Query 038418
Match_columns 487
No_of_seqs 112 out of 134
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 10:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04859 DUF641: Plant protein 100.0 2.7E-47 5.8E-52 342.8 15.4 130 78-207 2-131 (131)
2 PF10205 KLRAQ: Predicted coil 92.7 0.6 1.3E-05 41.5 7.9 57 152-208 8-64 (102)
3 PRK09039 hypothetical protein; 92.3 4.1 8.9E-05 42.8 14.9 109 83-199 76-187 (343)
4 PF08317 Spc7: Spc7 kinetochor 90.5 11 0.00024 39.1 15.7 120 84-211 145-271 (325)
5 PF01025 GrpE: GrpE; InterPro 86.6 0.7 1.5E-05 42.6 3.5 52 406-478 109-161 (165)
6 COG0497 RecN ATPase involved i 85.9 9.4 0.0002 42.9 12.3 90 96-193 267-365 (557)
7 PF11559 ADIP: Afadin- and alp 84.5 33 0.00071 31.5 13.8 100 80-194 51-150 (151)
8 PRK11448 hsdR type I restricti 83.2 14 0.00031 44.7 13.1 102 88-196 107-210 (1123)
9 KOG2264 Exostosin EXT1L [Signa 83.0 7.3 0.00016 44.0 9.7 59 150-208 94-152 (907)
10 PRK10869 recombination and rep 81.7 18 0.00039 40.3 12.4 130 100-256 246-388 (553)
11 PF08614 ATG16: Autophagy prot 81.2 3 6.6E-05 40.0 5.5 114 91-208 27-168 (194)
12 PF06785 UPF0242: Uncharacteri 80.4 20 0.00044 38.2 11.4 167 155-348 172-346 (401)
13 PRK11637 AmiB activator; Provi 80.0 30 0.00064 37.1 12.9 51 153-203 188-238 (428)
14 PRK11637 AmiB activator; Provi 79.7 92 0.002 33.4 16.5 44 154-197 80-123 (428)
15 PF04102 SlyX: SlyX; InterPro 79.3 10 0.00022 31.1 7.1 50 154-203 2-51 (69)
16 PF12329 TMF_DNA_bd: TATA elem 79.1 11 0.00025 31.3 7.5 55 154-208 17-71 (74)
17 smart00787 Spc7 Spc7 kinetocho 77.8 89 0.0019 32.8 15.2 56 156-211 211-266 (312)
18 COG2433 Uncharacterized conser 77.6 37 0.0008 38.8 13.0 88 80-198 421-509 (652)
19 PF08317 Spc7: Spc7 kinetochor 76.2 27 0.00058 36.3 10.9 85 118-209 160-248 (325)
20 PF10211 Ax_dynein_light: Axon 75.5 45 0.00098 32.3 11.6 36 87-122 83-118 (189)
21 COG2433 Uncharacterized conser 75.0 11 0.00023 42.9 8.0 58 154-211 434-508 (652)
22 smart00787 Spc7 Spc7 kinetocho 74.9 35 0.00075 35.7 11.4 111 88-209 113-243 (312)
23 COG0576 GrpE Molecular chapero 74.7 3.2 7E-05 40.4 3.6 49 406-475 135-183 (193)
24 PF09726 Macoilin: Transmembra 73.2 19 0.00041 41.6 9.7 98 162-272 544-665 (697)
25 PF12325 TMF_TATA_bd: TATA ele 71.3 8.3 0.00018 35.1 5.1 35 171-205 17-51 (120)
26 TIGR01010 BexC_CtrB_KpsE polys 71.2 1.4E+02 0.0029 31.2 16.1 84 84-167 173-260 (362)
27 PRK00295 hypothetical protein; 70.6 25 0.00055 28.8 7.4 50 154-203 3-52 (68)
28 PRK10884 SH3 domain-containing 70.3 51 0.0011 32.6 10.8 49 158-206 120-168 (206)
29 PRK02793 phi X174 lysis protei 69.7 27 0.00059 28.9 7.4 51 152-202 4-54 (72)
30 PF09738 DUF2051: Double stran 69.5 36 0.00078 35.6 10.0 74 129-204 81-160 (302)
31 PF15290 Syntaphilin: Golgi-lo 69.2 39 0.00085 35.3 9.9 69 166-254 71-139 (305)
32 PRK14150 heat shock protein Gr 69.0 4.8 0.0001 39.2 3.3 55 406-481 137-192 (193)
33 PRK14151 heat shock protein Gr 68.2 6.3 0.00014 38.0 3.9 55 406-481 119-174 (176)
34 cd00446 GrpE GrpE is the adeni 68.1 5.3 0.00011 36.3 3.2 50 406-476 83-132 (137)
35 PF07106 TBPIP: Tat binding pr 67.6 17 0.00036 34.1 6.5 59 151-209 74-134 (169)
36 PRK04406 hypothetical protein; 67.5 28 0.00061 29.2 7.2 48 153-200 8-55 (75)
37 PRK00736 hypothetical protein; 67.0 31 0.00067 28.3 7.2 50 154-203 3-52 (68)
38 COG4026 Uncharacterized protei 66.9 42 0.0009 34.2 9.3 99 88-208 73-187 (290)
39 PRK04325 hypothetical protein; 66.9 30 0.00066 28.8 7.2 51 153-203 6-56 (74)
40 PRK14153 heat shock protein Gr 66.4 12 0.00025 36.8 5.4 58 406-484 131-189 (194)
41 PF07106 TBPIP: Tat binding pr 66.4 20 0.00044 33.5 6.8 79 103-198 58-137 (169)
42 TIGR00634 recN DNA repair prot 66.1 1.7E+02 0.0036 32.7 14.9 135 99-257 252-394 (563)
43 PF08614 ATG16: Autophagy prot 65.2 61 0.0013 31.2 10.0 55 153-207 127-181 (194)
44 PRK14140 heat shock protein Gr 65.0 6.6 0.00014 38.4 3.4 53 407-480 136-189 (191)
45 PRK02119 hypothetical protein; 64.2 39 0.00085 28.1 7.4 49 152-200 5-53 (73)
46 PRK14158 heat shock protein Gr 63.1 9 0.0002 37.6 3.9 54 407-480 138-192 (194)
47 TIGR00634 recN DNA repair prot 62.7 1.4E+02 0.003 33.3 13.5 93 93-196 268-372 (563)
48 PRK00846 hypothetical protein; 62.4 44 0.00096 28.4 7.4 52 153-204 10-61 (77)
49 PF15290 Syntaphilin: Golgi-lo 62.4 57 0.0012 34.1 9.6 41 155-195 88-135 (305)
50 PF12718 Tropomyosin_1: Tropom 61.2 39 0.00085 31.4 7.6 55 154-208 5-59 (143)
51 PRK14144 heat shock protein Gr 60.7 8.6 0.00019 37.9 3.3 54 407-481 143-197 (199)
52 PF12709 Kinetocho_Slk19: Cent 60.6 37 0.0008 29.6 6.7 33 167-199 46-78 (87)
53 COG5185 HEC1 Protein involved 60.6 79 0.0017 35.4 10.7 62 134-199 298-359 (622)
54 PF08826 DMPK_coil: DMPK coile 60.5 48 0.001 27.1 7.0 20 187-206 28-47 (61)
55 PHA02562 46 endonuclease subun 60.0 2.2E+02 0.0048 31.0 14.3 105 80-207 298-402 (562)
56 PF05984 Cytomega_UL20A: Cytom 59.9 3.8 8.3E-05 35.6 0.7 16 389-404 1-16 (100)
57 PRK14145 heat shock protein Gr 59.8 9.2 0.0002 37.6 3.4 52 407-479 141-193 (196)
58 PRK14161 heat shock protein Gr 59.5 12 0.00025 36.3 4.0 55 407-481 120-175 (178)
59 PRK14160 heat shock protein Gr 59.3 11 0.00024 37.4 3.9 52 407-480 157-209 (211)
60 PRK14154 heat shock protein Gr 59.1 12 0.00026 37.2 4.0 55 406-480 151-206 (208)
61 PHA02562 46 endonuclease subun 58.8 2.1E+02 0.0046 31.1 13.9 20 154-173 304-323 (562)
62 PRK14148 heat shock protein Gr 58.6 10 0.00022 37.3 3.4 55 406-481 138-193 (195)
63 PF05529 Bap31: B-cell recepto 58.0 37 0.0008 32.3 7.1 34 165-198 156-189 (192)
64 PF09726 Macoilin: Transmembra 57.4 51 0.0011 38.2 9.2 44 155-198 611-657 (697)
65 PRK14147 heat shock protein Gr 57.2 9.9 0.00021 36.5 3.0 54 406-480 114-168 (172)
66 PRK14162 heat shock protein Gr 55.7 13 0.00027 36.6 3.5 54 407-480 138-192 (194)
67 PRK14141 heat shock protein Gr 55.7 11 0.00025 37.3 3.2 55 407-482 136-191 (209)
68 COG3883 Uncharacterized protei 55.3 1.2E+02 0.0025 31.5 10.4 54 152-205 165-218 (265)
69 PF06818 Fez1: Fez1; InterPro 55.1 19 0.00042 35.7 4.7 38 171-208 18-55 (202)
70 PF15619 Lebercilin: Ciliary p 55.0 50 0.0011 32.3 7.5 48 151-198 63-110 (194)
71 PF11932 DUF3450: Protein of u 54.5 1.7E+02 0.0038 29.1 11.4 52 152-203 52-103 (251)
72 PRK10325 heat shock protein Gr 54.3 12 0.00026 36.7 3.1 56 406-482 138-194 (197)
73 PRK10884 SH3 domain-containing 53.3 59 0.0013 32.1 7.8 23 174-196 122-144 (206)
74 KOG4552 Vitamin-D-receptor int 53.0 57 0.0012 33.0 7.5 29 169-197 73-101 (272)
75 PF02050 FliJ: Flagellar FliJ 52.8 1.3E+02 0.0029 24.9 11.6 78 126-205 17-94 (123)
76 COG4942 Membrane-bound metallo 52.4 1.7E+02 0.0036 32.3 11.5 40 154-193 64-103 (420)
77 PF06818 Fez1: Fez1; InterPro 52.1 68 0.0015 31.9 7.9 56 154-209 50-105 (202)
78 PRK14155 heat shock protein Gr 52.1 18 0.00039 35.9 4.0 58 406-483 114-172 (208)
79 TIGR02169 SMC_prok_A chromosom 51.5 3E+02 0.0064 32.5 14.4 45 156-200 420-464 (1164)
80 PF04156 IncA: IncA protein; 51.4 2.1E+02 0.0046 26.8 12.5 29 162-190 122-150 (191)
81 PRK11546 zraP zinc resistance 50.5 1.1E+02 0.0024 28.9 8.7 34 108-141 38-71 (143)
82 PF10234 Cluap1: Clusterin-ass 50.4 1.8E+02 0.004 30.1 11.0 35 108-142 62-96 (267)
83 PF14584 DUF4446: Protein of u 50.1 63 0.0014 30.5 7.1 17 126-142 18-34 (151)
84 PF07926 TPR_MLP1_2: TPR/MLP1/ 49.0 2.1E+02 0.0045 26.0 12.6 105 87-207 20-128 (132)
85 PF14257 DUF4349: Domain of un 48.9 1.4E+02 0.003 29.8 9.7 27 184-210 169-195 (262)
86 PF11500 Cut12: Spindle pole b 48.5 50 0.0011 31.5 6.1 31 179-209 100-130 (152)
87 COG4942 Membrane-bound metallo 48.2 62 0.0013 35.5 7.6 62 131-203 38-106 (420)
88 PRK04778 septation ring format 48.1 4.1E+02 0.0088 29.9 14.2 38 94-131 228-266 (569)
89 TIGR02231 conserved hypothetic 48.0 2.4E+02 0.0053 31.0 12.3 46 158-203 126-171 (525)
90 PF00038 Filament: Intermediat 47.4 3.1E+02 0.0068 27.6 12.4 54 156-209 195-248 (312)
91 TIGR02473 flagell_FliJ flagell 47.0 1.6E+02 0.0034 26.0 8.9 80 125-205 31-110 (141)
92 PRK14139 heat shock protein Gr 46.7 21 0.00046 34.8 3.5 54 406-481 128-182 (185)
93 PRK09039 hypothetical protein; 46.7 2.8E+02 0.006 29.3 12.0 15 238-252 190-204 (343)
94 COG3879 Uncharacterized protei 46.2 35 0.00075 34.9 5.0 14 242-255 139-152 (247)
95 KOG0250 DNA repair protein RAD 46.0 2.9E+02 0.0062 33.9 13.0 26 117-142 337-362 (1074)
96 KOG0996 Structural maintenance 45.6 1.7E+02 0.0037 36.1 11.1 53 83-135 460-514 (1293)
97 PRK14157 heat shock protein Gr 45.2 20 0.00043 36.1 3.1 49 414-482 175-224 (227)
98 KOG3647 Predicted coiled-coil 44.7 4E+02 0.0087 28.1 12.7 135 107-267 2-144 (338)
99 KOG0804 Cytoplasmic Zn-finger 44.6 70 0.0015 35.5 7.2 41 158-198 409-449 (493)
100 COG4913 Uncharacterized protei 44.4 3.2E+02 0.007 32.6 12.6 108 79-198 621-733 (1104)
101 PF05266 DUF724: Protein of un 43.8 1E+02 0.0022 30.2 7.6 18 183-200 130-147 (190)
102 KOG0993 Rab5 GTPase effector R 43.5 5.1E+02 0.011 28.9 14.8 120 81-208 338-465 (542)
103 TIGR03185 DNA_S_dndD DNA sulfu 43.0 2.3E+02 0.005 32.2 11.4 47 157-203 422-468 (650)
104 PRK13729 conjugal transfer pil 42.5 72 0.0016 35.5 7.1 24 171-194 98-121 (475)
105 PF10779 XhlA: Haemolysin XhlA 42.0 1.3E+02 0.0028 24.6 7.0 49 155-203 5-53 (71)
106 PF10805 DUF2730: Protein of u 42.0 1.2E+02 0.0025 26.8 7.1 39 168-206 47-87 (106)
107 PF12777 MT: Microtubule-bindi 41.5 1.5E+02 0.0033 31.0 9.0 90 113-207 183-272 (344)
108 PF04156 IncA: IncA protein; 41.0 3.1E+02 0.0067 25.7 10.6 18 104-121 59-76 (191)
109 PRK14143 heat shock protein Gr 41.0 24 0.00053 35.6 3.1 56 406-482 166-222 (238)
110 COG1579 Zn-ribbon protein, pos 41.0 4.1E+02 0.0089 27.1 14.7 104 89-197 32-137 (239)
111 PF11853 DUF3373: Protein of u 40.7 17 0.00038 40.3 2.1 25 185-209 32-56 (489)
112 KOG0977 Nuclear envelope prote 40.5 30 0.00065 39.0 3.9 94 177-298 296-394 (546)
113 PF10018 Med4: Vitamin-D-recep 40.0 1.6E+02 0.0034 28.3 8.3 32 172-203 31-62 (188)
114 KOG1937 Uncharacterized conser 39.7 5.8E+02 0.013 28.7 13.2 61 91-160 244-304 (521)
115 PF05983 Med7: MED7 protein; 39.6 57 0.0012 31.0 5.1 32 167-198 128-159 (162)
116 TIGR01843 type_I_hlyD type I s 39.6 4.1E+02 0.0089 27.4 11.9 49 157-205 131-179 (423)
117 PF03962 Mnd1: Mnd1 family; I 39.6 2E+02 0.0042 28.0 8.9 28 171-198 70-97 (188)
118 KOG0250 DNA repair protein RAD 39.4 1.1E+02 0.0024 37.1 8.4 23 86-108 226-248 (1074)
119 KOG0995 Centromere-associated 39.1 3.2E+02 0.007 31.3 11.4 44 155-198 279-322 (581)
120 TIGR03007 pepcterm_ChnLen poly 39.1 5.3E+02 0.012 27.9 14.2 73 132-208 262-348 (498)
121 PF05667 DUF812: Protein of un 38.7 5.2E+02 0.011 29.7 13.2 29 168-196 452-480 (594)
122 PF05565 Sipho_Gp157: Siphovir 38.4 2.4E+02 0.0053 26.5 9.1 43 161-203 38-80 (162)
123 PF08172 CASP_C: CASP C termin 38.3 1.1E+02 0.0024 31.1 7.2 53 152-207 78-130 (248)
124 PRK14146 heat shock protein Gr 37.9 31 0.00067 34.4 3.2 49 414-482 159-212 (215)
125 PRK14164 heat shock protein Gr 37.7 27 0.0006 34.9 2.8 46 414-481 169-215 (218)
126 PF05700 BCAS2: Breast carcino 37.6 2.3E+02 0.005 27.9 9.2 14 99-112 105-118 (221)
127 PF05377 FlaC_arch: Flagella a 37.5 81 0.0018 25.4 4.8 36 172-207 2-37 (55)
128 PF06810 Phage_GP20: Phage min 37.3 2.4E+02 0.0051 26.7 8.8 51 154-208 25-79 (155)
129 KOG0976 Rho/Rac1-interacting s 37.1 1.6E+02 0.0036 35.1 9.0 83 151-239 360-453 (1265)
130 KOG0994 Extracellular matrix g 36.7 6.3E+02 0.014 31.8 13.7 47 89-140 1561-1607(1758)
131 COG1382 GimC Prefoldin, chaper 36.6 1E+02 0.0022 28.4 5.9 42 158-199 72-113 (119)
132 COG1196 Smc Chromosome segrega 36.4 3.4E+02 0.0074 33.2 12.1 19 93-111 374-392 (1163)
133 KOG0161 Myosin class II heavy 35.9 2.5E+02 0.0055 36.5 11.1 53 152-204 932-984 (1930)
134 COG3883 Uncharacterized protei 35.8 5.2E+02 0.011 26.9 13.4 130 117-261 31-163 (265)
135 PRK14159 heat shock protein Gr 35.8 45 0.00097 32.3 3.8 44 415-479 129-173 (176)
136 COG1508 RpoN DNA-directed RNA 35.5 1.9E+02 0.0041 32.1 8.8 111 87-206 142-302 (444)
137 COG2900 SlyX Uncharacterized p 35.4 2.1E+02 0.0045 24.3 7.1 52 152-203 4-55 (72)
138 KOG4603 TBP-1 interacting prot 35.3 2.6E+02 0.0057 27.6 8.8 37 152-193 103-139 (201)
139 PF15003 HAUS2: HAUS augmin-li 35.2 2.1E+02 0.0046 29.8 8.7 30 175-204 73-103 (277)
140 PF07439 DUF1515: Protein of u 34.9 1.2E+02 0.0027 27.6 6.1 47 133-179 17-63 (112)
141 PF14817 HAUS5: HAUS augmin-li 34.8 7.8E+02 0.017 28.6 13.9 51 154-204 84-134 (632)
142 PF05812 Herpes_BLRF2: Herpesv 34.7 2.5E+02 0.0054 25.9 8.1 63 182-251 1-65 (118)
143 PRK14163 heat shock protein Gr 34.4 34 0.00074 34.2 2.9 56 407-483 132-188 (214)
144 PF01486 K-box: K-box region; 34.2 3E+02 0.0065 23.6 8.5 50 158-207 48-98 (100)
145 TIGR02169 SMC_prok_A chromosom 34.1 8.5E+02 0.019 28.8 15.5 11 456-466 1144-1155(1164)
146 PF13815 Dzip-like_N: Iguana/D 33.9 1.2E+02 0.0025 27.1 5.9 39 154-192 78-116 (118)
147 PF05600 DUF773: Protein of un 33.8 3.5E+02 0.0076 30.3 10.8 89 114-205 397-488 (507)
148 TIGR00606 rad50 rad50. This fa 33.5 3.6E+02 0.0079 33.4 11.8 50 154-203 827-876 (1311)
149 KOG4643 Uncharacterized coiled 33.4 1.6E+02 0.0035 35.9 8.3 27 120-146 131-157 (1195)
150 PF05529 Bap31: B-cell recepto 33.4 1.4E+02 0.003 28.5 6.7 32 176-207 153-184 (192)
151 PF12329 TMF_DNA_bd: TATA elem 33.4 2.8E+02 0.0061 23.1 7.7 39 157-195 34-72 (74)
152 PF14555 UBA_4: UBA-like domai 33.3 36 0.00077 25.1 2.1 19 247-265 18-36 (43)
153 cd00632 Prefoldin_beta Prefold 33.2 1.2E+02 0.0026 26.3 5.8 33 164-196 71-103 (105)
154 KOG1114 Tripeptidyl peptidase 32.9 4.9E+02 0.011 32.1 11.9 129 119-258 1137-1284(1304)
155 PF15272 BBP1_C: Spindle pole 32.9 5.1E+02 0.011 25.8 11.3 84 98-205 40-128 (196)
156 PRK15422 septal ring assembly 32.8 1E+02 0.0023 26.5 5.1 38 171-208 5-42 (79)
157 KOG1962 B-cell receptor-associ 32.7 4.5E+02 0.0098 26.5 10.3 43 154-196 149-191 (216)
158 PF11559 ADIP: Afadin- and alp 32.6 2.7E+02 0.0059 25.4 8.3 9 121-129 31-39 (151)
159 KOG2189 Vacuolar H+-ATPase V0 32.5 2.5E+02 0.0054 33.3 9.5 85 118-205 43-134 (829)
160 PRK15178 Vi polysaccharide exp 32.4 3.5E+02 0.0075 30.0 10.3 55 154-208 284-338 (434)
161 PF08657 DASH_Spc34: DASH comp 32.3 1.1E+02 0.0024 31.4 6.2 35 130-168 179-213 (259)
162 PF04859 DUF641: Plant protein 31.8 4.3E+02 0.0093 24.7 10.2 83 121-203 8-113 (131)
163 TIGR02338 gimC_beta prefoldin, 31.8 2E+02 0.0043 25.2 7.0 70 125-196 38-107 (110)
164 PF00038 Filament: Intermediat 31.4 1.8E+02 0.0039 29.4 7.5 57 152-208 71-127 (312)
165 PF04977 DivIC: Septum formati 31.1 83 0.0018 25.1 4.1 34 172-205 26-59 (80)
166 PRK13729 conjugal transfer pil 30.8 1E+02 0.0023 34.3 6.0 12 86-97 54-65 (475)
167 PRK14149 heat shock protein Gr 30.8 65 0.0014 31.7 4.1 53 407-481 135-188 (191)
168 COG1196 Smc Chromosome segrega 30.1 8.7E+02 0.019 29.8 14.1 18 89-106 766-783 (1163)
169 KOG3809 Microtubule-binding pr 30.1 5.1E+02 0.011 29.1 10.9 109 82-199 438-554 (583)
170 PF04111 APG6: Autophagy prote 29.9 6.4E+02 0.014 26.4 11.4 54 153-206 82-135 (314)
171 TIGR02894 DNA_bind_RsfA transc 29.7 3E+02 0.0065 26.7 8.1 36 172-207 99-134 (161)
172 PF03234 CDC37_N: Cdc37 N term 29.7 5.4E+02 0.012 25.1 10.5 32 168-199 129-160 (177)
173 PRK04863 mukB cell division pr 29.6 1.2E+03 0.027 29.8 15.4 41 156-196 362-402 (1486)
174 PF09403 FadA: Adhesion protei 29.6 4.6E+02 0.0099 24.3 9.8 33 159-191 89-121 (126)
175 KOG0614 cGMP-dependent protein 29.0 1.6E+02 0.0035 33.8 7.1 45 159-203 20-64 (732)
176 KOG0612 Rho-associated, coiled 28.9 1.3E+03 0.028 29.2 15.2 144 87-255 699-852 (1317)
177 PF05911 DUF869: Plant protein 28.8 2.6E+02 0.0057 33.1 9.1 42 162-203 112-153 (769)
178 PF00769 ERM: Ezrin/radixin/mo 28.7 5.6E+02 0.012 25.9 10.4 45 163-207 82-126 (246)
179 TIGR01843 type_I_hlyD type I s 28.6 6.7E+02 0.015 25.9 14.0 19 122-140 124-142 (423)
180 PF00170 bZIP_1: bZIP transcri 28.4 2.6E+02 0.0056 22.0 6.5 30 174-203 30-59 (64)
181 PRK10869 recombination and rep 28.4 8.9E+02 0.019 27.2 17.7 32 165-196 336-367 (553)
182 PF12614 RRF_GI: Ribosome recy 28.3 1.1E+02 0.0024 28.5 4.8 67 134-200 33-100 (128)
183 PRK14142 heat shock protein Gr 28.2 60 0.0013 32.7 3.4 51 414-483 132-183 (223)
184 TIGR03185 DNA_S_dndD DNA sulfu 28.2 2.8E+02 0.0061 31.5 9.1 44 153-196 206-249 (650)
185 PF14662 CCDC155: Coiled-coil 28.2 6.1E+02 0.013 25.3 12.8 50 154-203 65-114 (193)
186 PF07160 DUF1395: Protein of u 28.1 5.3E+02 0.011 26.1 10.1 66 127-201 2-67 (243)
187 PF09763 Sec3_C: Exocyst compl 28.0 1.3E+02 0.0028 34.4 6.5 95 168-268 42-139 (701)
188 KOG0996 Structural maintenance 28.0 4.1E+02 0.009 33.0 10.5 47 151-197 822-878 (1293)
189 TIGR02680 conserved hypothetic 27.7 1.3E+03 0.029 29.0 16.3 34 93-126 816-853 (1353)
190 PF12018 DUF3508: Domain of un 27.5 6.1E+02 0.013 26.0 10.6 83 116-198 4-90 (281)
191 PF04977 DivIC: Septum formati 27.3 1.5E+02 0.0033 23.5 5.1 32 178-209 18-49 (80)
192 KOG0964 Structural maintenance 27.2 2.1E+02 0.0045 34.9 7.8 52 154-205 423-474 (1200)
193 PF10481 CENP-F_N: Cenp-F N-te 27.0 2.6E+02 0.0056 29.5 7.7 45 161-205 72-116 (307)
194 PF01920 Prefoldin_2: Prefoldi 26.8 1.7E+02 0.0037 24.5 5.5 39 169-207 61-99 (106)
195 PF07851 TMPIT: TMPIT-like pro 26.8 2E+02 0.0043 30.7 7.1 87 95-207 4-91 (330)
196 PRK04778 septation ring format 26.5 9.6E+02 0.021 27.0 14.6 59 82-141 283-341 (569)
197 PF00170 bZIP_1: bZIP transcri 26.5 2E+02 0.0043 22.7 5.5 37 164-200 27-63 (64)
198 KOG0161 Myosin class II heavy 26.5 8.4E+02 0.018 32.1 13.3 30 80-109 1385-1414(1930)
199 KOG1853 LIS1-interacting prote 26.4 7.7E+02 0.017 25.9 10.8 96 135-264 24-130 (333)
200 PRK10803 tol-pal system protei 26.3 2.2E+02 0.0047 28.9 7.1 15 335-349 245-259 (263)
201 PF11598 COMP: Cartilage oligo 26.2 2E+02 0.0044 22.2 5.2 38 153-197 5-42 (45)
202 PF05591 DUF770: Protein of un 26.2 1.1E+02 0.0025 29.1 4.7 25 114-142 99-123 (157)
203 TIGR02209 ftsL_broad cell divi 26.0 2.9E+02 0.0064 22.5 6.7 44 162-206 23-66 (85)
204 PHA00727 hypothetical protein 25.9 6.2E+02 0.013 25.6 9.8 89 128-242 12-112 (278)
205 KOG0976 Rho/Rac1-interacting s 25.5 2.4E+02 0.0053 33.8 7.9 46 132-177 82-127 (1265)
206 KOG3003 Molecular chaperone of 25.4 3.1E+02 0.0066 28.1 7.8 70 170-265 71-140 (236)
207 PF11365 DUF3166: Protein of u 24.9 1.4E+02 0.0029 26.6 4.6 79 173-251 4-89 (96)
208 TIGR01005 eps_transp_fam exopo 24.9 1.1E+03 0.024 27.1 15.2 30 132-165 303-332 (754)
209 PF11932 DUF3450: Protein of u 24.8 3.2E+02 0.0069 27.2 7.8 44 156-199 49-92 (251)
210 PF12808 Mto2_bdg: Micro-tubul 24.7 1.5E+02 0.0033 23.6 4.4 42 168-209 6-47 (52)
211 PF15188 CCDC-167: Coiled-coil 24.6 2.7E+02 0.0059 24.2 6.3 28 151-178 38-65 (85)
212 PRK02224 chromosome segregatio 24.6 1.1E+03 0.023 27.5 13.2 19 409-427 815-833 (880)
213 PF11221 Med21: Subunit 21 of 24.6 5.6E+02 0.012 23.6 9.2 108 84-196 10-141 (144)
214 PRK04863 mukB cell division pr 24.5 1.3E+03 0.028 29.7 14.3 102 96-211 1032-1138(1486)
215 PF09849 DUF2076: Uncharacteri 24.5 2.7E+02 0.0058 28.5 7.3 30 88-130 7-36 (247)
216 PRK14143 heat shock protein Gr 24.1 6.4E+02 0.014 25.6 9.8 25 238-266 114-138 (238)
217 PF09766 FimP: Fms-interacting 23.9 2.7E+02 0.0059 29.6 7.5 86 166-271 87-177 (355)
218 COG5124 Protein predicted to b 23.8 7.1E+02 0.015 24.8 9.6 27 275-301 172-200 (209)
219 PF05739 SNARE: SNARE domain; 23.6 3.4E+02 0.0074 20.7 8.6 36 154-196 23-58 (63)
220 PF12128 DUF3584: Protein of u 23.4 1.5E+03 0.032 28.1 14.6 84 117-200 249-336 (1201)
