BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038429
(258 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/269 (56%), Positives = 192/269 (71%), Gaps = 12/269 (4%)
Query: 1 METLSTPVISIPRHPNPTTLTVNNGHQRHPHFL-------TNQKQLKRIHAQMLSTDFFF 53
M TL P+ S+P NPT LT NN + +P + N+K LK++HA ML T FF
Sbjct: 1 MATLGNPLASVPISSNPTILTANNEQKSNPSTVPILIDKCANKKHLKQLHAHMLRTGLFF 60
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
DP SA+KLFT CALS+ SSL+YA K+FDQIP+PNLYTWNTLIRA++SS +PIQ ++F+Q
Sbjct: 61 DPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQ 120
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG 168
+++ S FPN +T PFVIKAA GQAIHGM F DL ISNSLIHFY+ G
Sbjct: 121 MLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLG 180
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
DL AY VF I +KD+VSWNSMISGFV+GG E+A++L++ M++EN +P+ VTMV VLS
Sbjct: 181 DLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLS 240
Query: 229 ACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
ACAK+ DLEFG W +IE+NGI ++L
Sbjct: 241 ACAKRIDLEFGRWACDYIERNGIDINLIL 269
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 5/163 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
+ AR++FD +P+ ++ WN LI +Y + +P ++ IF +L N PNE TL + A
Sbjct: 315 DAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAA 374
Query: 134 AARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A+ +G IH + + I+ SLI Y+ CG L A VF + ++DV W
Sbjct: 375 CAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVW 434
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++MI+G G AI+L+ +M+ VKP+ VT +L AC+
Sbjct: 435 SAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACS 477
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 122/250 (48%), Gaps = 40/250 (16%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH ++ F D + ++ L S+ L+ A +F +I + ++ +WN++I +
Sbjct: 153 IHGMVMKASFGSDLFISNSLIH--FYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQG 210
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVI 156
P ++ +F ++ + PN T+ V+ A A+ + G+ E + L++
Sbjct: 211 GSPEEALQLFKRMKMENAR-PNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLIL 269
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE-------------- 202
SN+++ Y CG L A +F + +KD+VSW +MI G+ + G ++
Sbjct: 270 SNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDI 329
Query: 203 -----------------KAIELYREMEV-ENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+A+ ++RE+++ +N KP+EVT+ L+ACA+ ++ G W+
Sbjct: 330 TAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHV 389
Query: 245 HIEKNGIKMD 254
+I+K GIK++
Sbjct: 390 YIKKQGIKLN 399
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 303 bits (776), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 156/269 (57%), Positives = 194/269 (72%), Gaps = 13/269 (4%)
Query: 1 METLSTPVISIPRHPNPTTLTVNNGHQRHPHF--------LTNQKQLKRIHAQMLSTDFF 52
M +L++P++SIP PN + LTV NG H TN K LK +HA +L + F
Sbjct: 1 MASLNSPLVSIPLRPNHSILTVPNGRPVTSHSQTLSLIDQCTNLKHLKELHATILRSGLF 60
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F PY+ASKLF+ ALS+FSSL+YARK+F++I QPNLYTWNTLIRA++SS EPI S +IF+
Sbjct: 61 FHPYNASKLFSVAALSSFSSLDYARKVFEEISQPNLYTWNTLIRAFASSPEPIHSLLIFI 120
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVC 167
+++Y+SP FPN+FT PFVIKAAA QAIHGM DL I NSLIH YA C
Sbjct: 121 RMLYDSPDFPNKFTFPFVIKAAAGVASLPFSQAIHGMAIKASLGSDLFILNSLIHCYASC 180
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
GDL AY VFV I +KDVVSWNSMI GFV GG +KA+EL++ M+ ENV+P++VTMV VL
Sbjct: 181 GDLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVL 240
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
SACAKK DLEFG V +IE+NGI ++LT
Sbjct: 241 SACAKKMDLEFGRRVCHYIERNGINVNLT 269
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 21/231 (9%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFF-----FDPYSASKLFTPC 65
I R+ LTV+N + + +R+ +M D F D Y+ + F
Sbjct: 259 IERNGINVNLTVSNAMLDMYVKNGSLEDARRLFDKMEEKDIFSWTTMIDGYAKRRDF--- 315
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+ AR +FD +P+ ++ WN LI AY +P ++ IF +L + P+E
Sbjct: 316 --------DAARSVFDAMPRQDISAWNVLISAYEQDGKPKEALAIFHELQLSKTAKPDEV 367
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMI 180
TL + A A+ +G IH + + ++ SLI Y+ CG++ A +F +
Sbjct: 368 TLVSTLSACAQLGAIDIGGWIHVYIKKQDIKLNCHLTTSLIDMYSKCGEVEKALDIFYSV 427
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++DV W++MI+G G AI+L+ EM+ V+P+ VT +L AC+
Sbjct: 428 DRRDVFVWSAMIAGLAMHGRGRAAIDLFFEMQETKVRPNAVTFTNLLCACS 478
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 109/224 (48%), Gaps = 38/224 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
++ L+ A +F +I + ++ +WN++I+ + P ++ +F QL+ PN+ T+
Sbjct: 178 ASCGDLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKALELF-QLMKAENVRPNDVTM 236
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A+ + G+ + E + L +SN+++ Y G L A +F + +
Sbjct: 237 VGVLSACAKKMDLEFGRRVCHYIERNGINVNLTVSNAMLDMYVKNGSLEDARRLFDKMEE 296
Query: 183 KDVVSWNSMISGFV-------------------------------EGGFFEKAIELYREM 211
KD+ SW +MI G+ + G ++A+ ++ E+
Sbjct: 297 KDIFSWTTMIDGYAKRRDFDAARSVFDAMPRQDISAWNVLISAYEQDGKPKEALAIFHEL 356
Query: 212 EV-ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++ + KPDEVT+V LSACA+ ++ G W+ +I+K IK++
Sbjct: 357 QLSKTAKPDEVTLVSTLSACAQLGAIDIGGWIHVYIKKQDIKLN 400
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 296 bits (757), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 157/267 (58%), Positives = 186/267 (69%), Gaps = 13/267 (4%)
Query: 1 METLSTPVISIPRHPNPTTLTVNNGHQRHPHFLT-----NQKQLKRIHAQMLSTDFFFDP 55
ME LS P IS+ N +TL N + H T + KQLK +HA+ML T FFDP
Sbjct: 1 MEALSVPSISLQ---NFSTLNNNLLFRNHQILSTIDKCSSSKQLKEVHARMLRTGLFFDP 57
Query: 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
+SASKLFT ALS+FS+L+YAR +FDQIPQPNLYTWNTLIRAY+SS +P QSF+IFL L+
Sbjct: 58 FSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLL 117
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDL 170
PN+FT PFVIKAA+ RVG A+HGM F DL I NSL+ FY CGDL
Sbjct: 118 DKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDL 177
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+MA +F I KDVVSWNSMIS F +G E A+EL+ +ME ENV P+ VTMV VLSAC
Sbjct: 178 SMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSAC 237
Query: 231 AKKRDLEFGIWVSSHIEKNGIKMDLTF 257
AKK DLEFG WV S+IE+ GIK+DLT
Sbjct: 238 AKKLDLEFGRWVCSYIERKGIKVDLTL 264
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 5/163 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
+ AR +F+ +P + WN LI AY + +P ++ IF +L + P+E TL + A
Sbjct: 310 DAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSA 369
Query: 134 AARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A+ +G IH + + ++ N SL+ YA CG L A VF + ++DV W
Sbjct: 370 CAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVW 429
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++MI+G G + AI+L+ EM+ VKP+ VT VL AC+
Sbjct: 430 SAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACS 472
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 116/253 (45%), Gaps = 46/253 (18%)
Query: 42 IHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+H + F D Y S + + C L A ++F I ++ +WN++I A+
Sbjct: 148 VHGMAIKLSFGMDLYILNSLVRFYGACG-----DLSMAERLFKGISCKDVVSWNSMISAF 202
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----D 153
+ + P + +FL++ + PN T+ V+ A A+ + G+ + E D
Sbjct: 203 AQGNCPEDALELFLKMEREN-VMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVD 261
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE----------- 202
L + N+++ Y CG + A +F + ++DV SW M+ G+ + G ++
Sbjct: 262 LTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPV 321
Query: 203 --------------------KAIELYREMEVENV-KPDEVTMVVVLSACAKKRDLEFGIW 241
+A+ ++ E+++ + KPDEVT+V LSACA+ ++ G W
Sbjct: 322 KEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGW 381
Query: 242 VSSHIEKNGIKMD 254
+ +I++ GI ++
Sbjct: 382 IHVYIKREGIVLN 394
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SLE A ++F + + ++Y W+ +I + +F ++ + PN T V
Sbjct: 409 GSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEM-QEAKVKPNSVTFTNV 467
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + G+ ++ V + + Y V ++ C+ ++G+
Sbjct: 468 LCACSHA----------GLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGR-------- 509
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
GF E+A+EL EM + P +L AC+ ++E G S + K
Sbjct: 510 -------AGFLEEAMELINEM---STTPSASVWGALLGACSLHMNVELGELASDQLLK 557
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/267 (55%), Positives = 190/267 (71%), Gaps = 17/267 (6%)
Query: 8 VISIPRH-----PNPTTLTVNNGH--QRHPHF-----LTNQKQLKRIHAQMLSTDFFFDP 55
++S+PR PNP ++T+NN HP + KQLK+IHAQML T FFDP
Sbjct: 8 LVSLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDP 67
Query: 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
+SAS+L T ALS F SL+YA+++FDQIP PNLYTWNTLIRAY+SS P QS +IFL+++
Sbjct: 68 FSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRML 127
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDL 170
+ SP FP++FT PF+IKAA+ + G+A HGM D+ I NSLIHFYA CG+L
Sbjct: 128 HQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGEL 187
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+ Y VFV I ++DVVSWNSMI+ FV+GG E+A+EL++EME +NVKP+ +TMV VLSAC
Sbjct: 188 GLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSAC 247
Query: 231 AKKRDLEFGIWVSSHIEKNGIKMDLTF 257
AKK D EFG WV S+IE+N I LT
Sbjct: 248 AKKSDFEFGRWVHSYIERNRIGESLTL 274
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 38/221 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L ++F IP+ ++ +WN++I A+ P ++ +F Q + PN T+ V
Sbjct: 185 GELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELF-QEMETQNVKPNGITMVGV 243
Query: 131 IKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A+ F G+ +H E + L +SN+++ Y CG + A +F + +KD+
Sbjct: 244 LSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDI 303
Query: 186 VSWNSMISGFVEGGFFE-------------------------------KAIELYREMEV- 213
VSW +M+ G+ + G ++ +A+EL+ E+++
Sbjct: 304 VSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLS 363
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ KPDEVT+V LSACA+ ++ G W+ +I+K G+K++
Sbjct: 364 KTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLN 404
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
+ A+ +FD +P ++ WN LI AY +P ++ +F +L + P+E TL + A
Sbjct: 320 DAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSA 379
Query: 134 AARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A+ +G IH GM + + ++ SLI Y CGDL A VF + +KDV
Sbjct: 380 CAQLGAMDLGGWIHVYIKKQGM-KLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFV 438
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
W++MI+G G + AI L+ +M+ + VKP+ VT +L AC+ +E G
Sbjct: 439 WSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEG 490
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 149/267 (55%), Positives = 191/267 (71%), Gaps = 17/267 (6%)
Query: 8 VISIPRH-----PNPTTLTVNNGH--QRHPHF-LTNQ----KQLKRIHAQMLSTDFFFDP 55
++S+PR PNP ++T+NN HP L +Q KQLK+IHAQML T FFDP
Sbjct: 8 LVSLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDP 67
Query: 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
+SAS+L T ALS F SL+YA+++FDQIP PNLYTWNTLIRAY+SS P QS +IFL+++
Sbjct: 68 FSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRML 127
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDL 170
+ SP FP++FT PF+IKAA+ + G+A HGM D+ I NSLIHFYA CG+L
Sbjct: 128 HQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGEL 187
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+ Y VFV ++DVVSWNSMI+ FV+GG E+A+EL++EME +NVKP+ +TMV VLSAC
Sbjct: 188 GLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSAC 247
Query: 231 AKKRDLEFGIWVSSHIEKNGIKMDLTF 257
AKK D EFG WV S+IE+N I LT
Sbjct: 248 AKKSDFEFGRWVHSYIERNRIXESLTL 274
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 18/186 (9%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L ++F P+ ++ +WN++I A+ P ++ +F Q + PN T+ V
Sbjct: 185 GELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELF-QEMETQNVKPNGITMVGV 243
Query: 131 IKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A+ F G+ +H E + L +SN+++ Y CG + A +F + +KD+
Sbjct: 244 LSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDI 303
Query: 186 VSWNSMISGFVEGGFFE------------KAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VSW +M+ G+ + G ++ AI L+ +M+ + VKP+ VT +L AC+
Sbjct: 304 VSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHV 363
Query: 234 RDLEFG 239
+E G
Sbjct: 364 GLVEEG 369
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/262 (53%), Positives = 182/262 (69%), Gaps = 13/262 (4%)
Query: 9 ISIPRHPN---PTTLTVNNGHQRHPHFLTNQ----KQLKRIHAQMLSTDFFFDPYSASKL 61
+S+PRHPN P T NN RH L ++ +QLK+ HA M+ T F DPYSASKL
Sbjct: 10 LSLPRHPNFSNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKL 69
Query: 62 FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN-SPY 120
F ALS+F+SLEYARK+FD+IPQPN +TWNTLIRAY+S +P+ S FL +V + S
Sbjct: 70 FAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQC 129
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
+PN++T PF+IKAAA +GQ++HGM D+ ++NSLIH Y CGDL A
Sbjct: 130 YPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACK 189
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF I +KDVVSWNSMI+GFV+ G +KA+EL+++ME E+VK VTMV VLSACAK RD
Sbjct: 190 VFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRD 249
Query: 236 LEFGIWVSSHIEKNGIKMDLTF 257
LEFG V S+IE+N + ++LT
Sbjct: 250 LEFGRRVCSYIEENRVNVNLTL 271
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 91/163 (55%), Gaps = 5/163 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E AR++ + +P+ ++ WN LI AY + +P ++ ++F +L N+ TL + A
Sbjct: 317 EAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSA 376
Query: 134 AARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A+ +G+ IH + + + ++++LIH Y+ CGDL A VF + K+DV W
Sbjct: 377 CAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVW 436
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++MI G G +A++++ +M+ NVKP+ VT V AC+
Sbjct: 437 SAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACS 479
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 121/252 (48%), Gaps = 40/252 (15%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +H + + D + A+ L C S L+ A K+F I + ++ +WN++I +
Sbjct: 153 QSLHGMAIKSAVGSDVFVANSLIH-CYFSC-GDLDSACKVFTTIKEKDVVSWNSMINGFV 210
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----L 154
P ++ +F ++ + + T+ V+ A A+ G+ + E++ L
Sbjct: 211 QKGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNL 269
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS--------------------------- 187
++N+++ Y CG + A +F + +KD V+
Sbjct: 270 TLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKK 329
Query: 188 ----WNSMISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWV 242
WN++IS + + G +A+ ++ E++++ N+K +++T+V LSACA+ LE G W+
Sbjct: 330 DIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWI 389
Query: 243 SSHIEKNGIKMD 254
S+I+KNGIKM+
Sbjct: 390 HSYIKKNGIKMN 401
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/260 (52%), Positives = 178/260 (68%), Gaps = 11/260 (4%)
Query: 9 ISIPRHPN---PTTLTVNNGHQRHPHFL---TNQKQLKRIHAQMLSTDFFFDPYSASKLF 62
+S+PRHPN P T NN RH + + +QLK+ H M+ T F DPYSASKLF
Sbjct: 10 LSLPRHPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLF 69
Query: 63 TPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP 122
ALS+F+SLEYARK+FD+IP+PN + WNTLIRAY+S +P+ S FL +V S +P
Sbjct: 70 AMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYP 129
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
N++T PF+IKAAA +GQ++HGM D+ ++NSLIH Y CGDL A VF
Sbjct: 130 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
I +KDVVSWNSMI+GFV+ G +KA+EL+++ME E+VK VTMV VLSACAK R+LE
Sbjct: 190 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE 249
Query: 238 FGIWVSSHIEKNGIKMDLTF 257
FG V S+IE+N + ++LT
Sbjct: 250 FGRQVCSYIEENRVNVNLTL 269
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 5/163 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E AR++ + +PQ ++ WN LI AY + +P ++ ++F +L N+ TL + A
Sbjct: 315 EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSA 374
Query: 134 AARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A+ +G+ IH + + ++++LIH Y+ CGDL + VF + K+DV W
Sbjct: 375 CAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVW 434
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++MI G G +A++++ +M+ NVKP+ VT V AC+
Sbjct: 435 SAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACS 477
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 119/252 (47%), Gaps = 40/252 (15%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +H + + D + A+ L C S L+ A K+F I + ++ +WN++I +
Sbjct: 151 QSLHGMAVKSAVGSDVFVANSLIH-CYFSC-GDLDSACKVFTTIKEKDVVSWNSMINGFV 208
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----L 154
P ++ +F ++ + + T+ V+ A A+ G+ + E++ L
Sbjct: 209 QKGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNL 267
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE-------- 206
++N+++ Y CG + A +F + +KD V+W +M+ G+ +E A E
Sbjct: 268 TLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQK 327
Query: 207 -----------------------LYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWV 242
++ E++++ N+K +++T+V LSACA+ LE G W+
Sbjct: 328 DIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWI 387
Query: 243 SSHIEKNGIKMD 254
S+I+K+GI+M+
Sbjct: 388 HSYIKKHGIRMN 399
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 134/257 (52%), Positives = 183/257 (71%), Gaps = 10/257 (3%)
Query: 10 SIPRH--PNPTTLTVNN-GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCA 66
SI +H P P + T N G + T+ KQLK+IHAQML T+ DPY+AS+LFT A
Sbjct: 123 SIVQHSSPTPASATATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAA 182
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
S+FS+L+YARK+FDQIPQPNLY+WN LIRA ++S +PIQS ++F++++++SP+ PN+FT
Sbjct: 183 FSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFT 242
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI- 180
P +IKA A F VG+A+HGM F DD+ + NSLIHFYA CG L +AY VF MI
Sbjct: 243 FPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIE 302
Query: 181 -GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
KD+VSWNSM++GFV+GG+ +KA++L+ M E V P+ VTMV V+SACAK +L G
Sbjct: 303 GNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLG 362
Query: 240 IWVSSHIEKNGIKMDLT 256
V +I++N + M+L
Sbjct: 363 RKVCDYIDRNEMMMNLN 379
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 6/162 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL-VYNSPYFPNEFTLPFVIKAA 134
AR +FD +P+ ++ WN LI Y S P ++ IF +L + S P++ TL + A
Sbjct: 428 ARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSAC 487
Query: 135 ARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A+ +G+ IHG + + + ++ SLI Y+ GD+ A VF IG KDV W+
Sbjct: 488 AQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWS 547
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+MI+G G E AIEL+ +M+ VKP+ VT +L AC+
Sbjct: 548 AMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACS 589
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 120/258 (46%), Gaps = 49/258 (18%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPN--LYTWNTL 94
K +H + T F D + + L + C L+ A +F+ I N + +WN++
Sbjct: 260 KAVHGMAIKTSFGDDVFVLNSLIHFYASCG-----HLDLAYLVFEMIEGNNKDIVSWNSM 314
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD- 153
+ + P ++ +F + + N PN T+ V+ A A+ + +G+ + + +
Sbjct: 315 VTGFVQGGYPDKALDLF-ERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNE 373
Query: 154 ----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW--------------------- 188
L + N+ I + CG++ +A +F + K+DVVSW
Sbjct: 374 MMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFD 433
Query: 189 ----------NSMISGFVEGGFFEKAIELYREMEV--ENVKPDEVTMVVVLSACAKKRDL 236
N +ISG+ + G ++A+ ++RE+++ +PD+VT++ LSACA+ +
Sbjct: 434 SMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAM 493
Query: 237 EFGIWVSSHIEKNGIKMD 254
+ G W+ +I+K I+++
Sbjct: 494 DIGEWIHGYIKKERIQLN 511
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 122/222 (54%), Positives = 158/222 (71%), Gaps = 5/222 (2%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
TN QLK+IHA ML T F DPY+ASKL T A+S+ S L YA+ +F+QIPQPNLY WNT
Sbjct: 83 TNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNT 142
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
LIR Y+SS +P QSF+IFL ++++ FPN+FT PF+ KAA+R +G +HGM
Sbjct: 143 LIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKA 202
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
DL I NSLI+FY G +A+ VF + KDVVSWN+MI+ F GG +KA+ L+
Sbjct: 203 SLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLF 262
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+EME+++VKP+ +TMV VLSACAKK DLEFG W+ S+IE NG
Sbjct: 263 QEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNG 304
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 124/266 (46%), Gaps = 42/266 (15%)
Query: 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQ 85
P +LK +H + +S LF +L F + + A ++F +P
Sbjct: 177 PFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPG 236
Query: 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
++ +WN +I A++ P ++ ++F ++ PN T+ V+ A A+ + G+
Sbjct: 237 KDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVK-PNVITMVSVLSACAKKIDLEFGRW 295
Query: 146 IHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
I E++ L+++N+++ Y CG + A +F + +KD+VSW +M+ G + G
Sbjct: 296 ICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGN 355
Query: 201 FEK-------------------------------AIELYREMEV-ENVKPDEVTMVVVLS 228
+++ A+ L+ EM++ ++ KPDEVT++ L
Sbjct: 356 YDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALC 415
Query: 229 ACAKKRDLEFGIWVSSHIEKNGIKMD 254
A A+ ++FG W+ +I+K+ I ++
Sbjct: 416 ASAQLGAIDFGHWIHVYIKKHDINLN 441
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ + + A +FD +P WN LI AY + +P + +F ++ + P+E TL
Sbjct: 351 AKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTL 410
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A+A+ G IH + + ++ SL+ YA CG+L A VF + +
Sbjct: 411 ICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVER 470
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
KDV W++MI G + A++L+ M +KP+ VT +L AC
Sbjct: 471 KDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCAC 518
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 124/245 (50%), Positives = 165/245 (67%), Gaps = 17/245 (6%)
Query: 8 VISIPRH-----PNPTTLTVNNGH--QRHPHF-----LTNQKQLKRIHAQMLSTDFFFDP 55
++S+PR PNP ++T+NN HP + KQLK+IHAQML T FFDP
Sbjct: 8 LVSLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDP 67
Query: 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
+SAS+L T ALS F SL+YA+++FDQIP PNLYTWNTLIRAY+SS P QS +IFL+++
Sbjct: 68 FSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRML 127
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDL 170
+ SP FP++FT PF+IKAA+ + G+A HGM D+ I NSLIHFYA CG+L
Sbjct: 128 HQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGEL 187
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+ Y VFV I ++DVVSWNSMI+ FV+GG E+A+EL++EME +N M+ + + C
Sbjct: 188 GLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNSLTLSNAMLDMYTKC 247
Query: 231 AKKRD 235
D
Sbjct: 248 GSVED 252
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
+ A+ +FD +P ++ WN LI AY +P ++ +F +L + P+E TL +K
Sbjct: 282 DAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLKQGMKL 341
Query: 134 AARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
++ SLI Y CGDL A VF + +KDV W++MI+
Sbjct: 342 NCH-------------------LTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIA 382
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G G + AI L+ +M+ + VKP+ VT +L AC+ +E G
Sbjct: 383 GLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEG 428
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L ++F IP+ ++ +WN++I A+ P ++ +F ++ + + L
Sbjct: 185 GELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNSLTLSNAMLDMY 244
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
K + R+ M E D+V +++ YA G+ A +F + +D+ +WN+
Sbjct: 245 TKCGSVEDAKRL---FDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNA 301
Query: 191 MISGFVEGGFFEKAIELYREMEV-ENVKPDEVTM 223
+IS + + G ++A+EL+ E+++ + KPDEVT+
Sbjct: 302 LISAYEQCGKPKEALELFHELQLSKTAKPDEVTL 335
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 140/235 (59%), Gaps = 14/235 (5%)
Query: 27 QRHPHFLTNQK-----QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFD 81
Q HP L+ +K QLK+IHAQML T F DP+SASK+ CAL SL YAR +F+
Sbjct: 39 QLHPCLLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFN 98
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
QIP P +T N++IR Y++ + P Q+ ++F QL+ P+ FT P + K+ +
Sbjct: 99 QIPNPTTFTCNSIIRGYTNKNLPRQA-ILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE-- 155
Query: 142 VGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
G+ +H F D I N+L++ Y+ CG L A VF + K VVSW +MI +
Sbjct: 156 -GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 214
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ +AI+L+R ME+ +VKP+E+T+V VL+ACA+ RDLE V +I++ GI
Sbjct: 215 QWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGI 269
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 8/223 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H F D Y + L S L ARK+FD++ ++ +W T+I AY+
Sbjct: 157 KQLHCHSTKLGFASDAYIQNTLMN--MYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 214
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----L 154
D P ++ +F ++ S PNE TL V+ A AR + +H ++
Sbjct: 215 QWDLPHEAIKLFRRMEIAS-VKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHT 273
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V++++L+ Y CG +A +F + +K++ WN MI+G VE +E+A+ L+ EM++
Sbjct: 274 VLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 333
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
VK D+VTM +L AC LE G W+ +IEK I++D+
Sbjct: 334 GVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVAL 376
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 98/183 (53%), Gaps = 7/183 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +F+++P+ NL+ WN +I + + ++ +F ++ S ++ T+ ++ A
Sbjct: 292 ARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQL-SGVKGDKVTMASLLIACT 350
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ +H E D+ + +L+ YA CG + A VF + +KDV++W +
Sbjct: 351 HLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTA 410
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI-WVSSHIEKN 249
+I G G KA+EL+ EM++ VKPD +T V VL+AC+ + GI + +S K
Sbjct: 411 LIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKY 470
Query: 250 GIK 252
GI+
Sbjct: 471 GIQ 473
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+E A ++F ++P+ ++ TW LI + + +++ +F ++ S P+ T V
Sbjct: 388 GSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQM-SEVKPDAITFVGV 446
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + G+ + + NS+ + Y + + C+ M+G+
Sbjct: 447 LAACSHA----------GLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGR-------- 488
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
G +A +L + M + PD +V +LSAC
Sbjct: 489 -------AGRIAEAEDLIQNMP---MAPDYFVLVGLLSAC 518
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 134/221 (60%), Gaps = 5/221 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+I +QM+ T D +++S+L CA+S + L+Y + PN ++WN IR
Sbjct: 21 QLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRG 80
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
+ S+ P ++ +++ +++ P+ +T P + KA AR R+G I G F+
Sbjct: 81 FLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDS 140
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ +SN++IH CGDL A +F +D+VSWNSMI+G+V G+ +A+ YREM+
Sbjct: 141 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMK 200
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
VE +KPDEVTM+ V+S+CA+ DL+ G +IE+NG+K+
Sbjct: 201 VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKL 241
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 37/227 (16%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
L + L+ ARKMFD+ +L +WN++I Y ++ + ++ P+E T
Sbjct: 152 LVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIK-PDEVT 210
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLA---------- 171
+ V+ + A+ +G+ H E++ + ++N+L+ Y CG+L
Sbjct: 211 MIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMT 270
Query: 172 ---------------------MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
MA+ +F + KDVV WN+MI G+V ++A+ L+ E
Sbjct: 271 NKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNE 330
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M+ N+ PDEVTMV LSAC++ L+ GIW+ +IEK+ + +++
Sbjct: 331 MQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVAL 377
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 6/172 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ A K+FD++P ++ WN +I Y ++ ++ +F ++ + P+E T+ +
Sbjct: 290 LDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN-INPDEVTMVSCLS 348
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A ++ VG IH E ++ + +LI YA CG + A VF + ++ ++
Sbjct: 349 ACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLT 408
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
W ++ISG G AI + EM +V PDEVT + +LSAC +E G
Sbjct: 409 WTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEG 460
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 132 KAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD--VVSWN 189
K+ ++ Q + + G+ ED S+ LI F A+ + YC ++ ++ SWN
Sbjct: 17 KSISQLKQIQSQMVLTGLIEDGFA-SSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWN 75
Query: 190 SMISGFVEGGFFEKAIELY-REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
I GF++ +A+ LY R ++ + KPD T ++ ACA+ + G + H+
Sbjct: 76 VAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLH 135
Query: 249 NGIKMDL 255
G D+
Sbjct: 136 LGFDSDI 142
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 135/224 (60%), Gaps = 6/224 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK +HAQ++ + + KL + CA+ L+YA++MFDQIPQPN + +N+LIR
Sbjct: 2 RGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIR 61
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
YS+SD+PI + ++F +++ S PNEFTLPFV+KA + +HG+
Sbjct: 62 GYSNSDDPIDAVLLFRRMIC-SGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + N+LI Y VCG + A +F I K +VSWNSMI G+ G +++A L+R+M
Sbjct: 121 SLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKM 180
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++PD T V +LS C++ RDL+ G +V IE G+K+D+
Sbjct: 181 REWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDI 224
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + S+E AR++FDQ+P N+ +WN++I Y + ++ +F ++ NS P+E
Sbjct: 264 AYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKM-RNSRVVPDEA 322
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMI 180
TL ++ A ++ +G+ IH + + + NSLI YA CG + A +F+ +
Sbjct: 323 TLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEM 382
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
K++VSWN +I G +AI+L+ EM+ + PDE+T+ +LSAC+ ++ G+
Sbjct: 383 PGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGL 442
Query: 241 W 241
+
Sbjct: 443 Y 443
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 42/225 (18%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++ C L + ARK+FD I L +WN++I Y+ ++F++F ++
Sbjct: 132 VYVVCGL-----IHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKM-REWGM 185
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYC 175
P+ FT ++ ++ +G+ +H E D+++ N+L+ YA CG+L A
Sbjct: 186 EPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQA 245
Query: 176 VFVMIGKKDVVSW-------------------------------NSMISGFVEGGFFEKA 204
+F +K+VVSW NSMIS ++ G + +A
Sbjct: 246 IFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREA 305
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
++L+ +M V PDE T+V +L+AC++ DL G + ++I N
Sbjct: 306 LDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSN 350
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 131/219 (59%), Gaps = 6/219 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+LKR+H M++T D S+L CA S +L YA+ +F+QI +P+LY WN++I+
Sbjct: 20 ELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKG 79
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS S+ P ++ ++ ++ Y P+ FT PFV+KA + + +GQ +H FE
Sbjct: 80 YSISESPDEALTMYREM-RQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEV 138
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + +L+ YA CGD+ A VF I K +VV+W S+I+G + +A+ +Y++ME
Sbjct: 139 DVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDME 198
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ +V P+E+TMV VL ACA+ RDL G WV + G+
Sbjct: 199 LWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGL 237
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 15/225 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ T F D Y+A+ L A +E A K+FD IP+ N+ W +LI S+
Sbjct: 127 VHNCIVKTGFEVDVYAATALLQMYA--ACGDMEAALKVFDDIPKWNVVAWTSLIAGCISN 184
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH---GMFEDD----- 153
D P ++ ++ + S PNE T+ V+ A AR G+ +H G D
Sbjct: 185 DCPSEAVRVYKDMELWS-VAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSN 243
Query: 154 ----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
++++ +++ YA CG L A +F + +++V+WNSMI + + G +A++L+
Sbjct: 244 SNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFS 303
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+M + PD+ T + V+ ACA L G + +++ K + D
Sbjct: 304 DMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDD 348
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SL+ AR +F+++P NL WN++I AY+ + ++ +F + + + P++ T V
Sbjct: 262 GSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRI-AGFDPDKATFLCV 320
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I A A GQA+H DD I +L+ YA GD A VF + KKDV
Sbjct: 321 IGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDV 380
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFG 239
+W S+I G G E+A+ +++M+ + + PDE+T + VLSAC+ +E G
Sbjct: 381 TAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDG 435
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 153 DLVISNSLIHF--YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D++ + L+ F Y+ G+L A VF I + + WNSMI G+ ++A+ +YRE
Sbjct: 36 DVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYRE 95
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M + PD T VL AC+ G V + I K G ++D+
Sbjct: 96 MRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDV 140
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 131/219 (59%), Gaps = 6/219 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+LKR+H M++T D S+L CA S +L YA+ +F+QI +P+LY WN++I+
Sbjct: 20 ELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKG 79
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS S+ P ++ ++ ++ Y P+ FT PFV+KA + + +GQ +H FE
Sbjct: 80 YSISESPDEALTMYREM-RQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEV 138
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + +L+ YA CGD+ A VF I K +VV+W S+I+G + +A+ +Y++ME
Sbjct: 139 DVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDME 198
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ +V P+E+TMV VL ACA+ RDL G WV + G+
Sbjct: 199 LWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGL 237
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCV 176
P++ T VI A A GQA+H DD I +L+ YA GD A V
Sbjct: 286 PDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQV 345
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRD 235
F + KKDV +W S+I G G E+A+ +++M+ + + PDE+T + VLSAC+
Sbjct: 346 FSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGK 405
Query: 236 LEFG 239
+E G
Sbjct: 406 VEDG 409
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 25/217 (11%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ T F D Y+A+ L + +E A K+FD IP+ N+ W +LI S+
Sbjct: 127 VHNCIVKTGFEVDVYAATALLQ--MYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISN 184
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH---GMFEDDLVISN 158
D P ++ ++ + S PNE T+ V+ A AR G+ +H G D SN
Sbjct: 185 DCPSEAVRVYKDMELWS-VAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSN 243
Query: 159 SLIHFYAVCGDLAM-AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
S + + M A C + G+ + +A++L+ +M +
Sbjct: 244 SNFNVILATAIVDMYAKCAYNQYGQAN------------------EALDLFSDMRIAGFD 285
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
PD+ T + V+ ACA L G + +++ K + D
Sbjct: 286 PDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDD 322
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 153 DLVISNSLIHF--YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D++ + L+ F Y+ G+L A VF I + + WNSMI G+ ++A+ +YRE
Sbjct: 36 DVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYRE 95
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M + PD T VL AC+ G V + I K G ++D+
Sbjct: 96 MRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDV 140
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 127/213 (59%), Gaps = 5/213 (2%)
Query: 46 MLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI 105
M+ T D +++S+L CA+S + L+Y + PN ++WN IR + S+ P
Sbjct: 1 MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 60
Query: 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSL 160
++ +++ +++ P+ +T P + KA AR R+G I G F+ D+ +SN++
Sbjct: 61 EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 120
Query: 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220
