BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038426
         (245 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P55914|YJJZ_ECOLI Uncharacterized protein YjjZ OS=Escherichia coli (strain K12)
           GN=yjjZ PE=4 SV=1
          Length = 78

 Score = 33.5 bits (75), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 189 GLLVIGIADSFISSSDWRKVAVLGAILVPLLLQFLHEQ 226
           GLL+ G+  + +SS  WR V ++G +L P++L   H+Q
Sbjct: 16  GLLIAGLMYADLSSDQWRIVILMGLVLTPMML--YHKQ 51


>sp|Q5B6I7|FCJ1_EMENI Formation of crista junctions protein 1 OS=Emericella nidulans
           (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
           M139) GN=fcj1 PE=3 SV=1
          Length = 618

 Score = 32.7 bits (73), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 75  DERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEESAEE--NRM-E 131
           DE SA  ++   +A  E  KIGE  L   DEA     E IE     F+ESA E   R  E
Sbjct: 279 DEDSAKYSKPVAKAKEELQKIGEQILSVRDEARRAAQEEIEKAHATFDESARELIRRFEE 338

Query: 132 IEENDS 137
           +  ND+
Sbjct: 339 VRANDA 344


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.341 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,006,463
Number of Sequences: 539616
Number of extensions: 3036604
Number of successful extensions: 12950
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 281
Number of HSP's that attempted gapping in prelim test: 12765
Number of HSP's gapped (non-prelim): 453
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)