221 COG4026 Uncharacterized protei 23.3 4.1E+02 0.0089 27.4 8.1 47 152-198 159-205 (290)
222 PF09457 RBD-FIP: FIP domain ; 23.2 2.4E+02 0.0052 22.0 5.2 28 171-198 8-35 (48)
223 PF05667 DUF812: Protein of un 23.1 2.6E+02 0.0056 32.0 7.6 51 156-206 328-378 (594)
224 smart00338 BRLZ basic region l 23.1 2.6E+02 0.0057 22.0 5.6 28 175-202 31-58 (65)
225 KOG3091 Nuclear pore complex, 23.1 2.3E+02 0.0051 31.8 7.0 57 153-209 338-394 (508)
226 TIGR03017 EpsF chain length de 23.1 9.1E+02 0.02 25.5 16.1 28 90-117 180-207 (444)
227 COG3096 MukB Uncharacterized p 22.8 3.8E+02 0.0083 32.2 8.7 71 127-204 515-598 (1480)
228 KOG0980 Actin-binding protein 22.8 1.5E+03 0.031 27.8 15.3 98 154-251 506-645 (980)
229 PF10112 Halogen_Hydrol: 5-bro 22.7 5.6E+02 0.012 24.5 8.9 28 115-142 120-147 (199)
230 PRK11459 multidrug resistance 22.5 1E+03 0.022 25.8 13.0 58 80-142 375-432 (478)
231 PF05278 PEARLI-4: Arabidopsis 22.4 9.1E+02 0.02 25.2 11.6 50 154-203 191-240 (269)
232 TIGR03545 conserved hypothetic 22.3 4.9E+02 0.011 29.6 9.4 43 156-199 164-206 (555)
233 PF13863 DUF4200: Domain of un 22.0 3.8E+02 0.0083 23.4 7.0 52 158-209 55-106 (126)
234 KOG0963 Transcription factor/C 21.8 1.4E+02 0.003 34.4 5.0 34 162-195 309-342 (629)
235 KOG0994 Extracellular matrix g 21.6 1.7E+03 0.037 28.4 13.8 17 90-106 1621-1637(1758)
236 PF02403 Seryl_tRNA_N: Seryl-t 21.5 3.8E+02 0.0083 23.0 6.8 70 112-181 24-99 (108)
237 PF01166 TSC22: TSC-22/dip/bun 21.4 83 0.0018 25.7 2.4 22 184-205 14-35 (59)
238 PRK01156 chromosome segregatio 21.3 1.4E+03 0.03 26.9 14.0 26 87-113 152-177 (895)
239 PRK14127 cell division protein 21.3 2.1E+02 0.0045 25.9 5.1 36 162-208 33-68 (109)
240 PHA03011 hypothetical protein; 21.2 4.1E+02 0.009 24.1 6.9 30 170-199 85-114 (120)
241 PRK13182 racA polar chromosome 21.2 3.9E+02 0.0085 25.8 7.4 42 168-209 97-143 (175)
242 KOG4797 Transcriptional regula 21.2 1E+02 0.0022 28.2 3.1 23 184-206 67-89 (123)
243 KOG0243 Kinesin-like protein [ 21.1 4.4E+02 0.0096 32.3 9.1 26 174-199 487-512 (1041)
244 COG4839 FtsL Protein required 21.1 6.7E+02 0.015 23.3 9.0 95 104-205 3-102 (120)
245 PRK14161 heat shock protein Gr 20.9 7.8E+02 0.017 23.9 10.4 24 238-265 66-89 (178)
246 COG4985 ABC-type phosphate tra 20.9 9.6E+02 0.021 25.0 10.4 70 87-166 160-231 (289)
247 PF04201 TPD52: Tumour protein 20.8 2.4E+02 0.0052 27.3 5.7 34 174-207 33-66 (162)
248 PRK00888 ftsB cell division pr 20.8 1.4E+02 0.0031 26.4 4.0 31 178-208 28-58 (105)
249 KOG2391 Vacuolar sorting prote 20.7 4.7E+02 0.01 28.3 8.3 36 160-195 243-278 (365)
250 PF04111 APG6: Autophagy prote 20.5 4.2E+02 0.0091 27.7 8.0 6 342-347 252-257 (314)
251 PF07544 Med9: RNA polymerase 20.4 4.6E+02 0.0099 22.1 6.8 10 93-102 8-17 (83)
252 KOG1899 LAR transmembrane tyro 20.3 1E+03 0.023 28.0 11.3 117 83-205 169-295 (861)
253 COG2882 FliJ Flagellar biosynt 20.2 7.6E+02 0.016 23.5 9.2 68 128-199 37-107 (148)
254 COG1269 NtpI Archaeal/vacuolar 20.1 4.7E+02 0.01 30.2 8.9 53 151-203 87-139 (660)
255 PF14257 DUF4349: Domain of un 20.1 7.9E+02 0.017 24.4 9.6 52 156-207 132-185 (262)
No 1
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=100.00 E-value=2.7e-47 Score=342.83 Aligned_cols=130 Identities=58% Similarity=0.776 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHH
Q 038418 78 TELEYRISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAE 157 (487)
Q Consensus 78 ~~~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~ae 157 (487)
+++++..++|++|++|||+||+||+||+|||+||+|||||+|++||++||+||++||+||++|++++.+++|+.+++.++
T Consensus 2 ~~~~~~~~~eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~ 81 (131)
T PF04859_consen 2 EEAQRAAAMEALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAE 81 (131)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
|+|||++|+|||++++|||+|+++||+||..||++|+++.+.|++|||||
T Consensus 82 ~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 82 IQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999996
No 2
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=92.72 E-value=0.6 Score=41.50 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
+-|.|+...++..+-++..-..+|..+++.||..|-.+.++++.+.-+|..|+||+.
T Consensus 8 sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~ 64 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVE 64 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888988888999999999999999999999999999999999999999953
No 3
>PRK09039 hypothetical protein; Validated
Probab=92.33 E-value=4.1 Score=42.77 Aligned_cols=109 Identities=21% Similarity=0.174 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHh--HhHHHHHHHHH-hhHHHHHHHhhcCCCCCchhhhHHHHHH
Q 038418 83 RISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQ--SADQLVVSELK-LLSELKQCYLKKQFDFSPEKTMVSAEIQ 159 (487)
Q Consensus 83 ~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~--aAD~~vVsEL~-~Ls~LK~~y~~~~~~~~~~~~~l~aei~ 159 (487)
...++.-|+.|=+..++.++-=..|+.+.- .+.. ..++.-.++|+ .|+++|..|-.. .|+...|.++|.
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~----~~~~~~~~~~~~~~~l~~~L~~~k~~~se~----~~~V~~L~~qI~ 147 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLA----ELAGAGAAAEGRAGELAQELDSEKQVSARA----LAQVELLNQQIA 147 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhcchHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHH
Confidence 344445555555555544443333333211 1111 12223333343 788888877764 567788899999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 160 ELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 160 e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
.++.-+..-+..+..+|.+.+..+..|..|+++|+.+...
T Consensus 148 aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 148 ALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888888888888888888888888766543
No 4
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.52 E-value=11 Score=39.06 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhh-c----CCCCCc--hhhhHHH
Q 038418 84 ISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLK-K----QFDFSP--EKTMVSA 156 (487)
Q Consensus 84 ~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~-~----~~~~~~--~~~~l~a 156 (487)
...+.+...|-..+..|+.-|..|.. .+...|.++-.=..+.+.|+..... + +..... ....+.+
T Consensus 145 ~ll~gl~~~L~~~~~~L~~D~~~L~~--------~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~ 216 (325)
T PF08317_consen 145 QLLEGLKEGLEENLELLQEDYAKLDK--------QLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQ 216 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHH
Confidence 34455777777777778777777763 3444443333211233333333321 0 111111 1244556
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccC
Q 038418 157 EIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSG 211 (487)
Q Consensus 157 ei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~ 211 (487)
++.++..-+......+..|+.++...+.+|..+.++..++...-..+++.+..+.
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666776667777788888888888888888888888877777777665443
No 5
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=86.60 E-value=0.7 Score=42.61 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=34.5
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEE
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQV 478 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crV 478 (487)
++..+.+. |..|||.+||-|...... +..+..|.=.+.|||++|++||+ ++|
T Consensus 109 Gv~~i~~~-G~~FDp~~heav~~~~~~--------------------~~~~~~I~~v~~~GY~~~~rvlRpA~V 161 (165)
T PF01025_consen 109 GVEEIEPV-GEPFDPNLHEAVETVPDP--------------------DKEPGTIVEVVRPGYRLGGRVLRPAEV 161 (165)
T ss_dssp TEEEE--T-SSB--TTTEEEEEEECSS--------------------SS-CTBEEEECC-EEEETTEEEE-EEE
T ss_pred CCEecCCC-CCCCCHHHheeheecCcC--------------------CCCcCeEEEEEecCEEECCEEeeeeEE
Confidence 56677777 999999999998754321 12456788899999999999887 344
No 6
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.94 E-value=9.4 Score=42.95 Aligned_cols=90 Identities=20% Similarity=0.194 Sum_probs=47.2
Q ss_pred HHhhHHHHHHHHHhh---------cCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhh
Q 038418 96 SISTVKSSYVQLQHA---------QSPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLK 166 (487)
Q Consensus 96 ~VSslKaAY~qLQ~A---------h~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~ 166 (487)
.+..+-.||.+|+.| .++|||+.+... -+=|..|..|+|.|....-+. -....++++.-..|.
T Consensus 267 ~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~v----e~Rl~~L~~l~RKY~~~~~~l----~~~~~~~~~el~~L~ 338 (557)
T COG0497 267 LAELLEEALYELEEASEELRAYLDELEFDPNRLEEV----EERLFALKSLARKYGVTIEDL----LEYLDKIKEELAQLD 338 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH----HHHHHHHHHHHHHhCCCHHHH----HHHHHHHHHHHHHhh
Confidence 344556688888876 469999887653 334556666676666432222 223344444444444
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038418 167 TYEIMGKKLESQLKLKDSEIIFLKEKL 193 (487)
Q Consensus 167 tye~~~~kLe~e~~~KDsei~~Lk~kL 193 (487)
..+.-.+.||.++..=-.+...+-++|
T Consensus 339 ~~~~~~~~Le~~~~~l~~~~~~~A~~L 365 (557)
T COG0497 339 NSEESLEALEKEVKKLKAELLEAAEAL 365 (557)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555554444333333333333
No 7
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.47 E-value=33 Score=31.45 Aligned_cols=100 Identities=22% Similarity=0.287 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHH
Q 038418 80 LEYRISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQ 159 (487)
Q Consensus 80 ~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~ 159 (487)
......+..-+.++=..+..++..+-.|+ +++..+..-+.+-..+...|+..+.. ....+..+-+
T Consensus 51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~--------~~~~~~ere~~~~~~~~~~l~~~~~~-------~~~~~k~~ke 115 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRSDIERLQNDVERLK--------EQLEELERELASAEEKERQLQKQLKS-------LEAKLKQEKE 115 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 33444444455555556666666666664 55666666555555555555544443 1223444455
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 038418 160 ELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLE 194 (487)
Q Consensus 160 e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~ 194 (487)
|.+.+-..........+-|++.||-||..||++|.
T Consensus 116 e~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 116 ELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555566666788899999999999999885
No 8
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=83.15 E-value=14 Score=44.68 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhHHHHHHH-HHhhcCCCCchhHhHh-HHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhh
Q 038418 88 AFLAKLFASISTVKSSYVQ-LQHAQSPYDADGIQSA-DQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLL 165 (487)
Q Consensus 88 ali~~lFa~VSslKaAY~q-LQ~Ah~PyDpdkI~aA-D~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll 165 (487)
..+..+|.-..=+-..|.. -...--||||..+..+ ......||. .|++..... .-......+.++.....+
T Consensus 107 ~~Lk~lf~l~~Wf~~~Y~~~~~~~~~~F~~p~~p~~~~~~~~~~~~---~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 179 (1123)
T PRK11448 107 MGLKLAFRLAVWFHRTYGKDWDFKPGPFVPPEDPENLLHALQQEVL---TLKQQLELQ----AREKAQSQALAEAQQQEL 179 (1123)
T ss_pred HHHHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCcchhhhhHHHHH---HHHHHHHHh----hhhhhhhhhhHHHHHHHH
Confidence 5567788776666666655 2233457998877533 333445555 444443210 001122333444444455
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 166 KTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 166 ~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
+..+.+.++++++..+-+.++..|+++..+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (1123)
T PRK11448 180 VALEGLAAELEEKQQELEAQLEQLQEKAAET 210 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555666666666666666666666655543
No 9
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=83.04 E-value=7.3 Score=44.01 Aligned_cols=59 Identities=25% Similarity=0.283 Sum_probs=51.8
Q ss_pred hhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 150 EKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 150 ~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
..+.++++-||++|-+..|-..+++|+..+-+|..|+..||..+++++.+-+.|-.+-+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 45668899999999999999999999999999999999999999999887777655533
No 10
>PRK10869 recombination and repair protein; Provisional
Probab=81.72 E-value=18 Score=40.34 Aligned_cols=130 Identities=13% Similarity=0.200 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhcCCCCchhHhHhHH--HHHHHHHhhHHHHHHHhhcCCCCCch-hhhHHHHHHHHHHhhhHHHHHHHHHH
Q 038418 100 VKSSYVQLQHAQSPYDADGIQSADQ--LVVSELKLLSELKQCYLKKQFDFSPE-KTMVSAEIQELKSLLKTYEIMGKKLE 176 (487)
Q Consensus 100 lKaAY~qLQ~Ah~PyDpdkI~aAD~--~vVsEL~~Ls~LK~~y~~~~~~~~~~-~~~l~aei~e~q~ll~tye~~~~kLe 176 (487)
+..+.-+|+.. .=|||+-=..++. -+..+|+.++.-=+.|.. ..+..|. ...++.++..++.|-|-|...+..+-
T Consensus 246 l~~~~~~l~~~-~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~-~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~ 323 (553)
T PRK10869 246 LYSAKQLLSEL-IGMDSKLSGVLDMLEEALIQIQEASDELRHYLD-RLDLDPNRLAELEQRLSKQISLARKHHVSPEELP 323 (553)
T ss_pred HHHHHHHHHHH-hhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 44555566655 5677653222222 233455555544445554 2344444 35677778888888888864443332
Q ss_pred H-------HH---hhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHHHHHHHHHHHHHHHH
Q 038418 177 S-------QL---KLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTVLRHTVKSIRSFVRL 246 (487)
Q Consensus 177 ~-------e~---~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~~A~~Sir~F~Kl 246 (487)
. ++ ...+..+..|+++++++...-..+-++|.. .=.++...|.+.
T Consensus 324 ~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~-------------------------~R~~aA~~l~~~ 378 (553)
T PRK10869 324 QHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQ-------------------------SRQRYAKELAQL 378 (553)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHH
Confidence 2 22 223334444444444443333222222221 123677889999
Q ss_pred HHHHHHhcCC
Q 038418 247 MIDELKSAGW 256 (487)
Q Consensus 247 Li~~Mk~agw 256 (487)
+..+|+.-|-
T Consensus 379 v~~~L~~L~m 388 (553)
T PRK10869 379 ITESMHELSM 388 (553)
T ss_pred HHHHHHHcCC
Confidence 9999887554
No 11
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.22 E-value=3 Score=40.01 Aligned_cols=114 Identities=27% Similarity=0.292 Sum_probs=25.2
Q ss_pred HHHHHHHhhHHHHHHHHHhh-------c-------CCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCC-------c
Q 038418 91 AKLFASISTVKSSYVQLQHA-------Q-------SPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFS-------P 149 (487)
Q Consensus 91 ~~lFa~VSslKaAY~qLQ~A-------h-------~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~-------~ 149 (487)
.+|++.++.++..=..||.. | .|-.+..|..-+..+..--..|+++ |+.+ .... .
T Consensus 27 ~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael---~r~~-~el~~~L~~~~~ 102 (194)
T PF08614_consen 27 NRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAEL---YRSK-GELAQQLVELND 102 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccc-cccccccccccc
Confidence 67888899999888888862 1 2223333444444444333344444 3432 1111 1
Q ss_pred hhhhHHHHHH-------HHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 150 EKTMVSAEIQ-------ELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 150 ~~~~l~aei~-------e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
....+.+++. +++..+...+..++.|+.+++.|+.-+..|+.++..++-.+..+|+|+.
T Consensus 103 ~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 103 ELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333333 3333333344444455555555555555555555555555566666543
No 12
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=80.41 E-value=20 Score=38.17 Aligned_cols=167 Identities=18% Similarity=0.266 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHHHH
Q 038418 155 SAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTVLR 234 (487)
Q Consensus 155 ~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~ 234 (487)
...+.-+|.|...|.++...=-.=++.|...|..|+.|.+++.-.-+.| .+-. .++-+++ + -+|+
T Consensus 172 aE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL----LQle-~~~~e~~--p-~~~~------- 236 (401)
T PF06785_consen 172 AEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL----LQLE-SDMKESM--P-STPS------- 236 (401)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHhh-hhhhhcC--C-CCCc-------
Confidence 3345556667777777776666667788888888888888854433222 1100 0111111 1 1121
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC--CHHHHhhhcCCCc-ccccCCcchHHHHHHHHHHHhccCCCCCCCCCCcchhhhhhH
Q 038418 235 HTVKSIRSFVRLMIDELKSAGW--DIDAAANSIQPNV-VYYRADHKCFAFESFVCREMFDAFHYPNYSPAKQHQQQQQQQ 311 (487)
Q Consensus 235 ~A~~Sir~F~KlLi~~Mk~agw--Dl~aaa~si~p~v-~y~k~~h~kfalEA~v~r~MF~gFe~~~F~~~~~s~~~~~d~ 311 (487)
.+.+.-.+-|.++++..-. .-..+|+++...- ....++-.-|++| ||.+|++-.+++-++=- ..-|
T Consensus 237 ---~~s~~v~~ql~selkkivf~~enie~A~slTasry~~~e~svhnysLd---cRrLfDsLreEnlgmlf-----VYs~ 305 (401)
T PF06785_consen 237 ---PSSQDVPKQLVSELKKIVFKVENIEAASSLTASRYINSESSVHNYSLD---CRRLFDSLREENLGMLF-----VYSP 305 (401)
T ss_pred ---chhhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHhhhccCCccccchHH---HHHHHhhhcccccceEE-----Eecc
Confidence 1223333444455543211 1223444443221 1222333457555 99999999998855421 2333
Q ss_pred HHHHHHHH--HHhhhcCCCCHHHHHhcCCC---ChHHHHHHH
Q 038418 312 QQRQQLFF--QRFNELKPVKAKEFLSRKPK---SSFAKFCRA 348 (487)
Q Consensus 312 ~~~r~~~F--~~F~~lk~~~p~e~L~~~p~---s~FskFC~~ 348 (487)
+.+| .-| ++|..+-+-...++|...++ +++..+=+.
T Consensus 306 k~qR-llFAN~~fk~wtGy~~edFl~~~~dIV~eGl~qW~~d 346 (401)
T PF06785_consen 306 KSQR-LLFANSQFKTWTGYSSEDFLKDFSDIVQEGLAQWETD 346 (401)
T ss_pred hhhH-HHHhHHHHHHHhccCHHHHHhcchHHHHhhHHHHHHH
Confidence 3333 444 46777778888888888876 677777555
No 13
>PRK11637 AmiB activator; Provisional
Probab=79.97 E-value=30 Score=37.06 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 153 MVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 153 ~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
.++.+..+++.+++..+....+|+.+...|..++..|+.++.+....-..|
T Consensus 188 ~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l 238 (428)
T PRK11637 188 ELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSEL 238 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777777787777777777777777666544443333
No 14
>PRK11637 AmiB activator; Provisional
Probab=79.70 E-value=92 Score=33.38 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESN 197 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~ 197 (487)
+..+|...+..++..+..+++++.++.....+|..++++|++..
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555443
No 15
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=79.27 E-value=10 Score=31.06 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
+++.|.+++..+.--|-++..|...+-...-+|..|++.|..+..+-+.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999988899999999999999999999999996665554444
No 16
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.13 E-value=11 Score=31.30 Aligned_cols=55 Identities=31% Similarity=0.320 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
|..|.+.+..---.+..+++||.+++..-+.+|..|+.+++++...-..|+.|+.
