=10% Similarity=0.014 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhcc-CceEeeCCceEEEEecCCceEEEe---eCCcEEeCCEEEEecChHHHH
Q 038410 213 SQIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGCSIVC---VNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 213 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~---~~G~~i~ad~VV~A~p~~~~~ 270 (850)
.+.+.|.+.+.+. |++++++++|++++.+++++.|++ .++++++||.||-|-+.+...
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhH
Confidence 5666677777553 789999999999999888887776 334578999999999987644
No 268
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.83 E-value=3.1e-08 Score=110.58 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+.+.|.+.+.+.++..+.+++|++++.+++++.|++++|++++||.||.|.+...
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence 56677777777766545889999999999999999998998899999999998764
No 269
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.83 E-value=1.5e-08 Score=99.26 Aligned_cols=100 Identities=23% Similarity=0.370 Sum_probs=76.6
Q ss_pred CCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecc
Q 038410 613 VNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEM 691 (850)
Q Consensus 613 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~ 691 (850)
.++|+.|||..||.|.+++.+|+. .+++|+++|++|..+++.+++++.+++.+++.++++|.+++.+.+.||.|++...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 578999999999999999999994 4789999999999999999999999999999999999999876789999999753
Q ss_pred hhhhChhhHHHHHHHHHhccccCeEEE
Q 038410 692 IENVGHEYIEEFFGCCESLLAEHGLLL 718 (850)
Q Consensus 692 ~~~~~~~~~~~~~~~~~r~LkpgG~~~ 718 (850)
-.. ..++..+.+++|+||.+-
T Consensus 179 ~~~------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ESS------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SSG------GGGHHHHHHHEEEEEEEE
T ss_pred HHH------HHHHHHHHHHhcCCcEEE
Confidence 222 357788999999998764
No 270
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.82 E-value=2.4e-08 Score=112.33 Aligned_cols=112 Identities=15% Similarity=0.235 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC-C-
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM-P- 678 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~-~- 678 (850)
...++.+.+.+.++++.+|||+|||+|.+++.+|+. ..+|+|+|+|+++++.|+++++.+++. +++++++|+.+. +
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHH
Confidence 445667777777888899999999999999999987 679999999999999999999998885 899999998653 1
Q ss_pred ---CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEE
Q 038410 679 ---EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLL 719 (850)
Q Consensus 679 ---~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~ 719 (850)
..++||+|+....=.-+ ...+++.+.+ |+|++.+++
T Consensus 356 ~~~~~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HHhcCCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence 23579999976542211 2456666554 789887777
No 271
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.82 E-value=4.8e-08 Score=109.51 Aligned_cols=55 Identities=16% Similarity=0.036 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcc-CceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 214 QIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 214 l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
+.+.|.+.+.+. |++|+.+++|++|+.+++++.|++.+|++++||.||.|.+...
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 445566666553 6899999999999998888999999999999999999999764
No 272
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.82 E-value=4.6e-08 Score=96.83 Aligned_cols=48 Identities=23% Similarity=0.601 Sum_probs=40.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCC------CeEEEEecCCCCCCcceEEeeCCeeee
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAG------VEVVLYEKEDSLGGHAKTVTIDGVDLD 50 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G------~~V~VlEa~~~~GG~~~s~~~~G~~~d 50 (850)
|+|+||||||.|.++||+|++.+ +.||++|++...|| .|....|+.-+
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g--aSGkasgfLa~ 64 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG--ASGKASGFLAK 64 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc--cccccchhhHh
Confidence 68999999999999999999997 79999999888888 45555665443
No 273
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.82 E-value=2e-08 Score=104.37 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCC
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEV 680 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~ 680 (850)
.+..+.+++.+++.++++|||||||+|.++..++++ +.+|+++|+++.+++.+++++.. .++++++++|+.+++.
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~- 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDL- 89 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCc-
Confidence 455678888889999999999999999999999998 78999999999999999988754 2489999999988763
Q ss_pred CCccEEEEecchh
Q 038410 681 KKYDTIISCEMIE 693 (850)
Q Consensus 681 ~~fD~v~s~~~~~ 693 (850)
..||.|+++-.+.
T Consensus 90 ~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 PEFNKVVSNLPYQ 102 (258)
T ss_pred hhceEEEEcCCcc
Confidence 2589999987754
No 274
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.81 E-value=5e-08 Score=113.29 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcc-CceEeeCCceEEEEecCCceEEEee--CC--cEEeCCEEEEecChHHHH-Hhh
Q 038410 214 QIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGCSIVCV--NG--SQEFYNGCVMAVHAPDAL-RIL 273 (850)
Q Consensus 214 l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~i~ad~VV~A~p~~~~~-~ll 273 (850)
+-+.|.+.+.+. |++|+.+++|++|+.++++|+|++. +| ++++||.||-|.+..... +.+
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l 180 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTL 180 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence 344455655553 8999999999999999999888776 56 478999999999987544 344
No 275
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.81 E-value=6.8e-08 Score=106.96 Aligned_cols=57 Identities=11% Similarity=-0.021 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhccC-ceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHH
Q 038410 213 SQIDKVSEQLKSWG-IQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 213 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~ 270 (850)
.+-+.|.+++.+.+ ++++.+++|++|..+++++.|++.++ +++||.||-|-+.+...
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~v 162 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchh
Confidence 67777888777765 78999999999999988999988777 79999999999877543
No 276
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.81 E-value=4e-08 Score=94.02 Aligned_cols=128 Identities=18% Similarity=0.296 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCCC-CCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CC
Q 038410 603 KVSLLIEKARVNK-GLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EV 680 (850)
Q Consensus 603 ~~~~~~~~l~~~~-~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~ 680 (850)
-++.+++.+.-.| +..|-|+|||.+.++..+.+ +.+|...|+-.. +-.+..+|+.++| ++
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~----------------n~~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP----------------NPRVTACDIANVPLED 120 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S----------------STTEEES-TTS-S--T
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccCC----------------CCCEEEecCccCcCCC
Confidence 3577888776544 56899999999999965442 568999999542 2246789999999 88
Q ss_pred CCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHh
Q 038410 681 KKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMT 760 (850)
Q Consensus 681 ~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~ 760 (850)
++.|++|.+.++.- .|+..+++|..|+|||||.+.|.++... +.+.....+.+.
T Consensus 121 ~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR-----------------------f~~~~~F~~~~~ 174 (219)
T PF05148_consen 121 ESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR-----------------------FENVKQFIKALK 174 (219)
T ss_dssp T-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG------------------------S-HHHHHHHHH
T ss_pred CceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc-----------------------CcCHHHHHHHHH
Confidence 99999999877654 3799999999999999999999887521 124666777777
Q ss_pred cCCceEEEEeeecCC
Q 038410 761 SSSRLCVEHLENIGI 775 (850)
Q Consensus 761 ~~~gf~v~~~~~~~~ 775 (850)
. .||.+...+....
T Consensus 175 ~-~GF~~~~~d~~n~ 188 (219)
T PF05148_consen 175 K-LGFKLKSKDESNK 188 (219)
T ss_dssp C-TTEEEEEEE--ST
T ss_pred H-CCCeEEecccCCC
Confidence 5 7999988655433
No 277
>PRK09897 hypothetical protein; Provisional
Probab=98.81 E-value=4e-08 Score=111.49 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhccC--ceEeeCCceEEEEecCCceEEEeeC-CcEEeCCEEEEecCh
Q 038410 213 SQIDKVSEQLKSWG--IQIRMSCEVYSVFPADEGCSIVCVN-GSQEFYNGCVMAVHA 266 (850)
Q Consensus 213 ~l~~~L~~~l~~~G--~~i~~~~~V~~I~~~~~~v~V~~~~-G~~i~ad~VV~A~p~ 266 (850)
...+.+.+.+++.| ++++.+++|++|+..++++.|++.+ |..+.||+||+|++.
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 34445666666666 6888999999999998899998865 467899999999985
No 278
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.81 E-value=6.4e-08 Score=111.07 Aligned_cols=57 Identities=9% Similarity=0.063 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce---EEEeeCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC---SIVCVNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v---~V~~~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+++.|.+.+++.|++|+++++|++|..++++| .+...+|+ ++.|+.||+|++...
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 3588889999999999999999999998877654 33334432 588999999998653
No 279
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.80 E-value=1.8e-08 Score=105.45 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCC
Q 038410 602 RKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVK 681 (850)
Q Consensus 602 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~ 681 (850)
...+.+++.+.+.++++|||||||+|.++..++++ +.+|+|+|+|+++++.+++++.. ++++++++|+.+++.+.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH
Confidence 34567888888899999999999999999999998 66999999999999999987642 48999999999887322
Q ss_pred -CccEEEEecchh
Q 038410 682 -KYDTIISCEMIE 693 (850)
Q Consensus 682 -~fD~v~s~~~~~ 693 (850)
.+|.|+++-.+.
T Consensus 104 ~~~~~vv~NlPY~ 116 (272)
T PRK00274 104 LQPLKVVANLPYN 116 (272)
T ss_pred cCcceEEEeCCcc
Confidence 258999986643
No 280
>PLN02463 lycopene beta cyclase
Probab=98.80 E-value=5.2e-08 Score=108.92 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+.+.|.+.+.+.|++++ +++|++|+..++++.|++.+|.+++||.||.|++...
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 455667777777789985 6799999999888999999998899999999998753
No 281
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.80 E-value=4.7e-08 Score=108.38 Aligned_cols=57 Identities=11% Similarity=-0.051 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCc-----EEeCCEEEEecChHHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGS-----QEFYNGCVMAVHAPDA 269 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~-----~i~ad~VV~A~p~~~~ 269 (850)
+|+-..+..+.++|++|...++|+++.++++-+.|...|.. +++|+.||.|+++|.-
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 67788888888899999999999999999885567665432 5889999999999863
No 282
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.79 E-value=1.4e-08 Score=114.44 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEee---CCc--EEeCCEEEEecChHHH
Q 038410 210 HSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCV---NGS--QEFYNGCVMAVHAPDA 269 (850)
Q Consensus 210 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G~--~i~ad~VV~A~p~~~~ 269 (850)
+...++..|.+.++++|++|+++++|+++..++++| .|... +|+ .+.|+.||+|++....
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 346789999999999999999999999999988885 34444 554 5779999999987654
No 283
>PRK08244 hypothetical protein; Provisional
Probab=98.79 E-value=2.2e-08 Score=115.17 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEee--CC-cEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCV--NG-SQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~--~G-~~i~ad~VV~A~p~~~ 268 (850)
.+-+.|.+.+++.|++|+.+++|++|+.++++++|+.. +| ++++||.||.|.+...
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 34455666666779999999999999998888876654 45 4799999999998764
No 284
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.79 E-value=3e-08 Score=110.66 Aligned_cols=57 Identities=7% Similarity=-0.062 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEe-cCCceEEEe-eCCc--EEeCCEEEEecChHHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFP-ADEGCSIVC-VNGS--QEFYNGCVMAVHAPDA 269 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~-~~~~v~V~~-~~G~--~i~ad~VV~A~p~~~~ 269 (850)
.+.+.|.+.+.+.|++++++++|++|+. +++++.|+. .+|+ +++||.||-|-+.+..
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 3455566666667999999999999987 566677776 4664 6899999999987753
No 285
>PRK07538 hypothetical protein; Provisional
Probab=98.79 E-value=3.8e-08 Score=110.66 Aligned_cols=59 Identities=34% Similarity=0.527 Sum_probs=45.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDM 75 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~ 75 (850)
|||+|||||++||++|+.|+++|++|+|+|++..+.- . |... .-.++..+.++++|+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-------~------g~gi---~l~p~~~~~L~~lgl~~ 59 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRP-------L------GVGI---NLLPHAVRELAELGLLD 59 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccc-------c------Ccce---eeCchHHHHHHHCCCHH
Confidence 7999999999999999999999999999999765421 0 1111 12456778888888754
No 286
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.78 E-value=6.6e-08 Score=92.28 Aligned_cols=53 Identities=25% Similarity=0.425 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhccCceEe-eCCceEEEEecCCceEEEeeCCcEEeCCEEEEecCh
Q 038410 213 SQIDKVSEQLKSWGIQIR-MSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHA 266 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~-~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~ 266 (850)
...+.+.+.+ ..|++|. ...+|+.|+..++++.|.+++|..+.||+||+|++.
T Consensus 102 ~~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 102 DRFDRLLARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHHHHhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 3444455555 3355443 577999999999999999999999999999999974
No 287
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.78 E-value=3.3e-08 Score=95.45 Aligned_cols=105 Identities=22% Similarity=0.413 Sum_probs=78.6
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcC------------------------------
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYTETKVKEAG------------------------------ 662 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~g------------------------------ 662 (850)
-.+..+|||||..|.++..+|+..++ .|.|+||++..++.|++.++.--
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45678999999999999999999666 69999999999999998765310
Q ss_pred ----CCCCEEEE-------EcccCCCCCCCCccEEEEecc--hhhh--ChhhHHHHHHHHHhccccCeEEEE
Q 038410 663 ----LQDHIRLY-------LCDYRQMPEVKKYDTIISCEM--IENV--GHEYIEEFFGCCESLLAEHGLLLL 719 (850)
Q Consensus 663 ----l~~~v~~~-------~~D~~~~~~~~~fD~v~s~~~--~~~~--~~~~~~~~~~~~~r~LkpgG~~~~ 719 (850)
+++++.|. ..|+.++ ....||+|+|... .-|+ |++-+..+|+++.++|.|||++++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 11122222 2222222 2357999987654 3343 677899999999999999999998
No 288
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.78 E-value=4.5e-08 Score=101.63 Aligned_cols=115 Identities=22% Similarity=0.324 Sum_probs=95.3
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEc-ccCCCC-CCCC
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLC-DYRQMP-EVKK 682 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~-D~~~~~-~~~~ 682 (850)
+.+.+...+++|+.|||==||||++++.+.-. |++++|+|++..|++-|+.+++..+++ ...+... |+.+++ ++.+
T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCCCCCc
Confidence 46677778899999999999999999998876 999999999999999999999998876 4555555 999999 5567
Q ss_pred ccEEEEecchhh------hC-hhhHHHHHHHHHhccccCeEEEEEE
Q 038410 683 YDTIISCEMIEN------VG-HEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 683 fD~v~s~~~~~~------~~-~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
||.|++-....- .+ ++-+..+|+.++++||+||++++..
T Consensus 265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 999998743211 11 2447899999999999999999844
No 289
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.78 E-value=2.9e-08 Score=96.52 Aligned_cols=124 Identities=21% Similarity=0.376 Sum_probs=94.4
Q ss_pred HHHHHHHcCCCCC-CeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCC
Q 038410 604 VSLLIEKARVNKG-LDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVK 681 (850)
Q Consensus 604 ~~~~~~~l~~~~~-~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~ 681 (850)
++.+++.+..+++ ..|-|+|||-+.++. .. -.+|+..|+-.. +-+++.||++++| +++
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a~----------------~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVAV----------------NERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc-ccceeeeeeecC----------------CCceeeccccCCcCccC
Confidence 4677888776655 467799999998876 22 457999998431 4467899999999 889
Q ss_pred CccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhc
Q 038410 682 KYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTS 761 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~ 761 (850)
+.|++|.+.++. | .|+..++++++|+|||||.++|.++.. .+++...+.+++..
T Consensus 228 svDvaV~CLSLM--g-tn~~df~kEa~RiLk~gG~l~IAEv~S-----------------------Rf~dv~~f~r~l~~ 281 (325)
T KOG3045|consen 228 SVDVAVFCLSLM--G-TNLADFIKEANRILKPGGLLYIAEVKS-----------------------RFSDVKGFVRALTK 281 (325)
T ss_pred cccEEEeeHhhh--c-ccHHHHHHHHHHHhccCceEEEEehhh-----------------------hcccHHHHHHHHHH
Confidence 999999886554 4 478999999999999999999977652 23456667777775
Q ss_pred CCceEEEEeeecC
Q 038410 762 SSRLCVEHLENIG 774 (850)
Q Consensus 762 ~~gf~v~~~~~~~ 774 (850)
.||.+.+.....
T Consensus 282 -lGF~~~~~d~~n 293 (325)
T KOG3045|consen 282 -LGFDVKHKDVSN 293 (325)
T ss_pred -cCCeeeehhhhc
Confidence 699887765543
No 290
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.77 E-value=1.4e-08 Score=97.23 Aligned_cols=142 Identities=22% Similarity=0.301 Sum_probs=103.5
Q ss_pred HHcCCCCCCeEEEEccCccHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCC-CCCEEEEEcccCCCC---CCCCc
Q 038410 609 EKARVNKGLDVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYTETKVKEAGL-QDHIRLYLCDYRQMP---EVKKY 683 (850)
Q Consensus 609 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~gl-~~~v~~~~~D~~~~~---~~~~f 683 (850)
+..+.+.|.+|||...|-|..++.++++ |+ +|..++.++..++.|+-+-=..++ +..|+++++|+.++- ++.+|
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 3445678999999999999999999998 88 999999999999988754211222 225899999976643 57889
Q ss_pred cEEEEec-chhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCccccccccccCCCCCCCHHHHHHHHhcC
Q 038410 684 DTIISCE-MIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSPGFITEYVFPGGCLPSLNRITSAMTSS 762 (850)
Q Consensus 684 D~v~s~~-~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 762 (850)
|+|+--. -|.+.++-+-.++.++++|+|||||+++- -...|...|... . -...+.+.+.+
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH-YvG~Pg~ryrG~---------------d--~~~gVa~RLr~- 267 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH-YVGNPGKRYRGL---------------D--LPKGVAERLRR- 267 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE-EeCCCCcccccC---------------C--hhHHHHHHHHh-
Confidence 9999664 35555555668899999999999999875 334444333211 1 13456666765
Q ss_pred CceEEEEe
Q 038410 763 SRLCVEHL 770 (850)
Q Consensus 763 ~gf~v~~~ 770 (850)
.||+++..
T Consensus 268 vGF~~v~~ 275 (287)
T COG2521 268 VGFEVVKK 275 (287)
T ss_pred cCceeeee
Confidence 79996654
No 291
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.77 E-value=1.8e-07 Score=94.71 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=36.1
Q ss_pred HHHHHHhhhhcCCCCeEEEccccCCCCCcchhhHHHHHHHHhcccc
Q 038410 372 SKASLELHLIQGKRGIWYSGVDQGYGFPEDGLKVGMIAAHGVLGKS 417 (850)
Q Consensus 372 ~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~A~~sG~~aA~~ilg~~ 417 (850)
.+....+.+.+-..|+|+|-+|.|+|+ ..++..|+..|+.|+...
T Consensus 439 fD~ngViG~HP~y~Nly~atGFsghGv-qqs~avgRAiaElIldG~ 483 (509)
T KOG2853|consen 439 FDDNGVIGEHPLYTNLYMATGFSGHGV-QQSPAVGRAIAELILDGA 483 (509)
T ss_pred cccCCcccCCcceeeeeeeecccccch-hcchHHHHHHHHHHhcCc
Confidence 333344555455679999999999999 699999999999999765
No 292
>PRK06126 hypothetical protein; Provisional
Probab=98.77 E-value=3.3e-08 Score=115.21 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=43.4
Q ss_pred HHHHHHHHhhc-cCceEeeCCceEEEEecCCceEEEee---CCc--EEeCCEEEEecChHHH
Q 038410 214 QIDKVSEQLKS-WGIQIRMSCEVYSVFPADEGCSIVCV---NGS--QEFYNGCVMAVHAPDA 269 (850)
Q Consensus 214 l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v~V~~~---~G~--~i~ad~VV~A~p~~~~ 269 (850)
+-+.|.+.+++ .|++|+++++|++|+.+++++.+++. +|+ ++++|.||.|.+....
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 44556666654 37899999999999999888776653 353 6899999999998754
No 293
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.76 E-value=1e-07 Score=106.12 Aligned_cols=58 Identities=7% Similarity=-0.047 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEe-cCCceEEEee-CCc--EEeCCEEEEecChHHHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFP-ADEGCSIVCV-NGS--QEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~-~~~~v~V~~~-~G~--~i~ad~VV~A~p~~~~~ 270 (850)
.+...|.+.+.+.|+.++++++++++.. +++++.|+.. +|+ +++||.||-|-+.+...