IH CGDL A +F +D+VSWNSMI+G+V G+ +A+ YREM+VE +KPDE
Sbjct: 121 IHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDE 180
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
VTM+ V+S+CA+ DL+ G +IE+NG+K+
Sbjct: 181 VTMIGVVSSCAQLEDLDLGRESHCYIEENGLKL 213
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 110/212 (51%), Gaps = 22/212 (10%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
L + L+ ARKMFD+ +L +WN++I Y ++ + ++ P+E T
Sbjct: 124 LVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIK-PDEVT 182
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVF-VMI 180
+ V+ + A+ +G+ H E++ + ++N+L+ Y CG+L A +F M
Sbjct: 183 MIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMT 242
Query: 181 GK---------------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
K KDVV WN+MI G+V ++A+ L+ EM+ N+ PDEVTMV
Sbjct: 243 NKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVS 302
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
LSAC++ L+ GIW+ +IEK+ + +++
Sbjct: 303 CLSACSQLGALDVGIWIHHYIEKHELSLNVAL 334
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 8/188 (4%)
Query: 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
SA KLF +++ + + + +FD++P ++ WN +I Y ++ ++ +F ++
Sbjct: 233 SARKLFD--SMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQA 290
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLA 171
+ P+E T+ + A ++ VG IH E ++ + +LI YA CG +
Sbjct: 291 MN-INPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKIT 349
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A VF + ++ ++W ++ISG G AI + EM +V PDEVT + +LSAC
Sbjct: 350 KAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACC 409
Query: 232 KKRDLEFG 239
+E G
Sbjct: 410 HGGLVEEG 417
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD--VVSWNSMISGFVEGGFFEKAI 205
G+ ED S+ LI F A+ + YC ++ ++ SWN I GF++ +A+
Sbjct: 5 GLIEDGFA-SSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAV 63
Query: 206 ELY-REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
LY R ++ + KPD T ++ ACA+ + G + H+ G D+
Sbjct: 64 VLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDI 114
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 143/259 (55%), Gaps = 41/259 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N +LK+IH Q+L + S+L T A FS+L YAR +FD+I PN WNT
Sbjct: 22 SNIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNT 81
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAA------ARPVQFRVGQAI 146
+IRAYS+S++P ++ +++ Q++++S P+ N +T PF++KA A Q V Q I
Sbjct: 82 MIRAYSNSNDPEEALLLYHQMLHHSIPH--NAYTFPFLLKACSALSALAETHQIHV-QII 138
Query: 147 HGMFEDDLVISNSLIHFYAV-------------------------------CGDLAMAYC 175
F ++ +NSL+ YA+ CG++ MAY
Sbjct: 139 KRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYK 198
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F + +K+V+SW SMI GFV G ++A+ L ++M V +KPD++T+ LSACA
Sbjct: 199 IFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGA 258
Query: 236 LEFGIWVSSHIEKNGIKMD 254
LE G W+ ++I KN IK+D
Sbjct: 259 LEQGKWIHTYIGKNKIKID 277
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 37/242 (15%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+ + +IH Q++ F + Y+ + L A+S S++ A +FD +P ++ +WN
Sbjct: 124 LSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAIS--GSIKSAHVLFDLLPSRDIVSWN 181
Query: 93 TLIRAYSSSDEPIQSFMIF------------------------------LQLVYNSPYFP 122
T+I Y ++ IF LQ + + P
Sbjct: 182 TMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKP 241
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVF 177
++ TL + A A G+ IH + D V+ +LI Y CG++ A VF
Sbjct: 242 DKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVF 301
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ KK V +W ++I GF G +A++ + +M+ +KP T VL+AC+ +E
Sbjct: 302 SKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVE 361
Query: 238 FG 239
G
Sbjct: 362 EG 363
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 6/226 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+IH+Q + T P +K+F+ C F + YAR++FD IP+P ++ WNT+++
Sbjct: 3 QLKQIHSQTIKTGTICKPIIQNKIFSFCCTQEFGDMNYARQLFDTIPEPTVFHWNTMLKG 62
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS D P ++L ++ N P+ +T PF+IK + + F G+ +H
Sbjct: 63 YSRIDSPKLGVSMYLDMLKND-VLPDCYTYPFLIKGFKKDIAFEYGKELHCHVVKYGLGS 121
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++ + N+LI+ Y++CG MA +F M K DVV+WN+MIS + ++K L+ EME
Sbjct: 122 NVFVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEME 181
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ V P VT+V VLSAC+K +DLE G V +I + ++ +L E
Sbjct: 182 KKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVE 227
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 41/237 (17%)
Query: 58 ASKLFTPCALSTFSSL----EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
S +F AL SL + AR +FD + ++ TWN +I AY+ + ++ +F +
Sbjct: 120 GSNVFVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHE 179
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCG 168
+ P+ TL V+ A ++ GQ +H D +L++ N+LI YA CG
Sbjct: 180 M-EKKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACG 238
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGG----------------------------- 199
++++A +F + +DV+SW ++++GF G
Sbjct: 239 EMSVALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQ 298
Query: 200 --FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
F++A+ L+ EM+ NVKPDE TMV +L+ACA+ LE G WV ++I+KN +K D
Sbjct: 299 VNCFKEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKND 355
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 90/171 (52%), Gaps = 6/171 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+ L+ ARK FDQ+P+ + +W +I Y + ++ ++F ++ S P+EF
Sbjct: 264 GFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLFHEM-QTSNVKPDEF 322
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ ++ A A+ +G+ + + +D + N+LI Y CG++ A +F +
Sbjct: 323 TMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSM 382
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ D +W +MI G G+ E+A++++ +M +V PDE+T V VL AC
Sbjct: 383 PRPDKFTWTAMIVGLAINGYGEEALDMFVQMLKASVTPDEITYVGVLCACT 433
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 143/285 (50%), Gaps = 47/285 (16%)
Query: 7 PVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCA 66
P + HP+ T L+ Q LK+IH+Q++ T ++ SKL CA
Sbjct: 26 PYKLLQNHPSLTLLSTCKSFQ----------NLKQIHSQIIKTGLHNTQFALSKLIEFCA 75
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
+S F +L YA +F+ I QPN + WNT+IR S S P+ + +++++ PN +T
Sbjct: 76 ISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLL-CGVEPNSYT 134
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM-- 179
PF++K+ A+ + G+ IHG E D + SLI+ YA G+L A VF
Sbjct: 135 FPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSS 194
Query: 180 -----------------------------IGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
I +D VSWN+MI+G+ + G FE+A+ ++E
Sbjct: 195 LRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQE 254
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M+ NV P+E TMV VLSACA+ LE G WV S IE +G+ +L
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNL 299
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 8/200 (4%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D S + L T L L+ AR++F++IP + +WN +I Y+ S + + F Q
Sbjct: 197 DAVSFTALITGYTLR--GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGR-FEEALAFFQ 253
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCG 168
+ + PNE T+ V+ A A+ +G + ED +L + N+LI Y+ CG
Sbjct: 254 EMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCG 313
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
DL A +F I +KD++SWN MI G+ +++A+ L+R+M+ NV+P++VT V +L
Sbjct: 314 DLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILP 373
Query: 229 ACAKKRDLEFGIWVSSHIEK 248
ACA L+ G W+ ++I+K
Sbjct: 374 ACAYLGALDLGKWIHAYIDK 393
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S L+ AR +F+ I + ++ +WN +I YS + ++ +F ++ S PN+ T
Sbjct: 310 SKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKM-QQSNVEPNDVTF 368
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDD-LVISN-----SLIHFYAVCGDLAMAYCVFVMIG 181
++ A A +G+ IH + L ++N SLI YA CG++ A VF +
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
K + SWN+MISG G A+EL+R+M E +PD++T V VLSAC+ +E G
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELG 486
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 29/176 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++E A+++F + +L +WN +I + + +F Q+ + + P++ T V
Sbjct: 415 GNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQM-RDEGFEPDDITFVGV 473
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + +G+ +D IS L H+ C+ ++G+
Sbjct: 474 LSACSHAGLVELGRQCFSSMVEDYDISPKLQHYG----------CMIDLLGR-------- 515
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G F++A L + ME+ KPD +L AC ++E G + + H+
Sbjct: 516 -------AGLFDEAEALMKNMEM---KPDGAIWGSLLGACRVHGNVELGEFAAKHL 561
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 144/289 (49%), Gaps = 47/289 (16%)
Query: 3 TLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLF 62
T P + HP+ T L+ Q LK+IH+Q++ T ++ SKL
Sbjct: 22 TSDPPYKLLQNHPSLTLLSTCKSFQ----------NLKQIHSQIIKTGLHNTQFALSKLI 71
Query: 63 TPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP 122
CA+S F +L YA +F+ I QPN + WNT+IR S S P+ + +++++ P
Sbjct: 72 EFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLL-CGVEP 130
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
N +T PF++K+ A+ + G+ IHG E D + SLI+ YA G+L A VF
Sbjct: 131 NSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVF 190
Query: 178 VM-------------------------------IGKKDVVSWNSMISGFVEGGFFEKAIE 206
I +D VSWN+MI+G+ + G FE+A+
Sbjct: 191 SKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALA 250
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++EM+ NV P+E TMV VLSACA+ LE G WV S IE +G+ +L
Sbjct: 251 FFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNL 299
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 8/200 (4%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D S + L T L L+ AR++F++IP + +WN +I Y+ S + + F Q
Sbjct: 197 DAVSFTALITGYTLR--GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGR-FEEALAFFQ 253
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCG 168
+ + PNE T+ V+ A A+ +G + ED +L + N+LI Y+ CG
Sbjct: 254 EMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCG 313
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
DL A +F I +KD++SWN MI G+ +++A+ L+R+M+ NV+P++VT V +L
Sbjct: 314 DLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILP 373
Query: 229 ACAKKRDLEFGIWVSSHIEK 248
ACA L+ G W+ ++I+K
Sbjct: 374 ACAYLGALDLGKWIHAYIDK 393
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S L+ AR +F+ I + ++ +WN +I YS + ++ +F ++ S PN+ T
Sbjct: 310 SKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKM-QQSNVEPNDVTF 368
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDD-LVISN-----SLIHFYAVCGDLAMAYCVFVMIG 181
++ A A +G+ IH + L ++N SLI YA CG++ A VF +
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
K + SWN+MISG G A+EL+R+M E +PD++T V VLSAC+ +E G
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELG 486
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 29/176 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++E A+++F + +L +WN +I + + +F Q+ + + P++ T V
Sbjct: 415 GNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQM-RDEGFEPDDITFVGV 473
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + +G+ +D IS L H+ C+ ++G+
Sbjct: 474 LSACSHAGLVELGRQCFSSMVEDYDISPKLQHYG----------CMIDLLGR-------- 515
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G F++A L + ME+ KPD +L AC ++E G + + H+
Sbjct: 516 -------AGLFDEAEALMKNMEM---KPDGAIWGSLLGACRVHGNVELGEFAAKHL 561
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 134/231 (58%), Gaps = 8/231 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYS--ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
+ + L++IHA++L+ S K+ CALS + ++YARK+F QI +PN+++WN
Sbjct: 69 SMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWN 128
Query: 93 TLIRAYSSSDEPIQS-FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG--- 148
++IR S S P + ++F ++V PN FT+ FV+KA + GQ +H
Sbjct: 129 SMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVL 188
Query: 149 --MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F + +L++FYA C D+ +A VF I +++V+W++MISG+ G +A+
Sbjct: 189 KSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALG 248
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
L+R+M+ V PDEVTMV V+SACA L+ G WV ++I K I+ DL
Sbjct: 249 LFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLEL 299
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTF 70
+PNP T T+ + ++ ++ +++HA +L + F P+ + L + C
Sbjct: 156 YPNPNTFTMAF-VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKC----- 209
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+ A K+FD+I NL W+T+I Y+ ++ +F + + P+E T+ V
Sbjct: 210 EDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDM-QKAGVVPDEVTMVSV 268
Query: 131 IKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I A A G+ +H + E DL +S +L++ YA CG + A VF + KD
Sbjct: 269 ISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDT 328
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+W+SMI G G E A+E + ME VKP+ VT + VLSACA
Sbjct: 329 KAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACA 374
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 133/229 (58%), Gaps = 8/229 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYS--ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
+ L++IHA++L+ S K+ CALS + ++YARK+F QI +PN+++WN++
Sbjct: 2 RVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSM 61
Query: 95 IRAYSSSDEPIQS-FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG----- 148
IR S S P + ++F ++V PN FT+ FV+KA + GQ +H
Sbjct: 62 IRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKS 121
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F + +L++FYA C D+ +A VF I +++V+W++MISG+ G +A+ L+
Sbjct: 122 GFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLF 181
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
R+M+ V PDEVTMV V+SACA L+ G WV ++I K I+ DL
Sbjct: 182 RDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLEL 230
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTF 70
+PNP T T+ + ++ ++ +++HA +L + F P+ + L + C
Sbjct: 87 YPNPNTFTMAF-VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKC----- 140
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+ A K+FD+I NL W+T+I Y+ ++ +F + + P+E T+ V
Sbjct: 141 EDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDM-QKAGVVPDEVTMVSV 199
Query: 131 IKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I A A G+ +H + E DL +S +L++ YA CG + A VF + KD
Sbjct: 200 ISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDT 259
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+W+SMI G G E A+E + ME VKP+ VT + VLSACA
Sbjct: 260 KAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACA 305
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 136/258 (52%), Gaps = 39/258 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N ++L++IH QML T D ASKL CA SL YAR +FD+I +PN + WNT
Sbjct: 29 SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNT 88
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-- 150
+IR YS+S EP ++ +++ ++Y+S P+ N +T PF++KA + Q IH
Sbjct: 89 MIRGYSNSKEPEEALLLYHHMLYHSVPH--NAYTFPFLLKACSSMSALEETQQIHAHIIK 146
Query: 151 ----------------------------------EDDLVISNSLIHFYAVCGDLAMAYCV 176
+ D V NS+I Y CG++ MAY +
Sbjct: 147 MGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEI 206
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + +++++SW SMISG V G ++A+ L+ M+ +K D V +V L ACA L
Sbjct: 207 FNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVL 266
Query: 237 EFGIWVSSHIEKNGIKMD 254
+ G W+ ++I+K+ I++D
Sbjct: 267 DQGKWIHAYIKKHEIEID 284
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 11/175 (6%)
Query: 62 FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
+T C +E A ++F+ +P+ N+ +W ++I + +P ++ +F ++
Sbjct: 194 YTKCG-----EIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKL 248
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCV 176
N L ++A A G+ IH E D ++ LI YA CGDL A V
Sbjct: 249 DN-VALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEV 307
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F + +K V W +MISG+ G +A+E + +M+ V+P+++T +L+AC+
Sbjct: 308 FRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACS 362
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 136/258 (52%), Gaps = 39/258 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N ++L++IH QML T D ASKL CA SL YAR +FD+I +PN + WNT
Sbjct: 29 SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNT 88
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-- 150
+IR YS+S EP ++ +++ ++Y+S P+ N +T PF++KA + Q IH
Sbjct: 89 MIRGYSNSKEPEEALLLYHHMLYHSVPH--NAYTFPFLLKACSSMSASEETQQIHAHIIK 146
Query: 151 ----------------------------------EDDLVISNSLIHFYAVCGDLAMAYCV 176
+ D V NS+I Y CG++ MAY +
Sbjct: 147 MGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEI 206
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + +++++SW SMISG V G ++A+ L+ M+ +K D V +V L ACA L
Sbjct: 207 FNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVL 266
Query: 237 EFGIWVSSHIEKNGIKMD 254
+ G W+ ++I+K+ I++D
Sbjct: 267 DQGKWIHAYIKKHEIEID 284
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 39/235 (16%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
++ ++ ++IHA ++ F + Y+ + L S ++ AR +FDQ+ Q + +WN
Sbjct: 131 MSASEETQQIHAHIIKMGFGSEIYTTNSLLN--VYSKSGDIKSARLLFDQVDQRDTVSWN 188
Query: 93 TLIRAYSSSDE-------------------------------PIQSFMIFLQLVYNSPYF 121
++I Y+ E P ++ +F ++
Sbjct: 189 SMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKL 248
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCV 176
N L ++A A G+ IH E D ++ LI YA CGDL A V
Sbjct: 249 DN-VALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEV 307
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F + +K V W +MISG+ G +A+E + +M+ V+P+++T +L+AC+
Sbjct: 308 FRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACS 362
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 132/230 (57%), Gaps = 14/230 (6%)
Query: 37 KQLKRIHAQMLSTDFFFD--PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
+ L+++HA +L+ ++ SK+ CALS F ++ YAR +F QIP PN+++WN+L
Sbjct: 2 RVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSL 61
Query: 95 IRAYSS----SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
I+ YS S EPI +F +L PN FTL FV+KA A F G +H
Sbjct: 62 IKGYSQIHTLSKEPI---FLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHV 118
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
F L + SL++FY C ++ A VF + +++V+W +MISG G ++A+
Sbjct: 119 LKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAM 178
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EL+REM+ ++PD +T+V V+SACA L+ G W+ ++IEK + DL
Sbjct: 179 ELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDL 228
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 29/235 (12%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIR 96
++H+ +L F S LF +L F + +ARK+F+++P NL W +I
Sbjct: 113 QVHSHVLKDGF------GSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMIS 166
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---- 152
++ ++ +F ++ + P+ TL V+ A A +G +H E
Sbjct: 167 GHARVGAVDEAMELFREM-QKAGIQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVL 225
Query: 153 -DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL +S +L+ YA CG + A VFV + KD +W+SMI GF G + AI+ +++M
Sbjct: 226 TDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 285
Query: 212 EVENVKPDEVTMVVVLSACA------KKRD-----LEFGIWVSSHIEKNGIKMDL 255
V PD VT + VLSACA + R LEFGI S +E G K+DL
Sbjct: 286 LETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPS--VEHYGCKVDL 338
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 147/288 (51%), Gaps = 38/288 (13%)
Query: 4 LSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFT 63
LS +++P P+ +L+ N + + ++LK+IHA ++ T D +AS++
Sbjct: 6 LSFSGVTVPAMPSSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLA 65
Query: 64 PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-P 122
C S S + YA +F +I N + WNT+IR +S S P + IF+ ++ +SP P
Sbjct: 66 FCCASP-SDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKP 124
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
T P V KA R Q R G+ +HGM EDD I N+++H Y CG L A+ +F
Sbjct: 125 QRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIF 184
Query: 178 VMIGKKDVVSWN-------------------------------SMISGFVEGGFFEKAIE 206
+ + DVV+WN SMISGFV G F+ A++
Sbjct: 185 LGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALD 244
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++REM+ ++VKPD TMV +L+ACA E G W+ +I +N +++
Sbjct: 245 MFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELN 292
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 62 FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
F C L ++ A+ +FD++PQ N +WN++I + + + +F ++
Sbjct: 202 FAKCGL-----IDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREM-QEKDVK 255
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ FT+ ++ A A G+ IH FE + ++ +LI Y CG + V
Sbjct: 256 PDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNV 315
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F KK + WNSMI G GF E+A++L+ E+E ++PD V+ + VL+ACA
Sbjct: 316 FECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACA 370
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 137/228 (60%), Gaps = 10/228 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASK--LFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
+++ +LK+IHA + + K +FT +LS + + YA +F I PN++TW
Sbjct: 29 SSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLS--APMSYAYNVFTVIHNPNVFTW 86
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
NT+IR Y+ SD P +F+ + Q+V S P+ T PF++KA ++ + R G+AIH +
Sbjct: 87 NTIIRGYAESDNPSPAFLFYRQMVV-SCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTI 145
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
FE + + NSL+H YA CGD AY VF ++ ++D+V+WNSMI+GF G +A+
Sbjct: 146 RNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALT 205
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
L+REM VE V+PD T+V +LSA A+ LE G V ++ K G+ +
Sbjct: 206 LFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKN 253
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 111/214 (51%), Gaps = 16/214 (7%)
Query: 35 NQKQLKRIHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
N ++ + IH+ + F F S ++ C E A K+F+ + + +L W
Sbjct: 133 NVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACG-----DTESAYKVFELMKERDLVAW 187
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH---- 147
N++I ++ + P ++ +F ++ P+ FT+ ++ A+A +G+ +H
Sbjct: 188 NSMINGFALNGRPNEALTLFREMSVEGVE-PDGFTVVSLLSASAELGALELGRRVHVYLL 246
Query: 148 --GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
G+ ++ V +NSL+ YA CG + A VF + +++ VSW S+I G GF E+A+
Sbjct: 247 KVGLSKNSHV-TNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEAL 305
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
EL++EME + + P E+T V VL AC+ L+ G
Sbjct: 306 ELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEG 339
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 141/269 (52%), Gaps = 51/269 (18%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK++HAQM+ T DP +A++L A+S L+YARK+F + +PN +++NTLIR
Sbjct: 2 QDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIR 61
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------- 149
A S S++P + ++F+++V + PN FT P V KA R + R G+ +HG+
Sbjct: 62 ALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLD 121
Query: 150 ------------------FED--------------------------DLVISNSLIHFYA 165
ED D+V+ N +I Y
Sbjct: 122 SDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYV 181
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
G+L +A +F + ++ VVSWN MI+G+ + G F++A+E++REM++ V P+ VT+V
Sbjct: 182 RIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVS 241
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
VL A ++ LE G WV + +N I +D
Sbjct: 242 VLPAMSRLGALELGKWVHLYAVRNNIGVD 270
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 98/183 (53%), Gaps = 8/183 (4%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
LE AR +FD++PQ ++ +WN +I Y+ S ++ +F ++ + PN TL
Sbjct: 183 IGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQM-AEVPPNYVTLVS 241
Query: 130 VIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V+ A +R +G+ +H + DD V+ ++LI YA CG + A VF + K+
Sbjct: 242 VLPAMSRLGALELGKWVHLYAVRNNIGVDD-VLGSALIDMYAKCGSIEKALQVFEGLPKR 300
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+VV+W+++I+G G + ++ + +ME V P +VT + +LSAC+ + G W
Sbjct: 301 NVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFF 360
Query: 244 SHI 246
H+
Sbjct: 361 DHM 363
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 132/230 (57%), Gaps = 14/230 (6%)
Query: 37 KQLKRIHAQMLSTDFFFD--PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
+ L+++HA +L+ ++ SK+ CALS F ++ YAR +F QIP PN+++WN+L
Sbjct: 2 RVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSL 61
Query: 95 IRAYSS----SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
I+ YS S EPI +F +L PN FTL FV+KA A F G +H
Sbjct: 62 IKGYSQIHTLSKEPI---FLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHV 118
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
F L + SL++FY C ++ A VF + +++V+W +MISG G ++A+
Sbjct: 119 LKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAM 178
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EL+REM+ ++PD +T+V V+SACA L+ G W+ ++IEK + DL
Sbjct: 179 ELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDL 228
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 29/235 (12%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIR 96
++H+ +L F S LF +L F + +ARK+F+++P NL W +I
Sbjct: 113 QVHSHVLKDGF------GSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMIS 166
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---- 152
++ ++ +F ++ + P+ TL V+ A A +G +H E
Sbjct: 167 GHARVGAVDEAMELFREM-QKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVL 225
Query: 153 -DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL +S +L+ YA CG + A VFV + KD +W+SMI GF G + AI+ +++M
Sbjct: 226 TDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 285
Query: 212 EVENVKPDEVTMVVVLSACA------KKRD-----LEFGIWVSSHIEKNGIKMDL 255
V PD VT + VLSACA + R LEFGI S +E G K+DL
Sbjct: 286 LETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPS--VEHYGCKVDL 338
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 139/271 (51%), Gaps = 43/271 (15%)
Query: 27 QRHP-----HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMF 80
+ HP H + L+ IHA+M+ T Y+ SKL LS F L YA +F
Sbjct: 1 RNHPSLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVF 60
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
D I +PNL WNT+ R ++ S +P+ + +++ ++ + PN +T PF++KA A+ F
Sbjct: 61 DSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMI-SLGLVPNSYTFPFLLKACAKSKAF 119
Query: 141 RVGQAIH-------------------------GMFED-----------DLVISNSLIHFY 164
R GQ IH G ED D+V +LI Y
Sbjct: 120 REGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGY 179
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
A G + A +F I KDVVSWN++ISG+ E G +++A+EL++EM NVKPDE TMV
Sbjct: 180 ASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMV 239
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
VLSACA+ +E G V S I+ +G +L
Sbjct: 240 TVLSACAQSASIELGRQVHSWIDDHGFGSNL 270
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+KMFD+IP ++ +WN LI Y+ + ++ +F +++ + P+E T+ V+ A A
Sbjct: 188 AQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMM-KTNVKPDESTMVTVLSACA 246
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ +G+ +H +D +L I N+LI Y CG++ A +F + KDV+SWN+
Sbjct: 247 QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNT 306
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+I G+ +++A+ L++EM P+EVTM+ +L ACA ++ G W+ +I+K
Sbjct: 307 LIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDK 364
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L+ C +E A +F+ + ++ +WNTLI Y+ + ++ ++F +++ S
Sbjct: 279 LYIKCG-----EVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML-RSGE 332
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-ISN------SLIHFYAVCGDLAMA 173
PNE T+ ++ A A +G+ IH + L +SN SLI YA CGD+ A
Sbjct: 333 SPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAA 392
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF + + + SWN+MI GF G A +++ M + ++PD++T V +LSAC+
Sbjct: 393 QQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHS 452
Query: 234 RDLEFG 239
L+ G
Sbjct: 453 GMLDLG 458
>gi|449460654|ref|XP_004148060.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 471
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 143/263 (54%), Gaps = 16/263 (6%)
Query: 10 SIPRHPNPTTLTV-----NNGHQRHPHFL---TNQKQLKRIHAQMLSTDFFFDPYSASKL 61
S+P HP+ T ++ HQ L ++ ++LK +HA+++ + KL
Sbjct: 23 SVPTHPSANNSTSPLDFKSSVHQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKL 82
Query: 62 FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
+ C++S L YA +FD +PQPN + +N LIR YS+S PI + +++Q++ S +
Sbjct: 83 ISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIRGYSTSPHPINAIFLYVQMM-RSGFL 141
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYC 175
PN FTLPFV+K+ A + + +H GM + + N+LI+ YAV G + AY
Sbjct: 142 PNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGMLSH-VYVHNALINAYAVFGFVQCAYQ 200
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + + +VSWNSMI G+ G + A L+REM +PD+ T+V +LS C+K
Sbjct: 201 VFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFREMRETGFQPDKFTLVHLLSICSKSCR 260
Query: 236 LEFGIWVSSHIEKNGIKMDLTFE 258
L+ G V ++E GI+ DL
Sbjct: 261 LDIGKSVHHYVEITGIEFDLILR 283
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 119/222 (53%), Gaps = 9/222 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H Q + Y + L A + F ++ A ++FD++ L +WN++I Y +
Sbjct: 166 VHCQAIRLGMLSHVYVHNALIN--AYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRN 223
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVI 156
+F++F ++ + + P++FTL ++ ++ + +G+++H E DL++
Sbjct: 224 GLCKGAFLLFREM-RETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLIL 282
Query: 157 SNSLIHF-YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
N+L+ Y+ G + A +F I +K+V+SWNSMI +V+ G ++A+ L+++M
Sbjct: 283 RNALLDIAYSKHGLIRHAREIFDQIPEKNVISWNSMILCYVQDGQCKEALLLFQQMCETT 342
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ PDE T+V VLSAC++ DL G I ++ I + +T
Sbjct: 343 IIPDETTLVSVLSACSQIGDLAMGEKTHGCICRHSIVITVTL 384
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 7/196 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +H + T FD + L A S + +AR++FDQIP+ N+ +WN++I Y
Sbjct: 265 KSVHHYVEITGIEFDLILRNALLDI-AYSKHGLIRHAREIFDQIPEKNVISWNSMILCYV 323
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDLVIS- 157
+ ++ ++F Q+ + P+E TL V+ A ++ +G+ HG + +VI+
Sbjct: 324 QDGQCKEALLLFQQMC-ETTIIPDETTLVSVLSACSQIGDLAMGEKTHGCICRHSIVITV 382
Query: 158 ---NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
NSL+ Y CG L F K++VSWN +I G A++L+ M
Sbjct: 383 TLLNSLVDMYVKCGALETVLDFFFEFKDKNLVSWNIVIQALALHGHGLDALKLFNMMHTT 442
Query: 215 NVKPDEVTMVVVLSAC 230
+ PD+ T + +LSAC
Sbjct: 443 GIWPDKFTFMGLLSAC 458
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 141/269 (52%), Gaps = 51/269 (18%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK++HAQM+ T DP +A++L A+S L+YARK+F + +PN +++NTLIR
Sbjct: 25 QDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIR 84
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------- 149
A S S++P + ++F+++V + PN FT P V KA R + R G+ +HG+
Sbjct: 85 ALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLD 144
Query: 150 ------------------FED--------------------------DLVISNSLIHFYA 165
ED D+V+ N +I Y
Sbjct: 145 SDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYV 204
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
G+L +A +F + ++ VVSWN MI+G+ + G F++A+E++REM++ V P+ VT+V
Sbjct: 205 RIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVS 264
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
VL A ++ LE G WV + +N I +D
Sbjct: 265 VLPAMSRLGALELGKWVHLYAVRNNIGVD 293
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 98/183 (53%), Gaps = 8/183 (4%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
LE AR +FD++PQ ++ +WN +I Y+ S ++ +F ++ + PN TL
Sbjct: 206 IGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQM-AEVPPNYVTLVS 264
Query: 130 VIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V+ A +R +G+ +H + DD V+ ++LI YA CG + A VF + K+
Sbjct: 265 VLPAMSRLGALELGKWVHLYAVRNNIGVDD-VLGSALIDMYAKCGSIEKALQVFEGLPKR 323
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+VV+W+++I+G G + ++ + +ME V P +VT + +LSAC+ + G W
Sbjct: 324 NVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFF 383
Query: 244 SHI 246
H+
Sbjct: 384 DHM 386
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 140/271 (51%), Gaps = 43/271 (15%)
Query: 27 QRHP-----HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMF 80
+ HP H + L+ IHAQM+ T Y+ SKL C LS F L YA +F
Sbjct: 1 RNHPSLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVF 60
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
+ I +PNL WNT+ R ++ S +P+ + +++ ++ + PN +T PF++K+ A+ F
Sbjct: 61 ETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMI-SLGLLPNCYTFPFLLKSCAKSKAF 119
Query: 141 RVGQAIH-------------------------GMFED-----------DLVISNSLIHFY 164
R GQ IH G ED D+V +LI Y
Sbjct: 120 REGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGY 179
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
A G +A A +F I KDVVSWN+MISG+ E G ++A+EL++EM NV+PDE TMV
Sbjct: 180 ASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMV 239
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V+SACA+ +E G V S I+ +G +L
Sbjct: 240 SVVSACAQSASIELGRQVHSWIDDHGFGSNL 270
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 125/244 (51%), Gaps = 21/244 (8%)
Query: 25 GHQRHPHFLTNQKQLK-RIHAQMLS----------TDFFFDPYSASKLFTPCALST-FSS 72
G Q H H L L +H ++S FD S + + AL T ++S
Sbjct: 122 GQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYAS 181
Query: 73 LEY---ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
Y A+KMFD+IP ++ +WN +I Y+ + ++ +F +++ + P+E T+
Sbjct: 182 KGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM-KTNVRPDESTMVS 240
Query: 130 VIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A A+ +G+ +H +D +L I N+LI Y CG++ A +F + KD
Sbjct: 241 VVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKD 300
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
V+SWN++I G+ +++A+ L++EM P++VTM+ +L ACA +E G W+
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 360
Query: 245 HIEK 248
+I K
Sbjct: 361 YINK 364
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L+ C +E A +F+ + ++ +WNTLI Y+ + ++ ++F +++ S
Sbjct: 279 LYIKCG-----EVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML-RSGE 332
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-ISN------SLIHFYAVCGDLAMA 173
PN+ T+ ++ A A +G+ IH L ++N SLI YA CGD+ A
Sbjct: 333 SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 392
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF I + + SWN+MI GF G A +++ M ++PD++T V +LSAC+
Sbjct: 393 QQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 452
Query: 234 RDLEFG 239
L+ G
Sbjct: 453 GMLDLG 458
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 129/226 (57%), Gaps = 6/226 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QL+++H Q + +P +++ T C + +YAR++FD+IP+PNL+ WNT+IR
Sbjct: 54 QLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRG 113
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS D P ++L+++ P+ +T PF+ K R + G+ +HG +
Sbjct: 114 YSRLDFPQLGVSLYLEMLRRGVK-PDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQY 172
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++ + +L+ Y +CG L A VF + K DV++WN +IS + + G FE++ L+ ME
Sbjct: 173 NVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVME 232
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ V P VT+V+VLSAC+K +DL G V S+++ ++ +L E
Sbjct: 233 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLE 278
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 39/252 (15%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H +L ++ + + L L L+ AR +FD P+ ++ TWN +I AY+
Sbjct: 159 RQLHGHVLKHGLQYNVFVHTALVQMYLLC--GQLDTARGVFDVCPKADVITWNMIISAYN 216
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDL 154
+ +S +FL ++ + P TL V+ A ++ R G+ +H E +L
Sbjct: 217 KVGKFEESRRLFL-VMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNL 275
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG--------------- 199
V+ N++I YA CG++ A +F + +D++SW +++SGF G
Sbjct: 276 VLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEK 335
Query: 200 ----------------FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
F++A+EL+R M+ NVKPDE TMV VL+ACA LE G W+
Sbjct: 336 DYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIR 395
Query: 244 SHIEKNGIKMDL 255
++I++N IK DL
Sbjct: 396 TYIDRNKIKNDL 407
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 6/170 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+ ++ AR FD++P+ + +W +I Y S+ ++ +F + + P+EF
Sbjct: 315 GFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK-PDEF 373
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ V+ A A +G+ I ++DL + N+LI Y CGD+ A +F +