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444567788889888888888999999999888888888877764
No 17
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.77 E-value=89 Score=32.76 Aligned_cols=56 Identities=23% Similarity=0.206 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccC
Q 038418 156 AEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSG 211 (487)
Q Consensus 156 aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~ 211 (487)
++|.++..-+...-..+..++.|+....+.|....++..++...-..+++.++.++
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333333333333344555555555555555555555555555555555544443
No 18
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.55 E-value=37 Score=38.78 Aligned_cols=88 Identities=23% Similarity=0.199 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHH-hhHHHHHHHhhcCCCCCchhhhHHHHH
Q 038418 80 LEYRISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELK-LLSELKQCYLKKQFDFSPEKTMVSAEI 158 (487)
Q Consensus 80 ~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~-~Ls~LK~~y~~~~~~~~~~~~~l~aei 158 (487)
.......+.-+.+|=.-++.|++---+|+ ..+++|+ +|.++++....+.+ ..-||
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k----------------~eie~L~~~l~~~~r~~~~~~~--------~~rei 476 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELK----------------REIEKLESELERFRREVRDKVR--------KDREI 476 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHh--------hhHHH
Confidence 34566677788999999999998776766 4567777 78888877764311 12233
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 159 QELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 159 ~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
+. .+-.+.+|+.++..++..|+.|+.+|+++.+
T Consensus 477 ~~-------~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 477 RA-------RDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3444588888888888888888888877754
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.15 E-value=27 Score=36.30 Aligned_cols=85 Identities=24% Similarity=0.267 Sum_probs=55.6
Q ss_pred hHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHH----HHHHHHHHHHhhhhHHHHHHHHHH
Q 038418 118 GIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYE----IMGKKLESQLKLKDSEIIFLKEKL 193 (487)
Q Consensus 118 kI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye----~~~~kLe~e~~~KDsei~~Lk~kL 193 (487)
.++.-.+.+...+..|.++...... ....|..++..+|.+....+ ..++.|+.++..-+.+|..+|++|
T Consensus 160 ~L~~D~~~L~~~~~~l~~~~~~l~~-------~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 160 LLQEDYAKLDKQLEQLDELLPKLRE-------RKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555544443 23557778888877776555 347788888888888888888888
Q ss_pred HHHHHhhHhHhhhhhc
Q 038418 194 EESNKQNKALEKRMNQ 209 (487)
Q Consensus 194 ~e~~~~n~~Lekrl~~ 209 (487)
+++...-..+..++..
T Consensus 233 ~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 233 AELQEELEELEEKIEE 248 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887777777665543
No 20
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.51 E-value=45 Score=32.29 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHh
Q 038418 87 EAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSA 122 (487)
Q Consensus 87 eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aA 122 (487)
..|+.+|.+....+=+||..|....+-|.-.+.-.+
T Consensus 83 GlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~ 118 (189)
T PF10211_consen 83 GLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQA 118 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999887766655443333
No 21
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=74.98 E-value=11 Score=42.91 Aligned_cols=58 Identities=31% Similarity=0.413 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH-----------------HhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccC
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQ-----------------LKLKDSEIIFLKEKLEESNKQNKALEKRMNQSG 211 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e-----------------~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~ 211 (487)
|..|+++++..+..+...+.+|+++ ++++|.+|..|+.+|.+..+.-..|+++|+...
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554443 445666777777777776666666766666544
No 22
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.95 E-value=35 Score=35.73 Aligned_cols=111 Identities=24% Similarity=0.391 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCCCC----------------chhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchh
Q 038418 88 AFLAKLFASISTVKSSYVQLQHAQSPYD----------------ADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEK 151 (487)
Q Consensus 88 ali~~lFa~VSslKaAY~qLQ~Ah~PyD----------------pdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~ 151 (487)
.+|..=|-.| ..|+.||.-..=|+ -+.++.-++.+..++..|.+++...+.. .
T Consensus 113 ~lm~~Qf~lv----K~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~-------~ 181 (312)
T smart00787 113 LLMDKQFQLV----KTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDR-------K 181 (312)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 3455555444 34666666655554 2455556666666666666666555542 2
Q ss_pred hhHHHHHHHHHHhhhHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 152 TMVSAEIQELKSLLKTYEI----MGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~----~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
..|..++..+|.+...-+. .+++++.++..-+.+|...+.+|.+....-..++.+|..
T Consensus 182 ~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~ 243 (312)
T smart00787 182 DALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIED 243 (312)
T ss_pred HHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666544332 578888888888888888888888888877777777664
No 23
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=74.75 E-value=3.2 Score=40.36 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=38.2
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ 475 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik 475 (487)
++.-+.+ .|..|||.++|-|..... ++..+..|.-.+-.||++|++||+
T Consensus 135 Gv~~i~~-~Ge~FDP~~HeAv~~~~~--------------------~~~~~~tVv~v~qkGY~l~dRVLR 183 (193)
T COG0576 135 GVEEIGP-EGEKFDPNLHEAVQRVES--------------------EDVEPNTVVEVLQKGYKLNDRVLR 183 (193)
T ss_pred CCEEeCC-CCCCCCHHHhhheeeecC--------------------CCCCCCeEEEEeecCeeeCCEecc
Confidence 5666777 899999999999875421 123456788889999999999997
No 24
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.18 E-value=19 Score=41.56 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=52.2
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH---------------------HHHHhhHhHhhhhhccCCCcCCcccc
Q 038418 162 KSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLE---------------------ESNKQNKALEKRMNQSGQLVMPDNVH 220 (487)
Q Consensus 162 q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~---------------------e~~~~n~~Lekrl~~s~~ls~~d~l~ 220 (487)
+...+..|.-+++|+.|++.||.++..|..++. .+.-+|.-||+-| |...-
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL------saEtr-- 615 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL------SAETR-- 615 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh------hHHHH--
Confidence 334445555555555555555555555555554 4444444444432 11111
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhh---hcCCCcccc
Q 038418 221 LSGLSPSHFNTVLRHTVKSIRSFVRLMIDELKSAGWDIDAAAN---SIQPNVVYY 272 (487)
Q Consensus 221 ~s~lsp~~F~~~l~~A~~Sir~F~KlLi~~Mk~agwDl~aaa~---si~p~v~y~ 272 (487)
+--++| .+|.+|++-+...-..++..=++-- ||.+.+. ++-|++.|.
T Consensus 616 ---iKldLf-saLg~akrq~ei~~~~~~~~d~ei~-~lk~ki~~~~av~p~~~~~ 665 (697)
T PF09726_consen 616 ---IKLDLF-SALGDAKRQLEIAQGQLRKKDKEIE-ELKAKIAQLLAVMPSDSYC 665 (697)
T ss_pred ---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCccccc
Confidence 122566 8999999999888887775433211 2333222 456776664
No 25
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.32 E-value=8.3 Score=35.12 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 171 MGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 171 ~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
++.+|+++++.+|.|+..|+.+|..+......+..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~ 51 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELRE 51 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777777777777777777777665555443
No 26
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=71.16 E-value=1.4e+02 Score=31.15 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHH-hhHHHHHHHhh--cCC-CCCchhhhHHHHHH
Q 038418 84 ISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELK-LLSELKQCYLK--KQF-DFSPEKTMVSAEIQ 159 (487)
Q Consensus 84 ~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~-~Ls~LK~~y~~--~~~-~~~~~~~~l~aei~ 159 (487)
..++.-+.++-..+.....+..+.|..|-=+||+.=..+-.-.+++|+ .|++++..+.. ... +.+|..-.+.++++
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~ 252 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIK 252 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Confidence 345555666667777888888999999999999885555555677777 56666655542 222 33677666777777
Q ss_pred HHHHhhhH
Q 038418 160 ELKSLLKT 167 (487)
Q Consensus 160 e~q~ll~t 167 (487)
.++..++.
T Consensus 253 ~l~~~i~~ 260 (362)
T TIGR01010 253 SLRKQIDE 260 (362)
T ss_pred HHHHHHHH
Confidence 76666543
No 27
>PRK00295 hypothetical protein; Provisional
Probab=70.57 E-value=25 Score=28.84 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
+++.|.+++..+.--|-++..|...+-.-..+|..|+++|..+..+-+.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67789999999988899999999999999999999999998776554444
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.31 E-value=51 Score=32.57 Aligned_cols=49 Identities=12% Similarity=0.191 Sum_probs=32.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhh
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKR 206 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekr 206 (487)
..|+|..++.-+..+.+|+.+.+.=..++..++.+++.++..|..+.+.
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666777777777777777777777777777766654
No 29
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.66 E-value=27 Score=28.95 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHh
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKA 202 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~ 202 (487)
+.++++|.+++..+.=-|.++..|...+-.-..+|..|+++|..+..+-+.
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347889999999998889999999999999999999999999777554433
No 30
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.54 E-value=36 Score=35.60 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=57.1
Q ss_pred HHH-hhHHHHHHHhhc-----CCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHh
Q 038418 129 ELK-LLSELKQCYLKK-----QFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKA 202 (487)
Q Consensus 129 EL~-~Ls~LK~~y~~~-----~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~ 202 (487)
+|+ .|+++-..|++- ++|. ..+.|.=+|+-++..|...|.++-.|+.+++.|-.++.++|+.++.+......
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDN--ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDN--EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334 889999999973 3444 45667788888888888888888899999999988888888888877666555
Q ss_pred Hh
Q 038418 203 LE 204 (487)
Q Consensus 203 Le 204 (487)
|-
T Consensus 159 Lr 160 (302)
T PF09738_consen 159 LR 160 (302)
T ss_pred HH
Confidence 53
No 31
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.25 E-value=39 Score=35.29 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHHHHHHHHHHHHHHH
Q 038418 166 KTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTVLRHTVKSIRSFVR 245 (487)
Q Consensus 166 ~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~~A~~Sir~F~K 245 (487)
|-..+-+++-+..+..||+||++||.+|... -|.+|-.-.+ . --=.-+|++||+-|++. |
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RM------rEDWIEEECH--------R-----VEAQLALKEARkEIkQL-k 130 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARM------REDWIEEECH--------R-----VEAQLALKEARKEIKQL-K 130 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH------HHHHHHHHHH--------H-----HHHHHHHHHHHHHHHHH-H
Confidence 3344455777778888999999999999432 1333221110 0 00124788999999987 7
Q ss_pred HHHHHHHhc
Q 038418 246 LMIDELKSA 254 (487)
Q Consensus 246 lLi~~Mk~a 254 (487)
-.|.-||++
T Consensus 131 QvieTmrss 139 (305)
T PF15290_consen 131 QVIETMRSS 139 (305)
T ss_pred HHHHHHHhh
Confidence 778888874
No 32
>PRK14150 heat shock protein GrpE; Provisional
Probab=68.97 E-value=4.8 Score=39.24 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=38.5
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEec
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLS 481 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls 481 (487)
++..+.. .|..|||.++|-|..... + +..+-.|--.+-+|++++++||+ ++|.++
T Consensus 137 Gv~~i~~-~G~~FDP~~HeAv~~~~~-------------------~-~~~~gtI~~v~q~GY~l~drvLRpA~V~Vs 192 (193)
T PRK14150 137 GVEVVGP-VGEPFNPEVHQAISMQES-------------------E-DHEPNTVMMVMQKGYTLNGRLLRPAMVMVS 192 (193)
T ss_pred CCeeeCC-CCCCCCHhHcceeeeeCC-------------------C-CCCcCEEEEEeeCCeEeCCEEecceEEEeC
Confidence 3455554 599999999999864321 1 12345677889999999999997 455543
No 33
>PRK14151 heat shock protein GrpE; Provisional
Probab=68.16 E-value=6.3 Score=37.99 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=39.1
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEec
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLS 481 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls 481 (487)
++..+.. .|..|||.++|-|..... ++..+-.|.=.+-+|+++|++||+ ++|-++
T Consensus 119 Gv~~i~~-~G~~FDP~~HEAv~~~~~--------------------~~~~~gtI~~v~qkGY~l~dRvLRpA~V~Va 174 (176)
T PRK14151 119 QLEAVDP-HGEPFNPEHHQAMAMQES--------------------ADVEPNSVLKVFQKGYLLNGRLLRPAMVVVS 174 (176)
T ss_pred CCEEeCC-CCCCCCHHHhhcceeeCC--------------------CCCCcCeEEEEeeCCcEECCEEecCcEEEec
Confidence 4555655 699999999999864321 112345677888999999999987 455543
No 34
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=68.09 E-value=5.3 Score=36.30 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=36.4
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEEe
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQC 476 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVikc 476 (487)
++..+.+. |..|||.++|-|..... ++..+..|.=.+.|||++++.||+-
T Consensus 83 Gv~~i~~~-g~~FDp~~Heav~~~~~--------------------~~~~~~~I~~v~~~GY~~~~rvlRp 132 (137)
T cd00446 83 GVEKIEPE-GEPFDPNLHEAVMQVPS--------------------PDVEPGTVVEVLQKGYKLGDRVLRP 132 (137)
T ss_pred CCEEECCC-CCCCCHHHheeeeeecC--------------------CCCCcCEEEEEeecCeEECCEEecc
Confidence 45556554 77999999999865321 1123456888999999999999873
No 35
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.64 E-value=17 Score=34.06 Aligned_cols=59 Identities=31% Similarity=0.362 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhhHhHhhhhhc
Q 038418 151 KTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEI--IFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 151 ~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei--~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
...|..+|.+++.-++......+.|++++..=-++. ..|+..+.++...+..|+.||..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999988888888888888888777654 67888888888889999988765
No 36
>PRK04406 hypothetical protein; Provisional
Probab=67.51 E-value=28 Score=29.21 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 038418 153 MVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQN 200 (487)
Q Consensus 153 ~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n 200 (487)
.+++.|.+++..+.--|.++..|...+-.-.-+|..|+++|..+..+-
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999988899999999999999999999999997775433
No 37
>PRK00736 hypothetical protein; Provisional
Probab=66.97 E-value=31 Score=28.32 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
+.+.|.+++..+.--|-++..|...+-.-.-+|..|+++|..+..+-+.+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778999999988899999999999999999999999997776544443
No 38
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.89 E-value=42 Score=34.24 Aligned_cols=99 Identities=24% Similarity=0.374 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCCCCc-------hhHhH--hHHHHHHHHHhhH------HHHHHHhhcCCCCCchhh
Q 038418 88 AFLAKLFASISTVKSSYVQLQHAQSPYDA-------DGIQS--ADQLVVSELKLLS------ELKQCYLKKQFDFSPEKT 152 (487)
Q Consensus 88 ali~~lFa~VSslKaAY~qLQ~Ah~PyDp-------dkI~a--AD~~vVsEL~~Ls------~LK~~y~~~~~~~~~~~~ 152 (487)
.|-.++|...+++-- ..-.--.||-- |-|+. -.++|-+=|+.|- +||+.|..
T Consensus 73 eLA~kf~eeLrg~VG---hiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee---------- 139 (290)
T COG4026 73 ELAEKFFEELRGMVG---HIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEE---------- 139 (290)
T ss_pred HHHHHHHHHHHHhhh---hhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH----------
Confidence 355667776666532 23344567743 33321 1223334444443 55655543
Q ss_pred hHHHHHHH-HHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 153 MVSAEIQE-LKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 153 ~l~aei~e-~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
+.| ++.+.+..+.+++ ++..+.+|...+++.|.++...|+.|+..+.
T Consensus 140 -----~kekl~E~~~EkeeL~~----eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 140 -----LKEKLEELQKEKEELLK----ELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred -----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3333444444333 4455677788888888888888888876543
No 39
>PRK04325 hypothetical protein; Provisional
Probab=66.87 E-value=30 Score=28.85 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 153 MVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 153 ~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
.+.+.|.+++..+.=-|-++..|...+-.-.-+|..|+++|..+..+-+.+
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 377889999999988899999999999999999999999997775544333
No 40
>PRK14153 heat shock protein GrpE; Provisional
Probab=66.40 E-value=12 Score=36.82 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=41.2
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEeccCC
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLSPAR 484 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls~~~ 484 (487)
.+..+.+. |..|||.++|-|..... ++-.+-.|.=.+-+|++++++||+ ++|-++...
T Consensus 131 Gv~~I~~~-G~~FDP~~HEAv~~~~~--------------------~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~~ 189 (194)
T PRK14153 131 GLERIECE-GEEFDPHRHEAMMHVET--------------------SEVPDNTIVDVCKPGYALNSKVIRPAMVSVARNP 189 (194)
T ss_pred CCeeeCCC-CCCCChhHhceeeeeCC--------------------CCCCcCEEEEEeeCCcEeCCEEeeCcEEEECCCC
Confidence 45666654 99999999998864221 112345677888999999999997 577776543
No 41
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=66.39 E-value=20 Score=33.48 Aligned_cols=79 Identities=27% Similarity=0.298 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCCCchhHhHhHHHHHHHHH-hhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 038418 103 SYVQLQHAQSPYDADGIQSADQLVVSELK-LLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKL 181 (487)
Q Consensus 103 AY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~-~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~ 181 (487)
-|.-.|..=---+++.+..-|.- +.+|+ .|.+|+..... |.+++..+.+.+ +..+|..++..
T Consensus 58 iY~~~Q~~~~~~s~eel~~ld~e-i~~L~~el~~l~~~~k~-----------l~~eL~~L~~~~-----t~~el~~~i~~ 120 (169)
T PF07106_consen 58 IYFANQDELEVPSPEELAELDAE-IKELREELAELKKEVKS-----------LEAELASLSSEP-----TNEELREEIEE 120 (169)
T ss_pred EEeeCccccCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHH-----------HHHHHHHHhcCC-----CHHHHHHHHHH
Confidence 36667764433567888888877 56665 66666644443 333333333332 22334444444
Q ss_pred hhHHHHHHHHHHHHHHH
Q 038418 182 KDSEIIFLKEKLEESNK 198 (487)
Q Consensus 182 KDsei~~Lk~kL~e~~~ 198 (487)
-..||..|..+|+.+.+
T Consensus 121 l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 121 LEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44455555555544433
No 42
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=66.11 E-value=1.7e+02 Score=32.72 Aligned_cols=135 Identities=18% Similarity=0.279 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhhcCCCCchhHhHhHHHH---HHHHHhhHHHHHHHhhcCCCCCch-hhhHHHHHHHHHHhhhHHHHHHHH
Q 038418 99 TVKSSYVQLQHAQSPYDADGIQSADQLV---VSELKLLSELKQCYLKKQFDFSPE-KTMVSAEIQELKSLLKTYEIMGKK 174 (487)
Q Consensus 99 slKaAY~qLQ~Ah~PyDpdkI~aAD~~v---VsEL~~Ls~LK~~y~~~~~~~~~~-~~~l~aei~e~q~ll~tye~~~~k 174 (487)
.+..+--.|+.. |||.- ...-+.+ ..+|+.++.--+.|.. ..+..|. ...+..++..++.+.+.|...+.+
T Consensus 252 ~l~~~~~~l~~~---~d~~~-~~~~~~l~~~~~~l~d~~~~l~~~~~-~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~ 326 (563)
T TIGR00634 252 GLGEAQLALASV---IDGSL-RELAEQVGNALTEVEEATRELQNYLD-ELEFDPERLNEIEERLAQIKRLKRKYGASVEE 326 (563)
T ss_pred HHHHHHHHHHHh---hhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 444444455555 66543 3333322 3455544444445554 3344454 356778888888888888766555
Q ss_pred HHHHHhhhhHHHHHHHH---HHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHHHHHH-HHHHHHHHHHHHHH
Q 038418 175 LESQLKLKDSEIIFLKE---KLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTVLRHT-VKSIRSFVRLMIDE 250 (487)
Q Consensus 175 Le~e~~~KDsei~~Lk~---kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~~A-~~Sir~F~KlLi~~ 250 (487)
+-...+.-..++..|.. .++++...-..+++++... -..++.. .++...|++.+..+
T Consensus 327 l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~-------------------a~~Ls~~R~~~a~~l~~~v~~~ 387 (563)
T TIGR00634 327 VLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKA-------------------AVALSLIRRKAAERLAKRVEQE 387 (563)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 55444443333333222 2333333333333333221 1334444 34578888888888
Q ss_pred HHhcCCC
Q 038418 251 LKSAGWD 257 (487)
Q Consensus 251 Mk~agwD 257 (487)
|+.-|+.
T Consensus 388 l~~L~m~ 394 (563)
T TIGR00634 388 LKALAME 394 (563)
T ss_pred HHhCCCC
Confidence 8876653
No 43
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=65.17 E-value=61 Score=31.15 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 153 MVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 153 ~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
.|..+|..+...|+.....+..|+.|+.+=-.+...|.+++..+...|..|-+|.
T Consensus 127 ~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 127 QLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666677777777788999999999999999999999999999997774
No 44
>PRK14140 heat shock protein GrpE; Provisional
Probab=65.04 E-value=6.6 Score=38.44 Aligned_cols=53 Identities=15% Similarity=0.313 Sum_probs=36.8
Q ss_pred ceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEe
Q 038418 407 ASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYL 480 (487)
Q Consensus 407 a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYl 480 (487)
+..+- ..|..|||.++|-|..... ++..+-.|.-.+-+|+++|++||+ ++|-+
T Consensus 136 V~~i~-~~Ge~FDP~~HEAv~~~~~--------------------~~~~~gtVv~V~qkGY~l~dRVLRpA~V~V 189 (191)
T PRK14140 136 VEVIE-AVGEQFDPNLHQAVMQDED--------------------EDFESNEVVEELQKGYKLKDRVIRPSMVKV 189 (191)
T ss_pred CEeeC-CCCCCCChHHhccceeeCC--------------------CCCCcCeEEEEeeCCeEeCCEEecCcEEEe
Confidence 34443 4699999999998864221 112345677889999999999997 34543
No 45
>PRK02119 hypothetical protein; Provisional
Probab=64.23 E-value=39 Score=28.15 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQN 200 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n 200 (487)
..++++|.+++..+.--|-++..|...+-.-..+|..|+++|..+..+-
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999988899999999999999999999999987765433
No 46
>PRK14158 heat shock protein GrpE; Provisional
Probab=63.09 E-value=9 Score=37.58 Aligned_cols=54 Identities=15% Similarity=0.335 Sum_probs=37.4
Q ss_pred ceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEe
Q 038418 407 ASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYL 480 (487)
Q Consensus 407 a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYl 480 (487)
+..+....|..|||.+.|-|..... ++..+-.|.=.+-+|+++|++||+ ++|-+
T Consensus 138 v~~I~~~~G~~FDP~~HEAv~~~~~--------------------~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 192 (194)
T PRK14158 138 VTPVEAEKGTPFDPAYHQAMCQVES--------------------AEQEPNTVVAVFQKGYLLNERLLRPAMVSV 192 (194)
T ss_pred CEEecCCCCCCCChHHhhhheeecC--------------------CCCCcCEEEEEeeCCcEeCCEEeecceeEe
Confidence 4444444699999999997754221 112345688899999999999997 34543
No 47
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=62.74 E-value=1.4e+02 Score=33.32 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=48.4
Q ss_pred HHHHHhhHHHHHHHHHhh---------cCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHH-
Q 038418 93 LFASISTVKSSYVQLQHA---------QSPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELK- 162 (487)
Q Consensus 93 lFa~VSslKaAY~qLQ~A---------h~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q- 162 (487)
+-.....+..+|.+|+.+ ..=|||+.+.. +-+.|..+-.|++.|... ...+...+++.+
T Consensus 268 ~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e----le~RL~~l~~LkrKyg~s-------~e~l~~~~~~l~~ 336 (563)
T TIGR00634 268 LRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE----IEERLAQIKRLKRKYGAS-------VEEVLEYAEKIKE 336 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHH
Confidence 344556677777777754 56788888765 445666677777666631 111222222222
Q ss_pred --HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 163 --SLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 163 --~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
..+..++..+++|+.++..-..+...+-++|...
T Consensus 337 eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 337 ELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233334445555555554444444444444433
No 48
>PRK00846 hypothetical protein; Provisional
Probab=62.44 E-value=44 Score=28.45 Aligned_cols=52 Identities=15% Similarity=0.005 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHh
Q 038418 153 MVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALE 204 (487)
Q Consensus 153 ~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Le 204 (487)
.+.+.|.+++..+.--|.++..|...+-.-..+|..|+++|.-+..+-+.++
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999888999999999999999999999999977766555444
No 49
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=62.43 E-value=57 Score=34.12 Aligned_cols=41 Identities=44% Similarity=0.519 Sum_probs=26.2
Q ss_pred HHHHHHHHHhh---hHHHHH--HHHHHHHHhhhhH--HHHHHHHHHHH
Q 038418 155 SAEIQELKSLL---KTYEIM--GKKLESQLKLKDS--EIIFLKEKLEE 195 (487)
Q Consensus 155 ~aei~e~q~ll---~tye~~--~~kLe~e~~~KDs--ei~~Lk~kL~e 195 (487)
+.||.|+++-| +.=||- --+.|+|+..|++ ||..||+-++-
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieT 135 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIET 135 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677766543 333333 4467888888877 78888877753
No 50
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=61.24 E-value=39 Score=31.40 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
|.++....+.....++..++.|+.+...++-||..|..++..+...--.++.+|.
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677777777778888888888888888887777766665555555544
No 51
>PRK14144 heat shock protein GrpE; Provisional
Probab=60.66 E-value=8.6 Score=37.94 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=38.2
Q ss_pred ceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEec
Q 038418 407 ASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLS 481 (487)
Q Consensus 407 a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls 481 (487)
+..+.. .|..|||.++|-|..... ++..+-.|.-.+-+|++++++||+ ++|-++
T Consensus 143 V~~I~~-~G~~FDP~~HEAv~~~~~--------------------~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vs 197 (199)
T PRK14144 143 VEQIDP-LGQTFDPQQHEAMSMQPA--------------------PGAPPNSVITVFQKGYKLSDRVIRPARVIVS 197 (199)
T ss_pred CEEeCC-CCCCCChhHhceeeeeCC--------------------CCCCcCeEEEEeeCCcEECCEEecccEEEec
Confidence 444443 599999999999864321 112345688899999999999997 455543
No 52
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=60.58 E-value=37 Score=29.64 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 167 TYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 167 tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
.|+..+++|+.++..--.|+..|+.+|+-....