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchhh
Confidence 4555566767667899999999988865 5566777775 775 68999999999877543
No 294
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.76 E-value=2.3e-07 Score=108.62 Aligned_cols=57 Identities=12% Similarity=-0.020 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEec--CCce-EEEe---eCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPA--DEGC-SIVC---VNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~--~~~v-~V~~---~~G~--~i~ad~VV~A~p~~~ 268 (850)
..++.+|++.+++.|++|+.+++|++|..+ ++++ .|+. .+|+ ++.||.||+|++++.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 478899999999999999999999999886 3554 3443 2343 579999999999985
No 295
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.76 E-value=2.3e-08 Score=111.96 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=45.0
Q ss_pred HHHHHHHHhhc-cCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 214 QIDKVSEQLKS-WGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 214 l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
+-+.|.+.+.+ .|++++.+++|++|..+++++.|++.+|.++.+|.||.|.+.+.
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 33445555544 37899999999999988888999998888899999999998764
No 296
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.75 E-value=8.4e-08 Score=94.05 Aligned_cols=125 Identities=18% Similarity=0.316 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCeEEEEccCcc----HHHHHHHHh----c--CCEEEEEeCCHHHHHHHHHH-------
Q 038410 595 DLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWG----TLAIEIVKQ----T--GCKYTGITLSEEQLKYTETK------- 657 (850)
Q Consensus 595 ~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G----~~~~~la~~----~--~~~v~gid~s~~~~~~a~~~------- 657 (850)
.++.-+...+..+++.....+.-+|+-+||++| .+++.+.+. . ..+|+|+|+|+.+++.|++-
T Consensus 11 ~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~ 90 (196)
T PF01739_consen 11 QFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSL 90 (196)
T ss_dssp HHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGG
T ss_pred HHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHH
Confidence 344444434333444433345679999999999 455555551 1 36999999999999999851
Q ss_pred -------HHH-----cC--------CCCCEEEEEcccCC-CCCCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeE
Q 038410 658 -------VKE-----AG--------LQDHIRLYLCDYRQ-MPEVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGL 716 (850)
Q Consensus 658 -------~~~-----~g--------l~~~v~~~~~D~~~-~~~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~ 716 (850)
.++ .+ +.++|+|.+.|..+ .++.+.||+|+|-+++-++..+.....++.+++.|+|||.
T Consensus 91 ~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~ 170 (196)
T PF01739_consen 91 RGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGY 170 (196)
T ss_dssp TTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEE
T ss_pred hhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCE
Confidence 010 01 12479999999888 3466899999999999999999999999999999999999
Q ss_pred EEE
Q 038410 717 LLL 719 (850)
Q Consensus 717 ~~~ 719 (850)
+++
T Consensus 171 L~l 173 (196)
T PF01739_consen 171 LFL 173 (196)
T ss_dssp EEE
T ss_pred EEE
Confidence 999
No 297
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.75 E-value=1.5e-08 Score=111.54 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCC-----cEEeCCEEEEecChHHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNG-----SQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-----~~i~ad~VV~A~p~~~~ 269 (850)
.+-+.|.+.+++.|++|+.+++|++++.+++++.+++.++ ++++||.||-|-+.+..
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 5667788888888999999999999999988876555433 26899999999988753
No 298
>PLN02661 Putative thiazole synthesis
Probab=98.75 E-value=1.6e-07 Score=99.35 Aligned_cols=36 Identities=42% Similarity=0.694 Sum_probs=34.3
Q ss_pred cEEEECCChHHHHHHHHHHhC-CCeEEEEecCCCCCC
Q 038410 2 RVAVIGGGMSGLVSAYVLAKA-GVEVVLYEKEDSLGG 37 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~-G~~V~VlEa~~~~GG 37 (850)
||+|||||++||+||++|++. |++|+|+|++..+||
T Consensus 94 DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 899999999999999999986 899999999988887
No 299
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.74 E-value=9.2e-08 Score=111.45 Aligned_cols=60 Identities=32% Similarity=0.437 Sum_probs=46.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMG 76 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~ 76 (850)
.||+|||||++||++|+.|++.|++|+|+|++..+.... ..+ ...++..++++++|+...
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~--------------ra~--~l~~~~~~~l~~lGl~~~ 83 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGS--------------RAI--CFAKRSLEIFDRLGCGER 83 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCC--------------eEE--EEcHHHHHHHHHcCCcHH
Confidence 389999999999999999999999999999987553210 111 124567889999997653
No 300
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.74 E-value=6.3e-08 Score=104.08 Aligned_cols=107 Identities=23% Similarity=0.260 Sum_probs=90.2
Q ss_pred CCeEEEEccCccHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCEEEEEcccCCCC-----CCCCccEEEE
Q 038410 616 GLDVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYTETKVKEAGLQ-DHIRLYLCDYRQMP-----EVKKYDTIIS 688 (850)
Q Consensus 616 ~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~gl~-~~v~~~~~D~~~~~-----~~~~fD~v~s 688 (850)
|++|||+-|=||+++.++|.. |+ +||+||+|...++.|+++++.+|++ ++++++++|+.++- ...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 999999999999999999997 88 9999999999999999999999985 56899999976653 3359999997
Q ss_pred ecch-------hhhChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 689 CEMI-------ENVGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 689 ~~~~-------~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
-..- +.=..+++...+..+.++|+|||.+++.+..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 6321 1112367889999999999999999996654
No 301
>PRK06116 glutathione reductase; Validated
Probab=98.74 E-value=3e-08 Score=112.69 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCc-eEEEeeCCcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-CSIVCVNGSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|++++++++|++|+.++++ +.|++.+|+++.||.||+|++.
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 467778888999999999999999999987655 7888888988999999999875
No 302
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.74 E-value=1.2e-07 Score=107.48 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|+++++++.|++|+..++++.|++.+|+++.+|.||+|++.
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 4566778888888999999999999999877777888878888999999999985
No 303
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.73 E-value=1e-07 Score=106.47 Aligned_cols=55 Identities=7% Similarity=-0.027 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEec-CCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPA-DEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+.+.|.+.+.+.|++++ +++|+.++.+ ++.+.|++.+|++++|+.||.|++...
T Consensus 86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 566777777777788885 6789999887 556888888888899999999999875
No 304
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.73 E-value=1.9e-07 Score=106.51 Aligned_cols=55 Identities=24% Similarity=0.213 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|++++++++|++|+..++++.|++.+|+++.+|.||+|++.
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 270 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGR 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecC
Confidence 4677888999999999999999999999877778888888888999999999875
No 305
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.73 E-value=6.3e-08 Score=95.10 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=82.1
Q ss_pred CCCeEEEEccCccHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC-C---CCC-CccEEEE
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM-P---EVK-KYDTIIS 688 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~-~---~~~-~fD~v~s 688 (850)
++.+|||++||+|.+++.++.+ |+ +|++||.+++.++.++++++..++.++++++++|+.+. . ... .||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 5789999999999999999998 55 89999999999999999999999887899999998443 2 122 4788877
Q ss_pred ecchhhhChhhHHHHHHHHH--hccccCeEEEEEEe
Q 038410 689 CEMIENVGHEYIEEFFGCCE--SLLAEHGLLLLQFS 722 (850)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~--r~LkpgG~~~~~~~ 722 (850)
-..+.. ......++.+. .+|+++|.+++...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 766642 23455555554 47899998888544
No 306
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.71 E-value=2.2e-07 Score=108.66 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEe---eCCc--EEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVC---VNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~i~ad~VV~A~p~~~ 268 (850)
.+...|.+.+.+.|++|+.+++|++|..++++| .|.. .+|+ .+.|+.||+|++...
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 577888888888899999999999998877765 3332 3564 578999999998764
No 307
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.71 E-value=8e-08 Score=105.98 Aligned_cols=38 Identities=47% Similarity=0.766 Sum_probs=36.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
|+|+|||||+|||+||..|.+.|++|+|+||.+.+||.
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl 44 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL 44 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEecCCccce
Confidence 68999999999999999999999999999999999993
No 308
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.71 E-value=9.9e-08 Score=108.98 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCC--cEEeCCEEEEecChH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNG--SQEFYNGCVMAVHAP 267 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G--~~i~ad~VV~A~p~~ 267 (850)
..+.+.+.+.+++.|++++++++|++|+.+++++.|++.+| +++.+|.||+|++..
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence 46777888889999999999999999998888888877777 479999999999853
No 309
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.71 E-value=8.3e-09 Score=117.57 Aligned_cols=38 Identities=53% Similarity=0.782 Sum_probs=33.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
|+|+|||||+|||+||..|.+.|++|++||+++.+||.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~ 39 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGL 39 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCcc
Confidence 78999999999999999999999999999999999993
No 310
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.69 E-value=2.9e-07 Score=100.64 Aligned_cols=187 Identities=16% Similarity=0.139 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEeeCCcEEeCCEEEEecChHHHHHhhcCCCChHHHHhhcCcce
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCVNGSQEFYNGCVMAVHAPDALRILGNQATFDETRILGAFRY 290 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~i~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~i~~ 290 (850)
..++..|++.+.+.|++++.+++|++|+.+++++ .|.+.+| ++.||+||+|++++... +... + +..+
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~-l~~~-~-------~~~~-- 204 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE-LLPL-P-------LRPV-- 204 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh-cccC-C-------cccc--
Confidence 5899999999999999999999999999988876 5777777 69999999999998643 3320 0 0001
Q ss_pred eecEEEEecCCC---CCCCCCCCceeeeecc-cCCCceEEEEeccccCCCCCC-----CCceE---EecCCCCCCcccee
Q 038410 291 VYRDVFLHRDKN---FMPQNPAAWSAWNFVG-STNGKICLTYCLNVLQNIGET-----SMPFL---ATLNPDRTPQNTLL 358 (850)
Q Consensus 291 ~~~~v~l~~d~~---~~p~~~~~~~s~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~---~~l~~~~~~~~~~~ 358 (850)
....+.+..... -.|.....+....|.. .+++...+..... ....... ..++. ..+-|......+..
T Consensus 205 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g~~~iG~~~~-~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~ 283 (337)
T TIGR02352 205 RGQPLRLEAPAVPLLNRPLRAVVYGRRVYIVPRRDGRLVVGATME-ESGFDTTPTLGGIKELLRDAYTILPALKEARLLE 283 (337)
T ss_pred CceEEEeeccccccCCcccceEEEcCCEEEEEcCCCeEEEEEecc-ccCccCCCCHHHHHHHHHHHHHhCCCcccCcHHH
Confidence 011111111100 0011000111111211 1233333322111 0001000 00000 01111111112334
Q ss_pred eEEeccCCCChHHHHHHHHhhhhcCCCCeEEEccccCCCCCcchhhHHHHHHHHhccc
Q 038410 359 KWSTGHSVPSVAASKASLELHLIQGKRGIWYSGVDQGYGFPEDGLKVGMIAAHGVLGK 416 (850)
Q Consensus 359 ~w~~~~p~~~~~~~~~~~~l~~~~~~~~l~~aG~~~g~G~~e~A~~sG~~aA~~ilg~ 416 (850)
.|...+|. +.+..+.+......+|+|++.++.|+|+ -.+...|+.+|+.|++.
T Consensus 284 ~~~g~r~~----t~D~~piig~~~~~~~~~~~~g~~g~G~-~~~p~~g~~la~~i~~~ 336 (337)
T TIGR02352 284 TWAGLRPG----TPDNLPYIGEHPEDRRLLIATGHYRNGI-LLAPATAEVIADLILGK 336 (337)
T ss_pred heecCCCC----CCCCCCEeCccCCCCCEEEEcccccCce-ehhhHHHHHHHHHHhcC
Confidence 55555553 2233444454445679999999999999 69999999999999875
No 311
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.69 E-value=1.1e-07 Score=107.73 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhcc-CceEeeCCceEEEEecCCce-EEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGC-SIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+...|.+.+.+. |+++ +.+.|++|..+++++ .|.+.+|..+.|+.||+|++.+.
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 4556676666655 6787 567899998888775 58899999999999999999754
No 312
>PRK06185 hypothetical protein; Provisional
Probab=98.69 E-value=1.4e-07 Score=106.03 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcc-CceEeeCCceEEEEecCCce---EEEeeCCc-EEeCCEEEEecChHH-HHHhh
Q 038410 213 SQIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGC---SIVCVNGS-QEFYNGCVMAVHAPD-ALRIL 273 (850)
Q Consensus 213 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v---~V~~~~G~-~i~ad~VV~A~p~~~-~~~ll 273 (850)
.+.+.|.+.+.+. |++++.+++|+++..+++++ .+.+.+|+ +++||.||.|.+.+. +.+.+
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 4556666666553 78999999999999887775 33444664 799999999998764 33444
No 313
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.68 E-value=4.4e-08 Score=93.30 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-C
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-E 679 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~ 679 (850)
.+..+++.+.- +....++|||||-|....++..+.-.+++-+|.|-.|++.++.. +..++ .+.....|-+.++ .
T Consensus 60 ~rlaDrvfD~k--k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ 134 (325)
T KOG2940|consen 60 DRLADRVFDCK--KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFK 134 (325)
T ss_pred HHHHHHHHHHh--hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhccccc
Confidence 44445554432 34457999999999999999887334899999999999998753 33333 4567788988888 7
Q ss_pred CCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 680 VKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 680 ~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
++++|+|+|...+|++ .+++..+.+|+..|||+|.++-..+.
T Consensus 135 ens~DLiisSlslHW~--NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 135 ENSVDLIISSLSLHWT--NDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred ccchhhhhhhhhhhhh--ccCchHHHHHHHhcCCCccchhHHhc
Confidence 7999999999999999 45899999999999999999875443
No 314
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.68 E-value=1.2e-07 Score=101.76 Aligned_cols=49 Identities=22% Similarity=0.229 Sum_probs=41.0
Q ss_pred HHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChH
Q 038410 218 VSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 218 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
+.+.+++.|+++++ ++|++|+..++.+.|++.+|.++.+|+||+|++..
T Consensus 63 l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 63 MKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 44445555889988 89999999888888988888889999999999874
No 315
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.67 E-value=2e-07 Score=96.83 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCC
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEV 680 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~ 680 (850)
....+.+++.+++.++++|||||||+|.++..++++ +.+|+++|+++.+++.+++++.. .++++++++|+.+++..
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh
Confidence 345578888888889999999999999999999998 67899999999999999987643 34899999999988732
Q ss_pred CCcc---EEEEecch
Q 038410 681 KKYD---TIISCEMI 692 (850)
Q Consensus 681 ~~fD---~v~s~~~~ 692 (850)
+|| .|+++-.+
T Consensus 91 -~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 -DFPKQLKVVSNLPY 104 (253)
T ss_pred -HcCCcceEEEcCCh
Confidence 567 77777553
No 316
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.67 E-value=1.9e-07 Score=96.84 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCc-e-EEEeeC---------------CcEEeCCEEEEecChH--HHHHh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-C-SIVCVN---------------GSQEFYNGCVMAVHAP--DALRI 272 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v-~V~~~~---------------G~~i~ad~VV~A~p~~--~~~~l 272 (850)
.+++.-|.+.+++.|++|.-+..+.++..+.++ | .|.|.| |-++.|..-|+|-+-. ...++
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi 262 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQI 262 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHH
Confidence 378888999999999999999999999988666 3 555542 2357788888886533 34444
Q ss_pred h
Q 038410 273 L 273 (850)
Q Consensus 273 l 273 (850)
+
T Consensus 263 ~ 263 (621)
T KOG2415|consen 263 I 263 (621)
T ss_pred H
Confidence 4
No 317
>PRK07121 hypothetical protein; Validated
Probab=98.66 E-value=3.3e-07 Score=105.30 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhhccCceEeeCCceEEEEecC-Cce-EEEee-CCc--EEeC-CEEEEecChHH
Q 038410 211 SHSQIDKVSEQLKSWGIQIRMSCEVYSVFPAD-EGC-SIVCV-NGS--QEFY-NGCVMAVHAPD 268 (850)
Q Consensus 211 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v-~V~~~-~G~--~i~a-d~VV~A~p~~~ 268 (850)
...+.+.|.+.+++.|++|+++++|++|..++ +++ .|... +++ .+.| +.||+|++...
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 45789999999999999999999999998864 454 34443 332 5778 99999998754
No 318
>PRK04148 hypothetical protein; Provisional
Probab=98.66 E-value=3.1e-07 Score=82.76 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=76.6
Q ss_pred HHHHHHcCCCCCCeEEEEccCccH-HHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--CCC
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--EVK 681 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~-~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--~~~ 681 (850)
+.+.+.+....+.++||||||.|. ++..+++. |.+|+++|++++.++.++++ .++++..|..+-+ .-+
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHh
Confidence 345666655667899999999996 89999986 99999999999998888776 4689999988766 236
Q ss_pred CccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 682 KYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
.+|+|.|+-. ..++...+-++.+.+ |.-+++...+
T Consensus 77 ~a~liysirp-----p~el~~~~~~la~~~--~~~~~i~~l~ 111 (134)
T PRK04148 77 NAKLIYSIRP-----PRDLQPFILELAKKI--NVPLIIKPLS 111 (134)
T ss_pred cCCEEEEeCC-----CHHHHHHHHHHHHHc--CCCEEEEcCC
Confidence 7999999853 223455555555533 5556665544
No 319
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.66 E-value=2.7e-07 Score=104.91 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceE-EEeeCCcEEeCCEEEEecChHHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCS-IVCVNGSQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~i~ad~VV~A~p~~~~ 269 (850)
..+.+.|.+.+++.|++++.+ .|+.+..+++++. |.+ +|+.+.++.||+|++.+..
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 468889999998889999876 7999887766664 444 6667999999999987653
No 320
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.66 E-value=3.1e-07 Score=107.77 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=41.9
Q ss_pred HHHHHHHhhccCceEeeCCceEEEEecCCce-EEEee---CCc--EEeCCEEEEecChHH
Q 038410 215 IDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCV---NGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 215 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G~--~i~ad~VV~A~p~~~ 268 (850)
.+.|.+.+++.|++|++++.|+++..++++| .|... +|+ .+.|+.||+||+...
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 4667777877899999999999998877664 34432 453 578999999998764
No 321
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.65 E-value=1.5e-07 Score=107.30 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCC---cEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNG---SQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.++++|++++++++|++|+.+++++.|++.+| +++.||.||+|++.
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~ 270 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR 270 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC
Confidence 46777888889899999999999999998777788877766 67899999999985
No 322
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.65 E-value=1.1e-06 Score=102.51 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEee--CCc-EEeCC-EEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCV--NGS-QEFYN-GCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~--~G~-~i~ad-~VV~A~p~~~ 268 (850)
..+++.|.+.+++.|++|+++++|+++..++++| .|... ++. .+.++ .||+|++...
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 5788899999999999999999999999887765 34443 343 46785 7999998754
No 323
>PRK11445 putative oxidoreductase; Provisional
Probab=98.64 E-value=1.7e-07 Score=102.71 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=38.3
Q ss_pred ccCceEeeCCceEEEEecCCceEEEe-eCCc--EEeCCEEEEecChHHH
Q 038410 224 SWGIQIRMSCEVYSVFPADEGCSIVC-VNGS--QEFYNGCVMAVHAPDA 269 (850)
Q Consensus 224 ~~G~~i~~~~~V~~I~~~~~~v~V~~-~~G~--~i~ad~VV~A~p~~~~ 269 (850)
+.|++++.++.|++|+.+++++.|++ .+|+ +++||.||.|.+....
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 35899999999999999888888875 5664 6899999999987643
No 324
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.63 E-value=2.3e-07 Score=107.08 Aligned_cols=56 Identities=14% Similarity=0.007 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHHHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~~~ 270 (850)
.|.+.|.+.+.. ..++.+++|++|+.++++|+|++.+|+++.+|.||.|-+.+...
T Consensus 195 ~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 195 TLQQILARAVGE--DVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred HHHHHHHhhCCC--CEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHH
Confidence 566777777632 24788999999999999999999999889999999999987543
No 325
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.63 E-value=1.4e-07 Score=106.69 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhccC---ceEeeCCceEEEEec-------CCceEEEeeCCcEEeCCEEEEecChHHHH
Q 038410 213 SQIDKVSEQLKSWG---IQIRMSCEVYSVFPA-------DEGCSIVCVNGSQEFYNGCVMAVHAPDAL 270 (850)
Q Consensus 213 ~l~~~L~~~l~~~G---~~i~~~~~V~~I~~~-------~~~v~V~~~~G~~i~ad~VV~A~p~~~~~ 270 (850)
.+.+.|.+.+.+.+ ++++.+++|++|+.. +++++|++.+|++++||.||-|-+.....
