BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>038428
MANVMPHRKLSTTTIHIMALDGIIHVNSLFTLGLFLGLTLYPDPAATLVSGSCSAGLAIA
ENLVSCHVYSFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILV
SAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAF
SR

High Scoring Gene Products

Symbol, full name Information P value
AT3G46890 protein from Arabidopsis thaliana 2.6e-31
MEE60
AT5G05950
protein from Arabidopsis thaliana 1.8e-30
AT3G07510 protein from Arabidopsis thaliana 7.0e-22

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  038428
        (182 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2102742 - symbol:AT3G46890 "AT3G46890" species...   344  2.6e-31   1
TAIR|locus:2153689 - symbol:MEE60 "AT5G05950" species:370...   336  1.8e-30   1
TAIR|locus:2079666 - symbol:AT3G07510 "AT3G07510" species...   255  7.0e-22   1


>TAIR|locus:2102742 [details] [associations]
            symbol:AT3G46890 "AT3G46890" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL096859
            HOGENOM:HOG000240599 ProtClustDB:CLSN2721714 EMBL:BT010845
            EMBL:BT011314 IPI:IPI00547121 PIR:T12959 RefSeq:NP_190273.1
            UniGene:At.35872 EnsemblPlants:AT3G46890.1 GeneID:823842
            KEGG:ath:AT3G46890 TAIR:At3g46890 eggNOG:NOG237103 OMA:GTSIHIT
            PhylomeDB:Q9STG1 Genevestigator:Q9STG1 Uniprot:Q9STG1
        Length = 204

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 94/189 (49%), Positives = 108/189 (57%)

Query:     8 RKLSTTTIHIMALDGIIHVNSXXXXXXXXXXXXYPD---PAATLVSGS-----C-SA-GL 57
             R L TT IH+ A+DGI++VNS              +   P ++  S +     C SA G 
Sbjct:    14 RLLPTTLIHVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISAKGP 73

Query:    58 AIAENLVSCHVYXXXXXXXXXXXXXXXKQAIKIA----NGN-REYEERGLSMTNLRVNLM 112
             A+AE LVS HVY               KQAI+      NGN  E E R L+    RVNL 
Sbjct:    74 ALAERLVSSHVYSFSLFLFSSLIAMSLKQAIRTTTTTTNGNCLEEEARVLNAGEGRVNLA 133

Query:   113 VLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCK-SFHTLAAISPLVTLVPLALAI 171
              LR GI+ S V SV GCGFLTMALV++VQIKLG L CK SFH LAAI PLV LVP AL I
Sbjct:   134 ALRVGIVASCVASVLGCGFLTMALVDLVQIKLGPLECKRSFHALAAIVPLVVLVPSALII 193

Query:   172 YVGLVLYAF 180
             YV LVLYAF
Sbjct:   194 YVFLVLYAF 202


>TAIR|locus:2153689 [details] [associations]
            symbol:MEE60 "AT5G05950" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009793
            "embryo development ending in seed dormancy" evidence=IMP]
            [GO:0006661 "phosphatidylinositol biosynthetic process"
            evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009793
            EMBL:AB017060 HOGENOM:HOG000240599 ProtClustDB:CLSN2721714
            EMBL:AY086454 EMBL:BT025529 EMBL:AK228786 IPI:IPI00528332
            RefSeq:NP_196214.1 UniGene:At.32928 STRING:Q9FI91
            EnsemblPlants:AT5G05950.1 GeneID:830480 KEGG:ath:AT5G05950
            TAIR:At5g05950 eggNOG:NOG248420 InParanoid:Q9FI91 OMA:FIGLAWN
            PhylomeDB:Q9FI91 Genevestigator:Q9FI91 Uniprot:Q9FI91
        Length = 175

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 79/174 (45%), Positives = 102/174 (58%)

Query:    12 TTTIHIMALDGIIHVNSXXXXXXXXXXXXYP-DPAATLVSG-SCSAGLAIAENLVSCHVY 69
             TT+IHI ALDGI++VNS             P DP  +LV+  +C     +AENLV+ HVY
Sbjct:     2 TTSIHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPNCVPTARMAENLVAFHVY 61

Query:    70 XXXXXXXXXXXXXXXKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGC 129
                            KQA+++   +  +    +      VN   LRFG++ S +GSV GC
Sbjct:    62 SFASFLFSSLIALGLKQAMRLNIASSFHISTRIDPVVYYVNKTALRFGMVTSGLGSVCGC 121

Query:   130 GFLTMALVNMVQIKLGVLGC-KSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR 182
             GFL +AL+N+VQIKLG LGC  S HT AA+ PLV LVP AL IYV L+LYAF+R
Sbjct:   122 GFLMLALINVVQIKLGTLGCGASGHTYAAVVPLVILVPSALFIYVSLMLYAFTR 175


>TAIR|locus:2079666 [details] [associations]
            symbol:AT3G07510 "AT3G07510" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002686 GenomeReviews:BA000014_GR
            UniGene:At.48631 UniGene:At.71201 EMBL:AF370475 EMBL:AY081696
            IPI:IPI00522062 RefSeq:NP_001078120.1 RefSeq:NP_566310.1
            EnsemblPlants:AT3G07510.1 EnsemblPlants:AT3G07510.2 GeneID:819939
            KEGG:ath:AT3G07510 TAIR:At3g07510 eggNOG:NOG246438
            HOGENOM:HOG000240599 InParanoid:Q94K16 OMA:VIQIRLG PhylomeDB:Q94K16
            ProtClustDB:CLSN2721714 ArrayExpress:Q94K16 Genevestigator:Q94K16
            Uniprot:Q94K16
        Length = 189

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 59/172 (34%), Positives = 92/172 (53%)

Query:    10 LSTTTIHIMALDGIIHVNSXXXXXXXXXXX-XYPDPAATLVSGSCSAGLAIAENLVSCHV 68
             L+TT++H+ ALDG+++VNS              P   +     SC A   +A+ L+   V
Sbjct:    21 LATTSVHVSALDGLVNVNSLFTIAVFVGLSLATPGQHSLEQRSSCDASADVAKKLLVFEV 80

Query:    69 YXXXXXXXXXXXXXXXKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFG 128
                             K A+ + N +++  E    +    +N+ VLR+G++ SAVGSV G
Sbjct:    81 VSFSFFLFSSLVAQGLKLALNLLN-SKDVNE----IFRAHINIKVLRWGMMASAVGSVMG 135

Query:   129 CGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAF 180
             C FL +++VN++QI+LG+L C S     A++ LVTLV  AL IY+   +YAF
Sbjct:   136 CLFLMLSMVNVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAIYAF 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      182       155   0.00096  105 3  11 22  0.40    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  524 (56 KB)
  Total size of DFA:  113 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.62u 0.18s 11.80t   Elapsed:  00:00:00
  Total cpu time:  11.62u 0.18s 11.80t   Elapsed:  00:00:00
  Start:  Sat May 11 06:57:04 2013   End:  Sat May 11 06:57:04 2013

Back to top