Query 038428
Match_columns 182
No_of_seqs 55 out of 57
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 10:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5567 Predicted small peripl 23.7 66 0.0014 23.0 2.0 20 111-130 2-21 (58)
2 PF15531 Toxin_51: Putative to 21.4 51 0.0011 26.9 1.2 39 3-42 44-85 (128)
3 PF02681 DUF212: Divergent PAP 20.0 1E+02 0.0022 25.2 2.7 22 75-96 11-32 (141)
4 PF01578 Cytochrom_C_asm: Cyto 17.3 4.1E+02 0.0088 21.6 5.7 70 62-131 70-146 (214)
5 PRK10881 putative hydrogenase 16.5 1.6E+02 0.0035 26.9 3.4 64 53-138 51-114 (394)
6 PF06692 MNSV_P7B: Melon necro 15.6 43 0.00094 24.0 -0.4 32 52-83 5-36 (61)
7 PF01560 HCV_NS1: Hepatitis C 15.5 27 0.00059 32.4 -1.8 31 75-115 13-43 (344)
8 PF04306 DUF456: Protein of un 14.6 2.3E+02 0.005 22.6 3.5 41 78-133 40-80 (140)
9 COG5056 ARE1 Acyl-CoA choleste 14.1 1.7E+02 0.0037 28.7 3.0 25 115-139 301-325 (512)
10 PRK09953 wcaD putative colanic 13.2 1.2E+02 0.0026 28.5 1.6 56 106-165 231-290 (404)
No 1
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=23.69 E-value=66 Score=23.00 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhhhhhHHHH
Q 038428 111 LMVLRFGILVSAVGSVFGCG 130 (182)
Q Consensus 111 ~~~LR~gmL~sa~GSV~Gc~ 130 (182)
++++|..|++..+.|+.||+
T Consensus 2 k~~~~s~~ala~l~sLA~CG 21 (58)
T COG5567 2 KNVFKSLLALATLFSLAGCG 21 (58)
T ss_pred hhHHHHHHHHHHHHHHHhcc
Confidence 35778888888888999997
No 2
>PF15531 Toxin_51: Putative toxin 51
Probab=21.36 E-value=51 Score=26.89 Aligned_cols=39 Identities=23% Similarity=0.205 Sum_probs=31.5
Q ss_pred CCCCCcccccceeehehhcceeechhh---HHHHHHHhccccC
Q 038428 3 NVMPHRKLSTTTIHIMALDGIIHVNSL---FTLGLFLGLTLYP 42 (182)
Q Consensus 3 ~~m~~~~~~~t~ihitALD~iVnvNSL---FT~AVFlGLs~~~ 42 (182)
.||.-..-.++.|||+ |||+-+.+.+ |.-+.+-|=.+++
T Consensus 44 ~V~~Ai~Np~Vri~v~-lDg~~~~~~a~eaf~~~~~~g~~~~~ 85 (128)
T PF15531_consen 44 PVEDAIGNPNVRIHVS-LDGMPGAENADEAFQNAYRRGAGLNG 85 (128)
T ss_pred HHHHhhcCCCcEEEEE-eccccCCccHHHHHHHHHHhccccCC
Confidence 4566667788999985 9999999887 8888999887655
No 3
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=19.98 E-value=1e+02 Score=25.22 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHhhHhcCCcc
Q 038428 75 LFSSLIASALKQAIKIANGNRE 96 (182)
Q Consensus 75 LfSSLVA~~LK~~i~l~~~~~~ 96 (182)
++|-++||.+|..++..++++.