Sbjct: 374 TMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREM 433
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
++D +W +MI G G EKA++++ M ++ PDE+T + VLSAC
Sbjct: 434 SQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSAC 483
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 129/226 (57%), Gaps = 6/226 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QL+++H Q + +P +++ T C + +YAR++FD+IP+PNL+ WNT+IR
Sbjct: 33 QLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRG 92
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS D P ++L+++ P+ +T PF+ K R + G+ +HG +
Sbjct: 93 YSRLDFPQLGVSLYLEMLRRGVK-PDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQY 151
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++ + +L+ Y +CG L A VF + K DV++WN +IS + + G FE++ L+ ME
Sbjct: 152 NVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVME 211
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ V P VT+V+VLSAC+K +DL G V S+++ ++ +L E
Sbjct: 212 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLE 257
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 39/252 (15%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H +L ++ + + L L L+ AR +FD P+ ++ TWN +I AY+
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLC--GQLDTARGVFDVCPKADVITWNMIISAYN 195
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDL 154
+ +S +FL ++ + P TL V+ A ++ R G+ +H E +L
Sbjct: 196 KVGKFEESRRLFL-VMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNL 254
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG--------------- 199
V+ N++I YA CG++ A +F + +D++SW +++SGF G
Sbjct: 255 VLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEK 314
Query: 200 ----------------FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
F++A+EL+R M+ NVKPDE TMV VL+ACA LE G W+
Sbjct: 315 DYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIR 374
Query: 244 SHIEKNGIKMDL 255
++I++N IK DL
Sbjct: 375 TYIDRNKIKNDL 386
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 6/170 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+ ++ AR FD++P+ + +W +I Y S+ ++ +F + + P+EF
Sbjct: 294 GFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK-PDEF 352
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ V+ A A +G+ I ++DL + N+LI Y CGD+ A +F +
Sbjct: 353 TMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREM 412
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
++D +W +MI G G EKA++++ M ++ PDE+T + VLSAC
Sbjct: 413 SQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSAC 462
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 135/254 (53%), Gaps = 38/254 (14%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
L+ IHAQM+ T Y+ SKL C LS F L YA +F+ I +PNL WNT+ R
Sbjct: 3 LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH---------- 147
++ S +P+ + +++ ++ + PN +T PF++K+ A+ FR GQ IH
Sbjct: 63 HALSSDPVSALYLYVCMI-SLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121
Query: 148 ---------------GMFED-----------DLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
G ED D+V +LI YA G +A A +F I
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIP 181
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
KDVVSWN+MISG+ E G ++A+EL++EM NV+PDE TMV V+SACA+ +E G
Sbjct: 182 IKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ 241
Query: 242 VSSHIEKNGIKMDL 255
V S I+ +G +L
Sbjct: 242 VHSWIDDHGFGSNL 255
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 125/244 (51%), Gaps = 21/244 (8%)
Query: 25 GHQRHPHFLTNQKQLK-RIHAQMLS----------TDFFFDPYSASKLFTPCALST-FSS 72
G Q H H L L +H ++S FD S + + AL T ++S
Sbjct: 107 GQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYAS 166
Query: 73 LEY---ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
Y A+KMFD+IP ++ +WN +I Y+ + ++ +F +++ + P+E T+
Sbjct: 167 KGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM-KTNVRPDESTMVS 225
Query: 130 VIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A A+ +G+ +H +D +L I N+LI Y CG++ A +F + KD
Sbjct: 226 VVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKD 285
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
V+SWN++I G+ +++A+ L++EM P++VTM+ +L ACA +E G W+
Sbjct: 286 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 345
Query: 245 HIEK 248
+I K
Sbjct: 346 YINK 349
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L+ C +E A +F+ + ++ +WNTLI Y+ + ++ ++F +++ S
Sbjct: 264 LYIKCG-----EVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML-RSGE 317
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-ISN------SLIHFYAVCGDLAMA 173
PN+ T+ ++ A A +G+ IH L ++N SLI YA CGD+ A
Sbjct: 318 SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 377
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF I + + SWN+MI GF G A +++ M ++PD++T V +LSAC+
Sbjct: 378 QQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 437
Query: 234 RDLEFG 239
L+ G
Sbjct: 438 GMLDLG 443
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 131/220 (59%), Gaps = 5/220 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+I AQM+ST + ++AS+L CALS L+Y ++ +I + N+++WN IR
Sbjct: 72 QLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRG 131
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y S + FM++ +++ P+ T P ++K +G + G FE
Sbjct: 132 YVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFEC 191
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N+ I CG+L++AY VF +D+V+WNSMI+G V+ G +AI++Y+EME
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
E V+P+E+TM+ ++S+C++ +DL G +I+++G++
Sbjct: 252 AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLE 291
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 37/227 (16%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
L + L A +F++ +L TWN++I I++ I+ ++ PNE T
Sbjct: 203 LLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEM-EAEKVRPNEIT 261
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVF---- 177
+ +I + ++ +G+ H ++ + ++N+L+ Y CG+L A +F
Sbjct: 262 MIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMA 321
Query: 178 ---------VMIG------------------KKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+++G +K VV WN++ISG V+ ++A+ L+ E
Sbjct: 322 QKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHE 381
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M++ ++PD+VTMV LSAC++ L+ GIW+ +IE++ + +D+
Sbjct: 382 MQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVAL 428
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 10/205 (4%)
Query: 44 AQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++L+ FD + L + + + F L+ AR++ +IP+ ++ WN +I
Sbjct: 308 GELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCV 367
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
+ + ++ +F ++ + P++ T+ + A ++ VG IH E D+
Sbjct: 368 QAKQGKEALALFHEMQIRT-IEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDV 426
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +L+ YA CG++A A VF I +++ ++W ++I G G + A+ + +M
Sbjct: 427 ALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHI 486
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
+ PDE+T + VLSAC +E G
Sbjct: 487 GIVPDEITFLGVLSACCHGGLVEEG 511
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 131/223 (58%), Gaps = 7/223 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
LK+I AQM+ DP+++S+L CALS L+Y+ K+ I PN+++WN IR
Sbjct: 68 HLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRG 127
Query: 98 YSSSDEPIQSFMIFLQLVYNS--PYFPNEFTLPFVIKAAARPVQFRVGQAIHG---MFED 152
+S S+ P +SF+++ Q++ + P+ FT P + K A +G I G
Sbjct: 128 FSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRL 187
Query: 153 DLV--ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+LV + N+ IH +A CGD+ A VF +D+VSWN +I+G+ + G EKAI +Y+
Sbjct: 188 ELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKL 247
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
ME E VKPD+VTM+ ++S+C+ DL G ++++NG++M
Sbjct: 248 MESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRM 290
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 43/252 (17%)
Query: 43 HAQMLSTDFFFDPYSAS-KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
H L + ++AS +F C +E ARK+FD+ P +L +WN LI Y
Sbjct: 181 HVLKLRLELVSHVHNASIHMFASCG-----DMENARKVFDESPVRDLVSWNCLINGYKKI 235
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ----------------- 144
E ++ ++ +L+ + P++ T+ ++ + + G+
Sbjct: 236 GEAEKAIYVY-KLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPL 294
Query: 145 --AIHGMF----------------EDDLVIS-NSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
A+ MF E ++S ++I YA CG L ++ +F + +KDV
Sbjct: 295 VNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDV 354
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V WN+MI G V+ + A+ L++EM+ N KPDE+TM+ LSAC++ L+ GIW+ +
Sbjct: 355 VLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRY 414
Query: 246 IEKNGIKMDLTF 257
IEK + +++
Sbjct: 415 IEKYSLSLNVAL 426
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 11/183 (6%)
Query: 62 FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
+ C L L+ +RK+FD + + ++ WN +I + + +F Q + S
Sbjct: 333 YARCGL-----LDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALF-QEMQTSNTK 386
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCV 176
P+E T+ + A ++ VG IH E ++ + SL+ YA CG+++ A V
Sbjct: 387 PDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSV 446
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F I ++ +++ ++I G G AI + EM + PDE+T + +LSAC +
Sbjct: 447 FHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMI 506
Query: 237 EFG 239
+ G
Sbjct: 507 QTG 509
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 131/220 (59%), Gaps = 5/220 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+I AQM+ST + ++AS+L CALS L+Y ++ +I + N+++WN IR
Sbjct: 72 QLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRG 131
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y S + FM++ +++ P+ T P ++K +G + G FE
Sbjct: 132 YVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFEC 191
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N+ I CG+L++AY VF +D+V+WNSMI+G V+ G +AI++Y+EME
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
E V+P+E+TM+ ++S+C++ +DL G +I+++G++
Sbjct: 252 AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLE 291
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 37/227 (16%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
L + L A +F++ +L TWN++I I++ I+ ++ PNE T
Sbjct: 203 LLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEM-EAEKVRPNEIT 261
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVF---- 177
+ +I + ++ +G+ H ++ + ++N+L+ Y CG+L A +F
Sbjct: 262 MIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMA 321
Query: 178 ---------VMIG------------------KKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+++G +K VV WN++ISG V+ ++A+ L+ E
Sbjct: 322 QKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHE 381
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M++ ++PD+VTMV LSAC++ L+ GIW+ +IE++ + +D+
Sbjct: 382 MQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVAL 428
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 10/205 (4%)
Query: 44 AQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++L+ FD + L + + + F L+ AR++ +IP+ ++ WN +I
Sbjct: 308 GELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCV 367
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
+ + ++ +F ++ + P++ T+ + A ++ VG IH E D+
Sbjct: 368 QAKQGKEALALFHEMQIRT-IEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDV 426
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +L+ YA CG++A A VF I +++ ++W ++I G G + A+ + +M
Sbjct: 427 ALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHI 486
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
+ PDE+T + VLSAC +E G
Sbjct: 487 GIVPDEITFLGVLSACCHGGLVEEG 511
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 139/270 (51%), Gaps = 42/270 (15%)
Query: 27 QRHPHF-----LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFD 81
Q HP N K LK+IH+Q++ T ++ SKL C +S + L YA +F
Sbjct: 23 QTHPSLTLLSTCKNLKTLKQIHSQVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLLFK 82
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
I +PN WN +IR S S+ PI + ++ ++ +S + PN +T PFV+K+ AR
Sbjct: 83 SIGKPNQIIWNNIIRGLSLSESPILAIQYYVDMI-SSGFTPNTYTYPFVLKSCARISSTH 141
Query: 142 VGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF-------------VMIGK- 182
G+ IHG F++D + SLI Y G+L A VF ++ G
Sbjct: 142 EGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGYA 201
Query: 183 -----------------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
+DVVSWN+MI+G+ + G FE+A+ + EM NV P+ T++
Sbjct: 202 SRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLS 261
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
VLSACA+ L+ G WVSS IE++G++ ++
Sbjct: 262 VLSACAQSGSLKMGNWVSSWIEEHGLESNI 291
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 23/242 (9%)
Query: 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL 73
H + T+ V NG + + + ++ D S + L T A F L
Sbjct: 162 HTSLITMYVQNGELGNARLVFERSSMR-------------DVVSYTALITGYASRGF--L 206
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
+ A ++FD+IP ++ +WN +I Y+ S + +IF + + + PN TL V+ A
Sbjct: 207 DQALELFDEIPVRDVVSWNAMIAGYTQSGR-FEEALIFFEEMLRANVTPNMSTLLSVLSA 265
Query: 134 AARPVQFRVGQAI------HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A+ ++G + HG+ E ++ + N+LI YA CGDL A +F I K+V+S
Sbjct: 266 CAQSGSLKMGNWVSSWIEEHGL-ESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVIS 324
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN MI G+ +++A+ L+R+M NV+P++VT++ +L ACA L G W+ ++I+
Sbjct: 325 WNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYID 384
Query: 248 KN 249
KN
Sbjct: 385 KN 386
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE A +F+ I N+ +WN +I Y+ ++ +F Q++ S PN+ TL ++
Sbjct: 307 LENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQML-QSNVEPNDVTLLSILP 365
Query: 133 AAARPVQFRVGQAIHGMFEDDL------VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A A +G+ IH + ++ + SLI YA CG++ +A +F + K +
Sbjct: 366 ACANLGALGLGKWIHAYIDKNMKNLANNALWTSLIDMYAKCGNIEVANQIFDGMNPKSLA 425
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
SWN+MISGF G + AI L+ M E + PD +T + VLSAC L+ G
Sbjct: 426 SWNAMISGFAMHGQADLAISLFSRMTKEGLVPDNITFIGVLSACNHAGLLDLG 478
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 140/259 (54%), Gaps = 40/259 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS-LEYARKMFDQIPQPNLYTWN 92
+ Q++LK+IHA+ML T D Y+ +K + C ST S L YA+ +FD +P+ + WN
Sbjct: 54 SKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWN 113
Query: 93 TLIRAYSSSDEPIQSFMIFLQ-LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+IR +S SDEP +S +++ + L ++P+ N +T P ++KA + IH
Sbjct: 114 LMIRGFSCSDEPERSLLLYQRMLCCSAPH--NAYTFPSLLKACSNLSALEETTQIHAQIT 171
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS---------------- 190
+E+D+ NSLI+ YA G+ +A+ +F I K D VSWNS
Sbjct: 172 KLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALT 231
Query: 191 ---------------MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
MISG+V+ G ++A++L+ EM+ +V+PD V++ LSACA+
Sbjct: 232 LFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGA 291
Query: 236 LEFGIWVSSHIEKNGIKMD 254
LE G W+ S++ K I+MD
Sbjct: 292 LEQGKWIHSYLTKTRIRMD 310
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 37/252 (14%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+ ++ +IHAQ+ + D Y+ + L A + + + A +FD+IP+P+ +WN
Sbjct: 157 LSALEETTQIHAQITKLGYENDVYAVNSLINSYAAT--GNFKLAHLLFDRIPKPDAVSWN 214
Query: 93 TLIRAYSSSDEPIQSFMIFLQLV------------------------------YNSPYFP 122
++I+ Y+ + + + +F ++V NS P
Sbjct: 215 SVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEP 274
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVF 177
+ +L + A A+ G+ IH D V+ LI YA CGD+ A VF
Sbjct: 275 DNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVF 334
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
I +K V +W ++ISG+ G +AI + EM+ +KP+ +T VL+AC+ +E
Sbjct: 335 KNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVE 394
Query: 238 FGIWVSSHIEKN 249
G + ++E++
Sbjct: 395 EGKLIFYNMERD 406
>gi|449528126|ref|XP_004171057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 415
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 129/228 (56%), Gaps = 8/228 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++LK +HA+++ + KL + C++S L YA +FD +PQPN + +N LIR
Sbjct: 2 RELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDHLPQPNKFMFNCLIR 61
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMF 150
YS+S PI + +++Q++ S + PN FTLPFV+K+ A + + +H GM
Sbjct: 62 GYSTSPHPINAIFLYVQMM-RSGFLPNRFTLPFVLKSCASQLAYWEAFVVHCQAIRLGML 120
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ + N+LI+ YAV G + AY VF + + +VSWNSMI G+ G + A L+RE
Sbjct: 121 SH-VYVHNALINAYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRNGLCKGAFLLFRE 179
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
M +PD+ T+V +LS C+K L+ G V ++E GI+ DL
Sbjct: 180 MRETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLILR 227
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 119/222 (53%), Gaps = 9/222 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H Q + Y + L A + F ++ A ++FD++ L +WN++I Y +
Sbjct: 110 VHCQAIRLGMLSHVYVHNALIN--AYAVFGFVQCAYQVFDEMSNRTLVSWNSMIGGYFRN 167
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVI 156
+F++F ++ + + P++FTL ++ ++ + +G+++H E DL++
Sbjct: 168 GLCKGAFLLFREM-RETGFQPDKFTLVHLLSICSKSCRLDIGKSVHHYVEITGIEFDLIL 226
Query: 157 SNSLIHF-YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
N+L+ Y+ G + A +F I +K+V+SWNSMI +V+ G ++A+ L+++M
Sbjct: 227 RNALLDIAYSKHGLIRHAREIFDQIPEKNVISWNSMILCYVQDGQCKEALLLFQQMCETT 286
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ PDE T+V VLSAC++ DL G I ++ I + +T
Sbjct: 287 IIPDETTLVSVLSACSQIGDLAMGEKTHGCICRHSIVITVTL 328
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 7/196 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +H + T FD + L A S + +AR++FDQIP+ N+ +WN++I Y
Sbjct: 209 KSVHHYVEITGIEFDLILRNALLDI-AYSKHGLIRHAREIFDQIPEKNVISWNSMILCYV 267
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDLVIS- 157
+ ++ ++F Q+ + P+E TL V+ A ++ +G+ HG + +VI+
Sbjct: 268 QDGQCKEALLLFQQMC-ETTIIPDETTLVSVLSACSQIGDLAMGEKTHGCICRHSIVITV 326
Query: 158 ---NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
NSL+ Y CG L F K++VSWN +I G A++L+ M
Sbjct: 327 TLLNSLVDMYVKCGALETVLDFFFEFKDKNLVSWNIVIQALALHGHGLDALKLFNMMHTT 386
Query: 215 NVKPDEVTMVVVLSAC 230
+ PD+ T + +LSAC
Sbjct: 387 GIWPDKFTFMGLLSAC 402
>gi|255558266|ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540652|gb|EEF42215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 330
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 139/258 (53%), Gaps = 17/258 (6%)
Query: 1 METLSTPVISIPRHPNPTTLTVNNGHQRHPHFL------TNQKQLKRIHAQMLSTDFFFD 54
M + +P + I P N+ +Q H H L + QLK+IHAQ L +
Sbjct: 5 MAIIQSPPLRILTSSKPN----NSLNQHHAHLLGYLNDCKDMSQLKQIHAQALRSTLPDS 60
Query: 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS-DEPIQSFMIFLQ 113
P+S S+F+ L+YA ++F + PN + WNTLIRA + S D QSF+++ +
Sbjct: 61 PHSLFLYSKILHFSSFNDLDYAYRLFSKFDNPNAFMWNTLIRACARSYDRKEQSFLLYKR 120
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG 168
++ P++ T PFV+KA A G+ +H FE D+ I+NSLIHFYA CG
Sbjct: 121 MIEQGAVLPDKHTYPFVLKACAYLFALNEGKQVHAQMLKHGFESDVYINNSLIHFYASCG 180
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
A VF + + +VSWN+MI V+ G F+ A++L+ +++ E +PD TM VL+
Sbjct: 181 CSEPAQYVFDKMPARSLVSWNAMIDALVQFGEFDAALKLFVQLQ-ELFEPDGYTMQSVLN 239
Query: 229 ACAKKRDLEFGIWVSSHI 246
ACA L G+WV +++
Sbjct: 240 ACAGLCALSLGMWVHAYM 257
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++HAQML F D Y + L + C S E A+ +FD++P +L +WN +I
Sbjct: 151 KQVHAQMLKHGFESDVYINNSLIHFYASCGCS-----EPAQYVFDKMPARSLVSWNAMID 205
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFED--- 152
A E + +F+QL + P+ +T+ V+ A A +G +H M
Sbjct: 206 ALVQFGEFDAALKLFVQL--QELFEPDGYTMQSVLNACAGLCALSLGMWVHAYMLRKFDV 263
Query: 153 ----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
D+++ N L+ Y CG L +A VF + K+D+ SWNSMI GF G E E +
Sbjct: 264 EVTLDVLVDNCLLDMYCKCGSLDIAMQVFERMHKRDITSWNSMILGFAMHGKAELTFEYF 323
Query: 209 REM 211
M
Sbjct: 324 DCM 326
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 143 GQAIHGMFEDD---LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG- 198
QA+ D L + + ++HF + DL AY +F + WN++I
Sbjct: 50 AQALRSTLPDSPHSLFLYSKILHFSSF-NDLDYAYRLFSKFDNPNAFMWNTLIRACARSY 108
Query: 199 GFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E++ LY+ M E V PD+ T VL ACA L G V + + K+G + D+
Sbjct: 109 DRKEQSFLLYKRMIEQGAVLPDKHTYPFVLKACAYLFALNEGKQVHAQMLKHGFESDV 166
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 136/258 (52%), Gaps = 39/258 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N K+L +IH Q+L + + S L A +L Y R +FD I PN WNT
Sbjct: 21 SNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNT 80
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
++RAYS+S++P + +++ Q+++NS P+ N +T PF++KA + F Q IH
Sbjct: 81 MLRAYSNSNDPEAALLLYHQMLHNSVPH--NSYTFPFLLKACSALSAFEETQQIHAHIIK 138
Query: 150 --FEDDLVISNSLIHFYAVC-------------------------------GDLAMAYCV 176
F ++ +NSL+ YA+ G+L MAY +
Sbjct: 139 RGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKI 198
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + +K+V+SW +MI GFV G ++A+ L ++M V +KPD +T+ LSACA L
Sbjct: 199 FQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGAL 258
Query: 237 EFGIWVSSHIEKNGIKMD 254
E G W+ ++IEKN IK+D
Sbjct: 259 EQGKWIHTYIEKNEIKID 276
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 100/237 (42%), Gaps = 35/237 (14%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALS---------------------------- 68
++ ++IHA ++ F + Y+ + L A+S
Sbjct: 127 EETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGY 186
Query: 69 -TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
F +L+ A K+F +P+ N+ +W T+I + ++ + Q++ + P+ TL
Sbjct: 187 IKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLV-AGIKPDSITL 245
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A A G+ IH E D V+ L Y CG++ A VF + K
Sbjct: 246 SCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEK 305
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
K V +W ++I G G +A++ + +M+ + P+ +T +L+AC+ E G
Sbjct: 306 KCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEG 362
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 148 GMFEDDLVISNSLIHFYAV-CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
G + L +S L+ + + +LA VF I + V WN+M+ + E A+
Sbjct: 37 GTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALL 96
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
LY +M +V + T +L AC+ E + +HI K G +++
Sbjct: 97 LYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEV 145
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 137/257 (53%), Gaps = 14/257 (5%)
Query: 10 SIPRHPNPTTLTVNNGH---QRHPHF-----LTNQKQLKRIHAQMLSTDFFFDPYSASKL 61
S+P H + T N H Q +P T+ ++K IHAQM+ST D ++ S+L
Sbjct: 34 SLPHHKDKPT-NWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRL 92
Query: 62 FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
CA+S + +L+Y K+ + N+++WN IR Y S+ PI + +++ ++
Sbjct: 93 VAFCAISEWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAI 152
Query: 122 PNEFTLPFVIKAAAR-----PVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ +T P + K A +G I F+ DL + N++IH CG+L A +
Sbjct: 153 PDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKL 212
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F +D+VSWNS+I+G+V G ++A +LY +M NV PDEVTM+ V+SA A+ +L
Sbjct: 213 FDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENL 272
Query: 237 EFGIWVSSHIEKNGIKM 253
G + IE+ G+ +
Sbjct: 273 ALGRKLHQSIEEMGLNL 289
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 115/227 (50%), Gaps = 37/227 (16%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
L + L ARK+FD+ +L +WN++I Y ++F ++ ++ P+E T
Sbjct: 200 LVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKM-GELNVMPDEVT 258
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVF---- 177
+ V+ A+A+ +G+ +H E+ + ++N+L+ Y C ++ A +F
Sbjct: 259 MIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMT 318
Query: 178 ---------VMIG------------------KKDVVSWNSMISGFVEGGFFEKAIELYRE 210
++IG +KDVV WN++I GFV+ ++A+ L+ E
Sbjct: 319 KKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHE 378
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M+ +V PD++T+V LSAC++ L+ GIW+ +++K+ + M++
Sbjct: 379 MQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVAL 425
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F LE A ++F+++P+ ++ WN LI + + ++ +F ++ S P++ T+
Sbjct: 333 AKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEM-QASSVAPDKITV 391
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A ++ VG +H + ++ + +L+ YA CG++ A VF +
Sbjct: 392 VNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPG 451
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++ ++W ++I G G AI + EM + PDE+T + VLSAC
Sbjct: 452 RNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACC 500
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 135/227 (59%), Gaps = 10/227 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +K IHAQ++ F +P+ +KL A S++E ARK+FD +P +++ WNT+I+
Sbjct: 21 KTIKSIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTIIQ 80
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y++ +++ I+ + + S N +T PFV+KA + GQAIHG +
Sbjct: 81 GYANLGPFMEALNIY-EYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHGLD 139
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL + N+L+ FYA C ++ + VF MI +KD+V+WNSMISG+ G + A+ L+ M
Sbjct: 140 LDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHNM 199
Query: 212 -EVEN---VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+V+ PD T+V +L ACA+ ++ G+W+ S++ K+GI++D
Sbjct: 200 LQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELD 246
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 18/209 (8%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNL 88
+ + K+ + IH ++ D LF AL F + + +R++FD I + ++
Sbjct: 120 MKDGKKGQAIHGHVVKHGLDLD------LFVGNALVAFYAKCNEIGASRRVFDMISEKDI 173
Query: 89 YTWNTLIRAYS---SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
TWN++I Y+ +D+ + F LQ+ ++ Y P+ TL ++ A A+ + G
Sbjct: 174 VTWNSMISGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLW 233
Query: 146 IHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
IH E D + + LI YA CG L A VF I K++V WN++I + G
Sbjct: 234 IHSYVIKSGIELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGH 293
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSA 229
++A++++ + + PD V + +LSA
Sbjct: 294 ADEALKMFSGLIDSGLHPDGVIFLCLLSA 322
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 144 QAIHGMFEDDLVISNSLIHFYAVC--GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
Q I G FE++ + L+ YA C ++ A VF + +DV WN++I G+ G F
Sbjct: 29 QIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTIIQGYANLGPF 88
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+A+ +Y M V + T VL AC +D + G + H+ K+G+ +DL
Sbjct: 89 MEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHGLDLDL 142
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 143/238 (60%), Gaps = 11/238 (4%)
Query: 23 NNGHQRHPHFL----TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYAR 77
+N + HP L T+ ++LK++ A + T D +K C+L+ T +S+++A
Sbjct: 16 SNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAH 75
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
+FDQIPQP++ +NT+ R Y+ +D P+++F +F Q+++ S FP+++T P ++KA A
Sbjct: 76 HLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILF-SGLFPDDYTFPSLLKACASC 134
Query: 138 VQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
G+ +H + +++ + +LI+ Y C ++ A VF I + VV++N+MI
Sbjct: 135 KALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMI 194
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+G+ G +A+ L+RE++ N+KP +VTM+ VLS+CA L+ G W+ +++KNG
Sbjct: 195 TGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNG 252
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 108/213 (50%), Gaps = 13/213 (6%)
Query: 33 LTNQKQLKRIHAQM-LSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
L +QL + ++ LS + + P + ++T C + ++ AR++FD+I +P + T+
Sbjct: 137 LEEGRQLHCLAIKLGLSENVYVCP-TLINMYTAC-----NEMDCARRVFDKIWEPCVVTY 190
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH---- 147
N +I Y+ P ++ +F +L + P + T+ V+ + A +G+ +H
Sbjct: 191 NAMITGYARGSRPNEALSLFRELQARN-LKPTDVTMLSVLSSCALLGALDLGKWMHEYVK 249
Query: 148 -GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F + + +LI YA CG L A CVF + +D +W++MI + G KA+
Sbjct: 250 KNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVS 309
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
L++EM +PDE+T + +L AC+ +E G
Sbjct: 310 LFKEMRKAGTEPDEITFLGLLYACSHTGLVEEG 342
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 131/226 (57%), Gaps = 6/226 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ L IHA ++ T P A L A+ +S++YA +F QI +P+ +N +IR
Sbjct: 38 RDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIR 97
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
++ P ++ ++F ++ NS P+EFT P ++K +R G+ IH + F
Sbjct: 98 GFTLKQSPHEAILLFKEMHENSVQ-PDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFG 156
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ N+LIH YA CG++ +A VF + +++V +WNSM +G+ + G +E+ ++L+ EM
Sbjct: 157 SHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEM 216
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+++ DEVT+V VL+AC + DLE G W++ ++E+ G+K + T
Sbjct: 217 LELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTL 262
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 8/223 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IHA ++ F + + L A +E AR++FD++ + N+ TWN++ Y+
Sbjct: 144 EQIHALIMKCGFGSHGFVKNTLIHMYA--NCGEVEVARRVFDEMSERNVRTWNSMFAGYT 201
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISN- 158
S + +F +++ F +E TL V+ A R +G+ I+ E+ + N
Sbjct: 202 KSGNWEEVVKLFHEMLELDIRF-DEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNP 260
Query: 159 ----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
SL+ YA CG + A +F + ++DVV+W++MISG+ + +A++L+ EM+
Sbjct: 261 TLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKA 320
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
N+ P+E+TMV +LS+CA LE G WV I+K +K+ +T
Sbjct: 321 NIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTL 363
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 103/202 (50%), Gaps = 20/202 (9%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++ AR++FDQ+ + ++ W+ +I YS + ++ +F ++ + PNE T+ +
Sbjct: 274 GQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEM-QKANIDPNEITMVSI 332
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ + A G+ +H + + + +L+ FYA CG + + VF + K+V
Sbjct: 333 LSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNV 392
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA------KKRDL--- 236
+SW +I G G +KA+E + M +NV+P++VT + VLSAC+ + RDL
Sbjct: 393 LSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVS 452
Query: 237 ---EFGIWVSSHIEKNGIKMDL 255
+FGI IE G +D+
Sbjct: 453 MSRDFGI--EPRIEHYGCMVDI 472
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 133/259 (51%), Gaps = 39/259 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS-SLEYARKMFDQIPQPNLYTWN 92
T+ +L + HA +L + ++AS+L + ++ + ++ YA +F +IP PN Y WN
Sbjct: 18 TSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWN 77
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
T+IRAY++S P + IF Q+++ S P+++T F +K+ G+ IHG
Sbjct: 78 TIIRAYANSPTPEAALTIFHQMLHAS-VLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLK 136
Query: 150 --FEDDLVISNSLIHFYAVCG---------------------DLAMAYC----------- 175
DDL I N+LIH YA CG L AY
Sbjct: 137 TGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRR 196
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF K+VVSWN+MI+G+ G F + + L+ +M+ VKPD T+V VLSACA
Sbjct: 197 VFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGA 256
Query: 236 LEFGIWVSSHIEKNGIKMD 254
L G WV ++I+KNGI +D
Sbjct: 257 LSQGEWVHAYIDKNGISID 275
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
+R++F + P N+ +WN +I YS + ++ + + ++ P+ TL V+ A A
Sbjct: 194 SRRVFGETPVKNVVSWNAMITGYSHAGR-FSEVLVLFEDMQHAGVKPDNCTLVSVLSACA 252
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ +H + D ++ +L+ Y+ CG + A VF +KD+ +WNS
Sbjct: 253 HVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNS 312
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ISG G + A++++ EM VE KP+EVT V VLSAC++ L+ G
Sbjct: 313 IISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEG 361
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 37/204 (18%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
Q + +HA + D + A+ L ++ C S+E A ++F+ + ++ TWN++
Sbjct: 259 QGEWVHAYIDKNGISIDGFVATALVDMYSKCG-----SIEKALEVFNSCLRKDISTWNSI 313
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL 154
I S+ + IF +++ + PNE T V+ A +R G+ ++
Sbjct: 314 ISGLSTHGSGQHALQIFSEMLVEG-FKPNEVTFVCVLSACSRA----------GLLDEGR 362
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N ++H + + + C+ ++G+ G E+A EL ++M
Sbjct: 363 EMFNLMVHVHGIQPTIEHYGCMVDLLGRV---------------GLLEEAEELVQKMP-- 405
Query: 215 NVKPDEVTMVVVLSACAKKRDLEF 238
K V +L AC ++E
Sbjct: 406 -QKEASVVWESLLGACRNHGNVEL 428
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
A+ +F I + WN++I + E A+ ++ +M +V PD+ T L +C
Sbjct: 61 AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120
Query: 233 KRDLEFGIWVSSHIEKNGIKMDL 255
+E G + H+ K G+ DL
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDL 143
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 136/257 (52%), Gaps = 14/257 (5%)
Query: 10 SIPRHPNPTTLTVNNGH---QRHPHF-----LTNQKQLKRIHAQMLSTDFFFDPYSASKL 61
S+P H + T N H Q +P T+ ++K IHAQM+ST D ++ S+L
Sbjct: 34 SLPHHKDKPT-NWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRL 92
Query: 62 FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
CA+S + +L+Y K+ + N ++WN IR Y S+ PI + +++ ++
Sbjct: 93 VAFCAISEWRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAI 152
Query: 122 PNEFTLPFVIKAAAR-----PVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ +T P + K A +G I F+ DL + N++IH CG+L A +
Sbjct: 153 PDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKL 212
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F +D+VSWNS+I+G+V G ++A +LY +M NV PDEVTM+ V+SA A+ +L
Sbjct: 213 FDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENL 272
Query: 237 EFGIWVSSHIEKNGIKM 253
G + IE+ G+ +
Sbjct: 273 ALGRKLHQSIEEMGLNL 289
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 115/227 (50%), Gaps = 37/227 (16%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
L + L ARK+FD+ +L +WN++I Y ++F ++ ++ P+E T
Sbjct: 200 LVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKM-GELNVMPDEVT 258
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVF---- 177
+ V+ A+A+ +G+ +H E+ + ++N+L+ Y C ++ A +F
Sbjct: 259 MIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMT 318
Query: 178 ---------VMIG------------------KKDVVSWNSMISGFVEGGFFEKAIELYRE 210
++IG +KDVV WN++I GFV+ ++A+ L+ E
Sbjct: 319 KKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHE 378
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M+ +V PD++T+V LSAC++ L+ GIW+ +++K+ + M++
Sbjct: 379 MQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVAL 425
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F LE A ++F+++P+ ++ WN LI + + ++ +F ++ S P++ T+
Sbjct: 333 AKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEM-QASSVAPDKITV 391
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A ++ VG +H + ++ + +L+ YA CG++ A VF +
Sbjct: 392 VNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPG 451
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++ ++W ++I G G AI + EM + PDE+T + VLSAC
Sbjct: 452 RNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACC 500
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 135/225 (60%), Gaps = 5/225 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+I AQM+ T D +++S+L + CA+S +L+Y K+ + + PN+++WN +IR
Sbjct: 68 QLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIRG 127
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV----QFRV-GQAIHGMFED 152
S+ P + +++ +++ + P+ +T F+ K A V F + GQ + F+
Sbjct: 128 CVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDK 187
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N +IH G+ +A+ VF +D+VSWNS+I+G+V +A+ +Y++M
Sbjct: 188 DMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMI 247
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
E+VKPDEVTM+ V+SACA+ L+ G + +IE++G+ + ++
Sbjct: 248 TEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISL 292
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 124/252 (49%), Gaps = 39/252 (15%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
I Q+L F D Y + + L + A K+FD+ +L +WN+LI Y
Sbjct: 176 ILGQVLKMGFDKDMYLYNGIIH--MLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRR 233
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---DLVIS- 157
+P ++ I+ Q++ P+E T+ V+ A A+ ++G+ IH E+ +L IS
Sbjct: 234 RQPREAMGIYQQMI-TEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISL 292
Query: 158 -NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE-------------- 202
N+L+ Y CGDL +F + KK VVSW +MI G+ + G +
Sbjct: 293 VNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNV 352
Query: 203 -----------------KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+A+EL+REM+ N+KPD+VTM+ LSAC++ L+ G+W ++
