Query 038428
Match_columns 182
No_of_seqs 55 out of 57
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 19:00:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038428.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038428hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u9da_ d.80.1.5 (A:) Hypothet 7.9 42 0.0031 24.0 0.2 11 2-12 13-23 (122)
2 d1b3ta_ d.58.8.1 (A:) Epstein 6.2 61 0.0044 23.8 0.3 23 68-90 99-121 (147)
3 d1uspa_ d.227.1.1 (A:) Organic 5.9 1.8E+02 0.013 18.9 2.7 17 118-134 47-63 (137)
4 d1v54l_ f.23.6.1 (L:) Mitochon 5.7 2.6E+02 0.019 16.7 3.1 27 108-134 13-39 (46)
5 d2onfa1 d.227.1.1 (A:1-139) Hy 5.4 2E+02 0.015 18.7 2.7 29 118-148 45-73 (139)
6 d2axtm1 f.23.35.1 (M:1-36) Pho 4.6 1.1E+02 0.0078 17.6 0.6 10 161-170 13-22 (36)
7 d2d7va1 d.227.1.1 (A:7-161) Hy 4.6 2.4E+02 0.017 19.0 2.7 30 118-149 62-91 (155)
8 d1vlaa_ d.227.1.2 (A:) Hypothe 4.4 2.5E+02 0.018 18.3 2.7 19 118-136 47-65 (144)
9 d5easa1 a.102.4.1 (A:24-220) 5 4.1 1.3E+02 0.0091 22.6 0.9 15 131-146 42-56 (197)
10 d1nvpc_ b.56.1.1 (C:) Large ch 3.9 1.2E+02 0.0089 18.3 0.5 9 20-28 25-33 (47)
No 1
>d1u9da_ d.80.1.5 (A:) Hypothetical protein VC0714 {Vibrio cholerae [TaxId: 666]}
Probab=7.86 E-value=42 Score=24.00 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=8.1
Q ss_pred CCCCCCccccc
Q 038428 2 ANVMPHRKLST 12 (182)
Q Consensus 2 ~~~m~~~~~~~ 12 (182)
.|.|||.|-+-
T Consensus 13 ~~~MPhLrfRG 23 (122)
T d1u9da_ 13 SNAMPHLRFRA 23 (122)
T ss_dssp TCCCCEEEEES
T ss_pred CCCCcEEEEcC
Confidence 48899999443
No 2
>d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}
Probab=6.21 E-value=61 Score=23.82 Aligned_cols=23 Identities=43% Similarity=0.518 Sum_probs=19.6
Q ss_pred eehhhHhhHHHHHHHHHHHHhhH
Q 038428 68 VYSFSSFLFSSLIASALKQAIKI 90 (182)
Q Consensus 68 V~SFs~FLfSSLVA~~LK~~i~l 90 (182)
+.-|-.||=.++.|.++|.||+=
T Consensus 99 ~~yFlvFlqt~~fAe~~kDAi~D 121 (147)
T d1b3ta_ 99 VCYFMVFLQTHIFAEVLKDAIKD 121 (147)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHH
T ss_pred eeeeeeeeehhHHHHHHHHHHHH
Confidence 45577799999999999999974
No 3
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=5.90 E-value=1.8e+02 Score=18.86 Aligned_cols=17 Identities=6% Similarity=0.212 Sum_probs=12.7
Q ss_pred HHHHhhhhhHHHHHHHH
Q 038428 118 ILVSAVGSVFGCGFLTM 134 (182)
Q Consensus 118 mL~sa~GSV~Gc~FLml 134 (182)
||++|+||.++-.+.+.