T Consensus 11 ~~a~~~AQ~iK~~~~~~~~r~~ 32 (141)
T PF02681_consen 11 LIAWFIAQFIKVFINYLKERKW 32 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc
Confidence 6788999999999999888765
No 4
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=17.32 E-value=4.1e+02 Score=21.58 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=41.7
Q ss_pred ceeeeee----ehhhHhhHHHHHHHHHHHHhhHhcCCcccccc-cccc--hhhhhhhHHHHHHHHHHhhhhhHHHHH
Q 038428 62 NLVSCHV----YSFSSFLFSSLIASALKQAIKIANGNREYEER-GLSM--TNLRVNLMVLRFGILVSAVGSVFGCGF 131 (182)
Q Consensus 62 ~Lv~FeV----~SFs~FLfSSLVA~~LK~~i~l~~~~~~~e~~-~~~~--~~~~in~~~LR~gmL~sa~GSV~Gc~F 131 (182)
..+..|+ .+++.|.++.+.|.-.=..-+-.|+|+...-. +..+ ..++.+.+..++|...-.+|=+.|.+.
T Consensus 70 ~~l~iHv~~~~~~ya~~~ia~~~al~~l~~~~~Lk~~~~~~~~~~lp~l~~le~~~~~~~~~gf~~lti~l~~G~~w 146 (214)
T PF01578_consen 70 PWLYIHVPLALLGYAAFAIAALAALLYLIQERRLKKKKFSRFYQRLPSLETLERLSYRLILIGFILLTIGLITGAIW 146 (214)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 3555554 67888888887765322222222333321111 1111 335788899999999998998888875
No 5
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=16.49 E-value=1.6e+02 Score=26.89 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=46.3
Q ss_pred CCCchhhhcceeeeeeehhhHhhHHHHHHHHHHHHhhHhcCCcccccccccchhhhhhhHHHHHHHHHHhhhhhHHHHHH
Q 038428 53 CSAGLAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGCGFL 132 (182)
Q Consensus 53 C~a~~~ia~~Lv~FeV~SFs~FLfSSLVA~~LK~~i~l~~~~~~~e~~~~~~~~~~in~~~LR~gmL~sa~GSV~Gc~FL 132 (182)
=.=|-.++-+++.+-.++-+.|+.|++. ++.+.++ .+...|.+.+.+.++-++|..++
T Consensus 51 ~~WGl~I~~y~~~~vglaag~~~is~~~--------~vf~~~~--------------~~~i~r~a~~~a~~~~~~a~~~l 108 (394)
T PRK10881 51 YPWGIWIAFDVLIGTGFACGGWALAWLV--------YVFNRGQ--------------YHPLVRPALLASLFGYSLGGLSI 108 (394)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCccc--------------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677767778888888888888876 3333332 12477889999999999999998
Q ss_pred HHHHHH
Q 038428 133 TMALVN 138 (182)
Q Consensus 133 mlsmvn 138 (182)
+.=|=+
T Consensus 109 ~~DLGr 114 (394)
T PRK10881 109 TIDVGR 114 (394)
T ss_pred HHHccc
Confidence 876643
No 6
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=15.56 E-value=43 Score=24.04 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=23.4
Q ss_pred CCCCchhhhcceeeeeeehhhHhhHHHHHHHH
Q 038428 52 SCSAGLAIAENLVSCHVYSFSSFLFSSLIASA 83 (182)
Q Consensus 52 ~C~a~~~ia~~Lv~FeV~SFs~FLfSSLVA~~ 83 (182)
.|+.+++-..-++.--.+||-||+.++|=-|+
T Consensus 5 rc~~~p~d~~~~lLiliis~~f~lI~~l~qq~ 36 (61)
T PF06692_consen 5 RCDSAPGDYSGPLLILIISFVFFLITSLGQQG 36 (61)
T ss_pred ccCCCCccchhHHHHHHHHHHHHHHhhhccCC
Confidence 47777766666666667899999998875554
No 7
>PF01560 HCV_NS1: Hepatitis C virus non-structural protein E2/NS1; InterPro: IPR002531 The hypervariable region of the E2/NS1 region of Hepatitis C virus varies greatly between viral isolates. E2 is thought to encode a structurally unconstrained envelope protein [].; PDB: 2KZQ_A 4DGV_A 4DGY_A.