Sbjct: 353 VAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNY 412
Query: 246 IEKNGIKMDLTF 257
I+K+ + +D+
Sbjct: 413 IKKHNLSLDVAL 424
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 6/172 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ A K+F +P+ N+ WN +I + ++ ++ +F ++ + S P++ T+ +
Sbjct: 337 LDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQW-SNMKPDKVTMLHCLS 395
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A ++ G H + D+ + +LI YA CG++ A VF + +++ ++
Sbjct: 396 ACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLT 455
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
W ++I G G AI + +M + PDE+T + VL+AC +E G
Sbjct: 456 WTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEG 507
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 132/233 (56%), Gaps = 15/233 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASK----LFTPCALSTFSSLEYARKMFDQIPQPNL 88
+T+ Q ++HAQ+L + DP ++ LFT ALS L YA + + + N
Sbjct: 3 ITSLSQAMQLHAQILKSP---DPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNS 59
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYN--SPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
+ NT+IRAYS + +P Q+ +FL ++ SP P++FT PF++K+ AR Q RVG+ +
Sbjct: 60 FFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPR-PDKFTYPFLLKSCARLKQPRVGKQL 118
Query: 147 HGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
HG+ E D +SN LIH Y+ CG AY VF + +DVVSW SMI GFV+
Sbjct: 119 HGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRA 178
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+AI L+ EM + V+P+E T+V VL ACA + G V IE+ I ++
Sbjct: 179 LEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLE 231
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 27/233 (11%)
Query: 12 PRHPNPTTLTVNNGHQRHPHFLTNQKQLKR------IHAQMLSTDFFFDPYSASKL---F 62
P P P T +P L + +LK+ +H + + D Y ++ L +
Sbjct: 89 PTSPRPDKFT-------YPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMY 141
Query: 63 TPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP 122
+ C S A K+F ++ ++ +W ++I + D +++ +F ++V + P
Sbjct: 142 SSCGKSG-----RAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDG-VEP 195
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVF 177
NE T+ V++A A +G+ + G+ E+ + + +LI YA CG + A VF
Sbjct: 196 NEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVF 255
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
I KDV +W +MISG G E+A+ L+ +ME ++PDE TM VLSAC
Sbjct: 256 DGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSAC 308
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 134/233 (57%), Gaps = 12/233 (5%)
Query: 31 HFLTNQ----KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP 86
H+L +Q KQLK +HAQ++ + KL + L YA K+FDQIPQP
Sbjct: 40 HYLIDQCISLKQLKHVHAQIILHGLATQVLTLGKLVSSSV--QLRDLRYAHKLFDQIPQP 97
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
N + +N LI+ YS+S +PI+S +++ ++V + PN+FT+PFV+KA A + +G +
Sbjct: 98 NKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDG-ILPNQFTIPFVLKACAAKSCYWLGVCV 156
Query: 147 HGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
H + N++++ Y CG + A VF I ++ +VSWNSMI+G+ + G
Sbjct: 157 HAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRS 216
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E+A+ ++REM+ ++PD T+V +LS K + + G +V H+ GI++D
Sbjct: 217 EEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEID 269
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 42/233 (18%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++ C L T AR++FD I + L +WN++I YS ++ ++F ++
Sbjct: 178 IYVACGLIT-----SARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREM-QEVGL 231
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYC 175
P+ FTL ++ + + F +G+ +H E D +++N+L+ YA CG+L A
Sbjct: 232 EPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKS 291
Query: 176 VFVMIGKKDVVSWNSMISGF-------------------------------VEGGFFEKA 204
VF + KDVVSW MI+ + V+ G + +A
Sbjct: 292 VFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEA 351
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
++L+ M V ++ T+V +LS+C+ DL G S+I N I + T
Sbjct: 352 VDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATL 404
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 110/213 (51%), Gaps = 18/213 (8%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS---LEYARKMFDQIPQPNLYTW 91
N K K + QML D + C ++ +++ ++ A + F+Q+P N+ +W
Sbjct: 285 NLKCAKSVFDQMLDKDV---------VSWTCMINAYANHGLIDCALEFFNQMPGKNVVSW 335
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MF 150
N++I + ++ +F ++ +S N+ TL ++ + + +G+ H +F
Sbjct: 336 NSIIWCHVQEGLYAEAVDLFYRMC-DSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIF 394
Query: 151 EDDLVIS----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
++++ +S N++I YA CG L A VF + +K+ VSWN +I G+ ++AIE
Sbjct: 395 DNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIE 454
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++ +M+ V PDE+T +LSAC+ ++ G
Sbjct: 455 MFEKMQASGVCPDEITFTGLLSACSHSGLVDTG 487
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 134/250 (53%), Gaps = 13/250 (5%)
Query: 3 TLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLF 62
TLS P +P P L++ + QLK+IH+Q + T +P +++
Sbjct: 6 TLSPPPTHLPSLPQTPPLSL-------IKTCKSMAQLKQIHSQTICTGLISNPIVPAQII 58
Query: 63 TPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP 122
C +EYAR +FD +P PN + WN +I+ YS P + ++ +++ P
Sbjct: 59 AFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERG-VMP 117
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
+E+T PF++K R + G+ +H F ++ + N+LIH Y++ G++++A VF
Sbjct: 118 DEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVF 177
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
K DVV+WN MISG+ F+++++L+ EME V P +T+V VLSAC+K +DL
Sbjct: 178 DRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLN 237
Query: 238 FGIWVSSHIE 247
G V +++
Sbjct: 238 VGKRVHRYVK 247
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 39/257 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T K + +H ++ F + + + L +LS + AR +FD+ + ++ TWN
Sbjct: 133 TAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLS--GEVSVARGVFDRSSKGDVVTWNV 190
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED- 152
+I Y+ S + +S +F ++ P+ TL V+ A ++ VG+ +H +D
Sbjct: 191 MISGYNRSKQFDESMKLFDEM-ERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDL 249
Query: 153 ----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG--------- 199
V+ N+LI YA CGD+ A +F + +DV+SW ++++GF G
Sbjct: 250 KIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYF 309
Query: 200 ----------------------FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
F++ + L+REM+ N+KPDE TMV +L+ACA LE
Sbjct: 310 DKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALE 369
Query: 238 FGIWVSSHIEKNGIKMD 254
G W+ ++I+KN IK+D
Sbjct: 370 LGEWIKAYIDKNEIKID 386
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+ + AR FD++P+ + +W +I Y + + +F ++ + P+EF
Sbjct: 295 GFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREM-QAANIKPDEF 353
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ ++ A A +G+ I + D + N+LI Y CG++ A +F +
Sbjct: 354 TMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAM 413
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+D +SW ++I G G+ E+A++++ +M ++ PDEVT + VL AC
Sbjct: 414 PHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCAC 463
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
GD+ A VF + + WN+MI G+ G A+ +Y EM V PDE T +L
Sbjct: 67 GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126
Query: 228 SACAKKRDLEFGIWVSSHIEKNG 250
+ ++ G + HI K G
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLG 149
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 141/274 (51%), Gaps = 58/274 (21%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK++HA + T DP +A+++ CA S+ ++YAR +F Q+P+PN + WNT++R
Sbjct: 33 RDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSS-RDIDYARAVFRQMPEPNCFCWNTILR 91
Query: 97 AYS-SSDEPIQS--FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--- 150
+ ++DE +QS M+F ++ + PN FT P V+KA AR + R G+ IHG+
Sbjct: 92 VLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKF 151
Query: 151 ---EDDLVISNSLIHFYAVC---------------------------------------- 167
ED+ VISN L+ Y +C
Sbjct: 152 GFHEDEFVISN-LVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIM 210
Query: 168 -------GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220
GD+ A +F + ++ VVSWN MISG+ + G F +AI L++EM+ N+ P+
Sbjct: 211 IDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNY 270
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
VT+V VL A A+ LE G W+ + KN I++D
Sbjct: 271 VTLVSVLPAIARIGALELGKWIHLYAGKNKIEID 304
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 97/184 (52%), Gaps = 6/184 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
++ A+ +FD++PQ ++ +WN +I Y+ + I++ +F Q + +S PN TL
Sbjct: 217 LGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLF-QEMQSSNIDPNYVTLVS 275
Query: 130 VIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A AR +G+ IH E D V+ ++L+ Y+ CG + A VF + K++
Sbjct: 276 VLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRN 335
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
++W+++I F G E AI + M V P++V + +LSAC+ +E G S
Sbjct: 336 AITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFS 395
Query: 245 HIEK 248
H+ K
Sbjct: 396 HMVK 399
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S S++ A ++F+ +P+ N TW+ +I A++ + +I L+ + PN+
Sbjct: 316 SKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRA-EDAIIHFHLMGKAGVTPNDVAY 374
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
++ A + G+ E+ + ++ + + C+ ++G+
Sbjct: 375 IGILSACSHA----------GLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGR----- 419
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G E+A EL R M +E PD+V +L AC ++L+ G
Sbjct: 420 ----------AGHLEEAEELIRNMPIE---PDDVIWKALLGACKMHKNLKMG 458
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 143/259 (55%), Gaps = 40/259 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS-LEYARKMFDQIPQPNLYTWN 92
+ Q++LK+IHA+ML T D Y+ +K + C ST S L YA+ +FD +P+ + WN
Sbjct: 25 SKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWN 84
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+IR +S SDEP +S +++ +++ +S P+ N +T P ++KA + F IH
Sbjct: 85 LMIRGFSCSDEPERSLLLYQRMLCSSAPH--NAYTFPSLLKACSNLSAFEETTQIHAQIT 142
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVF------------------VMIGKKDV--- 185
+E+D+ NSLI+ YAV G+ +A+ +F V GK D+
Sbjct: 143 KLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALT 202
Query: 186 ----------VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+SW +MISG+V+ ++A++L+ EM+ +V+PD V++ LSACA+
Sbjct: 203 LFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGA 262
Query: 236 LEFGIWVSSHIEKNGIKMD 254
LE G W+ S++ K I+MD
Sbjct: 263 LEQGKWIHSYLNKTRIRMD 281
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 37/244 (15%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IHAQ+ + D Y+ + L A++ + + A +FD+IP+P+ +WN++I+ Y
Sbjct: 136 QIHAQITKLGYENDVYAVNSLINSYAVT--GNFKLAHLLFDRIPEPDDVSWNSVIKGYVK 193
Query: 101 SDEPIQSFMIF---------------------------LQLVY---NSPYFPNEFTLPFV 130
+ + + +F LQL + NS P+ +L
Sbjct: 194 AGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANA 253
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A+ G+ IH D V+ LI YA CG++ A VF I KK V
Sbjct: 254 LSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSV 313
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+W ++ISG+ G +AI + EM+ +KP+ +T VL+AC+ +E G +
Sbjct: 314 QAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYS 373
Query: 246 IEKN 249
+E++
Sbjct: 374 MERD 377
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 123/231 (53%), Gaps = 10/231 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T LK I A M+ + D + SKL A++ + YA ++F PNL+ WNT
Sbjct: 18 TRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNT 77
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IR YS SD PI + ++ + + PN +T FV+KA + ++ GQ +H
Sbjct: 78 IIRGYSISDSPITAIALYRDM-FLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKV 136
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
FE LV N LI YA CG + A +F + + D SW++M+SG+ + G +A++
Sbjct: 137 GLDFETPLV--NGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALK 194
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
L+REM+ ENV D T+ V+ C L+ G WV S+++K G+K+D+
Sbjct: 195 LFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVL 245
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 108/208 (51%), Gaps = 14/208 (6%)
Query: 40 KRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ +H+Q++ F+ KL+ C ++YA MFD++P+P+ +W+T++
Sbjct: 127 QELHSQIVKVGLDFETPLVNGLIKLYAACG-----CMDYACVMFDEMPEPDSASWSTMVS 181
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---- 152
Y+ + + +++ +F ++ + + FTL V+ +G+ +H +
Sbjct: 182 GYAQNGQAVEALKLFREMQAEN-VSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVK 240
Query: 153 -DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+V+ +L+ Y+ CG L A VF + ++DV +W++MI+G+ G EKA++L+ M
Sbjct: 241 IDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAM 300
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ P+ VT VLSAC+ +E G
Sbjct: 301 KRSKTIPNCVTFTSVLSACSHSGLVEKG 328
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 119/225 (52%), Gaps = 6/225 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+I A + T + AS+L CALS + YA +FDQ PN + WNT+I+
Sbjct: 67 QLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMIKG 126
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y ++ P F F Q++ N F + + F +KA + + VG A+H + F+
Sbjct: 127 YCKANHPSMGFSFFRQMIRNRAEF-DSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDS 185
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
DL + N LI Y G L A +F KDVV+W +MI+G+ + ++AI L+ M
Sbjct: 186 DLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSML 245
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+VKP+EVTM+ +LSAC++K D E G + HI + I L
Sbjct: 246 SSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNL 290
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 6/165 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L ARK+FD++P+ N+ +WN +I YS + +P+++ +F +V P E TL V+
Sbjct: 335 LGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLS 394
Query: 133 AAARPVQFRVGQAIHG------MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A+ + +GQ IH + L++ N+++ YA CG + A +F + +K++V
Sbjct: 395 ASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLV 454
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
SWNSMIS + G +KA+ L+ +M +KPD +T + VLSAC+
Sbjct: 455 SWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACS 499
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L +AR+MFD+ ++ TW T+I Y+ ++ ++ +F ++ +S PNE T+ ++
Sbjct: 203 LGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSML-SSDVKPNEVTMIALLS 261
Query: 133 AAARPVQFRVGQAIHG-MFEDDLVIS----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A ++ +G+ +H + D+ S N+++ Y CG L A +F + ++DV S
Sbjct: 262 ACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFS 321
Query: 188 WNSMISGFVEGGFFEKAIELYREM--------------------------------EVEN 215
W S+++G+ + G A +L+ EM +V
Sbjct: 322 WTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVG 381
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWV-SSHIEKNGIKMDLTFE 258
+ P E T+V VLSA + LE G + +H+ K GI++ L +
Sbjct: 382 LVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILK 425
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 29/167 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S++ A K+F +P+ NL +WN++I AY+S ++ +F Q++ S P+ T V
Sbjct: 436 GSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMI-GSGLKPDHITFIGV 494
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + GQA HF +M C V ++ +
Sbjct: 495 LSACSYGGFVSEGQA----------------HFE------SMENCFGVEPKREH---YAC 529
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
M+ G ++A EL M +E E +L AC K ++E
Sbjct: 530 MVDLLSRVGLLKEAYELISRMPME---ASEGGWGALLDACRKHGNVE 573
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 6/225 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQ K+IHAQ++ + + KL + CA+S +L+YA +F+QI PN + +N+LIR
Sbjct: 2 KQSKQIHAQIILNNLTDQTLTLGKLVSFCAVSDAGNLDYAHLVFNQISIPNKFMYNSLIR 61
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y +S+ PI+S ++ QL+ +S PNEFT PFV+KA A + +HG F
Sbjct: 62 GYCNSNSPIKSMFLYRQLI-DSGLSPNEFTFPFVLKACASKSAHWMSMIVHGHAQKLGFA 120
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + N LI+ Y CG + A +F + ++ +VSWNSMI G+ + G+ ++ L++EM
Sbjct: 121 SLICVQNGLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEM 180
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ D+ T+V +L C+++ D+ G +V +I+ G+K+DL
Sbjct: 181 REIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLV 225
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+EYARK FDQ+P+ N+ +WN++I +Y + ++ +F ++ ++ PNE TL V+
Sbjct: 271 VEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALDLFHEM-HSFRVVPNEATLLSVLS 329
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + +G+ IH + + NSLI YA CG L +A VF + K++VS
Sbjct: 330 ACGQIGDLVMGKKIHNYICGTSSMYSVTLCNSLIDMYAKCGALRIAIDVFNEMPNKNLVS 389
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
WN +I G+ +A+EL+R+M+ V PDE+T + +LSAC+ ++ G++
Sbjct: 390 WNVIIGALALHGYGVEAVELFRKMQAAGVWPDEITFMGLLSACSHSGLVDSGLY 443
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 39/211 (18%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+ YARKMFD + + +L +WN++I YS + F++F ++ ++FTL ++
Sbjct: 139 IRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEM-REIGTEADDFTLVNLLL 197
Query: 133 AAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
+R +G+ +H GM + DLV N+LI YA CG L +A VF + K+VV
Sbjct: 198 VCSRRCDINLGRFVHLYIQITGM-KIDLVARNALIDMYAKCGALVLAERVFQQMPNKNVV 256
Query: 187 SW-------------------------------NSMISGFVEGGFFEKAIELYREMEVEN 215
SW NSMIS +V+GG +A++L+ EM
Sbjct: 257 SWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALDLFHEMHSFR 316
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
V P+E T++ VLSAC + DL G + ++I
Sbjct: 317 VVPNEATLLSVLSACGQIGDLVMGKKIHNYI 347
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 130/242 (53%), Gaps = 13/242 (5%)
Query: 3 TLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLF 62
TLS P +P P L++ + QLK+IH+Q + T +P +++
Sbjct: 6 TLSPPPTHLPSLPQTPPLSLIKT-------CKSMAQLKQIHSQTICTGLISNPIVPAQII 58
Query: 63 TPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP 122
C +EYAR +FD +P PN + WN +I+ YS P + ++ +++ P
Sbjct: 59 AFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERG-VMP 117
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
+E+T PF++K R + G+ +H F ++ + N+LIH Y++ G++++A VF
Sbjct: 118 DEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVF 177
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
K DVV+WN MISG+ F+++++L+ EME V P +T+V VLSAC+K +DL
Sbjct: 178 DRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLN 237
Query: 238 FG 239
G
Sbjct: 238 VG 239
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 29/221 (13%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T K + +H ++ F + + + L +LS + AR +FD+ + ++ TWN
Sbjct: 133 TAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLS--GEVSVARGVFDRSSKGDVVTWNV 190
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
+I Y+ S + +S +F ++ P+ TL V+ A ++ VG+ +H + D
Sbjct: 191 MISGYNRSKQFDESMKLFDEM-ERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRNYFDK 249
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ ++D VSW +MI G+++ F++ + L+REM+
Sbjct: 250 M--------------------------PERDFVSWTAMIDGYLQVNRFKEVLSLFREMQA 283
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
N+KPDE TMV +L+ACA LE G W+ ++I+KN IK+D
Sbjct: 284 ANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKID 324
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 17/186 (9%)
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
R FD++P+ + +W +I Y + + +F ++ + P+EFT+ ++ A A
Sbjct: 244 RNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREM-QAANIKPDEFTMVSILTACAH 302
Query: 137 PVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
+G+ I + D + N+LI Y CG++ A +F + +D +SW ++
Sbjct: 303 LGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAV 362
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV-----------VLSACAKKRDLEFGI 240
I G G+ E+A++++ +M ++ PDEV + +L AC RD E
Sbjct: 363 IFGLAINGYGEEALDMFSQMLKASITPDEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAE 422
Query: 241 WVSSHI 246
+ I
Sbjct: 423 MAAQQI 428
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
GD+ A VF + + WN+MI G+ G A+ +Y EM V PDE T +L
Sbjct: 67 GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126
Query: 228 SACAKKRDLEFGIWVSSHIEKNG 250
+ ++ G + HI K G
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLG 149
>gi|255540507|ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550433|gb|EEF51920.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 142/262 (54%), Gaps = 16/262 (6%)
Query: 3 TLSTPVISIPRHP-NPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL 61
++ TP+ ++ + P NP +L + K LK++HA +L T D L
Sbjct: 12 SILTPISTVTQFPDNPKSLILQQ--------CKTIKDLKQVHAHLLKTRRHLDSTVTENL 63
Query: 62 FTPCALST-FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
A+ +++EYA +FD I P+ +N +IRA++ P ++ F Q++ +
Sbjct: 64 LESAAIILPATTMEYALSIFDNIDGPDSSAYNIMIRAFTLKRSPQKALAFFKQMLEEAVA 123
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
F +EFT P +KA +R + G+ IH F + ++ N+LIH YA CG++ +A
Sbjct: 124 F-DEFTFPCTLKACSRLRGRKEGKQIHAQIVKYGFGSNCIVLNTLIHMYANCGEIEIARN 182
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F + ++D+ +WNSM SG+V+ G++E + L+ EM V +++T++ VL+AC + D
Sbjct: 183 MFDGMSERDIFAWNSMFSGYVKSGYYEDTVRLFEEMRELGVGFNDITLISVLAACGRLAD 242
Query: 236 LEFGIWVSSHIEKNGIKMDLTF 257
+E G W++ ++ NG+ ++
Sbjct: 243 VELGEWIAKYVRVNGLDRNMNL 264
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 126/234 (53%), Gaps = 16/234 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L +K+ K+IHAQ++ F + + L + C +E AR MFD + + +++
Sbjct: 139 LRGRKEGKQIHAQIVKYGFGSNCIVLNTLIHMYANCG-----EIEIARNMFDGMSERDIF 193
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI--- 146
WN++ Y S + +F ++ F N+ TL V+ A R +G+ I
Sbjct: 194 AWNSMFSGYVKSGYYEDTVRLFEEMRELGVGF-NDITLISVLAACGRLADVELGEWIAKY 252
Query: 147 ---HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
+G+ + ++ + +L+ YA CG++ A +F + +DVV+W++MISG+ + ++
Sbjct: 253 VRVNGL-DRNMNLVTALVDMYAKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQE 311
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
A++L+ EM++ N+ P+EVTMV VLS CA L G W+ +I++ G+ + +T
Sbjct: 312 AVDLFNEMQMANLDPNEVTMVSVLSCCAALGALGTGKWIHLYIKRKGMNLTVTL 365
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++ AR++FDQ+ ++ W+ +I YS + ++ +F ++ + PNE T+ V
Sbjct: 276 GEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQEAVDLFNEMQM-ANLDPNEVTMVSV 334
Query: 131 IKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+ A G+ IH GM + + +L+ FY CG + A VF ++ K+
Sbjct: 335 LSCCAALGALGTGKWIHLYIKRKGM-NLTVTLGTALVDFYGKCGLVDSAIEVFQLMPVKN 393
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
V SW ++I G G ++A+E Y+ M NV+P++V ++ V
Sbjct: 394 VYSWTALIQGLANNGQGKRALEYYQLMRESNVEPNDVWLMKV 435
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 127/224 (56%), Gaps = 7/224 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ +K++HA ++ + Y+ SK+ AL S L +A K+F+QI P + WNTL+R
Sbjct: 325 EAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQ-SDLVFAHKVFEQIESPTTFLWNTLLR 383
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ SD P + ++F + P+ T PFV+KA A+ + G+ +H F
Sbjct: 384 GLAQSDAP-KDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFL 442
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ +SNSLIH YA CGDL A +F + KDVVSWNS+I G+ + F++ + L+ M
Sbjct: 443 LDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELM 502
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ E V+ D+VTMV V+SAC D + +IE+N I++D+
Sbjct: 503 QAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDV 546
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 9/188 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + +L A+K+FDQIP +L +W+++I AYS + S +F Q+ + P+
Sbjct: 586 AYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQM-QRAKVKPDAV 644
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+ V+ A A +G+ IH + D ++ NSLI +A CG + A VF +
Sbjct: 645 VIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEM 704
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+KD +SWNS+I G GF ++A+ ++ M E +P+EVT + VL ACA KR ++ G+
Sbjct: 705 EEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGL 764
Query: 241 WVSSHIEK 248
H E+
Sbjct: 765 ---DHFER 769
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 119/261 (45%), Gaps = 45/261 (17%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K+ +++H+ ++ F D + ++ L + C L AR +FD++ ++ +WN+
Sbjct: 427 KEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACG-----DLVCARSIFDEMLVKDVVSWNS 481
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF------------- 140
LI YS + + +F +L+ ++ T+ VI A +
Sbjct: 482 LIGGYSQRNRFKEVLALF-ELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERN 540
Query: 141 -----------------RVGQ------AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVF 177
R+GQ M + + V N++IH YA G+L A +F
Sbjct: 541 HIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIF 600
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
I KD++SW+SMI + + F ++EL+R+M+ VKPD V + VLSACA L+
Sbjct: 601 DQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALD 660
Query: 238 FGIWVSSHIEKNGIKMDLTFE 258
G W+ ++ +N IK D E
Sbjct: 661 LGKWIHDYVRRNNIKTDTIME 681
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+ + +EYAR +FDQ+P N+ +W LI Y+ + ++ +F ++ P+E
Sbjct: 15 GFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGG-ISPSEI 73
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF-VM 179
T+ V+ A + +G+ +HG D + NSLI YA G + + VF M
Sbjct: 74 TVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEM 133
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++++VSW S+ISGF G +A+EL+ EM ++P+ +T + V++AC+ +E G
Sbjct: 134 LDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQG 193
Query: 240 I 240
+
Sbjct: 194 L 194
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++V N +I +A G++ A +F + ++VVSW +I G+ + +A+ L+R M
Sbjct: 5 NVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMM 64
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ P E+T++ V+ A + + G + + K GI D
Sbjct: 65 AGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSD 106
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 141/274 (51%), Gaps = 58/274 (21%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK++HA + T DP +A+++ CA S+ ++YAR +F Q+P+PN + WNT++R
Sbjct: 33 RDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSS-RDIDYARAVFRQMPEPNCFCWNTILR 91
Query: 97 AYS-SSDEPIQS--FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--- 150
+ ++DE +QS M+F ++ + PN FT P V+KA AR + R G+ IHG+
Sbjct: 92 ILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKF 151
Query: 151 ---EDDLVISNSLIHFYAVCGDLAMAYCVF------------------------------ 177
ED+ VISN L+ Y +C + AY +F
Sbjct: 152 GFHEDEFVISN-LVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIM 210
Query: 178 ----VMIGK-------------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220
V +G + VVSWN MISG+ + G F +AI L++EM+ N+ P+
Sbjct: 211 IDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNY 270
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
VT+V VL A A+ LE G W+ + KN +++D
Sbjct: 271 VTLVSVLPAIARIGALELGKWIHLYAGKNKVEID 304
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
++ A+ +FD++P ++ +WN +I Y+ + I++ +F Q + +S PN TL
Sbjct: 217 LGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLF-QEMQSSNIDPNYVTLVS 275
Query: 130 VIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A AR +G+ IH E D V+ ++L+ Y+ CG + A VF + K++
Sbjct: 276 VLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRN 335
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
++W+++I F G E AI + M V P++V + +LSAC+ +E G S
Sbjct: 336 AITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFS 395
Query: 245 HIEK 248
H+ K
Sbjct: 396 HMVK 399
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S S++ A ++F+ +P+ N TW+ +I A++ + +I L+ + PN+
Sbjct: 316 SKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRA-EDAIIHFHLMGKAGVTPNDVAY 374
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
++ A + G+ E+ + ++ + + C+ ++G+
Sbjct: 375 IGILSACSHA----------GLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGR----- 419
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G E+A EL R M +E PD+V +L AC ++L+ G
Sbjct: 420 ----------AGHLEEAEELIRNMPIE---PDDVIWKALLGACKMHKNLKMG 458
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 136/237 (57%), Gaps = 11/237 (4%)
Query: 26 HQRHPHFL---TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQ 82
HQ H L ++ K+LK +HAQ++ + KL + C L YA +FDQ
Sbjct: 39 HQTLHHLLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQE--GDLRYAHLLFDQ 96
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA-AARPVQFR 141
IPQPN + +N LIR YS+S++P++S ++F Q+V P PN+FT PFV+KA AA+P +
Sbjct: 97 IPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGP-MPNQFTFPFVLKACAAKPFYWE 155
Query: 142 V----GQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
QAI + N+++ Y C + A VF I + +VSWNSMI+G+ +
Sbjct: 156 AVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSK 215
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
GF ++AI L++EM V+ D T+V +LSA +K +L+ G +V +I G+++D
Sbjct: 216 MGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEID 272
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 43/221 (19%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
AR++FD I + +WN++I YS DE I F LQL + + FTL ++
Sbjct: 191 ARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEA----DVFTLVSLLS 246
Query: 133 AAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A+++ +G+ +H E D +++N+LI YA CG L A VF + KDVVS
Sbjct: 247 ASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVS 306
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVEN-------------------------------V 216
W SM++ + G E A++++ M V+N V
Sbjct: 307 WTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGV 366
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
PD+ T+V +LS C+ DL G +I N I + +T
Sbjct: 367 MPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTL 407
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A ++F+ +P N+ +WN++I + ++ +F ++ S P++ TL ++
Sbjct: 320 VENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCI-SGVMPDDATLVSILS 378
Query: 133 AAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ +G+ H D+++ + NSLI YA CG L A +F + +K+VVS
Sbjct: 379 CCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVS 438
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
WN +I GF E+AIE+++ M+ + PDE+T +LSAC+ ++ G
Sbjct: 439 WNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMG 490
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 35/172 (20%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRA---YSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+L+ A +F +P+ N+ +WN +I A + +E I+ F + + S +P+E T
Sbjct: 419 GALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMF----KSMQASGLYPDEITF 474
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
++ A + +G+ + IS + H+ C+ ++G+
Sbjct: 475 TGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYA----------CMVDLLGR----- 519
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
GGF +A+ L ++M V KPD V +L AC +LE
Sbjct: 520 ----------GGFLGEAMTLIQKMPV---KPDVVVWGALLGACRIYGNLEIA 558
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 142/286 (49%), Gaps = 48/286 (16%)
Query: 7 PVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCA 66
P S+ HP+ + L H + L+ IHAQM+ T Y+ SKL C
Sbjct: 27 PYDSLRNHPSLSLL----------HNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCV 76
Query: 67 LS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+S F L YA +F+ I +PNL WNT+ R ++ S +P+ + +++ ++ + PN +
Sbjct: 77 ISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMI-SLGLLPNSY 135
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T PF++K+ A+ F+ GQ IHG ++ DL + SLI Y G L A VF
Sbjct: 136 TFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRS 195
Query: 181 GKKDVVSWN-------------------------------SMISGFVEGGFFEKAIELYR 209
+DVVS+ +MISG+ E G +++A+EL++
Sbjct: 196 PHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EM N++PDE TMV V+SACA+ +E G V S I+ +G +L
Sbjct: 256 EMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNL 301
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 107/181 (59%), Gaps = 6/181 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A+K+FD+IP ++ +WN +I Y+ + ++ +F +++ + P+E T+ V+
Sbjct: 216 IESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMM-KTNIRPDESTMVTVVS 274
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A+ +G+ +H +D +L I NSL+ Y+ CG+L A +F + KDV+S
Sbjct: 275 ACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVIS 334
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN++I G+ +++A+ L++EM +P++VTM+ +L ACA ++ G W+ +I+
Sbjct: 335 WNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYID 394
Query: 248 K 248
K
Sbjct: 395 K 395
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C LE A +F+ + ++ +WNTLI Y+ + ++ ++F +++ S
Sbjct: 310 LYSKCG-----ELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEML-RSGE 363
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMA 173
PN+ T+ ++ A A +G+ IH + L + SLI YA CGD+ A
Sbjct: 364 RPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAA 423
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+ VF I K + SWN+MI GF G + A +++ M ++PD++T V +LSAC++
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRS 483
Query: 234 RDLEFG 239
L+ G
Sbjct: 484 GMLDLG 489
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 29/169 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E A ++F+ I +L +WN +I ++ +F IF ++ P++ T +
Sbjct: 418 GDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRM-RKIGIEPDDITFVGL 476
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A +R +G+ I D I+ L H+ C+ ++G
Sbjct: 477 LSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYG----------CMIDLLG--------- 517
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G F++A E+ ME+E PD V +L AC + ++E G
Sbjct: 518 ------HSGLFKEAEEMINNMEME---PDGVIWCSLLKACKIRGNVELG 557
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 6/221 (2%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N +Q K IHA + + Y+ SKL + CALS SL YA +F QI PNL+ +NT
Sbjct: 15 SNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNT 74
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------ 147
LIRAYS S P + F ++ + P++ T PF+I A + +G+ IH
Sbjct: 75 LIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKN 134
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
G+ D + +L+ FYA C + A +F I DVV WN +++G+V G +A+
Sbjct: 135 GVASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNA 194
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+R M V V+PDE + L CA+ L+ G W+ ++ K
Sbjct: 195 FRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTK 235
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 106/230 (46%), Gaps = 23/230 (10%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
G Q H L N H Q F+ + CA+ ARK+FD+IP
Sbjct: 124 GKQIHNWVLKNGVASSDRHVQTALVRFYAEC---------CAMGD------ARKLFDEIP 168
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
++ WN L+ Y ++ F ++ S P+EF L +K A+ + G+
Sbjct: 169 NLDVVQWNVLLNGYVRRGLAPEALNAFRNMLV-SGVEPDEFCLTTALKGCAQLGALQQGK 227
Query: 145 AIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
IH E D+ I +L+ YA CG + + VF + K++V SW++MI GF
Sbjct: 228 WIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALH 287
Query: 199 GFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
G KA++ M+VE+ ++PD V ++ V+ ACA E G ++ ++E
Sbjct: 288 GHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENME 337
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 130 VIKAAARPVQFRVGQAIHGMF-EDDLVISN----SLIHFYAVC--GDLAMAYCVFVMIGK 182
I A R +AIH +F + L ++N LI F A+ G L+ A +F I
Sbjct: 7 CISLAQSCSNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQN 66
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
++ ++N++I + + A+ ++ M + ENV PD+ T ++SAC + G
Sbjct: 67 PNLFAYNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQ 126
Query: 242 VSSHIEKNGI 251
+ + + KNG+
Sbjct: 127 IHNWVLKNGV 136
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 6/219 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++LK++H +++T SKL C S F + YA + QI P++Y WN++IR
Sbjct: 18 RELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYADLVLRQIHNPSVYIWNSMIR 77
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ +S P S +++ Q++ N Y P+ FT PFV+KA G+ IH FE
Sbjct: 78 GFVNSHNPRMSMLLYRQMIENG-YSPDHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFE 136
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + L+H Y C D+ VF I K +VV+W +I+G+V+ +A++++ +M
Sbjct: 137 ADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDM 196
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
NV+P+E+TMV L ACA RD++ G WV I K G
Sbjct: 197 SHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAG 235
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 123/240 (51%), Gaps = 21/240 (8%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
