Query 038418
Match_columns 487
No_of_seqs 112 out of 134
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 94.9 0.038 1.3E-06 45.0 5.3 33 165-197 35-67 (72)
2 1zxa_A CGMP-dependent protein 94.7 0.032 1.1E-06 44.8 4.5 45 154-198 9-53 (67)
3 1t6f_A Geminin; coiled-coil, c 82.4 1.5 5.2E-05 31.2 3.9 25 173-197 10-34 (37)
4 3a7p_A Autophagy protein 16; c 78.4 16 0.00055 33.5 10.4 21 81-101 35-55 (152)
5 3hnw_A Uncharacterized protein 78.0 28 0.00096 31.0 11.7 54 154-207 80-133 (138)
6 3nmd_A CGMP dependent protein 76.2 6.2 0.00021 32.1 6.2 44 166-209 22-65 (72)
7 3oja_B Anopheles plasmodium-re 76.0 79 0.0027 32.9 16.5 52 158-209 532-583 (597)
8 1m1j_C Fibrinogen gamma chain; 75.8 13 0.00043 38.9 10.2 46 153-198 88-133 (409)
9 3a7p_A Autophagy protein 16; c 75.6 9.7 0.00033 34.9 8.1 56 153-208 65-120 (152)
10 3oja_B Anopheles plasmodium-re 75.0 30 0.001 36.1 12.9 67 132-198 485-551 (597)
11 3a7o_A Autophagy protein 16; c 75.0 15 0.00053 29.8 8.1 57 152-208 14-70 (75)
12 3efg_A Protein SLYX homolog; x 73.3 9.9 0.00034 30.9 6.9 56 149-204 7-62 (78)
13 2no2_A HIP-I, huntingtin-inter 72.5 14 0.00047 31.8 7.9 54 154-207 34-91 (107)
14 3hnw_A Uncharacterized protein 70.9 14 0.00048 33.0 7.9 53 156-208 75-127 (138)
15 3a7o_A Autophagy protein 16; c 68.2 12 0.00041 30.4 6.1 28 167-194 15-42 (75)
16 1dkg_A Nucleotide exchange fac 66.7 5.8 0.0002 37.4 4.8 56 406-482 138-194 (197)
17 4h22_A Leucine-rich repeat fli 66.0 6.9 0.00024 33.8 4.6 81 131-213 2-87 (103)
18 1lwu_C Fibrinogen gamma chain; 65.4 13 0.00045 37.6 7.3 47 152-198 8-54 (323)
19 3mq9_A Bone marrow stromal ant 65.0 12 0.00042 38.1 7.2 66 125-190 397-470 (471)
20 1j1e_C Troponin I, TNI; THIN f 64.8 31 0.0011 32.4 9.1 73 122-197 27-106 (180)
21 3ghg_C Fibrinogen gamma chain; 63.8 23 0.0008 37.0 9.0 64 135-198 63-133 (411)
22 3ol1_A Vimentin; structural ge 62.8 41 0.0014 29.0 9.1 54 152-208 37-93 (119)
23 3a6m_A Protein GRPE, HSP-70 co 61.3 9.9 0.00034 35.3 5.1 53 407-483 116-169 (177)
24 3ghg_A Fibrinogen alpha chain; 60.9 14 0.00049 39.9 6.8 82 156-243 131-232 (562)
25 3ajw_A Flagellar FLIJ protein; 59.8 82 0.0028 26.8 12.0 79 126-205 38-116 (150)
26 3swk_A Vimentin; cytoskeleton, 59.7 23 0.00078 29.1 6.6 56 151-209 16-74 (86)
27 4fla_A Regulation of nuclear P 56.7 1.1E+02 0.0039 27.5 11.6 60 150-209 87-146 (152)
28 3vem_A Helicase protein MOM1; 53.9 24 0.00082 31.0 5.9 73 110-192 28-101 (115)
29 3u1c_A Tropomyosin alpha-1 cha 53.3 54 0.0018 27.5 8.0 55 154-208 42-96 (101)
30 2oa5_A Hypothetical protein BQ 52.8 48 0.0016 28.9 7.6 62 183-251 7-68 (110)
31 3u59_A Tropomyosin beta chain; 51.4 60 0.0021 27.0 8.0 55 154-208 42-96 (101)
32 1m1j_B Fibrinogen beta chain; 49.7 1.2E+02 0.0041 32.2 11.6 54 155-208 134-192 (464)
33 4ani_A Protein GRPE; chaperone 48.6 6.8 0.00023 37.6 1.8 47 414-480 164-211 (213)
34 3vmx_A Voltage-gated hydrogen 48.4 50 0.0017 24.9 6.1 22 173-194 21-42 (48)
35 4emc_A Monopolin complex subun 47.9 19 0.00064 34.1 4.7 29 173-201 30-58 (190)
36 3swk_A Vimentin; cytoskeleton, 46.5 33 0.0011 28.1 5.5 68 124-191 17-84 (86)
37 2e7s_A RAB guanine nucleotide 44.9 20 0.00067 32.3 4.1 75 154-235 13-90 (135)
38 1zxa_A CGMP-dependent protein 44.8 20 0.00068 28.7 3.7 41 170-210 11-51 (67)
39 1l8d_A DNA double-strand break 44.5 1.1E+02 0.0039 25.1 8.6 15 126-140 29-43 (112)
40 1i84_S Smooth muscle myosin he 43.9 51 0.0017 38.3 8.4 43 154-196 925-967 (1184)
41 3oja_A Leucine-rich immune mol 43.8 1.1E+02 0.0037 31.2 10.1 79 130-208 380-459 (487)
42 2ocy_A RAB guanine nucleotide 43.5 60 0.002 29.7 7.2 61 172-239 46-109 (154)
43 2q6q_A Spindle POLE BODY compo 43.5 36 0.0012 27.5 5.0 34 173-206 6-46 (74)
44 3e21_A HFAF1, FAS-associated f 43.5 13 0.00045 27.4 2.3 19 249-267 26-44 (45)
45 1wt6_A Myotonin-protein kinase 41.9 53 0.0018 27.2 5.9 14 165-178 47-60 (81)
46 1wlq_A Geminin; coiled-coil; 2 41.9 44 0.0015 27.8 5.4 25 173-197 41-65 (83)
47 3ol1_A Vimentin; structural ge 40.6 1.1E+02 0.0038 26.2 8.2 45 151-195 64-108 (119)
48 3na7_A HP0958; flagellar bioge 38.7 2.6E+02 0.0089 26.5 16.5 102 87-196 31-137 (256)
49 1j1d_B Troponin T, TNT; THIN f 38.5 38 0.0013 29.2 4.8 38 159-196 45-89 (106)
50 3na7_A HP0958; flagellar bioge 38.0 89 0.003 29.8 7.9 56 154-209 30-85 (256)
51 2v71_A Nuclear distribution pr 38.0 1.8E+02 0.0061 27.4 9.7 54 153-206 67-124 (189)
52 3m91_A Proteasome-associated A 37.6 1.1E+02 0.0036 23.2 6.6 43 155-197 8-50 (51)
53 3iv1_A Tumor susceptibility ge 36.9 46 0.0016 27.3 4.8 34 166-199 42-75 (78)
54 1fzc_C Fibrin; blood coagulati 36.2 30 0.001 35.0 4.3 44 155-198 3-46 (319)
55 2eqb_B RAB guanine nucleotide 35.3 81 0.0028 26.8 6.2 56 172-234 14-69 (97)
56 1ik9_A DNA repair protein XRCC 35.1 2.6E+02 0.0091 26.4 10.5 68 168-253 137-204 (213)
57 3s4r_A Vimentin; alpha-helix, 34.9 1.7E+02 0.006 24.1 8.2 25 183-207 55-79 (93)
58 2fxo_A Myosin heavy chain, car 33.5 99 0.0034 26.8 6.8 47 152-198 79-125 (129)
59 3vkg_A Dynein heavy chain, cyt 33.4 1.9E+02 0.0065 37.8 11.6 53 154-206 2012-2064(3245)
60 2yy0_A C-MYC-binding protein; 33.3 56 0.0019 24.7 4.4 21 188-208 30-50 (53)
61 3qh9_A Liprin-beta-2; coiled-c 33.0 1.1E+02 0.0038 25.3 6.5 22 172-193 56-77 (81)
62 3m9b_A Proteasome-associated A 32.9 35 0.0012 33.5 4.1 42 155-196 53-94 (251)
63 1wt6_A Myotonin-protein kinase 32.5 1.6E+02 0.0054 24.4 7.3 14 152-165 17-30 (81)