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChh
Confidence 45566777776654 899999999999753 45689999999999999999999887543
No 326
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.63 E-value=3.3e-07 Score=83.51 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=112.2
Q ss_pred cCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEE
Q 038410 567 YDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGI 644 (850)
Q Consensus 567 Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gi 644 (850)
+|.--.|++-|.+...+-.+-+ ++.+. ..+.|...++.+.|.-|||+|.|+|-++..+.++ ....++.|
T Consensus 9 f~~e~~F~k~wi~~PrtVGaI~---PsSs~------lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~i 79 (194)
T COG3963 9 FDEEISFFKGWIDNPRTVGAIL---PSSSI------LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAI 79 (194)
T ss_pred HHHHHHHHHHHhcCCceeeeec---CCcHH------HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEE
Confidence 4444568888888765543332 11122 1246777888899999999999999999999988 45689999
Q ss_pred eCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC------CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEE
Q 038410 645 TLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP------EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLL 718 (850)
Q Consensus 645 d~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~------~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~ 718 (850)
+.|++.+....++.. .++++.+|+.++. ....||.|+|.-.+-.++....-++++.+...|.+||.++
T Consensus 80 E~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 80 EYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred EeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 999999999888753 5679999987765 4578999999999988888778899999999999999988
Q ss_pred EEEec
Q 038410 719 LQFSS 723 (850)
Q Consensus 719 ~~~~~ 723 (850)
--+.+
T Consensus 154 qftYg 158 (194)
T COG3963 154 QFTYG 158 (194)
T ss_pred EEEec
Confidence 76665
No 327
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.63 E-value=3.1e-07 Score=103.99 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCc-eEEEeeCC-cEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-CSIVCVNG-SQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G-~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|+++++++.|++|+.++++ +.|++.+| +.+.+|.||+|++.
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~ 263 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCC
Confidence 456778888898999999999999999876544 67777777 56999999999975
No 328
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.63 E-value=1.2e-06 Score=101.28 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=46.3
Q ss_pred ecCChHHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEe-eCCc--EEeC-CEEEEecChHH
Q 038410 207 VRRHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVC-VNGS--QEFY-NGCVMAVHAPD 268 (850)
Q Consensus 207 ~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~-~~G~--~i~a-d~VV~A~p~~~ 268 (850)
..+| ..++.+|.+.+++.|++|+++++|+++..++++| .|.. .+|+ .+.+ +.||+|++...
T Consensus 213 ~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 213 AAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred cCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 3445 7899999999999999999999999998766664 3432 3453 3556 58999998764
No 329
>PLN02697 lycopene epsilon cyclase
Probab=98.62 E-value=3.4e-07 Score=103.98 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceE-EEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCS-IVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+.+.|.+.+.+.|+++ ++++|++|+.+++++. +++.+|.++.|+.||.|++++.
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 56677888877789988 7889999998877765 4567788899999999999876
No 330
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.62 E-value=1.8e-07 Score=106.21 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=89.1
Q ss_pred CCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---CCCCccEEEEec
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---EVKKYDTIISCE 690 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---~~~~fD~v~s~~ 690 (850)
.+..+||||||.|.++..+|+. |...++|||++..-+..+.+++.+.++. |+.++..|++.+. +++++|.|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4568999999999999999998 8899999999999999999999888886 8999988876543 568899999998
Q ss_pred chhhhChh------hHHHHHHHHHhccccCeEEEEE
Q 038410 691 MIENVGHE------YIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 691 ~~~~~~~~------~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
.=.|...+ --+.+++.+.++|||||.+.+.
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 76654322 1367999999999999999983
No 331
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.2e-06 Score=79.40 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=87.1
Q ss_pred CCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecc
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEM 691 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~ 691 (850)
....-+||||||+|..+..+++. +++.+.++|+++++++...+.++.++. ++..++.|..+--..++.|+++.+..
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPP 119 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCC
Confidence 34678999999999999999988 678899999999999999999988876 68889999766543489999998753
Q ss_pred hh----------hh---------ChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 692 IE----------NV---------GHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 692 ~~----------~~---------~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
+. .+ |.+-.++++..+-.+|.|.|.+++..+.
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 21 11 3334677888899999999999996664
No 332
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.62 E-value=3.5e-07 Score=106.69 Aligned_cols=57 Identities=14% Similarity=0.235 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EE---EeeCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SI---VCVNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V---~~~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+.+.|.+.+.+.|++|+.++.|+++..++++| .| ...+|+ .+.|+.||+|++...
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 4688889998888899999999999998876664 23 234564 578999999998764
No 333
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.61 E-value=3.4e-07 Score=103.45 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=48.2
Q ss_pred ecCChHHHHHHHHHHhhccCceEeeCCceEEEEec--CCce-EEEee-CCcEEeCCEEEEecChH
Q 038410 207 VRRHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPA--DEGC-SIVCV-NGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 207 ~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~--~~~v-~V~~~-~G~~i~ad~VV~A~p~~ 267 (850)
+.++...+++.|.+.+++.|++|+++++|++|..+ ++.+ .|... ++..+.|+.||+|++..
T Consensus 118 ~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 118 LRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred ecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 44566789999999999999999999999999876 3444 34443 33578999999999864
No 334
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.61 E-value=3.3e-07 Score=99.76 Aligned_cols=63 Identities=10% Similarity=-0.060 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceE-EEeeCC--cEEeCCEEEEecChHHHHHhhc
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCS-IVCVNG--SQEFYNGCVMAVHAPDALRILG 274 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G--~~i~ad~VV~A~p~~~~~~ll~ 274 (850)
.++.++|.+.+++.|+++..+++|+++..+++++. |.+.++ ..++||+||+|++++....|+.
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a 328 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVA 328 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHh
Confidence 47899999999999999999999999999988875 555665 3799999999999985555543
No 335
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=6.2e-07 Score=105.27 Aligned_cols=36 Identities=31% Similarity=0.296 Sum_probs=33.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (850)
||+|||||+|||+||..+++.|.+|+|+|+....||
T Consensus 10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 10 DVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred cEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 899999999999999999999999999999876666
No 336
>PLN02507 glutathione reductase
Probab=98.61 E-value=1.4e-06 Score=99.73 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|+++++++.|++|+..++++.|++.+|+++.+|.||++++.
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC
Confidence 4677778888989999999999999999877778888888888999999999885
No 337
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.61 E-value=2.5e-07 Score=95.63 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=82.2
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCEEEEEcccCCC-C---CCCCccEEE
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYTETKVKEAGLQ-DHIRLYLCDYRQM-P---EVKKYDTII 687 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~gl~-~~v~~~~~D~~~~-~---~~~~fD~v~ 687 (850)
..|.+|||+-|=+|+++.+++.. |+ +|+.||.|..+++.|+++++.+|++ ++++++..|+.+. . ..++||+||
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 35889999999999999999886 76 7999999999999999999999986 6899999997653 2 346899999
Q ss_pred Eecc------hhhhChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 688 SCEM------IENVGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 688 s~~~------~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
.-.. +.- .+++..++..+.++|+|||.+++.+.+
T Consensus 201 lDPPsF~k~~~~~--~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 201 LDPPSFAKSKFDL--ERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp E--SSEESSTCEH--HHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred ECCCCCCCCHHHH--HHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 7632 221 256888999999999999998875543
No 338
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.6e-07 Score=87.59 Aligned_cols=110 Identities=23% Similarity=0.288 Sum_probs=86.7
Q ss_pred HHHHHHHcC--CCCCCeEEEEccCccHHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcC--------C-CCCEEE
Q 038410 604 VSLLIEKAR--VNKGLDVLEIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYTETKVKEAG--------L-QDHIRL 669 (850)
Q Consensus 604 ~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~g--------l-~~~v~~ 669 (850)
...+++.|. ++||.+.||||+|+|.++..++.. +|..++|||.-++.++++++++...- + ..++.+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 345666666 799999999999999999888866 45566999999999999999987532 1 236789
Q ss_pred EEcccCCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 670 YLCDYRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 670 ~~~D~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
+.+|.+... +..+||+|.+-... +..-+++...|||||++++--
T Consensus 149 vvGDgr~g~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 149 VVGDGRKGYAEQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EeCCccccCCccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEee
Confidence 999998877 66899999876332 445566777899999999843
No 339
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.61 E-value=1.3e-07 Score=98.05 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=83.6
Q ss_pred CCeEEEEccCcc----HHHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHH------------------HH--------
Q 038410 616 GLDVLEIGCGWG----TLAIEIVKQT-----GCKYTGITLSEEQLKYTETKV------------------KE-------- 660 (850)
Q Consensus 616 ~~~vLDiGcG~G----~~~~~la~~~-----~~~v~gid~s~~~~~~a~~~~------------------~~-------- 660 (850)
.-+|+..||.+| .+++.+.+.. ..+|+|+|||+.+++.|++-. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 4555555531 368999999999999998641 00
Q ss_pred ----cCCCCCEEEEEcccCCCC--CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEE
Q 038410 661 ----AGLQDHIRLYLCDYRQMP--EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLL 719 (850)
Q Consensus 661 ----~gl~~~v~~~~~D~~~~~--~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~ 719 (850)
..+...|+|.+.|+.+.+ +.+.||+|+|.+++.|+.++....+++++++.|+|||++++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 013356889999987744 35899999999999999988899999999999999999888
No 340
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.61 E-value=2.2e-07 Score=104.23 Aligned_cols=37 Identities=54% Similarity=0.943 Sum_probs=35.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCe-EEEEecCCCCCC
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVE-VVLYEKEDSLGG 37 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~-V~VlEa~~~~GG 37 (850)
.||+|||||++||++|++|.++|.+ ++||||++.+||
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg 46 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC
Confidence 3899999999999999999999998 999999999999
No 341
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.60 E-value=2.7e-07 Score=106.34 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=44.7
Q ss_pred HHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChH
Q 038410 214 QIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 214 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
+.+.+.+.+++.|++++++++|++|..+++.+.|++.+|+.+.||+||+|++..
T Consensus 269 l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 269 LAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 344455556666899999999999998877788888888889999999999975
No 342
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.59 E-value=2.8e-07 Score=99.07 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhcc-CceEeeCCceEEEEecCCce-EEEeeCCcEEeCCEEEEecChH
Q 038410 213 SQIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGC-SIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 213 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
.+...+.+.++++ +.+| ...+|++|..++++| .|.+.+|+.+.+|.||+|++..
T Consensus 96 ~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTI-IQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp HHHHHHHHHHHTSTTEEE-EES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred HHHHHHHHHHhcCCCeEE-EEcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 4555566666663 5677 477999999998885 7999999999999999999983
No 343
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.59 E-value=3.9e-07 Score=103.30 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|+++++++.|++|+.+++++.|.+.+| ++.+|.||+|++.
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecC
Confidence 46778888899999999999999999998777777777666 4899999999875
No 344
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.58 E-value=1e-06 Score=101.96 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCC-ce-EEEe-------eCC-cEEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADE-GC-SIVC-------VNG-SQEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v-~V~~-------~~G-~~i~ad~VV~A~p~~~ 268 (850)
..+.+.|.+.+++.|++|+.++.|+++..+++ ++ .|.. .++ ..+.|+.||+|++...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 46888999999888999999999999988754 43 3333 233 3578999999998754
No 345
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.58 E-value=2.7e-07 Score=102.33 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhcCCCcEEEe------cCChHHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCc--EEeC
Q 038410 186 AFSVLSFCRLFQLFGHPQCVTV------RRHSHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGS--QEFY 257 (850)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~------~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~--~i~a 257 (850)
....++|...+..++......- ++--..+.+.+.+.+++.|.+++++++|++++..++++.|++++|+ ++++
T Consensus 182 G~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~a 261 (454)
T COG1249 182 GYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEA 261 (454)
T ss_pred CHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEe
Confidence 3455667666666665544322 2223578888999999988999999999999998887888888886 6889
Q ss_pred CEEEEecCh
Q 038410 258 NGCVMAVHA 266 (850)
Q Consensus 258 d~VV~A~p~ 266 (850)
|.|++|++=
T Consensus 262 d~vLvAiGR 270 (454)
T COG1249 262 DAVLVAIGR 270 (454)
T ss_pred eEEEEccCC
Confidence 999999973
No 346
>PRK06996 hypothetical protein; Provisional
Probab=98.57 E-value=7.3e-07 Score=99.65 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCC---cEEeCCEEEEecCh--HHHHHhh
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNG---SQEFYNGCVMAVHA--PDALRIL 273 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~i~ad~VV~A~p~--~~~~~ll 273 (850)
.+-+.|.+.+++.|++++.+++|++|+.++++|+|+..+| ++++||.||-|.+. ....+.+
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence 5677788888888999999999999999999999887754 57999999999874 3444444
No 347
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=8.6e-07 Score=103.00 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEee---CCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCV---NGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G~--~i~ad~VV~A~p~~~ 268 (850)
..+...|.+.+.+.|++|+.++.|+++..++++| .|... +|+ .+.|+.||+||+...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 3688888888887899999999999999877765 34432 332 578999999998765
No 348
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.56 E-value=4.2e-07 Score=100.36 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
.+-+.+.+.+. .++.+++++.|++|+..++++.|++.+|++++|+.||-|.++.
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 45556777776 4667889999999999999899999999999999999999854
No 349
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.55 E-value=6.8e-07 Score=99.47 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=92.8
Q ss_pred CCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--CCCCccEEE
Q 038410 612 RVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--EVKKYDTII 687 (850)
Q Consensus 612 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--~~~~fD~v~ 687 (850)
++++|++|||++||.|+=+.++|+.. ...|+++|+++.-++..++++++.|+. ++.+.+.|...+. ..+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence 67899999999999999999999873 358999999999999999999999986 7899999988764 346899999
Q ss_pred ----Ee--cchhhhCh-------h-------hHHHHHHHHHhccccCeEEEEEEecCCC
Q 038410 688 ----SC--EMIENVGH-------E-------YIEEFFGCCESLLAEHGLLLLQFSSVPD 726 (850)
Q Consensus 688 ----s~--~~~~~~~~-------~-------~~~~~~~~~~r~LkpgG~~~~~~~~~~~ 726 (850)
|+ +|+..-++ + ...+++..+.++|||||+++-++.+...
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 33 23332211 1 1267899999999999999998887543
No 350
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.55 E-value=3.5e-06 Score=98.27 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEee-CCc--EEeC-CEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCV-NGS--QEFY-NGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~-~G~--~i~a-d~VV~A~p~~~ 268 (850)
..++.+|.+.+++.|++|+++++|+++..++++| .|... +|+ .+.| +.||+|++...
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence 4688999999999999999999999998776665 35443 343 4666 68999998764
No 351
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=3.4e-07 Score=92.39 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCC
Q 038410 602 RKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVK 681 (850)
Q Consensus 602 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~ 681 (850)
..++.|++.+++.++++|||||+|.|.++..++++ +.+|++|++++.+++..+++.. ..++++++++|+...+...
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchh
Confidence 44689999999999999999999999999999998 8899999999999999999875 3458999999998887333
Q ss_pred --CccEEEEecch
Q 038410 682 --KYDTIISCEMI 692 (850)
Q Consensus 682 --~fD~v~s~~~~ 692 (850)
.++.|+++-..
T Consensus 93 l~~~~~vVaNlPY 105 (259)
T COG0030 93 LAQPYKVVANLPY 105 (259)
T ss_pred hcCCCEEEEcCCC
Confidence 78999998654
No 352
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.55 E-value=4.6e-07 Score=100.12 Aligned_cols=56 Identities=13% Similarity=-0.062 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCceEE-EeeCCc--EEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSI-VCVNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V-~~~~G~--~i~ad~VV~A~p~~~ 268 (850)
.+.+.|.+.+++.|++|+++++|++++..++++.+ .+.+|+ .++||.||+|++...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 78899999999999999999999999988877654 444553 588999999998753
No 353
>PLN02823 spermine synthase
Probab=98.55 E-value=6.6e-07 Score=95.37 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=81.8
Q ss_pred CCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCEEEEEcccCCCC--CCCCccEEEE
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAG--L-QDHIRLYLCDYRQMP--EVKKYDTIIS 688 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~g--l-~~~v~~~~~D~~~~~--~~~~fD~v~s 688 (850)
...+||.||+|.|..+..+.+. ...+|+.||+++++++.|++.....+ + .++++++.+|.++.- ..++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4569999999999999999987 34689999999999999999875321 1 358999999987753 4578999998
Q ss_pred ecchhhh----Ch-hhHHHHHH-HHHhccccCeEEEEEEe
Q 038410 689 CEMIENV----GH-EYIEEFFG-CCESLLAEHGLLLLQFS 722 (850)
Q Consensus 689 ~~~~~~~----~~-~~~~~~~~-~~~r~LkpgG~~~~~~~ 722 (850)
-.. ... +. -.-..+++ .+.+.|+|||.++++..
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 631 111 00 01256887 89999999999988643
No 354
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.54 E-value=1.7e-06 Score=100.91 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEe--eCCc-EEeC-CEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVC--VNGS-QEFY-NGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~--~~G~-~i~a-d~VV~A~p~~~ 268 (850)
..++..|.+.+++.|++|+++++|++|..++++| .|.. .++. .+.| +.||+|++.+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 4688999999999999999999999998876664 3433 3443 4788 99999998764
No 355
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.54 E-value=1.1e-06 Score=98.90 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhc-cCceEeeCCceEEEEecCCce-EEE-eeCCc--EEeCCEEEEecChH
Q 038410 212 HSQIDKVSEQLKS-WGIQIRMSCEVYSVFPADEGC-SIV-CVNGS--QEFYNGCVMAVHAP 267 (850)
Q Consensus 212 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v-~V~-~~~G~--~i~ad~VV~A~p~~ 267 (850)
..+.+.|.+.+++ .|++|+++++|++|..+++++ .|. +.+|+ .+.|+.||+|++..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 4688888887765 489999999999998776664 332 33454 58899999999874
No 356
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.54 E-value=5.1e-07 Score=104.18 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=45.3
Q ss_pred HHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChH
Q 038410 214 QIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 214 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
+.+.+.+.+++.|++++++++|++|...++.+.|++.+|+++.||.||+|++..
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 444556666666899999999999999887888988888889999999999974
No 357
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.53 E-value=4.6e-07 Score=98.73 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=82.6
Q ss_pred CCCeEEEEccCccHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCC-CCCccEEEEecch
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPE-VKKYDTIISCEMI 692 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~-~~~fD~v~s~~~~ 692 (850)
++.+|||++||+|.+++.++.+.+ .+|+++|++++.++.++++++.+++. ++++.++|+..+.. .++||+|+... +
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~ 134 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F 134 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C
Confidence 357899999999999999988744 48999999999999999999999886 67899999876432 46799999965 2
Q ss_pred hhhChhhHHHHHHHHHhccccCeEEEEE
Q 038410 693 ENVGHEYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 693 ~~~~~~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
|. ...++....+.++|||.++++
T Consensus 135 ---Gs--~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ---GS--PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---CC--cHHHHHHHHHHhcCCCEEEEE
Confidence 32 357888877788999999996
No 358
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.52 E-value=3.9e-07 Score=103.77 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEee---C--CcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCV---N--GSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~---~--G~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|++|++++.|++|+.+++++.++.. + ++++.+|.||+|++.
T Consensus 215 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 274 (466)
T PRK06115 215 TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR 274 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC
Confidence 457788888999999999999999999877666655432 2 357899999999985
No 359
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=1.5e-06 Score=100.77 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCc-e-EEEe---eCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-C-SIVC---VNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v-~V~~---~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+.+.|.+.+++.|++|++++.|+++..++++ + .|.. .+|+ .+.|+.||+||+...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 468888888888889999999999999887665 4 3332 4564 578999999998754
No 360
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.52 E-value=1.2e-06 Score=84.81 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=82.3
Q ss_pred eEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhhhC
Q 038410 618 DVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIENVG 696 (850)
Q Consensus 618 ~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~~~ 696 (850)
+++|||+|.|..++.+|-. |..+++.+|.+..-+.+.++-+.+.|++ ++++++..+++.....+||.|+|-.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv~---- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAVA---- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehhc----
Confidence 8999999999999988877 7899999999999999999999999997 899999999993355899999998652
Q ss_pred hhhHHHHHHHHHhccccCeEEEE
Q 038410 697 HEYIEEFFGCCESLLAEHGLLLL 719 (850)
Q Consensus 697 ~~~~~~~~~~~~r~LkpgG~~~~ 719 (850)
.+..+++-+..+||+||++++
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEE
Confidence 367899999999999999987
No 361
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.51 E-value=1.7e-06 Score=98.77 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEee--CC--cEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCV--NG--SQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.++++|++|++|++|++|+.+++++.|++. +| +++.+|.||+|++.
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 467788889999999999999999999877666666554 56 36899999999874
No 362
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.51 E-value=1.4e-06 Score=102.64 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEe---eCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVC---VNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+...|.+.+.+.|++|+.+++|++|..+++++ .|.. .+|+ .+.|+.||+||+...