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888999999999999999999999765443
No 53
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=60.57 E-value=79 Score=35.43 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 134 SELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 134 s~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
-.|.+.|+.-..|... +.+-+.-..+.++.|--.+++|+.++..|++||..|+.+.+++..+
T Consensus 298 ~~l~ek~r~l~~D~nk----~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 298 KTLREKWRALKSDSNK----YENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHHHHHhhhHHH----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3466667765445442 3333344455566677778999999999999999999999988653
No 54
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=60.48 E-value=48 Score=27.05 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhHhHhhh
Q 038418 187 IFLKEKLEESNKQNKALEKR 206 (487)
Q Consensus 187 ~~Lk~kL~e~~~~n~~Lekr 206 (487)
..+..+|.++..+|+.|+..
T Consensus 28 ~~~e~kLqeaE~rn~eL~~e 47 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELEQE 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666555543
No 55
>PHA02562 46 endonuclease subunit; Provisional
Probab=59.98 E-value=2.2e+02 Score=30.97 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHH
Q 038418 80 LEYRISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQ 159 (487)
Q Consensus 80 ~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~ 159 (487)
..+...++..+..|=..+..+..+..++|.... . .++ ..+++.++++..... ...|.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~-----~---~~~----~~~~i~el~~~i~~~-----------~~~i~ 354 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMD-----E---FNE----QSKKLLELKNKISTN-----------KQSLI 354 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---HHH----HHHHHHHHHHHHHHH-----------HHHHH
Confidence 446666667788888888888888887776543 1 111 134555555544432 22234
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 160 ELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 160 e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
+...-.+..+.-+.+|+.+......++..|..+|+++......+++..
T Consensus 355 ~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 355 TLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666677777766666777777777777777666666553
No 56
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=59.91 E-value=3.8 Score=35.62 Aligned_cols=16 Identities=44% Similarity=0.941 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhhccC
Q 038418 389 MAKRVWLLHCLAFSFD 404 (487)
Q Consensus 389 mAksVWLLH~LAfSf~ 404 (487)
||+++|+|-+||.++-
T Consensus 1 MaRRlwiLslLAVtLt 16 (100)
T PF05984_consen 1 MARRLWILSLLAVTLT 16 (100)
T ss_pred CchhhHHHHHHHHHHH
Confidence 8999999999998865
No 57
>PRK14145 heat shock protein GrpE; Provisional
Probab=59.85 E-value=9.2 Score=37.62 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=36.3
Q ss_pred ceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEEe-EEE
Q 038418 407 ASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQC-QVY 479 (487)
Q Consensus 407 a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVikc-rVY 479 (487)
+.-+.. .|..|||.+.|-|..... ++..+-.|.=.+-+|+++|++||+- +|-
T Consensus 141 Ve~I~~-~Ge~FDP~~HEAv~~~~~--------------------~~~~~gtVv~V~qkGY~l~dRVLRPA~V~ 193 (196)
T PRK14145 141 VKEIEA-EGQIFDPYKHHAVMQEEV--------------------EGKQPNEIIEVFQKGYYLKDKVIRPSLVK 193 (196)
T ss_pred CEEeCC-CCCCCCchhhheeeeeCC--------------------CCCCcCEEEEEeeCCcEeCCEeeccceEE
Confidence 334443 599999999998864321 1123456778899999999999973 443
No 58
>PRK14161 heat shock protein GrpE; Provisional
Probab=59.48 E-value=12 Score=36.25 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=38.4
Q ss_pred ceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEec
Q 038418 407 ASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLS 481 (487)
Q Consensus 407 a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls 481 (487)
+..+....|..|||.+.|-|..... ++..+-.|.=.+-+|++++++||+ ++|-++
T Consensus 120 v~~I~~~~G~~FDP~~HEAv~~~~~--------------------~~~~~gtVi~v~q~GY~l~dRVLRpA~V~Va 175 (178)
T PRK14161 120 IEEIKPEIGSMFDYNLHNAISQIEH--------------------PDHAPNSIITLMQSGYKIRDRLLRPATVQVV 175 (178)
T ss_pred CEEecCCCCCCCChHHhhhheeeCC--------------------CCCCcCEEEEEeeCCcEeCCEeecCceEEeC
Confidence 4444444599999999998875321 112345688889999999999997 455444
No 59
>PRK14160 heat shock protein GrpE; Provisional
Probab=59.27 E-value=11 Score=37.42 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=35.3
Q ss_pred ceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEEe-EEEe
Q 038418 407 ASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQC-QVYL 480 (487)
Q Consensus 407 a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVikc-rVYl 480 (487)
+.-+.. .| .|||.+.|-|..... ++..+..|.-.+-||+++|++||+. +|-+
T Consensus 157 Ve~I~~-~G-~FDP~~HEAv~~~~~--------------------~e~~~gtVveV~qkGY~l~dRVLRpA~V~V 209 (211)
T PRK14160 157 VEEIST-EG-EFDPNLHNAVMHVED--------------------ENYGENEIVEVFQKGYKRGDKVIRYSMVKV 209 (211)
T ss_pred CEEeCC-CC-CCChHHhceeeeeCC--------------------CCCCcCeEEEEeeCCcEeCCEeeecceEEe
Confidence 344444 37 899999998865321 1123456778899999999999984 4443
No 60
>PRK14154 heat shock protein GrpE; Provisional
Probab=59.14 E-value=12 Score=37.19 Aligned_cols=55 Identities=18% Similarity=0.381 Sum_probs=38.5
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEe
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYL 480 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYl 480 (487)
.+..+....|..|||.+.|-|..... + +..+-.|.=.+-+||+++++||+ ++|-+
T Consensus 151 GVe~I~~~~G~~FDP~~HEAv~~~~~-------------------~-~~~~gtVveV~qkGY~l~dRVLRPA~V~V 206 (208)
T PRK14154 151 GVQVINPNPGDPFDPALHEAMSVQAV-------------------P-DAKPDTIIQVLQKGYQLNGRVLRAARVIV 206 (208)
T ss_pred CCEEecCCCCCCCChhHhheeeeeCC-------------------C-CCCcCEEEEEeeCCcEeCCEEecceEEEe
Confidence 34445555699999999999864321 1 11244688899999999999997 45544
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=58.77 E-value=2.1e+02 Score=31.13 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 038418 154 VSAEIQELKSLLKTYEIMGK 173 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~ 173 (487)
+..+++++++-++.++..+.
T Consensus 304 l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 62
>PRK14148 heat shock protein GrpE; Provisional
Probab=58.57 E-value=10 Score=37.29 Aligned_cols=55 Identities=13% Similarity=0.208 Sum_probs=38.4
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEec
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLS 481 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls 481 (487)
++..+.. .|..|||.+.|-|...... +-.+-.|.=.+-+|+++|++||+ ++|.++
T Consensus 138 Gv~~I~~-~G~~FDP~~HEAv~~~~~~--------------------~~~~gtVv~V~qkGY~l~dRVLRpA~V~Va 193 (195)
T PRK14148 138 GVEELDP-KGEKFDPNLHEAMAMIPNP--------------------EFEDNTIFDVFQKGYMLNGRIVRAAKVVIV 193 (195)
T ss_pred CCEEeCC-CCCCCChhHhheeeeeCCC--------------------CCCcCEEEEEeeCCcEeCCEeeeccEEEeC
Confidence 3444554 4999999999998753211 12345677889999999999997 455543
No 63
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=57.99 E-value=37 Score=32.33 Aligned_cols=34 Identities=32% Similarity=0.264 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 165 LKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 165 l~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
.+.++..+++|+.|+..++.|++.||++.+.+++
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566677888888888888888888776643
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.42 E-value=51 Score=38.20 Aligned_cols=44 Identities=30% Similarity=0.194 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 155 SAEIQELKSLLKTYEIM---GKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 155 ~aei~e~q~ll~tye~~---~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
.||=.--+.|...+... ++-++.+++.||.||..||.||.++..
T Consensus 611 saEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 611 SAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555444 556678999999999999999999865
No 65
>PRK14147 heat shock protein GrpE; Provisional
Probab=57.20 E-value=9.9 Score=36.51 Aligned_cols=54 Identities=13% Similarity=0.221 Sum_probs=37.8
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEEe-EEEe
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQC-QVYL 480 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVikc-rVYl 480 (487)
++..+.. .|..|||.+.|-|..... ++..+..|.=.+-+|+++|+.||+. +|-+
T Consensus 114 Gv~~i~~-~G~~FDP~~HeAv~~~~~--------------------~~~~~g~Vv~v~qkGY~l~~RvLRpA~V~V 168 (172)
T PRK14147 114 GLTLLDP-VGQPFNPEHHQAISQGEA--------------------EGVAPGHVVQVFQKGYLLNERLLRPALVVV 168 (172)
T ss_pred CCEEeCC-CCCCCChHHhceeeeecC--------------------CCCCcCEEEEEeeCCcEeCCEeccCceEEe
Confidence 3455554 599999999999865321 1123446778999999999999974 4443
No 66
>PRK14162 heat shock protein GrpE; Provisional
Probab=55.73 E-value=13 Score=36.61 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=36.6
Q ss_pred ceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEEe-EEEe
Q 038418 407 ASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQC-QVYL 480 (487)
Q Consensus 407 a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVikc-rVYl 480 (487)
+..+.. .|..|||.+.|-|..... +++..+-.|.=.+-+|+++|++||+. +|-+
T Consensus 138 V~~I~~-~G~~FDP~~HEAv~~~~~-------------------~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 192 (194)
T PRK14162 138 VTEIKA-DGEKFDPTLHQAVQTVAA-------------------ENDDQKDHVVQVLQKGYQYKDRTLRPAMVVV 192 (194)
T ss_pred CEEeCC-CCCCCChhHhhhheeecC-------------------CCCCCcCEEEEEeeCCcEeCCEeeecceEEe
Confidence 344443 599999999999864221 11123455778889999999999984 4544
No 67
>PRK14141 heat shock protein GrpE; Provisional
Probab=55.67 E-value=11 Score=37.34 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=39.2
Q ss_pred ceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEecc
Q 038418 407 ASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLSP 482 (487)
Q Consensus 407 a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls~ 482 (487)
+..+.. .|..|||.+.|-|..... ++-.+-.|.=.+-+|++++++||+ ++|-++.
T Consensus 136 V~~I~~-~Ge~FDP~~HEAv~~~~~--------------------~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vsk 191 (209)
T PRK14141 136 VKKLDP-EGQKFDPNFHQAMFEVPN--------------------PDVPNNTVVQVVQAGYTIGERVLRPAMVGVAK 191 (209)
T ss_pred CEEECC-CCCCCChHHhceeeeecC--------------------CCCCcCEEEEEeeCCcEeCCEeecccEEEECC
Confidence 444443 599999999998864221 112345677889999999999997 5677765
No 68
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.30 E-value=1.2e+02 Score=31.49 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
..+..+++++..++..||.+.+.|+++...++.=|..|+.+.+.+...-..|++
T Consensus 165 ~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~ 218 (265)
T COG3883 165 AALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALEE 218 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 447788899999999999999999999999999999999999888777766663
No 69
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=55.09 E-value=19 Score=35.66 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 171 MGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 171 ~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
.++..++|+-.|++||..||..|.++...+...+.++.
T Consensus 18 QLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~ 55 (202)
T PF06818_consen 18 QLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQ 55 (202)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45788888999999999999998888777766666544
No 70
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=54.98 E-value=50 Score=32.30 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 151 KTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 151 ~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
......||.-++..++-+......++..++.+|.+|..++.+|..+..
T Consensus 63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 63 LQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999999999999999999998887644
No 71
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.51 E-value=1.7e+02 Score=29.05 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
..|.++++.+..-++..+...++|++.+.....+|..|.++++++..-...+
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666677777777777777777777777665544433
No 72
>PRK10325 heat shock protein GrpE; Provisional
Probab=54.32 E-value=12 Score=36.70 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=38.5
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEecc
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLSP 482 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls~ 482 (487)
++..+. ..|..|||.+.|-|..... + +..+..|.=.+-+|+++|++||+ ++|-++.
T Consensus 138 Gv~~i~-~~G~~FDP~~HEAv~~~~~-------------------~-~~~~~~Vv~v~qkGY~l~drvlRpA~V~Vsk 194 (197)
T PRK10325 138 GVEVIA-ETNVPLDPNVHQAIAMVES-------------------D-DVAPGNVLGIMQKGYTLNGRTIRAAMVTVAK 194 (197)
T ss_pred cCeeeC-CCCCCCChhHhceeeeeCC-------------------C-CCCcCeEEEEeeCCcEeCCEeccCceEEeCC
Confidence 344444 3699999999999865321 1 11234566788999999999997 5666653
No 73
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.35 E-value=59 Score=32.13 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=9.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Q 038418 174 KLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 174 kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
+|+..+...+.+|..|+++.+++
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333
No 74
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=52.96 E-value=57 Score=32.96 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038418 169 EIMGKKLESQLKLKDSEIIFLKEKLEESN 197 (487)
Q Consensus 169 e~~~~kLe~e~~~KDsei~~Lk~kL~e~~ 197 (487)
|-.++-||+++..||.+|..|.+.|.++.
T Consensus 73 e~~m~~Lea~VEkrD~~IQqLqk~LK~aE 101 (272)
T KOG4552|consen 73 EQLMRTLEAHVEKRDEVIQQLQKNLKSAE 101 (272)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55568899999999999999999998874
No 75
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=52.79 E-value=1.3e+02 Score=24.88 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=51.6
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 126 VVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 126 vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
.-.+|..|-..+..|... ...... ..-.+.+...+.-+...+..+..++.++..-+.++..+++.|.++...-+.+++
T Consensus 17 ~~~~l~~L~~~~~~~~~~-~~~~~~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~ 94 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQ-LSESQQ-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEK 94 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HhhccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666667777542 222121 334456666777777778888888888888888888888888888776666653
No 76
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=52.42 E-value=1.7e+02 Score=32.29 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKL 193 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL 193 (487)
|+++|.++..-+++-+..+.+.+.++...+..|..+...|
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 4444444444444444433333333333333333333333
No 77
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=52.12 E-value=68 Score=31.93 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
...++.+++.-+.+-..-++.++.|+..+.+|+..||+++..+......|-.-+..
T Consensus 50 ~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 50 KESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred hHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 56778888888888888999999999999999999999999988888777554433
No 78
>PRK14155 heat shock protein GrpE; Provisional
Probab=52.09 E-value=18 Score=35.86 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=41.4
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEeccC
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLSPA 483 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls~~ 483 (487)
.+..+....|..|||.+.|-|..... ++-.+-.|.=.+-+|++++++||+ ++|-++..
T Consensus 114 GV~~I~~~~G~~FDP~~HEAv~~~~~--------------------~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~ 172 (208)
T PRK14155 114 GLKKIDPAKGDKFDPHLHQAMMEQPS--------------------TEVAAGGVLQVMQAGYELMGRLVRPAMVAVAAK 172 (208)
T ss_pred CCceecCCCCCCCChhHhceeeeecC--------------------CCCCcCeEEEEeeCCeEeCCEeeccceEEECCC
Confidence 45555555799999999998764321 112345677889999999999997 56766643
No 79
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=51.53 E-value=3e+02 Score=32.54 Aligned_cols=45 Identities=24% Similarity=0.177 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 038418 156 AEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQN 200 (487)
Q Consensus 156 aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n 200 (487)
.++.+++..+...+..+..|+.++.....++..+++++.++....
T Consensus 420 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 464 (1164)
T TIGR02169 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL 464 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555455555555554444333
No 80
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=51.43 E-value=2.1e+02 Score=26.83 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=13.7
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 038418 162 KSLLKTYEIMGKKLESQLKLKDSEIIFLK 190 (487)
Q Consensus 162 q~ll~tye~~~~kLe~e~~~KDsei~~Lk 190 (487)
++.++.++.-++.++...+....++..|+
T Consensus 122 ~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 122 RELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 81
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.53 E-value=1.1e+02 Score=28.90 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=26.6
Q ss_pred HhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHh
Q 038418 108 QHAQSPYDADGIQSADQLVVSELKLLSELKQCYL 141 (487)
Q Consensus 108 Q~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~ 141 (487)
|....|..||+.+++|.+.=.=-.+...||+.-.
T Consensus 38 ~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~ 71 (143)
T PRK11546 38 QQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLV 71 (143)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999988777777777775444
No 82
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=50.36 E-value=1.8e+02 Score=30.05 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=30.5
Q ss_pred HhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhh
Q 038418 108 QHAQSPYDADGIQSADQLVVSELKLLSELKQCYLK 142 (487)
Q Consensus 108 Q~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~ 142 (487)
+.||+=-||-++=+||-.-|.||-+++.+=....+
T Consensus 62 tKa~IKLN~KkLY~ADGyAVkELLKia~lLy~A~~ 96 (267)
T PF10234_consen 62 TKARIKLNPKKLYQADGYAVKELLKIASLLYSAMK 96 (267)
T ss_pred HHhheeecHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999988544444
No 83
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=50.14 E-value=63 Score=30.50 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=13.8
Q ss_pred HHHHHHhhHHHHHHHhh
Q 038418 126 VVSELKLLSELKQCYLK 142 (487)
Q Consensus 126 vVsEL~~Ls~LK~~y~~ 142 (487)
++.-..+|+.|+++|..
T Consensus 18 ~~~~~~kl~kl~r~Y~~ 34 (151)
T PF14584_consen 18 IIILNIKLRKLKRRYDA 34 (151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34667799999999997
No 84
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=49.01 E-value=2.1e+02 Score=25.96 Aligned_cols=105 Identities=25% Similarity=0.301 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhh
Q 038418 87 EAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLK 166 (487)
Q Consensus 87 eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~ 166 (487)
+....++-....-++.=-...+.||-=|.-+-+.-|+. ++.|..||.-+-. +..+|.+++.-..
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-----~~~L~~lr~e~~~-----------~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED-----IKELQQLREELQE-----------LQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 34455555556666666677788888888887777765 3455556554443 3334444444443
Q ss_pred HHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 167 TYEIMGKKLE----SQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 167 tye~~~~kLe----~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
+-...+...+ .+-..=+.+|..++..++++..+|+-|=..|
T Consensus 84 ~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 84 SAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332 2333334588899999999999998886554
No 85
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=48.90 E-value=1.4e+02 Score=29.79 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhHhHhhhhhcc
Q 038418 184 SEIIFLKEKLEESNKQNKALEKRMNQS 210 (487)
Q Consensus 184 sei~~Lk~kL~e~~~~n~~Lekrl~~s 210 (487)
.++.+.+.+|+.++.+.+.|++|+.-+
T Consensus 169 ~~L~~v~~eIe~~~~~~~~l~~~v~~s 195 (262)
T PF14257_consen 169 RELSRVRSEIEQLEGQLKYLDDRVDYS 195 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhceE
Confidence 356666677777777777888876544
No 86
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=48.48 E-value=50 Score=31.51 Aligned_cols=31 Identities=32% Similarity=0.482 Sum_probs=27.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 179 LKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 179 ~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
.+.||.|+..|..+|.+...+.+.||++|..
T Consensus 100 AkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~e 130 (152)
T PF11500_consen 100 AKKKDAEAMRLAEKLKEEQEKVAEMERHVTE 130 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999998755
No 87
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=48.19 E-value=62 Score=35.47 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=28.8
Q ss_pred HhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHhhHhH
Q 038418 131 KLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDS-------EIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 131 ~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDs-------ei~~Lk~kL~e~~~~n~~L 203 (487)
++|...++-+-+ +..+|.+++.-....+..+++|+.++..=+. ++..+++.|++++..-..|
T Consensus 38 ~~l~q~q~ei~~-----------~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAA-----------LEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 555555544443 3344444444444444444444444444444 4444444444444433333
No 88
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=48.12 E-value=4.1e+02 Score=29.87 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=28.8
Q ss_pred H-HHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHH
Q 038418 94 F-ASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELK 131 (487)
Q Consensus 94 F-a~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~ 131 (487)
| +-+.-|+.+|-+|...|..++...|..-=+.+-.+|.
T Consensus 228 ~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~ 266 (569)
T PRK04778 228 LPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQID 266 (569)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Confidence 6 7888899999999999999998876654333444443
No 89
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.00 E-value=2.4e+02 Score=31.03 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=32.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
+.+...++..|.....+|..+++.-+.++..|+++|+++..+-..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456667777777777777777777777777777777776554444
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=47.39 E-value=3.1e+02 Score=27.62 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 156 AEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 156 aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
.++++++.........+..++.|+..--..|..|+.+|+.+...|..|++++..
T Consensus 195 ~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 195 SKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 344444444444455555555666666666666677777777778888877653
No 91
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=46.98 E-value=1.6e+02 Score=25.97 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=45.6
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHh
Q 038418 125 LVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALE 204 (487)
Q Consensus 125 ~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Le 204 (487)
..-..|..|.+.+..|...-. ..+....-...+...+.-+......+...+.++..-..++...++.|.++...-+.+|
T Consensus 31 ~~~~~l~~l~~~~~~~~~~~~-~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~le 109 (141)
T TIGR02473 31 RLETQLQQLIKYREEYEQQAL-EKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALE 109 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777764210 0000001112344445555555666666666666677777777777777776666665
Q ss_pred h
Q 038418 205 K 205 (487)
Q Consensus 205 k 205 (487)
+
T Consensus 110 k 110 (141)
T TIGR02473 110 K 110 (141)
T ss_pred H
Confidence 4
No 92
>PRK14139 heat shock protein GrpE; Provisional
Probab=46.71 E-value=21 Score=34.82 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=38.7
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEec
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLS 481 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls 481 (487)
.+..+.. .|..|||.++|-|..... +..+-.|.=.+-+|+++|++||+ ++|-++
T Consensus 128 Gv~~I~~-~G~~FDP~~HEAv~~~~~---------------------~~~~gtVi~V~qkGY~l~dRVLRPA~V~Va 182 (185)
T PRK14139 128 RVVEINP-VGEKFDPHQHQAISMVPA---------------------EQEPNTVVAVLQKGYTIADRVLRPALVTVA 182 (185)
T ss_pred CCceeCC-CCCCCChHHhheeeeecC---------------------CCCcCEEEEEeeCCcEeCCEeccCceEEeC
Confidence 3445555 599999999999864321 11245688889999999999997 455554
No 93
>PRK09039 hypothetical protein; Validated
Probab=46.70 E-value=2.8e+02 Score=29.34 Aligned_cols=15 Identities=7% Similarity=0.324 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 038418 238 KSIRSFVRLMIDELK 252 (487)
Q Consensus 238 ~Sir~F~KlLi~~Mk 252 (487)
.-+..|..-+...|+
T Consensus 190 ~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 190 QELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHhHHHHHHHHH
Confidence 345566666666665
No 94
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.24 E-value=35 Score=34.90 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcC
Q 038418 242 SFVRLMIDELKSAG 255 (487)
Q Consensus 242 ~F~KlLi~~Mk~ag 255 (487)
++-+.+|+++..+|
T Consensus 139 ~dl~~viNeL~~sG 152 (247)
T COG3879 139 DDLQAVINELNISG 152 (247)
T ss_pred HHHHHHHHHHHhcc
Confidence 45678888998887
No 95
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=45.98 E-value=2.9e+02 Score=33.88 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=17.3
Q ss_pred hhHhHhHHHHHHHHHhhHHHHHHHhh
Q 038418 117 DGIQSADQLVVSELKLLSELKQCYLK 142 (487)
Q Consensus 117 dkI~aAD~~vVsEL~~Ls~LK~~y~~ 142 (487)
+.|..|=+.|..=.+...+++..|+.
T Consensus 337 ~Ei~~~r~~~~~~~re~~~~~~~~~~ 362 (1074)
T KOG0250|consen 337 EEIEEARKDLDDLRREVNDLKEEIRE 362 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666777766665
No 96
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.65 E-value=1.7e+02 Score=36.11 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHH--HHHHhhHH
Q 038418 83 RISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVV--SELKLLSE 135 (487)
Q Consensus 83 ~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vV--sEL~~Ls~ 135 (487)
...++....++=..-.++++.-..+|..-.||..+.+++.-++=| |||+-|..
T Consensus 460 ~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~ 514 (1293)
T KOG0996|consen 460 ERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLS 514 (1293)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777888999999999999999999999999998888 45554443
No 97
>PRK14157 heat shock protein GrpE; Provisional
Probab=45.20 E-value=20 Score=36.13 Aligned_cols=49 Identities=22% Similarity=0.464 Sum_probs=36.5
Q ss_pred CCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEecc
Q 038418 414 KGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLSP 482 (487)
Q Consensus 414 rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls~ 482 (487)
.|..|||.+-|-|..... .+..+-.|.=.+-+|++++++||+ ++|-++.