64 2xdj_A Uncharacterized protein 31.5 2E+02 0.007 23.5 7.9 34 173-206 23-56 (83)
65 2v4h_A NF-kappa-B essential mo 31.4 2.6E+02 0.0089 24.3 9.9 44 157-203 63-109 (110)
66 2dfs_A Myosin-5A; myosin-V, in 31.2 1E+02 0.0034 35.9 8.1 38 172-209 979-1016(1080)
67 1j1d_C Troponin I, TNI; THIN f 31.0 2.8E+02 0.0097 24.6 11.3 74 122-198 27-107 (133)
68 2k48_A Nucleoprotein; viral pr 30.9 1.5E+02 0.0052 25.6 7.2 23 179-201 77-99 (107)
69 1t2k_D Cyclic-AMP-dependent tr 30.5 1.1E+02 0.0039 23.0 5.9 22 173-194 32-53 (61)
70 1gd2_E Transcription factor PA 28.9 98 0.0034 24.7 5.4 29 173-201 39-67 (70)
71 3u06_A Protein claret segregat 28.4 95 0.0032 32.1 6.7 48 152-206 6-53 (412)
72 3s4r_A Vimentin; alpha-helix, 28.4 1E+02 0.0034 25.6 5.6 42 152-193 52-93 (93)
73 1gd2_E Transcription factor PA 28.3 66 0.0023 25.7 4.3 36 158-193 31-66 (70)
74 4etp_A Kinesin-like protein KA 27.8 95 0.0032 31.9 6.6 32 172-203 19-50 (403)
75 3q8t_A Beclin-1; autophagy, AT 27.8 2.6E+02 0.009 23.2 8.2 52 154-205 9-60 (96)
76 2zqm_A Prefoldin beta subunit 27.7 1.2E+02 0.004 25.0 6.1 41 158-198 72-112 (117)
77 3ghg_A Fibrinogen alpha chain; 27.4 78 0.0027 34.3 5.9 19 93-111 62-80 (562)
78 1m1j_B Fibrinogen beta chain; 27.4 3.2E+02 0.011 29.0 10.5 19 91-109 117-135 (464)
79 3viq_B Mating-type switching p 27.3 1.1E+02 0.0039 25.4 5.6 48 152-200 4-51 (85)
80 4ghu_A TNF receptor-associated 27.0 75 0.0026 29.2 5.1 31 168-198 5-35 (198)
81 1fxk_C Protein (prefoldin); ar 27.0 92 0.0032 26.6 5.4 43 156-198 1-43 (133)
82 1ytz_I Troponin I; muscle, THI 26.9 2E+02 0.0068 27.0 7.9 72 121-196 24-102 (182)
83 1ykh_A RNA polymerase II media 26.4 87 0.003 27.1 5.0 32 167-198 73-104 (108)
84 2dfs_A Myosin-5A; myosin-V, in 25.2 6.5E+02 0.022 29.2 13.4 20 91-110 956-975 (1080)
85 1ci6_A Transcription factor AT 25.2 1.8E+02 0.0062 22.3 6.2 36 158-193 25-60 (63)
86 2w6a_A ARF GTPase-activating p 24.7 2.3E+02 0.008 22.2 6.6 46 158-203 15-60 (63)
87 1ic2_A Tropomyosin alpha chain 24.3 2.7E+02 0.0092 22.1 8.0 33 164-196 21-53 (81)
88 1a93_B MAX protein, coiled coi 24.3 71 0.0024 22.5 3.3 23 186-208 9-31 (34)
89 2jee_A YIIU; FTSZ, septum, coi 23.9 3E+02 0.01 22.6 8.2 18 176-193 47-64 (81)
90 3mq7_A Bone marrow stromal ant 23.6 3E+02 0.01 24.2 7.8 102 110-211 8-112 (121)
91 2yy0_A C-MYC-binding protein; 23.5 1.1E+02 0.0039 23.0 4.6 27 152-178 22-48 (53)
92 3trt_A Vimentin; cytoskeleton, 23.2 2.6E+02 0.009 21.6 8.4 39 167-205 32-70 (77)
93 3tnu_A Keratin, type I cytoske 23.1 3.5E+02 0.012 23.3 8.4 62 131-203 38-110 (131)
94 3a2a_A Voltage-gated hydrogen 23.1 1.7E+02 0.0058 22.7 5.5 26 170-195 25-50 (58)
95 1deq_A Fibrinogen (alpha chain 22.5 2.9E+02 0.0098 28.8 8.8 95 91-196 63-160 (390)
96 1m1j_C Fibrinogen gamma chain; 22.4 2.5E+02 0.0085 29.2 8.5 39 167-205 95-133 (409)
97 1uii_A Geminin; human, DNA rep 21.9 2.1E+02 0.0071 23.7 6.2 25 173-197 49-73 (83)
98 2k48_A Nucleoprotein; viral pr 21.9 1.1E+02 0.0037 26.5 4.6 29 171-199 36-64 (107)
99 1ytz_T Troponin T; muscle, THI 21.2 3.6E+02 0.012 23.1 7.9 62 135-196 24-89 (107)
100 1fxk_A Prefoldin; archaeal pro 21.2 1.5E+02 0.0051 24.0 5.4 37 159-195 68-104 (107)
101 3i00_A HIP-I, huntingtin-inter 21.0 4.1E+02 0.014 23.0 10.1 40 158-197 35-81 (120)
102 3hho_A CO-chaperone protein HS 20.8 4.6E+02 0.016 23.5 10.5 16 98-113 21-36 (174)
103 4ani_A Protein GRPE; chaperone 20.5 4.5E+02 0.015 25.0 9.2 15 239-253 107-121 (213)
104 1fxk_C Protein (prefoldin); ar 20.5 2.1E+02 0.0073 24.2 6.5 44 156-199 88-131 (133)
105 1kd8_B GABH BLL, GCN4 acid bas 20.3 2.2E+02 0.0075 20.2 5.1 31 167-197 5-35 (36)
106 2zxx_A Geminin; coiled-coil, c 20.2 2.6E+02 0.0089 22.9 6.4 21 172-192 36-56 (79)
107 1kd8_A GABH AIV, GCN4 acid bas 20.2 1.9E+02 0.0065 20.5 4.8 32 166-197 4-35 (36)
108 2jee_A YIIU; FTSZ, septum, coi 20.1 1.6E+02 0.0055 24.2 5.2 30 173-202 9-38 (81)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.87 E-value=0.038 Score=45.02 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038418 165 LKTYEIMGKKLESQLKLKDSEIIFLKEKLEESN 197 (487)
Q Consensus 165 l~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~ 197 (487)
|+..+..++.||.++..||++|..|+.+|+...
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677789999999999999999999997653
No 2
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=94.71 E-value=0.032 Score=44.82 Aligned_cols=45 Identities=31% Similarity=0.295 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
+....++++..++..+..+..||.+++.||.||..||.+|+...+
T Consensus 9 ~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 9 TSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678889999999999999999999999999999999987755
No 3
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=82.37 E-value=1.5 Score=31.23 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Q 038418 173 KKLESQLKLKDSEIIFLKEKLEESN 197 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~Lk~kL~e~~ 197 (487)
+||..++.+||.||..||++=.++.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6889999999999999999876653
No 4
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=78.45 E-value=16 Score=33.46 Aligned_cols=21 Identities=33% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHH
Q 038418 81 EYRISLEAFLAKLFASISTVK 101 (487)
Q Consensus 81 ~~~~~~eali~~lFa~VSslK 101 (487)
..+...|.=...||..+|+..