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4677788888888899999999999999877764 3332 3564 457999999998764
No 363
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.51 E-value=1.4e-06 Score=90.23 Aligned_cols=155 Identities=13% Similarity=0.133 Sum_probs=115.6
Q ss_pred CCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhh
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIEN 694 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~ 694 (850)
.-...+|+|.|.|..+..+..++ -+|.+|+.+...+..++..+. . .|+.+-+|..+-.| +-|+|+..++++|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~~P--~~daI~mkWiLhd 248 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQDTP--KGDAIWMKWILHD 248 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-C----CcceecccccccCC--CcCeEEEEeeccc
Confidence 34789999999999999999873 458999999888888877763 3 37888888544332 3469999999999
Q ss_pred hChhhHHHHHHHHHhccccCeEEEEEEecCCC-CcCCCC----cCccccccccccCCCCCCCHHHHHHHHhcCCceEEEE
Q 038410 695 VGHEYIEEFFGCCESLLAEHGLLLLQFSSVPD-QCYDGH----RLSPGFITEYVFPGGCLPSLNRITSAMTSSSRLCVEH 769 (850)
Q Consensus 695 ~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~-~~~~~~----~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~ 769 (850)
.++++..++|++|+..|+|||.+++.+...+. ...+.. ....+..+..+.++|.-.+..+....+. ++||.+..
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~-~~gF~~~~ 327 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLP-EEGFPVCM 327 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcch-hhcCceeE
Confidence 99999999999999999999999998886664 222211 1123333444456677777888765555 47998888
Q ss_pred eeecCCcHH
Q 038410 770 LENIGIHFY 778 (850)
Q Consensus 770 ~~~~~~~y~ 778 (850)
+.....+|.
T Consensus 328 ~~~~~~~~~ 336 (342)
T KOG3178|consen 328 VALTAYSYS 336 (342)
T ss_pred EEeccCccc
Confidence 777666554
No 364
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.51 E-value=5.1e-07 Score=87.89 Aligned_cols=108 Identities=24% Similarity=0.359 Sum_probs=83.4
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCC-CC----CCCCccEEEE
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQ-MP----EVKKYDTIIS 688 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~-~~----~~~~fD~v~s 688 (850)
-+|.+|||+-||+|.+++.++.+.-.+|+.||.|++.++..+++++..++.++++++..|... +. ...+||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 368899999999999999999983359999999999999999999999998889999999543 22 3579999999
Q ss_pred ecchhhhChhhHHHHHHHHH--hccccCeEEEEEEec
Q 038410 689 CEMIENVGHEYIEEFFGCCE--SLLAEHGLLLLQFSS 723 (850)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~--r~LkpgG~~~~~~~~ 723 (850)
-..+..- ..+...++.+. .+|+++|.+++....
T Consensus 121 DPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 121 DPPYAKG--LYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp --STTSC--HHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCCcccc--hHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 9877653 11477788877 899999999996654
No 365
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.50 E-value=2e-06 Score=98.52 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhc-cCceEeeCCceEEEEecCCceE-EEeeC-C--cEEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKS-WGIQIRMSCEVYSVFPADEGCS-IVCVN-G--SQEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v~-V~~~~-G--~~i~ad~VV~A~p~~~ 268 (850)
..+.+.|.+.+++ .|++|+.++.|++|..+++++. |...+ + ..+.++.||+|++...
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4688889888887 5899999999999988766653 44433 3 3678999999999865
No 366
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=1.5e-06 Score=101.59 Aligned_cols=57 Identities=9% Similarity=-0.028 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhc-cCceEeeCCceEEEEecCCce-EEE---eeCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKS-WGIQIRMSCEVYSVFPADEGC-SIV---CVNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v-~V~---~~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+++.|.+.+.+ .|++|+.++.|+++..+++++ .|. ..+|+ .+.|+.||+|++...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 3578888887765 589999999999998877664 332 24564 578999999998764
No 367
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.50 E-value=1.8e-06 Score=101.19 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEe-cCCce-EEEe---eCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFP-ADEGC-SIVC---VNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~-~~~~v-~V~~---~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+...|.+.+++.|++|+.+++|+++.. ++++| .|.. .+|+ .+.|+.||+||+...
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 46888999988888999999999999887 45554 3432 3564 578999999998754
No 368
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.50 E-value=4.9e-07 Score=89.10 Aligned_cols=86 Identities=20% Similarity=0.333 Sum_probs=76.7
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCc
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKY 683 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~f 683 (850)
++.|+++.++++++.|||||.|+|.++..+.+. +.+|+++++++.|+...+++.+....+.+.+++++|+...+. ..|
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~f 124 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PRF 124 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-ccc
Confidence 568999999999999999999999999999998 999999999999999999999866556899999999887652 379
Q ss_pred cEEEEecc
Q 038410 684 DTIISCEM 691 (850)
Q Consensus 684 D~v~s~~~ 691 (850)
|.+|++-.
T Consensus 125 d~cVsNlP 132 (315)
T KOG0820|consen 125 DGCVSNLP 132 (315)
T ss_pred ceeeccCC
Confidence 99999743
No 369
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=1.5e-06 Score=101.36 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEec-CCce-EEEe---eCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPA-DEGC-SIVC---VNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~~---~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+...|.+.+.+.|++|++++.|+++..+ +++| .|.. .+|+ .+.|+.||+||+...
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 468888998888889999999999999885 5554 3432 3564 567999999998764
No 370
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.50 E-value=1.1e-06 Score=100.17 Aligned_cols=55 Identities=20% Similarity=0.121 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEee---CCcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCV---NGSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~---~G~~i~ad~VV~A~p~ 266 (850)
..+...+.+.+++.|++++++++|++|+.+++.+.|++. +++++.+|.||+|++.
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC
Confidence 456777888888889999999999999987666665553 2357999999999874
No 371
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.49 E-value=1.1e-06 Score=100.46 Aligned_cols=36 Identities=39% Similarity=0.680 Sum_probs=34.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
||+|||||++|++||..|++.|++|+|+|+ +.+||.
T Consensus 6 dvvVIG~GpaG~~aA~~aa~~G~~v~lie~-~~~GG~ 41 (472)
T PRK05976 6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEK-GKLGGT 41 (472)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEc-cCCCcc
Confidence 899999999999999999999999999999 488993
No 372
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.49 E-value=1e-06 Score=88.42 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=69.4
Q ss_pred HHHHHHHHHHcCC-CCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCE-EEEEcccCCCC
Q 038410 601 MRKVSLLIEKARV-NKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHI-RLYLCDYRQMP 678 (850)
Q Consensus 601 ~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v-~~~~~D~~~~~ 678 (850)
..|+..+++.+++ .++.+|||||||+|.++..++++...+|+|+|+|++|+.... ++. .++ .+...|++.+.
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l---~~~---~~v~~~~~~ni~~~~ 133 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL---RQD---ERVKVLERTNIRYVT 133 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH---hcC---CCeeEeecCCcccCC
Confidence 4566778888776 477899999999999999999973348999999999887621 111 133 23444555332
Q ss_pred ------CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEE
Q 038410 679 ------EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLL 719 (850)
Q Consensus 679 ------~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~ 719 (850)
.-..||+++++. ...+..+.++|+| |.+++
T Consensus 134 ~~~~~~d~~~~DvsfiS~----------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 134 PADIFPDFATFDVSFISL----------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred HhHcCCCceeeeEEEeeh----------HhHHHHHHHHhCc-CeEEE
Confidence 113566555542 2357789999999 77665
No 373
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.49 E-value=1.2e-06 Score=99.13 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|++++++++|++|+.+++++.+++ +|+++.+|.||+|++.
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~ 251 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGR 251 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCC
Confidence 45666677888888999999999999988766666654 5668999999999875
No 374
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.49 E-value=4.2e-08 Score=110.19 Aligned_cols=38 Identities=47% Similarity=0.736 Sum_probs=32.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (850)
||||||||+||++||+.+++.|.+|+|+|+.+.+||..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~ 38 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMA 38 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcc
Confidence 89999999999999999999999999999999999954
No 375
>PRK14694 putative mercuric reductase; Provisional
Probab=98.48 E-value=2.2e-06 Score=97.87 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|+++++++.|++|+.+++.+.+.+.++ ++.+|.||+|++.
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~ 271 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGR 271 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCC
Confidence 56788889999999999999999999998776677766555 6999999999975
No 376
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=1.9e-06 Score=100.64 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecC-Cce-EEE---eeCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPAD-EGC-SIV---CVNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v-~V~---~~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+...|.+.+.+.|++|+++++|+++..++ ++| .|. ..+|+ .+.|+.||+||+...
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 3688899998888899999999999998875 444 343 23564 678999999998754
No 377
>PRK06370 mercuric reductase; Validated
Probab=98.48 E-value=1.2e-06 Score=99.85 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEe--e-CCcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVC--V-NGSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~--~-~G~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|++++++++|.+|+..++++.|++ . ++.++.+|.||+|++.
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCC
Confidence 35667788888889999999999999998766655443 2 3457999999999875
No 378
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.48 E-value=1.3e-06 Score=101.64 Aligned_cols=37 Identities=32% Similarity=0.605 Sum_probs=35.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
||+|||+|+|||+||+.++++|.+|+||||....||.
T Consensus 13 DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 13 DVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 8999999999999999999999999999999988883
No 379
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.48 E-value=1.7e-06 Score=100.99 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=32.2
Q ss_pred EEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 038410 3 VAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (850)
Q Consensus 3 V~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (850)
|+|||||+|||+||..+++.|.+|+|+||...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 79999999999999999999999999999885654
No 380
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.47 E-value=7.8e-07 Score=101.61 Aligned_cols=55 Identities=9% Similarity=0.251 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeC--C--cEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVN--G--SQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~--G--~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|++|+++++|++|+.+++++.|+..+ | +++.+|.||+|++.
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence 5677888888988999999999999999877777776554 3 46899999999885
No 381
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.47 E-value=1.5e-06 Score=100.75 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEe-eCCc--EEeCC-EEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVC-VNGS--QEFYN-GCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~-~~G~--~i~ad-~VV~A~p~~~ 268 (850)
..++..|.+.+++.|++|+++++|++|..++++| .|.. .+|+ .+.++ .||+|++...
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 4688899999999999999999999999877765 3433 3453 46784 7999998753
No 382
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.6e-07 Score=81.69 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=70.8
Q ss_pred HHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCCCcc
Q 038410 606 LLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVKKYD 684 (850)
Q Consensus 606 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~~fD 684 (850)
.|-+..+--.|++++|+|||.|-+++..+--..-.|.|+||+++.++.+++++.+..+ +++++++|+.++. ..+.||
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fD 116 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFD 116 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEe
Confidence 4444455457899999999999999665543345799999999999999999998877 6799999999987 558899
Q ss_pred EEEEecchh
Q 038410 685 TIISCEMIE 693 (850)
Q Consensus 685 ~v~s~~~~~ 693 (850)
.++.+..|.
T Consensus 117 taviNppFG 125 (185)
T KOG3420|consen 117 TAVINPPFG 125 (185)
T ss_pred eEEecCCCC
Confidence 999998764
No 383
>PTZ00058 glutathione reductase; Provisional
Probab=98.46 E-value=1.4e-06 Score=100.08 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCC-ceEEEeeCC-cEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADE-GCSIVCVNG-SQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G-~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|+++++++.|.+|+.+++ ++.+...++ +++.+|.||+|++.
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCC
Confidence 46777888899999999999999999987644 465554444 47999999999974
No 384
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.46 E-value=2.2e-06 Score=100.43 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEec-CCce-EEEe---eCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPA-DEGC-SIVC---VNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~~---~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+++.|.+.+.+.|++|+.++.|+++..+ +++| .|.. .+|+ .+.|+.||+||+...
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 468888988888889999999999998876 4554 3432 3564 578999999998764
No 385
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.46 E-value=1.1e-06 Score=100.26 Aligned_cols=37 Identities=38% Similarity=0.630 Sum_probs=35.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
||+|||||++|++||..|++.|++|+|+|+.+.+||.
T Consensus 6 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~ 42 (471)
T PRK06467 6 QVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGV 42 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccc
Confidence 8999999999999999999999999999997789993
No 386
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=3.1e-06 Score=98.78 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEec-CCce-EEEe---eCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPA-DEGC-SIVC---VNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~~---~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+.+.|.+.+.+.|++++.++.|+++..+ ++++ .|.. .+|+ .+.++.||+|++...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 468888988888889999999999999876 3444 4433 3454 578999999998764
No 387
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.45 E-value=7.7e-07 Score=93.59 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=92.7
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCC-CCccEEEEecc
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTGCK-YTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEV-KKYDTIISCEM 691 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~~~-v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~-~~fD~v~s~~~ 691 (850)
++|.+|||.=+|.|.+++.+|+. +.. |+++|++|..+++.+++++.+++.+.|+.+++|.+++.+. +.||.|+....
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 56999999999999999999997 554 9999999999999999999999998899999999999844 88999998754
Q ss_pred hhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCC
Q 038410 692 IENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQ 727 (850)
Q Consensus 692 ~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~ 727 (850)
- .-..++....+.+|+||.+-.+.+...+.
T Consensus 266 ~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred C------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 2 12567778888889999999988775543
No 388
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.45 E-value=9.8e-07 Score=93.03 Aligned_cols=34 Identities=35% Similarity=0.783 Sum_probs=31.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCC
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSL 35 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~ 35 (850)
+||||||||+||++|..|++.|++|+|||++..+
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 7999999999999999999999999999996544
No 389
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.44 E-value=4.5e-07 Score=94.26 Aligned_cols=84 Identities=11% Similarity=0.127 Sum_probs=72.8
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--- 678 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--- 678 (850)
++.+++.+.++++..+||.+||.|+.+..+++.. .++|+|+|.++++++.|++++.+ .+++++++.|+.++.
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHH
Confidence 4678888888999999999999999999999983 48999999999999999998765 358999999999875
Q ss_pred CCC--CccEEEEec
Q 038410 679 EVK--KYDTIISCE 690 (850)
Q Consensus 679 ~~~--~fD~v~s~~ 690 (850)
+++ ++|.|+...
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 222 799999774
No 390
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.44 E-value=3.4e-06 Score=96.94 Aligned_cols=57 Identities=11% Similarity=0.133 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhcc-CceEeeCCceEEEEecCCce-EEEee-CCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGC-SIVCV-NGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v-~V~~~-~G~--~i~ad~VV~A~p~~~ 268 (850)
..+.+.|.+.+.+. |++|+.+++|++|..++++| .|... +++ .+.|+.||+|++...
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 46888898888765 89999999999998776664 34433 232 588999999998753
No 391
>PLN02985 squalene monooxygenase
Probab=98.44 E-value=2.7e-06 Score=97.37 Aligned_cols=60 Identities=28% Similarity=0.383 Sum_probs=44.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMG 76 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~ 76 (850)
.||+|||||++||++|+.|+++|++|+|+|+......+ ..| . ...++..+.++++|+...
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~-----~~g-------~----~L~p~g~~~L~~LGl~d~ 103 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPER-----MMG-------E----FMQPGGRFMLSKLGLEDC 103 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCcc-----ccc-------c----ccCchHHHHHHHcCCcch
Confidence 38999999999999999999999999999996432111 001 1 123456778899997653
No 392
>PRK12839 hypothetical protein; Provisional
Probab=98.44 E-value=4.4e-06 Score=96.91 Aligned_cols=38 Identities=37% Similarity=0.604 Sum_probs=36.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (850)
||+|||+|++||+||+.|++.|.+|+|+|+...+||.+
T Consensus 10 dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 10 DVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGAT 47 (572)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 89999999999999999999999999999999999953
No 393
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.43 E-value=9.1e-07 Score=99.65 Aligned_cols=55 Identities=11% Similarity=0.046 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCc--eEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG--CSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+.+-|.+.+.++|++++.++ |+++..++++ ..|++.+|++++||.||=|++...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 566778888888899998874 8888887666 378999999999999999999754
No 394
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.43 E-value=7.7e-06 Score=83.78 Aligned_cols=146 Identities=17% Similarity=0.250 Sum_probs=103.4
Q ss_pred HHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCcc----HHHHHHHHhc------CCEE
Q 038410 572 ELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWG----TLAIEIVKQT------GCKY 641 (850)
Q Consensus 572 ~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G----~~~~~la~~~------~~~v 641 (850)
+..+.+++.-.+-...+|.+ ...++.-+...+..++..... ..-+|+-+||++| .+++.+.+.. .++|
T Consensus 55 ~e~~~~l~~ltin~T~FFR~-~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I 132 (268)
T COG1352 55 EELQAFLDALTINVTEFFRD-PEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKI 132 (268)
T ss_pred HHHHHHHHHhhhccchhccC-cHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEE
Confidence 33444444332333455544 345666555555555554322 4579999999999 4566666552 4799
Q ss_pred EEEeCCHHHHHHHHHH-----HHHcCC-----------------------CCCEEEEEcccCCCC-CCCCccEEEEecch
Q 038410 642 TGITLSEEQLKYTETK-----VKEAGL-----------------------QDHIRLYLCDYRQMP-EVKKYDTIISCEMI 692 (850)
Q Consensus 642 ~gid~s~~~~~~a~~~-----~~~~gl-----------------------~~~v~~~~~D~~~~~-~~~~fD~v~s~~~~ 692 (850)
+|+|||...++.|++- ....++ ...|.|...|..+-+ ..+.||+|+|-+++
T Consensus 133 ~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVL 212 (268)
T COG1352 133 LATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVL 212 (268)
T ss_pred EEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceE
Confidence 9999999999999751 111122 235778888876655 66789999999999
Q ss_pred hhhChhhHHHHHHHHHhccccCeEEEE
Q 038410 693 ENVGHEYIEEFFGCCESLLAEHGLLLL 719 (850)
Q Consensus 693 ~~~~~~~~~~~~~~~~r~LkpgG~~~~ 719 (850)
-.+..+...++++.++..|+|||.+++
T Consensus 213 IYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 213 IYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 999988899999999999999999999
No 395
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.43 E-value=5.1e-06 Score=96.58 Aligned_cols=37 Identities=49% Similarity=0.837 Sum_probs=35.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCC--CCCCc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKED--SLGGH 38 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~--~~GG~ 38 (850)
||+|||+|+|||+||..++++|.+|+|||+.. .+||.
T Consensus 6 DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 6 DVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 89999999999999999999999999999998 78894
No 396
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.43 E-value=1.7e-06 Score=94.37 Aligned_cols=111 Identities=11% Similarity=0.229 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-- 678 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-- 678 (850)
...++.+.+.+... +.+|||++||+|.+++.+++. ..+|+|||+|+.+++.|+++++.+++. +++++.+|+.+.-
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQA 269 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHH
Confidence 44555666655433 357999999999999999987 569999999999999999999999985 8999999986631
Q ss_pred --C-------------CCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 679 --E-------------VKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 679 --~-------------~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
. ..+||+|+.-..-.-+ .+..++.+.+ |++.++++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYISC 320 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEEe
Confidence 0 1258999988663211 2445555543 677777743
No 397
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.42 E-value=1.6e-06 Score=94.02 Aligned_cols=110 Identities=12% Similarity=0.192 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCC--
Q 038410 602 RKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPE-- 679 (850)
Q Consensus 602 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~-- 679 (850)
..++.+++.+...+ .+|||++||+|.+++.+++. ..+|+|||+|+++++.|+++++.+++. +++++.+|..++..
