BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038428
         (182 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozyme
 pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozyme
 pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozyme
 pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozyme
 pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozyme
 pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozyme
 pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozyme
 pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozyme
 pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozyme
 pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozyme
 pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozyme
 pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozyme
 pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozymes
 pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozymes
 pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozymes
 pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozymes
 pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozymes
 pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozymes
 pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozymes
 pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozymes
 pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozymes
 pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozymes
 pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozymes
 pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With Lysozymes
 pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With A Binding Peptide
 pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With A Binding Peptide
 pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With A Binding Peptide
 pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With A Binding Peptide
 pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With A Binding Peptide
 pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With A Binding Peptide
 pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With A Binding Peptide
 pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With A Binding Peptide
 pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With A Binding Peptide
 pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With A Binding Peptide
 pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With A Binding Peptide
 pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
           In Complex With A Binding Peptide
 pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
 pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
           In Complex With Beta-Casein
          Length = 436

 Score = 26.6 bits (57), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 101 GLSMTNLRVNLMVLRFGILVSAVGSVFGCGF---------LTMALVNMVQIKLGVLGCKS 151
           G ++ NL   L+ +   IL    GSV G GF         L   L++  +IK G+LG K 
Sbjct: 188 GGALLNLNGELIGINTAILAPGGGSV-GIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKG 246

Query: 152 FHTLAAIS 159
               A I+
Sbjct: 247 TEMSADIA 254


>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
           From Escherichia Coli
 pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
           From Escherichia Coli
 pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
           From Escherichia Coli
 pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
           From Escherichia Coli
 pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
           From Escherichia Coli
 pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
           From Escherichia Coli
 pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
           From Escherichia Coli
 pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
           From Escherichia Coli
 pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
           From Escherichia Coli
 pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
           From Escherichia Coli
 pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
           From Escherichia Coli
 pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
           From Escherichia Coli
          Length = 345

 Score = 26.6 bits (57), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 101 GLSMTNLRVNLMVLRFGILVSAVGSVFGCGF---------LTMALVNMVQIKLGVLGCKS 151
           G ++ NL   L+ +   IL    GSV G GF         L   L++  +IK G+LG K 
Sbjct: 188 GGALLNLNGELIGINTAILAPGGGSV-GIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKG 246

Query: 152 FHTLAAIS 159
               A I+
Sbjct: 247 TEMSADIA 254


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,796,951
Number of Sequences: 62578
Number of extensions: 108092
Number of successful extensions: 163
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 5
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)