+ +Q K IH+ ++ + F D Y+A+ L + CA ++ K+FD IP+ N+
Sbjct: 117 IADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCA-----DMKSGLKVFDNIPKWNVV 171
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
W LI Y +++P ++ +F + + + PNE T+ + A A G+ +H
Sbjct: 172 AWTCLIAGYVKNNQPYEALKVFEDMSHWNVE-PNEITMVNALIACAHSRDIDTGRWVHQR 230
Query: 150 FE------------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
+++++ +++ YA CG L +A +F + ++++VSWNSMI+ + +
Sbjct: 231 IRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQ 290
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
++A++L+ +M V PD+ T + VLS CA + L G V +++ K GI D++
Sbjct: 291 YERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISL 350
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 101/192 (52%), Gaps = 14/192 (7%)
Query: 53 FDPY---SASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI 105
+DP+ S S + A+ + L+ AR +F+++PQ N+ +WN++I AY+ +
Sbjct: 236 YDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQ 295
Query: 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSL 160
++ +F + + S +P++ T V+ A +GQ +H D+ ++ +L
Sbjct: 296 EALDLFFDM-WTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATAL 354
Query: 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPD 219
+ YA G+L A +F + KKDVV W SMI+G G +A+ +++ M E ++ PD
Sbjct: 355 LDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPD 414
Query: 220 EVTMVVVLSACA 231
+T + VL AC+
Sbjct: 415 HITYIGVLFACS 426
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 40/87 (45%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
GD+ A V I V WNSMI GFV ++ LYR+M PD T VL
Sbjct: 52 GDINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVL 111
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMD 254
AC D + G + S I K+G + D
Sbjct: 112 KACCVIADQDCGKCIHSCIVKSGFEAD 138
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 138/270 (51%), Gaps = 54/270 (20%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
LK+IH++ + T +P +K+ + C F + YAR++FD IP+P++++WN + +
Sbjct: 29 HLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKG 88
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS P ++L+++ + P+ +T PF+ K R V ++G+ +H +
Sbjct: 89 YSRIACPKLGVSLYLEMLERNVK-PDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDS 147
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF------------VEGGF 200
++ N+LI+ Y++CG + MA +F M K DVV+WN+MISG+ + GF
Sbjct: 148 NVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGF 207
Query: 201 ------------------------------------FEKAIELYREMEVENVKPDEVTMV 224
+++A+ L+REM+ +KPDE TMV
Sbjct: 208 VNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMV 267
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
VL+ACA+ LE G W+ ++I+KN +K D
Sbjct: 268 SVLTACAQLGALELGEWIRTYIDKNKVKND 297
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 89/165 (53%), Gaps = 6/165 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++ ARK F ++P+ + +W +I Y + ++ M+F ++ S P+EFT+ V
Sbjct: 211 GQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREM-QTSKIKPDEFTMVSV 269
Query: 131 IKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A+ +G+ I + +D + N+LI Y CG++ MA +F + ++D
Sbjct: 270 LTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDK 329
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+W +M+ G G E+A+ ++ +M +V PDEVT V VLSAC
Sbjct: 330 FTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSAC 374
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 140/283 (49%), Gaps = 38/283 (13%)
Query: 9 ISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS 68
+++P P+ ++ N + + ++LK+IHA ++ T D +AS++ C S
Sbjct: 11 VTVPAIPSSGFVSGNTCLRLIDTRCSTMRELKQIHANLIKTGLISDTVAASRVLAFCCAS 70
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTL 127
S YA +F +I N + WNT+IR +S S P + IF+ ++ +SP P T
Sbjct: 71 P-SDRNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTY 129
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
P V KA A R G+ +HG EDD I N+++H Y CG L A+ +FV +
Sbjct: 130 PSVFKAYASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMG 189
Query: 183 KDVVSWN-------------------------------SMISGFVEGGFFEKAIELYREM 211
DVV+WN SMISGFV G F+ A+E++REM
Sbjct: 190 FDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREM 249
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ +VKPD TMV +L+ACA E G W+ +I +N +++
Sbjct: 250 QERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELN 292
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L+ ++ A+K+FD++PQ N +WN++I + + + +F ++ P+ F
Sbjct: 201 GLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREM-QERDVKPDGF 259
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ ++ A A G+ IH FE + ++ +LI Y CG VF
Sbjct: 260 TMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECA 319
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
K + WNSMI G G E+A++L+ E+E ++PD V+ + VL+ACA
Sbjct: 320 PTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACA 370
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 125/234 (53%), Gaps = 38/234 (16%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
HAQM+ T Y+ SKL C +S F L YA +F+ +PNL WNT++R +SS
Sbjct: 2 HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-------------- 147
+ + +++++V + + PN +T PF++K+ A+ F G+ IH
Sbjct: 62 SDLVSPLEMYVRMV-SXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120
Query: 148 -----------GMFED-----------DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
G ED D+V +LI YA GD+ A VF I ++DV
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
VSWN+MI+G+VE +E+A+EL++EM NV+PDE T+V VLSACA+ +E G
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELG 234
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 22/249 (8%)
Query: 21 TVNNGHQRHPHFLTNQKQLKR-IHAQMLS----------TDFFFDPYSASKLFTPCAL-- 67
T G Q H + +L R H ++S FD S + + AL
Sbjct: 98 TFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALIT 157
Query: 68 --STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
++ + ARK+FD I + ++ +WN +I Y + ++ +F +++ + P+E
Sbjct: 158 GYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMM-RTNVRPDEG 216
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED------DLVISNSLIHFYAVCGDLAMAYCVFVM 179
TL V+ A A+ +G+ IH + +D L I N+ I Y+ CGD+ +A +F
Sbjct: 217 TLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEG 276
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ KDVVSWN++I G+ +++A+ L++EM P++VTM+ VL ACA ++ G
Sbjct: 277 LSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIG 336
Query: 240 IWVSSHIEK 248
W+ +I+K
Sbjct: 337 RWIHVYIDK 345
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C +E A +F+ + ++ +WNTLI Y+ + ++ ++F +++ S
Sbjct: 260 LYSKCG-----DVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEML-RSGE 313
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMA 173
PN+ T+ V+ A A +G+ IH + L + SLI YA CGD+ A
Sbjct: 314 SPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAA 373
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+ VF + K + SWN+MI GF G A +L+ M ++PD++T+V +LSAC+
Sbjct: 374 HQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHS 433
Query: 234 RDLEFG 239
L+ G
Sbjct: 434 GLLDLG 439
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L A VF + +++ WN+M+ G +E+Y M P+ T +L +
Sbjct: 33 LPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKS 92
Query: 230 CAKKRDLEFGIWVSSHIEKNGIKMD 254
CAK + E G + + + K G ++D
Sbjct: 93 CAKSKTFEEGRQIHAQVMKLGCELD 117
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 140/262 (53%), Gaps = 36/262 (13%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN 87
RH K L +IHAQ ++T F D + AS++ + ALS S+ YAR +F +I +P+
Sbjct: 40 RHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPD 99
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
++ NTLIRAY+ S PI + + + ++ +S FP+ T P ++KA + R+G+AIH
Sbjct: 100 IFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIH 159
Query: 148 GM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF------------VMIG--------- 181
+ ++ +SN L+ YA CG + A VF +MIG
Sbjct: 160 SHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFK 219
Query: 182 ----------KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+DVVSW+ MI+G+V+ F++ + L+++M E ++P+E +V LSACA
Sbjct: 220 SARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACA 279
Query: 232 KKRDLEFGIWVSSHIEKNGIKM 253
+E G W+ ++E+ +++
Sbjct: 280 HLGAMEQGQWIERYMERKNVRL 301
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 6/169 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR+MF+ +P ++ +W+ +I Y + +F Q + PNE L + A A
Sbjct: 221 ARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLF-QDMMGEKIEPNESVLVNALSACA 279
Query: 136 RPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
GQ I E V + +LI Y+ CG + A VF + +K+V++W++
Sbjct: 280 HLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSA 339
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
MI+G G + A+ L+ +ME++ VKP+EVT + +L+AC+ + ++ G
Sbjct: 340 MINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEG 388
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+IHAQML T FFDP++ASK+ C+L SL+YAR +F QIP P YT N++IR
Sbjct: 3 QLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRG 62
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
+ + Q ++F Q + P+ +T P + K+ + G+ IH F
Sbjct: 63 CTDKNLH-QEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFAS 118
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY-REM 211
D N+L++ Y+ CG L A VF + K VVSW +MI + +A+ L+ R M
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ ENVKP+EVT+V VL+ACA+ RDL + +I+++G
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHG 217
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 7/228 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N + K+IH F D Y+ + L S L ARK+FD++ + +W T+
Sbjct: 100 NSSEGKQIHCHSTKLGFASDTYAQNTLMN--MYSNCGCLVSARKVFDKMEDKTVVSWATM 157
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD- 153
I ++ D+P ++ +F +++ + PNE TL V+ A AR + + IH ++
Sbjct: 158 IGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHG 217
Query: 154 ----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+V++ L+ Y CG + +A +F +K++ SWN MI+G VE +E+A+ L+R
Sbjct: 218 FGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFR 277
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
EM+ + +K D+VTM +L AC LE G W+ ++I+K I +D+
Sbjct: 278 EMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVAL 325
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 91/175 (52%), Gaps = 6/175 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++ AR +FD+ + NL++WN +I + ++ ++F ++ ++ T+ +
Sbjct: 236 GCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREM-QTKGIKGDKVTMASL 294
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A +G+ +H + D+ + +L+ YA CG + A VF + +KDV
Sbjct: 295 LLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDV 354
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++W ++I G G E A++ + EM ++ VKPD +T V VL+AC+ ++ GI
Sbjct: 355 MTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGI 409
>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 6/221 (2%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N +Q K IHA + + Y+ SKL + CALS SL YA +F QI PNL+ +NT
Sbjct: 15 SNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNT 74
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------ 147
LIRAYS S P + F ++ + P++ T PF+I A + +G+ IH
Sbjct: 75 LIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKN 134
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
G+ D + +L+ FYA C + A +F I DVV WN +++G+V G +A+
Sbjct: 135 GVASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNA 194
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+R M V V+PDE + L CA+ L+ G W+ ++ K
Sbjct: 195 FRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTK 235
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD+IP ++ WN L+ Y ++ F ++ S P+EF L +K A
Sbjct: 160 ARKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLV-SGVEPDEFCLTTALKGCA 218
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ + G+ IH E D+ I +L+ YA CG + + VF + K++V SW+
Sbjct: 219 QLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWS 278
Query: 190 SMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACA 231
+MI GF G KA++ M+VE+ ++PD V ++ V+ ACA
Sbjct: 279 AMIGGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACA 321
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 130 VIKAAARPVQFRVGQAIHGMF-EDDLVISN----SLIHFYAVC--GDLAMAYCVFVMIGK 182
I A R +AIH +F + L ++N LI F A+ G L+ A +F I
Sbjct: 7 CISLAQSCSNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQN 66
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
++ ++N++I + + A+ ++ M + ENV PD+ T ++SAC + G
Sbjct: 67 PNLFAYNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQ 126
Query: 242 VSSHIEKNGI 251
+ + + KNG+
Sbjct: 127 IHNWVLKNGV 136
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 131/260 (50%), Gaps = 37/260 (14%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N + LK IHA ML T FFD ++AS+L C ST + L YA ++ QI PNL+ +N
Sbjct: 28 SNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNA 87
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR----PVQFRV-GQAIHG 148
LIR S+S+ P SF +++ + P+ T PF++KA A+ P+ + GQAI
Sbjct: 88 LIRGCSTSENPENSFHYYIKAL-RFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKH 146
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS--------------------- 187
FE D + NSL+H YA GD+ A VF + + DVVS
Sbjct: 147 GFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELF 206
Query: 188 ----------WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
W++MISG+ FEKA+E + ++ E V +E MV V+S+CA L
Sbjct: 207 DRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALA 266
Query: 238 FGIWVSSHIEKNGIKMDLTF 257
G ++ +N + ++L
Sbjct: 267 MGEKAHEYVMRNKLSLNLIL 286
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 97/182 (53%), Gaps = 12/182 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
AR++FD++P+ NL TW+T+I Y+ + ++ +++F + + NE + VI
Sbjct: 202 ARELFDRMPERNLVTWSTMISGYARNNCFEKAVETF----EALQAEGVVANETVMVGVIS 257
Query: 133 AAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ A +G+ H +L++ +++ YA CG++ A VF + +KDV+
Sbjct: 258 SCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLC 317
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W ++I+G G+ EKA+ + EM + P ++T VL+AC+ +E G+ + ++
Sbjct: 318 WTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMK 377
Query: 248 KN 249
++
Sbjct: 378 RD 379
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 134/271 (49%), Gaps = 43/271 (15%)
Query: 27 QRHP-----HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMF 80
+ HP H + L+ IHAQM+ T Y+ SKL C LS F L YA +F
Sbjct: 1 RNHPSLSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVF 60
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
D I +P L WNT+ R ++ S +P+ + +++ +V + PN +T PF++K+ A+ F
Sbjct: 61 DTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMV-SLGLLPNSYTFPFLLKSCAKSXAF 119
Query: 141 RVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM---- 191
+ GQ +HG F+ DL I SLI Y G L A V +DVVS+ ++
Sbjct: 120 KEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGY 179
Query: 192 ---------------------------ISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
ISG+ E G +++A+EL+++M NV+PDE TMV
Sbjct: 180 ASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMV 239
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
VLSACA+ +E G V S I +G +L
Sbjct: 240 TVLSACAQSGSIELGRQVHSWINDHGFGXNL 270
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 112/200 (56%), Gaps = 8/200 (4%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D S + L T ++ +E A KMFD+IP ++ +WN I Y+ + ++ +F +
Sbjct: 168 DVVSYTALIT--GYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKK 225
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCG 168
++ + P+E T+ V+ A A+ +G+ +H D +L I N+LI Y+ CG
Sbjct: 226 MM-KTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCG 284
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
+L A +F + KDV+SWN++I G+ +++A+ L+++M KP++VTM+ +LS
Sbjct: 285 ELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILS 344
Query: 229 ACAKKRDLEFGIWVSSHIEK 248
ACA ++ G W+ +I+K
Sbjct: 345 ACAHLGAIDIGRWIHVYIDK 364
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C LE A +F + ++ +WNTLI Y+ + ++ ++F Q + S
Sbjct: 279 LYSKCG-----ELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLF-QDMLRSGE 332
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMA 173
PN+ T+ ++ A A +G+ IH + L + SLI YA CGD+ A
Sbjct: 333 KPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 392
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF + + + SWN+MI GF G A +++ M ++PD++T V +LSAC+
Sbjct: 393 QQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452
Query: 234 RDLEFG 239
L+ G
Sbjct: 453 GMLDLG 458
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 138/261 (52%), Gaps = 19/261 (7%)
Query: 4 LSTPVISIPRH---PNPTTLTVNNGHQRHP----HFLTNQKQLKRIHAQMLSTDFFFDPY 56
LST + + P PN L + H+ P +LK++H+Q+ P
Sbjct: 7 LSTLIPATPTSVALPNQNELKILTKHRSSPTGSFKKCKTMTELKQLHSQITKNGLNHHPL 66
Query: 57 SASKLFTPCA-LSTFSSLEYARKMFDQIPQPNL-----YTWNTLIRAYSSSDEPIQSFMI 110
S + L + C + TF SLEYA+K + + N Y +++LIR +S+ ++ ++
Sbjct: 67 SLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVV 126
Query: 111 FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA 165
F QL+ P+ FT PFV+ A + G +HG FE D+ + NSLIHFY
Sbjct: 127 FRQLMCMGA-VPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYG 185
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
CG++ VF + +++VVSW S+I G+ + G +++A+ L+ EM ++P+ VTMV
Sbjct: 186 ECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVG 245
Query: 226 VLSACAKKRDLEFGIWVSSHI 246
V+SACAK +DL+ G V + I
Sbjct: 246 VISACAKLQDLQLGEQVCTCI 266
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 37/221 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+++ ARK+FD+ NL +NT++ Y + + +++ + P P+ T+
Sbjct: 289 GAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPR-PDRITMLSA 347
Query: 131 IKAAARPVQFRVGQAIHG------------------------------------MFEDDL 154
+ A + G+ HG M
Sbjct: 348 VSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTR 407
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V NSLI + GD+ A+ +F + D+VSWN+MI V+ F++AIEL+R M+ E
Sbjct: 408 VSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSE 467
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ D+VTMV V SAC L+ W+ +I+K I D+
Sbjct: 468 GITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDM 508
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 109/220 (49%), Gaps = 14/220 (6%)
Query: 41 RIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++H ++ F D + + L + C ++ R++FD++ + N+ +W +LI
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHFYGECG-----EIDCMRRVFDKMSERNVVSWTSLIGG 214
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y+ ++ +F ++V PN T+ VI A A+ ++G+ + E
Sbjct: 215 YAKRGCYKEAVSLFFEMV-EVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEV 273
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ ++ N+L+ Y CG + A +F K++V +N+++S +V G + + + EM
Sbjct: 274 NALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEML 333
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+PD +TM+ +SAC++ D+ G W ++ +NG++
Sbjct: 334 KHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLE 373
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E A K+F +P +L +WNT+I A ++ +F +++ + ++ T+ V
Sbjct: 421 GDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELF-RVMQSEGITADKVTMVGV 479
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
A + + IHG + D+ + +L+ +A CGD A VF + K+DV
Sbjct: 480 ASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDV 539
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+W + I G AIEL+ EM + +KPD V V +L+A + +E G
Sbjct: 540 SAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQG 593
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+S+I GF G KAI ++R++ PD T VLSAC K L G V I K
Sbjct: 108 SSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVK 167
Query: 249 NGIKMDLTFE 258
G + D+ E
Sbjct: 168 MGFERDMFVE 177
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 134/254 (52%), Gaps = 23/254 (9%)
Query: 13 RHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS 72
R T LT+ N H +L +IHA +L T +P +K FT + S +S
Sbjct: 14 RLTEQTILTLLNSH------CNTLSKLTQIHAFILKTGLQNNPLILTK-FTSTS-SNLNS 65
Query: 73 LEYARKMF------DQIPQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
+ YA P P + + +NTLIRAYS + + + +F + + PN+
Sbjct: 66 IHYATSFLFPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNK 125
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC--VF 177
FT PFV+K A R+G+ +HG FE+D+ + N+LIH Y G+ + VF
Sbjct: 126 FTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVF 185
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
K D V+W++MI+GFV G +A++L+REM+V V PDE+TMV VLSACA LE
Sbjct: 186 DDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALE 245
Query: 238 FGIWVSSHIEKNGI 251
G WV S++EK I
Sbjct: 246 LGKWVESYVEKKNI 259
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 7/190 (3%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C L E+A K+FD P+ + TW+ +I + ++ +F ++ P+E
Sbjct: 171 CCLGE-DGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMG-VCPDE 228
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVM 179
T+ V+ A A +G+ + E + + N+LI +A CG++ A +F
Sbjct: 229 ITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQ 288
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ + +VSW S+I+G G A+ L+ EM + PD+V + VLSAC+ ++ G
Sbjct: 289 MDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKG 348
Query: 240 IWVSSHIEKN 249
+ +E+N
Sbjct: 349 RYYFGSMERN 358
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 125/234 (53%), Gaps = 38/234 (16%)
Query: 59 SKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117
SKL C LS F YA +F I +PN WNT++R Y+ S +P+ + +++ ++ +
Sbjct: 1 SKLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMI-S 59
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAM 172
PN +T PF++K+ A+ F GQ IHG +E DL + SLI YA G L
Sbjct: 60 LGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLED 119
Query: 173 AYCVF-------------VMIGK------------------KDVVSWNSMISGFVEGGFF 201
A+ VF ++ G KDVVSWN+MISG+ E G +
Sbjct: 120 AHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSY 179
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++A+EL++EM NV+PDE TMV VLSACA+ R +E G V S I+ +G +L
Sbjct: 180 KEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNL 233
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 112/200 (56%), Gaps = 8/200 (4%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D S + L T A S ++ A++MFD+IP ++ +WN +I Y+ + ++ +F +
Sbjct: 131 DVVSYTALITGYASS--GNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKE 188
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCG 168
++ + P+E T+ V+ A A+ +G+ +H +D +L I N+LI Y+ CG
Sbjct: 189 MM-KTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCG 247
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
+ A +F + KDVVSWN++I G+ +++A+ L++EM P++VT+V +L
Sbjct: 248 QVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILP 307
Query: 229 ACAKKRDLEFGIWVSSHIEK 248
ACA ++ G W+ +I+K
Sbjct: 308 ACAHLGAIDIGRWIHVYIDK 327
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C +E A +F+ + ++ +WNTLI Y+ + ++ ++F +++ S
Sbjct: 242 LYSKCG-----QVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEML-RSGE 295
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMA 173
PN+ T+ ++ A A +G+ IH + L + SLI YA CGD+ A
Sbjct: 296 SPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAA 355
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+ VF + K + SWN+MI GF G +L+ M ++PD++T V +LSAC+
Sbjct: 356 HQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHS 415
Query: 234 RDLEFG 239
L+ G
Sbjct: 416 GKLDLG 421
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 129/226 (57%), Gaps = 11/226 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+ ++HA++L T P + +L CA S +SL YAR +FD I P+ + +NT+IRA
Sbjct: 3 HIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRA 62
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
++ D + + + P+ FT PFV+KA AR + G +H + F+
Sbjct: 63 HA--DSSPSFSLSLFSKMAMAGVSPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDS 117
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N LIHFY CG L A VF + ++D+VSW+SMI+ F + GF +A+ L++ M+
Sbjct: 118 DVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQ 177
Query: 213 -VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
V VKPDEV ++ V+SA + DLE G W+ I +NG++ ++
Sbjct: 178 LVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSL 223
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 98/195 (50%), Gaps = 7/195 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H+ + F D Y + L F L++A K+F+++P+ +L +W+++I ++ +
Sbjct: 106 LHSLLFKLGFDSDVYVQNGLIHFYGCCGF--LDFALKVFEEMPERDLVSWSSMIACFAKN 163
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
++ +F ++ P+E + V+ A + +G+ I G E + +
Sbjct: 164 GFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSL 223
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+L+ ++ CG + + VF +G+++V++W ++I+G G +A+ ++ EM
Sbjct: 224 GTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGF 283
Query: 217 KPDEVTMVVVLSACA 231
+PD VT VL AC+
Sbjct: 284 QPDHVTFTGVLVACS 298
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 128/226 (56%), Gaps = 8/226 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASK--LFTPCALSTFSSLEYARKMFDQIPQP-NLYTWNTL 94
+L++IHA + K +F +L + + YA K+F +I +P N++ WNTL
Sbjct: 32 KLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTL 91
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
IR Y+ I +F ++ ++ + P+ T PF+IKA R+G+ IH +
Sbjct: 92 IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F + + NSL+H YA CGD+A AY VF + +KD+V+WNS+I+GF E G E+A+ LY
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYT 211
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EM + +KPD T+V +LSACAK L G V ++ K G+ +L
Sbjct: 212 EMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNL 257
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 94/164 (57%), Gaps = 11/164 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAA 134
A K+FD++P+ +L WN++I ++ + +P ++ ++ ++ NS P+ FT+ ++ A
Sbjct: 175 AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGFTIVSLLSAC 232
Query: 135 ARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A+ +G+ +H G+ + L SN L+ YA CG + A +F + K+ VSW
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRN-LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSW 291
Query: 189 NSMISGFVEGGFFEKAIELYREME-VENVKPDEVTMVVVLSACA 231
S+I G GF ++AIEL++ ME E + P E+T V +L AC+
Sbjct: 292 TSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 138/233 (59%), Gaps = 20/233 (8%)
Query: 39 LKRIHAQMLSTDFFFDPYSA-----SKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
L++IHA++L+ P S+ SK+ + ALS F + +YARK+F QIP P ++ +N+
Sbjct: 4 LRQIHARILT---HVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNS 60
Query: 94 LIRA--YSS--SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+IR Y+ S EPI +F +V PN FT+ FV+KA + + G+ IH
Sbjct: 61 VIRGCLYTKIPSKEPIH---LFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQ 117
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
F + +SL++FY+ C ++ +A VF I ++++V W++M+SG+ G +A
Sbjct: 118 ILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEA 177
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ ++REM+V ++PDEV++V VLSACA L+ G WV ++I+K I +DL
Sbjct: 178 LIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLEL 230
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 13/225 (5%)
Query: 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL 73
+PNP T T+ + + ++ K+IHAQ+L + F PY S L S +
Sbjct: 87 YPNPNTFTMAFV-LKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVN--FYSKCEEI 143
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVI 131
ARK+FD+I + NL W+ ++ Y+ ++ ++F +Q+V P+E +L V+
Sbjct: 144 TIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVV---GIEPDEVSLVGVL 200
Query: 132 KAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A A +G+ +H M DL ++ +LI+ YA CG + A +F + KD
Sbjct: 201 SACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSK 260
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+W+SMI G G E A+ ++ ME KP+ VT + +LSACA
Sbjct: 261 AWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACA 305
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 128/226 (56%), Gaps = 8/226 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASK--LFTPCALSTFSSLEYARKMFDQIPQP-NLYTWNTL 94
+L++IHA + K +F +L + + YA K+F +I +P N++ WNTL
Sbjct: 32 KLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTL 91
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
IR Y+ I +F ++ ++ + P+ T PF+IKA R+G+ IH +
Sbjct: 92 IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F + + NSL+H YA CGD+A AY VF + +KD+V+WNS+I+GF E G E+A+ LY
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYT 211
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EM + +KPD T+V +LSACAK L G V ++ K G+ +L
Sbjct: 212 EMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNL 257
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 94/164 (57%), Gaps = 11/164 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAA 134
A K+FD++P+ +L WN++I ++ + +P ++ ++ ++ NS P+ FT+ ++ A
Sbjct: 175 AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGFTIVSLLSAC 232
Query: 135 ARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A+ +G+ +H G+ + L SN L+ YA CG + A +F + K+ VSW
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRN-LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSW 291
Query: 189 NSMISGFVEGGFFEKAIELYREME-VENVKPDEVTMVVVLSACA 231
S+I G GF ++AIEL++ ME E + P E+T V +L AC+
Sbjct: 292 TSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 131/257 (50%), Gaps = 37/257 (14%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+LK++HA ++S D SK+ ALS + Y+ ++F Q+ P +++WNT+IR
Sbjct: 29 ELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQLSSPTIFSWNTIIRG 88
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----ED 152
YS+S PIQS IFL+++ P+ T PF++KA+AR + G ++H E
Sbjct: 89 YSNSKNPIQSLSIFLKML-RLGVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHES 147
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM--------------------- 191
D I NSLIH YA CG+ A VF I +K+VVSWNSM
Sbjct: 148 DRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMS 207
Query: 192 ----------ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
I G+V+ G + +A+ ++ +M+ K +EVTMV V ACA LE G
Sbjct: 208 EKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRM 267
Query: 242 VSSHIEKNGIKMDLTFE 258
+ +I NG+ + L +
Sbjct: 268 IYKYIVDNGLPLTLVLQ 284
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 47/240 (19%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L NQ+ +HA ++ T D + + L + C S +A+K+FD I Q N+
Sbjct: 127 LLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSM-----WAQKVFDSIQQKNVV 181
Query: 90 TWNTLIRAYSSSDEPI-------------------------------QSFMIFLQLVYNS 118
+WN+++ Y+ E + ++ IF ++
Sbjct: 182 SWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAG 241
Query: 119 PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMA 173
P NE T+ V A A G+ I+ D+ LV+ SL+ YA CG + A
Sbjct: 242 PK-ANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEA 300
Query: 174 YCVFVMIGKK--DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+F + K DV+ WN++I G G E++++L++EM++ + PDEVT + +L+ACA
Sbjct: 301 LLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACA 360
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 140/271 (51%), Gaps = 43/271 (15%)
Query: 27 QRHP-----HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMF 80
+ HP H + L+ IHAQM+ T Y+ S+L C LS F L YA +F
Sbjct: 1 RNHPSLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVF 60
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
+ I +PNL WNT+ R ++ S +P+ + +++ ++ + PN +T PF++K+ A+
Sbjct: 61 ETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMI-SLGLLPNSYTFPFLLKSCAKLKVS 119
Query: 141 RVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF-------------VMIGK 182
+ GQ IHG +E DL + SLI Y G A+ VF ++ G
Sbjct: 120 KEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGY 179
Query: 183 ------------------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
KDVVSWN++ISG+ + G ++A++L++EM NVKPDE TMV
Sbjct: 180 ASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMV 239
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V+SACA+ ++ G V S I+ +G+ +L
Sbjct: 240 TVVSACAQSGSIQLGRQVHSWIDDHGLGSNL 270
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 132/244 (54%), Gaps = 21/244 (8%)
Query: 25 GHQRHPHFLTNQKQLK-RIHAQMLS----------TDFFFDPYSASKLFTPCALST-FSS 72
G Q H H L +L +H ++S FD S + + AL T ++S
Sbjct: 122 GQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYAS 181
Query: 73 ---LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+E A+KMFD+IP ++ +WN +I Y+ + ++ +F +++ + P+E T+
Sbjct: 182 RGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMM-KTNVKPDESTMVT 240
Query: 130 VIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A A+ ++G+ +H +D +L I N+LI Y+ CG++ A +F + KD
Sbjct: 241 VVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKD 300
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
V+SWN+MI G+ +++A+ L++EM P++VTM+ +L ACA+ ++FG W+
Sbjct: 301 VISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHV 360
Query: 245 HIEK 248
+I+K
Sbjct: 361 YIDK 364
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C +E A +F + ++ +WNT+I Y+ + ++ ++F +++ S
Sbjct: 279 LYSKCG-----EVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEML-RSGE 332
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMA 173
PN+ T+ ++ A A+ G+ IH + + + SLI YA CGD+ A
Sbjct: 333 NPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAA 392
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+ VF + + + + N+MI GF G A +++ M ++PD++T V +LSAC+
Sbjct: 393 HQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452
Query: 234 RDLEFG 239
L+ G
Sbjct: 453 GMLDLG 458
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 141/273 (51%), Gaps = 55/273 (20%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF--SSLEYARKMFDQIPQPNLYTWNTL 94
+ L +IHA + + D +A+++ CA S L+YA K+F+Q+PQ N ++WNT+
Sbjct: 30 RDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTI 89
Query: 95 IRAYSSSDE--PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
IR +S SDE + + +F +++ + PN FT P V+KA A+ + + G+ IHG+
Sbjct: 90 IRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALK 149
Query: 150 --FEDDLVISNSLIHFYAVC---------------------------------------- 167
F D + ++L+ Y +C
Sbjct: 150 YGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMID 209
Query: 168 -----GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV-ENVKPDEV 221
GD A +F + ++ VVSWN+MISG+ + GFF+ A+E++REM+ E+++P+ V
Sbjct: 210 GYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYV 269
Query: 222 TMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
T+V VL A ++ LE G W+ + E +GI++D
Sbjct: 270 TLVSVLPAVSRLGSLELGEWLHLYAEDSGIRID 302
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+ AR +FD++ Q ++ +WNT+I YS + + +F ++ PN TL
Sbjct: 214 LGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVS 273
Query: 130 VIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A +R +G+ +H ED D V+ ++LI Y+ CG + A VF + +++
Sbjct: 274 VLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPREN 333
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
V++W++MI+GF G AI+ + +M V+P +V + +L+AC+ +E G
Sbjct: 334 VITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEG 388
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 143/262 (54%), Gaps = 12/262 (4%)
Query: 4 LSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQK---QLKRIHAQMLSTDFFFDPYSASK 60
LS V++ P+ L + + P L N K +LK H + D + +K
Sbjct: 10 LSPMVLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITK 69
Query: 61 LFT-PCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS 118
L C L T SL +A+++F+ + +N+LIR Y+SS ++ ++FL+++ NS
Sbjct: 70 LVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMM-NS 128
Query: 119 PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMA 173
P+++T PF + A A+ G IHG+ + DL + NSL+HFYA CG+L A
Sbjct: 129 GISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSA 188
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL-YREMEVENVKPDEVTMVVVLSACAK 232
VF + +++VVSW SMI G+ F + A++L +R + E V P+ VTMV V+SACAK
Sbjct: 189 RKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAK 248
Query: 233 KRDLEFGIWVSSHIEKNGIKMD 254
DLE G V + I +GI+++
Sbjct: 249 LEDLETGEKVYAFIRNSGIEVN 270
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 105/203 (51%), Gaps = 11/203 (5%)
Query: 58 ASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
A LF +L F L+ ARK+FD++ + N+ +W ++I Y+ D + +F +
Sbjct: 166 AKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFR 225
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVC 167
+V + PN T+ VI A A+ G+ ++ G+ +DL++S +L+ Y C
Sbjct: 226 MVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS-ALVDMYMKC 284
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
+ +A +F G ++ N+M S +V G +A+ ++ M V+PD ++M+ +
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAI 344
Query: 228 SACAKKRDLEFGIWVSSHIEKNG 250
S+C++ R++ +G ++ +NG
Sbjct: 345 SSCSQLRNILWGKSCHGYVLRNG 367