T Consensus 35 ~~Rd~~E~~~~~l~~e~~~~~ 55 (152)
T 3a7p_A 35 TDRNDKEAHLNELFQDNSGAI 55 (152)
T ss_dssp ---------------------
T ss_pred HHhhhHHHHHHHHHHhhccCC
Confidence 344455666777888877443
No 5
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.97 E-value=28 Score=31.03 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
|..++++...-+-.|---+..++-+++.-..++..|++++.++..++.+||..+
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333233222333333333334444444444444455555554443
No 6
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.16 E-value=6.2 Score=32.05 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 166 KTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 166 ~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
+.++.++++-..|+++||.-|..|...|++.....+.|-..+..
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445558888899999999999999999888888777665543
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.98 E-value=79 Score=32.88 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=32.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
+++.+..++..+.-..++|.+++.+...+.+|++++....+..+.|+++++.
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333344444445566667777777777777777777777777777777654
No 8
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=75.78 E-value=13 Score=38.88 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 153 MVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 153 ~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
.|..+|.+++.++...+..++.||..+..-++.|..|++++.++..
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4667788888888888888899999888888888888888866643
No 9
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=75.60 E-value=9.7 Score=34.93 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 153 MVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 153 ~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
.....|..+++-+...+.-++.|+.+++.|..-+..|+.++..++.++..+|.|+.
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~ 120 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLS 120 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777778888888888888888888888888888777777777654
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.97 E-value=30 Score=36.09 Aligned_cols=67 Identities=10% Similarity=-0.036 Sum_probs=35.6
Q ss_pred hhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 132 LLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 132 ~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
.+-+.++.|....-+.......+..+++..+...+..+...++++.++.++..+...|+++.+++.+
T Consensus 485 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 485 EIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 3444444444322222223355666666666666666666666666665555555555555544443
No 11
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=74.97 E-value=15 Score=29.77 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
+.+..-+.-+|+-++..|-.+.+|+..+..|--..+.|..+|=.++-.|--|.+|+.
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 334444444444444444444444444444433334444444444445555555543
No 12
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=73.25 E-value=9.9 Score=30.94 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=44.5
Q ss_pred chhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHh
Q 038418 149 PEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALE 204 (487)
Q Consensus 149 ~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Le 204 (487)
.....++++|.++...+.--|.++..|...+-...-+|+.|+.+|..+..+-+.++
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34466899999999999888999999999999999999999999976655544443
No 13
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=72.55 E-value=14 Score=31.81 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=40.1
Q ss_pred HHHHHHH--HHHhhhHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 154 VSAEIQE--LKSLLKTYEI--MGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 154 l~aei~e--~q~ll~tye~--~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
|..++++ +++..+.-+. .+..|+.+|..|+.|+..|+..|+.....+..+..++
T Consensus 34 L~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 34 LEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 3444443333 3689999999999999999999999999888887775
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.86 E-value=14 Score=32.98 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 156 AEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 156 aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
.++++++..+..++.-+..|.-++-..+.++..++++++++...+..|++++.
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666677777777777777777777777777777776654
No 15
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=68.22 E-value=12 Score=30.42 Aligned_cols=28 Identities=32% Similarity=0.241 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 038418 167 TYEIMGKKLESQLKLKDSEIIFLKEKLE 194 (487)
Q Consensus 167 tye~~~~kLe~e~~~KDsei~~Lk~kL~ 194 (487)
+...++..|+.+++.||.||..|++-+.
T Consensus 15 ~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 15 ALLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455889999999999999999999875
No 16
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=66.67 E-value=5.8 Score=37.36 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=39.5
Q ss_pred CceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEecc
Q 038418 406 EASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLSP 482 (487)
Q Consensus 406 ~a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls~ 482 (487)
++..+.. .|..|||.+.|-|...... +..+..|.-.+-+|++++++||+ ++|-++.
T Consensus 138 Gv~~i~~-~G~~FDP~~HeAv~~~~~~--------------------~~~~~tVv~v~qkGY~l~dRvLRpA~V~V~~ 194 (197)
T 1dkg_A 138 GVEVIAE-TNVPLDPNVHQAIAMVESD--------------------DVAPGNVLGIMQKGYTLNGRTIRAAMVTVAK 194 (197)
T ss_dssp TEEEECC-CSSBCCTTSEEEEEEEECS--------------------SSCTTBEEEEEECEEEETTEEEECEEEEEEE
T ss_pred CCEEeCC-CCCCCCHHHhheeeeecCC--------------------CCCcCeEEEEeeCCeeeCCEEecceEEEecC
Confidence 3444543 5999999999988643210 11345688899999999999998 4776654
No 17
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=66.04 E-value=6.9 Score=33.78 Aligned_cols=81 Identities=23% Similarity=0.203 Sum_probs=59.1
Q ss_pred HhhHHHHHHHhhc-----CCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 131 KLLSELKQCYLKK-----QFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 131 ~~Ls~LK~~y~~~-----~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
.+|+++...|++- ++|. ..+.+.=+|+-++..|..-|...-.|+.+.+.|-.++..+|.....+...-..|..
T Consensus 2 dsL~EvEEKyrKAMVsnAQLDN--EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 2 DSLAEVEEKYKKAMVSNAQLDN--EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp ------CCTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777788862 2222 23557777888888888888888999999999999999999999999888888877
Q ss_pred hhhccCCC
Q 038418 206 RMNQSGQL 213 (487)
Q Consensus 206 rl~~s~~l 213 (487)
.|.++-.+
T Consensus 80 ~L~qRD~L 87 (103)
T 4h22_A 80 ALKQREEM 87 (103)
T ss_dssp HHHTTTSC
T ss_pred HHHHHHHH
Confidence 77776543
No 18
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=65.43 E-value=13 Score=37.64 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
+.|..||..++.++...+..++.|+.++..-++.|..|+++|.++..
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778888888899899999999999999888888888888876654
No 19
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=64.99 E-value=12 Score=38.13 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=30.8
Q ss_pred HHHHHHH-hhHHHHHHHhhcCCCCCch-h------hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 038418 125 LVVSELK-LLSELKQCYLKKQFDFSPE-K------TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLK 190 (487)
Q Consensus 125 ~vVsEL~-~Ls~LK~~y~~~~~~~~~~-~------~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk 190 (487)
-++.+|+ .|.+++..|..-+...+.. . ..|+++.-.++..++..|..+.+|+.+++.-.+||.+||
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455565 6777776665321111100 0 224444444444554455555555555555555554444
No 20
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=64.76 E-value=31 Score=32.39 Aligned_cols=73 Identities=19% Similarity=0.107 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHH-------HhhhhHHHHHHHHHHH
Q 038418 122 ADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQ-------LKLKDSEIIFLKEKLE 194 (487)
Q Consensus 122 AD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e-------~~~KDsei~~Lk~kL~ 194 (487)
|=+.+-.|-+...+=|+.|......| ...+.| -.+++|.+.+.|+..+.+|+.| +...|-||..|+.++.
T Consensus 27 A~e~L~~E~e~k~eEKkkiLaER~kP-Lnid~L--se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~ 103 (180)
T 1j1e_C 27 AKQELEREAEERRGEKGRALSTRAQP-LELAGL--GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCC-CCGGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCCC--CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 44445567778888899998643322 222221 2345666777777777666554 6777899999999998
Q ss_pred HHH
Q 038418 195 ESN 197 (487)
Q Consensus 195 e~~ 197 (487)
++.
T Consensus 104 DLr 106 (180)
T 1j1e_C 104 DLR 106 (180)
T ss_dssp HHC
T ss_pred HHH
Confidence 884
No 21
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=63.78 E-value=23 Score=37.03 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=45.2
Q ss_pred HHHHHHhhcCCCCCc------hh-hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 135 ELKQCYLKKQFDFSP------EK-TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 135 ~LK~~y~~~~~~~~~------~~-~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
.||..|...+....+ +. ..|..|+...+.++...+..+..||+.+...++.|..|++++.++..