T Consensus 175 ~Ge~FDP~~HEAV~~~~~--------------------~~~~~gtVi~V~QkGY~l~dRVLRPA~V~Vak 224 (227)
T PRK14157 175 KGEDFDPTKHDAILHKPD--------------------PDAEKETVDTVVEAGYRIGDRVIRAARVVVAS 224 (227)
T ss_pred CCCCCChhhhceeeeecC--------------------CCCCcCEEEEEeeCCceeCCEeccCceEEeCC
Confidence 599999999998864321 112356788899999999999998 4665554
No 98
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=44.72 E-value=4e+02 Score=28.10 Aligned_cols=135 Identities=18% Similarity=0.233 Sum_probs=84.5
Q ss_pred HHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCC----CCCchh----hhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 038418 107 LQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLKKQF----DFSPEK----TMVSAEIQELKSLLKTYEIMGKKLESQ 178 (487)
Q Consensus 107 LQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~----~~~~~~----~~l~aei~e~q~ll~tye~~~~kLe~e 178 (487)
||.|-+--+|-|+=+||..-|+||...-.| .|--++- |.+|+. +.+...|+|+|.. ..|-++
T Consensus 2 ~~~a~i~~np~kly~a~~~~~~el~~~~~l--l~~~~~~~~~~d~~~~~~q~~~~i~~k~~e~r~~--------r~lat~ 71 (338)
T KOG3647|consen 2 VTKAAIRINPRKLYAAAAVTAAELQKVTRL--LTSPGQNEADNDEEDQRDQYRSLIGDKIEELRKA--------RELATD 71 (338)
T ss_pred CcchhhccCHHHHHHHhHHHHHHHHHHHHH--HhCcCcCCCCCCcchHHHHHHHHHHHHHHHHHHH--------HHHHhh
Confidence 467788899999999999999999988776 4543222 333442 5677888887754 677788
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 038418 179 LKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTVLRHTVKSIRSFVRLMIDELKSAGWDI 258 (487)
Q Consensus 179 ~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~~A~~Sir~F~KlLi~~Mk~agwDl 258 (487)
+-.+-.-|.+|-.+- .+.+ ..++.-+ .+. +-...-..+++.|...|..=+..+-.++.+...|.
T Consensus 72 l~~~g~~i~e~ls~~-~~~~--~~~~~aa--~Rp-----------lel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasde 135 (338)
T KOG3647|consen 72 LTQRGTTICEMLSKE-LLHK--ESLMSAA--QRP-----------LELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDE 135 (338)
T ss_pred ccccchHHHHHHHHH-HHHH--HHHHHHH--cCC-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 888877766553221 1111 1111111 111 11123347788888888777777778888877776
Q ss_pred HHHhhhcCC
Q 038418 259 DAAANSIQP 267 (487)
Q Consensus 259 ~aaa~si~p 267 (487)
.+--.-|+.
T Consensus 136 a~L~~Kier 144 (338)
T KOG3647|consen 136 AALGSKIER 144 (338)
T ss_pred HHHHHHHHH
Confidence 554434543
No 99
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=44.56 E-value=70 Score=35.49 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=34.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
+.+|+.....++.+-+.++.++.++|.+|..|.++|.++.-
T Consensus 409 ~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 409 IKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 44556666778888888899999999999999999999843
No 100
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.36 E-value=3.2e+02 Score=32.57 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----hcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhh
Q 038418 79 ELEYRISLEAFLAKLFASISTVKSSYVQLQH-----AQSPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTM 153 (487)
Q Consensus 79 ~~~~~~~~eali~~lFa~VSslKaAY~qLQ~-----Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~ 153 (487)
..+.++.|++.+.-+---|-+..+.|.+||. +|+ -+..-||--+-|--+.+++|+++.-+ +...|..
T Consensus 621 L~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i----~~~~fa~ID~~Sa~rqIael~~~lE~--L~~t~~~-- 692 (1104)
T COG4913 621 LRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHI----QALNFASIDLPSAQRQIAELQARLER--LTHTQSD-- 692 (1104)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HhcchhhcchhhHHHHHHHHHHHHHH--hcCChhH--
Confidence 4456788888888888889999999999996 232 22233444444555566666655543 2222221
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
|+-.+.-+..-++..+-||.+.++--.|...+|+.|+.+..
T Consensus 693 ----~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~ 733 (1104)
T COG4913 693 ----IAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAM 733 (1104)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223334455666677888888888899999998877644
No 101
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.75 E-value=1e+02 Score=30.18 Aligned_cols=18 Identities=39% Similarity=0.375 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 038418 183 DSEIIFLKEKLEESNKQN 200 (487)
Q Consensus 183 Dsei~~Lk~kL~e~~~~n 200 (487)
|++|..|..+|.++.++.
T Consensus 130 e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQA 147 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555543
No 102
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.51 E-value=5.1e+02 Score=28.91 Aligned_cols=120 Identities=24% Similarity=0.281 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhc-CCCCCch---hhhHHH
Q 038418 81 EYRISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLKK-QFDFSPE---KTMVSA 156 (487)
Q Consensus 81 ~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~-~~~~~~~---~~~l~a 156 (487)
..++.-|-++..|=++||-.++ -+|+|+| .+..|-+-|-.|+.+|-...+..... .+...++ .-.+-+
T Consensus 338 ~~~q~sE~ll~tlq~~iSqaq~-~vq~qma-------~lv~a~e~i~~e~~rl~q~nd~l~~~~~l~t~~Qq~e~~~lp~ 409 (542)
T KOG0993|consen 338 EERQHSEDLLVTLQAEISQAQS-EVQKQMA-------RLVVASETIADEDSRLRQINDLLTTVGELETQVQQAEVQNLPA 409 (542)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHhhhhcchh
Confidence 3445556678888888988876 5888987 46677778888999999999888864 3333344 123444
Q ss_pred HHHHHHHhhhHH-HHHHHHHHHHH-hhh--hHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 157 EIQELKSLLKTY-EIMGKKLESQL-KLK--DSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 157 ei~e~q~ll~ty-e~~~~kLe~e~-~~K--Dsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
-+.+++.+++-| +.....|.+.- -+. -.||..|++.|+........||..+.
T Consensus 410 ave~l~ql~~~~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~le~ql~ 465 (542)
T KOG0993|consen 410 AVEQLAQLYKQRRTSLQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQELEWQLD 465 (542)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665544 33333443321 111 14889999999988877777776543
No 103
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=43.00 E-value=2.3e+02 Score=32.17 Aligned_cols=47 Identities=19% Similarity=0.083 Sum_probs=26.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 157 EIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 157 ei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
.+++++..++.++..+.+++.++.....+|..++++++++.+.-.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555566666666666666666666665554433333
No 104
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.51 E-value=72 Score=35.51 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Q 038418 171 MGKKLESQLKLKDSEIIFLKEKLE 194 (487)
Q Consensus 171 ~~~kLe~e~~~KDsei~~Lk~kL~ 194 (487)
..+++|+.|+..++|+..|+.+++
T Consensus 98 q~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 98 QRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777773
No 105
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=42.04 E-value=1.3e+02 Score=24.55 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 155 SAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 155 ~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
..++.+....++..+..+.+||.....-+.+|..+.+.|+++...++=+
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~ 53 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWI 53 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666777778888888888888888888888887766443
No 106
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.00 E-value=1.2e+02 Score=26.83 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhHhHhhh
Q 038418 168 YEIMGKKLESQLKLK--DSEIIFLKEKLEESNKQNKALEKR 206 (487)
Q Consensus 168 ye~~~~kLe~e~~~K--Dsei~~Lk~kL~e~~~~n~~Lekr 206 (487)
.+..+.++|.+++.- ..++..|+-.|.+....-+.++.+
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSAR 87 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333334444444443 334444444444444333333333
No 107
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.46 E-value=1.5e+02 Score=31.04 Aligned_cols=90 Identities=17% Similarity=0.276 Sum_probs=46.7
Q ss_pred CCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 038418 113 PYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEK 192 (487)
Q Consensus 113 PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~k 192 (487)
-|+|+.|..+=.+.-+=..=+-.+- .|.+-.-...| +..++.+.+.-++.-+..+++.+.++..-+.++..|+.+
T Consensus 183 ~F~~e~v~~~S~Aa~~Lc~WV~A~~-~Y~~v~~~V~P----~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~ 257 (344)
T PF12777_consen 183 DFNPEKVRKASKAAGSLCKWVRAMV-KYYEVNKEVEP----KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKE 257 (344)
T ss_dssp TSSHHHHHHH-TTHHHHHHHHHHHH-HHHHHCCCCCH----HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhhcchHHHHHHHHHH-HHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666544332222111221 23332233333 344555555555555555666666666666667777777
Q ss_pred HHHHHHhhHhHhhhh
Q 038418 193 LEESNKQNKALEKRM 207 (487)
Q Consensus 193 L~e~~~~n~~Lekrl 207 (487)
+++.......|+..+
T Consensus 258 ~~~~~~e~~~l~~~~ 272 (344)
T PF12777_consen 258 YEEAQKEKQELEEEI 272 (344)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 766666665555443
No 108
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.03 E-value=3.1e+02 Score=25.73 Aligned_cols=18 Identities=6% Similarity=0.073 Sum_probs=7.9
Q ss_pred HHHHHhhcCCCCchhHhH
Q 038418 104 YVQLQHAQSPYDADGIQS 121 (487)
Q Consensus 104 Y~qLQ~Ah~PyDpdkI~a 121 (487)
|+.....-.++.|..+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~ 76 (191)
T PF04156_consen 59 CLLSKRPVQSVRPQQIEE 76 (191)
T ss_pred HHHHccccccchHHHHHh
Confidence 333344444455544443
No 109
>PRK14143 heat shock protein GrpE; Provisional
Probab=41.03 E-value=24 Score=35.64 Aligned_cols=56 Identities=27% Similarity=0.342 Sum_probs=39.0
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEecc
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLSP 482 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls~ 482 (487)
++.-+.+ .|..|||.+.|-|..... + +..+-.|.=.+-+|++++++||+ ++|-++.
T Consensus 166 GV~~i~~-~G~~FDP~~HEAv~~~~~-------------------~-~~~~gtVv~v~qkGY~l~~RVLRpA~V~Vsk 222 (238)
T PRK14143 166 GVSPMRV-VGQEFDPNLHEAVLREPS-------------------D-EHPEDVVLEELQRGYHLGGRVLRHAMVKVSM 222 (238)
T ss_pred CCeeeCC-CCCCCChHHhheeeeecC-------------------C-CCCcCeEEEEeeCCceeCCEecccceEEECC
Confidence 3444554 599999999998854321 1 12345577789999999999997 4666653
No 110
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.02 E-value=4.1e+02 Score=27.14 Aligned_cols=104 Identities=21% Similarity=0.171 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCc--hhhhHHHHHHHHHHhhh
Q 038418 89 FLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSP--EKTMVSAEIQELKSLLK 166 (487)
Q Consensus 89 li~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~--~~~~l~aei~e~q~ll~ 166 (487)
.+.++=+-.++++.+|+.+|.+= +.+.-=....-+||+.+.+=+..-..+...... ....|.-|++..+.-.+
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~-----e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~ 106 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIEL-----EDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERIN 106 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 45566666777788888888764 555555556667777666555444444322211 12446666666666665
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038418 167 TYEIMGKKLESQLKLKDSEIIFLKEKLEESN 197 (487)
Q Consensus 167 tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~ 197 (487)
+.+--+..|..++.....+|..|++++....
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555554443
No 111
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=40.75 E-value=17 Score=40.30 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 185 EIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 185 ei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
+|+.|+++|++++.+...|.+|+..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccch
Confidence 3444444444444444444444433
No 112
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=40.47 E-value=30 Score=38.99 Aligned_cols=94 Identities=22% Similarity=0.224 Sum_probs=58.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 038418 177 SQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTVLRHTVKS---IRSFVRLMIDELKS 253 (487)
Q Consensus 177 ~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~~A~~S---ir~F~KlLi~~Mk~ 253 (487)
.|+..--+.|..|+.+|.++...|..|+++|..-... ++ -.-..|.+.|..=-.. +|.=|..|+.+|+.
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~q--l~------e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~ 367 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQ--LD------EDQRSFEQALNDKDAEIAKMREECQQLSVELQK 367 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhh--hh------hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777889999999999999999999998652211 11 1123555555443333 45556666666653
Q ss_pred cCCCHHHHhhhcCCCcccccCCcch--HHHHHHHHHHHhccCCCCCC
Q 038418 254 AGWDIDAAANSIQPNVVYYRADHKC--FAFESFVCREMFDAFHYPNY 298 (487)
Q Consensus 254 agwDl~aaa~si~p~v~y~k~~h~k--falEA~v~r~MF~gFe~~~F 298 (487)
- + +.+ .=.|--.-|.|.+|=+....
T Consensus 368 L----------l----------D~ki~Ld~EI~~YRkLLegee~r~~ 394 (546)
T KOG0977|consen 368 L----------L----------DTKISLDAEIAAYRKLLEGEEERTG 394 (546)
T ss_pred h----------h----------chHhHHHhHHHHHHHHhccccCCCC
Confidence 1 1 112 22355566889988888753
No 113
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.04 E-value=1.6e+02 Score=28.33 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 172 GKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 172 ~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
+.+|+.++..+|..|..+-.+|.++.+.-..+
T Consensus 31 I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 31 IQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888887777777777765544333
No 114
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.73 E-value=5.8e+02 Score=28.70 Aligned_cols=61 Identities=21% Similarity=0.184 Sum_probs=37.3
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHH
Q 038418 91 AKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQE 160 (487)
Q Consensus 91 ~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e 160 (487)
..+-|---..-.+|.+||+--+-+ +.-.+||+.|..||.+...--.|+..+...|.+.+.+
T Consensus 244 eel~ae~kqh~v~~~ales~~sq~---------~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~ 304 (521)
T KOG1937|consen 244 EELQAEYKQHLVEYKALESKRSQF---------EEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAE 304 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH---------HHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHH
Confidence 334444445556788888654332 2356899999999999887555555444444444433
No 115
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=39.59 E-value=57 Score=30.97 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 167 TYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 167 tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
++|.++.-||.|++.|..+|..+|+.++++..
T Consensus 128 ARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~ 159 (162)
T PF05983_consen 128 ARETLIMMMEEQLEEKREEIEEIRKVCEKARE 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899999999999999999999988754
No 116
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=39.58 E-value=4.1e+02 Score=27.44 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=24.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 157 EIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 157 ei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
+.+..+.....|...+..|+.++....++|..++.+++.+...-..+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 131 QQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555544443333333
No 117
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.57 E-value=2e+02 Score=27.98 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 171 MGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 171 ~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
.+.+|++++..-..+|..|+++|+++..
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777777777777777766644
No 118
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=39.41 E-value=1.1e+02 Score=37.13 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q 038418 86 LEAFLAKLFASISTVKSSYVQLQ 108 (487)
Q Consensus 86 ~eali~~lFa~VSslKaAY~qLQ 108 (487)
+-++|..+=..|..+|.-|..+|
T Consensus 226 ~~~~i~~~~e~i~~l~k~i~e~~ 248 (1074)
T KOG0250|consen 226 AKELIDLKEEEIKNLKKKIKEEE 248 (1074)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 33456666666666666665544
No 119
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.07 E-value=3.2e+02 Score=31.28 Aligned_cols=44 Identities=27% Similarity=0.278 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 155 SAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 155 ~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
.+=+..+.+....|+-.+++|+.|+..|.+||..|+++-+++..
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677778889999999999999999999999988844
No 120
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=39.07 E-value=5.3e+02 Score=27.87 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=45.6
Q ss_pred hhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHH--------------HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038418 132 LLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEI--------------MGKKLESQLKLKDSEIIFLKEKLEESN 197 (487)
Q Consensus 132 ~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~--------------~~~kLe~e~~~KDsei~~Lk~kL~e~~ 197 (487)
.|++|..+|..+ +|..-.+.++|..++..++.... ....|+.++..-+.++..|+.+++.+.
T Consensus 262 ~l~~l~~~y~~~----hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~ 337 (498)
T TIGR03007 262 QLDALRLRYTDK----HPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELT 337 (498)
T ss_pred HHHHHHHHhccc----ChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788655 56666677778777776644321 124455566666666666777666666
Q ss_pred HhhHhHhhhhh
Q 038418 198 KQNKALEKRMN 208 (487)
Q Consensus 198 ~~n~~Lekrl~ 208 (487)
+.-..++.++.
T Consensus 338 ~~~~~~~~~~~ 348 (498)
T TIGR03007 338 ARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHHH
Confidence 65555655543
No 121
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=38.68 E-value=5.2e+02 Score=29.71 Aligned_cols=29 Identities=21% Similarity=0.199 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 168 YEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 168 ye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
....++.++.+++.|+..+..|..+++.+
T Consensus 452 ~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 452 LREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33445677777777777777777666544
No 122
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=38.39 E-value=2.4e+02 Score=26.52 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=24.2
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 161 LKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 161 ~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
....+..|-..++.+++++...+.|+.+|.+.-.....+..+|
T Consensus 38 ~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~L 80 (162)
T PF05565_consen 38 IEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRL 80 (162)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666665555444444444
No 123
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.26 E-value=1.1e+02 Score=31.13 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
+.|+.-|.-||.-.| .-..+||.|++.--.+|..|+.+++.+...|-+|=+|+
T Consensus 78 ~siLpIVtsQRDRFR---~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 78 SSILPIVTSQRDRFR---QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred ccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777777776644 44588999999999999999999999999999996654
No 124
>PRK14146 heat shock protein GrpE; Provisional
Probab=37.87 E-value=31 Score=34.40 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=35.7
Q ss_pred CCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCC----eEEE-eEEEecc
Q 038418 414 KGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGK----TVLQ-CQVYLSP 482 (487)
Q Consensus 414 rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~----tVik-crVYls~ 482 (487)
.|..|||.++|-|..... ++-.+..|.-.+-+|+++++ +||+ ++|-++.
T Consensus 159 ~G~~FDP~~HeAv~~~~~--------------------~~~~~g~Vv~v~qkGY~l~~r~~~RvLRpA~V~Vak 212 (215)
T PRK14146 159 KGEPFDPMSMEALSSEEG--------------------DQYSEETVIDVYQAGYYYKENEDKFTLRPARVRIGK 212 (215)
T ss_pred CCCCCChhHhceeeeecC--------------------CCCCcCEEEEEeeCCeEeCCccCCeeccCceEEeCC
Confidence 699999999999875321 11234557788899999998 4876 5676654
No 125
>PRK14164 heat shock protein GrpE; Provisional
Probab=37.68 E-value=27 Score=34.90 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=33.3
Q ss_pred CCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEec
Q 038418 414 KGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLS 481 (487)
Q Consensus 414 rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls 481 (487)
.|..|||..-|-|..... + ....|+=.+-+||++|++||+ ++|-++
T Consensus 169 ~Ge~FDP~~HEAV~~~~~-------------------~---~~~~V~~V~qkGY~l~dRVLRPA~V~Va 215 (218)
T PRK14164 169 EGDAFDPEIHEAVQDLSS-------------------G---DEKVLGTVLRKGYRMGDRVLRTAMVIIA 215 (218)
T ss_pred CCCCCChhHhheeeeecC-------------------C---CCCEeeEEeeCCcEECCEeccCceEEeC
Confidence 599999999998754221 1 123577778999999999997 456554
No 126
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=37.65 E-value=2.3e+02 Score=27.94 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=10.6
Q ss_pred hHHHHHHHHHhhcC
Q 038418 99 TVKSSYVQLQHAQS 112 (487)
Q Consensus 99 slKaAY~qLQ~Ah~ 112 (487)
+++.||++|+..+.
T Consensus 105 al~na~a~lehq~~ 118 (221)
T PF05700_consen 105 ALDNAYAQLEHQRL 118 (221)
T ss_pred HHHHHHHHHHHHHH
Confidence 67888888887654
No 127
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.48 E-value=81 Score=25.40 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 172 GKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 172 ~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
+.+||.++-.-++.|..+|.+++++....-.+++.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777666665555543
No 128
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=37.28 E-value=2.4e+02 Score=26.65 Aligned_cols=51 Identities=29% Similarity=0.328 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhH----hHhhhhh
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNK----ALEKRMN 208 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~----~Lekrl~ 208 (487)
+..++..++.-|.+...+++.|+.. . ..+..|+.+++++...|. ..+.++.
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~--~--~d~eeLk~~i~~lq~~~~~~~~~~e~~l~ 79 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKS--A--KDNEELKKQIEELQAKNKTAKEEYEAKLA 79 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666652 2 344577888888888887 4444443
No 129
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=37.13 E-value=1.6e+02 Score=35.11 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH----------hhhhhccCC-CcCCccc
Q 038418 151 KTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL----------EKRMNQSGQ-LVMPDNV 219 (487)
Q Consensus 151 ~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L----------ekrl~~s~~-ls~~d~l 219 (487)
.+.++..++.+|.+.++-|+..+.|-.+...++.+|+.||.++-.++...+.. ..|++.-|. +++.|.
T Consensus 360 rd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~- 438 (1265)
T KOG0976|consen 360 RDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADY- 438 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHH-
Confidence 46677888899999999999999999999999999999999998776653322 245554442 344442
Q ss_pred ccCCCChhHHHHHHHHHHHH
Q 038418 220 HLSGLSPSHFNTVLRHTVKS 239 (487)
Q Consensus 220 ~~s~lsp~~F~~~l~~A~~S 239 (487)
--++|-.+.++|--+
T Consensus 439 -----Q~s~fk~Lke~aegs 453 (1265)
T KOG0976|consen 439 -----QLSNFKVLKEHAEGS 453 (1265)
T ss_pred -----HHhhHHHHHHhhhhh
Confidence 236777777766443
No 130
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.72 E-value=6.3e+02 Score=31.85 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHH
Q 038418 89 FLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCY 140 (487)
Q Consensus 89 li~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y 140 (487)
+....=+-+-+|..|=...+.|+ +.|+.||.-++--=+.|...++.-
T Consensus 1561 v~~~ae~V~eaL~~Ad~Aq~~a~-----~ai~~a~~~~~~a~~~l~kv~~~t 1607 (1758)
T KOG0994|consen 1561 VKGQAEDVVEALEEADVAQGEAQ-----DAIQGADRDIRLAQQLLAKVQEET 1607 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333333444555444444554 678888877664444555554433
No 131
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=36.63 E-value=1e+02 Score=28.42 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=35.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
++++..-+.++|..++-|+++.+.-+.++..|+.+|.++...
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566677888999999999999999999999999999776554
No 132
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=36.44 E-value=3.4e+02 Score=33.20 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=8.0
Q ss_pred HHHHHhhHHHHHHHHHhhc
Q 038418 93 LFASISTVKSSYVQLQHAQ 111 (487)
Q Consensus 93 lFa~VSslKaAY~qLQ~Ah 111 (487)
+.+.+..++..+..+..+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~ 392 (1163)
T COG1196 374 LEELFEALREELAELEAEL 392 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 133
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=35.89 E-value=2.5e+02 Score=36.52 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHh
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALE 204 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Le 204 (487)
..+..+++++++.++.+|.+..|++.+....+.+|..|++.+..+...+.+|.
T Consensus 932 ~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ 984 (1930)
T KOG0161|consen 932 RKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLS 984 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44668899999999999999999999999999999999999998877777764
No 134
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.82 E-value=5.2e+02 Score=26.86 Aligned_cols=130 Identities=19% Similarity=0.216 Sum_probs=69.0
Q ss_pred hhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 117 DGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 117 dkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
|.|+.+|.-+-.=.+.+..+. .+...|.++|.+.++-+..-..-+.++++++..=..+|..|++.|.
T Consensus 31 ~~i~~~ds~l~~~~~~~~~~q-----------~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~-- 97 (265)
T COG3883 31 DKIQNQDSKLSELQKEKKNIQ-----------NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV-- 97 (265)
T ss_pred hHHHhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 337777765432222333332 1234467777777777755555556666666666666666665553
Q ss_pred HHhhHhHhhhhhc---cCCCcCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 038418 197 NKQNKALEKRMNQ---SGQLVMPDNVHLSGLSPSHFNTVLRHTVKSIRSFVRLMIDELKSAGWDIDAA 261 (487)
Q Consensus 197 ~~~n~~Lekrl~~---s~~ls~~d~l~~s~lsp~~F~~~l~~A~~Sir~F~KlLi~~Mk~agwDl~aa 261 (487)
.++..|.+|++. +|....--++.++.-+-+-|+.=+. |...|-++=|-++...+.-.-+|...
T Consensus 98 -~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvt-Ai~~iv~aDk~ile~qk~dk~~Le~k 163 (265)
T COG3883 98 -ERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVT-AISVIVDADKKILEQQKEDKKSLEEK 163 (265)
T ss_pred -HHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 356677777543 2322111122333334444444443 44566677777777666655555443
No 135
>PRK14159 heat shock protein GrpE; Provisional
Probab=35.79 E-value=45 Score=32.33 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEEe-EEE
Q 038418 415 GSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQC-QVY 479 (487)
Q Consensus 415 G~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVikc-rVY 479 (487)
| .|||.+.|-|..... ++-.+-.|.-.+-+|+++|++||+. +|-
T Consensus 129 G-~FDP~~HEAv~~~~~--------------------~~~~~gtVv~v~qkGY~l~dRVLRpA~V~ 173 (176)
T PRK14159 129 K-EFDPNLHEAMFHVDS--------------------ENHQSGEVVQVLQKGYKIADRVIRPTKVS 173 (176)
T ss_pred C-CCChHHhhhhheeCC--------------------CCCCcCeEEEEeeCCcEeCCEeeecceeE
Confidence 6 699999998865321 1123456778899999999999974 443
No 136
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=35.55 E-value=1.9e+02 Score=32.12 Aligned_cols=111 Identities=26% Similarity=0.385 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhHH---------HHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCch-hhhHHH
Q 038418 87 EAFLAKLFASISTVK---------SSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPE-KTMVSA 156 (487)
Q Consensus 87 eali~~lFa~VSslK---------aAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~-~~~l~a 156 (487)
++.|.++.+.|..+- .-|+-||-.+.|=+...+. +|+++|..|+.-+=.=..+..+.... .-.+..
