BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038418
         (487 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8C8U0|LIPB1_MOUSE Liprin-beta-1 OS=Mus musculus GN=Ppfibp1 PE=1 SV=3
          Length = 969

 Score = 34.3 bits (77), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 125 LVVSELKLLSELKQCYLK------KQFDFSPEKTMVSAEIQELKSL-LKTYEIMGKKLES 177
           L   +L+L++E+    LK       + D+          IQE+  L LK  E+ G++L+ 
Sbjct: 165 LETQKLELMAEISNLKLKLTAVEKDRLDYEDRFRDTEGLIQEINDLRLKVNEMDGERLQY 224

Query: 178 QLKLKDS--EIIFLKEKLEESNKQNKALEKRM 207
           + KLK +  E+  LKE+LEE   + K L++R+
Sbjct: 225 EKKLKSTKDELASLKEQLEEKECEVKRLQERL 256


>sp|A4FBX6|ARC_SACEN Proteasome-associated ATPase OS=Saccharopolyspora erythraea (strain
           NRRL 23338) GN=arc PE=3 SV=1
          Length = 597

 Score = 34.3 bits (77), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 28/41 (68%)

Query: 174 KLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQLV 214
           +L SQ++L + E+  L+ KL ES +Q + LEKR+ ++ + V
Sbjct: 23  ELNSQIRLLEDEVALLRRKLNESPQQVRLLEKRLAEASERV 63


>sp|A6L227|RNY_BACV8 Ribonuclease Y OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447
           / NCTC 11154) GN=rny PE=3 SV=1
          Length = 511

 Score = 33.1 bits (74), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 4/100 (4%)

Query: 126 VVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSE 185
           V+ + KLL E+K+ +L K+ D   E  + + +IQ+ ++ LK  E+M  + + +++ K +E
Sbjct: 44  VIKKNKLL-EVKEKFLNKKADLEKEVALRNQKIQQAENKLKQRELMLNQKQEEVQRKRTE 102

Query: 186 IIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLS 225
              +KE LE    Q   ++K+ ++  +L M +   L  LS
Sbjct: 103 AEAIKENLE---AQIVIIDKKKDELDKLQMQEREKLEALS 139


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.130    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,184,200
Number of Sequences: 539616
Number of extensions: 6587967
Number of successful extensions: 66825
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 57434
Number of HSP's gapped (non-prelim): 7758
length of query: 487
length of database: 191,569,459
effective HSP length: 121
effective length of query: 366
effective length of database: 126,275,923
effective search space: 46216987818
effective search space used: 46216987818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)