Query 038426
Match_columns 245
No_of_seqs 21 out of 23
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 18:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038426.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038426hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 36.8 29 0.0021 25.1 5.4 63 70-132 39-101 (144)
2 d1gs9a_ a.24.1.1 (A:) Apolipop 32.2 42 0.003 24.2 5.6 55 70-124 83-137 (144)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 23.4 35 0.0025 21.1 3.0 19 179-197 13-31 (37)
4 d1rh1a2 f.1.1.1 (A:313-511) Co 18.7 2.2E+02 0.016 22.7 8.3 89 61-152 8-109 (199)
5 d1izna_ e.43.1.1 (A:) Capz alp 17.4 44 0.0032 27.6 3.5 45 107-160 219-263 (275)
6 d2k0bx1 a.5.2.1 (X:1-52) Seque 16.1 49 0.0036 21.8 2.7 18 45-62 2-19 (52)
7 d7reqa1 c.1.19.1 (A:4-560) Met 15.3 3.7E+02 0.027 23.8 10.5 58 83-152 412-473 (557)
8 d1h3ob_ a.22.1.3 (B:) TAF(II)- 15.3 1.2E+02 0.0091 20.5 4.9 29 50-87 23-51 (74)
9 d1tdja2 d.58.18.2 (A:336-423) 13.7 63 0.0046 22.3 3.0 34 3-36 16-49 (88)
10 d1ivsa1 a.2.7.3 (A:797-862) Va 13.4 58 0.0042 20.8 2.5 31 113-143 1-31 (66)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=36.79 E-value=29 Score=25.14 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=38.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHhhHhh
Q 038426 70 LTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEESAEENRMEI 132 (245)
Q Consensus 70 vtdfvdErS~~L~~~AeeA~aEfDkIa~da~k~LDeA~~~ime~ies~m~afEE~~~~~R~Ei 132 (245)
|+.++.+...-|..-+++-...+..++++....|......+=++|...|.+..+.+.....|+
T Consensus 39 l~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel 101 (144)
T d1gs9a_ 39 LRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEV 101 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666555555555566666666666666666666666666666666655555554
No 2
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=32.17 E-value=42 Score=24.18 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHH
Q 038426 70 LTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEASSRIMENIESQMQAFEES 124 (245)
Q Consensus 70 vtdfvdErS~~L~~~AeeA~aEfDkIa~da~k~LDeA~~~ime~ies~m~afEE~ 124 (245)
|..+++|=..-|...+++-++.+++..++.-..|..-...+-.++...++++.+.
T Consensus 83 l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel~~k 137 (144)
T d1gs9a_ 83 LGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKR 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334443333333333333333333334444444444444433
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.36 E-value=35 Score=21.15 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 038426 179 TRRNIYLAFIGLLVIGIAD 197 (245)
Q Consensus 179 tR~nvYl~li~lL~l~Iv~ 197 (245)
.|--+|+||..+++++|.-
T Consensus 13 NrtsLy~GlLlifvl~vLF 31 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALLF 31 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 3667999998888777653
No 4
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.75 E-value=2.2e+02 Score=22.70 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=46.5
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhH---HHhHHHHHHHHHHHHHHHHHHHhhH
Q 038426 61 AMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDA-------LKGLDE---ASSRIMENIESQMQAFEESAEENRM 130 (245)
Q Consensus 61 amLQ~~KvRvtdfvdErS~~L~~~AeeA~aEfDkIa~da-------~k~LDe---A~~~ime~ies~m~afEE~~~~~R~ 130 (245)
-+|+..=-.+.+|-++=++|+-.-...--.| ||+++ .+-.|+ +..+++.|++.++.+=+..+=.+-.
T Consensus 8 ~~lkda~e~~~~~~~~i~e~~G~Ky~~lA~e---lA~~~~~fkGK~IRs~~dAl~s~eK~~~n~nkKin~kDr~AI~~Al 84 (199)
T d1rh1a2 8 TVLTKTSEVIISVGDKVGEYLGDKYKALSRE---IAENINNFQGKTIRSYDDAMSSINKLMANPSLKINATDKEAIVNAW 84 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH---HHHHHHHCTTCCCCCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCccccCHHHHHHHHHHHHhChhhhcccccHHHHHHHH
Confidence 4466666778889999888875533332222 45443 233333 4456666666666555544433222
Q ss_pred ---hhhhhhccCCCccccccccCCC
Q 038426 131 ---EIEENDSKRPERGLFFKSLGQK 152 (245)
Q Consensus 131 ---EiE~~e~~l~nEGlFFKsL~~~ 152 (245)
+.+..-+.|.+=|-+|+-.+..
T Consensus 85 ~sid~~~ma~nl~k~sK~f~~~~~~ 109 (199)
T d1rh1a2 85 KAFNAEDMGNKFAALGKTFKAADYA 109 (199)
T ss_dssp HHCCHHHHHHTTSSSSSCSSSTTHH
T ss_pred HHcCHHHHHHHHHHHHhhhccchhh
Confidence 2222223344555556555443
No 5
>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=17.44 E-value=44 Score=27.65 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=29.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCCccccccccCCCCCcchhhh
Q 038426 107 SSRIMENIESQMQAFEESAEENRMEIEENDSKRPERGLFFKSLGQKKPVGKAKA 160 (245)
Q Consensus 107 ~~~ime~ies~m~afEE~~~~~R~EiE~~e~~l~nEGlFFKsL~~~~p~~k~~a 160 (245)
...|+..|+..=.+++.++..+=+.+ |++.| |+|+...|+-+-|.
