Query 038428
Match_columns 182
No_of_seqs 55 out of 57
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 19:00:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kix_A BM2 protein; channel, t 21.3 22 0.00077 21.6 0.2 15 66-80 5-19 (33)
2 2k42_B Espfu; WAsp, GBD, autoi 18.0 56 0.0019 20.5 1.5 11 80-90 7-17 (36)
3 1waz_A MERF; protein structure 13.6 33 0.0011 22.6 -0.4 16 167-182 26-41 (46)
4 2kxc_B ESPF-like protein; IRTK 13.5 80 0.0027 20.9 1.5 11 80-90 5-15 (48)
5 2qts_A Acid-sensing ION channe 7.6 3E+02 0.01 23.4 3.4 25 117-142 403-427 (438)
6 2lif_A Core protein P21; signa 9.7 97 0.0033 18.2 0.0 11 70-80 5-15 (27)
7 1b3t_A Protein (nuclear protei 6.2 1.3E+02 0.0044 23.8 0.3 24 67-90 98-121 (147)
8 2l8s_A Integrin alpha-1; trans 5.9 3.6E+02 0.012 17.9 2.4 26 124-150 14-39 (54)
9 1q90_L Cytochrome B6F complex 5.8 1.9E+02 0.0066 17.4 0.9 11 29-39 16-26 (32)
10 2knc_A Integrin alpha-IIB; tra 5.6 3.9E+02 0.013 17.6 2.4 22 130-151 22-43 (54)
No 1
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=21.33 E-value=22 Score=21.63 Aligned_cols=15 Identities=40% Similarity=0.622 Sum_probs=12.8
Q ss_pred eeeehhhHhhHHHHH
Q 038428 66 CHVYSFSSFLFSSLI 80 (182)
Q Consensus 66 FeV~SFs~FLfSSLV 80 (182)
|+++|-++|.+|.|=
T Consensus 5 ~qilsi~sfilsalh 19 (33)
T 2kix_A 5 FQILSISSFILSALH 19 (33)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 678899999999874
No 2
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=17.96 E-value=56 Score=20.48 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=9.5
Q ss_pred HHHHHHHHhhH
Q 038428 80 IASALKQAIKI 90 (182)
Q Consensus 80 VA~~LK~~i~l 90 (182)
|||+||+++--
T Consensus 7 IAQaLk~HLAa 17 (36)
T 2k42_B 7 VAQRLMQHLAE 17 (36)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 79999999864
No 3
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=13.59 E-value=33 Score=22.59 Aligned_cols=16 Identities=56% Similarity=1.003 Sum_probs=13.0
Q ss_pred hhhHHHhhhhheeecC
Q 038428 167 LALAIYVGLVLYAFSR 182 (182)
Q Consensus 167 ~aL~iyv~~v~Yaf~~ 182 (182)
-||.+|+...+||+.|
T Consensus 26 PaLa~Fi~lt~ya~~r 41 (46)
T 1waz_A 26 PALAIFIGLTIYAIQR 41 (46)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3788999999998764
No 4
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=13.50 E-value=80 Score=20.88 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=9.6
Q ss_pred HHHHHHHHhhH
Q 038428 80 IASALKQAIKI 90 (182)
Q Consensus 80 VA~~LK~~i~l 90 (182)
|||+||+++--
T Consensus 5 iaQaLk~HLAA 15 (48)
T 2kxc_B 5 VAQRLMQHLAE 15 (48)
T ss_pred HHHHHHHHHHH
Confidence 79999999865
No 5
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=7.60 E-value=3e+02 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.486 Sum_probs=18.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhh
Q 038428 117 GILVSAVGSVFGCGFLTMALVNMVQI 142 (182)
Q Consensus 117 gmL~sa~GSV~Gc~FLmlsmvnvVQI 142 (182)
.-|+|-+|.++| .|+=.|++-++||
T Consensus 403 ~~lls~~GG~~G-LflG~S~ls~~Ei 427 (438)
T 2qts_A 403 AGLLGDIGGQMG-LFIGASILTVLEL 427 (438)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHH-HHhcchHHHHHHH
Confidence 457788899987 5666777777775
No 6
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=9.68 E-value=97 Score=18.21 Aligned_cols=11 Identities=45% Similarity=0.667 Sum_probs=7.9
Q ss_pred hhhHhhHHHHH
Q 038428 70 SFSSFLFSSLI 80 (182)
Q Consensus 70 SFs~FLfSSLV 80 (182)
|||.||++-+-
T Consensus 5 sfsiFlLaLls 15 (27)
T 2lif_A 5 PFSIFLLALLS 15 (27)
Confidence 78888877653
No 7
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=6.23 E-value=1.3e+02 Score=23.83 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=19.9
Q ss_pred eeehhhHhhHHHHHHHHHHHHhhH
Q 038428 67 HVYSFSSFLFSSLIASALKQAIKI 90 (182)
Q Consensus 67 eV~SFs~FLfSSLVA~~LK~~i~l 90 (182)
-+.-|-.||=.++.|.++|.||+=
T Consensus 98 ~~~yFlvFlqt~~fAe~~kDAi~D 121 (147)
T 1b3t_A 98 IVCYFMVFLQTHIFAEVLKDAIKD 121 (147)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHH
T ss_pred eeeeeeeeeehhHHHHHHHHHHHH
Confidence 345577799999999999999974
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=5.94 E-value=3.6e+02 Score=17.90 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHhhhheeecccC
Q 038428 124 GSVFGCGFLTMALVNMVQIKLGVLGCK 150 (182)
Q Consensus 124 GSV~Gc~FLmlsmvnvVQIKLG~LsCg 150 (182)
+|+.| +.|+++++-++-.|.|-+...
T Consensus 14 ~svl~-GLLLL~Lii~~LwK~GFFKR~ 39 (54)
T 2l8s_A 14 LSAFA-GLLLLMLLILALWKIGFFKRP 39 (54)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHH-HHHHHHHHHHHHHHcCcccCC
Confidence 34443 567788888888898866554
No 9
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=5.79 E-value=1.9e+02 Score=17.41 Aligned_cols=11 Identities=64% Similarity=1.304 Sum_probs=8.4
Q ss_pred hHHHHHHHhcc
Q 038428 29 LFTLGLFLGLT 39 (182)
Q Consensus 29 LFT~AVFlGLs 39 (182)
-+|.+.|+||.
T Consensus 16 ~~t~~lfiGL~ 26 (32)
T 1q90_L 16 VFTLGIYLGLL 26 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 36778999984
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.63 E-value=3.9e+02 Score=17.65 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhheeecccCC
Q 038428 130 GFLTMALVNMVQIKLGVLGCKS 151 (182)
Q Consensus 130 ~FLmlsmvnvVQIKLG~LsCgs 151 (182)
+.|+++++-++-.|.|=+...-
T Consensus 22 GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 22 GLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHcCcccCCC
Confidence 5677788888888988665543
Done!