T Consensus 185 ~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~ 261 (353)
T TIGR02143 185 KMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAM 261 (353)
T ss_pred HHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHH
Confidence 44456666655433 47999999999999999987 469999999999999999999999986 79999999866321
Q ss_pred ---------C------CCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 680 ---------V------KKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 680 ---------~------~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
. ..||+|+.-..= -|- .+.+++.+. +|++.+++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~v~lDPPR--~G~--~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 262 NGVREFRRLKGIDLKSYNCSTIFVDPPR--AGL--DPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred hhccccccccccccccCCCCEEEECCCC--CCC--cHHHHHHHH---cCCcEEEEEc
Confidence 0 138999987651 221 244555554 4788888743
No 398
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.42 E-value=1.8e-06 Score=89.29 Aligned_cols=118 Identities=24% Similarity=0.312 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCEEEEEcccCC
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAG--L-QDHIRLYLCDYRQ 676 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~g--l-~~~v~~~~~D~~~ 676 (850)
.+++.++.-..+.+| .+||-||-|-|+.++.+.++ .-.+++.|||+++.++.+++.+.... . ..+++++..|..+
T Consensus 63 hEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~ 141 (282)
T COG0421 63 HEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE 141 (282)
T ss_pred HHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH
Confidence 344444444444555 69999999999999999998 34799999999999999999876532 2 3689999999766
Q ss_pred CC--CCCCccEEEEecchhhhCh-h--hHHHHHHHHHhccccCeEEEEE
Q 038410 677 MP--EVKKYDTIISCEMIENVGH-E--YIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 677 ~~--~~~~fD~v~s~~~~~~~~~-~--~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
.- ...+||+|+.-..=. +|. + .-..|++.|++.|+|+|.++.+
T Consensus 142 ~v~~~~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 142 FLRDCEEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHhCCCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 54 334899999875433 332 0 1278999999999999999997
No 399
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.42 E-value=1.9e-06 Score=87.38 Aligned_cols=147 Identities=21% Similarity=0.207 Sum_probs=93.4
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC---------------------------CC
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQ---------------------------DH 666 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~---------------------------~~ 666 (850)
..|.++||||||.=-.-..-|...--+++..|.++.-.+..++.++..+-- ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 457899999999855433333333457999999999888777766543210 12
Q ss_pred E-EEEEcccCCCC---C----CCCccEEEEecchhhhCh--hhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCcc
Q 038410 667 I-RLYLCDYRQMP---E----VKKYDTIISCEMIENVGH--EYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSP 736 (850)
Q Consensus 667 v-~~~~~D~~~~~---~----~~~fD~v~s~~~~~~~~~--~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~ 736 (850)
| .++.+|..+.+ + +.+||.|+|...+|.+.. +.+...++++.++|||||.+++....... .|
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t-~Y------- 206 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST-YY------- 206 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S-EE-------
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce-eE-------
Confidence 4 47889987755 2 135999999999999853 35777899999999999999997664321 11
Q ss_pred ccccccccCCCCCCCHHHHHHHHhcCCceEEEEee
Q 038410 737 GFITEYVFPGGCLPSLNRITSAMTSSSRLCVEHLE 771 (850)
Q Consensus 737 ~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~ 771 (850)
..-..-||. ...+.+.+.+++.+ +||.+++.+
T Consensus 207 -~vG~~~F~~-l~l~ee~v~~al~~-aG~~i~~~~ 238 (256)
T PF01234_consen 207 -MVGGHKFPC-LPLNEEFVREALEE-AGFDIEDLE 238 (256)
T ss_dssp -EETTEEEE----B-HHHHHHHHHH-TTEEEEEEE
T ss_pred -EECCEeccc-ccCCHHHHHHHHHH-cCCEEEecc
Confidence 011112332 22356677777775 799999887
No 400
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.41 E-value=3.8e-06 Score=97.08 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhcc-CceEeeCCceEEEEecC--Cce-EEEe-eCCc--EEeCCEEEEecChH
Q 038410 212 HSQIDKVSEQLKSW-GIQIRMSCEVYSVFPAD--EGC-SIVC-VNGS--QEFYNGCVMAVHAP 267 (850)
Q Consensus 212 ~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~--~~v-~V~~-~~G~--~i~ad~VV~A~p~~ 267 (850)
..+++.|.+.+.++ |++|+++++|+++..++ ++| .|.. .+|. .+.|+.||+||+..
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 46888888888654 89999999999998763 444 3432 3554 37899999999874
No 401
>PRK13748 putative mercuric reductase; Provisional
Probab=98.41 E-value=4.9e-06 Score=97.54 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecCh
Q 038410 211 SHSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHA 266 (850)
Q Consensus 211 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~ 266 (850)
...+.+.+.+.+++.|++|++++.|++|+.+++.+.+.+.++ ++.+|.||+|++.
T Consensus 309 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~ 363 (561)
T PRK13748 309 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGR 363 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCC
Confidence 356778888899999999999999999998777777777666 5999999999985
No 402
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.41 E-value=2.5e-06 Score=91.74 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhcc-CceEeeCCceEEEEecCCc-eEEEee-----CCcEEeCCEEEEecChHHHHHh
Q 038410 212 HSQIDKVSEQLKSW-GIQIRMSCEVYSVFPADEG-CSIVCV-----NGSQEFYNGCVMAVHAPDALRI 272 (850)
Q Consensus 212 ~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~-v~V~~~-----~G~~i~ad~VV~A~p~~~~~~l 272 (850)
+.|++.|.+.+.+. |+++++|++|+.|++.+++ |.|++. +..++.|+.|++.++..++.-+
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL 248 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLL 248 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence 68999999999888 8999999999999999777 888763 2357999999999998866443
No 403
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.40 E-value=1.1e-05 Score=82.48 Aligned_cols=142 Identities=23% Similarity=0.286 Sum_probs=101.1
Q ss_pred CCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH---c------------------------------
Q 038410 615 KGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKE---A------------------------------ 661 (850)
Q Consensus 615 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~---~------------------------------ 661 (850)
...+||--|||-|+++..+|++ |..+.|.|.|--|+-..+-.+.. .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 3579999999999999999998 99999999999886554432221 0
Q ss_pred ------CCCCCEEEEEcccCCCC-CC---CCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCCCcCCC
Q 038410 662 ------GLQDHIRLYLCDYRQMP-EV---KKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDG 731 (850)
Q Consensus 662 ------gl~~~v~~~~~D~~~~~-~~---~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~ 731 (850)
..++++....+|+.++. ++ ++||.|++++.+... +|+-.|++.|+++|||||..+-.-+ -.|..
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN~GP----Llyh~ 208 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWINFGP----LLYHF 208 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEecCC----ccccC
Confidence 01235777788887776 33 799999999888877 6799999999999999996664221 11111
Q ss_pred CcCccccccccccCC--CCCCCHHHHHHHHhcCCceEEEEeee
Q 038410 732 HRLSPGFITEYVFPG--GCLPSLNRITSAMTSSSRLCVEHLEN 772 (850)
Q Consensus 732 ~~~~~~~~~~~i~p~--~~~~~~~~~~~~~~~~~gf~v~~~~~ 772 (850)
... . .|+ .--.+.+++...+.. .||+++..+.
T Consensus 209 ~~~-------~-~~~~~sveLs~eEi~~l~~~-~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EPM-------S-IPNEMSVELSLEEIKELIEK-LGFEIEKEES 242 (270)
T ss_pred CCC-------C-CCCCcccCCCHHHHHHHHHH-CCCEEEEEEE
Confidence 100 0 000 123578899877775 7999987765
No 404
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.40 E-value=2.1e-05 Score=79.91 Aligned_cols=61 Identities=13% Similarity=-0.048 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEeeCCc--EEeCCEEEEecChHHHHHhh
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCVNGS--QEFYNGCVMAVHAPDALRIL 273 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~--~i~ad~VV~A~p~~~~~~ll 273 (850)
++-++|.+.+++.|+.+..+.+|.+.+..+++| .|.|.++. .+++|.+|+|++.....-|.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLv 322 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLV 322 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccch
Confidence 678889999999999999999999999999998 47777664 46799999999986554443
No 405
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.7e-06 Score=91.36 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=41.2
Q ss_pred HHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChHH
Q 038410 214 QIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 214 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
+.+.+.+.+..-|.++.. ..|.+++..++...|+|.+|. ++|+.||+|++...
T Consensus 63 L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 63 LMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcc
Confidence 444555555555777766 788888887767789999997 99999999999753
No 406
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=3.5e-06 Score=98.41 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecC----Cce-EEEe---eCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPAD----EGC-SIVC---VNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~----~~v-~V~~---~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+.+.|.+.+.+.|++|+.++.|++|..++ +++ .|.. .+|+ .+.|+.||+||+...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 4688889998888899999999999998765 454 3432 3554 578999999998764
No 407
>PTZ00367 squalene epoxidase; Provisional
Probab=98.40 E-value=2.2e-06 Score=98.58 Aligned_cols=60 Identities=28% Similarity=0.423 Sum_probs=44.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCcc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMG 76 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~ 76 (850)
||+|||||++|+++|+.|+++|++|+|+|++...-- .+. .|. .-.++..+.++++|+...
T Consensus 35 dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~----~r~------~G~-----~L~p~g~~~L~~LGL~d~ 94 (567)
T PTZ00367 35 DVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKP----DRI------VGE-----LLQPGGVNALKELGMEEC 94 (567)
T ss_pred cEEEECCCHHHHHHHHHHHhcCCEEEEEcccccccc----chh------hhh-----hcCHHHHHHHHHCCChhh
Confidence 899999999999999999999999999999641000 000 111 235677899999998653
No 408
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.39 E-value=5.4e-06 Score=96.61 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcc-CceEeeCCceEEEEecCCceE-E---EeeCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGCS-I---VCVNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~-V---~~~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+.+.|.+.+.+. +++++.++.|+++..+++++. | ...+|+ .+.|+.||+|++...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 35778888777664 789999999999998777653 2 334663 678999999998754
No 409
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=3.8e-06 Score=81.53 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=94.2
Q ss_pred HHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC-C-
Q 038410 603 KVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM-P- 678 (850)
Q Consensus 603 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~-~- 678 (850)
.++.+++. -.++++||||.=+|.-++..|.. .+.+|+++|++++..+.+.+..+.+|+.++|++++++..+. +
T Consensus 64 fl~~li~~---~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 64 FLQMLIRL---LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHH---hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence 34444444 45679999999888888888877 67899999999999999999999999999999999996543 1
Q ss_pred -----CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCCC
Q 038410 679 -----EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPD 726 (850)
Q Consensus 679 -----~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~ 726 (850)
..++||.++.- |-. +++..++.++.++||+||.+++.....+.
T Consensus 141 l~~~~~~~tfDfaFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 141 LLADGESGTFDFAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HHhcCCCCceeEEEEc----cch-HHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 45899999864 444 35669999999999999999996644443
No 410
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.39 E-value=3.1e-06 Score=99.12 Aligned_cols=56 Identities=11% Similarity=-0.053 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhccC-ceEeeCCceEEEEecCCce-EE---EeeCCc--EEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWG-IQIRMSCEVYSVFPADEGC-SI---VCVNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v-~V---~~~~G~--~i~ad~VV~A~p~~~ 268 (850)
.+.+.|.+.++++| ++|+.+++|++|..+++++ .| .+.+|+ .+.|+.||+|++...
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 57777877787765 9999999999998776664 33 233554 688999999999764
No 411
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.39 E-value=4.8e-07 Score=84.95 Aligned_cols=73 Identities=21% Similarity=0.343 Sum_probs=56.8
Q ss_pred eEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCC----CCCccEEEEecc
Q 038410 618 DVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPE----VKKYDTIISCEM 691 (850)
Q Consensus 618 ~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~----~~~fD~v~s~~~ 691 (850)
.|+|+.||.|+.++.+|+. ..+|++||+++..++.|+.+++-.|+.++|+++++|+.++.. ...||+|+....
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 6999999999999999997 789999999999999999999999999999999999877641 122899998743
No 412
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.38 E-value=8.5e-06 Score=94.65 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEee-CCc--EEeCC-EEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCV-NGS--QEFYN-GCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~-~G~--~i~ad-~VV~A~p~~~ 268 (850)
..+...|.+.+++.|++|+++++|++|..++++| .|... +|+ .+.|+ .||+|++...
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~ 269 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFE 269 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence 4688888899999999999999999999877765 34433 453 47786 6999998653
No 413
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.37 E-value=6.2e-06 Score=88.28 Aligned_cols=60 Identities=15% Similarity=0.092 Sum_probs=40.8
Q ss_pred HHHHHHHhhccCceEeeCCceEEEEec--CCc---eEEEeeCCc----EEeCCEEEEecChHHHHHhhc
Q 038410 215 IDKVSEQLKSWGIQIRMSCEVYSVFPA--DEG---CSIVCVNGS----QEFYNGCVMAVHAPDALRILG 274 (850)
Q Consensus 215 ~~~L~~~l~~~G~~i~~~~~V~~I~~~--~~~---v~V~~~~G~----~i~ad~VV~A~p~~~~~~ll~ 274 (850)
...|..++...+.+|++++.|++|..+ +++ |.+...++. .+.++.||+|+++-...+||-
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl 264 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLL 264 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHH
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhc
Confidence 334555555558999999999999664 444 333444444 456899999999877777663
No 414
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.37 E-value=4.4e-06 Score=96.19 Aligned_cols=36 Identities=42% Similarity=0.734 Sum_probs=34.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
||+||||| +||+||+++++.|.+|+|||+....||.
T Consensus 9 DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~ 44 (513)
T PRK12837 9 DVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGT 44 (513)
T ss_pred CEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 89999999 9999999999999999999999888884
No 415
>PRK14727 putative mercuric reductase; Provisional
Probab=98.37 E-value=7.3e-06 Score=93.70 Aligned_cols=55 Identities=11% Similarity=0.075 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
..+.+.+.+.+++.|++++++++|++|+.+++++.|.+.++ ++.+|.||+|++..
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCC
Confidence 45777888889999999999999999998777777777666 58999999999863
No 416
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.37 E-value=6.8e-06 Score=94.36 Aligned_cols=56 Identities=11% Similarity=0.192 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCce-EEEee--CCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCV--NGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~--~G~--~i~ad~VV~A~p~~~ 268 (850)
..+.+.|.+.+. .|++|+.+++|++|..+++++ .|... +|+ .+.|+.||+|++...
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 357888888776 589999999999998777664 34443 343 578999999998754
No 417
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=7.3e-06 Score=95.70 Aligned_cols=36 Identities=36% Similarity=0.589 Sum_probs=34.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (850)
||+|||||+|||+||..++++|.+|+|+||....||
T Consensus 5 DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 5 KVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred cEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 899999999999999999999999999999887766
No 418
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.36 E-value=4.9e-06 Score=88.03 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=95.3
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCC-----------------------------------------EEE
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGC-----------------------------------------KYT 642 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-----------------------------------------~v~ 642 (850)
...|+...+.+++..++|-=||+|.+++.+|.. +. .++
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~-~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALI-AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHh-ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 346677778888999999999999999999876 21 377
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCC-CCccEEEEecchh-hhChh-----hHHHHHHHHHhccccCe
Q 038410 643 GITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEV-KKYDTIISCEMIE-NVGHE-----YIEEFFGCCESLLAEHG 715 (850)
Q Consensus 643 gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~-~~fD~v~s~~~~~-~~~~~-----~~~~~~~~~~r~LkpgG 715 (850)
|+|+++.+++.|+.+++++|+.+.|+|.++|+.++++. +.+|+|||+.... -++.+ -+..+.+.+++.++--+
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999844 8999999996542 12221 35667777888888878
Q ss_pred EEEEEE
Q 038410 716 LLLLQF 721 (850)
Q Consensus 716 ~~~~~~ 721 (850)
+.++.+
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 888743
No 419
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.36 E-value=1e-05 Score=92.84 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|+++++++.|++|+..++.+.|++.+|+++.+|.||+|++.
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 276 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGR 276 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCC
Confidence 3567788889999999999999999998776667787778888999999999875
No 420
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.36 E-value=4.7e-06 Score=83.99 Aligned_cols=37 Identities=43% Similarity=0.730 Sum_probs=34.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
.|||||+|+|||+|+-.|...|-.|+++|++..+||.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 3899999999999999999998889999999999995
No 421
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.36 E-value=3.2e-07 Score=99.11 Aligned_cols=115 Identities=13% Similarity=0.239 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCC--CCC--CeEEEEccCccHHHHHHHHhcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCCEEEEEcc
Q 038410 601 MRKVSLLIEKARV--NKG--LDVLEIGCGWGTLAIEIVKQTGCKYTGI---TLSEEQLKYTETKVKEAGLQDHIRLYLCD 673 (850)
Q Consensus 601 ~~~~~~~~~~l~~--~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gi---d~s~~~~~~a~~~~~~~gl~~~v~~~~~D 673 (850)
...++.|.+.+.+ ..| ..+||||||.|.|+.++.++ +..+..+ |..+.|+++|-+| |++.-+. ..-
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~--~~~ 171 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVPAMIG--VLG 171 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccchhhh--hhc
Confidence 4455666666655 333 36899999999999999998 6555444 3344677777766 6643222 222
Q ss_pred cCCCC-CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEec
Q 038410 674 YRQMP-EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 674 ~~~~~-~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
-..+| +++.||.|.|...+-..... -.-++-++.|+|+|||+++++...
T Consensus 172 s~rLPfp~~~fDmvHcsrc~i~W~~~-~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 172 SQRLPFPSNAFDMVHCSRCLIPWHPN-DGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cccccCCccchhhhhcccccccchhc-ccceeehhhhhhccCceEEecCCc
Confidence 35677 88999999998766544332 246899999999999999996553
No 422
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.35 E-value=1.2e-06 Score=94.23 Aligned_cols=121 Identities=20% Similarity=0.264 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh--------cCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-EEEEEc
Q 038410 602 RKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--------TGCKYTGITLSEEQLKYTETKVKEAGLQDH-IRLYLC 672 (850)
Q Consensus 602 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--------~~~~v~gid~s~~~~~~a~~~~~~~gl~~~-v~~~~~ 672 (850)
...+.|++.+...++.+|||-.||+|++...+.+. ...+++|+|+++.++..|+-++.-.+.... ..+...
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 44567778888888999999999999999888772 478999999999999999988766665433 468888
Q ss_pred ccCCCC-C--CCCccEEEEecchhhh--Ch-----------------hhHHHHHHHHHhccccCeEEEEEEe
Q 038410 673 DYRQMP-E--VKKYDTIISCEMIENV--GH-----------------EYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 673 D~~~~~-~--~~~fD~v~s~~~~~~~--~~-----------------~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
|....+ . .++||+|+++..+.-. .. ..--.++..+.+.||+||++.+...
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 865544 2 4789999999755433 10 0112488999999999999877544
No 423
>PLN02815 L-aspartate oxidase
Probab=98.35 E-value=4.3e-06 Score=97.04 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=33.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (850)
||+|||||+|||+||+.+++.| +|+|+||....||
T Consensus 31 DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 31 DFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred CEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 8999999999999999999999 9999999888887
No 424
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.34 E-value=2.1e-06 Score=99.75 Aligned_cols=37 Identities=32% Similarity=0.681 Sum_probs=34.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
.||+|||||+|||+||..|+++|++|+|+|+ ...||.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~ 41 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQ 41 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCce
Confidence 3899999999999999999999999999999 477874
No 425
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.33 E-value=2.3e-06 Score=97.32 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCc-eEEEeeCCcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-CSIVCVNGSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.++++|+++++++.|++|+..+++ ..|++.+|+++.+|.||+|++.
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 567888899999999999999999999876554 5677777888999999999984
No 426
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.33 E-value=3.5e-06 Score=99.03 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=45.8
Q ss_pred CcEEEECCChHHHHHHHHHHh-CCCeEEEEecCCCC--CCcceEEeeCCeeeecceeeccCCCchHHHHHHHHcCCCccc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAK-AGVEVVLYEKEDSL--GGHAKTVTIDGVDLDIGFMLFNHVEYPNMMEFLESLGVDMGT 77 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~-~G~~V~VlEa~~~~--GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~l~~~lgl~~~~ 77 (850)
.||+|||||++||++|..|++ .|++|+|+|+++.. .|++ . .-.+...++++++|+....
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA--------------~----gl~prtleiL~~lGl~d~l 94 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQA--------------D----GIACRTMEMFQAFGFAERI 94 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCee--------------e----EEChHHHHHHHhccchHHH
Confidence 389999999999999999999 59999999996532 1211 1 1246788999999986543
No 427
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=4.2e-06 Score=82.32 Aligned_cols=97 Identities=24% Similarity=0.331 Sum_probs=85.3
Q ss_pred CCeEEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCC-ccEEEEecchh
Q 038410 616 GLDVLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKK-YDTIISCEMIE 693 (850)
Q Consensus 616 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~-fD~v~s~~~~~ 693 (850)
+.+++|||+|.|..++.+|-. ++.+||-+|....-+.+.++...+.+++ +++++++.++++..+.. ||+|+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccccccCcEEEeehc--
Confidence 689999999999999998844 7889999999999999999999999997 79999999999984444 999999854
Q ss_pred hhChhhHHHHHHHHHhccccCeEEEE
Q 038410 694 NVGHEYIEEFFGCCESLLAEHGLLLL 719 (850)
Q Consensus 694 ~~~~~~~~~~~~~~~r~LkpgG~~~~ 719 (850)
..+..+++-+..++|+||.++.
