BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038428
         (182 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1K601|LEPA_AZOSB Elongation factor 4 OS=Azoarcus sp. (strain BH72) GN=lepA PE=3 SV=1
          Length = 598

 Score = 32.3 bits (72), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 96  EYEERGLSMTNLRVNLMVLRFGILVS-AVGSVFGCGFLTMALVNMVQIKL 144
           EY++   S+  LR+N   L+F   VS A+G  F CGFL +  +++VQ +L
Sbjct: 306 EYDQLRDSLEKLRLNDAALQFEPEVSQALGFGFRCGFLGLLHMDIVQERL 355


>sp|A8YVQ1|LEPA_LACH4 Elongation factor 4 OS=Lactobacillus helveticus (strain DPC 4571)
           GN=lepA PE=3 SV=1
          Length = 612

 Score = 30.8 bits (68), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 94  NREYEERGLSMTNLRVNLMVLRFGILVS-AVGSVFGCGFLTMALVNMVQIKL 144
           NR+Y++   ++  L++N   L F    S A+G  F CGFL +  +++VQ +L
Sbjct: 313 NRDYDDLKEALQKLQLNDAALEFEPETSTALGFGFRCGFLGLLHMDVVQERL 364


>sp|Q5FJP6|LEPA_LACAC Elongation factor 4 OS=Lactobacillus acidophilus (strain ATCC
           700396 / NCK56 / N2 / NCFM) GN=lepA PE=3 SV=1
          Length = 612

 Score = 30.8 bits (68), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 94  NREYEERGLSMTNLRVNLMVLRFGILVS-AVGSVFGCGFLTMALVNMVQIKL 144
           NR+Y++   ++  L++N   L F    S A+G  F CGFL +  +++VQ +L
Sbjct: 313 NRDYDDLKEALQKLQLNDAALEFEPETSTALGFGFRCGFLGLLHMDVVQERL 364


>sp|Q54QD1|PKS23_DICDI Probable polyketide synthase 23 OS=Dictyostelium discoideum GN=pks23
            PE=3 SV=1
          Length = 2499

 Score = 30.8 bits (68), Expect = 5.2,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 28   SLFTLGLFLGLTLYPDPAATLV-SGSCSAGLAIAENLVSCHVYSFSSFLFSSLIASALKQ 86
            SLF LG    L LY      L+ SGS   GL+  + L    VY F  FLF ++ +   KQ
Sbjct: 1900 SLFELGR---LDLYGSTETVLIHSGSGGIGLSCIDLL---QVYGFKGFLFVTVGSEEKKQ 1953

Query: 87   AIKIANGN 94
             +K   GN
Sbjct: 1954 FLKDRYGN 1961


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.139    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,310,885
Number of Sequences: 539616
Number of extensions: 2055589
Number of successful extensions: 7204
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7201
Number of HSP's gapped (non-prelim): 11
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)