BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>038426
MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDSESEESPSEGDIKKQELLARI
AMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQA
FEESAEENRMEIEENDSKRPERGLFFKSLGQKKPVGKAKATEEVKKIKEITTESAGSKTR
RNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLHEQGMLSETEKRGHEKP
DREKK

High Scoring Gene Products

Symbol, full name Information P value
AT3G09050 protein from Arabidopsis thaliana 4.1e-65

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  038426
        (245 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2095299 - symbol:AT3G09050 "AT3G09050" species...   663  4.1e-65   1


>TAIR|locus:2095299 [details] [associations]
            symbol:AT3G09050 "AT3G09050" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0010027 "thylakoid membrane organization" evidence=RCA]
            [GO:0016556 "mRNA modification" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0009535 EMBL:AC009326 EMBL:BT011671
            EMBL:AK221453 IPI:IPI00516978 RefSeq:NP_187517.1 UniGene:At.43210
            UniGene:At.74018 STRING:Q9SS82 PaxDb:Q9SS82 PRIDE:Q9SS82
            EnsemblPlants:AT3G09050.1 GeneID:820058 KEGG:ath:AT3G09050
            TAIR:At3g09050 eggNOG:NOG277957 HOGENOM:HOG000030309
            InParanoid:Q9SS82 OMA:SKMQAFE PhylomeDB:Q9SS82
            ProtClustDB:CLSN2684969 Genevestigator:Q9SS82 Uniprot:Q9SS82
        Length = 258

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 146/257 (56%), Positives = 174/257 (67%)

Query:     1 MIALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCKSKDXXXXXXXX------XGDIKKQ 54
             M  L A QT LTP  H+LF+  R + +R  F+ L KS D               GD ++Q
Sbjct:     2 MNTLHAFQTTLTPNFHVLFNASRHSLSRPQFLCLSKSGDGTSDSDSDPDPPKPEGDTRRQ 61

Query:    55 ELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENI 114
             ELLARIAM+Q  KVRLTD+LDERS YLT+FAEEANAEFDK+GEDA+K LDEAS+RI+ENI
Sbjct:    62 ELLARIAMIQTSKVRLTDFLDERSEYLTKFAEEANAEFDKVGEDAMKDLDEASTRILENI 121

Query:   115 ESQMQAFEESAEENRMEIEENDSKRPE----------RGLFFKSLGQKKPVGXXXXXXXX 164
             ES+MQAFEESA  NR+EIEEND+K  E           GLFFKSL  KKPV         
Sbjct:   122 ESKMQAFEESAGLNRLEIEENDNKLAEFEEKIQVDRNEGLFFKSLRDKKPVDREQAREET 181

Query:   165 XXXXXXXXXSAGSKTRRNIYLAFIGLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLH 224
                      SAGSK+RRNIYL  IG++V+ IADSF+SS DWRKVA+LGAILVPLL QF++
Sbjct:   182 EKIQEVTKESAGSKSRRNIYLGLIGIVVLAIADSFVSSPDWRKVAILGAILVPLLTQFVY 241

Query:   225 EQGMLSETEKRGHEKPD 241
             EQ +LSE +K    K +
Sbjct:   242 EQTLLSEADKGKENKKE 258


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      245       219   0.00092  112 3  11 22  0.40    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  144 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.03u 0.11s 22.14t   Elapsed:  00:00:01
  Total cpu time:  22.03u 0.11s 22.14t   Elapsed:  00:00:01
  Start:  Sat May 11 06:55:48 2013   End:  Sat May 11 06:55:49 2013

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