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 38/224 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++++ A+++FD+ NL N + Y ++ +F L+ +S P+ ++
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVF-NLMMDSGVRPDRISMLSA 343
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVC------------------ 167
I + ++ G++ HG FE I N+LI Y C
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403
Query: 168 -------------GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV- 213
G++ A+ F + +K++VSWN++ISG V+G FE+AIE++ M+
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
E V D VTM+ + SAC L+ W+ +IEKNGI++D+
Sbjct: 464 EGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRL 507
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ A + F+ +P+ N+ +WNT+I ++ +F + + T+ +
Sbjct: 419 VDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIAS 478
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + + I+ E D+ + +L+ ++ CGD A +F + +DV +
Sbjct: 479 ACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSA 538
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
W + I G E+AIEL+ +M + +KPD V V L+AC+
Sbjct: 539 WTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACS 582
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+NS+I G+ G +AI L+ M + PD+ T LSACAK R GI + I
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 248 KNGIKMDL 255
K G DL
Sbjct: 162 KMGYAKDL 169
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 143/262 (54%), Gaps = 12/262 (4%)
Query: 4 LSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQK---QLKRIHAQMLSTDFFFDPYSASK 60
LS V++ P+ L + + P L N K +LK H + D + +K
Sbjct: 10 LSPMVLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITK 69
Query: 61 LFT-PCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS 118
L C L T SL +A+++F+ + +N+LIR Y+SS ++ ++FL+++ NS
Sbjct: 70 LVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMM-NS 128
Query: 119 PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMA 173
P+++T PF + A A+ G IHG+ + DL + NSL+HFYA CG+L A
Sbjct: 129 GISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSA 188
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL-YREMEVENVKPDEVTMVVVLSACAK 232
VF + +++VVSW SMI G+ F + A++L +R + E V P+ VTMV V+SACAK
Sbjct: 189 RKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAK 248
Query: 233 KRDLEFGIWVSSHIEKNGIKMD 254
DLE G V + I +GI+++
Sbjct: 249 LEDLETGEKVYAFIRNSGIEVN 270
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 105/203 (51%), Gaps = 11/203 (5%)
Query: 58 ASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
A LF +L F L+ ARK+FD++ + N+ +W ++I Y+ D + +F +
Sbjct: 166 AKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFR 225
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVC 167
+V + PN T+ VI A A+ G+ ++ G+ +DL++S +L+ Y C
Sbjct: 226 MVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS-ALVDMYMKC 284
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
+ +A +F G ++ N+M S +V G +A+ ++ M V+PD ++M+ +
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAI 344
Query: 228 SACAKKRDLEFGIWVSSHIEKNG 250
S+C++ R++ +G ++ +NG
Sbjct: 345 SSCSQLRNILWGKSCHGYVLRNG 367
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 38/224 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++++ A+++FD+ NL N + Y ++ +F L+ +S P+ ++
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVF-NLMMDSGVRPDRISMLSA 343
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVC------------------ 167
I + ++ G++ HG FE I N+LI Y C
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403
Query: 168 -------------GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV- 213
G++ A+ F + +K++VSWN++ISG V+G FE+AIE++ M+
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
E V D VTM+ + SAC L+ W+ +IEKNGI++D+
Sbjct: 464 EGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRL 507
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ A + F+ +P+ N+ +WNT+I ++ +F + + T+ +
Sbjct: 419 VDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIAS 478
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + + I+ E D+ + +L+ ++ CGD A +F + +DV +
Sbjct: 479 ACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSA 538
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
W + I G E+AIEL+ +M + +KPD V V L+AC+
Sbjct: 539 WTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACS 582
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+NS+I G+ G +AI L+ M + PD+ T LSACAK R GI + I
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 248 KNGIKMDL 255
K G DL
Sbjct: 162 KMGYAKDL 169
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 139/283 (49%), Gaps = 71/283 (25%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK +HAQ++ + + KL + CA+ L+YA++MFDQIPQPN + +N+LIR
Sbjct: 2 RGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIR 61
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-------- 148
YS+SD+PI + ++F +++ S PNEFTLPFV+KA + +HG
Sbjct: 62 GYSNSDDPIDAVLLFRRMIC-SGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120
Query: 149 ------------------------MFED-------DLVISNSLIHFYAVCGDLAMAYCVF 177
+F+D D+++ N+L+ YA CG+L A +F
Sbjct: 121 SLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIF 180
Query: 178 ------------VMIGK-------------------KDVVSWNSMISGFVEGGFFEKAIE 206
MI K+VVSWNSMIS ++ G + +A++
Sbjct: 181 DRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALD 240
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
L+ +M V PDE T+V +L+AC++ DL G + ++I N
Sbjct: 241 LFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSN 283
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + S+E AR++FDQ+P N+ +WN++I Y + ++ +F ++ NS P+E
Sbjct: 197 AYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKM-RNSRVVPDEA 255
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMI 180
TL ++ A ++ +G+ IH + + + NSLI YA CG + A +F+ +
Sbjct: 256 TLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEM 315
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
K++VSWN +I G +AI+L+ EM+ + PDE+T+ +LSAC+ ++ G+
Sbjct: 316 PGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGL 375
Query: 241 W 241
+
Sbjct: 376 Y 376
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 133/256 (51%), Gaps = 38/256 (14%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLI 95
+ L+ IHAQM+ T Y+ SKL C LS F L YA +F+ I +PNL WNT+
Sbjct: 4 QSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMF 63
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----- 150
R ++ S +P+ + +++ ++ + PN +T PF++K+ A+ F+ GQ IHG
Sbjct: 64 RGHALSSDPVSALKLYVCMI-SLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN--------------------- 189
+ DL + SLI Y G L A+ VF +DVVS+
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182
Query: 190 ----------SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+MISG+ E G +++A+EL+++M NV+PDE TMV V+SACA+ +E G
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242
Query: 240 IWVSSHIEKNGIKMDL 255
V S I+ +G +L
Sbjct: 243 RQVHSWIDDHGFGSNL 258
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 105/181 (58%), Gaps = 6/181 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A+KMFD+IP ++ +WN +I Y+ + ++ +F ++ + P+E T+ V+
Sbjct: 173 IENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM-KTNVRPDESTMVTVVS 231
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A+ +G+ +H +D +L I N+LI Y+ CG+L A +F + KDV+S
Sbjct: 232 ACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVIS 291
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN++I G+ +++A+ L++EM P++VTM+ +L ACA ++ G W+ +I+
Sbjct: 292 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID 351
Query: 248 K 248
K
Sbjct: 352 K 352
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C LE A +F+ +P ++ +WNTLI Y+ + ++ ++F +++ S
Sbjct: 267 LYSKCG-----ELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML-RSGE 320
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMA 173
PN+ T+ ++ A A +G+ IH + L + SLI YA CGD+ A
Sbjct: 321 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAA 380
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+ VF I K + SWN+MI GF G + + +++ M ++PD++T V +LSAC+
Sbjct: 381 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHS 440
Query: 234 RDLEFG 239
L+ G
Sbjct: 441 GMLDLG 446
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 128/248 (51%), Gaps = 42/248 (16%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
L+ IHAQM+ T Y+ SKL C LS F L YA +F+ I +PNL WNT+ R
Sbjct: 3 LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
++ S +P+ + +++ ++ + PN +T PF++K+ A+ FR GQ IHG ++
Sbjct: 63 HALSSDPVSALYLYVCMI-SLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN----------------------- 189
DL + SLI Y G L A VF +DVVS+
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIP 181
Query: 190 --------SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG-- 239
+MISG+ E G +++A+EL+++M NV+PDE TMV V+SACA+ +E G
Sbjct: 182 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 241
Query: 240 --IWVSSH 245
+W+ H
Sbjct: 242 VHLWIDDH 249
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 21/244 (8%)
Query: 25 GHQRHPHFLTNQKQLK-RIHAQMLS----------TDFFFDPYSASKLFTPCAL----ST 69
G Q H H L L +H ++S FD S + + AL ++
Sbjct: 107 GQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYAS 166
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+E A+K+FD+IP ++ +WN +I Y+ + ++ +F ++ + P+E T+
Sbjct: 167 RGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM-KTNVRPDESTMVT 225
Query: 130 VIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A A+ +G+ +H +D +L I N+LI Y+ CG++ A +F + KD
Sbjct: 226 VVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKD 285
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
V+SWN++I G+ +++A+ L++EM P++VTM+ +L ACA ++ G W+
Sbjct: 286 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHV 345
Query: 245 HIEK 248
+I K
Sbjct: 346 YINK 349
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C +E A +F+ + ++ +WNTLI Y+ + ++ ++F +++ S
Sbjct: 264 LYSKCG-----EVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML-RSGE 317
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMA 173
PN+ T+ ++ A A +G+ IH L + SLI YA CGD+ A
Sbjct: 318 SPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAA 377
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF + + + SWN+MI GF G A +L+ +M + PD++T V +LSAC+
Sbjct: 378 KQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHS 437
Query: 234 RDLEFG 239
L+ G
Sbjct: 438 GMLDLG 443
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 29/169 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E A+++FD + +L +WN +I ++ + +F +F ++ N P++ T +
Sbjct: 372 GDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNG-IDPDDITFVGL 430
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + +G+ I D I+ L H+ C+ ++G
Sbjct: 431 LSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYG----------CMIDLLG--------- 471
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G F++A E+ R M +E PD V +L AC ++E G
Sbjct: 472 ------HCGLFKEAKEMIRTMPME---PDGVIWCSLLKACKMHNNVELG 511
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 132/255 (51%), Gaps = 39/255 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQLK+I AQM+ T +P A+K T C L YA+++F+ I PN + WN +IR
Sbjct: 2 KQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIR 61
Query: 97 AYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
AYS+SDEP +F+ + Q++ +S P+ N +T PF+++A + +HG+ F
Sbjct: 62 AYSNSDEPELAFLSYQQMLSSSVPH--NSYTFPFLLRACRNLLAMGEALQVHGLVIKLGF 119
Query: 151 EDDLVISNSLIHFYAVC-------------------------------GDLAMAYCVFVM 179
D+ N+L+H YA+C GD+ AY VF+
Sbjct: 120 GSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLD 179
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ K+VVSW S+ISG VE G +A+ L EM+ + D V + +L+ACA L+ G
Sbjct: 180 MPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQG 239
Query: 240 IWVSSHIEKNGIKMD 254
W+ ++ NG+ +D
Sbjct: 240 RWLHFYVLNNGVDVD 254
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 39/236 (16%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H ++ F D ++ + L AL + AR++FD IP+ + +WN +I Y
Sbjct: 109 QVHGLVIKLGFGSDVFALNALLHVYALC--GEIHCARQLFDNIPERDAVSWNIMIDGYIK 166
Query: 101 SDEPIQSFMIFLQL------------------------------VYNSPYFPNEFTLPFV 130
S + ++ +FL + + N+ + + + +
Sbjct: 167 SGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASL 226
Query: 131 IKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI--GKK 183
+ A A G+ +H + D VI +L++ Y CGD+ A VF + +K
Sbjct: 227 LTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQK 286
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
DV W +MI GF G +A+E + M E ++P+ +T VL AC+ +E G
Sbjct: 287 DVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEG 342
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 9/229 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
+ + +KR+HA + + + Y+ SK+ A+ L +A K+FDQI P + WN
Sbjct: 463 IVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQ-PDLVFAHKVFDQIEAPTTFLWN 521
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----- 147
LIR + SD P + + F + P+ T PF++KA AR G+ +H
Sbjct: 522 ILIRGLAQSDAPADA-IAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITK 580
Query: 148 -GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
G+ D + +SNSLIH YA CG+L A VF + KDVVSWNS+I G+ + F+ +
Sbjct: 581 LGLLSD-IFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILA 639
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
L++ M+ E VK D+VTM+ V+SAC + D ++ +IE I++D+
Sbjct: 640 LFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDV 688
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 120/274 (43%), Gaps = 53/274 (19%)
Query: 21 TVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF 80
+N G Q H H I L +D F S L+ C +L YAR +F
Sbjct: 567 ALNEGEQMHNH----------ITKLGLLSDIFVSN-SLIHLYAACG-----NLCYARSVF 610
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
D++ ++ +WN+LI YS + + + +L+ N ++ T+ V+ A R +
Sbjct: 611 DEMVVKDVVSWNSLICGYSQCNR-FKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDY 669
Query: 141 RVGQAIHGMFED------------------------------------DLVISNSLIHFY 164
+ + ED ++V N++I Y
Sbjct: 670 SMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAY 729
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
A D+ A +F I KKD++SW+SMISG+ + F A+E++R+M+ VKPD + +
Sbjct: 730 AKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIA 789
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
V+S+CA L+ G WV ++ +N IK D E
Sbjct: 790 SVVSSCAHLGALDLGKWVHEYVRRNNIKADTIME 823
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 104/181 (57%), Gaps = 7/181 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+ + +EYAR +F+++P N+ +W+ +I Y+ + P+++ +F +++ P+E
Sbjct: 164 GFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEG-ISPSEI 222
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVF-VM 179
T+ V+ A + + +G+A+HG E D+ + NSLI YA G + + VF M
Sbjct: 223 TVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEM 282
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++++VSW S+ISGF G KA+EL+ +M ++P+ +T + VL AC+ +E G
Sbjct: 283 LDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQG 342
Query: 240 I 240
+
Sbjct: 343 V 343
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FDQIP+ +L +W+++I YS ++ + IF Q+ + P+ + V+ + A
Sbjct: 738 ARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQM-QRAKVKPDAIVIASVVSSCA 796
Query: 136 RPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ +H + D ++ NSLI Y CG A VF + +KD +SWNS
Sbjct: 797 HLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNS 856
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+I G GF ++++ L++ M E +P+ VT + VL ACA + +E G+
Sbjct: 857 IIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGL 906
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 42/216 (19%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A ++FD+ P P W+ L++AYS P + +F +++ + + F +KA A
Sbjct: 47 AHQVFDRRPTP----WHALLKAYSHGPHPQDALQLFRHARWHAA--DDTYAFTFALKACA 100
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R +HG+ FE + +L++ Y +CG LA + F + K+ VSWN
Sbjct: 101 GLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNV 160
Query: 191 MISGFVEGG-------FFEK------------------------AIELYREMEVENVKPD 219
+I+GF G FE+ A+ L+R M E + P
Sbjct: 161 VITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPS 220
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E+T++ V+ A + + G + + EK G+ D+
Sbjct: 221 EITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDV 256
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 123/219 (56%), Gaps = 8/219 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK IHA++L D Y + L CAL F S Y++ +F Q+ +PN++ WNT+IR
Sbjct: 31 QLKHIHARLLRLHLDQDNYLLN-LILCCALD-FGSTNYSKLVFSQVKEPNIFLWNTMIRG 88
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
S D + ++ + + PN FT+PFV+KA AR + R+G IH + ++
Sbjct: 89 LVSKDCFDDAIHLYGSM-RGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDH 147
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + SL+ Y C + A VF I K+VVSW ++I+G++ G F +AI ++++
Sbjct: 148 DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+KPD ++V VL+ACA+ D G W+ +I +G+
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 20/220 (9%)
Query: 41 RIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+IH+ ++ + D + S L+ C + + A K+FD IP N+ +W +I
Sbjct: 135 KIHSLLVKAGYDHDVFVKTSLLSLYVKC-----DNFDDALKVFDDIPDKNVVSWTAIITG 189
Query: 98 YSSSD---EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-- 152
Y SS E I +F L++ P+ F+L V+ A AR G+ I D
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLK----PDSFSLVKVLAACARLGDCTSGEWIDRYISDSG 245
Query: 153 ---DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
++ ++ SL+ Y CG+L A +F + +KD+VSW++MI G+ G ++A++L+
Sbjct: 246 MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFF 305
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+M+ EN+KPD TMV VLSACA L+ GIW SS +++N
Sbjct: 306 QMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRN 345
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+LE A +F +P+ ++ +W+T+I+ Y+ + P Q+ +F Q+ + P+ +T+ V
Sbjct: 264 GNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM-QSENLKPDCYTMVGV 322
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A +G + + + +SN +LI Y+ CG + A+ +F + KKD
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDR 382
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
V WN+M+ G G + L+ +E ++PDE T + +L C
Sbjct: 383 VVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGC 427
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 158 NSLIHFYAVC----GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
N L++ C G + VF + + ++ WN+MI G V F+ AI LY M
Sbjct: 48 NYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRG 107
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
P+ T+ VL ACA+K D+ G+ + S + K G D+
Sbjct: 108 GGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDV 149
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 123/219 (56%), Gaps = 8/219 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK IHA++L D Y + L CAL F S Y++ +F Q+ +PN++ WNT+IR
Sbjct: 31 QLKHIHARLLRLHLDQDNYLLN-LILCCALD-FGSTNYSKLVFSQVKEPNIFLWNTMIRG 88
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
S D + ++ + + PN FT+PFV+KA AR + R+G IH + ++
Sbjct: 89 LVSKDCFDDAIHLYGSM-RGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDH 147
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + SL+ Y C + A VF I K+VVSW ++I+G++ G F +AI ++++
Sbjct: 148 DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+KPD ++V VL+ACA+ D G W+ +I +G+
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 20/220 (9%)
Query: 41 RIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+IH+ ++ + D + S L+ C + + A K+FD IP N+ +W +I
Sbjct: 135 KIHSLLVKAGYDHDVFVKTSLLSLYVKC-----DNFDDALKVFDDIPDKNVVSWTAIITG 189
Query: 98 YSSSD---EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-- 152
Y SS E I +F L++ P+ F+L V+ A AR G+ I D
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLK----PDSFSLVKVLAACARLGDCTSGEWIDRYISDSG 245
Query: 153 ---DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
++ ++ SL+ Y CG+L A +F + +KD+VSW++MI G+ G ++A++L+
Sbjct: 246 MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFF 305
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+M+ EN+KPD TMV VLSACA L+ GIW SS +++N
Sbjct: 306 QMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRN 345
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+LE A +F +P+ ++ +W+T+I+ Y+ + P Q+ +F Q+ + P+ +T+ V
Sbjct: 264 GNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM-QSENLKPDCYTMVGV 322
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A +G + + + +SN +LI Y+ CG + A+ +F + +KD
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDR 382
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
V WN+M+ G G + L+ +E ++PDE T + +L C
Sbjct: 383 VVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGC 427
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 158 NSLIHFYAVC----GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
N L++ C G + VF + + ++ WN+MI G V F+ AI LY M
Sbjct: 48 NYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRG 107
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
P+ T+ VL ACA+K D+ G+ + S + K G D+
Sbjct: 108 GGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDV 149
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 11/226 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+ ++HA++L T P + +L CA S +SL YAR +FD I P+ + +NT+IRA
Sbjct: 3 HIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRA 62
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
++ D + + + P+ FT PFV+KA AR + G +H + F+
Sbjct: 63 HA--DSSPSFSLSLFSKMTMAGVSPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDS 117
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N LIHFY CG L A F + ++D+VSW+SMI+ F + GF +A+ L++ M+
Sbjct: 118 DVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQ 177
Query: 213 -VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
V VKPDEV ++ V+SA + DLE G W+ I +NG++ ++
Sbjct: 178 LVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSL 223
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 97/195 (49%), Gaps = 7/195 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H+ + F D Y + L F L++A K F+++P+ +L +W+++I ++ +
Sbjct: 106 LHSLLFKLGFDSDVYVQNGLIHFYGCCGF--LDFALKAFEEMPERDLVSWSSMIACFAKN 163
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
++ +F ++ P+E + V+ A + +G+ I G E + +
Sbjct: 164 GFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSL 223
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+L+ ++ CG + + VF +G+++V++W ++I+G G +A+ ++ EM
Sbjct: 224 GTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGF 283
Query: 217 KPDEVTMVVVLSACA 231
+PD VT VL AC+
Sbjct: 284 QPDHVTFTGVLVACS 298
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 139/272 (51%), Gaps = 54/272 (19%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF--SSLEYARKMFDQIPQPNLYTWNTL 94
+ L +IHA + + D +A+++ CA S L+YA K+F+Q+PQ N ++WNT+
Sbjct: 37 RDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTI 96
Query: 95 IRAYSSSDE--PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
IR +S SDE + + +F +++ + PN FT P V+KA A+ + + G+ IHG+
Sbjct: 97 IRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALK 156
Query: 150 --FEDDLVISNSLIHFYAVC---------------------------------------- 167
F D + ++L+ Y +C
Sbjct: 157 YGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMID 216
Query: 168 -----GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
GD A +F + ++ VVSWN+MISG+ GFF+ A+E++REM+ +++P+ VT
Sbjct: 217 GYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVT 276
Query: 223 MVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+V VL A ++ LE G W+ + E +GI++D
Sbjct: 277 LVSVLPAISRLGSLELGEWLHLYAEDSGIRID 308
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 6/175 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+ AR +FD++ Q ++ +WNT+I YS + + +F ++ PN TL
Sbjct: 221 LGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM-KKGDIRPNYVTLVS 279
Query: 130 VIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A +R +G+ +H ED D V+ ++LI Y+ CG + A VF + +++
Sbjct: 280 VLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPREN 339
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
V++W++MI+GF G AI+ + +M V+P +V + +L+AC+ +E G
Sbjct: 340 VITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394
>gi|255580465|ref|XP_002531058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529353|gb|EEF31319.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 341
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 131/227 (57%), Gaps = 6/227 (2%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+++ +L++IHA + + K +S + + YA +F I PN++TWNT
Sbjct: 51 SSKYKLQQIHAFSIRHGVLPNNPDMGKHLIYSIVSVSAPMTYAHNIFTLIQNPNIFTWNT 110
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IR ++ S+ P + ++ +L +NS P+ T PF++KA ++ V RVG+ IH +
Sbjct: 111 MIRGHAESENPKPAIELYHRLHFNS-IEPDTHTYPFLLKAVSKMVNVRVGEKIHSISIRN 169
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
FE + + NSL+H YA CG A+ +F + +D+V+WN+ ISGF G +A++LY
Sbjct: 170 GFESLVFVQNSLMHMYAACGQYESAHKLFEFMPDRDLVAWNTAISGFALNGKPNEALKLY 229
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EM +E V+PD T+V +LSACA+ L G + +++ K G+ +L
Sbjct: 230 MEMGLEGVEPDGFTLVSLLSACAELGALALGRRIHAYMVKVGLDENL 276
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 14/194 (7%)
Query: 33 LTNQKQLKRIHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
+ N + ++IH+ + F F S ++ C E A K+F+ +P +L
Sbjct: 153 MVNVRVGEKIHSISIRNGFESLVFVQNSLMHMYAACG-----QYESAHKLFEFMPDRDLV 207
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
WNT I ++ + +P ++ +++++ P+ FTL ++ A A +G+ IH
Sbjct: 208 AWNTAISGFALNGKPNEALKLYMEMGLEG-VEPDGFTLVSLLSACAELGALALGRRIHAY 266
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+++L +NSLI YA CG + A VF + ++VVSW S+I G GF +A
Sbjct: 267 MVKVGLDENLHANNSLIDLYAKCGRIRDAQQVFDEMELRNVVSWTSLIVGLAVNGFGMEA 326
Query: 205 IELYREMEVENVKP 218
IE ++EME + + P
Sbjct: 327 IEHFKEMEKQGLVP 340
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 13/227 (5%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDP----YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
++Q +LK+IHA S P ++ +F +LS + + +A ++F+QI PN++
Sbjct: 46 SSQSKLKQIHA--FSIRHGVPPQNPDFNKHLIFALVSLS--APMSFAAQIFNQIQAPNIF 101
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TWNT+IR ++ S+ P + +F Q+ S P+ T PF+ KA A+ + +G+ IH +
Sbjct: 102 TWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSV 161
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
F+ + NSL+H Y+V G L AY VF ++ +D V+WNS+I+GF G +A
Sbjct: 162 VVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEA 221
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ LYREM E V+PD TMV +LSAC + L G V ++ K G+
Sbjct: 222 LTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGL 268
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 22/206 (10%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S SL A ++F+ + + WN++I ++ + P ++ ++ ++ + P+ FT+
Sbjct: 182 SVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREM-GSEGVEPDGFTM 240
Query: 128 PFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
++ A +G+ +H G+ ++ SN+L+ Y+ CG+ A VF +
Sbjct: 241 VSLLSACVELGALALGERVHMYMVKVGLVQNQHA-SNALLDLYSKCGNFRDAQKVFDEME 299
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA---------- 231
++ VVSW S+I G G +A++L+ E+E + +KP E+T V VL AC+
Sbjct: 300 ERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFN 359
Query: 232 --KKRDLEFGIWVSSHIEKNGIKMDL 255
++ E+GI IE +G +DL
Sbjct: 360 YFRRMKEEYGIL--PRIEHHGCMVDL 383
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 9/223 (4%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+KR+HA + + + Y+ SK+ A+ L +A K+FDQI P + WN LIR
Sbjct: 4 IKRLHAYYIVSGLYNCHYAMSKVLRSYAILQ-PDLVFAHKVFDQIEAPTTFLWNILIRGL 62
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFED 152
+ SD P + + F + P+ T PF++KA AR G+ +H G+ D
Sbjct: 63 AQSDAPADA-IAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSD 121
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ +SNSLIH YA CG+L A VF + KDVVSWNS+I G+ + F+ + L++ M+
Sbjct: 122 -IFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 180
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E VK D+VTM+ V+SAC + D ++ +IE I++D+
Sbjct: 181 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDV 223
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 120/274 (43%), Gaps = 53/274 (19%)
Query: 21 TVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF 80
+N G Q H H I L +D F S L+ C +L YAR +F
Sbjct: 102 ALNEGEQMHNH----------ITKLGLLSDIFVSN-SLIHLYAACG-----NLCYARSVF 145
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
D++ ++ +WN+LI YS + + + +L+ N ++ T+ V+ A R +
Sbjct: 146 DEMVVKDVVSWNSLICGYSQCNR-FKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDY 204
Query: 141 RVGQAIHGMFED------------------------------------DLVISNSLIHFY 164
+ + ED ++V N++I Y
Sbjct: 205 SMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAY 264
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
A D+ A +F I KKD++SW+SMISG+ + F A+E++R+M+ VKPD + +
Sbjct: 265 AKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIA 324
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
V+S+CA L+ G WV ++ +N IK D E
Sbjct: 325 SVVSSCAHLGALDLGKWVHEYVRRNNIKADTIME 358
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FDQIP+ +L +W+++I YS ++ + IF Q+ + P+ + V+ + A
Sbjct: 273 ARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQM-QRAKVKPDAIVIASVVSSCA 331
Query: 136 RPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ +H + D ++ NSLI Y CG A VF + +KD +SWNS
Sbjct: 332 HLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNS 391
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+I G GF ++++ L++ M E +P+ VT + VL ACA + +E G+
Sbjct: 392 IIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGL 441
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 8/227 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+IH+ + DP ++ C + YAR++FD IPQP L+ WNT+I+
Sbjct: 22 QLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKG 81
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI------HGMFE 151
YS + P ++L L+ S P+ FT PF++K R + + G+ + HG F+
Sbjct: 82 YSRINHPQNGVSMYL-LMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHG-FD 139
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+L + + IH +++C + +A VF M +VV+WN M+SG+ F+K+ L+ EM
Sbjct: 140 SNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEM 199
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
E V P+ VT+V++LSAC+K +DLE G + +I ++ +L E
Sbjct: 200 EKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILE 246
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 42/230 (18%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+F+ C L ++ ARK+FD + TWN ++ Y+ + +S M+F+++
Sbjct: 151 MFSLCRL-----VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEM-EKRGV 204
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYC 175
PN TL ++ A ++ G+ I+ G+ E +L++ N LI +A CG++ A
Sbjct: 205 SPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQS 264
Query: 176 VFVMIGKKDVVSWNSMISGFVEGG-------FFEK------------------------A 204
VF + +DV+SW S+++GF G +F++ A
Sbjct: 265 VFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEA 324
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ L+REM++ NVKPDE TMV +L+ACA LE G WV ++I+KN IK D
Sbjct: 325 LALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKND 374
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 99/197 (50%), Gaps = 7/197 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+ ++ ARK FDQIP+ + +W +I Y + I++ +F ++ S P+EF
Sbjct: 283 GFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQM-SNVKPDEF 341
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ ++ A A +G+ + ++D + N+LI Y CG++ A VF +
Sbjct: 342 TMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEM 401
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG- 239
KD +W +MI G G E+A+ ++ M ++ PDE+T + VL AC +E G
Sbjct: 402 HHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQ 461
Query: 240 IWVSSHIEKNGIKMDLT 256
+ S ++GIK ++T
Sbjct: 462 SFFISMTMQHGIKPNVT 478
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 37/261 (14%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T ++LK+IH Q+L DP + AL+ ++L Y+ ++ D P L+T+N+
Sbjct: 20 TTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNS 79
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+IRA+S S P +SF + ++++++ Y P+ +T F+++ +A+ + G ++HG
Sbjct: 80 MIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVK 139
Query: 150 --FEDDLVISNSLIHFYA--------------------VC-----------GDLAMAYCV 176
FE D + + LI+ YA VC GD+ A +
Sbjct: 140 YGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKL 199
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + KD ++WN+MISG+V+ G +A+ L+ M+ E VK +EV+MV VLSAC+ L
Sbjct: 200 FDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGAL 259
Query: 237 EFGIWVSSHIEKNGIKMDLTF 257
+ G W ++IE+N ++M LT
Sbjct: 260 DQGRWAHAYIERNKLRMTLTL 280
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 8/183 (4%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D + + + CA + +ARK+FD++ + WN +I Y + ++ +F
Sbjct: 176 DLVCQTAMVSACA--KMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLF-N 232
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCG 168
L+ NE ++ V+ A + G+ H E + L + +LI YA CG
Sbjct: 233 LMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCG 292
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
++ A VF + +K+V +W+S I G G EK +EL+ M+ ++V+P+E+T V VL
Sbjct: 293 NMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLR 352
Query: 229 ACA 231
C+
Sbjct: 353 GCS 355
>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 6/225 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+I A M+ T + S++ CAL+ + +A +F+QI PN Y WNT+IR
Sbjct: 173 QLKQIQAHMIITGLITHTFPVSRVLAFCALADTGDIRHAHLLFNQIEYPNTYIWNTMIRG 232
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
+S++ P+ F Q+V + F +KA+ + + G++IH F
Sbjct: 233 FSNAKMPVMGLSFFWQMVRERVEMDTR-SFVFALKASEQFLTALEGESIHCAIWKIGFPC 291
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
L++ N LIHFY+V G L +A VF +DVVSW SMI G+ ++ A++L+ M
Sbjct: 292 ALLVQNGLIHFYSVHGCLVLARKVFDETPARDVVSWTSMIDGYSTHDYYTDALKLFDSML 351
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ +V+P+EVTM+ VLSAC++K DL G + ++ + + + +
Sbjct: 352 LSDVEPNEVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNL 396
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 52 FFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS 107
FD +F+ ++ + LE ARK FD +P+ N+ +WN +I YS +++P ++
Sbjct: 416 IFDSMGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNVVSWNAMIAGYSQNNQPKKA 475
Query: 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-------DDLVISNSL 160
++F +V P E TL V+ A + +G+ IH M+ ++I+N+L
Sbjct: 476 IVLFHHMV-GEGLIPIENTLVCVLSACGQLGYLDLGRLIH-MYHIERKQKGTSVIIANAL 533
Query: 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220
I YA CG + A VF + +D+VSWNSMI+ G ++A+ ++ +M E KPD+
Sbjct: 534 IDMYAKCGVIDAAARVFNGMPGRDLVSWNSMIAACASHGHAKQALLMFGQMIHEGFKPDD 593
Query: 221 VT 222
+T
Sbjct: 594 IT 595
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 48/236 (20%)
Query: 60 KLFTPCAL----------STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFM 109
K+ PCAL S L ARK+FD+ P ++ +W ++I YS+ D +
Sbjct: 286 KIGFPCALLVQNGLIHFYSVHGCLVLARKVFDETPARDVVSWTSMIDGYSTHDYYTDALK 345
Query: 110 IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDLVIS----NSLIHFY 164
+F ++ S PNE T+ V+ A ++ +G++IH + +L +S N+++ Y
Sbjct: 346 LFDSMLL-SDVEPNEVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAILDMY 404
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG-------FFE--------------- 202
CG L A +F +G KDV SW SM++G+ + G FF+
Sbjct: 405 VKCGCLVAAREIFDSMGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNVVSWNAMIA 464
Query: 203 ---------KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS-HIEK 248
KAI L+ M E + P E T+V VLSAC + L+ G + HIE+
Sbjct: 465 GYSQNNQPKKAIVLFHHMVGEGLIPIENTLVCVLSACGQLGYLDLGRLIHMYHIER 520
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 125/237 (52%), Gaps = 38/237 (16%)
Query: 56 YSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
Y+ S+L C LS F L YA +F+ IP+PN WN + R ++ S +P+ + +++ +
Sbjct: 7 YAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVM 66
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGD 169
+ + PN FT PF++K+ A+ F+ GQ IHG F+ DL + SLI YA G
Sbjct: 67 I-SLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGR 125
Query: 170 LAMAYCVF-------------VMIGK------------------KDVVSWNSMISGFVEG 198
L A VF ++ G KDVVSWN+MISG+ E
Sbjct: 126 LEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAET 185
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
G ++KA+EL++EM NVKPDE TM V+SACA+ +E G V S I +G +L
Sbjct: 186 GNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNL 242
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 127/248 (51%), Gaps = 21/248 (8%)
Query: 21 TVNNGHQRHPHFLTNQKQLK-RIHAQMLS----------TDFFFDPYSASKLFTPCALST 69
T G Q H H L L +H ++S FD S + + AL T
Sbjct: 90 TFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALIT 149
Query: 70 -FSS---LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
++S +E A+KMFD+IP ++ +WN +I Y+ + ++ +F +++ + P+E
Sbjct: 150 GYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMM-KTNVKPDES 208