T Consensus 219 A~~iv~~I~~~E~~~q~~l~e~f~~l--------s~~~F-K~LRR~LPVTR~Ki 263 (275)
T d1izna_ 219 AKEFIKIIENAENEYQTAISENYQTM--------SDTTF-KALRRQLPVTRTKI 263 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHTHH-HHHSCSSCTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--------CHHHH-HHHHhhCCcCCccc
Confidence 44555555555555555555554444 66766 99999999888543
No 6
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.08 E-value=49 Score=21.80 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHHHH
Q 038426 45 SPSEGDIKKQELLARIAM 62 (245)
Q Consensus 45 ~~~~GD~~~Qe~La~iam 62 (245)
+||+-||+.+++|.+|..
T Consensus 2 ~pp~~dp~l~~al~qM~a 19 (52)
T d2k0bx1 2 SPPEADPRLIESLSQMLS 19 (52)
T ss_dssp CCTTTSTTHHHHHHHHHH
T ss_pred CCcccChHHHHHHHHHHH
Confidence 578889999999998754
No 7
>d7reqa1 c.1.19.1 (A:4-560) Methylmalonyl-CoA mutase alpha subunit, domain 1 {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=15.32 E-value=3.7e+02 Score=23.83 Aligned_cols=58 Identities=16% Similarity=0.288 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHH--HHHHHHHHHHHhhHhhhhhhccCC--CccccccccCCC
Q 038426 83 QFAEEANAEFDKIGEDALKGLDEASSRIMENIES--QMQAFEESAEENRMEIEENDSKRP--ERGLFFKSLGQK 152 (245)
Q Consensus 83 ~~AeeA~aEfDkIa~da~k~LDeA~~~ime~ies--~m~afEE~~~~~R~EiE~~e~~l~--nEGlFFKsL~~~ 152 (245)
++++.|-+.|+.|-. +.|+ ++-|++ .-.+++++...-..+|+..++.+- |+ |.++..+
T Consensus 412 ~l~~~aw~~f~~IE~--~GG~-------~~al~~G~~q~~I~~sa~~~~~~i~~~~~~iVGVN~---f~~~~e~ 473 (557)
T d7reqa1 412 DLARKAWGHIQEVEK--VGGM-------AKAIEKGIPKMRIEEAAARTQARIDSGRQPLIGVNK---YRLEHEP 473 (557)
T ss_dssp HHHHHHHHHHHHHHH--TTCH-------HHHHHTTHHHHHHHHHHHHHHHHHHHTSSCCBTTTB---SCCSSCC
T ss_pred HHHHHHHHHHHHHHc--ccHH-------HHHHHcChHHHHHHHHHHHHHHHHHcCCCeEEEeeC---CCCCCCC
Confidence 789999999999843 3343 333442 223467777777778888877766 54 4555544
No 8
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.29 E-value=1.2e+02 Score=20.52 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Q 038426 50 DIKKQELLARIAMLQAQKVRLTDYLDERSAYLTQFAEE 87 (245)
Q Consensus 50 D~~~Qe~La~iamLQ~~KvRvtdfvdErS~~L~~~Aee 87 (245)
|+.+.|+|.+|| +||||.-....-++|.-
T Consensus 23 d~~vee~ll~iA---------DdFV~~V~~~ac~lAKh 51 (74)
T d1h3ob_ 23 DEDVEEMLLQIA---------DDFIESVVTAACQLARH 51 (74)
T ss_dssp CHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence 899999999997 79999887777777754
No 9
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.70 E-value=63 Score=22.33 Aligned_cols=34 Identities=9% Similarity=0.009 Sum_probs=24.3
Q ss_pred hhhhhhhhcCCCcccccccccCCCCCCcceeeee
Q 038426 3 ALKAIQTALTPTAHLLFHTRRLTGTRTSFVSLCK 36 (245)
Q Consensus 3 al~~~~~~~~ps~~~~~~~~r~~~~r~s~~~~c~ 36 (245)
||+.+...+-|.+.|.||-|-........++...
T Consensus 16 af~~F~~~lg~~nITeF~YR~~~~~~a~VlvGi~ 49 (88)
T d1tdja2 16 SFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVR 49 (88)
T ss_dssp CSHHHHHTTSSSEEEEEEEECCCSSBCEEEEEEE
T ss_pred HHHHHHHhcCcCceEEEEEEccCCCCeEEEEEEE
Confidence 3455556777888888998666666678878773
No 10
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=13.37 E-value=58 Score=20.82 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhhhccCCCcc
Q 038426 113 NIESQMQAFEESAEENRMEIEENDSKRPERG 143 (245)
Q Consensus 113 ~ies~m~afEE~~~~~R~EiE~~e~~l~nEG 143 (245)
+++++...++-.++....+|+..+++|.|++
T Consensus 1 D~~~E~~RL~K~l~kl~~~i~~~~~kL~N~~ 31 (66)
T d1ivsa1 1 DVEEWRRRQEKRLKELLALAERSQRKLASPG 31 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCChH
Confidence 4788888889999999999999999999987
Done!