T Consensus 63 ~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 63 AIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666654433321 11 23777777778888888888899999999999999888888865543
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.85 E-value=41 Score=29.04 Aligned_cols=54 Identities=13% Similarity=0.297 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLK---DSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~K---Dsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
+.+..++...|..+..|- .|.|.|+..| +++|..||+.++++.-....||.++.
T Consensus 37 a~l~leldn~~~~~edfk---~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~ie 93 (119)
T 3ol1_A 37 ARVEVERDNLAEDIMRLR---EKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVE 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 345555555554443332 2333344333 33666666666666666666666543
No 23
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=61.25 E-value=9.9 Score=35.29 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=38.8
Q ss_pred ceEEEecCCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEeccC
Q 038418 407 ASIFQVNKGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYLSPA 483 (487)
Q Consensus 407 a~IF~V~rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYls~~ 483 (487)
+..+-. .|..|||.+.|-|..... .+..|.-.+-+|++++++||+ ++|-++..
T Consensus 116 v~~i~~-~Ge~FDP~~HeAv~~~~~-----------------------~~gtVv~v~qkGY~l~dRvLRpA~V~V~~~ 169 (177)
T 3a6m_A 116 VEEVPG-EGEAFDPRYHEAVGLLPG-----------------------EPGKVAKVFQRGFRMGEALVRPARVAVGEE 169 (177)
T ss_dssp CEECCC-TTSBCCTTTEEEEEEEES-----------------------STTBEEEEEECCEEETTEEEECEEEEEEEC
T ss_pred CEEeCC-CCCCCCHHHhhhhhcccC-----------------------CcCeEEEEeecCeeeCCEEecCeEEEEeCC
Confidence 344443 599999999998854210 234688899999999999998 57777643
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.91 E-value=14 Score=39.86 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHH-----------------HHHHHHHHHHHHHhhHhHhhhhhccC---CCcC
Q 038418 156 AEIQELKSLLKTYEIMGKKLESQLKLKDSE-----------------IIFLKEKLEESNKQNKALEKRMNQSG---QLVM 215 (487)
Q Consensus 156 aei~e~q~ll~tye~~~~kLe~e~~~KDse-----------------i~~Lk~kL~e~~~~n~~Lekrl~~s~---~ls~ 215 (487)
..|+.||+.|+.--.-++|||..|..|=.. -+.+.++|+++.+.| |.++. .|..
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~d------L~p~~~~q~Lp~ 204 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKD------LLPSRDRQHLPL 204 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTC------CCCSCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcc------cCCccccccchh
Confidence 556666666666666677777777655321 245666666666655 22222 2333
Q ss_pred CcccccCCCChhHHHHHHHHHHHHHHHH
Q 038418 216 PDNVHLSGLSPSHFNTVLRHTVKSIRSF 243 (487)
Q Consensus 216 ~d~l~~s~lsp~~F~~~l~~A~~Sir~F 243 (487)
++-..+..+.|.+|-..+..+----+.|
T Consensus 205 lKmrP~kD~Vp~~fKsq~q~~~~e~kal 232 (562)
T 3ghg_A 205 IKMKPVPDLVPGNFKSQLQKVPPEWKAL 232 (562)
T ss_dssp ----------------------------
T ss_pred cccccccccCchhhhhhccccCHHHHHh
Confidence 3333444578888887777665554555
No 25
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=59.77 E-value=82 Score=26.85 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=56.6
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 126 VVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 126 vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
.-.+|..|...+..|...-....+ ...-.+++...+.-+...+..+...+.++..-..++...++.|-++...-+.+|+
T Consensus 38 ~~~~L~~L~~~~~~y~~~~~~~~~-~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~ 116 (150)
T 3ajw_A 38 AEEQLKMLIDYQNEYRSNLNTDMG-NGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQT 116 (150)
T ss_dssp HHHHHHHHHHHHHHHHHTCC--CC-SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888864222211 1223556777788888888888888888888888888888888888777777653
No 26
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=59.73 E-value=23 Score=29.14 Aligned_cols=56 Identities=14% Similarity=0.294 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 151 KTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDS---EIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 151 ~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDs---ei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
.+.+..++...|..+..| -.|.|.|+..|.+ +|..||+-++++.-....||.++.+
T Consensus 16 ~~~l~~e~dn~~~~~edf---k~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kves 74 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRL---REKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVES 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 356777777766665444 3567777776654 8889999999988888888887653
No 27
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=56.69 E-value=1.1e+02 Score=27.54 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=52.7
Q ss_pred hhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 150 EKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 150 ~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
+..+|++|+.+.+.++++.+....-.+.++.........-|++++.+..-.+.|...+..
T Consensus 87 Yn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 87 YNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346799999999999999999999999999999999999999999999988888887654
No 28
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=53.88 E-value=24 Score=30.99 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=38.6
Q ss_pred hcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhcCCCCCch-hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Q 038418 110 AQSPYDADGIQSADQLVVSELKLLSELKQCYLKKQFDFSPE-KTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIF 188 (487)
Q Consensus 110 Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~-~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~ 188 (487)
-|+|+++|= +--||++|....+.-.+..-+.--+ .+..+-| .-.+-+.|+..+++++++.-.|-.+++.
T Consensus 28 ~~~~~~sDP-------L~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E---~ae~k~KYD~~lqe~ese~~~kkK~le~ 97 (115)
T 3vem_A 28 IPFPVFNDP-------FLHELEKLRRESENSKKTFEEKKSILKAELERK---MAEVQAEFRRKFHEVEAEHNTRTTKIEK 97 (115)
T ss_dssp -----CCSH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888876 4569999988876665531111001 1222333 3334556777777777777666666655
Q ss_pred HHHH
Q 038418 189 LKEK 192 (487)
Q Consensus 189 Lk~k 192 (487)
++.+
T Consensus 98 ~~~k 101 (115)
T 3vem_A 98 DKNL 101 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=53.27 E-value=54 Score=27.52 Aligned_cols=55 Identities=16% Similarity=0.354 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
.+.+|..++..+...|.-+.+++.++..--..+..-.+...++...+..|.+||.
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777776666666666666665555555555566666667777777764
No 30
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=52.85 E-value=48 Score=28.87 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038418 183 DSEIIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTVLRHTVKSIRSFVRLMIDEL 251 (487)
Q Consensus 183 Dsei~~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~~A~~Sir~F~KlLi~~M 251 (487)
|.-+++|-.+|..+...|+.|-++++++|+.+..|. .+||..=...+-.+ +..|++.-...+
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~----~LTp~qKea~I~s~---~~~Lss~A~~KI 68 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDS----ILTAAKRESIIVSS---SRALGAVAMRKI 68 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC---------CC----BCCHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc----cCCHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344567778888889999999999988766544443 37887655555543 355555544444
No 31
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=51.43 E-value=60 Score=27.04 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
...+|..++..+...+.-+.+.+..+..-...+..-.+...++.+.+..|.+||.
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777776666666666666665555666666667777777778877764
No 32
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=49.71 E-value=1.2e+02 Score=32.20 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 155 SAEIQELKSLLKTYEIMGKKLESQLKLK-----DSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 155 ~aei~e~q~ll~tye~~~~kLe~e~~~K-----Dsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
+.+++++...++.|...+++.+..++.. .+.|..|+..|+.+..+...||..+.