T Consensus 47 lllaAlasC~~~t~~~~ 63 (137)
T d1uspa_ 47 LFAAGYAACFQGALGVV 63 (137)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999888776666554
No 4
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.71 E-value=2.6e+02 Score=16.68 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 038428 108 RVNLMVLRFGILVSAVGSVFGCGFLTM 134 (182)
Q Consensus 108 ~in~~~LR~gmL~sa~GSV~Gc~FLml 134 (182)
.+.+|..=..|...-.||-+|.=|+++
T Consensus 13 sv~Nk~rLla~m~~~fGsgfa~PF~iv 39 (46)
T d1v54l_ 13 SVENKWRLLAMMTLFFGSGFAAPFFIV 39 (46)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhccccchHHHH
Confidence 455566667888889999999999875
No 5
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=5.36 E-value=2e+02 Score=18.75 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=19.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhheeecc
Q 038428 118 ILVSAVGSVFGCGFLTMALVNMVQIKLGVLG 148 (182)
Q Consensus 118 mL~sa~GSV~Gc~FLmlsmvnvVQIKLG~Ls 148 (182)
+|++|+||.++..+.+.+=-. ++++..+.
T Consensus 45 lllaala~C~~~~~~~~a~~~--~i~~~~~~ 73 (139)
T d2onfa1 45 LFPSVLASCLLTTFLEFKDRM--GINLKSWN 73 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCcceEE
Confidence 889999988887777665433 34444443
No 6
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.62 E-value=1.1e+02 Score=17.64 Aligned_cols=10 Identities=40% Similarity=0.597 Sum_probs=5.3
Q ss_pred eeeeehhhhH
Q 038428 161 LVTLVPLALA 170 (182)
Q Consensus 161 LvvLV~~aL~ 170 (182)
|+++||+..+
T Consensus 13 LFilvPt~FL 22 (36)
T d2axtm1 13 LFVLVPSVFL 22 (36)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 7
>d2d7va1 d.227.1.1 (A:7-161) Hypothetical protein VCA0330 {Vibrio cholerae [TaxId: 666]}
Probab=4.58 E-value=2.4e+02 Score=19.04 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=19.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhheeeccc
Q 038428 118 ILVSAVGSVFGCGFLTMALVNMVQIKLGVLGC 149 (182)
Q Consensus 118 mL~sa~GSV~Gc~FLmlsmvnvVQIKLG~LsC 149 (182)
+|++|+||.++--|++++=-. .+++..+.|
T Consensus 62 LllaAlasC~~~t~~~~a~~~--gi~v~~~~v 91 (155)
T d2d7va1 62 AFVAALSSCHMLVFLSIAAKQ--RYLVESYTD 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--TCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCCCceeEE
Confidence 899999988877776665444 334444444
No 8
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=4.45 E-value=2.5e+02 Score=18.26 Aligned_cols=19 Identities=5% Similarity=0.233 Sum_probs=14.3
Q ss_pred HHHHhhhhhHHHHHHHHHH
Q 038428 118 ILVSAVGSVFGCGFLTMAL 136 (182)
Q Consensus 118 mL~sa~GSV~Gc~FLmlsm 136 (182)
+|++|+|+.++..+.+++=
T Consensus 47 lllaala~C~~~~~~~~a~ 65 (144)
T d1vlaa_ 47 LVLTGLMGCTGMDVVSILR 65 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888887776666653
No 9
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=4.11 E-value=1.3e+02 Score=22.59 Aligned_cols=15 Identities=27% Similarity=0.705 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhheee
Q 038428 131 FLTMALVNMVQIKLGV 146 (182)
Q Consensus 131 FLmlsmvnvVQIKLG~ 146 (182)
.=-|.|||.+| |||.
T Consensus 42 ~~~L~lID~Lq-RLGi 56 (197)
T d5easa1 42 ADTLNLIDIIE-RLGI 56 (197)
T ss_dssp HHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHH-HcCc
Confidence 34789999999 8885
No 10
>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.85 E-value=1.2e+02 Score=18.26 Aligned_cols=9 Identities=44% Similarity=0.848 Sum_probs=6.6
Q ss_pred hcceeechh
Q 038428 20 LDGIIHVNS 28 (182)
Q Consensus 20 LD~iVnvNS 28 (182)
=|||.++|.
T Consensus 25 KdGim~ing 33 (47)
T d1nvpc_ 25 KDGIMNLNG 33 (47)
T ss_dssp EEEEEEETT
T ss_pred EeeEEEECC
Confidence 378888873
Done!