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchh
Confidence 3467889999999999999875
No 428
>PRK08275 putative oxidoreductase; Provisional
Probab=98.31 E-value=3.6e-06 Score=97.81 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEec-CCce-EEE---eeCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPA-DEGC-SIV---CVNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~---~~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+.+.|.+.+++.|++|+.++.|++|..+ ++++ .|. ..+|+ .+.|+.||+|++...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 367888888888889999999999999886 5554 333 33564 478999999998753
No 429
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.30 E-value=9e-06 Score=94.56 Aligned_cols=57 Identities=11% Similarity=0.097 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcc-CceEeeCCceEEEEecCCceE-E---EeeCCc--EEeCCEEEEecChHH
Q 038410 212 HSQIDKVSEQLKSW-GIQIRMSCEVYSVFPADEGCS-I---VCVNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 212 ~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~-V---~~~~G~--~i~ad~VV~A~p~~~ 268 (850)
..+.+.|.+.+.+. +++++.++.|+++..++++|. | ...+|+ .+.|+.||+|++...
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 46888888877664 789999999999998777653 3 234663 678999999998754
No 430
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.30 E-value=6.6e-06 Score=97.65 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=89.6
Q ss_pred HHHHHHcCC-CCCCeEEEEccCccHHHHHHHHh-----c--------------------------------------CCE
Q 038410 605 SLLIEKARV-NKGLDVLEIGCGWGTLAIEIVKQ-----T--------------------------------------GCK 640 (850)
Q Consensus 605 ~~~~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-----~--------------------------------------~~~ 640 (850)
..|+...+. +++..++|-.||+|.+.+.+|.. | ..+
T Consensus 179 aa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~ 258 (702)
T PRK11783 179 AAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSK 258 (702)
T ss_pred HHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCce
Confidence 456666666 67889999999999999998762 1 137
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-C--CCCccEEEEecchhh-hCh-hhHHHHHHHHHhccc---
Q 038410 641 YTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-E--VKKYDTIISCEMIEN-VGH-EYIEEFFGCCESLLA--- 712 (850)
Q Consensus 641 v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~--~~~fD~v~s~~~~~~-~~~-~~~~~~~~~~~r~Lk--- 712 (850)
++|+|+++++++.|++++..+|+.+.+++.++|+.+++ + .++||+|+++..+.. ++. .+...+++.+.+.||
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~ 338 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQF 338 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999989999999999886 2 357999999976532 222 234445455444444
Q ss_pred cCeEEEEEE
Q 038410 713 EHGLLLLQF 721 (850)
Q Consensus 713 pgG~~~~~~ 721 (850)
||+++++.+
T Consensus 339 ~g~~~~llt 347 (702)
T PRK11783 339 GGWNAALFS 347 (702)
T ss_pred CCCeEEEEe
Confidence 898887744
No 431
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.3e-06 Score=88.11 Aligned_cols=249 Identities=17% Similarity=0.214 Sum_probs=139.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEee-------C----------C----eeeecceeeccCCC
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTI-------D----------G----VDLDIGFMLFNHVE 60 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-------~----------G----~~~d~G~~~~~~~~ 60 (850)
||+|+|-|+.=...+..|+..|.+|+.+|+++.-||-.+|... + | +-+|+=+..+ ..
T Consensus 6 DvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~l--mA 83 (440)
T KOG1439|consen 6 DVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFL--MA 83 (440)
T ss_pred eEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhh--hc
Confidence 8999999999999999999999999999999999997666542 1 1 2333333333 23
Q ss_pred chHHHHHHHHcCCCccc--ccceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcC
Q 038410 61 YPNMMEFLESLGVDMGT--SDMSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELEN 138 (850)
Q Consensus 61 ~~~~~~l~~~lgl~~~~--~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (850)
...+.+++-+.|+..-. ...+-...+.+|+.+..+.. ... .+ ..+++.-.- -+...+|..-...+.+....
T Consensus 84 n~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t-~~E-a~--~s~lmgl~e---Krr~~kFl~~V~n~~e~~~~ 156 (440)
T KOG1439|consen 84 NGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPAT-EAE-AL--TSPLMGLFE---KRRVMKFLKFVLNYDEEDPK 156 (440)
T ss_pred cchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCC-HHH-Hh--cCCccchhH---HHHHHHHHHHHhhhhhhccc
Confidence 44556666666665432 22233344455555444331 000 00 001111000 11222222222222221111
Q ss_pred C-CCCC-CCCcHHHHHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHH----HHHHHHHHhhhcCCCcEEEecCChH
Q 038410 139 S-PDID-RNETLGHFIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAF----SVLSFCRLFQLFGHPQCVTVRRHSH 212 (850)
Q Consensus 139 ~-~~~~-~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~~gG~~ 212 (850)
. ...+ ...++.+++...+......+..... ..++..+ ...+.|+. -+..|+..+..++.....+|..|.+
T Consensus 157 ~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~--~al~~dd--~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yGlg 232 (440)
T KOG1439|consen 157 TWQGYDLSKDTMREFLGKFGLLEGTIDFIGHA--IALLCDD--SYLDQPAKETLERILLYVRSFARYGKSPYLYPLYGLG 232 (440)
T ss_pred cccccccccchHHHHHHHhcccccceeeeeee--eEEEecc--hhccCccHHHHHHHHHHHHHHhhcCCCcceecccCcc
Confidence 1 1111 2448888888887665543321111 1111111 11122332 2334455666677777889999999
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCCce--EEEeeCCcEEeCCEEEEec
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGC--SIVCVNGSQEFYNGCVMAV 264 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v--~V~~~~G~~i~ad~VV~A~ 264 (850)
.+++.+++...=.|++..+|.++.+|....++. +|... ++...+..||+-.
T Consensus 233 EL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~-~~v~~~k~vi~dp 285 (440)
T KOG1439|consen 233 ELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSG-GEVAKCKKVICDP 285 (440)
T ss_pred hhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecC-CceeecceEEecC
Confidence 999999997777799999999999999954453 44433 3346677666543
No 432
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.30 E-value=8.8e-06 Score=100.68 Aligned_cols=40 Identities=35% Similarity=0.589 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (850)
+||+|||||+|||+||..|++.|++|+|+|+++.+||.+.
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~ 203 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLL 203 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeee
Confidence 4899999999999999999999999999999999999654
No 433
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.30 E-value=3.9e-06 Score=86.13 Aligned_cols=109 Identities=26% Similarity=0.320 Sum_probs=81.7
Q ss_pred CCCCeEEEEccCccHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCCEEEEEcccCCCC--CCC-CccEE
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYTETKVKEAGL---QDHIRLYLCDYRQMP--EVK-KYDTI 686 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~gl---~~~v~~~~~D~~~~~--~~~-~fD~v 686 (850)
+...+||-||-|.|+.+..+.+.+ ..+|+.|||+++.++.|++....... .++++++..|....- ..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 357799999999999999999884 46999999999999999998764321 358999999976543 224 89999
Q ss_pred EEecchhhhChh--hHHHHHHHHHhccccCeEEEEEEe
Q 038410 687 ISCEMIENVGHE--YIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 687 ~s~~~~~~~~~~--~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
+.-..-..-+.. .-..+++.+++.|+|||.++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 986433211111 236899999999999999999773
No 434
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=3.6e-06 Score=95.77 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCC--cEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNG--SQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G--~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.+++.|++|++++.|++|+.+++.+.+.. +| .++.||.||+|++.
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCC
Confidence 46777888889999999999999999987666555543 34 36899999999984
No 435
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.28 E-value=3.8e-06 Score=82.98 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCE-EEEEeCCHHHHHHHHHHHH-------HcCC-CCCEEEEEc
Q 038410 602 RKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCK-YTGITLSEEQLKYTETKVK-------EAGL-QDHIRLYLC 672 (850)
Q Consensus 602 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~-v~gid~s~~~~~~a~~~~~-------~~gl-~~~v~~~~~ 672 (850)
..+..+++++++++++..+|||||.|.....+|-..+++ ++||++.+...+.|++..+ ..|. ..++++.++
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 345678899999999999999999999999888776776 9999999999888875433 2233 347888999
Q ss_pred ccCCCC----CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEE
Q 038410 673 DYRQMP----EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLL 719 (850)
Q Consensus 673 D~~~~~----~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~ 719 (850)
|+.+.+ .-..-|+|+++... ++ +.....+.+....||||-+++-
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CccccHhHhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 987643 11356999998764 23 2356667888888999988764
No 436
>PLN02546 glutathione reductase
Probab=98.28 E-value=2e-05 Score=90.83 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCc-eEEEeeCCcEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-CSIVCVNGSQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.++++|+++++++.|++|+..+++ +.|.+.+++...+|.||++++.
T Consensus 293 ~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~ 348 (558)
T PLN02546 293 EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGR 348 (558)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecc
Confidence 455667778888899999999999999875444 6666666654458999999874
No 437
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.28 E-value=1.3e-05 Score=91.45 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCC-ceEEEeeCC--cEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADE-GCSIVCVNG--SQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G--~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.++++ ++|+++++|++|+.+++ ++.++..+| +++.+|.||+|++.
T Consensus 210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 210 PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCC
Confidence 45677788888888 99999999999987654 455543333 46899999999875
No 438
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=9.6e-06 Score=80.16 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=89.7
Q ss_pred HHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---
Q 038410 604 VSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--- 678 (850)
Q Consensus 604 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--- 678 (850)
+..|+.+|.++||.+|||-|.|+|+++.++++. +-.+++..|..+.-.+.|.+-.++.|+++++++.+.|.....
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 468899999999999999999999999999998 667999999999999999999999999999999999987655
Q ss_pred CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCe-EEEE
Q 038410 679 EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHG-LLLL 719 (850)
Q Consensus 679 ~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG-~~~~ 719 (850)
.+..+|.|+.--.-.| ..+-.++..||.+| +++.
T Consensus 174 ks~~aDaVFLDlPaPw-------~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 174 KSLKADAVFLDLPAPW-------EAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cccccceEEEcCCChh-------hhhhhhHHHhhhcCceEEe
Confidence 3578999987643222 23334555788776 4443
No 439
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.27 E-value=7.9e-06 Score=93.11 Aligned_cols=37 Identities=41% Similarity=0.766 Sum_probs=34.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
|||+|||||.+|++||..|++.|.+|+|+|++ .+||.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~ 38 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGA 38 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCc
Confidence 69999999999999999999999999999985 58884
No 440
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.27 E-value=4.6e-06 Score=94.63 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhcc-CceEeeCCceEEEEec-CCc-eEEEeeCCcEEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSW-GIQIRMSCEVYSVFPA-DEG-CSIVCVNGSQEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~-~~~-v~V~~~~G~~i~ad~VV~A~p~~~ 268 (850)
.+...|.+.+++. +++++ ...|+.+..+ +++ +.|.+.+|..+.|+.||+|++.+.
T Consensus 97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 4566677777776 56775 5578888765 455 478888998899999999999884
No 441
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.27 E-value=1.8e-05 Score=75.53 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=90.2
Q ss_pred HHHHHHcCC--CCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC----C
Q 038410 605 SLLIEKARV--NKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM----P 678 (850)
Q Consensus 605 ~~~~~~l~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~----~ 678 (850)
+.+...+.. -.|.++||+-+|+|.+++.++.+...+++.||.+.+.+...+++++..++..+++++..|.... .
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~ 110 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG 110 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC
Confidence 345555543 4789999999999999999999955689999999999999999999999888999999997743 2
Q ss_pred CCCCccEEEEecchhhhChhhHHHHHHH--HHhccccCeEEEEEEe
Q 038410 679 EVKKYDTIISCEMIENVGHEYIEEFFGC--CESLLAEHGLLLLQFS 722 (850)
Q Consensus 679 ~~~~fD~v~s~~~~~~~~~~~~~~~~~~--~~r~LkpgG~~~~~~~ 722 (850)
..++||+|+.-..++. +--+....+.. -..+|+|+|.+++..-
T Consensus 111 ~~~~FDlVflDPPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 111 TREPFDLVFLDPPYAK-GLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCcccEEEeCCCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 2235999999988872 11111222333 4578999999999654
No 442
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.27 E-value=1.3e-05 Score=84.63 Aligned_cols=143 Identities=19% Similarity=0.224 Sum_probs=100.1
Q ss_pred cC-CChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHh-----cCCE
Q 038410 567 YD-VSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-----TGCK 640 (850)
Q Consensus 567 Yd-~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-----~~~~ 640 (850)
|| .+...|.... ....||...++ .+--++....|.+.+ .++..|+|+|||.|.=+..+.+. ..++
T Consensus 36 YD~~Gs~LFe~It-----~lpEYYptr~E--~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~ 106 (319)
T TIGR03439 36 YDDEGLKLFEEIT-----YSPEYYLTNDE--IEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVD 106 (319)
T ss_pred hcchHHHHHHHHH-----cCCccCChHHH--HHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCce
Confidence 54 3556666543 33455543221 111233345566654 57779999999999887766554 2478
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCCEEE--EEcccCCC----CC---CCCccEEEEec-chhhhChhhHHHHHHHHHh-
Q 038410 641 YTGITLSEEQLKYTETKVKEAGLQDHIRL--YLCDYRQM----PE---VKKYDTIISCE-MIENVGHEYIEEFFGCCES- 709 (850)
Q Consensus 641 v~gid~s~~~~~~a~~~~~~~gl~~~v~~--~~~D~~~~----~~---~~~fD~v~s~~-~~~~~~~~~~~~~~~~~~r- 709 (850)
+++||+|.++++.+.+++.....+ .+++ +++||.+. +. .....+|+..+ +|.++.++.-..+++++++
T Consensus 107 Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~ 185 (319)
T TIGR03439 107 YYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLAT 185 (319)
T ss_pred EEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHh
Confidence 999999999999999998743443 4555 89998663 21 23467777775 8999988888899999999
Q ss_pred ccccCeEEEE
Q 038410 710 LLAEHGLLLL 719 (850)
Q Consensus 710 ~LkpgG~~~~ 719 (850)
.|+|||.+++
T Consensus 186 ~l~~~d~lLi 195 (319)
T TIGR03439 186 ALSPSDSFLI 195 (319)
T ss_pred hCCCCCEEEE
Confidence 9999999988
No 443
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.26 E-value=1.1e-05 Score=67.21 Aligned_cols=35 Identities=51% Similarity=0.692 Sum_probs=31.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCC
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLG 36 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~G 36 (850)
+|+|||||+.|+-+|..|++.|.+|+|+|+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999965533
No 444
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=6.6e-06 Score=90.66 Aligned_cols=117 Identities=16% Similarity=0.255 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC
Q 038410 598 VAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM 677 (850)
Q Consensus 598 ~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~ 677 (850)
.....+++..++.++..++++|||+=||.|.+++.+|++ ..+|+|+|+++++++.|+++++.+++. |++|..+|.+++
T Consensus 276 ~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~ 353 (432)
T COG2265 276 AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHH
Confidence 344567788899999889999999999999999999986 889999999999999999999999997 499999999887
Q ss_pred CC----CCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 678 PE----VKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 678 ~~----~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
.. ...||.|+....=.-.+ +.+++.+.+ ++|-..+++++
T Consensus 354 ~~~~~~~~~~d~VvvDPPR~G~~----~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPPRAGAD----REVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred hhhccccCCCCEEEECCCCCCCC----HHHHHHHHh-cCCCcEEEEeC
Confidence 62 25789999864322221 255555555 47777777743
No 445
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.23 E-value=8.1e-06 Score=102.48 Aligned_cols=37 Identities=49% Similarity=0.827 Sum_probs=35.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
||+|||||.|||+||...++.|.+|+||||....||.
T Consensus 411 DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 8999999999999999999999999999999999994
No 446
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.21 E-value=1.7e-05 Score=85.77 Aligned_cols=113 Identities=16% Similarity=0.226 Sum_probs=83.3
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHHHhhhcCCCcEEEecCChHHHHHHHHHHhhc
Q 038410 145 NETLGHFIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCRLFQLFGHPQCVTVRRHSHSQIDKVSEQLKS 224 (850)
Q Consensus 145 ~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~ 224 (850)
..+..+||.+.|+++.+.+.++.+.++..|+.+. ++ ++.. ....+.. ..++.+.++||+.++++.|.+.-
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i---~a~~--G~vSla~--a~~gl~sV~GGN~qI~~~ll~~S-- 138 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQNV-NI---HAFA--GLVSLAG--ATGGLWSVEGGNWQIFEGLLEAS-- 138 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-ch---hhhh--hheeeee--ccCCceEecCCHHHHHHHHHHHc--
Confidence 4678999999999999999999999999999753 34 2211 1111221 24677899999999999999875
Q ss_pred cCceEeeCCceEEE-EecCCc---eEEEeeCC---cEEeCCEEEEecChHHH
Q 038410 225 WGIQIRMSCEVYSV-FPADEG---CSIVCVNG---SQEFYNGCVMAVHAPDA 269 (850)
Q Consensus 225 ~G~~i~~~~~V~~I-~~~~~~---v~V~~~~G---~~i~ad~VV~A~p~~~~ 269 (850)
|+++ +|++|++| ...+++ +.|++.++ ....+|.||+|+|....
T Consensus 139 -~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 139 -GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred -cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 8899 99999999 444444 45655542 23457999999999543
No 447
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.21 E-value=2.5e-05 Score=77.23 Aligned_cols=100 Identities=25% Similarity=0.314 Sum_probs=74.6
Q ss_pred EEEEccCccHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEccc-CCCCCCCCccEEEEecchhhhC
Q 038410 619 VLEIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDY-RQMPEVKKYDTIISCEMIENVG 696 (850)
Q Consensus 619 vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~-~~~~~~~~fD~v~s~~~~~~~~ 696 (850)
|.||||-.|.+.++|.++ .--+++++|+++.-++.|+++++..|+.++|+++++|- ..+++.+..|.|+..+|=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 689999999999999998 22379999999999999999999999999999999995 44554444899999987443
Q ss_pred hhhHHHHHHHHHhccccCeEEEEEEe
Q 038410 697 HEYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 697 ~~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
-...++++....++..-.++++..
T Consensus 79 --lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 79 --LIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp --HHHHHHHHTGGGGTT--EEEEEES
T ss_pred --HHHHHHHhhHHHhccCCeEEEeCC
Confidence 367888888887777677777543
No 448
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.21 E-value=3.2e-05 Score=88.20 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCC---cEEeCCEEEEecCh
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNG---SQEFYNGCVMAVHA 266 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~i~ad~VV~A~p~ 266 (850)
..+.+.+.+.++++|++|++++.|++|+..++++.|+..+| +++.+|.||+|++.
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence 46677888889999999999999999987766677766655 36899999999984
No 449
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=3.7e-05 Score=83.33 Aligned_cols=120 Identities=19% Similarity=0.253 Sum_probs=95.9
Q ss_pred HHHHHcCCCCCCeEEEEccCccHHHHHHHHh-c--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---C
Q 038410 606 LLIEKARVNKGLDVLEIGCGWGTLAIEIVKQ-T--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---E 679 (850)
Q Consensus 606 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---~ 679 (850)
.....|+.+||++|||...+.|+=+.++|+. . +..|+++|+|+.-++..++++++.|+. ++.+.+.|.+.++ +
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccccc
Confidence 4456788999999999999999999999988 2 467899999999999999999999997 5889999987654 2
Q ss_pred C-CCccEEEEe------cchhhhC-------h-------hhHHHHHHHHHhccccCeEEEEEEecCCC
Q 038410 680 V-KKYDTIISC------EMIENVG-------H-------EYIEEFFGCCESLLAEHGLLLLQFSSVPD 726 (850)
Q Consensus 680 ~-~~fD~v~s~------~~~~~~~-------~-------~~~~~~~~~~~r~LkpgG~~~~~~~~~~~ 726 (850)
. ++||.|+.- +++.-=+ . +...+++....++|||||+++.++.+...
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 2 359999954 3441111 0 12467899999999999999998887654
No 450
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.19 E-value=3.6e-05 Score=89.16 Aligned_cols=35 Identities=34% Similarity=0.429 Sum_probs=32.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (850)
||+|||+|+|||+||+.+++. .+|+|+||....||
T Consensus 10 DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 10 DVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred CEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 899999999999999999986 89999999888777
No 451
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.19 E-value=1.5e-05 Score=90.61 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=35.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (850)
.||+|||+|++|+++|+.|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 4899999999999999999999999999999888886
No 452
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.17 E-value=1.5e-06 Score=105.63 Aligned_cols=40 Identities=43% Similarity=0.723 Sum_probs=37.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (850)
|+|+|||||+|||+||++|+++|++|||+|+.+++||.+.
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 6899999999999999999999999999999999999654
No 453
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.16 E-value=8.4e-06 Score=84.33 Aligned_cols=71 Identities=32% Similarity=0.423 Sum_probs=51.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeCCeeeecceeeccCCCchHHHH-HHHHcCCCcc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTIDGVDLDIGFMLFNHVEYPNMME-FLESLGVDMG 76 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~G~~~d~G~~~~~~~~~~~~~~-l~~~lgl~~~ 76 (850)
||+|||+|+.|-.||...++.|.+.+.+|+++.+|| |+-+.|.......-. +...|..+.. .++..|++..