T Consensus 134 Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 134 QKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777666533 35677777777777777677766554
No 33
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=48.58 E-value=6.8 Score=37.59 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=34.4
Q ss_pred CCCcccccccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCeeeCCeEEE-eEEEe
Q 038418 414 KGSRFSEVYMESVAEEAFLSSSENPQESSSLSPSLSSSSDSAEPRVAFTIVPGFRIGKTVLQ-CQVYL 480 (487)
Q Consensus 414 rG~~Fs~vYMEsV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYl 480 (487)
.|..|||.+.|-|..... ++..+..|.-.+-+|++++++||+ ++|-+
T Consensus 164 ~Ge~FDP~~HeAv~~v~~--------------------~~~~~gtVv~V~qkGY~l~dRVLRpA~V~V 211 (213)
T 4ani_A 164 VGKPFDPYLHQAVMQAEA--------------------EGYEPNTVVEELQKGYKLKDRVLRPAMVKV 211 (213)
T ss_dssp SSSCCCTTTEEEEEEECC--------------------SSSCSSSEEEEEECCCEETTSCCSCEEEEE
T ss_pred CCCCCCHHHceeeeeecC--------------------CCCCCCcEEEEEeCCeEECCEEeeceEEEe
Confidence 499999999999864321 112345688899999999999986 45544
No 34
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=48.37 E-value=50 Score=24.90 Aligned_cols=22 Identities=32% Similarity=0.301 Sum_probs=14.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q 038418 173 KKLESQLKLKDSEIIFLKEKLE 194 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~Lk~kL~ 194 (487)
..||..-..++-||.+|++=|.
T Consensus 21 ~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 21 QHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHH
Confidence 3455556666778888877664
No 35
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=47.92 E-value=19 Score=34.11 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=23.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhH
Q 038418 173 KKLESQLKLKDSEIIFLKEKLEESNKQNK 201 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~Lk~kL~e~~~~n~ 201 (487)
..|..+++.|+.||..|+++|+.+...-+
T Consensus 30 ~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 30 FVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45555889999999999999987766543
No 36
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=46.53 E-value=33 Score=28.14 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=45.8
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038418 124 QLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKE 191 (487)
Q Consensus 124 ~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~ 191 (487)
.-+..|+.++...=+-|+.+==+-......+++++..++..+...-..--.||+++..=..||.+||+
T Consensus 17 ~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 17 ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567888776654455432111112346688999999999987777777888888877777777764
No 37
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.85 E-value=20 Score=32.32 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhhHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHH
Q 038418 154 VSAEIQELKSLLKTYEI---MGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFN 230 (487)
Q Consensus 154 l~aei~e~q~ll~tye~---~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~ 230 (487)
...+|..++..++.||. -.+.|+.++...|.|+..|..+|.+........|+....-. .-+-.||.++|.
T Consensus 13 ~r~~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie-------~ElE~LTasLFe 85 (135)
T 2e7s_A 13 SLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN-------KEVEDLTASLFD 85 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 44556666666777766 35667778888999999999999988777776666543311 122247889998
Q ss_pred HHHHH
Q 038418 231 TVLRH 235 (487)
Q Consensus 231 ~~l~~ 235 (487)
.+=.-
T Consensus 86 EAN~M 90 (135)
T 2e7s_A 86 EANNL 90 (135)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76443
No 38
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=44.82 E-value=20 Score=28.68 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhcc
Q 038418 170 IMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQS 210 (487)
Q Consensus 170 ~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s 210 (487)
.++++|.+.++.||.-|.+|...|++-......|...|+.-
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999988888888776653
No 39
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=44.52 E-value=1.1e+02 Score=25.14 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=6.8
Q ss_pred HHHHHHhhHHHHHHH
Q 038418 126 VVSELKLLSELKQCY 140 (487)
Q Consensus 126 vVsEL~~Ls~LK~~y 140 (487)
+.+++..|...-+.+
T Consensus 29 l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 29 LKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344555444444444
No 40
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=43.91 E-value=51 Score=38.33 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
+..++++++.-+...+....+|+.+++.-+.++..|+++++++
T Consensus 925 Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleel 967 (1184)
T 1i84_S 925 LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333334444444444444444444444443
No 41
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.82 E-value=1.1e+02 Score=31.18 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=49.6
Q ss_pred HHhhHHHHHHHhhcCCCCCc-hhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhh
Q 038418 130 LKLLSELKQCYLKKQFDFSP-EKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 130 L~~Ls~LK~~y~~~~~~~~~-~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
-+...++.+.+.......-- ..+.....+......++.||.+.+++|.+......+....+++.+.+...|.++++-+.
T Consensus 380 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 380 RRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhh
Confidence 34555666666553332221 12223344555667778888888888888877777777777777777777777766543
No 42
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.54 E-value=60 Score=29.71 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHH---HHHHHHH
Q 038418 172 GKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTV---LRHTVKS 239 (487)
Q Consensus 172 ~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~---l~~A~~S 239 (487)
..+|+.+....|.|+..|..+|.+........|+....-. .-+-.||.++|..+ +..|++.
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie-------~ElEeLTasLFeEAN~MVa~ar~~ 109 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN-------KEVEDLTASLFDEANNMVADARKE 109 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999999999999888777777766543311 12224788999875 4444444
No 43
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=43.50 E-value=36 Score=27.46 Aligned_cols=34 Identities=38% Similarity=0.471 Sum_probs=18.2
Q ss_pred HHHHHHHhhhhHHHHHH-------HHHHHHHHHhhHhHhhh
Q 038418 173 KKLESQLKLKDSEIIFL-------KEKLEESNKQNKALEKR 206 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~L-------k~kL~e~~~~n~~Lekr 206 (487)
++|...++.|+.||.+| |.||..-+--|++||..
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~ 46 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQ 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666554 34444444455555554
No 44
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=43.45 E-value=13 Score=27.37 Aligned_cols=19 Identities=37% Similarity=0.676 Sum_probs=14.6
Q ss_pred HHHHhcCCCHHHHhhhcCC
Q 038418 249 DELKSAGWDIDAAANSIQP 267 (487)
Q Consensus 249 ~~Mk~agwDl~aaa~si~p 267 (487)
..+++++|||..|++..-|
T Consensus 26 ~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 26 TLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHTTTCHHHHHTTC--
T ss_pred HHHHHcCCcHHHHHHHHcC
Confidence 4678999999999987644
No 45
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=41.89 E-value=53 Score=27.19 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHHH
Q 038418 165 LKTYEIMGKKLESQ 178 (487)
Q Consensus 165 l~tye~~~~kLe~e 178 (487)
|+.+|..-+.|+.+
T Consensus 47 L~eae~rn~eL~~e 60 (81)
T 1wt6_A 47 LREAEARNRDLEAH 60 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444333
No 46
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=41.89 E-value=44 Score=27.79 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Q 038418 173 KKLESQLKLKDSEIIFLKEKLEESN 197 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~Lk~kL~e~~ 197 (487)
++|..++..||.||..||+++.++.
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999887663
No 47
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.56 E-value=1.1e+02 Score=26.24 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038418 151 KTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEE 195 (487)
Q Consensus 151 ~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e 195 (487)
...++++|..++..+..--..--.||.+++.=..||.+||+--++
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~hee 108 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788899988888665555667888888888888888765443
No 48
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.74 E-value=2.6e+02 Score=26.48 Aligned_cols=102 Identities=16% Similarity=0.057 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHH---HHHHHhhHHHHHHHhhc--CCCCCchhhhHHHHHHHH
Q 038418 87 EAFLAKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLV---VSELKLLSELKQCYLKK--QFDFSPEKTMVSAEIQEL 161 (487)
Q Consensus 87 eali~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~v---VsEL~~Ls~LK~~y~~~--~~~~~~~~~~l~aei~e~ 161 (487)
.+-|..|=+.+..++..+..++.. |...+.-+ =.++..+...-..|..+ ....+-.-..|..||.-+
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~--------l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~ 102 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEE--------KLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIA 102 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 344555666666666666666643 33333332 24555555555555543 222223334566666666
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 162 KSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 162 q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
...+...|..+..+..++..+..++..++..++++
T Consensus 103 ~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~ 137 (256)
T 3na7_A 103 KERSNQANREIENLQNEIKRKSEKQEDLKKEMLEL 137 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554444444443
No 49
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=38.50 E-value=38 Score=29.17 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=27.3
Q ss_pred HHHHHhhhHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHH
Q 038418 159 QELKSLLKTYEIMGKKLES-------QLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 159 ~e~q~ll~tye~~~~kLe~-------e~~~KDsei~~Lk~kL~e~ 196 (487)
+++|.+.+.|+..+.+||+ .+..+|-||..|+.+..++
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455566666666665554 4777889999999998877
No 50
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.00 E-value=89 Score=29.78 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
+-++++.++..+......+.+++.++..-+.+|..+...++++..+-.+.++++..