T Consensus 142 ~~eve~vl~~iQ~ldP~GV~Ar~l~EcL~lQL~~~~~~~~~~~----~v~~~l~lla~~d~~~i~~~~~v~~~dl~~~l~ 217 (444)
T COG1508 142 EEEVEKVLARIQSLDPAGVGARDLRECLLLQLERRPLDDPALE----IVIDHLELLARRDFTTIARELKVDEDELKEALL 217 (444)
T ss_pred HHHHHHHHHHHhcCCCCccccCcHHHHHHHHHHhcCCCChhHH----HHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHH
Confidence 456777777776653 4588899988776666555 78889988876530000011111100 001111
Q ss_pred HHHHH----------------------------------------HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 157 EIQEL----------------------------------------KSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 157 ei~e~----------------------------------------q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
+|+.+ =.+-++|..++++-+. +.+-..|+++|.++
T Consensus 218 ~I~~l~PrPg~~f~~~~~~~vvPDv~v~~~~g~w~v~ln~d~lP~i~ln~~Y~~~~~~~~~-----~~~~~~L~~~lq~A 292 (444)
T COG1508 218 LIRSLDPRPGLEFSSGEAEYVVPDVLVRKHNGEWTVELNDDSLPRIRLNQEYAALVSRAEN-----DEDQDFLKEKLQEA 292 (444)
T ss_pred HHHccCCCCccccccCCCcccCCCEEEEeeCCeEEEEEccccCceeeecHHHHHHHhhccc-----chhHHHHHHHHHHH
Confidence 11111 1345789999987655 67778999999999
Q ss_pred HHhhHhHhhh
Q 038418 197 NKQNKALEKR 206 (487)
Q Consensus 197 ~~~n~~Lekr 206 (487)
.---++|+.|
T Consensus 293 ~wLiksL~qR 302 (444)
T COG1508 293 KWLIKSLEQR 302 (444)
T ss_pred HHHHHHHHHH
Confidence 8888888877
No 137
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.44 E-value=2.1e+02 Score=24.32 Aligned_cols=52 Identities=25% Similarity=0.148 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
..++++|.|+...+.-=|.++..|...+-...-.|+.++.+|+-+..+-..+
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3477888898888888899999999999999999999999997666544433
No 138
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.32 E-value=2.6e+02 Score=27.62 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKL 193 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL 193 (487)
+.++|||.++++.|-+ ..+|.++..=+-|+...+++|
T Consensus 103 s~veaEik~L~s~Lt~-----eemQe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 103 SYVEAEIKELSSALTT-----EEMQEEIQELKKEVAGYRERL 139 (201)
T ss_pred HHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4477777777777733 334444443344444444444
No 139
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=35.20 E-value=2.1e+02 Score=29.84 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=15.7
Q ss_pred HHHHHhhhh-HHHHHHHHHHHHHHHhhHhHh
Q 038418 175 LESQLKLKD-SEIIFLKEKLEESNKQNKALE 204 (487)
Q Consensus 175 Le~e~~~KD-sei~~Lk~kL~e~~~~n~~Le 204 (487)
|+.+-+..| ..+..|-+|.+.++..|.-|+
T Consensus 73 LkleKeTADltH~~~L~~K~~~Lq~m~shLe 103 (277)
T PF15003_consen 73 LKLEKETADLTHPDYLAEKCEALQSMNSHLE 103 (277)
T ss_pred HHhhcchHhhhCHHHHHHHHHHHHHHHHHHH
Confidence 333333444 355566666666665555554
No 140
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=34.91 E-value=1.2e+02 Score=27.58 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=32.4
Q ss_pred hHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 038418 133 LSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQL 179 (487)
Q Consensus 133 Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~ 179 (487)
+-+|++-+++++-....+.+.+...++|+...+.+.|..+..|++.+
T Consensus 17 v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dV 63 (112)
T PF07439_consen 17 VKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADV 63 (112)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 34556666654443344567788999999999988887777776654
No 141
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=34.82 E-value=7.8e+02 Score=28.59 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHh
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALE 204 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Le 204 (487)
|.++|.++|..+..-..-++.++.|+...|.++.+-..++.++..+.--|+
T Consensus 84 L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~ 134 (632)
T PF14817_consen 84 LEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLE 134 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666555555677777777777777777777776666554443
No 142
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=34.72 E-value=2.5e+02 Score=25.91 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHhhHhHhhhhhccCCC--cCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038418 182 KDSEIIFLKEKLEESNKQNKALEKRMNQSGQL--VMPDNVHLSGLSPSHFNTVLRHTVKSIRSFVRLMIDEL 251 (487)
Q Consensus 182 KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~l--s~~d~l~~s~lsp~~F~~~l~~A~~Sir~F~KlLi~~M 251 (487)
||.-+++|-.+|..+...|+.|-+++.+++.. +..|. .+||..=...+-.+ +..|++.-...+
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~----~LTp~qKe~~I~s~---~~~Lss~A~~KI 65 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDE----VLTPAQKEAMITSA---VSKLSSQASKKI 65 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT------B--HHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcc----ccChHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45667788888999999999999999987741 11111 37887655555443 455655544444
No 143
>PRK14163 heat shock protein GrpE; Provisional
Probab=34.42 E-value=34 Score=34.19 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=39.5
Q ss_pred ceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEeccC
Q 038418 407 ASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLSPA 483 (487)
Q Consensus 407 a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls~~ 483 (487)
+..+.. .|..|||.+.|-|...... +..+-.|.=.+-+|+++|++||+ ++|-++..
T Consensus 132 v~~I~~-~G~~FDP~~HEAv~~~~~~--------------------~~~~gtVv~v~qkGY~l~~RVLRPA~V~Vsk~ 188 (214)
T PRK14163 132 LQQFGK-EGEPFDPTIHEALMHSYAP--------------------DVTETTCVAILQPGYRIGERTIRPARVAVAEP 188 (214)
T ss_pred CEEeCC-CCCCCChhHhceeeeecCC--------------------CCCcCEEEEEeeCCcCcCCEeccCceEEECCC
Confidence 444443 6999999999988643211 12345677889999999999997 56766654
No 144
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.22 E-value=3e+02 Score=23.59 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=34.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKL-KDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~-KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
+.|++.|=+..|..+.+.-+.-.. =..+|..|+++...+...|..|-+++
T Consensus 48 ~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 48 LKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666666667666664433222 23478899999999999999887765
No 145
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=34.10 E-value=8.5e+02 Score=28.80 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=5.6
Q ss_pred CCeEEEEec-CC
Q 038418 456 EPRVAFTIV-PG 466 (487)
Q Consensus 456 ~~~VgftV~-PG 466 (487)
+..+|++-. +|
T Consensus 1144 d~~~~~~~~~~g 1155 (1164)
T TIGR02169 1144 DRAIGVTMRRNG 1155 (1164)
T ss_pred ceeEeEEEecCC
Confidence 445555544 55
No 146
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=33.88 E-value=1.2e+02 Score=27.14 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEK 192 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~k 192 (487)
|...+..++.-++......++|+..++..+.+|..||++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444445555555555555555555544
No 147
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=33.79 E-value=3.5e+02 Score=30.29 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=63.4
Q ss_pred CCchhHhHhHHHHHHHHHhhH--HHHHHHhhcCCCCCc-hhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 038418 114 YDADGIQSADQLVVSELKLLS--ELKQCYLKKQFDFSP-EKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLK 190 (487)
Q Consensus 114 yDpdkI~aAD~~vVsEL~~Ls--~LK~~y~~~~~~~~~-~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk 190 (487)
++++.|...=..|=+=|..|. .++|.+.= ..+| ++.+|.+.++..++...-|....+.++.....=-.++..|+
T Consensus 397 ~t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~I---k~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~ 473 (507)
T PF05600_consen 397 QTAESIEEMLSAVEEIISQLTNPRTQHLFMI---KSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELE 473 (507)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 788888776544333333332 23334431 1233 47889999999999999999888888888888888999999
Q ss_pred HHHHHHHHhhHhHhh
Q 038418 191 EKLEESNKQNKALEK 205 (487)
Q Consensus 191 ~kL~e~~~~n~~Lek 205 (487)
.+|+.+..+.+.|-+
T Consensus 474 pkL~~l~~~Tr~Lq~ 488 (507)
T PF05600_consen 474 PKLDALVERTRELQK 488 (507)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888776643
No 148
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.54 E-value=3.6e+02 Score=33.38 Aligned_cols=50 Identities=22% Similarity=0.147 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
+.++|+..+..++.-...+..++.+...+..+|..|+.++.++......+
T Consensus 827 le~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl 876 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQI 876 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445444444444444455556666666666666655555544433333
No 149
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=33.44 E-value=1.6e+02 Score=35.86 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=16.8
Q ss_pred hHhHHHHHHHHHhhHHHHHHHhhcCCC
Q 038418 120 QSADQLVVSELKLLSELKQCYLKKQFD 146 (487)
Q Consensus 120 ~aAD~~vVsEL~~Ls~LK~~y~~~~~~ 146 (487)
+.|-+.+.+.+..+..|-..|+...-+
T Consensus 131 qe~se~i~e~~le~vGl~~~~~~s~s~ 157 (1195)
T KOG4643|consen 131 QEASEKIAEKLLELVGLEKKYRESRSG 157 (1195)
T ss_pred HHHHHHHHHHHHHHhcccceeeccccC
Confidence 344445566666777777788865433
No 150
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.44 E-value=1.4e+02 Score=28.47 Aligned_cols=32 Identities=34% Similarity=0.366 Sum_probs=24.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 176 ESQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 176 e~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
+.+....+.||..|+++|++.+.....|-++.
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667899999999999877777776654
No 151
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.37 E-value=2.8e+02 Score=23.08 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=28.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038418 157 EIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEE 195 (487)
Q Consensus 157 ei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e 195 (487)
-|..+|.-++.-|..+..|...+...+.++..|+..|..
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455566666666777788888888888888888887753
No 152
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=33.28 E-value=36 Score=25.12 Aligned_cols=19 Identities=37% Similarity=0.727 Sum_probs=14.8
Q ss_pred HHHHHHhcCCCHHHHhhhc
Q 038418 247 MIDELKSAGWDIDAAANSI 265 (487)
Q Consensus 247 Li~~Mk~agwDl~aaa~si 265 (487)
-+..|+..+|||..|++..
T Consensus 18 A~~~L~~~~wdle~Av~~y 36 (43)
T PF14555_consen 18 AIQYLEANNWDLEAAVNAY 36 (43)
T ss_dssp HHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 3567899999999999864
No 153
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.18 E-value=1.2e+02 Score=26.30 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 164 LLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 164 ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
-+...+..+++|+.++.....++..|+.+|.++
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566777777777777777777777665
No 154
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=32.91 E-value=4.9e+02 Score=32.05 Aligned_cols=129 Identities=22% Similarity=0.347 Sum_probs=67.6
Q ss_pred HhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHH------HHHHHHhhh--hHHHHHHH
Q 038418 119 IQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGK------KLESQLKLK--DSEIIFLK 190 (487)
Q Consensus 119 I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~------kLe~e~~~K--Dsei~~Lk 190 (487)
+++||. |++|...-+-.+ |..-.-|+-|....|...+.+|+.-+ -+++.+ ++|+.-..+ |+| ++|
T Consensus 1137 l~~A~~-Vi~~~D~eaL~~--y~~~k~D~r~da~klk~~me~qk~tl--i~AL~kKg~a~ak~e~l~g~~e~dae-ee~- 1209 (1304)
T KOG1114|consen 1137 LSAADS-VIQEIDTEALAR--YYALKEDTRPDAVKLKKKMEKQKDTL--IDALVKKGEAFAKYEALKGHKEQDAE-EEL- 1209 (1304)
T ss_pred HHHHHH-HHHhhcHHHHHH--HHhcccCCcchHHHHHHHHHHHHHHH--HHHHHHhhhHHhhhhhhcccccccch-hhh-
Confidence 778887 777776433332 55434556666667777777776543 223222 233322222 444 333
Q ss_pred HHHHHHHHhhHhHhhhhhccCCCcCCcccccC---CCChhHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCCCH
Q 038418 191 EKLEESNKQNKALEKRMNQSGQLVMPDNVHLS---GLSPSHFNTVLRHTVKSIR--------SFVRLMIDELKSAGWDI 258 (487)
Q Consensus 191 ~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s---~lsp~~F~~~l~~A~~Sir--------~F~KlLi~~Mk~agwDl 258 (487)
.+|+..+..=..|-|.+..+-. .-.++. ...-.+|=.+++...+.|. +-+++++..|++-||.=
T Consensus 1210 s~ld~~~e~y~el~kw~d~~ds----K~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H 1284 (1304)
T KOG1114|consen 1210 SKLDSYNENYQELLKWLDASDS----KVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNH 1284 (1304)
T ss_pred hhhhhHHHHHHHHHHHhhcCCc----hheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchH
Confidence 4455544433445455433211 001111 1223455555655555544 77888999999999973
No 155
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=32.91 E-value=5.1e+02 Score=25.83 Aligned_cols=84 Identities=31% Similarity=0.439 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhh-----cCCCCCchhhhHHHHHHHHHHhhhHHHHHH
Q 038418 98 STVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLK-----KQFDFSPEKTMVSAEIQELKSLLKTYEIMG 172 (487)
Q Consensus 98 SslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~-----~~~~~~~~~~~l~aei~e~q~ll~tye~~~ 172 (487)
++++..|-+|.+. .+.||+.--.|=+.|.+ +++. ....+..++|+.+...+
T Consensus 40 ~~~~~KY~~lR~E---------------lI~ELkqsKklydnYYkL~~KY~~LK------~~~~~~~~l~~~i~~le--- 95 (196)
T PF15272_consen 40 TSYKEKYQQLRQE---------------LINELKQSKKLYDNYYKLYSKYQELK------KSSKQSEDLQSRISNLE--- 95 (196)
T ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHhhHHHHHHHHHHH---
Confidence 5677777777653 77888877666666653 1111 12333344444443222
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 173 KKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
++|-.++..||.+|..|.++|.++..++..|+.
T Consensus 96 ~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~ 128 (196)
T PF15272_consen 96 KQLVDQMIEKDREIRTLQDELLSLELRNKELQN 128 (196)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445678899999999999888888777753
No 156
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.80 E-value=1e+02 Score=26.50 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 171 MGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 171 ~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
+..+||+-++.-=..|.-|+-+++|+..+|..|....+
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888899999999999999888877544
No 157
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.75 E-value=4.5e+02 Score=26.55 Aligned_cols=43 Identities=23% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
+.+|......-+.+.+.-+++.+.+++..+.+...|+++.+++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444333444444444444444444444455555555444
No 158
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=32.64 E-value=2.7e+02 Score=25.41 Aligned_cols=9 Identities=22% Similarity=0.209 Sum_probs=3.5
Q ss_pred HhHHHHHHH
Q 038418 121 SADQLVVSE 129 (487)
Q Consensus 121 aAD~~vVsE 129 (487)
.-|..||.=
T Consensus 31 ~~~~~vin~ 39 (151)
T PF11559_consen 31 DNDVRVINC 39 (151)
T ss_pred ccHHHHHHH
Confidence 333444433
No 159
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=32.49 E-value=2.5e+02 Score=33.33 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=53.5
Q ss_pred hHhHhHHHHHHHHHhhHHHHHHHh--hcCCC----CCchh-hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 038418 118 GIQSADQLVVSELKLLSELKQCYL--KKQFD----FSPEK-TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLK 190 (487)
Q Consensus 118 kI~aAD~~vVsEL~~Ls~LK~~y~--~~~~~----~~~~~-~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk 190 (487)
++.+=-+-.|.|+|+.-|+-|.+| .++.+ +.|.. ..+. .++.+-+.++|..+.|||+|++.=++--..||
T Consensus 43 ~v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~---~p~~~~i~dle~~l~klE~el~eln~n~~~L~ 119 (829)
T KOG2189|consen 43 DVSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPP---APPPREIIDLEEQLEKLESELRELNANKEALK 119 (829)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCC---CCCchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344445567778888888866554 32211 11110 1010 22344566788899999999999888888888
Q ss_pred HHHHHHHHhhHhHhh
Q 038418 191 EKLEESNKQNKALEK 205 (487)
Q Consensus 191 ~kL~e~~~~n~~Lek 205 (487)
..+.++.....-|+|
T Consensus 120 ~n~~eL~E~~~vl~~ 134 (829)
T KOG2189|consen 120 ANYNELLELKYVLEK 134 (829)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888766655554
No 160
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=32.40 E-value=3.5e+02 Score=29.96 Aligned_cols=55 Identities=16% Similarity=0.063 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
...-|..+|.-+..-++.+..|.+-+.-.+-+|..|+.+++.+.++-.....|+.
T Consensus 284 ~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 284 IYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444444455777777777666666666656654
No 161
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=32.35 E-value=1.1e+02 Score=31.36 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=21.5
Q ss_pred HHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHH
Q 038418 130 LKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTY 168 (487)
Q Consensus 130 L~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~ty 168 (487)
.+++..|+++|..- ......|+++|.+|+.-|..+
T Consensus 179 ~eki~~Lr~~y~~l----~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 179 REKIAALRQRYNQL----SNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34777777777752 122355777777776666554
No 162
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=31.84 E-value=4.3e+02 Score=24.65 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=50.3
Q ss_pred HhHHHHHHH-HHhhHHHHHHHhhcCCCCCchh--------hhHHHHHHHHHHhhhHH--------------HHHHHHHHH
Q 038418 121 SADQLVVSE-LKLLSELKQCYLKKQFDFSPEK--------TMVSAEIQELKSLLKTY--------------EIMGKKLES 177 (487)
Q Consensus 121 aAD~~vVsE-L~~Ls~LK~~y~~~~~~~~~~~--------~~l~aei~e~q~ll~ty--------------e~~~~kLe~ 177 (487)
.+.+++|++ +..+|.||..|..=|..-+|+. ..+-+|++.+-.+=+.| ...++.+++
T Consensus 8 ~~~eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qs 87 (131)
T PF04859_consen 8 AAMEALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQS 87 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHH
Confidence 344455555 5699999999998544444442 22445555554444434 344667777
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 178 QLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 178 e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
.++..+.-+..|+.+++.=.+.-..|
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~L 113 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRL 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776444433333
No 163
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=31.82 E-value=2e+02 Score=25.22 Aligned_cols=70 Identities=26% Similarity=0.219 Sum_probs=31.7
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 125 LVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 125 ~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
+|..||..|.+=..+|+-=.+-.... ....-+..+..-+...|..+++|+.++......+..++.+|.++
T Consensus 38 ~v~~eL~~l~~d~~vyk~VG~vlv~~--~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 38 KALEELERLPDDTPVYKSVGNLLVKT--DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHcCCCcchhHHHhchhhhee--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777766566777421100000 01111223333333345555555555554444455555444443
No 164
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.36 E-value=1.8e+02 Score=29.37 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
+.+..++..++..+..+..-..+..+....=+.+|..||+.|++.+..+..|+.++.
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 456666666666666665555555555555566777778888777777766666543
No 165
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.07 E-value=83 Score=25.10 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 172 GKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 172 ~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
+..|+.++..-..++..|+++++.+......+|+
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~ 59 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERLKNDPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3455555555555555566655555333344444
No 166
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.80 E-value=1e+02 Score=34.29 Aligned_cols=12 Identities=8% Similarity=0.243 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 038418 86 LEAFLAKLFASI 97 (487)
Q Consensus 86 ~eali~~lFa~V 97 (487)
|-++|...|+.-
T Consensus 54 ~~~vV~~~Fddk 65 (475)
T PRK13729 54 MTGVVDTTFDDK 65 (475)
T ss_pred ccceecchhHHH
Confidence 335666666654
No 167
>PRK14149 heat shock protein GrpE; Provisional
Probab=30.76 E-value=65 Score=31.69 Aligned_cols=53 Identities=9% Similarity=0.231 Sum_probs=35.4
Q ss_pred ceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEec
Q 038418 407 ASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLS 481 (487)
Q Consensus 407 a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls 481 (487)
+..+.. .| .|||.+.|-|..... ++..+-.|.=.+-+|++++++||+ ++|-++
T Consensus 135 V~~I~~-~G-~FDP~~HEAv~~v~~--------------------~~~~~gtVv~V~QkGY~l~dRVLRPA~V~Va 188 (191)
T PRK14149 135 IEGIEC-LE-EFDPNFHNAIMQVKS--------------------EEKENGKIVQVLQQGYKYKGRVLRPAMVSIA 188 (191)
T ss_pred CEEeCC-CC-CCChHHhheeeeecC--------------------CCCCcCEEEEEeeCCcEeCCEEeeccEEEeC
Confidence 344443 36 599999998864321 112345677889999999999997 455544
No 168
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=30.14 E-value=8.7e+02 Score=29.82 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 038418 89 FLAKLFASISTVKSSYVQ 106 (487)
Q Consensus 89 li~~lFa~VSslKaAY~q 106 (487)
-|..+.+.++.++..+.+
T Consensus 766 ~l~~~~~~~~~l~~~~~~ 783 (1163)
T COG1196 766 ELESLEEALAKLKEEIEE 783 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 169
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=30.12 E-value=5.1e+02 Score=29.12 Aligned_cols=109 Identities=21% Similarity=0.168 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCC--CCchhHhHhHHHHHHHHHhhHHHHHHHhhcCC------CCCchhhh
Q 038418 82 YRISLEAFLAKLFASISTVKSSYVQLQHAQSP--YDADGIQSADQLVVSELKLLSELKQCYLKKQF------DFSPEKTM 153 (487)
Q Consensus 82 ~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~P--yDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~------~~~~~~~~ 153 (487)
+..+--+||-++..+ |.-|..+|+---| -|.++|..|-.-=|..|+ +--|-.++.-. |..+ .-
T Consensus 438 ~ldaqG~LVqkIlET----kke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr---~~~Q~LtkSa~PLgkl~D~i~--eD 508 (583)
T KOG3809|consen 438 RLDAQGALVQKILET----KKEIEDGGGQDQPEESDADKIMSAEREKMKQLR---EKLQDLTKSAYPLGKLFDFIN--ED 508 (583)
T ss_pred hhhhhhhHHHHHHHH----HHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHH---HHHHHHHHhhccHHHHHhhhh--hh
Confidence 334445788888776 7888888876554 344555555544333332 22233333211 1111 22
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
+.|-+.|++---.+|---...||.+-+.-+.....|+..|+++...
T Consensus 509 ~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~ 554 (583)
T KOG3809|consen 509 IDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKE 554 (583)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHH
Confidence 4556666666666677777777777777777777777777766553
No 170
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.86 E-value=6.4e+02 Score=26.37 Aligned_cols=54 Identities=24% Similarity=0.163 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhh
Q 038418 153 MVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKR 206 (487)
Q Consensus 153 ~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekr 206 (487)
.++.+..+++..-..||...+.++.++.....|...|+.+++-...+-.+|.+.
T Consensus 82 ~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 82 ELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566666666667888888888888888888888888887777777666653
No 171
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.67 E-value=3e+02 Score=26.68 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 172 GKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 172 ~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
.+.|+.|.+.-..|+..|+++++.+...|..|++++
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777788888888888888888887765
No 172
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=29.66 E-value=5.4e+02 Score=25.10 Aligned_cols=32 Identities=28% Similarity=0.186 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 168 YEIMGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 168 ye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
|...+.+|+.....=+.....++.+|+++...
T Consensus 129 ~~~~~~~l~~H~~kl~~~~ke~~~kLeeLekE 160 (177)
T PF03234_consen 129 GKAELEELQEHRAKLEKEQKELKKKLEELEKE 160 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777776553
No 173
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.64 E-value=1.2e+03 Score=29.82 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 156 AEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 156 aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
.++++++..+...+..+.+++.++.....++..|+.++.++
T Consensus 362 e~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLael 402 (1486)
T PRK04863 362 ERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADY 402 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444455554444443
No 174
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=29.61 E-value=4.6e+02 Score=24.27 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=27.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038418 159 QELKSLLKTYEIMGKKLESQLKLKDSEIIFLKE 191 (487)
Q Consensus 159 ~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~ 191 (487)
.+-+.+++-|....++|+.+++.+...|..+..
T Consensus 89 ~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355779999999999999999999988887654
No 175
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=29.01 E-value=1.6e+02 Score=33.76 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=24.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 159 QELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 159 ~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
.|+|.++-..|..+++..+|++++++++..|.++|+.++..-..|
T Consensus 20 ~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~l 64 (732)
T KOG0614|consen 20 RELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKL 64 (732)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344445555555555556666666666666666665554443333
No 176
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=28.90 E-value=1.3e+03 Score=29.22 Aligned_cols=144 Identities=23% Similarity=0.236 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHH-hhHHHHHHHhhcCCCCC---chhhhHHHHHHHHH
Q 038418 87 EAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELK-LLSELKQCYLKKQFDFS---PEKTMVSAEIQELK 162 (487)
Q Consensus 87 eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~-~Ls~LK~~y~~~~~~~~---~~~~~l~aei~e~q 162 (487)
|+-+.+++..+|-=|.||..+|. ...|+. .++-|+.-|...+.... .....+..+.-.+|
T Consensus 699 e~~~~e~~~~lseek~ar~k~e~----------------~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq 762 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAEN----------------LLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQ 762 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHHH----------------HHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHH
Confidence 45566666666666666666553 222333 45556666664331111 11122233333333
Q ss_pred HhhhHHHHHHHHHHHHHhhhhHHHH------HHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHHHHHH
Q 038418 163 SLLKTYEIMGKKLESQLKLKDSEII------FLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTVLRHT 236 (487)
Q Consensus 163 ~ll~tye~~~~kLe~e~~~KDsei~------~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~~A 236 (487)
+.|...-..-..++.+++.++.++. ++++.++++....+.+|.+..+-+.+. .+-..-...+++.