T Consensus 41 DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGG---TcLnvGcIPSKALL~-nSh~yh~~q~~~~~~rGi~vs 112 (506)
T KOG1335|consen 41 DVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGG---TCLNVGCIPSKALLN-NSHLYHEAQHEDFASRGIDVS 112 (506)
T ss_pred CEEEECCCCchHHHHHHHHHhcceeEEEeccCccCc---eeeeccccccHHHhh-hhHHHHHHhhhHHHhcCcccc
Confidence 899999999999999999999999999999999999 666666554321100 1122333332 5666676653
No 454
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.16 E-value=1.9e-06 Score=91.60 Aligned_cols=41 Identities=46% Similarity=0.718 Sum_probs=38.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceE
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKT 41 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s 41 (850)
++|+|||||+||++||..|++.|++|.|+|++..+||++..
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 57999999999999999999999999999999999998554
No 455
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.14 E-value=5.4e-06 Score=81.48 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=73.3
Q ss_pred HHHHHHHHHcC-CCCC--CeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCC
Q 038410 602 RKVSLLIEKAR-VNKG--LDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQ 676 (850)
Q Consensus 602 ~~~~~~~~~l~-~~~~--~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~ 676 (850)
-|+..+.++.+ ++++ .+|||+||+.|+++..+.++. ..+|+|+|+.+. ..+ ..+.++++|..+
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~ 74 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITN 74 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEE
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccch
Confidence 46778888888 5554 899999999999999999983 489999999887 111 256677777543
Q ss_pred CC---------C--CCCccEEEEecchhhhCh---------hhHHHHHHHHHhccccCeEEEEEEec
Q 038410 677 MP---------E--VKKYDTIISCEMIENVGH---------EYIEEFFGCCESLLAEHGLLLLQFSS 723 (850)
Q Consensus 677 ~~---------~--~~~fD~v~s~~~~~~~~~---------~~~~~~~~~~~r~LkpgG~~~~~~~~ 723 (850)
.. . .+.||+|+|-.....-++ +-....+.-+.+.|||||.+++-.+.
T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 21 1 268999999874332221 22344555667889999999986654
No 456
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.13 E-value=2.2e-06 Score=103.19 Aligned_cols=40 Identities=48% Similarity=0.791 Sum_probs=37.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (850)
|+|+|||||+|||+||++|++.|++|||+|+++.+||.+.
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 5899999999999999999999999999999999999754
No 457
>PRK00536 speE spermidine synthase; Provisional
Probab=98.12 E-value=2.1e-05 Score=80.50 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=76.7
Q ss_pred CCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCEEEEEcccCCCCCCCCccEEEEec
Q 038410 614 NKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEA--GL-QDHIRLYLCDYRQMPEVKKYDTIISCE 690 (850)
Q Consensus 614 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~--gl-~~~v~~~~~D~~~~~~~~~fD~v~s~~ 690 (850)
+..++||=||.|-|+.++.+.+++ .+|+-|||+++.++.+++..... ++ ..+++++. .+.+. ..++||+|+.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~-~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDL-DIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhc-cCCcCCEEEEcC
Confidence 455899999999999999999985 59999999999999999954431 12 34677765 22221 236899999875
Q ss_pred chhhhChhhHHHHHHHHHhccccCeEEEEEEe
Q 038410 691 MIENVGHEYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
.+ .+.+++.+++.|+|||.++.|.-
T Consensus 148 ~~-------~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 148 EP-------DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CC-------ChHHHHHHHHhcCCCcEEEECCC
Confidence 41 26888999999999999999753
No 458
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.11 E-value=2.6e-05 Score=80.31 Aligned_cols=229 Identities=15% Similarity=0.194 Sum_probs=123.0
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCeEEEEecCCCCCCcceEEe--eCCeeeecceeeccCCCchHHHHHHHHcC--
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKA----GVEVVLYEKEDSLGGHAKTVT--IDGVDLDIGFMLFNHVEYPNMMEFLESLG-- 72 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~----G~~V~VlEa~~~~GG~~~s~~--~~G~~~d~G~~~~~~~~~~~~~~l~~~lg-- 72 (850)
|.+-|||+|+|||++|..|-|. |.++.++|.-...||..-... ..|+++.-|...- ..+..+++|++.+-
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRemE--nhfEc~WDlfrsIPSL 100 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREME--NHFECLWDLFRSIPSL 100 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHHH--HHHHHHHHHHhcCccc
Confidence 4678999999999999999887 569999999999999433222 2567665554442 35666777776542
Q ss_pred -CCcc-------------cccceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcC
Q 038410 73 -VDMG-------------TSDMSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELEN 138 (850)
Q Consensus 73 -l~~~-------------~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (850)
++.. +....+.+...+|+++.-.+...+.. .. ..++.++. ..
T Consensus 101 ei~naSvldEfy~~d~~dPn~s~cRli~k~g~rv~ddg~~tl~~----------~~----~~ei~kL~----------~t 156 (587)
T COG4716 101 EIPNASVLDEFYWLDKDDPNSSNCRLIHKRGRRVDDDGSFTLNN----------KA----RKEIIKLL----------MT 156 (587)
T ss_pred cCCCcHHHHHHHhccCCCCCccceeeeeccccccccccccccCh----------hh----HHHHHHHH----------cC
Confidence 2211 11122333334444443333222211 11 11122111 11
Q ss_pred CCCCCCCCcHHHHHhhcCCCHHHHHHHHhhhhcccccCCcchhccCCHHHHHHHHH-HhhhcCC-CcE----EEecCChH
Q 038410 139 SPDIDRNETLGHFIKSRGYSELFLKAYLIPICSSVWSCPSDGAMRFSAFSVLSFCR-LFQLFGH-PQC----VTVRRHSH 212 (850)
Q Consensus 139 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~-~~~----~~~~gG~~ 212 (850)
.....++.++.+|+...-+...|.-.+-.-+...-|. |+.-+-+|+. ++..+.+ +.+ +..-.-..
T Consensus 157 ~EE~L~~~tI~d~Fse~FF~sNFW~yW~tmFAFekWh---------Sa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYe 227 (587)
T COG4716 157 PEEKLDDLTIEDWFSEDFFKSNFWYYWQTMFAFEKWH---------SAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYE 227 (587)
T ss_pred cHHhcCCccHHHhhhHhhhhhhHHHHHHHHHhhhHHH---------HHHHHHHHHHHHHHHhcCCCcchhhcccccchHH
Confidence 1112257888888877644444432211111111111 2222223322 2222222 111 12234457
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecC--Cc-e--EE-EeeCCcEEe---CCEEEEec
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPAD--EG-C--SI-VCVNGSQEF---YNGCVMAV 264 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~--~~-v--~V-~~~~G~~i~---ad~VV~A~ 264 (850)
+++..|...|+++|+++.++..|+.|+.+. ++ + .+ +..+++.++ -|-|+++.
T Consensus 228 SlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTN 288 (587)
T COG4716 228 SLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTN 288 (587)
T ss_pred HHHHHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEec
Confidence 899999999999999999999999998753 22 2 12 345666554 34555543
No 459
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.11 E-value=2.1e-05 Score=85.28 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCc-EEeCCEEEEecChH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGS-QEFYNGCVMAVHAP 267 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~-~i~ad~VV~A~p~~ 267 (850)
..+.+...+.|+++|++|++|++|++|+.++ |++.+|+ +|.|+.||.|++..
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCc
Confidence 5777888889999999999999999998763 6666776 49999999999864
No 460
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.08 E-value=4.8e-05 Score=88.44 Aligned_cols=56 Identities=13% Similarity=-0.088 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecC---Cce-EEE---eeCCc--EEeCCEEEEecChHH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPAD---EGC-SIV---CVNGS--QEFYNGCVMAVHAPD 268 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~---~~v-~V~---~~~G~--~i~ad~VV~A~p~~~ 268 (850)
.+...+...+.+.+++|+.++.|+++..++ ++| .|. ..+|+ .+.|+.||+||+.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 444555556666678999999999999864 454 333 23554 578999999999864
No 461
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=4.2e-06 Score=83.90 Aligned_cols=111 Identities=19% Similarity=0.255 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-CCC
Q 038410 603 KVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-EVK 681 (850)
Q Consensus 603 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~~~ 681 (850)
+....++.. ..|..+||+|||.|... -..|.+.+.|.|++...+.-+++. | ......+|+..+| .+.
T Consensus 35 ~v~qfl~~~--~~gsv~~d~gCGngky~---~~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~p~~~~ 102 (293)
T KOG1331|consen 35 MVRQFLDSQ--PTGSVGLDVGCGNGKYL---GVNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKLPFREE 102 (293)
T ss_pred HHHHHHhcc--CCcceeeecccCCcccC---cCCCcceeeecchhhhhccccccC----C---CceeehhhhhcCCCCCC
Confidence 334455554 35889999999999655 334789999999999988887754 1 2267889999999 778
Q ss_pred CccEEEEecchhhhChhh-HHHHHHHHHhccccCeEEEEEEecCC
Q 038410 682 KYDTIISCEMIENVGHEY-IEEFFGCCESLLAEHGLLLLQFSSVP 725 (850)
Q Consensus 682 ~fD~v~s~~~~~~~~~~~-~~~~~~~~~r~LkpgG~~~~~~~~~~ 725 (850)
+||.++++.+++|+..+. ...+++++.|+|||||.+++..+...
T Consensus 103 s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 103 SFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 999999999999996543 46689999999999999998777643
No 462
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.04 E-value=4.4e-06 Score=100.16 Aligned_cols=40 Identities=50% Similarity=0.847 Sum_probs=38.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (850)
|+|+|||||+|||+||++|++.|++|+|+|+++.+||.+.
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 6899999999999999999999999999999999999764
No 463
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.03 E-value=2.1e-05 Score=85.46 Aligned_cols=76 Identities=24% Similarity=0.430 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCC
Q 038410 599 AQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQM 677 (850)
Q Consensus 599 aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~ 677 (850)
.-...++.+++.++..++ +|||+-||.|.+++.+|+. ..+|+|||+++++++.|+++++.+++. +++|+.++..++
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~ 256 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHC
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccch
Confidence 345677888888888776 8999999999999999997 789999999999999999999999986 899998876554
No 464
>PRK12831 putative oxidoreductase; Provisional
Probab=98.03 E-value=4.7e-06 Score=94.48 Aligned_cols=40 Identities=43% Similarity=0.571 Sum_probs=37.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (850)
|||+|||||+|||+||++|++.|++|+|+|+++.+||.+.
T Consensus 141 ~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 6899999999999999999999999999999999999653
No 465
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.02 E-value=2.7e-05 Score=78.49 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCc-----eEEEeeCCcEEeCCEEEEecChH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEG-----CSIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-----v~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
..+...+.+..+..|++|.+|-+|.+|...+.. +.|....|+++++..||-++...
T Consensus 196 ~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~ 256 (453)
T KOG2665|consen 196 GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQ 256 (453)
T ss_pred HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEecccc
Confidence 367777888888889999999999999987664 45555667889999999888754
No 466
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.01 E-value=2.7e-05 Score=78.74 Aligned_cols=169 Identities=10% Similarity=0.039 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHHHcCCC-CCCeEEEEccC--ccHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEE
Q 038410 595 DLDVAQMRKVSLLIEKARVN-KGLDVLEIGCG--WGTLAIEIVKQ--TGCKYTGITLSEEQLKYTETKVKEAGLQDHIRL 669 (850)
Q Consensus 595 ~l~~aq~~~~~~~~~~l~~~-~~~~vLDiGcG--~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~ 669 (850)
.+..+.++.+.+..+.+--. .-...|||||| +-...-.+|++ ++++|+-||.++-.+..++..+....- ....+
T Consensus 47 ~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~ 125 (267)
T PF04672_consen 47 EAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAY 125 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEE
Confidence 34455666677777766544 33579999999 34566777776 899999999999999999998765431 24899
Q ss_pred EEcccCCCC---C----CCCcc-----EEEEecchhhhCh-hhHHHHHHHHHhccccCeEEEEEEecCCCCcCCCCcCcc
Q 038410 670 YLCDYRQMP---E----VKKYD-----TIISCEMIENVGH-EYIEEFFGCCESLLAEHGLLLLQFSSVPDQCYDGHRLSP 736 (850)
Q Consensus 670 ~~~D~~~~~---~----~~~fD-----~v~s~~~~~~~~~-~~~~~~~~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~ 736 (850)
+++|+++.. . .+-+| .|+.+.+++|+++ +++..+++.+...|.||.+++++..+..... .......
T Consensus 126 v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p-~~~~~~~ 204 (267)
T PF04672_consen 126 VQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP-ERAEALE 204 (267)
T ss_dssp EE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH-HHHHHHH
T ss_pred EeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH-HHHHHHH
Confidence 999998753 1 12344 7888899999987 7899999999999999999999888754221 0001111
Q ss_pred ccccccccCCCCCCCHHHHHHHHhcCCceEEEE
Q 038410 737 GFITEYVFPGGCLPSLNRITSAMTSSSRLCVEH 769 (850)
Q Consensus 737 ~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~ 769 (850)
....+- .....+-|.+++.+.+ .||++.+
T Consensus 205 ~~~~~~-~~~~~~Rs~~ei~~~f---~g~elve 233 (267)
T PF04672_consen 205 AVYAQA-GSPGRPRSREEIAAFF---DGLELVE 233 (267)
T ss_dssp HHHHHC-CS----B-HHHHHHCC---TTSEE-T
T ss_pred HHHHcC-CCCceecCHHHHHHHc---CCCccCC
Confidence 111111 1223455777775443 3788654
No 467
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.00 E-value=8.2e-05 Score=75.59 Aligned_cols=38 Identities=47% Similarity=0.814 Sum_probs=34.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC--CCCCCcc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKE--DSLGGHA 39 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~--~~~GG~~ 39 (850)
||+|||||+|||.||.+|+.+|.+|+|+|+. ..+||.+
T Consensus 7 dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 7 DVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 8999999999999999999999999999985 4578853
No 468
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.00 E-value=4e-05 Score=79.95 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC-C
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP-E 679 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~-~ 679 (850)
....+.|++.+++.++..|||||+|.|.++..+++. +.+|+++|+++..++..+++.. ..++++++.+|+.++. .
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence 456689999999999999999999999999999998 6999999999999999998765 3358999999999987 2
Q ss_pred C---CCccEEEEecchhhhChhhHHHHHHHHHhcccc
Q 038410 680 V---KKYDTIISCEMIENVGHEYIEEFFGCCESLLAE 713 (850)
Q Consensus 680 ~---~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~Lkp 713 (850)
. .....|+++-.+ +++ ..++.++...-+.
T Consensus 92 ~~~~~~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp GHCSSSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred HhhcCCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence 2 356688887665 553 3455555543333
No 469
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00017 Score=74.72 Aligned_cols=248 Identities=15% Similarity=0.198 Sum_probs=137.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcceEEeeC----------------C----eeeecceeeccCCCc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAKTVTID----------------G----VDLDIGFMLFNHVEY 61 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~----------------G----~~~d~G~~~~~~~~~ 61 (850)
||+|+|-|+.=...+..|+.+|.+|+++|+++.-|+-.+|.... + +.+|+-+..+ ...
T Consensus 8 Dvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l--~A~ 85 (434)
T COG5044 8 DVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFL--FAN 85 (434)
T ss_pred cEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhh--ccc
Confidence 89999999999999999999999999999999999966665431 1 3344444443 244
Q ss_pred hHHHHHHHHcCCCccc--ccceeeEEecCCCccccCCCCCCchhhHHhhhccChHHHHHHHHHHhhhHHHHHHHHhhcCC
Q 038410 62 PNMMEFLESLGVDMGT--SDMSFSVSLDKGQGYEWGTRNGLSSLFAQKKNVLNPYFWQMLREMMKFKDDVLSYVEELENS 139 (850)
Q Consensus 62 ~~~~~l~~~lgl~~~~--~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (850)
..+..++-+.|+..-. ...+-...+.+++.+..+.. .. ..+. .++++-.--+.+..++++ ...+.+.....
T Consensus 86 s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~n-e~-ei~~--s~~lsL~eKr~vmrFl~~---V~n~~~~~~~~ 158 (434)
T COG5044 86 SELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYN-EA-EIFT--SPLLSLFEKRRVMRFLKW---VSNYAEQKSTL 158 (434)
T ss_pred chHHHHHHHhChHhheeeeeccccEEecCCcEEECCcc-HH-hhhc--CCCcchhhHHHHHHHHHH---HHhHHhhhhhc
Confidence 5566777777765432 22333344455555444331 00 0000 001111001112222222 11221111111
Q ss_pred CCCCCCCcHHHHH-hhcCCCHHHHHHHHhhhhcccc-cCCcchhccCCHHHHHHHHHHhhhcCCCcEEEecCChHHHHHH
Q 038410 140 PDIDRNETLGHFI-KSRGYSELFLKAYLIPICSSVW-SCPSDGAMRFSAFSVLSFCRLFQLFGHPQCVTVRRHSHSQIDK 217 (850)
Q Consensus 140 ~~~~~~~s~~~~l-~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 217 (850)
.....+.+..+++ ...+++....+.+...++-.+- ..++.+ ...-++.|+.....++...+.+++-|.+.+++.
T Consensus 159 ~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ldl~~p~re----~~erIl~Y~~Sf~~yg~~pyLyp~YGl~El~QG 234 (434)
T COG5044 159 QELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLDLDIPARE----ALERILRYMRSFGDYGKSPYLYPRYGLGELSQG 234 (434)
T ss_pred hhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhccccCCchH----HHHHHHHHHHhhcccCCCcceeeccCchhhhHH
Confidence 1111222334443 3445544433333222221111 111111 123345566666667777888999889999999
Q ss_pred HHHHhhccCceEeeCCceEEEEecCCce-EEEeeCCcEEeCCEEEEec
Q 038410 218 VSEQLKSWGIQIRMSCEVYSVFPADEGC-SIVCVNGSQEFYNGCVMAV 264 (850)
Q Consensus 218 L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~i~ad~VV~A~ 264 (850)
+++...-.|++..+|+++.+|..... | +|.. ++.+..|..||..-
T Consensus 235 FaRssav~GgtymLn~~i~ein~tk~-v~~v~~-~~~~~ka~KiI~~~ 280 (434)
T COG5044 235 FARSSAVYGGTYMLNQAIDEINETKD-VETVDK-GSLTQKAGKIISSP 280 (434)
T ss_pred HHHhhhccCceeecCcchhhhccccc-eeeeec-CcceeecCcccCCc
Confidence 99988788999999999999988766 3 3332 33457788877653
No 470
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.99 E-value=4.4e-05 Score=82.81 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=83.5
Q ss_pred CCeEEEEccCccHHHHHHHHh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC--CCCCccEEEEecc
Q 038410 616 GLDVLEIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP--EVKKYDTIISCEM 691 (850)
Q Consensus 616 ~~~vLDiGcG~G~~~~~la~~-~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~--~~~~fD~v~s~~~ 691 (850)
+-+|||+.||+|..++.++.+ .| .+|+++|++++.++.++++++.+++. ++++.+.|+..+- ...+||+|..-.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 458999999999999999987 34 58999999999999999999998875 7899999987664 236799998865
Q ss_pred hhhhChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 692 IENVGHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 692 ~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
+. . +..+++.+.+.+++||.++++.
T Consensus 123 fG-s----~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 FG-T----PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CC-C----cHHHHHHHHHhcccCCEEEEEe
Confidence 42 2 3579999999999999999963
No 471
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.98 E-value=7.3e-05 Score=78.18 Aligned_cols=123 Identities=19% Similarity=0.152 Sum_probs=81.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC
Q 038410 601 MRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP 678 (850)
Q Consensus 601 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~ 678 (850)
.+.+..+...+..-...+|||+|||.|.-+..+.+.. -.+++++|.|+.|++.++..++................+..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 3344455444443455699999999997665544432 34899999999999999998765432111111111122211
Q ss_pred CCCCccEEEEecchhhhChhhHHHHHHHHHhccccCeEEEEEEecCC
Q 038410 679 EVKKYDTIISCEMIENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVP 725 (850)
Q Consensus 679 ~~~~fD~v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~ 725 (850)
+-...|+|++.+++..++.+....+++.+.+.+.+ .+++.+.+.+
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 22244999999999999887788888888888777 7777666544
No 472
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.98 E-value=2.1e-05 Score=89.36 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=35.1
Q ss_pred ccCceEeeCCceEEEEecCCceEEEee-CCcEEe--CCEEEEecChH
Q 038410 224 SWGIQIRMSCEVYSVFPADEGCSIVCV-NGSQEF--YNGCVMAVHAP 267 (850)
Q Consensus 224 ~~G~~i~~~~~V~~I~~~~~~v~V~~~-~G~~i~--ad~VV~A~p~~ 267 (850)
+.|++++++++|++|+.+++.+.+... +|+++. +|++|+|++..