Probab=15.47 E-value=27 Score=32.39 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHhhHhcCCcccccccccchhhhhhhHHHH
Q 038428 75 LFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLR 115 (182)
Q Consensus 75 LfSSLVA~~LK~~i~l~~~~~~~e~~~~~~~~~~in~~~LR 115 (182)
=|+||...|=||-|.|.|++.. =||||.+|-
T Consensus 13 gftsLFs~Gp~QnIQLINTNGS----------WHINRTALN 43 (344)
T PF01560_consen 13 GFTSLFSPGPSQNIQLINTNGS----------WHINRTALN 43 (344)
T ss_dssp --------------EEEEETTE----------EEEE-----
T ss_pred hhhhccCCCCCCCCeEeecCcc----------cccCCCCcc
Confidence 4688999999999999998763 378988874
No 8
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=14.64 E-value=2.3e+02 Score=22.60 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhHhcCCcccccccccchhhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 038428 78 SLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGCGFLT 133 (182)
Q Consensus 78 SLVA~~LK~~i~l~~~~~~~e~~~~~~~~~~in~~~LR~gmL~sa~GSV~Gc~FLm 133 (182)
.++++.++-.......|+. + .=|.++..|.+|.+.|.+++-
T Consensus 40 ~~l~~~~d~~~~~~~ak~~-G--------------~s~~~~~ga~iG~IvG~f~~~ 80 (140)
T PF04306_consen 40 ALLGEVLDYLAGAYGAKRF-G--------------ASRWGIWGAIIGGIVGFFVLP 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHhc-C--------------CCHHHHHHHHHHHHHHHHHhh
Confidence 4555666666655444442 1 456778899999999988753
No 9
>COG5056 ARE1 Acyl-CoA cholesterol acyltransferase [Lipid metabolism]
Probab=14.11 E-value=1.7e+02 Score=28.72 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=19.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH
Q 038428 115 RFGILVSAVGSVFGCGFLTMALVNM 139 (182)
Q Consensus 115 R~gmL~sa~GSV~Gc~FLmlsmvnv 139 (182)
|.--++=-+|+++||+|||+...|-
T Consensus 301 rw~yvleK~~~~fg~ifL~vi~~d~ 325 (512)
T COG5056 301 RWRYVLEKACATFGTIFLMVIVADQ 325 (512)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566678999999999988764
No 10
>PRK09953 wcaD putative colanic acid biosynthesis protein; Provisional
Probab=13.18 E-value=1.2e+02 Score=28.48 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=35.4
Q ss_pred hhhhhhHHHHHHH---HHHhhhhhHHHHHHHHHHHHHhhhheeeccc-CCcceeeeecceeeee
Q 038428 106 NLRVNLMVLRFGI---LVSAVGSVFGCGFLTMALVNMVQIKLGVLGC-KSFHTLAAISPLVTLV 165 (182)
Q Consensus 106 ~~~in~~~LR~gm---L~sa~GSV~Gc~FLmlsmvnvVQIKLG~LsC-gs~~a~~A~vpLvvLV 165 (182)
....|+.++|--. +++-.+...|.++ ---++|=|+|.++- ||++-++.+.||+++-
T Consensus 231 fqylnk~Airkk~~~aiv~La~~~V~~V~----a~~Yi~~Rl~~~~T~GSSs~YRiv~PL~mvG 290 (404)
T PRK09953 231 FQYLNKEAIKKKLPLALVSLAVFLVGVVI----AFPYISTRLGDLGTEGSSSYYRIVGPLVMVG 290 (404)
T ss_pred HHhhhHHHHhhCCCceeEeEeeeeEEEEE----echhHHHHHhhccCCCCccceEEEeeeeeec
Confidence 3456777777521 1222222222222 23578999999998 7778899999998763
Done!