T Consensus 763 ~~LEqe~~~r~~~~~eLssq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~---------~~~~~~~k~lq~~ 833 (1317)
T KOG0612|consen 763 SMLEQEISKRLSLQRELKSQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRGLN---------RSAWGQMKELQDQ 833 (1317)
T ss_pred HHHHHHHHHhhhhHHHhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------ccchhhhHHHHHH
Confidence 3333322233344444444444443 344444444444445554433322211 1112223455556
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 038418 237 VKSIRSFVRLMIDELKSAG 255 (487)
Q Consensus 237 ~~Sir~F~KlLi~~Mk~ag 255 (487)
..+=+.|..++-.++.+..
T Consensus 834 leae~~~~~~~ktq~~e~~ 852 (1317)
T KOG0612|consen 834 LEAEQCFSSLMKTQIIEDR 852 (1317)
T ss_pred HHHHHHHHHHHHhhhhhhh
Confidence 6666667777766665443
No 177
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=28.78 E-value=2.6e+02 Score=33.07 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=30.8
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 162 KSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 162 q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
-..|-..+.++.+|..+...-|+||..|..+|+...+.|..|
T Consensus 112 ~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~L 153 (769)
T PF05911_consen 112 SKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSL 153 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333445566777888888888888888888888887777665
No 178
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=28.74 E-value=5.6e+02 Score=25.86 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=34.6
Q ss_pred HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 163 SLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 163 ~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
.-++.|+..+.+|+.+.+.|+.|...|+.+|.++......-..++
T Consensus 82 ~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 82 QELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457777799999999999999999999998877544444443
No 179
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=28.59 E-value=6.7e+02 Score=25.86 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=8.4
Q ss_pred hHHHHHHHHHhhHHHHHHH
Q 038418 122 ADQLVVSELKLLSELKQCY 140 (487)
Q Consensus 122 AD~~vVsEL~~Ls~LK~~y 140 (487)
.+..+-++...+..-+..|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~ 142 (423)
T TIGR01843 124 VPELIKGQQSLFESRKSTL 142 (423)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 180
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.43 E-value=2.6e+02 Score=22.05 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=12.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 174 KLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 174 kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
.||.++..-..+...|+..+..+...+..|
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444333
No 181
>PRK10869 recombination and repair protein; Provisional
Probab=28.37 E-value=8.9e+02 Score=27.25 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 165 LKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 165 l~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
+..++..+++|+.++..-..+...+-++|.+.
T Consensus 336 L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~ 367 (553)
T PRK10869 336 LDDQEDDLETLALAVEKHHQQALETAQKLHQS 367 (553)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555554443
No 182
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=28.28 E-value=1.1e+02 Score=28.52 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=42.2
Q ss_pred HHHHHHHhhcCCCCCchhhhHHHHHHHH-HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 038418 134 SELKQCYLKKQFDFSPEKTMVSAEIQEL-KSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQN 200 (487)
Q Consensus 134 s~LK~~y~~~~~~~~~~~~~l~aei~e~-q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n 200 (487)
++|||-=|..+|........+.+=..++ .+.-+.+.=+++|+++.+..-....+.|-.+|..+...|
T Consensus 33 CeLKRVRRSRnWql~Ge~~~l~~~~~~lk~~~~~~~~~li~kie~~L~~~~dkle~l~~~L~~Li~~n 100 (128)
T PF12614_consen 33 CELKRVRRSRNWQLSGEADQLQSFLDQLKAEDYEEFQFLIKKIEAALLQHSDKLEPLEDKLARLIPQN 100 (128)
T ss_pred chHHHHHHhhhhHHhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchHHHHHHHHHHhC
Confidence 6778666656666554333333333333 123345666788888888888877788888887776655
No 183
>PRK14142 heat shock protein GrpE; Provisional
Probab=28.23 E-value=60 Score=32.75 Aligned_cols=51 Identities=24% Similarity=0.446 Sum_probs=36.3
Q ss_pred CCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEeccC
Q 038418 414 KGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLSPA 483 (487)
Q Consensus 414 rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls~~ 483 (487)
.|..|||.+.|-|..... ++......|.-.+-+|+++++.||+ ++|-++..
T Consensus 132 ~Ge~FDP~~HEAv~~ve~-------------------~e~~~~~tVveV~QkGYkL~dRVLRPA~V~Vsk~ 183 (223)
T PRK14142 132 EGEDFDPVLHEAVQHEGD-------------------GGQGSKPVIGTVMRQGYQLGEQVLRHALVGVVDT 183 (223)
T ss_pred CCCCCChhhhceeeeecC-------------------CCCCCCCEEEEEecCCcEeCCEeccCceEEECCC
Confidence 599999999998853211 1111233688888999999999997 57777643
No 184
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.19 E-value=2.8e+02 Score=31.51 Aligned_cols=44 Identities=20% Similarity=0.183 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 153 MVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 153 ~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
.+..++++++..++..+....+++.++..-+.++..+.++++++
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666666665555555544
No 185
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=28.18 E-value=6.1e+02 Score=25.27 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
+.-|+..++..++..|..-++|-++.+.=..|.-.|-.+++.+.-.|..+
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44555555555555555555555555555555555555555555554433
No 186
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=28.11 E-value=5.3e+02 Score=26.10 Aligned_cols=66 Identities=26% Similarity=0.329 Sum_probs=39.6
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhH
Q 038418 127 VSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNK 201 (487)
Q Consensus 127 VsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~ 201 (487)
+++|+++-.|+..|...++. ...+.+..+ +...+..+++++..++.....+..||+-.+.+.....
T Consensus 2 i~~~~~~~~~r~~~~~~~~~--~~L~~i~~~-------~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~ 67 (243)
T PF07160_consen 2 ISELKELLSLRNMGQDPNLK--DTLSKIDQE-------VSAIEELLNDIEQELQREEEALPKLKELMESSEEQQK 67 (243)
T ss_dssp HHHHHHHHHHHHHHHSHHHH--HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCChH--HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999887532100 001223333 4556666788888887777776666665554444333
No 187
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=28.03 E-value=1.3e+02 Score=34.38 Aligned_cols=95 Identities=22% Similarity=0.275 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCC-CcCCcccccC-CCChhHHHHHHHHHHHHHHHHHH
Q 038418 168 YEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQ-LVMPDNVHLS-GLSPSHFNTVLRHTVKSIRSFVR 245 (487)
Q Consensus 168 ye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~-ls~~d~l~~s-~lsp~~F~~~l~~A~~Sir~F~K 245 (487)
=...+.+++..+..=|.++..+++.++..+.+|..|+........ +.-+.++.-. .++|.+.. +|.. .+|..
T Consensus 42 a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~-~L~~-----~~l~~ 115 (701)
T PF09763_consen 42 ALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIPEEHLE-ALRN-----ASLSS 115 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHhc-----CCCCC
Confidence 334445666666666666667777777777777666543111110 1111111000 24555543 3332 34433
Q ss_pred HH-HHHHHhcCCCHHHHhhhcCCC
Q 038418 246 LM-IDELKSAGWDIDAAANSIQPN 268 (487)
Q Consensus 246 lL-i~~Mk~agwDl~aaa~si~p~ 268 (487)
.= +..+.+|.+.|..|++.|.|.
T Consensus 116 ~~~l~~~e~a~~~L~~Al~~i~~~ 139 (701)
T PF09763_consen 116 PDGLEKIEEAAEALYKALKAIRPD 139 (701)
T ss_pred cccHHHHHHHHHHHHHHHHhcccc
Confidence 33 556677777788888887664
No 188
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.96 E-value=4.1e+02 Score=33.04 Aligned_cols=47 Identities=26% Similarity=0.305 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhh----------hHHHHHHHHHHHHHH
Q 038418 151 KTMVSAEIQELKSLLKTYEIMGKKLESQLKLK----------DSEIIFLKEKLEESN 197 (487)
Q Consensus 151 ~~~l~aei~e~q~ll~tye~~~~kLe~e~~~K----------Dsei~~Lk~kL~e~~ 197 (487)
.+.+.++++.+-.++...+..+..||+++..+ ...|..|+++++++.
T Consensus 822 l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 822 LEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQ 878 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688899999899988899999999985433 335777778888774
No 189
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=27.71 E-value=1.3e+03 Score=29.01 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=22.6
Q ss_pred HHHHHhhHHHHHHHHHhhcC----CCCchhHhHhHHHH
Q 038418 93 LFASISTVKSSYVQLQHAQS----PYDADGIQSADQLV 126 (487)
Q Consensus 93 lFa~VSslKaAY~qLQ~Ah~----PyDpdkI~aAD~~v 126 (487)
+=+....+..+..+++.|-. ||+++...++..++
T Consensus 816 l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL 853 (1353)
T TIGR02680 816 AAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLAL 853 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHH
Confidence 33344455556666665544 99999999976666
No 190
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=27.53 E-value=6.1e+02 Score=25.96 Aligned_cols=83 Identities=22% Similarity=0.172 Sum_probs=57.4
Q ss_pred chhHhHhHHHHHHHHHhhHHHHHHHhh---cCC-CCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038418 116 ADGIQSADQLVVSELKLLSELKQCYLK---KQF-DFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKE 191 (487)
Q Consensus 116 pdkI~aAD~~vVsEL~~Ls~LK~~y~~---~~~-~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~ 191 (487)
.++|.+.-+.+-.||+..-++-.+|.. +.. ++.+........+.+.=--+|-||+.++.|.+++..=..+|..|.+
T Consensus 4 ~~a~~~t~~~i~~eL~~~~~l~~~yta~l~~~~~~~~~~~~~~~~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~V~~l~~ 83 (281)
T PF12018_consen 4 QEAIPATTEHIDTELEEAQELCYRYTAVLEKQSQSPQMESELPPELLKEELYNRRQYEIFLRILLSDLITCAQRVEELIK 83 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999998888874 221 2222111111222333334678999999999999999999999988
Q ss_pred HHHHHHH
Q 038418 192 KLEESNK 198 (487)
Q Consensus 192 kL~e~~~ 198 (487)
+++....
T Consensus 84 ~~~~~l~ 90 (281)
T PF12018_consen 84 RFEAQLE 90 (281)
T ss_pred HHHHHHH
Confidence 8865533
No 191
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.30 E-value=1.5e+02 Score=23.51 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=20.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 178 QLKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 178 e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
++...+.+|..|+.+++++...|..|++++..
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566667777777777777777666554
No 192
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.25 E-value=2.1e+02 Score=34.92 Aligned_cols=52 Identities=23% Similarity=0.252 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
+.++..+.-+-++..+..++..+.++..=|+++..++++++++....+.|++
T Consensus 423 ~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 423 LESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555556667777777788888888888888888887777753
No 193
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=27.02 E-value=2.6e+02 Score=29.47 Aligned_cols=45 Identities=31% Similarity=0.443 Sum_probs=31.5
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 161 LKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 161 ~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
+-.....+|.+-+||.-++..|++.|..|..+|..+......|+.
T Consensus 72 l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leq 116 (307)
T PF10481_consen 72 LMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQ 116 (307)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445567777888888888888888888777776666555553
No 194
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.80 E-value=1.7e+02 Score=24.52 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 169 EIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 169 e~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
+.+...|+.++..-+.+|..|+.++..+...-..+++.|
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555554444444444433
No 195
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.78 E-value=2e+02 Score=30.71 Aligned_cols=87 Identities=21% Similarity=0.204 Sum_probs=51.6
Q ss_pred HHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHH
Q 038418 95 ASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKK 174 (487)
Q Consensus 95 a~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~k 174 (487)
..+..+..-|-+||..|.= ...-|+.++++.+.-. +.|.-|+..++..-..+++
T Consensus 4 eEW~eL~~efq~Lqethr~------------Y~qKleel~~lQ~~C~--------------ssI~~QkkrLk~L~~sLk~ 57 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRS------------YKQKLEELSKLQDKCS--------------SSISHQKKRLKELKKSLKR 57 (330)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 3455677778888877752 3455666666654333 3344455555555566677
Q ss_pred HHHHHhhh-hHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 175 LESQLKLK-DSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 175 Le~e~~~K-Dsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
++.+.... ...|..|++++.+....-..+|.-+
T Consensus 58 ~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 58 CKKSLSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred hccCCChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 76654433 3456777777777666556666544
No 196
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.52 E-value=9.6e+02 Score=26.98 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHh
Q 038418 82 YRISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYL 141 (487)
Q Consensus 82 ~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~ 141 (487)
....++.-|..|++.+..=..|+-.... +.|--++.+..+.+-.-.=...|..|++.|.
T Consensus 283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek-~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 283 KNEEIQERIDQLYDILEREVKARKYVEK-NSDTLPDFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3445556677888877777777766644 3344555555555533322224555566666
No 197
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.49 E-value=2e+02 Score=22.71 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 038418 164 LLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQN 200 (487)
Q Consensus 164 ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n 200 (487)
.+...|..+..|+.+...=-.++..|+.++..+...|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444455555555555556666666666665554
No 198
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=26.49 E-value=8.4e+02 Score=32.14 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 038418 80 LEYRISLEAFLAKLFASISTVKSSYVQLQH 109 (487)
Q Consensus 80 ~~~~~~~eali~~lFa~VSslKaAY~qLQ~ 109 (487)
.++.+.++..+..+-..+-++..++.+||+
T Consensus 1385 ~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~ 1414 (1930)
T KOG0161|consen 1385 QQRLQELEEQIEAANAKNASLEKAKNRLQQ 1414 (1930)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777888888888889889998886
No 199
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=26.38 E-value=7.7e+02 Score=25.90 Aligned_cols=96 Identities=28% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHH-----------HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 135 ELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIM-----------GKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 135 ~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~-----------~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
++|+.|.. +..|+.|-|.--+.||++ .++|+++.+.---|...+|++++.-..+--.-
T Consensus 24 ~ykq~f~~-----------~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q 92 (333)
T KOG1853|consen 24 EYKQHFLQ-----------MREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ 92 (333)
T ss_pred HHHHHHHH-----------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhccCCCcCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhh
Q 038418 204 EKRMNQSGQLVMPDNVHLSGLSPSHFNTVLRHTVKSIRSFVRLMIDELKSAGWDIDAAANS 264 (487)
Q Consensus 204 ekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~~A~~Sir~F~KlLi~~Mk~agwDl~aaa~s 264 (487)
+..|.. .++-+| +|+.=-+--|.+++.+.-||..|-++
T Consensus 93 ~s~Led-------------dlsqt~----------aikeql~kyiReLEQaNDdLErakRa 130 (333)
T KOG1853|consen 93 ESQLED-------------DLSQTH----------AIKEQLRKYIRELEQANDDLERAKRA 130 (333)
T ss_pred HHHHHH-------------HHHHHH----------HHHHHHHHHHHHHHHhccHHHHhhhh
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.30 E-value=2.2e+02 Score=28.91 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=8.3
Q ss_pred hcCCCChHHHHHHHh
Q 038418 335 SRKPKSSFAKFCRAK 349 (487)
Q Consensus 335 ~~~p~s~FskFC~~K 349 (487)
...|++..++=|+++
T Consensus 245 ~~yP~s~~a~~A~~r 259 (263)
T PRK10803 245 KKYPGTDGAKQAQKR 259 (263)
T ss_pred HHCcCCHHHHHHHHH
Confidence 345666665555554
No 201
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=26.25 E-value=2e+02 Score=22.24 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038418 153 MVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESN 197 (487)
Q Consensus 153 ~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~ 197 (487)
.|.+++.++-+++ ++|...++..--|+..||.-+.++.
T Consensus 5 ~l~~ql~~l~~~l-------~elk~~l~~Q~kE~~~LRntI~eC~ 42 (45)
T PF11598_consen 5 QLIKQLSELNQML-------QELKELLRQQIKETRFLRNTIMECQ 42 (45)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666655555 7888888888889999999998774
No 202
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=26.20 E-value=1.1e+02 Score=29.08 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=17.2
Q ss_pred CCchhHhHhHHHHHHHHHhhHHHHHHHhh
Q 038418 114 YDADGIQSADQLVVSELKLLSELKQCYLK 142 (487)
Q Consensus 114 yDpdkI~aAD~~vVsEL~~Ls~LK~~y~~ 142 (487)
|.||.|..- |-||++|.+|++....
T Consensus 99 F~Pd~v~~q----Vp~L~~LlelR~~L~~ 123 (157)
T PF05591_consen 99 FHPDAVAEQ----VPELRKLLELREQLRD 123 (157)
T ss_pred CCHHHHHHh----hHHHHHHHHHHHHHHH
Confidence 567776543 6788888888776663
No 203
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.02 E-value=2.9e+02 Score=22.50 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=29.1
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhh
Q 038418 162 KSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKR 206 (487)
Q Consensus 162 q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekr 206 (487)
+..++.....+.+++.+++....|...|+.++..+.+ ...+|+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~ 66 (85)
T TIGR02209 23 QHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKI 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHH
Confidence 3344445555677778888888888888888877765 3345554
No 204
>PHA00727 hypothetical protein
Probab=25.85 E-value=6.2e+02 Score=25.64 Aligned_cols=89 Identities=29% Similarity=0.409 Sum_probs=50.3
Q ss_pred HHHH---hhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH-
Q 038418 128 SELK---LLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL- 203 (487)
Q Consensus 128 sEL~---~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L- 203 (487)
.||+ .|-|||+.|-+-+...+ .-..+..|-+.||.. |.+.|-.+-..||.+|..-...-++-
T Consensus 12 eelrkaqsleelkqkyee~qkqi~--------dgk~lkrlykvyekr------efelk~~qf~qlkael~kkkkk~kkek 77 (278)
T PHA00727 12 EELRKAQSLEELKQKYEEAQKQIA--------DGKTLKRLYKVYEKR------EFELKKQQFEQLKAELSKKKKKFKKEK 77 (278)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4565 68899999986322111 113445555566532 44455566777887775443322110
Q ss_pred --------hhhhhccCCCcCCcccccCCCChhHHHHHHHHHHHHHHH
Q 038418 204 --------EKRMNQSGQLVMPDNVHLSGLSPSHFNTVLRHTVKSIRS 242 (487)
Q Consensus 204 --------ekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~~A~~Sir~ 242 (487)
.|.+|++ ..+.+|++..+.+.+....-
T Consensus 78 vdv~vkv~kkwinsr------------lftaehyvamlqqs~dglql 112 (278)
T PHA00727 78 VDVRVKVVKKWINSR------------LFTAEHYVAMLQQSKDGLQL 112 (278)
T ss_pred cceeeehhHHHHhhh------------hccHHHHHHHHHhcccchhh
Confidence 1223321 26889999999987766543
No 205
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=25.51 E-value=2.4e+02 Score=33.79 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=22.7
Q ss_pred hhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHH
Q 038418 132 LLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLES 177 (487)
Q Consensus 132 ~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~ 177 (487)
.+-++-+.||+.-.-.--+.-.+..+|.++|-..-+.|....+||+
T Consensus 82 vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ 127 (1265)
T KOG0976|consen 82 VSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQD 127 (1265)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777642222122233445555655555555554444443
No 206
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=25.44 E-value=3.1e+02 Score=28.11 Aligned_cols=70 Identities=24% Similarity=0.311 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 038418 170 IMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTVLRHTVKSIRSFVRLMID 249 (487)
Q Consensus 170 ~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~~A~~Sir~F~KlLi~ 249 (487)
.-..+|++.+++++.+ ..|+.+.......-..|..|.+..- -....| +|++|||-|+.
T Consensus 71 ae~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~~------------edak~F---------aiQ~f~kdLle 128 (236)
T KOG3003|consen 71 AEKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRDV------------EDAKKF---------AIQSFCKDLLE 128 (236)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH---------HHHHHHHHHHH
Confidence 4456677777776666 7888777665555555666654311 011222 79999998875
Q ss_pred HHHhcCCCHHHHhhhc
Q 038418 250 ELKSAGWDIDAAANSI 265 (487)
Q Consensus 250 ~Mk~agwDl~aaa~si 265 (487)
--.. |..|++++
T Consensus 129 VaD~----Le~a~~~v 140 (236)
T KOG3003|consen 129 VADN----LEKATECV 140 (236)
T ss_pred HHHH----HHHHHHhc
Confidence 4322 55555555
No 207
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=24.95 E-value=1.4e+02 Score=26.60 Aligned_cols=79 Identities=25% Similarity=0.342 Sum_probs=49.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCCC-cCCcc-cccC-CCCh----hHHHHHHHHHHHHHHHHHH
Q 038418 173 KKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQL-VMPDN-VHLS-GLSP----SHFNTVLRHTVKSIRSFVR 245 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~l-s~~d~-l~~s-~lsp----~~F~~~l~~A~~Sir~F~K 245 (487)
-.|..+++-=..|..-||++|.++..+|..|..-|+.-... .-.|. -..+ |.+| .....-|+.|+.-|.-...
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~ 83 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSG 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhh
Confidence 46778888889999999999999999999997655442211 11111 1111 2222 3445556767767776666
Q ss_pred HHHHHH
Q 038418 246 LMIDEL 251 (487)
Q Consensus 246 lLi~~M 251 (487)
-++.+.
T Consensus 84 kv~eLq 89 (96)
T PF11365_consen 84 KVMELQ 89 (96)
T ss_pred HHHHHh
Confidence 655543
No 208
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.93 E-value=1.1e+03 Score=27.14 Aligned_cols=30 Identities=13% Similarity=0.358 Sum_probs=15.0
Q ss_pred hhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhh
Q 038418 132 LLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLL 165 (487)
Q Consensus 132 ~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll 165 (487)
++++|...|..+ +|..-.+.++|++++..+
T Consensus 303 ~~~~l~~~y~~~----hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 303 TIADLSTTMLAN----HPRVVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHhhCCC----CHHHHHHHHHHHHHHHHH
Confidence 344455555543 455544555555554443
No 209
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.75 E-value=3.2e+02 Score=27.18 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 156 AEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 156 aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
.+.+++..-++.-+..+..|+...+.-+..+..++++++++..+
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444444333
No 210
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.73 E-value=1.5e+02 Score=23.57 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 168 YEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 168 ye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
.+.+..+|++|-..+--+-...++.|.++...|..|-..|+.
T Consensus 6 l~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 6 LEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred HHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345568888888888888888899999999999988776653
No 211
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.63 E-value=2.7e+02 Score=24.20 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 038418 151 KTMVSAEIQELKSLLKTYEIMGKKLESQ 178 (487)
Q Consensus 151 ~~~l~aei~e~q~ll~tye~~~~kLe~e 178 (487)
...++.|..++.+.+.+||..++.|..|
T Consensus 38 R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 38 RRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 4557777777777777777777666554
No 212
>PRK02224 chromosome segregation protein; Provisional
Probab=24.61 E-value=1.1e+03 Score=27.54 Aligned_cols=19 Identities=0% Similarity=-0.078 Sum_probs=9.4
Q ss_pred EEEecCCCcccccccccch
Q 038418 409 IFQVNKGSRFSEVYMESVA 427 (487)
Q Consensus 409 IF~V~rG~~Fs~vYMEsV~ 427 (487)
++-=+.-+.+|+.....+.
T Consensus 815 ~ilDEp~~~lD~~~~~~~~ 833 (880)
T PRK02224 815 LILDEPTVFLDSGHVSQLV 833 (880)
T ss_pred eEecCCcccCCHHHHHHHH
Confidence 4444555555555544443
No 213
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=24.59 E-value=5.6e+02 Score=23.63 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHH--------------------HHHHHHHhhHHH---HHHH
Q 038418 84 ISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQ--------------------LVVSELKLLSEL---KQCY 140 (487)
Q Consensus 84 ~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~--------------------~vVsEL~~Ls~L---K~~y 140 (487)
.+++.|....|++|. |++-..-+.|++|+--..+|. -+-...+.||.. |-.=
T Consensus 10 d~ldqL~~~f~~si~-----~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elA~dIi~kakq 84 (144)
T PF11221_consen 10 DCLDQLAEQFCNSIG-----YLQRDAPPSPLSPNDPSISDPKPQAPPQQQQQAEPAPDPPEEFEENIKELATDIIRKAKQ 84 (144)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHTTGGGG-----------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----hhccCCCCCCCCCCcccccCccccchhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHH
Confidence 345666777777764 888888888888887433332 111222233321 1000
Q ss_pred hhcCCCCCch-hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 141 LKKQFDFSPE-KTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 141 ~~~~~~~~~~-~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
...=.+.-|. ...-+.+.+.++.|-...+.+.++|+..++.+|.....++..|.++
T Consensus 85 Ie~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~i 141 (144)
T PF11221_consen 85 IEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREI 141 (144)
T ss_dssp HHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011122 1123344445555555666666777777777776666666666543
No 214
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.52 E-value=1.3e+03 Score=29.70 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=56.7
Q ss_pred HHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHH-hhHHH--HHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHH
Q 038418 96 SISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELK-LLSEL--KQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMG 172 (487)
Q Consensus 96 ~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~-~Ls~L--K~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~ 172 (487)
...-++.+-.+||.-=+|||++.-..|..-= .||. +|+.- ++.+..+ +.+...+||+.+ ...+
T Consensus 1032 ~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~------~~~~re~EIe~L-------~kkL 1097 (1486)
T PRK04863 1032 KRQMLQELKQELQDLGVPADSGAEERARARR-DELHARLSANRSRRNQLEK------QLTFCEAEMDNL-------TKKL 1097 (1486)
T ss_pred HHHHHHHHHHHHHHcCCCCCccHHHHHHHhH-HHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHH-------HHHH
Confidence 4444555566777788999988776665543 4544 22221 1111111 233344444444 4444
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH--hhHhHhhhhhccC
Q 038418 173 KKLESQLKLKDSEIIFLKEKLEESNK--QNKALEKRMNQSG 211 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~Lk~kL~e~~~--~n~~Lekrl~~s~ 211 (487)
++++.++...+.+|..+|.+=.-..+ .+...|+||+...