T Consensus 68 ~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 68 KSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred HCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 348899999999999988877777642 355666 99999999864
No 473
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.97 E-value=7.4e-06 Score=92.07 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=37.1
Q ss_pred CcEEEECCChHHHHHHHHHHh--CCCeEEEEecCCCCCCcce
Q 038410 1 MRVAVIGGGMSGLVSAYVLAK--AGVEVVLYEKEDSLGGHAK 40 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~--~G~~V~VlEa~~~~GG~~~ 40 (850)
|+|+|||||+|||+||..|++ .|++|+|+|+.+.+||.++
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 589999999999999999987 6999999999999999655
No 474
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.97 E-value=0.00014 Score=82.19 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChH
Q 038410 212 HSQIDKVSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 212 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
..+.+.+.+.+++.|++++++++|++|+. . .|++.+|+++.+|.||+|++..
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCC
Confidence 45677888889999999999999999963 2 4666778889999999999853
No 475
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.96 E-value=5.5e-05 Score=82.06 Aligned_cols=37 Identities=35% Similarity=0.600 Sum_probs=32.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCC---CeEEEEecCCCCCC
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAG---VEVVLYEKEDSLGG 37 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G---~~V~VlEa~~~~GG 37 (850)
++|+|||||.+|+..|.+|.+.- ..|+|+|.....|+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 58999999999999999998861 23999999999887
No 476
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.92 E-value=8.5e-05 Score=69.47 Aligned_cols=100 Identities=13% Similarity=0.265 Sum_probs=73.6
Q ss_pred CCCCCeEEEEccCccHHHHHHHH-----hcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCEEEEEcccCCCCCCCCccE
Q 038410 613 VNKGLDVLEIGCGWGTLAIEIVK-----QTGCKYTGITLSEEQLKYTETKVKEAG--LQDHIRLYLCDYRQMPEVKKYDT 685 (850)
Q Consensus 613 ~~~~~~vLDiGcG~G~~~~~la~-----~~~~~v~gid~s~~~~~~a~~~~~~~g--l~~~v~~~~~D~~~~~~~~~fD~ 685 (850)
..+..+|+|+|||-|.++..++. .++.+|+|||.+++.++.++++.++.+ +..++++...+..+.......+.
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 36788999999999999999999 678999999999999999999998877 55577777777665543456777
Q ss_pred EEEecchhhhChhhHHHHHHHHHhccccCeEEEE
Q 038410 686 IISCEMIENVGHEYIEEFFGCCESLLAEHGLLLL 719 (850)
Q Consensus 686 v~s~~~~~~~~~~~~~~~~~~~~r~LkpgG~~~~ 719 (850)
++....=.-. -+..++...+ |+-.+++
T Consensus 103 ~vgLHaCG~L----s~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 103 LVGLHACGDL----SDRALRLFIR---PNARFLV 129 (141)
T ss_pred EEEeecccch----HHHHHHHHHH---cCCCEEE
Confidence 7765332222 2344444444 5555444
No 477
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.89 E-value=8.3e-05 Score=83.02 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=40.0
Q ss_pred HHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChH
Q 038410 218 VSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 218 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
+.+.++++|++++++++|++|+. ++.+.|++.+|+++.||.||++++..
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCC
Confidence 34444556999999999999986 55677888899899999999999864
No 478
>PRK10742 putative methyltransferase; Provisional
Probab=97.89 E-value=4.3e-05 Score=76.45 Aligned_cols=90 Identities=13% Similarity=0.202 Sum_probs=77.5
Q ss_pred HHHHHHcCCCCCC--eEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCCEEEEEccc
Q 038410 605 SLLIEKARVNKGL--DVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEA------G--LQDHIRLYLCDY 674 (850)
Q Consensus 605 ~~~~~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~------g--l~~~v~~~~~D~ 674 (850)
+.+++.+++++|. +|||+=+|+|..++.++.+ ||+|+++|-|+......++.++.. + +..+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 6888999999999 9999999999999999998 999999999999999999888874 2 235799999997
Q ss_pred CCCC--CCCCccEEEEecchhhh
Q 038410 675 RQMP--EVKKYDTIISCEMIENV 695 (850)
Q Consensus 675 ~~~~--~~~~fD~v~s~~~~~~~ 695 (850)
.+.- ...+||+|+.-.|+.|-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 6543 23479999999999884
No 479
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.89 E-value=1e-05 Score=99.50 Aligned_cols=40 Identities=40% Similarity=0.603 Sum_probs=37.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (850)
|+|+|||||+|||+||++|+++|++|+|+|+.+.+||.++
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 5899999999999999999999999999999999999654
No 480
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.88 E-value=1.2e-05 Score=95.50 Aligned_cols=40 Identities=45% Similarity=0.771 Sum_probs=37.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (850)
|+|+|||||+|||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 5899999999999999999999999999999999999643
No 481
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.87 E-value=0.00012 Score=75.13 Aligned_cols=103 Identities=22% Similarity=0.312 Sum_probs=67.7
Q ss_pred CeEEEEccCccHH-HHHHHHh--cCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCEEEEEcccCCCC-CCCCccEEEEecc
Q 038410 617 LDVLEIGCGWGTL-AIEIVKQ--TGCKYTGITLSEEQLKYTETKVK-EAGLQDHIRLYLCDYRQMP-EVKKYDTIISCEM 691 (850)
Q Consensus 617 ~~vLDiGcG~G~~-~~~la~~--~~~~v~gid~s~~~~~~a~~~~~-~~gl~~~v~~~~~D~~~~~-~~~~fD~v~s~~~ 691 (850)
.+|+=||||.=-+ ++.++++ .++.|+++|++++.++.+++.++ ..|+..+++|+.+|..+.+ .-..||+|+....
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 5999999996555 5666655 46789999999999999999888 6688889999999988776 3468999998866
Q ss_pred hhhhChhhHHHHHHHHHhccccCeEEEEE
Q 038410 692 IENVGHEYIEEFFGCCESLLAEHGLLLLQ 720 (850)
Q Consensus 692 ~~~~~~~~~~~~~~~~~r~LkpgG~~~~~ 720 (850)
...- .+...++++.+.+.++||..+++-
T Consensus 202 Vg~~-~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 202 VGMD-AEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccc-cchHHHHHHHHHhhCCCCcEEEEe
Confidence 5532 234689999999999999999884
No 482
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.86 E-value=4.4e-05 Score=92.22 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhccCceEeeCCceEEEEecCC--ceEEEeeCCcEEeCCEEEEecChH
Q 038410 213 SQIDKVSEQLKSWGIQIRMSCEVYSVFPADE--GCSIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 213 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~--~v~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
...+.+.+.++++|++|++++.|++|..++. ...|++.+|+++.+|.||+|++..
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence 4456678888889999999999999986532 356788899999999999999854
No 483
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.86 E-value=0.00012 Score=81.12 Aligned_cols=50 Identities=12% Similarity=0.206 Sum_probs=41.9
Q ss_pred HHHHhhccCceEeeCCceEEEEecCCceEEEeeCCcEEeCCEEEEecChH
Q 038410 218 VSEQLKSWGIQIRMSCEVYSVFPADEGCSIVCVNGSQEFYNGCVMAVHAP 267 (850)
Q Consensus 218 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~i~ad~VV~A~p~~ 267 (850)
+.+.+++.|++++++++|++|+.+++++.|++.+|+++.||.||+|++..
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence 34445556899999999999998777788888999999999999999853
No 484
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.86 E-value=1.2e-05 Score=89.32 Aligned_cols=40 Identities=40% Similarity=0.577 Sum_probs=38.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (850)
|+|+|||||++||+||+.|+++|++|||+|+.+..||++.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL 163 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence 6899999999999999999999999999999999999754
No 485
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.86 E-value=0.00019 Score=69.68 Aligned_cols=103 Identities=27% Similarity=0.379 Sum_probs=75.0
Q ss_pred EEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCC--CC-CC-CCccEEEEecch
Q 038410 619 VLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQ--MP-EV-KKYDTIISCEMI 692 (850)
Q Consensus 619 vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~--~~-~~-~~fD~v~s~~~~ 692 (850)
+||+|||.|... .+++.. +..++|+|+++.+++.++......+.. .+.+...|... ++ .. ..||.+.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 444432 258999999999999966554332111 16888888776 55 33 489999444455
Q ss_pred hhhChhhHHHHHHHHHhccccCeEEEEEEecCCC
Q 038410 693 ENVGHEYIEEFFGCCESLLAEHGLLLLQFSSVPD 726 (850)
Q Consensus 693 ~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~~~~~ 726 (850)
++.. ....+.++.+.|+|+|.+++.......
T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 5553 688999999999999999997766443
No 486
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.85 E-value=3.9e-05 Score=71.27 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=80.2
Q ss_pred CeEEEEccCccHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCCCCCCccEEEEecchhh-h
Q 038410 617 LDVLEIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMPEVKKYDTIISCEMIEN-V 695 (850)
Q Consensus 617 ~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~~~~~fD~v~s~~~~~~-~ 695 (850)
+.+-|+|.|+|-++..+|+. .-+|++|+.++.-.+.|++++.-.|.. +++++.+|+++... ..-|+|+|- |+.. +
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~f-e~ADvvicE-mlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYDF-ENADVVICE-MLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEecccccccc-cccceeHHH-HhhHHh
Confidence 68999999999999988886 679999999999999999998766764 89999999998874 456877764 4432 2
Q ss_pred ChhhHHHHHHHHHhccccCeEEEEEE
Q 038410 696 GHEYIEEFFGCCESLLAEHGLLLLQF 721 (850)
Q Consensus 696 ~~~~~~~~~~~~~r~LkpgG~~~~~~ 721 (850)
=++.....++.+...||-++.++=+.
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccccHH
Confidence 22334567777888899999887653
No 487
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.85 E-value=8.3e-06 Score=72.29 Aligned_cols=99 Identities=18% Similarity=0.115 Sum_probs=46.3
Q ss_pred EEEccCccHHHHHHHHh--cC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---CCCCccEEEEecch
Q 038410 620 LEIGCGWGTLAIEIVKQ--TG--CKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---EVKKYDTIISCEMI 692 (850)
Q Consensus 620 LDiGcG~G~~~~~la~~--~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---~~~~fD~v~s~~~~ 692 (850)
|||||..|..+..+++. .. .+++++|..+. .+.+++.+++.++.++++++.+|..+.- +.++||+|+.-+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 79999999999888765 22 37999999996 4455555666778889999999986542 3478999998863
Q ss_pred hhhChhhHHHHHHHHHhccccCeEEEEEEe
Q 038410 693 ENVGHEYIEEFFGCCESLLAEHGLLLLQFS 722 (850)
Q Consensus 693 ~~~~~~~~~~~~~~~~r~LkpgG~~~~~~~ 722 (850)
|-. +.....++.+.+.|+|||.++++++
T Consensus 79 -H~~-~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 79 -HSY-EAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp ---H-HHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred -CCH-HHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 211 2347789999999999999999864
No 488
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.85 E-value=1.4e-05 Score=94.57 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=34.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGG 37 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (850)
|+|+|||||+|||+||++|++.|++|||+|+.+..|+
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 6899999999999999999999999999999877665
No 489
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.83 E-value=0.00015 Score=76.16 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=95.1
Q ss_pred HHHHHHcCCCCCCeEEEEccCccHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEEcccCCCC---C
Q 038410 605 SLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYTETKVKEAGLQDHIRLYLCDYRQMP---E 679 (850)
Q Consensus 605 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~~---~ 679 (850)
......+...+|++|||+.++.|+=+.++++.. ..+|++.|+++.-+...++++++.|+. ++.+...|..... .
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~ 153 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKP 153 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHH
T ss_pred ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccccccc
Confidence 455566788999999999999999999999983 479999999999999999999999986 7888888877763 3
Q ss_pred CCCccEEEEe------cchhhhCh--------------hhHHHHHHHHHhcc----ccCeEEEEEEecCC
Q 038410 680 VKKYDTIISC------EMIENVGH--------------EYIEEFFGCCESLL----AEHGLLLLQFSSVP 725 (850)
Q Consensus 680 ~~~fD~v~s~------~~~~~~~~--------------~~~~~~~~~~~r~L----kpgG~~~~~~~~~~ 725 (850)
...||.|+.- +++..-++ +...+.++.+.+.+ ||||+++..+.+..
T Consensus 154 ~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 154 ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 3469999964 23322211 12356899999999 99999999887754
No 490
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.82 E-value=1.7e-05 Score=89.71 Aligned_cols=39 Identities=46% Similarity=0.627 Sum_probs=36.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (850)
|+|+|||||++||+||+.|++.|++|+|+|+++.+||.+
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l 172 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV 172 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe
Confidence 589999999999999999999999999999999999954
No 491
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.82 E-value=1.9e-05 Score=85.97 Aligned_cols=36 Identities=44% Similarity=0.593 Sum_probs=33.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCC
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLG 36 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~G 36 (850)
+||+|||||++|+.||+.|+++|++|+|+|++....
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 589999999999999999999999999999876543
No 492
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.81 E-value=1.8e-05 Score=95.53 Aligned_cols=40 Identities=45% Similarity=0.614 Sum_probs=37.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcce
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHAK 40 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (850)
|+|+|||||+|||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 6899999999999999999999999999999999999643
No 493
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.81 E-value=2.1e-05 Score=86.99 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=36.3
Q ss_pred CcEEEECCChHHHHHHHHHH-hCCCeEEEEecCCCCCCcceE
Q 038410 1 MRVAVIGGGMSGLVSAYVLA-KAGVEVVLYEKEDSLGGHAKT 41 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~-~~G~~V~VlEa~~~~GG~~~s 41 (850)
|+|+|||||+|||.||.+|. +.|++|+|+|+.+.+||.++.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 57999999999999999765 679999999999999996553
No 494
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.79 E-value=0.0074 Score=65.22 Aligned_cols=158 Identities=13% Similarity=0.182 Sum_probs=94.0
Q ss_pred CCeEEEEccCccHHHHHHHHh----------------cCCEEEEEeCCHHHHHHHHHHHHH---------cCC---CCCE
Q 038410 616 GLDVLEIGCGWGTLAIEIVKQ----------------TGCKYTGITLSEEQLKYTETKVKE---------AGL---QDHI 667 (850)
Q Consensus 616 ~~~vLDiGcG~G~~~~~la~~----------------~~~~v~gid~s~~~~~~a~~~~~~---------~gl---~~~v 667 (850)
..+|+|+|||+|.+++.+... +..+|.--|+-..-....=+.+.. .++ ..+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999887665332 135666666654332222111110 000 0010
Q ss_pred EEE---Ecc-cCCCCCCCCccEEEEecchhhhCh------------------------------------hhHHHHHHHH
Q 038410 668 RLY---LCD-YRQMPEVKKYDTIISCEMIENVGH------------------------------------EYIEEFFGCC 707 (850)
Q Consensus 668 ~~~---~~D-~~~~~~~~~fD~v~s~~~~~~~~~------------------------------------~~~~~~~~~~ 707 (850)
-|. -+. |..+-|.++.++++|...+||+.. +++..+++.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 122 223336789999999999988742 1355566667
Q ss_pred HhccccCeEEEEEEecCCCCcCCCCc-Cc----------------cc-----cccccccCCCCCCCHHHHHHHHhcCCce
Q 038410 708 ESLLAEHGLLLLQFSSVPDQCYDGHR-LS----------------PG-----FITEYVFPGGCLPSLNRITSAMTSSSRL 765 (850)
Q Consensus 708 ~r~LkpgG~~~~~~~~~~~~~~~~~~-~~----------------~~-----~~~~~i~p~~~~~~~~~~~~~~~~~~gf 765 (850)
.+-|+|||++++...+.++....... .. .. -+..+.+| -+.|+.+|+.+.+++..-|
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP-~Y~ps~eEv~~~Ie~~gsF 302 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIP-VYAPSLQDFKEVVEANGSF 302 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCc-ccCCCHHHHHHHHhhcCCE
Confidence 77899999999998887542211110 00 01 11233345 4789999999999987779
Q ss_pred EEEEeeecC
Q 038410 766 CVEHLENIG 774 (850)
Q Consensus 766 ~v~~~~~~~ 774 (850)
.+..++.+.
T Consensus 303 ~I~~le~~~ 311 (386)
T PLN02668 303 AIDKLEVFK 311 (386)
T ss_pred EeeeeEEee
Confidence 998888654
No 495
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.78 E-value=0.00017 Score=82.60 Aligned_cols=37 Identities=46% Similarity=0.649 Sum_probs=34.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 038410 2 RVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGH 38 (850)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (850)
||+|||||.|||.||..++++|.+|+|+||....+|.
T Consensus 8 DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 8 DVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 8999999999999999999999999999998887763
No 496
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=2.2e-05 Score=85.03 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=84.1
Q ss_pred cCCChHHHHHhcCCCcceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCeEEEEccCccHHHHHHHHhcCCEEEEEeC
Q 038410 567 YDVSNELFSLFLGKSMMYSCAIFKSEYEDLDVAQMRKVSLLIEKARVNKGLDVLEIGCGWGTLAIEIVKQTGCKYTGITL 646 (850)
Q Consensus 567 Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~ 646 (850)
|+...-.++.++|=++..|..-|-+.+. .+-.-.+..+-+.++++++..+||+-||+|.+++.+|+. -.+|+||++
T Consensus 338 ~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt---~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi 413 (534)
T KOG2187|consen 338 VGGDPYITESLLGLTFRISPGAFFQTNT---SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEI 413 (534)
T ss_pred EccccEEEeecCCeEEEECCchhhccCc---HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeec
Confidence 4433355667777778887554433322 222345667778899999999999999999999999997 679999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCEEEEEcccCCC
Q 038410 647 SEEQLKYTETKVKEAGLQDHIRLYLCDYRQM 677 (850)
Q Consensus 647 s~~~~~~a~~~~~~~gl~~~v~~~~~D~~~~ 677 (850)
|++.++.|+.+++.+|++ |.+|+++-++++
T Consensus 414 ~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~ 443 (534)
T KOG2187|consen 414 SPDAVEDAEKNAQINGIS-NATFIVGQAEDL 443 (534)
T ss_pred ChhhcchhhhcchhcCcc-ceeeeecchhhc
Confidence 999999999999999997 899999966654
No 497
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.76 E-value=2.4e-05 Score=92.51 Aligned_cols=39 Identities=36% Similarity=0.745 Sum_probs=37.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (850)
|+|+|||||++||+||+.|++.|++|+|+|+++.+||.+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l 232 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMM 232 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 589999999999999999999999999999999999964
No 498
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.76 E-value=2.5e-05 Score=89.06 Aligned_cols=39 Identities=44% Similarity=0.744 Sum_probs=37.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (850)
|+|+|||||++||+||+.|++.|++|+|+|+.+.+||..
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l 182 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLL 182 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcee
Confidence 589999999999999999999999999999999999954
No 499
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.76 E-value=8e-05 Score=80.66 Aligned_cols=61 Identities=13% Similarity=0.221 Sum_probs=45.1
Q ss_pred EecCCh-HHHHHHHHHHhhc-cCceEeeCCceEEEEecCC-ce-EEEeeC--C--cEEeCCEEEEecCh
Q 038410 206 TVRRHS-HSQIDKVSEQLKS-WGIQIRMSCEVYSVFPADE-GC-SIVCVN--G--SQEFYNGCVMAVHA 266 (850)
Q Consensus 206 ~~~gG~-~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~-~v-~V~~~~--G--~~i~ad~VV~A~p~ 266 (850)
...+.. ..+...|.+++++ .+++|..++.+.+|..+++ .+ .|.+.+ + ..+.++.||+|++.
T Consensus 126 H~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 126 HAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred EecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 334433 3577888888876 4799999999999999988 44 454432 2 46789999999975
No 500
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.76 E-value=2.3e-05 Score=90.56 Aligned_cols=39 Identities=49% Similarity=0.753 Sum_probs=37.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 038410 1 MRVAVIGGGMSGLVSAYVLAKAGVEVVLYEKEDSLGGHA 39 (850)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (850)
|+|+|||+|+|||+||-.|-+.||.|+|+|+++|+||..
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll 1824 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLL 1824 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCcee
Confidence 689999999999999999999999999999999999953
Done!