Query 038426
Match_columns 245
No_of_seqs 21 out of 23
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 18:58:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k66_A Beta-amyloid-like prote 53.4 1.2E+02 0.004 27.2 10.3 75 60-134 15-89 (239)
2 3trt_A Vimentin; cytoskeleton, 51.1 52 0.0018 23.1 6.4 55 81-135 7-61 (77)
3 3pmr_A Amyloid-like protein 1; 28.6 2.6E+02 0.0089 24.5 8.5 67 59-134 26-94 (219)
4 3ljm_A Coil Ser L9C; de novo d 26.7 82 0.0028 20.0 3.6 22 106-127 5-26 (31)
5 3ghg_A Fibrinogen alpha chain; 24.7 2.6E+02 0.0088 27.8 8.4 133 70-207 83-231 (562)
6 3umh_A Amyloid beta A4 protein 22.7 3.7E+02 0.013 23.4 8.3 65 61-134 21-87 (211)
7 3vkg_A Dynein heavy chain, cyt 22.2 3E+02 0.01 32.4 9.5 56 85-140 1985-2045(3245)
8 2k48_A Nucleoprotein; viral pr 21.6 2.1E+02 0.0073 22.8 6.0 49 82-130 55-103 (107)
9 2dfs_A Myosin-5A; myosin-V, in 21.5 6.7E+02 0.023 26.0 11.2 60 78-138 986-1045(1080)
10 3f6n_A Virion-associated prote 21.5 1.6E+02 0.0054 24.2 5.3 51 74-124 11-63 (129)
11 1x8y_A Lamin A/C; structural p 20.8 1.9E+02 0.0065 21.2 5.3 28 100-127 37-64 (86)
12 1q02_A Sequestosome 1; helical 20.8 71 0.0024 22.6 2.7 38 45-91 2-39 (52)
13 3arc_L Photosystem II reaction 20.8 89 0.003 20.8 3.0 19 179-197 13-31 (37)
14 3mov_A Lamin-B1; LMNB1, B-type 20.5 1.9E+02 0.0063 21.9 5.3 30 99-128 45-74 (95)
No 1
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=53.39 E-value=1.2e+02 Score=27.16 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=59.5
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 038426 60 IAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEESAEENRMEIEE 134 (245)
Q Consensus 60 iamLQ~~KvRvtdfvdErS~~L~~~AeeA~aEfDkIa~da~k~LDeA~~~ime~ies~m~afEE~~~~~R~EiE~ 134 (245)
=+.++..|.|+.+.=-+|-...-+==++|...|..+--.--|+.+..-..+++..-..++++|++.+.-|+++++
T Consensus 15 H~~f~~Ak~rLe~~hr~km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~e 89 (239)
T 3k66_A 15 HDDFKKAEMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEA 89 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 356778888888877777666665567788888777666667777778899999999999999999999988765
No 2
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=51.06 E-value=52 Score=23.11 Aligned_cols=55 Identities=9% Similarity=0.187 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 038426 81 LTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEESAEENRMEIEEN 135 (245)
Q Consensus 81 L~~~AeeA~aEfDkIa~da~k~LDeA~~~ime~ies~m~afEE~~~~~R~EiE~~ 135 (245)
|..+-.+-.++||.|+..-...++.-...=++.+...+..-.+.+..++.||-+.
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~el 61 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEY 61 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556677788888888888888887776667777777777777777777766443
No 3
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=28.62 E-value=2.6e+02 Score=24.53 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=48.5
Q ss_pred HHHHHhhhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-hHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 038426 59 RIAMLQAQKVRLTDYLDER-SAYLTQFAEEANAEFDKIGEDALKGLDEAS-SRIMENIESQMQAFEESAEENRMEIEE 134 (245)
Q Consensus 59 ~iamLQ~~KvRvtdfvdEr-S~~L~~~AeeA~aEfDkIa~da~k~LDeA~-~~ime~ies~m~afEE~~~~~R~EiE~ 134 (245)
+=+.++..|.|+..+=-+| +.-+++.+| |...+ +.|-.|+ ..+++..-..++++|++.+.-|.++++
T Consensus 26 EH~~f~~Ak~rLe~~hr~k~~~VmkEW~e-ae~q~--------k~lpkadkk~m~~rFQ~~v~aLE~E~~~ErqqL~e 94 (219)
T 3pmr_A 26 EHEGFLRAKMDLEERRMRQINEVMREWAM-ADNQS--------KNLPKADRQALNEHFQSILQTLEEQVSGERQRLVE 94 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTT--------TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--------hccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4567888999998888888 666666655 43332 3333332 467888999999999999998887765
No 4
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=26.70 E-value=82 Score=20.02 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 038426 106 ASSRIMENIESQMQAFEESAEE 127 (245)
Q Consensus 106 A~~~ime~ies~m~afEE~~~~ 127 (245)
|-.+--+.+||++|++|..++.