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ V+ A A+ +G+ +H D +L I N+LI Y+ CG++ A + +
Sbjct: 209 TMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGL 268
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
KDV+SWN++I G+ +++A+ L++EM P++VTM+ +L ACA ++ G
Sbjct: 269 SNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGR 328
Query: 241 WVSSHIEK 248
W+ +I+K
Sbjct: 329 WIHVYIDK 336
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 16/189 (8%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C +E A ++ + + ++ +WNTLI Y+ + ++ ++F +++ S
Sbjct: 251 LYSKCG-----EVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEML-RSGE 304
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL---VISN------SLIHFYAVCGDLA 171
PN+ T+ ++ A A +G+ IH + L V++N SLI YA CGD+
Sbjct: 305 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDID 364
Query: 172 MAYCVFVMIG-KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
A V + + +WN+MI GF G A +++ M ++PD++T V +LSAC
Sbjct: 365 AAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 424
Query: 231 AKKRDLEFG 239
+ L+ G
Sbjct: 425 SHSGMLDLG 433
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 112/192 (58%), Gaps = 9/192 (4%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDE---PIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
YAR +FDQIP+P + +N+LIRA SS+ + +++ +++ PN FTL F +
Sbjct: 76 YARNLFDQIPEPTAFCYNSLIRALSSAAGVAPAADTVLVYRRMLRAGSPLPNSFTLAFAL 135
Query: 132 KAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF-VMIGKKDV 185
KA + G+ +H E + L++ YA C ++A+A VF M+G K++
Sbjct: 136 KACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNL 195
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+W++MI G+ G +A+ L+REM+ +V PDEVTMV V+SACAK L+ G WV +
Sbjct: 196 AAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAF 255
Query: 246 IEKNGIKMDLTF 257
I++ GI +DL
Sbjct: 256 IDRKGITVDLEL 267
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 9/219 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFD-QIPQPNLYTWNTLIRAY 98
+++H+Q PY + L A + AR +FD + NL W+ +I Y
Sbjct: 148 RQLHSQAFRRGLEPSPYVQTGLLNLYA--KCEEVALARTVFDGMVGDKNLAAWSAMIGGY 205
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----D 153
S ++ +F ++ + P+E T+ VI A A+ +G+ +H + D
Sbjct: 206 SRVGMVNEALGLFREM-QAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVD 264
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L +S +LI YA CG + A VF + ++D +W++MI G G E A++L+ M
Sbjct: 265 LELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLE 324
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
V+P+ VT + VLSACA + G S +++ GIK
Sbjct: 325 LKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIK 363
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 141/259 (54%), Gaps = 14/259 (5%)
Query: 4 LSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQK--QLKRIHAQMLSTDFFFDPYSASKL 61
++T ++ + +P L ++ T + +LK++H ML F + +KL
Sbjct: 1 MATTTTTLHQSSSPLLLPTTTQKPKNSSLQTCKTLIELKQLHCNMLKKGVF----NINKL 56
Query: 62 FTPCA-LSTFSSLEYARKMF--DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS 118
C + T SL YA F D+ + +LYT NTLIR Y++S ++ I+L ++
Sbjct: 57 IAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVM 116
Query: 119 PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMA 173
P+ FT PF++ A ++ + F G +HG+ DL ++NSLIHFYA CG + +
Sbjct: 117 GIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLG 176
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF + +++VVSW S+I+G+ ++A+ L+ EM V+P+ VTMV +SACAK
Sbjct: 177 RKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKL 236
Query: 234 RDLEFGIWVSSHIEKNGIK 252
+DLE G V + + + G+K
Sbjct: 237 KDLELGKKVCNLMTELGVK 255
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 37/217 (17%)
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
R++FD+ NL +NT++ Y + ++ +++ P++ T+ I A A+
Sbjct: 278 REIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQR-PDKVTMLSTIAACAQ 336
Query: 137 PVQFRVGQAIHG-MFEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
VG++ H +F + L ISN++I Y CG A VF + K VV+WNS+
Sbjct: 337 LGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSL 396
Query: 192 ISGFVEGG-------------------------------FFEKAIELYREMEVENVKPDE 220
I+G V G FE+AI+L REM+ + +K D
Sbjct: 397 IAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDR 456
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
VTMV + SAC L+ W+ ++IEKN I +D+
Sbjct: 457 VTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQL 493
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 112/220 (50%), Gaps = 14/220 (6%)
Query: 41 RIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++H ++ D + A+ L + C ++ RK+FD++ + N+ +W +LI
Sbjct: 143 QVHGVVVKMGLVKDLFVANSLIHFYAACG-----KVDLGRKVFDEMLERNVVSWTSLING 197
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED----- 152
YS + ++ +F ++V PN T+ I A A+ +G+ + + +
Sbjct: 198 YSVVNMAKEAVCLFFEMV-EVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKS 256
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ ++ N+L+ Y CGD+ +F K++V +N+++S +V+ G + + + EM
Sbjct: 257 NTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEML 316
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+ +PD+VTM+ ++ACA+ DL G +++ +NG++
Sbjct: 317 QKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLE 356
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTL 127
LE A ++F ++P+ NL +WNT+I A + +E I L+ + N + T+
Sbjct: 404 GELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAID----LLREMQNQGIKGDRVTM 459
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A + + I+ E D+ + +L+ ++ CGD A VF + K
Sbjct: 460 VGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEK 519
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
+DV +W + I G + AIEL+ EM ++VK D+ V +L+A
Sbjct: 520 RDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTA 566
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 130/234 (55%), Gaps = 10/234 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T+ + K+ HA +L T +P +SKL + ALS L YARK+F Q+ P+ + NT
Sbjct: 22 TSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNT 81
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----G 148
+IR Y+ S P ++ ++ +V N +T PFV+ A AR ++G+ H
Sbjct: 82 MIRGYARSQNPYEAVSLYYFMVERGVPVDN-YTYPFVLAACARLGAVKLGRRFHCEVLKN 140
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F DL + N+LI FY CG A VF +DVV+WN MI+ + G EKA +L
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLL 200
Query: 209 REM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH---IEKNGIKMDLTFE 258
EM +++N++PDEVTMV ++ ACA+ +LE G ++ S+ ++K I DL E
Sbjct: 201 DEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLE 254
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 18/213 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLI 95
+R H ++L F S LF AL F S A +FD+ ++ TWN +I
Sbjct: 131 RRFHCEVLKNGF------GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMI 184
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED--- 152
A+ + ++F + ++ P+E T+ ++ A A+ G+ +H ++
Sbjct: 185 NAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDK 244
Query: 153 -----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
DLV+ +L+ YA CG + +A VF + ++V +WN++I G G E AI L
Sbjct: 245 FEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISL 304
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ +ME + + PD+VT + +L AC+ ++ G+
Sbjct: 305 FDQMEHDKLMPDDVTFIALLCACSHAGLVDEGL 337
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 129/226 (57%), Gaps = 8/226 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASK--LFTPCALSTFSSLEYARKMFDQIPQP-NLYTWNTL 94
+L++IHA + K +F +L + + YA K+F +I +P N++ WNTL
Sbjct: 32 KLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTL 91
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
IR Y+ + + ++ ++ + P+ T PF++KA + R+G+ IH +
Sbjct: 92 IRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSG 151
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F + + NSL+H YA CGD+A AY VF + +KD+V+WNS+I+GF E G E+A+ LY
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYT 211
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EM+++ +KPD T+V +LSACAK L G ++ K G+ +L
Sbjct: 212 EMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNL 257
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 90/163 (55%), Gaps = 9/163 (5%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A K+FD++P+ +L WN++I ++ + +P ++ ++ ++ P+ FT+ ++ A A
Sbjct: 175 AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKG-IKPDGFTIVSLLSACA 233
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ +G+ H G+ + L SN L+ YA CG + A +F + K+ VSW
Sbjct: 234 KIGALTLGKRFHVYMIKVGLTRN-LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292
Query: 190 SMISGFVEGGFFEKAIELYREMEV-ENVKPDEVTMVVVLSACA 231
S+I G G ++AIEL++ ME E + P E+T V +L AC+
Sbjct: 293 SLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACS 335
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 130/258 (50%), Gaps = 38/258 (14%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T+ K L++IHAQ++ T D +AS++ C S + YA +F QI PNL+ WNT
Sbjct: 7 TSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCT-SPAGDINYAYLVFTQIRNPNLFVWNT 65
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+IR +S S P + +F+ +++ SP P T P V KA A+ G +HG
Sbjct: 66 IIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIK 125
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVF-------------VMIG------------- 181
E+D I N++++ Y CG L A +F ++IG
Sbjct: 126 LGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRL 185
Query: 182 -----KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
++ VSWNSMISG+V G F +A+EL+ M+ E +KP E TMV +L+ACA L
Sbjct: 186 FDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGAL 245
Query: 237 EFGIWVSSHIEKNGIKMD 254
G W+ +I KN ++
Sbjct: 246 RQGEWIHDYIVKNNFALN 263
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L+ ++ +R++FD++ N +WN++I Y ++ +F ++ P+EF
Sbjct: 172 GLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRM-QEEGIKPSEF 230
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ ++ A A R G+ IH F + ++ ++I Y+ CG + A VF
Sbjct: 231 TMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSA 290
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
KK + WNS+I G G +A+ L+ ++E N+KPD V+ + VL+AC
Sbjct: 291 PKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTAC 340
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 52/280 (18%)
Query: 7 PVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCA 66
P SI HP+ + L H + L+ IHAQM+ Y+ SKL C
Sbjct: 27 PYDSIRNHPSLSLL----------HNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCI 76
Query: 67 LS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
LS F L YA +F I +PNL WNT+ R ++ S +P+ + +++ ++ + PN +
Sbjct: 77 LSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMI-SLGLLPNSY 135
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T PFV+K+ A+ F+ GQ IHG + DL + SLI Y G L A+ VF
Sbjct: 136 TFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKS 195
Query: 181 GKKDVVSWN-------------------------------SMISGFVEGGFFEKAIELYR 209
+DVVS+ +MISG+ E G +++A+EL++
Sbjct: 196 PHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFG----IWVSSH 245
+M NV+PDE TMV V+SACA+ +E G +W+ H
Sbjct: 256 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDH 295
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 105/181 (58%), Gaps = 6/181 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A+K+FD+IP ++ +WN +I Y+ + ++ +F ++ + P+E T+ V+
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM-KTNVRPDESTMVTVVS 274
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A+ +G+ +H +D +L I N+LI Y+ CG+L A +F + KDV+S
Sbjct: 275 ACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS 334
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN++I G+ +++A+ L++EM P++VTM+ +L ACA ++ G W+ +I+
Sbjct: 335 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID 394
Query: 248 K 248
K
Sbjct: 395 K 395
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C LE A +F+++P ++ +WNTLI Y+ + ++ ++F +++ S
Sbjct: 310 LYSKCG-----ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML-RSGE 363
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMA 173
PN+ T+ ++ A A +G+ IH + L + SLI YA CGD+ A
Sbjct: 364 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 423
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+ VF I K + SWN+MI GF G + + +L+ M ++PD++T V +LSAC+
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483
Query: 234 RDLEFG 239
L+ G
Sbjct: 484 GMLDLG 489
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L A VF I + +++ WN+M G A++LY M + P+ T VL +
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143
Query: 230 CAKKRDLEFGIWVSSHIEKNGIKMDL 255
CAK + + G + H+ K G +DL
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDL 169
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 8/225 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYS--ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
L++IHA++L+ S SK+ + ALS L YARK+F QIP P ++ +NT+IR
Sbjct: 144 LRQIHARILTRLLPIPTISFLLSKILSFSALSPLGDLNYARKIFAQIPNPGIFPYNTIIR 203
Query: 97 AYSSSDEPIQS-FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
S + P + + ++ +V N FT+ FV+KA A + F G+ IH F
Sbjct: 204 GCSYAKNPSREPYFLYKSMVTRGFPRANTFTMAFVLKACASIMAFEEGRQIHARILRSGF 263
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ + +SL+ Y C ++ +A VF I ++++V W++MISG+ G +A+ ++RE
Sbjct: 264 SLNPYVQSSLVSLYGKCEEIRLAKQVFDEITERNLVCWSAMISGYARVGMVNEALSMFRE 323
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M+ ++PDEV++V V+SACA L+ G W+ ++I+K I +DL
Sbjct: 324 MQEVGIEPDEVSLVGVISACAMAGALDIGRWIHAYIKKRMIHIDL 368
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IHA++L + F +PY S L + + A+++FD+I + NL W+ +I Y+
Sbjct: 252 RQIHARILRSGFSLNPYVQSSLVS--LYGKCEEIRLAKQVFDEITERNLVCWSAMISGYA 309
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDL 154
++ +F ++ P+E +L VI A A +G+ IH M DL
Sbjct: 310 RVGMVNEALSMFREM-QEVGIEPDEVSLVGVISACAMAGALDIGRWIHAYIKKRMIHIDL 368
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++ +L++ YA CG + A +F + KD +W+SMI G G E A+E++ ME
Sbjct: 369 ELNTALVNMYAKCGCIEKAKEIFDYMPVKDSKAWSSMIVGLAIHGLAEDALEMFSRME 426
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 8/225 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+L ++HA ++ D ++ L + CAL + YAR++FD+IP P+ + +N+LIRA
Sbjct: 27 RLNQLHAHLVVHGV--DDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRA 84
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y +S P Q + L+ + PNEFTLPF++KA AR + HG+ F
Sbjct: 85 YCNSHCP-QEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVG 143
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ + N+L+H YA G L + F + ++VVSWNSMI+G+ + G +A L+ M
Sbjct: 144 QVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMR 203
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ + DE T+V +L AC+ + +LEFG V SH+ G ++DL
Sbjct: 204 RQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLIL 248
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 37/218 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
++ SL +R+ FD++ N+ +WN++I Y+ + ++ +F + + +EFTL
Sbjct: 156 ASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLF-EGMRRQGLLADEFTL 214
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVM--- 179
++ A + G+ +H DL+++N+L+ Y CGDL MA+ F M
Sbjct: 215 VSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPF 274
Query: 180 ----------------------------IGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
I +K ++SWN+MIS +V+GG F +A++LY M
Sbjct: 275 KNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRM 334
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
++ + PDE T+ VLSAC + DL G + I N
Sbjct: 335 KLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDN 372
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 8/201 (3%)
Query: 46 MLSTDFFFDPYSASKLFTP--CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDE 103
M T F P+ + +T CAL+ +S++ AR F+QIP+ ++ +WN +I Y
Sbjct: 264 MAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGR 323
Query: 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISN 158
++ ++ ++ P+EFTL V+ A + G+ IH D+ + + N
Sbjct: 324 FHEALDLYNRMKLLG-LAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFN 382
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
SL+ YA CG + A +F + K+V+SWN++I G + A+ +R M + P
Sbjct: 383 SLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPP 442
Query: 219 DEVTMVVVLSACAKKRDLEFG 239
DE+T V +LSAC LE G
Sbjct: 443 DEITFVALLSACNHGGLLEAG 463
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 8/225 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+L ++HA ++ D ++ L + CAL + YAR++FD+IP P+ + +N+LIRA
Sbjct: 27 RLNQLHAHLVVHGV--DDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRA 84
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y +S P Q + L+ + PNEFTLPF++KA AR + HG+ F
Sbjct: 85 YCNSHCP-QEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVG 143
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ + N+L+H YA G L + F + ++VVSWNSMI+G+ + G +A L+ M
Sbjct: 144 QVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMR 203
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ + DE T+V +L AC+ + +LEFG V SH+ G ++DL
Sbjct: 204 RQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLIL 248
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 37/218 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
++ SL +R+ FD++ N+ +WN++I Y+ + ++ +F + + +EFTL
Sbjct: 156 ASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLF-EGMRRQGLLADEFTL 214
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVM--- 179
++ A + G+ +H DL+++N+L+ Y CGDL MA+ F M
Sbjct: 215 VSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPF 274
Query: 180 ----------------------------IGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
I +K ++SWN+MIS +V+GG F +A++LY M
Sbjct: 275 KNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRM 334
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
++ + PDE T+ VLSAC + DL G + I N
Sbjct: 335 KLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDN 372
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 8/201 (3%)
Query: 46 MLSTDFFFDPYSASKLFTP--CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDE 103
M T F P+ + +T CAL+ +S++ AR F+QIP+ ++ +WN +I Y
Sbjct: 264 MAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGR 323
Query: 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISN 158
++ ++ ++ P+EFTL V+ A + G+ IH D+ + + N
Sbjct: 324 FHEALDLYNRMKLLG-LAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFN 382
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
SL+ YA CG + A +F + K+V+SWN++I G + A+ +R M + P
Sbjct: 383 SLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPP 442
Query: 219 DEVTMVVVLSACAKKRDLEFG 239
DE+T V +LSAC LE G
Sbjct: 443 DEITFVALLSACNHGGLLEAG 463
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 129/228 (56%), Gaps = 12/228 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCA-LSTFSSLEYARKMF-----DQIPQPNLYTW 91
QLK++H Q+ P + +KL A +++ SL+YARK F D L+
Sbjct: 40 QLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFML 99
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
N+LIR YSS+ ++ +++++++ PN +T PFV+ + F G +HG
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLG-VTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVV 158
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
E+D+ I N LIHFYA CG + + VF + +++VVSW S+I G+ G ++A+
Sbjct: 159 KMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVS 218
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
L+ EM ++P VTMV V+SACAK RDL+ G V ++I + G+K++
Sbjct: 219 LFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLN 266
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 37/223 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+++ A+++FD+ NL +NT++ Y+ ++ I +++ P P+ T+
Sbjct: 281 GAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPR-PDRVTMLSA 339
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I A+A+ V G+ HG E I N +I Y CG MA VF ++ K V
Sbjct: 340 ISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTV 399
Query: 186 VSWNS-------------------------------MISGFVEGGFFEKAIELYREMEVE 214
VSWNS MISG V+ FE AIEL+REM+ E
Sbjct: 400 VSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGE 459
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+K D VTM+ + SAC E WV ++IEKNGI D+
Sbjct: 460 GIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRL 502
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 98/185 (52%), Gaps = 6/185 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+++ K+F+ + + N+ +W +LI Y+ D P ++ +F ++V + P+ T+ VI
Sbjct: 182 MDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMV-EAGIRPSSVTMVCVIS 240
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A+ +G+ + + + V+ N+L+ Y CG + A +F +++V
Sbjct: 241 ACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVL 300
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+N+++S + G +A+ + EM + +PD VTM+ +SA A+ DL +G ++
Sbjct: 301 YNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVI 360
Query: 248 KNGIK 252
+NG++
Sbjct: 361 RNGLE 365
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 6/186 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E A ++F+QIP+ N WNT+I + +F ++ + T+ +
Sbjct: 413 GDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREM-QGEGIKADRVTMMGI 471
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
A + + +H E D+ ++ +L+ +A CGD A VF + ++DV
Sbjct: 472 ASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDV 531
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+W + I G E A L+ +M ++ VKPD V V VL+AC+ +E G+ + S
Sbjct: 532 SAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSL 591
Query: 246 IEKNGI 251
+E +GI
Sbjct: 592 MEDHGI 597
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%)
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
NS+I G+ G +AI LY M V V P+ T VLS C K GI V + K
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159
Query: 249 NGIKMDL 255
G++ D+
Sbjct: 160 MGLEEDV 166
>gi|296090683|emb|CBI41082.3| unnamed protein product [Vitis vinifera]
Length = 413
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 125/233 (53%), Gaps = 9/233 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPC-ALSTFSSLEYARKMFDQIPQPNLYTWN 92
T Q+ +IHA ++ T + + +KL A S+ + L YAR +FD+IP P+ + WN
Sbjct: 8 TKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWN 67
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
T+IRAY +S P +S +F Q+ + + ++L VI+A R GQ +H
Sbjct: 68 TMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLK 127
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKA 204
DL + +LI YA GD+ +A + + +D+VSWN+MI G G +A
Sbjct: 128 IGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLRDLVSWNTMIHGHASLGDSNEA 187
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ L+ EM++ NV PD+VTMV VLSAC L G + IE+N I++DL
Sbjct: 188 LRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKL 240
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 19/143 (13%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNL---YTWN 92
+++H Q+L S LF AL + F +E AR + D++ P+L +WN
Sbjct: 119 QKLHTQVLKIGL------GSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLRDLVSWN 172
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
T+I ++S + ++ +F ++ + P++ T+ V+ A +G+ IH E
Sbjct: 173 TMIHGHASLGDSNEALRLFHEMQL-ANVLPDKVTMVSVLSACGDVGALGMGKMIHECIER 231
Query: 153 -----DLVISNSLIHFYAVCGDL 170
DL + SL+ YA CGD+
Sbjct: 232 NRIEIDLKLGTSLVDMYAKCGDI 254
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 110/187 (58%), Gaps = 6/187 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
FS Y R +F QI QPN++ WNT+IR S+D + F L+ + + PN FT PF
Sbjct: 59 FSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSND-CFDDAIEFYGLMRSEGFLPNNFTFPF 117
Query: 130 VIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+KA AR + ++G IH G F+ D+ + SL+ YA CG L A+ VF I K+
Sbjct: 118 VLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKN 177
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VVSW ++ISG++ G F +AI+++R + N+ PD T+V VLSAC + DL G W+
Sbjct: 178 VVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHK 237
Query: 245 HIEKNGI 251
I + G+
Sbjct: 238 CIMEMGM 244
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 116/215 (53%), Gaps = 10/215 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IH ++ F D + + L C + LE A K+FD IP N+ +W +I Y
Sbjct: 133 KIHTLVVKGGFDCDVFVKTSLV--CLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIG 190
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDL 154
+ ++ +F +L+ P+ FT+ V+ A + G+ IH GM + +
Sbjct: 191 VGKFREAIDMFRRLL-EMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRN-V 248
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ SL+ YA CG++ A VF + +KD+VSW +MI G+ G ++AI+L+ +M+ E
Sbjct: 249 FVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRE 308
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
NVKPD T+V VLSACA+ LE G WVS +++N
Sbjct: 309 NVKPDCYTVVGVLSACARLGALELGEWVSGLVDRN 343
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 93/165 (56%), Gaps = 6/165 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++E AR +FD +P+ ++ +W +I+ Y+ + P ++ +FLQ+ + P+ +T+ V
Sbjct: 262 GNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVK-PDCYTVVGV 320
Query: 131 IKAAARPVQFRVGQAIHGMFEDDL-----VISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A AR +G+ + G+ + + V+ +LI YA CG ++ A+ VF + +KD
Sbjct: 321 LSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDR 380
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
V WN++ISG G+ + + L+ ++E +KPD T + +L C
Sbjct: 381 VVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGC 425
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F I + ++ WN+MI G V F+ AIE Y M E P+ T VL ACA+ D
Sbjct: 68 LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127
Query: 236 LEFGIWVSSHIEKNGIKMDL 255
L+ G+ + + + K G D+
Sbjct: 128 LQLGVKIHTLVVKGGFDCDV 147
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 136/263 (51%), Gaps = 46/263 (17%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK+IHA + T P +A++L LST ++YARK F QI PN ++WNT+IR
Sbjct: 29 RHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIR 88
Query: 97 AYSSSD-------EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-- 147
A + SD +++ + F ++ + PN+FT P V+KA A+ + G+ +H
Sbjct: 89 ALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGF 148
Query: 148 ----GMFEDDLVISNSLIHFYAVCGDLAMAYCVF-------------VMIG--------- 181
G+ D+ V SN L+ Y +CG + A+ +F VMI
Sbjct: 149 VVKLGLVSDEFVRSN-LVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLR 207
Query: 182 ----------KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
K VVSWN MISG + G F++AIE++ +M++ +V P+ VT+V VL A +
Sbjct: 208 ASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVS 267
Query: 232 KKRDLEFGIWVSSHIEKNGIKMD 254
+ +E G WV EKN I++D
Sbjct: 268 RLGAIELGKWVHLFAEKNEIEID 290
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 92/184 (50%), Gaps = 9/184 (4%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL-VYNSPYFPNEFTLP 128
L +R++FD +P ++ +WN +I + + ++ +F + + + P PN TL
Sbjct: 203 MGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVP--PNYVTLV 260
Query: 129 FVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI-GK 182
V+ A +R +G+ +H E D V+ ++LI Y+ CG + A VF I K
Sbjct: 261 SVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNK 320
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
K+ ++W+++I G G A++ + M+ V P +V + VLSAC+ +E G +
Sbjct: 321 KNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSI 380
Query: 243 SSHI 246
H+
Sbjct: 381 YYHM 384
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 132/245 (53%), Gaps = 28/245 (11%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+ ++HA++ F +P + ++L ++S ++++ YA+ +F+ PN + +N +IR
Sbjct: 40 EFAQLHARLTKLGFIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPNTFAYNVMIRG 99
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y+ ++P + +F ++ N+ N+ T PFV+KA ++ G+ +HG+ +
Sbjct: 100 YAQREKPENALSLFYSMLCNANSGQNKLTFPFVLKACSQVRAIEEGKQVHGLVFKHGLSE 159
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
DL + NSLI Y+ CG + A VF I DVVSWNSMISG V+ GF E+ +++ M
Sbjct: 160 DLFVQNSLISMYSSCGLIGFACQVFNKIDDPDVVSWNSMISGLVDLGFVEEGKQMFDRMS 219
Query: 213 VEN-----------VKP----------DEV--TMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+ VK D++ TMV VL+AC+ LE G W+ +HIEKN
Sbjct: 220 KRSLVTWNCLIDGYVKAGLLMEARELFDQMRFTMVSVLTACSYLGALEQGEWMQAHIEKN 279
Query: 250 GIKMD 254
GI ++
Sbjct: 280 GIDVN 284
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E ++MFD++ + +L TWN LI Y + +++ +F Q+ FT+ V+
Sbjct: 208 VEEGKQMFDRMSKRSLVTWNCLIDGYVKAGLLMEARELFDQM---------RFTMVSVLT 258
Query: 133 AAARPVQFRVGQAIHGMFEDDLVISNS-----LIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + G+ + E + + NS L+ +A CG + A VF I ++DV +
Sbjct: 259 ACSYLGALEQGEWMQAHIEKNGIDVNSVLGTALVEMFAKCGSIERALSVFKSIEERDVGA 318
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
WNS+I G ++A ++ +M N D + + +LS C
Sbjct: 319 WNSIIHKLAAHGHGQEAFAIFSDMLRSNTLLDGIIFLGLLSVC 361
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 130/239 (54%), Gaps = 8/239 (3%)
Query: 16 NPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY 75
+P+ + N R + KQLK +HA +L F Y S + F+ Y
Sbjct: 9 SPSLINALNLKNRLLQSFNSLKQLKHVHAALLRLGFDQGSYLWSMIIRSSF--DFNDTTY 66
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
R +F+QI +P++ +NT+IR SSD +S + + + PN FT PFVIKA A
Sbjct: 67 TRLIFNQIKEPDVVLYNTMIRGLVSSDCFTESIEFYYSM-RKKGFLPNNFTFPFVIKACA 125
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R + F++G +H + F+ +L ++ SL+ YA CG + A + +I + ++VSW +
Sbjct: 126 RLLDFQLGIMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWTA 185
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+ISG++ G + +AI+L+R M ++PD T+V VLSAC + DL G W+ +I +N
Sbjct: 186 IISGYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITEN 244
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 102/197 (51%), Gaps = 11/197 (5%)
Query: 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
S L+ C S++ A KM D IP+ N+ +W +I Y + ++ +F +++
Sbjct: 154 SLVSLYAKCG-----SIDDALKMLDLIPESNIVSWTAIISGYIGVGKYREAIDLFRRML- 207
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLA 171
+ P+ FT+ V+ A + G+ I ++++ N SL+ YA G++
Sbjct: 208 ETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVTTSLVDLYAKHGNME 267
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A C+F + ++D+VSW++MI G+ G + A++L+ +M +KPD MV L ACA
Sbjct: 268 KARCLFDGMAERDIVSWSAMIQGYASNGLPKDALDLFFKMLNAGLKPDHYAMVGFLCACA 327
Query: 232 KKRDLEFGIWVSSHIEK 248
+ LE G W S+ +++
Sbjct: 328 RLGALELGDWGSNLMDR 344
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++E AR +FD + + ++ +W+ +I+ Y+S+ P + +F +++ N+ P+ + +
Sbjct: 264 GNMEKARCLFDGMAERDIVSWSAMIQGYASNGLPKDALDLFFKML-NAGLKPDHYAMVGF 322
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A AR +G + F + V+ +LI YA CG +A A+ VF I KD
Sbjct: 323 LCACARLGALELGDWGSNLMDRTEFFTNHVLGTALIDMYAKCGSMAKAWEVFKGIKGKDR 382
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
WN+ ISG G + A L+ +ME ++PD T V +L C
Sbjct: 383 AVWNAAISGLAMNGHEKAAFGLFGQMERFGIQPDGNTFVGLLCGC 427
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F I + DVV +N+MI G V F ++IE Y M + P+ T V+ ACA+ D
Sbjct: 70 IFNQIKEPDVVLYNTMIRGLVSSDCFTESIEFYYSMRKKGFLPNNFTFPFVIKACARLLD 129
Query: 236 LEFGIWVSSHIEKNGIKMDL 255
+ GI + + + K G +L
Sbjct: 130 FQLGIMMHTLVVKLGFDCNL 149
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 5/224 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+L++IHA ++ + A+KL CA+S SL YA+ +F Q+ P WN++IR
Sbjct: 18 KRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSIIR 77
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
++ S PI + + + Q+V +S P+ FT FV+KA R R + +HG ++
Sbjct: 78 GFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYD 137
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+++ +L+ Y+ G + +A VF + +D+V+WN+MIS F + G ++A++ Y +M
Sbjct: 138 ADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQM 197
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
ENV D T+V ++S+CA L G+ + +NG+ L
Sbjct: 198 RSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSL 241
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 8/210 (3%)
Query: 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+++ K +H ++ + D + L S S+ AR++FD++P +L WN +I
Sbjct: 121 ERKCKEVHGSVIRCGYDADVIVCTNLVK--CYSAMGSVCIARQVFDKMPARDLVAWNAMI 178
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMF 150
+S ++ + Q+ + FTL +I + A +G +H
Sbjct: 179 SCFSQQGLHQEALQTYNQMRSENVDIDG-FTLVGLISSCAHLGALNIGVQMHRFARENGL 237
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ L + N+LI YA CG L A +F + +KD+ +WNSMI G+ G +AI +++
Sbjct: 238 DQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQ 297
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
M ++P+ VT + +L C+ + ++ G+
Sbjct: 298 MLEARIQPNPVTFLGLLCGCSHQGLVQEGV 327
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 133/269 (49%), Gaps = 42/269 (15%)
Query: 29 HPHF------LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQ 82
HPH T K L++IHA +L T P + S + CA S + YA +F Q
Sbjct: 24 HPHLSILEKHCTTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQ 83
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
I PNL++WNT+IR +S S P + +F+ ++ S P+ T P V KA A+
Sbjct: 84 IHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHY 143
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLA-----------------------MAY 174
G +HG + D I N++I+ YA CG L+ +A
Sbjct: 144 GAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAK 203
Query: 175 C--------VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
C +F + ++ VSWNSMISG+V G +A++L+ +M+ E +KP E TMV +
Sbjct: 204 CGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSL 263
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
L+A A+ L+ G W+ +I KN ++++
Sbjct: 264 LNASARLGALKQGEWIHDYIRKNNFELNV 292
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L+ ++ +RK+FD++P N +WN++I Y + ++ +F Q+ P+EF
Sbjct: 200 GLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQM-QEERIKPSEF 258
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ ++ A+AR + G+ IH FE +++++ S+I Y CG + A+ VF M
Sbjct: 259 TMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMA 318
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
K + SWN+MI G G +AI+L+ +E N++PD+VT V VL+AC
Sbjct: 319 PLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTAC 368
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 119/194 (61%), Gaps = 6/194 (3%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
LS S + YA ++F QI PN++TWNT+IR Y+ S+ P+ + ++ Q+ + S P+ T
Sbjct: 84 LSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQM-HVSCIEPDTHT 142
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
PF++KA A+ + R G+ +H + FE + + N+L+H YA CG A+ +F ++
Sbjct: 143 YPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMA 202
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
++++V+WNS+I+G+ G +A+ L+REM + V+PD TMV +LSACA+ L G
Sbjct: 203 ERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRR 262
Query: 242 VSSHIEKNGIKMDL 255
++ K G+ +L
Sbjct: 263 AHVYMVKVGLDGNL 276
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 28/243 (11%)
Query: 33 LTNQKQLKRIHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + ++ +++H+ + F F + ++ C + E A K+F+ + + NL
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHA-----ESAHKLFELMAERNLV 207
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TWN++I Y+ + P ++ +F ++ P+ FT+ ++ A A +G+ H
Sbjct: 208 TWNSVINGYALNGRPNEALTLFREMGLRGVE-PDGFTMVSLLSACAELGALALGRRAHVY 266
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ +L N+L+ YA CG + A+ VF + +K VVSW S+I G GF ++A
Sbjct: 267 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 326
Query: 205 IELYREMEVENVKPDEVTMVVVLSACA------------KKRDLEFGIWVSSHIEKNGIK 252
+EL++E+E + + P E+T V VL AC+ K+ E+GI IE G
Sbjct: 327 LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGI--VPKIEHYGCM 384
Query: 253 MDL 255
+DL
Sbjct: 385 VDL 387
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 7/228 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T+ + K+ HA +L T +P +SKL + ALS L YARK+F Q+ P+ + NT
Sbjct: 22 TSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNT 81
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----G 148
+IR Y+ S P ++ ++ +V N +T PFV+ A AR ++G+ H
Sbjct: 82 MIRGYARSQNPYEAVSLYYFMVERGVPVDN-YTYPFVLAACARLGAVKLGRRFHCEVLKN 140
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F DL + N+LI FY CG A VF +DVV+WN MI+ + G EKA +L
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLL 200
Query: 209 REM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EM +++N++PDEVTMV ++ ACA+ +LE G ++ S+ ++ G+ +L
Sbjct: 201 DEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENL 248
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 121/228 (53%), Gaps = 15/228 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLI 95
+R H ++L F S LF AL F S A +FD+ ++ TWN +I
Sbjct: 131 RRFHCEVLKNGF------GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMI 184
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
A+ + ++F + ++ P+E T+ ++ A A+ G+ +H
Sbjct: 185 NAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGL 244
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+++L ++N+++ Y C D+ A VF I +KDV+SW SM+SG + G+F++A+ L+++
Sbjct: 245 DENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQK 304
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