T Consensus 1098 ~~~~~e~~~~re~I~~aK~~W~~v~~~~~~~~~~~~l~~~~ 1138 (1486)
T PRK04863 1098 RKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRE 1138 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHhh
Confidence 77777777777777777776554432 3345566666543
No 215
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=24.47 E-value=2.7e+02 Score=28.53 Aligned_cols=30 Identities=23% Similarity=0.578 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHH
Q 038418 88 AFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSEL 130 (487)
Q Consensus 88 ali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL 130 (487)
.||..||+-+...... |=||| ||.+|-..|
T Consensus 7 qLI~~lf~RL~~ae~~---------prD~e----Ae~lI~~~~ 36 (247)
T PF09849_consen 7 QLIDDLFSRLKQAEAQ---------PRDPE----AEALIAQAL 36 (247)
T ss_pred HHHHHHHHHHHhccCC---------CCCHH----HHHHHHHHH
Confidence 5788888877665543 77776 566655444
No 216
>PRK14143 heat shock protein GrpE; Provisional
Probab=24.05 E-value=6.4e+02 Score=25.64 Aligned_cols=25 Identities=4% Similarity=0.117 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHhhhcC
Q 038418 238 KSIRSFVRLMIDELKSAGWDIDAAANSIQ 266 (487)
Q Consensus 238 ~Sir~F~KlLi~~Mk~agwDl~aaa~si~ 266 (487)
.++.+|++-|+.-+.+ |..|+..+.
T Consensus 114 ~a~~~~~~~lLpV~Dn----LerAl~~~~ 138 (238)
T PRK14143 114 QLKCNTLSEILPVVDN----FERARQQLK 138 (238)
T ss_pred HHHHHHHHHHHHHHhH----HHHHHhccc
Confidence 3556666666655543 555555443
No 217
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=23.91 E-value=2.7e+02 Score=29.57 Aligned_cols=86 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHHHHHHHHHHHH
Q 038418 166 KTYEIMGKKLESQLKLKD---SEIIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTVLRHTVKSIRS 242 (487)
Q Consensus 166 ~tye~~~~kLe~e~~~KD---sei~~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~~A~~Sir~ 242 (487)
...+-|+.+|+.|+..|- .+...|+++-..+...|....++| ..|...|+.-.++++.
T Consensus 87 ~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L-------------------~~l~~~L~~l~~a~~p 147 (355)
T PF09766_consen 87 DEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFL-------------------DSLPPQLKSLKKAAKP 147 (355)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhcCCCHHHHhhhc-CC-Cccc
Q 038418 243 FVRLMIDELKSAGWDIDAAANSI-QP-NVVY 271 (487)
Q Consensus 243 F~KlLi~~Mk~agwDl~aaa~si-~p-~v~y 271 (487)
+-+.|-..... .|.....+..+ .| ++.|
T Consensus 148 lq~~l~~~~~~-~~~~~~~a~~LP~PLyvLY 177 (355)
T PF09766_consen 148 LQEYLGLPHTK-KRKQHELAELLPPPLYVLY 177 (355)
T ss_pred HHHHhCCCccc-hhhhHHHHHhCCccHHHHH
No 218
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=23.76 E-value=7.1e+02 Score=24.85 Aligned_cols=27 Identities=7% Similarity=0.249 Sum_probs=18.7
Q ss_pred CcchHHHHHHHHHHHhccCC--CCCCCCC
Q 038418 275 DHKCFAFESFVCREMFDAFH--YPNYSPA 301 (487)
Q Consensus 275 ~h~kfalEA~v~r~MF~gFe--~~~F~~~ 301 (487)
.+.-+-+.+|+|+.||..=+ +..|++.
T Consensus 172 tDnI~ilidy~c~kf~~~~~qir~~fgIP 200 (209)
T COG5124 172 TDNIEILIDYLCKKFFLKPEQIRKEFGIP 200 (209)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHhcCCC
Confidence 34568999999999998544 2444443
No 219
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=23.56 E-value=3.4e+02 Score=20.75 Aligned_cols=36 Identities=17% Similarity=0.383 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
+..++.+|..+| ..++..+..=...+..-..+|..+
T Consensus 23 i~~ev~~Q~~~l-------d~i~~~vd~~~~~l~~~~~~l~ka 58 (63)
T PF05739_consen 23 IGEEVEEQNEML-------DRIEDNVDRANENLKKGNKKLKKA 58 (63)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCHhhH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665 444444444444444444444443
No 220
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.44 E-value=1.5e+03 Score=28.09 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=45.4
Q ss_pred hhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCC---chh-hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 038418 117 DGIQSADQLVVSELKLLSELKQCYLKKQFDFS---PEK-TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEK 192 (487)
Q Consensus 117 dkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~---~~~-~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~k 192 (487)
+++.....-+.+=+..|+.|+..+........ |.. ..+..--.+++.+.+.|+....+|..++...++++..++.+
T Consensus 249 ~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~ 328 (1201)
T PF12128_consen 249 DKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSE 328 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555556666666666664211111 111 11222223445555666666666677777777777777777
Q ss_pred HHHHHHhh
Q 038418 193 LEESNKQN 200 (487)
Q Consensus 193 L~e~~~~n 200 (487)
|+.+..+-
T Consensus 329 L~~i~~~~ 336 (1201)
T PF12128_consen 329 LDEIEQQK 336 (1201)
T ss_pred HHHHHHHH
Confidence 77665543
No 221
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=23.35 E-value=4.1e+02 Score=27.39 Aligned_cols=47 Identities=30% Similarity=0.374 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
+.++++..+.|.-++..|.-...|+...+..--|+..||.+++++.-
T Consensus 159 eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 159 EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 45777888888888888877778887777777788888888877643
No 222
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=23.17 E-value=2.4e+02 Score=22.03 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 171 MGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 171 ~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
.+.++|.++..||.+|..|+.=++.+..
T Consensus 8 ~l~~~e~~~~~k~~~v~eLe~YiD~LL~ 35 (48)
T PF09457_consen 8 LLKKQEEENARKDSRVRELEDYIDNLLV 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488999999999999999999987755
No 223
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.13 E-value=2.6e+02 Score=32.02 Aligned_cols=51 Identities=33% Similarity=0.488 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhh
Q 038418 156 AEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKR 206 (487)
Q Consensus 156 aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekr 206 (487)
.+++++|..+......+.+++.+++.-.+++..+.+++.+....+..+|+.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~ 378 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEE 378 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666666666666666666666653
No 224
>smart00338 BRLZ basic region leucin zipper.
Probab=23.08 E-value=2.6e+02 Score=22.02 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=11.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhHh
Q 038418 175 LESQLKLKDSEIIFLKEKLEESNKQNKA 202 (487)
Q Consensus 175 Le~e~~~KDsei~~Lk~kL~e~~~~n~~ 202 (487)
||.++..=..+...|+.+++.+...+..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444333
No 225
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.06 E-value=2.3e+02 Score=31.82 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 153 MVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 153 ~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
.|.-+++-|-..+++|.+.+++++.++..=.-+=.--=.||+++.+++..|++|+.+
T Consensus 338 dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLR 394 (508)
T KOG3091|consen 338 DLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILR 394 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777888888888877655432221112234566777777788877543
No 226
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.05 E-value=9.1e+02 Score=25.54 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=16.7
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcCCCCch
Q 038418 90 LAKLFASISTVKSSYVQLQHAQSPYDAD 117 (487)
Q Consensus 90 i~~lFa~VSslKaAY~qLQ~Ah~PyDpd 117 (487)
+.++=+.+.....+..+.+..|-=+|++
T Consensus 180 l~~~~~~l~~ae~~l~~fr~~~~i~~~~ 207 (444)
T TIGR03017 180 IAALREDLARAQSKLSAYQQEKGIVSSD 207 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 4444445555566666777777666664
No 227
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=22.78 E-value=3.8e+02 Score=32.16 Aligned_cols=71 Identities=24% Similarity=0.235 Sum_probs=42.0
Q ss_pred HHHHH-hhHHHHHHHhhcCC------------CCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038418 127 VSELK-LLSELKQCYLKKQF------------DFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKL 193 (487)
Q Consensus 127 VsEL~-~Ls~LK~~y~~~~~------------~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL 193 (487)
++.|+ +|++|-++|...+. +.+-+...|++.-+|+ |+.++.|..++..--..-..||++.
T Consensus 515 ~~~lr~~l~eLEqr~~qQqsa~~Ll~~f~kr~~~~l~ae~lE~~~~e~-------eal~E~ls~~~s~~~EqR~~lRq~~ 587 (1480)
T COG3096 515 VQPLRMRLSELEQRLRQQQSAERLLADFCKRQGKNLDAEELEALHQEL-------EALIESLSDSVSNAREQRMALRQEQ 587 (1480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666 88999888875322 1122233344444444 4555777777666666667778877
Q ss_pred HHHHHhhHhHh
Q 038418 194 EESNKQNKALE 204 (487)
Q Consensus 194 ~e~~~~n~~Le 204 (487)
+++...-..+.
T Consensus 588 e~L~~~~~~~~ 598 (1480)
T COG3096 588 EQLQSRIQSLM 598 (1480)
T ss_pred HHHHHHHHHHH
Confidence 77755444443
No 228
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=22.78 E-value=1.5e+03 Score=27.79 Aligned_cols=98 Identities=22% Similarity=0.186 Sum_probs=60.9
Q ss_pred HHHHHHHHHHh----hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCC-----------------
Q 038418 154 VSAEIQELKSL----LKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQ----------------- 212 (487)
Q Consensus 154 l~aei~e~q~l----l~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~----------------- 212 (487)
+.-+++++|.- ...|-..+..|+..+..||.+...++.++++.......+++-+++-+.
T Consensus 506 l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~tQ~~~~~ 585 (980)
T KOG0980|consen 506 LLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELDSSASTEAGITQLQDDL 585 (980)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccchHHHHHHHHHHh
Confidence 33445554433 334556678889999999999999998886553333333332222210
Q ss_pred -------------------CcCCc-ccccC-CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038418 213 -------------------LVMPD-NVHLS-GLSPSHFNTVLRHTVKSIRSFVRLMIDEL 251 (487)
Q Consensus 213 -------------------ls~~d-~l~~s-~lsp~~F~~~l~~A~~Sir~F~KlLi~~M 251 (487)
++-+| .++.. ..+|++.+..+..+...+-+|.+.+-+.+
T Consensus 586 ~~~il~~~~~~~~q~lq~al~~ld~P~~~~~~~~p~~Llst~~~~s~n~~~~e~~~~~yl 645 (980)
T KOG0980|consen 586 NDPILDGSLASGIQALQNALYQLDSPLHWRCLTSPDFLLSTAENASVNATQFETSFNNYL 645 (980)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCcccCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11111 12222 36889999999999999999998765554
No 229
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=22.68 E-value=5.6e+02 Score=24.45 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=26.2
Q ss_pred CchhHhHhHHHHHHHHHhhHHHHHHHhh
Q 038418 115 DADGIQSADQLVVSELKLLSELKQCYLK 142 (487)
Q Consensus 115 DpdkI~aAD~~vVsEL~~Ls~LK~~y~~ 142 (487)
||+++..|+.-+--.|..+-+|=+.|..
T Consensus 120 ~P~~l~~a~~Fl~~yLp~~~~l~~kY~~ 147 (199)
T PF10112_consen 120 DPERLTQARKFLYYYLPTAVKLLEKYAE 147 (199)
T ss_pred CHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7899999999999999999999999996
No 230
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=22.54 E-value=1e+03 Score=25.78 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhh
Q 038418 80 LEYRISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLK 142 (487)
Q Consensus 80 ~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~ 142 (487)
.+..+....+-..+...+.-+..+|.++|.++ +.++.+.+++-+--+.+.--+.+|..
T Consensus 375 a~~~~a~~~y~~t~~~a~~eV~~a~~~~~~~~-----~~~~~~~~~~~~a~~~~~la~~ry~~ 432 (478)
T PRK11459 375 AQSNLSIASYNKAVVDAVNDVARAASQVETLA-----EKNQHQQQIERDALRVVGLAQARFNA 432 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33444555566668888889999999999876 67888888888777777777778875
No 231
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=22.39 E-value=9.1e+02 Score=25.25 Aligned_cols=50 Identities=26% Similarity=0.252 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
...+.++....+..-+.-+..++.+++++..++..+++++.++..+-..|
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555556666666666655555555544443333
No 232
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.32 E-value=4.9e+02 Score=29.60 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 156 AEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 156 aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
.++++++..++.++...++...++- +..++..+++.++++..+
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhc
Confidence 5567777777777777777777777 466777888888777664
No 233
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=21.95 E-value=3.8e+02 Score=23.39 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
++++.....-=.-...+=......++.||..|+.+|..+.+....+++++..
T Consensus 55 lken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 55 LKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 234
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=21.77 E-value=1.4e+02 Score=34.39 Aligned_cols=34 Identities=35% Similarity=0.228 Sum_probs=29.1
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038418 162 KSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEE 195 (487)
Q Consensus 162 q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e 195 (487)
++.+.+.-..+..|++++.+|+++|..|+++|..
T Consensus 309 ~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 309 VEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666778999999999999999999999973
No 235
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.63 E-value=1.7e+03 Score=28.41 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=9.3
Q ss_pred HHHHHHHHhhHHHHHHH
Q 038418 90 LAKLFASISTVKSSYVQ 106 (487)
Q Consensus 90 i~~lFa~VSslKaAY~q 106 (487)
+++|-..++.||.-|+|
T Consensus 1621 ~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1621 LGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555556666655544
No 236
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.47 E-value=3.8e+02 Score=22.96 Aligned_cols=70 Identities=29% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCchhHhHhHHHHHHHHHhhHHHHHHHh------hcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 038418 112 SPYDADGIQSADQLVVSELKLLSELKQCYL------KKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKL 181 (487)
Q Consensus 112 ~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~------~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~ 181 (487)
.+.+.|.|...|+-.-+-+..+-.|+..-- +..-..+.....+.+++.++..-++.+|..+..++.++..
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 237
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=21.43 E-value=83 Score=25.72 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhHhHhh
Q 038418 184 SEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 184 sei~~Lk~kL~e~~~~n~~Lek 205 (487)
.|++.||+++.++..+|..||.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~ 35 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEE 35 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888864
No 238
>PRK01156 chromosome segregation protein; Provisional
Probab=21.35 E-value=1.4e+03 Score=26.92 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhcCC
Q 038418 87 EAFLAKLFASISTVKSSYVQLQHAQSP 113 (487)
Q Consensus 87 eali~~lFa~VSslKaAY~qLQ~Ah~P 113 (487)
..++.++| .+..++.+|-+|....--
T Consensus 152 ~~~ld~~~-~~~~~~~~~~~~~~~~~~ 177 (895)
T PRK01156 152 KKILDEIL-EINSLERNYDKLKDVIDM 177 (895)
T ss_pred HHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 34566666 455666666665554433
No 239
>PRK14127 cell division protein GpsB; Provisional
Probab=21.31 E-value=2.1e+02 Score=25.92 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=17.2
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 162 KSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 162 q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
..++.+||.+.++ +..|++++..+..+...++.|+.
T Consensus 33 d~V~~dye~l~~e-----------~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 33 DDVIKDYEAFQKE-----------IEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456667666442 33444444444444444444433
No 240
>PHA03011 hypothetical protein; Provisional
Probab=21.24 E-value=4.1e+02 Score=24.14 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 170 IMGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 170 ~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
--.+.|+-=++..|.||+.||.+++.+...
T Consensus 85 Ne~k~~~~iIQdn~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 85 NEIKDLEIIIQDNDDEIHFLRAEIDKLKEN 114 (120)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 335566666778899999999999877553
No 241
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=21.23 E-value=3.9e+02 Score=25.84 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhHhHhhhhhc
Q 038418 168 YEIMGKKLESQLKLKDSEII-----FLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 168 ye~~~~kLe~e~~~KDsei~-----~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
-+..+.+||..+..|+.+|+ .-|.+++|....-..||.|+..
T Consensus 97 l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 97 ITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455777888888777543 3456666666666666666544
No 242
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.17 E-value=1e+02 Score=28.23 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhHhHhhh
Q 038418 184 SEIIFLKEKLEESNKQNKALEKR 206 (487)
Q Consensus 184 sei~~Lk~kL~e~~~~n~~Lekr 206 (487)
.|++-||+++.|+..+|+.||.-
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999888763
No 243
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.14 E-value=4.4e+02 Score=32.30 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=12.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 174 KLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 174 kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
+|+++++.+-.|+..+++++.++...
T Consensus 487 ~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 487 KLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555444433
No 244
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=21.11 E-value=6.7e+02 Score=23.27 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=62.1
Q ss_pred HHHHHhhcCC-CCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhh--HHHHHHHHHHhhhHHHHH--HHHHHHH
Q 038418 104 YVQLQHAQSP-YDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPEKTM--VSAEIQELKSLLKTYEIM--GKKLESQ 178 (487)
Q Consensus 104 Y~qLQ~Ah~P-yDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~--l~aei~e~q~ll~tye~~--~~kLe~e 178 (487)
|+.-|.+|.| +.+++++-.-++......+++..-.-|.-. --++. +.--|=-.| .++|+.. +.+|++.
T Consensus 3 n~a~~~~~~~~q~~~a~q~~~~vl~k~~~~~t~~EKvly~~-----~~va~L~vai~ii~~q--~~~yqvq~ei~~Le~k 75 (120)
T COG4839 3 NVAYQAAKPDKQQRQAEQPKKQVLRKKRKKFTKVEKVLYTT-----LAVAALVVAISIISVQ--TKAYQVQGEITDLESK 75 (120)
T ss_pred hHHHhhcCcccccccccCccchHHHHHHHHhhhHHHHHHHH-----HHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHH
Confidence 4455666665 677888888899999998888664333321 01111 111121222 2334433 5789999
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 179 LKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 179 ~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
+.....|...|+.+..|+.+.-+-|+.
T Consensus 76 Is~q~~e~~dlkqeV~dLss~eRIldi 102 (120)
T COG4839 76 ISEQKTENDDLKQEVKDLSSPERILDI 102 (120)
T ss_pred HHHHHhhhhhHHHHHHHhccHHHHHHH
Confidence 999999999999999999887777653
No 245
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.89 E-value=7.8e+02 Score=23.91 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHhhhc
Q 038418 238 KSIRSFVRLMIDELKSAGWDIDAAANSI 265 (487)
Q Consensus 238 ~Sir~F~KlLi~~Mk~agwDl~aaa~si 265 (487)
.++.+|++.|+.-+.. |..|++..
T Consensus 66 ~a~~~~~~~LLpv~Dn----lerAl~~~ 89 (178)
T PRK14161 66 YAIATFAKELLNVSDN----LSRALAHK 89 (178)
T ss_pred HHHHHHHHHHhhHHhH----HHHHHhcC
Confidence 4567788877776553 55555543
No 246
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=20.87 E-value=9.6e+02 Score=24.95 Aligned_cols=70 Identities=23% Similarity=0.174 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHH-HHHHhhHHHHHHHh-hcCCCCCchhhhHHHHHHHHHHh
Q 038418 87 EAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVV-SELKLLSELKQCYL-KKQFDFSPEKTMVSAEIQELKSL 164 (487)
Q Consensus 87 eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vV-sEL~~Ls~LK~~y~-~~~~~~~~~~~~l~aei~e~q~l 164 (487)
+++..+|=-.+--+..-|.|+ +||+.-|.-++ ++|++|--=|++.- ..++|... ...+.||.-|+|..
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~---------~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~-q~~~~ae~seLq~r 229 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQV---------DKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEF-QQHYVAEKSELQKR 229 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHH-HHHHHHHHHHHHHH
Confidence 455555555555555566665 78888887776 78888865554433 12333221 23344555454444
Q ss_pred hh
Q 038418 165 LK 166 (487)
Q Consensus 165 l~ 166 (487)
++
T Consensus 230 ~~ 231 (289)
T COG4985 230 LA 231 (289)
T ss_pred HH
Confidence 43
No 247
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=20.83 E-value=2.4e+02 Score=27.33 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=17.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 174 KLESQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 174 kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
+|+.||.+-..||..||+-|..-.++-..|-+||
T Consensus 33 eLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444555555555555554444444444443
No 248
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.82 E-value=1.4e+02 Score=26.36 Aligned_cols=31 Identities=6% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 178 QLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 178 e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
.......++..++++++++...|..|+.++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 249
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.69 E-value=4.7e+02 Score=28.32 Aligned_cols=36 Identities=33% Similarity=0.324 Sum_probs=23.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038418 160 ELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEE 195 (487)
Q Consensus 160 e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e 195 (487)
|+..-.+-.+++.+.||.|+..=+..|+-|+.+.+|
T Consensus 243 eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 243 ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333444445666677777776666777778888777
No 250
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.46 E-value=4.2e+02 Score=27.72 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.4
Q ss_pred HHHHHH
Q 038418 342 FAKFCR 347 (487)
Q Consensus 342 FskFC~ 347 (487)
|+.||.
T Consensus 252 ~~~~~~ 257 (314)
T PF04111_consen 252 LAEFVE 257 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334443
No 251
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.45 E-value=4.6e+02 Score=22.15 Aligned_cols=10 Identities=10% Similarity=0.454 Sum_probs=4.4
Q ss_pred HHHHHhhHHH
Q 038418 93 LFASISTVKS 102 (487)
Q Consensus 93 lFa~VSslKa 102 (487)
+|+++..++.
T Consensus 8 i~~~l~~~~~ 17 (83)
T PF07544_consen 8 IFDILHQISK 17 (83)
T ss_pred HHHHHHHHhh
Confidence 4444444443
No 252
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=20.30 E-value=1e+03 Score=28.03 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhh--HHH---HHHHhhcCCCCCchhhhHHHH
Q 038418 83 RISLEAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLL--SEL---KQCYLKKQFDFSPEKTMVSAE 157 (487)
Q Consensus 83 ~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~L--s~L---K~~y~~~~~~~~~~~~~l~ae 157 (487)
+..+|.-=-.|.+.||.||.-|+-|-.-+.-| .+|.+-+..++ .|+.++ +++ +-.|.. ++.... .-.|.
T Consensus 169 rtsLETqKlDLmaevSeLKLkltalEkeq~e~-E~K~R~se~l~-qevn~~kv~e~~~erlqye~-klkstk---~e~a~ 242 (861)
T KOG1899|consen 169 RTSLETQKLDLMAEVSELKLKLTALEKEQNET-EKKLRLSENLM-QEVNQSKVGEVVQERLQYET-KLKSTK---GEMAP 242 (861)
T ss_pred hhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhH-HHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHh-hccccc---chhhh
Confidence 45555555678999999999999997666544 35555554432 344311 222 112222 222211 12344
Q ss_pred HHHHHHh-----hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 158 IQELKSL-----LKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 158 i~e~q~l-----l~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
++||++. ++-.+..+++|.++-..+-..+..||..|+++.+.|..-++
T Consensus 243 L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr 295 (861)
T KOG1899|consen 243 LREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDR 295 (861)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhh
Confidence 5555443 33445567777777676667777899999988888844443
No 253
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=20.19 E-value=7.6e+02 Score=23.51 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=40.1
Q ss_pred HHHHhhHHHHHHHhhc---CCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 128 SELKLLSELKQCYLKK---QFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 128 sEL~~Ls~LK~~y~~~---~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
-.|+.|++=++.|+.+ .+..+ ...++.+.-|..|.++|.++.+....+....-.++..++.+.+-...
T Consensus 37 ~qL~~l~~y~~ey~q~~~~k~~~G----~s~~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~ek~~~ 107 (148)
T COG2882 37 EQLKMLSGYRNEYEQNLNEKLKSG----VSAAQWQNYQQFISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQIE 107 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999964 12221 23345556566666666666666665555555555555555444333
No 254
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=20.13 E-value=4.7e+02 Score=30.19 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 151 KTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 151 ~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
...+.++..++++..+.-+....+++.+.+..+.++.+|+++++++......+
T Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~~~ee~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (660)
T COG1269 87 VEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEEL 139 (660)
T ss_pred chhHHHhhhhHHHHHHHHHHHHHhhhHHHHhHHHHHHHHhhhHHHHHHHHHHh
Confidence 34466777777777755566666677788888888888888887776655444
No 255
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.10 E-value=7.9e+02 Score=24.44 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 156 AEIQELKSLLKTYEIMGKKLESQLKLK--DSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 156 aei~e~q~ll~tye~~~~kLe~e~~~K--Dsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
.+....+.-++..++..++|+.-++.. =.++..+..+|.+....--.++.++
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444322 2355566666666655555555543
Done!