T Consensus 5 alekkcaalesklqalekklea 26 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567789999999987753
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.71 E-value=2.6e+02 Score=27.81 Aligned_cols=133 Identities=14% Similarity=0.229 Sum_probs=54.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCC-----
Q 038426 70 LTDYLDERSAYLTQFAEEANAEFD----KIGEDALKGLDEASSRIMENIESQMQAFEESAEENRMEIEENDSKRP----- 140 (245)
Q Consensus 70 vtdfvdErS~~L~~~AeeA~aEfD----kIa~da~k~LDeA~~~ime~ies~m~afEE~~~~~R~EiE~~e~~l~----- 140 (245)
+..|+..-.++|++-..+++ +.| .|.++-.+.+...-.+|-.+| +++++++-.++..|.+|...|.-+.
T Consensus 83 seqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 83 SHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555554444444 222 233333444444556666677 7777888888888888876665433
Q ss_pred CccccccccCCCCCcchhhhHHHHHHHHH-hhhhccCcchhHHHHHHHHHHHHHHHHhhhccC------CchhH
Q 038426 141 ERGLFFKSLGQKKPVGKAKATEEVKKIKE-ITTESAGSKTRRNIYLAFIGLLVIGIADSFISS------SDWRK 207 (245)
Q Consensus 141 nEGlFFKsL~~~~p~~k~~akeEaeKik~-Var~sagSktR~nvYl~li~lL~l~Iv~~v~ss------~dw~K 207 (245)
=.|===+++-- -++.+.=...-+.+.. .++.-.-++.|.++|+.=|--|-=. |++.|-+ ++|+-
T Consensus 161 CKgsCsr~~~~--~vd~~sY~~~QKQLeQv~a~dL~p~~~~q~Lp~lKmrP~kD~-Vp~~fKsq~q~~~~e~ka 231 (562)
T 3ghg_A 161 CRGSCSRALAR--EVDLKDYEDQQKQLEQVIAKDLLPSRDRQHLPLIKMKPVPDL-VPGNFKSQLQKVPPEWKA 231 (562)
T ss_dssp GGGTBSCCCCC--CCCHHHHHHHHHHHHHHHTTCCCCSCCCC--------------------------------
T ss_pred ccccccchhee--ecchHHHHHHHHHHHHHhhcccCCccccccchhccccccccc-CchhhhhhccccCHHHHH
Confidence 11111111111 1444422222222233 3455677888899998877655444 6666632 46864
No 6
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=22.69 E-value=3.7e+02 Score=23.41 Aligned_cols=65 Identities=26% Similarity=0.425 Sum_probs=44.5
Q ss_pred HHHhhhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-hHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 038426 61 AMLQAQKVRLTDYLDER-SAYLTQFAEEANAEFDKIGEDALKGLDEAS-SRIMENIESQMQAFEESAEENRMEIEE 134 (245)
Q Consensus 61 amLQ~~KvRvtdfvdEr-S~~L~~~AeeA~aEfDkIa~da~k~LDeA~-~~ime~ies~m~afEE~~~~~R~EiE~ 134 (245)
+.++..|.|+..+=-+| +.-+++.+ +|.+.+ |.|.-|. ..+|+..-+.++++|++.+.-|.++++
T Consensus 21 ~~f~~Ak~~Le~~hr~k~~~VmkEW~-eae~q~--------k~l~kadkk~~~~rFQ~~v~aLE~E~~~ErqqL~e 87 (211)
T 3umh_A 21 AHFQKAKERLEAKHRERMSQVMREWE-EAERQA--------KNLPKADKKAVIQHFQEKVESLEQEAANERQQLVE 87 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTT--------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--------HhcchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 56778888888877777 44555554 344443 3333332 467888899999999999988887754
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.15 E-value=3e+02 Score=32.39 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHH-----hHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCC
Q 038426 85 AEEANAEFDKIGEDALKGLDEAS-----SRIMENIESQMQAFEESAEENRMEIEENDSKRP 140 (245)
Q Consensus 85 AeeA~aEfDkIa~da~k~LDeA~-----~~ime~ies~m~afEE~~~~~R~EiE~~e~~l~ 140 (245)
++...+|...+.+++.+.|++|- -.-++.+|.++.+-++.++..++++.+.+.+++
T Consensus 1985 ~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~ 2045 (3245)
T 3vkg_A 1985 LDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIA 2045 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666677777777753 233455555555555555555665555555544
No 8
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.55 E-value=2.1e+02 Score=22.76 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHhhH
Q 038426 82 TQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEESAEENRM 130 (245)
Q Consensus 82 ~~~AeeA~aEfDkIa~da~k~LDeA~~~ime~ies~m~afEE~~~~~R~ 130 (245)
+|..++|...|.+=-++.+|.-=..-..+...|+.++.++...++...+
T Consensus 55 rQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 55 RQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999999999999999999999999999988776
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=21.51 E-value=6.7e+02 Score=26.03 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhcc
Q 038426 78 SAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEESAEENRMEIEENDSK 138 (245)
Q Consensus 78 S~~L~~~AeeA~aEfDkIa~da~k~LDeA~~~ime~ies~m~afEE~~~~~R~EiE~~e~~ 138 (245)
-..|..-.++.+.++++...+ .+.+++...+..++++.++..++++...-|+++++.+..