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555555555555555555555555555556666666666665555666666653
No 51
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=37.96 E-value=1.8e+02 Score=27.35 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhhhHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhh
Q 038418 153 MVSAEIQELKSLLKTY----EIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKR 206 (487)
Q Consensus 153 ~l~aei~e~q~ll~ty----e~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekr 206 (487)
.|..++++.+..+..- ..++..||.++..--.....|+..|.++...|-.||..
T Consensus 67 ~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 67 RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3555555554443332 23367777777777777777777777777777777654
No 52
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.61 E-value=1.1e+02 Score=23.16 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038418 155 SAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESN 197 (487)
Q Consensus 155 ~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~ 197 (487)
+....+++.-+......-.+|..-++.-..+|..|+++|+.+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445566666666777778888899999999999999998763
No 53
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.95 E-value=46 Score=27.33 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 166 KTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 166 ~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
.-.+.++.+|+.|-..=+..|.-|+.+.+|+.+.
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778888888888888888888888887654
No 54
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=36.22 E-value=30 Score=34.99 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 155 SAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 155 ~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
+.||..+...+..++..++.|+..++..+.+|..|++++.++..
T Consensus 3 ~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 3 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp -------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556667777788888887778888888888866644
No 55
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.31 E-value=81 Score=26.85 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHHHH
Q 038418 172 GKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTVLR 234 (487)
Q Consensus 172 ~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~ 234 (487)
+..|++++...|.|+..|+..|.+........|+....-. .-+-.||.++|..+=.
T Consensus 14 l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie-------~ElEeLTasLFeEAN~ 69 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN-------KEVEDLTASLFDEANN 69 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4778888888999999999999988777777776544311 1222478889977533
No 56
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=35.13 E-value=2.6e+02 Score=26.37 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhccCCCcCCcccccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 038418 168 YEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQSGQLVMPDNVHLSGLSPSHFNTVLRHTVKSIRSFVRLM 247 (487)
Q Consensus 168 ye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~s~~ls~~d~l~~s~lsp~~F~~~l~~A~~Sir~F~KlL 247 (487)
++.....|+.+.+....++..|+++|+++......+|.-|- .-|+.+|..=..=||+.-+-|
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~------------------~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLY------------------KRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHhhHHHHHHHHHHH
Confidence 34446778888888899999999999999999999998764 579999999888899999666
Q ss_pred HHHHHh
Q 038418 248 IDELKS 253 (487)
Q Consensus 248 i~~Mk~ 253 (487)
+.+.+.
T Consensus 199 l~~~~~ 204 (213)
T 1ik9_A 199 LNAAQE 204 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 57
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=34.87 E-value=1.7e+02 Score=24.13 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHhhHhHhhhh
Q 038418 183 DSEIIFLKEKLEESNKQNKALEKRM 207 (487)
Q Consensus 183 Dsei~~Lk~kL~e~~~~n~~Lekrl 207 (487)
+++|..||.+|+++...|.+++-.+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776666443
No 58
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.52 E-value=99 Score=26.77 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
.-|...|.++++-+...|-....|.++-+.=..+|..|++.|+++..
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888888888888888889988888888899999999988754
No 59
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=33.38 E-value=1.9e+02 Score=37.76 Aligned_cols=53 Identities=9% Similarity=0.243 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhh
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKR 206 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekr 206 (487)
+.+++.+++.-++.-+..+++.+++++.-+.+|..|+++++++.+....|+..
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666677777777777777778888877777766666544
No 60
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.34 E-value=56 Score=24.70 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhHhHhhhhh
Q 038418 188 FLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 188 ~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
.||.+++++...+..|..|+.
T Consensus 30 eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 30 EMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444443
No 61
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=33.00 E-value=1.1e+02 Score=25.26 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH
Q 038418 172 GKKLESQLKLKDSEIIFLKEKL 193 (487)
Q Consensus 172 ~~kLe~e~~~KDsei~~Lk~kL 193 (487)
+.-|+.++..||+||.+|+.+|
T Consensus 56 l~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 56 VAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3445556666666666665554
No 62
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.88 E-value=35 Score=33.51 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 155 SAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 155 ~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
+..+.+++.-++...+..++|..+++.-..||..||++|+.+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666666667778888777777777777777655
No 63
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.51 E-value=1.6e+02 Score=24.37 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHhh
Q 038418 152 TMVSAEIQELKSLL 165 (487)
Q Consensus 152 ~~l~aei~e~q~ll 165 (487)
+.|.+||+-.|++.
T Consensus 17 SALeaEIqAKQ~i~ 30 (81)
T 1wt6_A 17 EALEEEVLTRQSLS 30 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666555554
No 64
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=31.48 E-value=2e+02 Score=23.48 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=21.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhh
Q 038418 173 KKLESQLKLKDSEIIFLKEKLEESNKQNKALEKR 206 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekr 206 (487)
-.|+.++..=..||..||..+++.......+.+|
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4566666666677777777777766655555443
No 65
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=31.42 E-value=2.6e+02 Score=24.29 Aligned_cols=44 Identities=18% Similarity=0.383 Sum_probs=29.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHhhHhH
Q 038418 157 EIQELKSLLKTYEIMGKKLESQLKLKD---SEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 157 ei~e~q~ll~tye~~~~kLe~e~~~KD---sei~~Lk~kL~e~~~~n~~L 203 (487)
.|+-++.-+..|. ...++|-.+|. +|+..|..+|+.+.++|..|
T Consensus 63 ~I~vLkaQv~IY~---~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 63 TVPVLKAQADIYK---ADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH---HHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 3555555555565 45556655554 58889999999888888654
No 66
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=31.20 E-value=1e+02 Score=35.87 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhhhhc
Q 038418 172 GKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKRMNQ 209 (487)
Q Consensus 172 ~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekrl~~ 209 (487)
.++++.+++..+.|+..|+++++.+.+.++.+|+++.+
T Consensus 979 ~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~ 1016 (1080)
T 2dfs_A 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666666666666666665443
No 67
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=31.05 E-value=2.8e+02 Score=24.63 Aligned_cols=74 Identities=19% Similarity=0.100 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHH-------HHhhhhHHHHHHHHHHH
Q 038418 122 ADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLES-------QLKLKDSEIIFLKEKLE 194 (487)
Q Consensus 122 AD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~-------e~~~KDsei~~Lk~kL~ 194 (487)
|=+.+-.|-+...+=|+.|......+- ..+.+ -.+++|.+.+.|+..+.+||. .+..+|-||..|+.++.
T Consensus 27 A~e~l~kE~e~k~eeKkkiLaER~~pL-~id~l--s~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~ 103 (133)
T 1j1d_C 27 AKQELEREAEERRGEKGRALSTRAQPL-ELAGL--GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCC-CCTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCC--CHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHH
Confidence 444455677788888999986433221 11111 134556667777766665554 57778899999999998
Q ss_pred HHHH
Q 038418 195 ESNK 198 (487)
Q Consensus 195 e~~~ 198 (487)
++..
T Consensus 104 Dl~g 107 (133)
T 1j1d_C 104 DLRG 107 (133)
T ss_dssp HHC-
T ss_pred HHHc
Confidence 8853
No 68
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=30.87 E-value=1.5e+02 Score=25.59 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=17.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhH
Q 038418 179 LKLKDSEIIFLKEKLEESNKQNK 201 (487)
Q Consensus 179 ~~~KDsei~~Lk~kL~e~~~~n~ 201 (487)
+++|.+++..|+.||+++.+.-+
T Consensus 77 l~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 77 LQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888876543
No 69
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.50 E-value=1.1e+02 Score=23.03 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=8.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q 038418 173 KKLESQLKLKDSEIIFLKEKLE 194 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~Lk~kL~ 194 (487)
+.|+.+...=.++|..|+.++.
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444443
No 70
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.86 E-value=98 Score=24.67 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhH
Q 038418 173 KKLESQLKLKDSEIIFLKEKLEESNKQNK 201 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~Lk~kL~e~~~~n~ 201 (487)
..|+.....-..|...|+..+..+...|.