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke-~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTE-KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666665443 556677777778888888888888888888887777643
No 10
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=21.46 E-value=1.6e+02 Score=24.19 Aligned_cols=51 Identities=10% Similarity=0.231 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHhHHHHHHHHHHHHHHHH
Q 038426 74 LDERSAYLTQFAEEANAEFDKIGEDAL--KGLDEASSRIMENIESQMQAFEES 124 (245)
Q Consensus 74 vdErS~~L~~~AeeA~aEfDkIa~da~--k~LDeA~~~ime~ies~m~afEE~ 124 (245)
++|=-+.++++..+-++=+++++.--. -.|+.++++|+-+|-.+|..||=.
T Consensus 11 i~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkId~CeCn 63 (129)
T 3f6n_A 11 VSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLINDCPCN 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHTCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHhcCcch
Confidence 334444455555566666677776333 568889999999999999988743
No 11
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.78 E-value=1.9e+02 Score=21.16 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=15.3
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHHH
Q 038426 100 LKGLDEASSRIMENIESQMQAFEESAEE 127 (245)
Q Consensus 100 ~k~LDeA~~~ime~ies~m~afEE~~~~ 127 (245)
+..++..-.++-..|+++++++++-+-.
T Consensus 37 i~~lE~el~~~r~e~~~ql~EYq~Llnv 64 (86)
T 1x8y_A 37 LAEKEREMAEMRARMQQQLDEYQELLDI 64 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666666666555444
No 12
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=20.76 E-value=71 Score=22.61 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=25.7
Q ss_pred CCCCCChHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 038426 45 SPSEGDIKKQELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAE 91 (245)
Q Consensus 45 ~~~~GD~~~Qe~La~iamLQ~~KvRvtdfvdErS~~L~~~AeeA~aE 91 (245)
.||..||++++.|.+|... | ++...-.|+++.+..+-.
T Consensus 2 ~p~~~D~rl~~al~qMl~M--G-------F~negGWLt~LL~~k~gD 39 (52)
T 1q02_A 2 SPPEADPRLIESLSQMLSM--G-------FSDEGGWLTRLLQTKNYD 39 (52)
T ss_dssp CCTTSCHHHHHHHHHHHTT--T-------CCCTTSHHHHHHHHTTTC
T ss_pred CCCCcChHHHHHHHHHHHc--C-------CCccccHHHHHHHHccCC
Confidence 5789999999999887532 1 234556677766655533
No 13
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=20.75 E-value=89 Score=20.80 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 038426 179 TRRNIYLAFIGLLVIGIAD 197 (245)
Q Consensus 179 tR~nvYl~li~lL~l~Iv~ 197 (245)
.|--+|+||..++++++.-
T Consensus 13 NRTSLy~GLLlifvlavlF 31 (37)
T 3arc_L 13 NRTSLYLGLLLILVLALLF 31 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHh
Confidence 4678999998887777653
No 14
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=20.51 E-value=1.9e+02 Score=21.90 Aligned_cols=30 Identities=13% Similarity=0.327 Sum_probs=20.5
Q ss_pred HhhhhhHHHhHHHHHHHHHHHHHHHHHHHh
Q 038426 99 ALKGLDEASSRIMENIESQMQAFEESAEEN 128 (245)
Q Consensus 99 a~k~LDeA~~~ime~ies~m~afEE~~~~~ 128 (245)
.+..|+..-.++-..|+.+++++++-+-..
T Consensus 45 ~i~~lE~eL~~~r~e~~~ql~EYq~LlnvK 74 (95)
T 3mov_A 45 MLTDKEREMAEIRDQMQQQLNDYEQLLDVK 74 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777778888888887766554
Done!