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334555566666665555443
No 71
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.45 E-value=95 Score=32.12 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhhh
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEKR 206 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lekr 206 (487)
..|..|+.+++... ++|+.+++.-..|+..++++|.+.+...++|-..
T Consensus 6 ~~l~~el~~~~~~~-------~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~ 53 (412)
T 3u06_A 6 AALSTEVVHLRQRT-------EELLRCNEQQAAELETCKEQLFQSNMERKELHNT 53 (412)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655555 6777777777777777788877776666666443
No 72
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.38 E-value=1e+02 Score=25.61 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKL 193 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL 193 (487)
+.-+++|.++|..+..-..--.+|+.|++.=..++..+|.+|
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345677777777775555555556655555555555555443
No 73
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.30 E-value=66 Score=25.68 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=14.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKL 193 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL 193 (487)
|.++..-+..++.....|..|...=-.+|..|..+|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333343333444444444444444444444
No 74
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.82 E-value=95 Score=31.90 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 172 GKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 172 ~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
.++|+.++..-..++..|+++|.+.....++|
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 19 IAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555554444444
No 75
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=27.77 E-value=2.6e+02 Score=23.17 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 154 VSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 154 l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
+.++++.+..-=+..-.-+++|+.+-..=|.+|..|+.++..+.......++
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~ 60 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQR 60 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344443333333333345666667677777777777777766665555444
No 76
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=27.72 E-value=1.2e+02 Score=24.99 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=28.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
+..+..-+...+..+++|+.++.....++..|+.+|.+...
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444455556777788888887777788888877766543
No 77
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.45 E-value=78 Score=34.28 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=14.4
Q ss_pred HHHHHhhHHHHHHHHHhhc
Q 038418 93 LFASISTVKSSYVQLQHAQ 111 (487)
Q Consensus 93 lFa~VSslKaAY~qLQ~Ah 111 (487)
|=..|--||..|-+||+.+
T Consensus 62 ltkrINELKnqLEdlsKns 80 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNN 80 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4456677899999998766
No 78
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.45 E-value=3.2e+02 Score=28.99 Aligned_cols=19 Identities=11% Similarity=0.377 Sum_probs=11.6
Q ss_pred HHHHHHHhhHHHHHHHHHh
Q 038418 91 AKLFASISTVKSSYVQLQH 109 (487)
Q Consensus 91 ~~lFa~VSslKaAY~qLQ~ 109 (487)
...|.-|-.|+..|.+.|.
T Consensus 117 s~~~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 117 TTMYQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccc
Confidence 3445555567777777765
No 79
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=27.25 E-value=1.1e+02 Score=25.39 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQN 200 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n 200 (487)
+.|.++|.+++.-.+..+..+..+++++...|.+- .+++.++-++.-|
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~-~~~~hI~~Lh~YN 51 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQ-TVQKHIDLLHTYN 51 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH-HHHHHHHHHHHHh
Confidence 44666666666666666666666666665554331 2344444444433
No 80
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=27.04 E-value=75 Score=29.23 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 168 YEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 168 ye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
.|..+++|+.++..+|.+|..|++++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 5 LESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556789999999999999999888876654
No 81
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.04 E-value=92 Score=26.55 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 156 AEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 156 aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
|+++.++..+..|+.++..|+.++..=...|..+++-++.+..
T Consensus 1 ~~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 1 AALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577788888888888888888877777777777766666644
No 82
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=26.94 E-value=2e+02 Score=27.00 Aligned_cols=72 Identities=22% Similarity=0.134 Sum_probs=44.0
Q ss_pred HhHHHHHHHHHhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHH-------HhhhhHHHHHHHHHH
Q 038418 121 SADQLVVSELKLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQ-------LKLKDSEIIFLKEKL 193 (487)
Q Consensus 121 aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e-------~~~KDsei~~Lk~kL 193 (487)
-|=+.+-.|-+...+-|+.|......|- ..+. -.+++|.+.+.|+..+..|+.| +...|-||..|+.++
T Consensus 24 kA~e~L~~E~e~k~eeKkkiLaER~kPL-nid~---se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV 99 (182)
T 1ytz_I 24 LAVTEIEKEAAAKEVEKQNYLAEHSPPL-SLPG---SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKL 99 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCC-CCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCC---CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHH
Confidence 3444556677788888999986322111 1111 1345666777777776666555 666777777777766
Q ss_pred HHH
Q 038418 194 EES 196 (487)
Q Consensus 194 ~e~ 196 (487)
.++
T Consensus 100 nDL 102 (182)
T 1ytz_I 100 FDL 102 (182)
T ss_dssp GGG
T ss_pred HHH
Confidence 555
No 83
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=26.44 E-value=87 Score=27.07 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038418 167 TYEIMGKKLESQLKLKDSEIIFLKEKLEESNK 198 (487)
Q Consensus 167 tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~ 198 (487)
.+|.+..-||.|++.|-.+|..+++..+++..
T Consensus 73 ARetL~~~le~Qi~~kr~e~~~i~~~~~~~~~ 104 (108)
T 1ykh_A 73 SRESLIMLLEEQLEYKRGEIREIEQVCKQVHD 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999888754
No 84
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.22 E-value=6.5e+02 Score=29.18 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=11.0
Q ss_pred HHHHHHHhhHHHHHHHHHhh
Q 038418 91 AKLFASISTVKSSYVQLQHA 110 (487)
Q Consensus 91 ~~lFa~VSslKaAY~qLQ~A 110 (487)
.++-+.++.||..-.+|+..
T Consensus 956 ~~~~~e~~~L~~~l~~le~~ 975 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMS 975 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566666555555553
No 85
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=25.21 E-value=1.8e+02 Score=22.28 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=17.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKL 193 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL 193 (487)
+++++.-++..+..-..|+.++..=..|+..||.-|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555455555555544
No 86
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.70 E-value=2.3e+02 Score=22.23 Aligned_cols=46 Identities=24% Similarity=0.182 Sum_probs=29.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhH
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKAL 203 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~L 203 (487)
-=|.+..+.+-|+-++.|=.--..--.|+..|..+|..+.+.|..|
T Consensus 15 ylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 15 YLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 3345555556666665555444445557777888888888888766
No 87
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.32 E-value=2.7e+02 Score=22.11 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 164 LLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 164 ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
-+...+.-++..+......+.+|..|.+++..+
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l 53 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGT 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555444
No 88
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.32 E-value=71 Score=22.46 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhHhHhhhhh
Q 038418 186 IIFLKEKLEESNKQNKALEKRMN 208 (487)
Q Consensus 186 i~~Lk~kL~e~~~~n~~Lekrl~ 208 (487)
+....+.++++.++|..|+..+.
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 44567777888888888887654
No 89
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.86 E-value=3e+02 Score=22.59 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=7.5
Q ss_pred HHHHhhhhHHHHHHHHHH
Q 038418 176 ESQLKLKDSEIIFLKEKL 193 (487)
Q Consensus 176 e~e~~~KDsei~~Lk~kL 193 (487)
.++....+.|+..|+++.
T Consensus 47 ~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 47 QHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 333333444444444444
No 90
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.56 E-value=3e+02 Score=24.25 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred hcCCCCchhHhHhHHH--HHHHHH-hhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHH
Q 038418 110 AQSPYDADGIQSADQL--VVSELK-LLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEI 186 (487)
Q Consensus 110 Ah~PyDpdkI~aAD~~--vVsEL~-~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei 186 (487)
||++=--|++++=++. +...|+ .|..=++.+++++.........+..=..-+...-.--...+++|+.||..=.-++
T Consensus 8 ANSeAC~dGLrAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~L 87 (121)
T 3mq7_A 8 ANSEAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKL 87 (121)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHhHhhhhhccC
Q 038418 187 IFLKEKLEESNKQNKALEKRMNQSG 211 (487)
Q Consensus 187 ~~Lk~kL~e~~~~n~~Lekrl~~s~ 211 (487)
..+-.+++++.+.|..|.-|+...+
T Consensus 88 q~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 88 QDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhchhhhhHhhhcc
No 91
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.53 E-value=1.1e+02 Score=22.97 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 038418 152 TMVSAEIQELKSLLKTYEIMGKKLESQ 178 (487)
Q Consensus 152 ~~l~aei~e~q~ll~tye~~~~kLe~e 178 (487)
..|..|.+++|..+........+|+++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666555554444444444443
No 92
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=23.22 E-value=2.6e+02 Score=21.61 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 167 TYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 167 tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
.|..-+..|+.++.....++...|.+|.++.+.-..|+-
T Consensus 32 ~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 32 WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666555565666666665554444443
No 93
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.13 E-value=3.5e+02 Score=23.27 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred HhhHHHHHHHhhcCCCCCchhhhHHHHHHHHHHhhhHHHHHH-----------HHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 131 KLLSELKQCYLKKQFDFSPEKTMVSAEIQELKSLLKTYEIMG-----------KKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 131 ~~Ls~LK~~y~~~~~~~~~~~~~l~aei~e~q~ll~tye~~~-----------~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
..+++|++..-+ |.++|+.+++.-...|..+ +.++..+...+.++..+|..+....+.
T Consensus 38 ~Ei~elrr~iq~-----------L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 38 SEISELRRTMQN-----------LEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp ---CHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHhH
Q 038418 200 NKAL 203 (487)
Q Consensus 200 n~~L 203 (487)
-..|
T Consensus 107 Yq~L 110 (131)
T 3tnu_A 107 YKIL 110 (131)
T ss_dssp HHHH
T ss_pred HHHH
No 94
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=23.12 E-value=1.7e+02 Score=22.68 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038418 170 IMGKKLESQLKLKDSEIIFLKEKLEE 195 (487)
Q Consensus 170 ~~~~kLe~e~~~KDsei~~Lk~kL~e 195 (487)
.-++.||-+-..||-||.+|++-|.+
T Consensus 25 ~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 25 AKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888999999999999887754
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.55 E-value=2.9e+02 Score=28.78 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=56.5
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCCCCchhHhHhHHHHHHHHHhhHHHHHHHhhc-CCCCC--chhhhHHHHHHHHHHhhhH
Q 038418 91 AKLFASISTVKSSYVQLQHAQSPYDADGIQSADQLVVSELKLLSELKQCYLKK-QFDFS--PEKTMVSAEIQELKSLLKT 167 (487)
Q Consensus 91 ~~lFa~VSslKaAY~qLQ~Ah~PyDpdkI~aAD~~vVsEL~~Ls~LK~~y~~~-~~~~~--~~~~~l~aei~e~q~ll~t 167 (487)
-.+=..|.-|+..-..||+.|. ..+..+. ++..+ ||..+... +-+.. -..+.|+.+|..+|..++.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~--------~~~~y~~-~~~~~--lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~ 131 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSK--------DSNTLTK-NIVEL--MRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIE 131 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhh--------HHHHHHH-HHHHH--HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888875 2222222 22221 23333321 11111 1235577777777777766
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 168 YEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 168 ye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
-=.-++-||.-|+.--++|.+|...++-+
T Consensus 132 q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 132 QVQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888888888777777544
No 96
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.38 E-value=2.5e+02 Score=29.20 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHhHhh
Q 038418 167 TYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQNKALEK 205 (487)
Q Consensus 167 tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~Lek 205 (487)
.||.++..-+++++.-...+..++.+|+++...-..|+.
T Consensus 95 ~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 95 RYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433334433
No 97
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.91 E-value=2.1e+02 Score=23.75 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Q 038418 173 KKLESQLKLKDSEIIFLKEKLEESN 197 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~Lk~kL~e~~ 197 (487)
++|..++..++.||..||+.++++.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888889999999999888774
No 98
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.90 E-value=1.1e+02 Score=26.55 Aligned_cols=29 Identities=14% Similarity=0.394 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 171 MGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 171 ~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
.+++||.|+.+-+.++...++||.++++.
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888889999999999988664
No 99
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=21.24 E-value=3.6e+02 Score=23.05 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=35.0
Q ss_pred HHHHHHhhc---CCCCCc-hhhhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038418 135 ELKQCYLKK---QFDFSP-EKTMVSAEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEES 196 (487)
Q Consensus 135 ~LK~~y~~~---~~~~~~-~~~~l~aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~ 196 (487)
+-|+.|... +++..- ....|..-++|+-.-|...|.--=.||..+..+|-||..|+.+..++
T Consensus 24 EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 24 ETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 357777753 232221 11223444444433443444444445556788899999999999887
No 100
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.19 E-value=1.5e+02 Score=24.02 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=23.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038418 159 QELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEE 195 (487)
Q Consensus 159 ~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e 195 (487)
..+..-+...+..+++|+.++.....++..|+.+|.+
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666677777777777777777766643
No 101
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.96 E-value=4.1e+02 Score=23.04 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=30.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHH
Q 038418 158 IQELKSLLKTYEIMGKKLESQLKLKDSE-------IIFLKEKLEESN 197 (487)
Q Consensus 158 i~e~q~ll~tye~~~~kLe~e~~~KDse-------i~~Lk~kL~e~~ 197 (487)
..|.|..+..|+..+..||+|+.....+ ...||.+++++.
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888889999999999999887654 455666665543
No 102
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=20.75 E-value=4.6e+02 Score=23.50 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHhhcCC
Q 038418 98 STVKSSYVQLQHAQSP 113 (487)
Q Consensus 98 SslKaAY~qLQ~Ah~P 113 (487)
..||.||-+||..+||
T Consensus 21 ~eIk~aYr~l~~~~HP 36 (174)
T 3hho_A 21 SLLSSQFRALQKRFHP 36 (174)
T ss_dssp HHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHCc
Confidence 4699999999999998
No 103
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.49 E-value=4.5e+02 Score=24.95 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHh
Q 038418 239 SIRSFVRLMIDELKS 253 (487)
Q Consensus 239 Sir~F~KlLi~~Mk~ 253 (487)
++.+|++-|+.-+.+
T Consensus 107 a~e~~~~~LLpVlDn 121 (213)
T 4ani_A 107 RAQSLASDLLPVLDN 121 (213)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 455666666655543
No 104
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.48 E-value=2.1e+02 Score=24.19 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 038418 156 AEIQELKSLLKTYEIMGKKLESQLKLKDSEIIFLKEKLEESNKQ 199 (487)
Q Consensus 156 aei~e~q~ll~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~~~ 199 (487)
.=+.-+...++.++..+++|+.++..+-..|..+.+.|.++.++
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33556677777888888999999999999999999888887653
No 105
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.32 E-value=2.2e+02 Score=20.20 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038418 167 TYEIMGKKLESQLKLKDSEIIFLKEKLEESN 197 (487)
Q Consensus 167 tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~ 197 (487)
-.|.-+++|-.+...=..|+.+||+.|.++.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 3444455555555555567777777776653
No 106
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.17 E-value=2.6e+02 Score=22.91 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 038418 172 GKKLESQLKLKDSEIIFLKEK 192 (487)
Q Consensus 172 ~~kLe~e~~~KDsei~~Lk~k 192 (487)
-++|-.++..|+.||..||++
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999887
No 107
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.16 E-value=1.9e+02 Score=20.51 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038418 166 KTYEIMGKKLESQLKLKDSEIIFLKEKLEESN 197 (487)
Q Consensus 166 ~tye~~~~kLe~e~~~KDsei~~Lk~kL~e~~ 197 (487)
+-.|.-+++|-.+...=..|+.+||+-|.++.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 34455566666666666677788888777653
No 108
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.12 E-value=1.6e+02 Score=24.24 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhHh
Q 038418 173 KKLESQLKLKDSEIIFLKEKLEESNKQNKA 202 (487)
Q Consensus 173 ~kLe~e~~~KDsei~~Lk~kL~e~~~~n~~ 202 (487)
.+||+.++.-=..|..|+.+++++..+|..
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
Done!