M++ ++ DE+T+V VLSACA+ L+ G ++ I+K I DL E
Sbjct: 305 MQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLE 352
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A+++F++I + ++ +W +++ + S ++ +F ++ N +E TL V+
Sbjct: 264 IESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIEL-DEITLVGVLS 322
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A+ G+ IH + + DLV+ +L+ YA CG + +A VF + ++V +
Sbjct: 323 ACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFT 382
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
WN++I G G E AI L+ +ME + + PD+VT + +L AC+ ++ G+
Sbjct: 383 WNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGL 435
>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g05240
gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
Length = 565
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 11/221 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS-SLEYARKMFDQIPQPNLYTWNTLIR 96
+L ++H M+ + + S+L C + +L YAR +F+ I P++Y WN++IR
Sbjct: 21 ELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIR 80
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA--RPVQFRVGQAIHGM----- 149
YS+S P ++ +IF Q + Y P+ FT P+V+KA + R +QF G +HG
Sbjct: 81 GYSNSPNPDKA-LIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQF--GSCVHGFVVKTG 137
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
FE ++ +S L+H Y CG++ VF I + +VV+W S+ISGFV F AIE +R
Sbjct: 138 FEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFR 197
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
EM+ VK +E MV +L AC + +D+ G W ++ G
Sbjct: 198 EMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLG 238
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 15/201 (7%)
Query: 53 FDPYSASKLFTPCALST--------FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEP 104
FDPY SK+ L+T L AR +FD +P+ L +WN++I YS + +
Sbjct: 239 FDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDA 298
Query: 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNS 159
++ +FL ++ + P++ T VI+A+ ++GQ+IH F D I +
Sbjct: 299 EEALCMFLDML-DLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCA 357
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKP 218
L++ YA GD A F + KKD ++W +I G G +A+ +++ M E N P
Sbjct: 358 LVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATP 417
Query: 219 DEVTMVVVLSACAKKRDLEFG 239
D +T + VL AC+ +E G
Sbjct: 418 DGITYLGVLYACSHIGLVEEG 438
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 110/229 (48%), Gaps = 22/229 (9%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTF---SSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+H ++ T F + Y ++ C L + + Y ++F+ IPQ N+ W +LI +
Sbjct: 129 VHGFVVKTGFEVNMYVST-----CLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGF 183
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED------ 152
+++ + F ++ N NE + ++ A R G+ HG +
Sbjct: 184 VNNNRFSDAIEAFREMQSNGVK-ANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPY 242
Query: 153 -------DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
+++++ SLI YA CGDL A +F + ++ +VSWNS+I+G+ + G E+A+
Sbjct: 243 FQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEAL 302
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++ +M + PD+VT + V+ A + + G + +++ K G D
Sbjct: 303 CMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKD 351
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 130/245 (53%), Gaps = 17/245 (6%)
Query: 11 IPRHPNPTTLTVNNGHQR---HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL 67
IP +P+ T N HQR ++ QLK++HA L T + P + LF +
Sbjct: 24 IPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTY---PEEPATLFLYGKI 80
Query: 68 ----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS-DEPIQSFMIFLQLVYNSPYFP 122
S+FS + YA ++FD I + + WNTLIRA + ++FM++ +++ P
Sbjct: 81 LQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSP 140
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
++ T PFV+KA A F G+ +H F D+ ++N LIH Y CG L +A VF
Sbjct: 141 DKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 200
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ ++ +VSWNSMI V G ++ A++L+REM+ + +PD TM VLSACA L
Sbjct: 201 DEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLS 259
Query: 238 FGIWV 242
G W
Sbjct: 260 LGTWA 264
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 14/204 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H Q++ F D Y + L + L+ ARK+FD++P+ +L +WN++I A
Sbjct: 162 KQVHCQIVKHGFGGDVYVNNGLIH--LYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 219
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--------E 151
E + +F ++ + P+ +T+ V+ A A +G H
Sbjct: 220 RFGEYDSALQLFREM--QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 277
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+++ NSLI Y CG L MA VF + K+D+ SWN+MI GF G E+A+ + M
Sbjct: 278 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 337
Query: 212 --EVENVKPDEVTMVVVLSACAKK 233
+ ENV+P+ VT V +L AC +
Sbjct: 338 VDKRENVRPNSVTFVGLLIACNHR 361
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 130/245 (53%), Gaps = 17/245 (6%)
Query: 11 IPRHPNPTTLTVNNGHQR---HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL 67
IP +P+ T N HQR ++ QLK++HA L T + P + LF +
Sbjct: 33 IPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTY---PEEPATLFLYGKI 89
Query: 68 ----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS-DEPIQSFMIFLQLVYNSPYFP 122
S+FS + YA ++FD I + + WNTLIRA + ++FM++ +++ P
Sbjct: 90 LQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSP 149
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
++ T PFV+KA A F G+ +H F D+ ++N LIH Y CG L +A VF
Sbjct: 150 DKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 209
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ ++ +VSWNSMI V G ++ A++L+REM+ + +PD TM VLSACA L
Sbjct: 210 DEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLS 268
Query: 238 FGIWV 242
G W
Sbjct: 269 LGTWA 273
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 14/204 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H Q++ F D Y + L + L+ ARK+FD++P+ +L +WN++I A
Sbjct: 171 KQVHCQIVKHGFGGDVYVNNGLIH--LYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 228
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--------E 151
E + +F ++ + P+ +T+ V+ A A +G H
Sbjct: 229 RFGEYDSALQLFREM--QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 286
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+++ NSLI Y CG L MA VF + K+D+ SWN+MI GF G E+A+ + M
Sbjct: 287 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 346
Query: 212 --EVENVKPDEVTMVVVLSACAKK 233
+ ENV+P+ VT V +L AC +
Sbjct: 347 VDKRENVRPNSVTFVGLLIACNHR 370
>gi|255561106|ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539243|gb|EEF40836.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 338
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 135/255 (52%), Gaps = 40/255 (15%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP-QPNLYTWNTLIR 96
+LK+IHAQM T + + S+L A +L YA+ +FD + +PN Y WN ++R
Sbjct: 25 ELKQIHAQMFKTGSVLETITISELQAFAASPNSGNLTYAKIVFDSLSSRPNTYIWNAMLR 84
Query: 97 AYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
Y+ S++P ++ +++ Q++ +S P+ N +T PF++KA + Q +H F
Sbjct: 85 GYADSNKPEEALILYHQMLCHSVPH--NGYTFPFLLKACSSLSAIEKAQQVHAQIIKLGF 142
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS-------------------- 190
D+ +NSL+H YA G + A +F I D VSWNS
Sbjct: 143 GSDVYTTNSLLHAYAASGFIESARIIFDRIPHPDTVSWNSIIDGYVKCGETETAYELFKD 202
Query: 191 -----------MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
MISG V+ G ++A++L++EM++ +KPD++ + VLSACA L+ G
Sbjct: 203 MPEKNAISFTVMISGHVQAGLDKEALDLFQEMQIAGIKPDKIVLTNVLSACAHLGALDQG 262
Query: 240 IWVSSHIEKNGIKMD 254
W+ ++I+KN +++D
Sbjct: 263 RWIHTYIKKNDVQID 277
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 40/215 (18%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+ ++ +++HAQ++ F D Y+ + L A S F +E AR +FD+IP P+ +WN
Sbjct: 124 LSAIEKAQQVHAQIIKLGFGSDVYTTNSLLHAYAASGF--IESARIIFDRIPHPDTVSWN 181
Query: 93 TLIRAYSSSDEPIQSFMIF------------------------------LQLVYNSPYFP 122
++I Y E ++ +F Q + + P
Sbjct: 182 SIIDGYVKCGETETAYELFKDMPEKNAISFTVMISGHVQAGLDKEALDLFQEMQIAGIKP 241
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVF 177
++ L V+ A A G+ IH + D ++ +L YA CG + A VF
Sbjct: 242 DKIVLTNVLSACAHLGALDQGRWIHTYIKKNDVQIDPMLGCALTDMYAKCGSMQDALEVF 301
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKA---IELYR 209
KK V W ++I GF G +A ++LYR
Sbjct: 302 KKTRKKSVSLWTALIHGFAIHGRGREALYCLQLYR 336
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 168 GDLAMAYCVFVMIGKK-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
G+L A VF + + + WN+M+ G+ + E+A+ LY +M +V + T +
Sbjct: 58 GNLTYAKIVFDSLSSRPNTYIWNAMLRGYADSNKPEEALILYHQMLCHSVPHNGYTFPFL 117
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
L AC+ +E V + I K G D+
Sbjct: 118 LKACSSLSAIEKAQQVHAQIIKLGFGSDV 146
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 5/224 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+L++IHA ++ + A+KL CA+S SL YA+ +F Q+ P WN++IR
Sbjct: 18 KRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSIIR 77
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
++ S PI + + + Q+V +S P+ FT FV+KA R R + +HG ++
Sbjct: 78 GFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYD 137
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+++ +L+ Y+ G + +A VF + +D+V+WN+MIS F + G ++A++ Y +M
Sbjct: 138 ADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQM 197
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
ENV D T+V ++S+CA L G+ + +NG+ L
Sbjct: 198 RSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSL 241
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 8/210 (3%)
Query: 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+++ K +H ++ + D + L S + AR++FD++P +L WN +I
Sbjct: 121 ERKCKEVHGSVIRCGYDADVIVCTNLVK--CYSAMGLVCIARQVFDKMPARDLVAWNAMI 178
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMF 150
+S ++ + Q+ + + FTL +I + A +G +H
Sbjct: 179 SCFSQQGLHQEALQTYNQM-RSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGL 237
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ L + N+LI YA CG L A +F + +KD+ +WNSMI G+ G +AI +++
Sbjct: 238 DQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQ 297
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
M ++P+ VT + +L C+ + ++ G+
Sbjct: 298 MLEARIQPNPVTFLGLLCGCSHQGLVQEGV 327
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 41/280 (14%)
Query: 15 PNPTTLTVNNGHQRHPHFL----TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF 70
P+P T++ Q + L T K LK+IH+Q++ T D +AS++ CA S
Sbjct: 10 PSPATISKLISDQTYLSMLDKNCTTMKDLKKIHSQLIKTGLAKDTNAASRILAFCA-SPA 68
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+ YA +F QI PN++ WNT+IR +S S P S +++ ++ SP P T P V
Sbjct: 69 GDINYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSV 128
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG----------------- 168
KA A+ G +HG E+D I N+++ Y CG
Sbjct: 129 FKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDI 188
Query: 169 ------DLAMAYC--------VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +A C +F + ++ VSWNSMISG+V G F A+EL+++M+VE
Sbjct: 189 VAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVE 248
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++P E TMV +L+ACA + G W+ ++ K +++
Sbjct: 249 RIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELN 288
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 87/163 (53%), Gaps = 6/163 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ +R++FD++ N +WN++I Y + + +F Q + P+EFT+ ++
Sbjct: 204 VDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELF-QKMQVERIEPSEFTMVSLLN 262
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A R G+ IH FE + ++ ++I Y+ CG + A VF ++ +
Sbjct: 263 ACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSC 322
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
WNSMI G G +A++L+ ++ +++PD+V+ + VL+AC
Sbjct: 323 WNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTAC 365
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 141/273 (51%), Gaps = 56/273 (20%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++LK++HA ++ T D A+++ A S F + YA +FDQ+P+ N + WNT+IR
Sbjct: 29 RELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIR 88
Query: 97 AYSSS-DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----- 150
A + + D + + ++F Q++ + PN+FT P V+KA A + G+ +HG+
Sbjct: 89 ALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGL 148
Query: 151 -EDDLVISNSLIHFYAVCGDLAMAYCVF----------------------------VMI- 180
+D+ V++N L+ Y +CG + A +F VM+
Sbjct: 149 VDDEFVVTN-LLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVD 207
Query: 181 ------------------GKKDVVSWNSMISGFVEGGFFEKAIELY-REMEVENVKPDEV 221
++ VVSWN MISG+ + GF+++AIE++ R M++ +V P+ V
Sbjct: 208 GYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRV 267
Query: 222 TMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
T+V VL A ++ LE G WV + EKN I++D
Sbjct: 268 TLVSVLPAISRLGVLELGKWVHLYAEKNKIRID 300
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 5/169 (2%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ +L+ AR++FD++ Q ++ +WN +I Y+ + ++ IF +++ PN TL
Sbjct: 210 ARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTL 269
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A +R +G+ +H E D V+ ++L+ YA CG + A VF + +
Sbjct: 270 VSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQ 329
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+V++WN++I G G ME + P +VT + +LSAC+
Sbjct: 330 NNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACS 378
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 129/249 (51%), Gaps = 38/249 (15%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+LK+IHA ++ + +K+ C S ++YA +F Q+ PN++++N +IR
Sbjct: 22 ELKKIHAHIVKLSLSQSNFLVTKMLDLC--DNLSHVDYATMIFQQLENPNVFSYNAIIRT 79
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----ED 152
Y+ + + + +F Q++ P++FT PFVIK+ A + R+GQ +H +
Sbjct: 80 YTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKT 139
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS---------------------- 190
+ N+LI Y CGD++ AY V+ + ++D VSWNS
Sbjct: 140 HAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMP 199
Query: 191 ---------MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
MI+G+ GG + A+ ++REM+V ++PDE++++ VL ACA+ LE G W
Sbjct: 200 CRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKW 259
Query: 242 VSSHIEKNG 250
+ + EK+G
Sbjct: 260 IHKYSEKSG 268
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 15/179 (8%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTL 127
++ AR++FD++P + +W T+I Y+ + IF +Q+V P+E ++
Sbjct: 185 LGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVV---GIEPDEISV 241
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A+ VG+ IH F + + N+L+ YA CG + A+ +F + +
Sbjct: 242 ISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIE 301
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
KDV+SW++MI G G AI ++ +M+ V P+ VT V VLSACA G+W
Sbjct: 302 KDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHA-----GLW 355
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 133/255 (52%), Gaps = 39/255 (15%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++ IHAQM+ T Y+ SKL C +S F YA +FD I +PNL WNT+ R
Sbjct: 4 VRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRG 63
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
++ S +P+ + ++L ++ + P+ +T PF++K+ A+ + GQ IHG F+
Sbjct: 64 HALSSDPVSALKLYLVMI-SLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN----------------------- 189
D+ + SLI YA G L A VF + +DVVS+
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIP 182
Query: 190 --------SMISGFVEGGFFEKAIELYRE-MEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+MISG+VE G +++A+EL++E M + NV+PDE TMV V+SACA+ +E G
Sbjct: 183 GKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR 242
Query: 241 WVSSHIEKNGIKMDL 255
V S I +G +L
Sbjct: 243 HVHSWINDHGFASNL 257
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 102/181 (56%), Gaps = 5/181 (2%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A+K+FD+IP ++ +WN +I Y + ++ +F +++ + P+E T+ V+
Sbjct: 171 IESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVS 230
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A+ +G+ +H D +L I N+LI Y+ G++ A +F + KDV+S
Sbjct: 231 ACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVIS 290
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN++I G+ +++A+ L++EM P++VTM+ +L ACA ++ G W+ +I
Sbjct: 291 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIN 350
Query: 248 K 248
K
Sbjct: 351 K 351
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 10/181 (5%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S F +E A ++FD + ++ +WNTLI Y+ + ++ ++F +++ S PN+ T+
Sbjct: 268 SKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEML-RSGETPNDVTM 326
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDL--VISN------SLIHFYAVCGDLAMAYCVF-V 178
++ A A +G+ IH L V++N SLI YA CGD+ A VF
Sbjct: 327 LSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDS 386
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+ + + +WN+MISGF G A +++ M + ++PD++T V +LSAC+ L+
Sbjct: 387 SMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDL 446
Query: 239 G 239
G
Sbjct: 447 G 447
>gi|356528208|ref|XP_003532697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 444
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 10/226 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLIR 96
QL ++HA L T P+ S+ S+ SL +A F +P P L+ WNTLIR
Sbjct: 15 QLLQLHALFLKTSLDHHPFFISQFLLQ---SSTISLPFAASFFHSLPTLPPLFAWNTLIR 71
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
A++++ P S +F +L+ SP P+ FT PFV+KA AR +G +H + F
Sbjct: 72 AFAATPTPFHSLTLF-RLLQTSPLNPDNFTYPFVLKACARSSSLPLGGTLHSLTLKTGFR 130
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ N+L++ YA C + A VF + +DVVSW+S+I+ +V A ++REM
Sbjct: 131 SHRHVGNALLNMYAECYAVMSARMVFDEMTDRDVVSWSSLIAAYVASNSPLDAFYVFREM 190
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+EN +P+ VT+V +LSAC K +L G + S++ NGI+MD+
Sbjct: 191 GMENEQPNSVTLVSLLSACTKTLNLRVGESIHSYVTSNGIEMDVAL 236
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 99/183 (54%), Gaps = 7/183 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FD++ ++ +W++LI AY +S+ P+ +F +F ++ + PN TL ++ A
Sbjct: 152 ARMVFDEMTDRDVVSWSSLIAAYVASNSPLDAFYVFREMGMENEQ-PNSVTLVSLLSACT 210
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ + RVG++IH E D+ + +L YA CG++ A VF +G K++ S
Sbjct: 211 KTLNLRVGESIHSYVTSNGIEMDVALGTALFEMYAKCGEIDKALLVFNSMGDKNLQSCTI 270
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG-IWVSSHIEKN 249
MIS + G + I L+ +ME ++ D ++ V+LSAC+ ++ G ++ +
Sbjct: 271 MISALADHGREKDVISLFTQMEDGGLRLDSLSFAVILSACSHMGLVDEGKMYFDRMVRVY 330
Query: 250 GIK 252
GIK
Sbjct: 331 GIK 333
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 131/238 (55%), Gaps = 15/238 (6%)
Query: 27 QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP 86
QR T+ +K +HAQ++ DP S S++ ALS SL A +F+QI +P
Sbjct: 18 QRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP-QSLPKAHFVFNQIQRP 76
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP----NEFTLPFVIKAAARPVQFRV 142
L WN +I S SD P + YN+ Y+ + T F+ K+ AR R
Sbjct: 77 TLLVWNHMIHGLSKSDRPNDAIHF-----YNTMYYKGIQGSHLTFIFLFKSCARVSDVRQ 131
Query: 143 GQAI--HGM---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
GQ + H M FE L +SN+LIH Y G+LAMA VF + ++DVVSWNS+I G+ +
Sbjct: 132 GQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQ 191
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
F+K ++L+REM+ NV+ D VTM+ +SA + E G ++ +I+++G+ +DL
Sbjct: 192 FNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDL 249
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 6/175 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+L A+K+F+++P ++ +W ++I YS + + ++ +F +++ S P+E T+
Sbjct: 294 GNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMV-SMVKPDEITVATA 352
Query: 131 IKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A G+A+H + D+ + NSLI Y CG + A VF + +D
Sbjct: 353 LSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDS 412
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
VSW S+ISG GF E A+ ++ +M E + P T V VL ACA ++ G+
Sbjct: 413 VSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGV 467
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 120/259 (46%), Gaps = 47/259 (18%)
Query: 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTW 91
Q Q+ R+H+ L F+ Y LF AL F L A+K+FD + + ++ +W
Sbjct: 131 QGQMVRVHSMKLG----FESY----LFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSW 182
Query: 92 NTLIRAYSSSDEPIQSFMIFLQL--------------VYNSPYFPNEFTL-PFVIKA--- 133
N++I Y + + +F ++ ++ F +E+ + +++K
Sbjct: 183 NSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDE 242
Query: 134 -----------------AARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
R + G+ + M E ++V N++I YA G+L A +
Sbjct: 243 HGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKL 302
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + +DV+SW SMI G+ +A++L++EM V VKPDE+T+ LSACA L
Sbjct: 303 FNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSL 362
Query: 237 EFGIWVSSHIEKNGIKMDL 255
+ G V +I K+ IK D+
Sbjct: 363 DAGEAVHDYIRKHDIKSDV 381
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 123/222 (55%), Gaps = 7/222 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+K++HA ++ + Y+ SK+ AL S L A K+F QI P + WNTL+R
Sbjct: 857 VKKLHAHLVVSGLHNCQYAMSKVIRLYALHQ-SDLVSAHKVFKQIESPTTFLWNTLLRGL 915
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ SD P + ++F + P+ T PFV+KA A+ + G+ +H F D
Sbjct: 916 AQSDAP-KDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLD 974
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ +SNSLI+ YA CG LA A VF + KDVVSWNS+I G+ + ++ + L++ M+
Sbjct: 975 IFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQA 1034
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E V+ D+VTMV V+SAC D + +IE N I++D+
Sbjct: 1035 EEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDV 1076
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 103/188 (54%), Gaps = 9/188 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + +L A+K+FDQIP +L +W+++I AYS + S +F Q+ + P+
Sbjct: 1116 AYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQM-QRAKVKPDAV 1174
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+ V+ A A +G+ IH + D ++ NSLI +A CG + A VF +
Sbjct: 1175 VIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDM 1234
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+KD +SWNS+I G GF ++A++++ M E +P+EVT + VL ACA ++ +E G+
Sbjct: 1235 EEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGL 1294
Query: 241 WVSSHIEK 248
H E+
Sbjct: 1295 ---DHFER 1299
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 45/261 (17%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K+ +++H ++ F D + ++ L + C +L AR +F+++ ++ +WN+
Sbjct: 957 KEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACG-----ALACARSVFNEMLVKDVVSWNS 1011
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-----HG 148
LI YS + ++ + +L+ ++ T+ VI A + + + H
Sbjct: 1012 LIGGYSQHNR-LKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHN 1070
Query: 149 MFEDDLVISNSLIHFY-------------------------------AVCGDLAMAYCVF 177
E D+ + N+LI +Y A G+L A +F
Sbjct: 1071 HIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIF 1130
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
I KD++SW+SMI + + F ++EL+R+M+ VKPD V + VLSACA L+
Sbjct: 1131 DQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALD 1190
Query: 238 FGIWVSSHIEKNGIKMDLTFE 258
G W+ ++ +N IK D E
Sbjct: 1191 LGKWIHDYVRRNNIKADTIME 1211
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+ + +EYAR +FDQ+P N+ +W LI Y+ + ++ + ++ P+E
Sbjct: 554 GFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGG-ISPSEI 612
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVF-VM 179
T+ VI A + +G+ ++G E D + NSLI YA G + + VF M
Sbjct: 613 TVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEM 672
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++++VSW S+ISGF G +A+EL+ EM +KP+ +T + V++AC+ +E G
Sbjct: 673 LDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQG 732
Query: 240 I 240
+
Sbjct: 733 L 733
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 108/276 (39%), Gaps = 49/276 (17%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
P P + T +G L ++ + Q LS YS++ A S+
Sbjct: 383 PPPASATSASGLWAPVSRLCPRRSSSGLRHQALS-------YSSTAPVPATARSSTPPSR 435
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
A K+FDQ P P W ++AYS P+++ +F + F FV+KA
Sbjct: 436 TALKVFDQSPAP----WRAFLKAYSHGPFPLEALHLFKHA--RQHLADDTFVFTFVLKAC 489
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A R G +H + FE + +LI+ Y + L A VF + K+VVSWN
Sbjct: 490 AGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWN 549
Query: 190 SMISGFVEGG-------------------------------FFEKAIELYREMEVENVKP 218
MI+GF G + +A+ L R M + P
Sbjct: 550 VMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISP 609
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E+T++ V+ A + + G ++ + EK GI D
Sbjct: 610 SEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSD 645
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 144/315 (45%), Gaps = 86/315 (27%)
Query: 20 LTVNNGH--QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYAR 77
L VN H R ++ + LK +HAQ++ + + KL + CA+ L+YA+
Sbjct: 109 LNVNGSHCPARLCEKCSSMRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQ 168
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
+MFDQIPQPN + +N+LIR YS+SD+PI + ++F +++ S PNEFTLPFV+KA
Sbjct: 169 RMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMIC-SGLSPNEFTLPFVLKACGCK 227
Query: 138 VQFRVGQAIHG--------------------------------MFED------------- 152
+ +HG +F+D
Sbjct: 228 SAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMI 287
Query: 153 -------DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV-------------------- 185
D+++ N+L YA CG+L A +F +K+V
Sbjct: 288 EITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVAR 347
Query: 186 -----------VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
VSWNSMIS ++ G + +A++L+ +M V PDE T+V +L+AC++
Sbjct: 348 QIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLG 407
Query: 235 DLEFGIWVSSHIEKN 249
DL G + ++I N
Sbjct: 408 DLVMGKKIHNYILSN 422
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + S+E AR++FDQ+P N+ +WN++I Y + ++ +F ++ NS P+E
Sbjct: 336 AYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKM-RNSRVVPDEA 394
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMI 180
TL ++ A ++ +G+ IH + + + NSLI YA CG + A +F+ +
Sbjct: 395 TLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEM 454
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
K++VSWN +I G +AI+L+ EM+ + PDE+T+ +LSAC+ ++ G+
Sbjct: 455 PGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGL 514
Query: 241 W 241
+
Sbjct: 515 Y 515
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 38/221 (17%)
Query: 61 LFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
L C +S F L YA +F+ I +PNL WNT++R ++SS +P+ + +++++V +
Sbjct: 1 LLELCVVSPHFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMV-SLG 59
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIH-------------------------GMFED-- 152
+ PN ++ PF++K+ A+ F G+ IH G ED
Sbjct: 60 HLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDAR 119
Query: 153 ---------DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
D+V +LI YA GD A VF I ++DVVSWN+MI+G+VE G +E+
Sbjct: 120 KVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEE 179
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
A+EL++EM NV+PDE T+V V+SACA+ +E G V S
Sbjct: 180 ALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHS 220
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 122/249 (48%), Gaps = 25/249 (10%)
Query: 25 GHQRHPHFLTNQKQLKR-IHAQMLS----------TDFFFDPYSASKLFTPCAL----ST 69
G Q H L L R +H ++S FD S + + AL ++
Sbjct: 83 GRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYAS 142
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
ARK+FD+I + ++ +WN +I Y + ++ +F +++ + P+E TL
Sbjct: 143 RGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMM-RTNVRPDEGTLVS 201
Query: 130 VIKAAARPVQFRVGQAIHGM---------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
V+ A A+ +G+ +H F L I N+LI Y+ CGD+ A+ +F +
Sbjct: 202 VVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGL 261
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
KDVVSWN++I G+ +++A+ L++EM P++VT++ VL ACA ++ G
Sbjct: 262 SCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGR 321
Query: 241 WVSSHIEKN 249
W+ +I+K
Sbjct: 322 WIHVYIDKK 330
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C +E A +F+ + ++ +WNTLI Y+ ++ ++ ++F +++ S
Sbjct: 244 LYSKCG-----DVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEML-RSGE 297
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMA 173
PN+ TL V+ A A +G+ IH + L + SLI YA CGD+ A
Sbjct: 298 CPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAA 357
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+ VF + + + SWN+MI GF G A +L+ M V+PD++T V +LSAC+
Sbjct: 358 HQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHS 417
Query: 234 RDLEFG 239
L+ G
Sbjct: 418 GLLDLG 423
Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L A VF I + +++ WN+M+ G A+E+Y M P+ + +L +
Sbjct: 14 LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73
Query: 230 CAKKRDLEFGIWVSSHIEKNGIKMD 254
CAK + E G + + + K G +D
Sbjct: 74 CAKSKAFEEGRQIHAQVLKLGCGLD 98
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 13/230 (5%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSAS--KLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
+T+ Q ++HA++L + + + KLFT ALS L YAR + + PN +
Sbjct: 3 ITSMTQAMQLHARILKSGAYDSNHGQDFHKLFTFSALSPSGDLNYARHILRTLHTPNSFY 62
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPY-----FPNEFTLPFVIKAAARPVQFRVGQA 145
+NT+IRAYS S +P ++F +FL + P+ FT PFV+KA ++ R G+
Sbjct: 63 YNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGKQ 122
Query: 146 IHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
IHG+ D I+N+LIH Y+V G+ +AY VF + +DVVSW S+I GFV+
Sbjct: 123 IHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDNDR 182
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI-EKN 249
+AI L+ M ++P+EVT+ VL ACA L G + S + EKN
Sbjct: 183 PIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKN 232
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 8/218 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH + + D Y + L ++S +L Y K+FD++P ++ +W ++I +
Sbjct: 121 KQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAY--KVFDKMPDRDVVSWTSIIDGFV 178
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+D PI++ +F ++ N PNE T+ V++A A G+ IH F +
Sbjct: 179 DNDRPIEAIRLFTHMIENG-IEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNA 237
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+S +LI YA CG + A VF +KDV W ++I+G G KAIE + M+
Sbjct: 238 NVSTALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKS 297
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+VK DE + VLSA + G+ ++K+ IK
Sbjct: 298 DVKMDERAITAVLSAYRNAGLVSEGLLFFRRLKKHKIK 335
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 25/227 (11%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N ++L++IH QML T D ASKL CA SL YAR +FD+I +PN + WNT
Sbjct: 29 SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNT 88
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+IR YS+S EP ++ +++ ++Y+S P+ N +T PF++KA + Q IH
Sbjct: 89 MIRGYSNSKEPEEALLLYHHMLYHSVPH--NAYTFPFLLKACSSMSALEETQQIHAHIIK 146
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F ++ +NSL++ Y+ GD+ A +F + ++D +A+ L
Sbjct: 147 MGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT-----------------EALNL 189
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ M+ +K D V +V L ACA L+ G W+ ++I+K+ I++D
Sbjct: 190 FHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEID 236
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 25/200 (12%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ ++IHA ++ F + Y+ + L S ++ AR +FDQ+ Q + N R
Sbjct: 135 EETQQIHAHIIKMGFGSEIYTTNSLLN--VYSKSGDIKSARLLFDQVDQRDTEALNLFHR 192
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----E 151
+Q+ I L + L ++A A G+ IH E
Sbjct: 193 --------MQTAGIKL----------DNVALVSTLQACADLGVLDQGKWIHAYIKKHEIE 234
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D ++ LI YA CGDL A VF + +K V W +MISG+ G +A+E + +M
Sbjct: 235 IDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKM 294
Query: 212 EVENVKPDEVTMVVVLSACA 231
+ V+P+++T +L+AC+
Sbjct: 295 QTAGVEPNQMTFTGILTACS 314
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 140/263 (53%), Gaps = 20/263 (7%)
Query: 3 TLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQK---QLKRIHAQMLSTDFFFDPYSAS 59
+ST S+P T T P L N K +LK H + D + +
Sbjct: 16 AISTSKPSLPNQSKRTKAT--------PSSLKNCKTIDELKMFHLSLTKQGLDDDVSAIT 67
Query: 60 KLFT-PCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117
KL C L T SL +A+++F+ + +N+LIR Y+SS ++ ++F++++ N
Sbjct: 68 KLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMM-N 126
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAM 172
S P+++T PF + A+ G IHG+ + DL + NSL+HFYA CG+L
Sbjct: 127 SGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDC 186
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL-YREMEVENVKPDEVTMVVVLSACA 231
A VF + +++VVSW SMI G+ F + A++L +R + E+V P+ VTMV V+SACA
Sbjct: 187 ARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACA 246
Query: 232 KKRDLEFGIWVSSHIEKNGIKMD 254
K DLE G V I +GI+++
Sbjct: 247 KLEDLETGEKVYDFIRDSGIEVN 269
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 110/219 (50%), Gaps = 15/219 (6%)
Query: 41 RIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+IH ++ D+ D + + L + C L+ ARK+FD++ + N+ +W ++I
Sbjct: 154 QIHGLIIKMDYAKDLFVQNSLVHFYAECG-----ELDCARKVFDEMSERNVVSWTSMICG 208
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED----- 152
Y+ + + +F ++V + PN T+ VI A A+ G+ ++ D
Sbjct: 209 YARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEV 268
Query: 153 -DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL+IS +L+ Y C + +A +F G ++ N+M S +V G ++A+ + M
Sbjct: 269 NDLMIS-ALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLM 327
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
++PD ++M+ +S+C++ R++ +G ++ +NG
Sbjct: 328 MDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNG 366
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 38/224 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++++ A+++FD+ NL N + Y ++ + L L+ +S P+ ++
Sbjct: 284 NAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGV-LNLMMDSGIRPDRISMLSA 342
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I + ++ G++ HG FE I N+LI Y C A+ +F + K V
Sbjct: 343 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 402
Query: 186 VSWNSMISGFVEGG-------------------------------FFEKAIELYREMEV- 213
V+WNS+++G++E G +E+AIE++ M+
Sbjct: 403 VTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQ 462
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
E V D VTM+ + SAC L+ W+ +IEKN I++D+
Sbjct: 463 ECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRL 506
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 5/181 (2%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ A + F+ +P+ N+ +WNT+I A + ++ +F + + T+ +
Sbjct: 418 VDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIAS 477
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + + I+ E D+ + +L+ ++ CGD A +F + +DV +
Sbjct: 478 ACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSA 537
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W + I G E+AIEL+ EM + +KPD V + L+AC ++ G + + +E
Sbjct: 538 WTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSME 597
Query: 248 K 248
K
Sbjct: 598 K 598
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 129/227 (56%), Gaps = 13/227 (5%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDP----YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
++Q +LK+IHA S P ++ +F +LS + + +A ++F+QI PN++
Sbjct: 46 SSQSKLKQIHA--FSIRHGVPPQNPDFNKHLIFALVSLS--APMSFAAQIFNQIQAPNIF 101
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TWNT+IR ++ S+ P + +F Q+ S P+ T PF+ KA A+ + +G+ IH +
Sbjct: 102 TWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSV 161
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
F+ + NSL+H Y+V G AY VF ++ +D V+WNS+I+GF G +A
Sbjct: 162 VVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEA 221
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ LYREM E V+PD TMV +LSAC + L G V ++ K G+
Sbjct: 222 LTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGL 268
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 22/206 (10%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S F E A ++F+ + + WN++I ++ + P ++ ++ ++ + P+ FT+
Sbjct: 182 SVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREM-GSEGVEPDGFTM 240
Query: 128 PFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
++ A +G+ +H G+ ++ SN+L+ Y+ CG+ A VF +
Sbjct: 241 VSLLSACVELGALALGERVHMYMVKVGLVQNQHA-SNALLDLYSKCGNFRDAQKVFDEME 299
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA---------- 231
++ VVSW S+I G G +A++L+ E+E + +KP E+T V VL AC+
Sbjct: 300 ERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFN 359
Query: 232 --KKRDLEFGIWVSSHIEKNGIKMDL 255
++ E+GI IE +G +DL
Sbjct: 360 YFRRMKEEYGIL--PRIEHHGCMVDL 383
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 47/284 (16%)
Query: 18 TTLTVNNGHQRHPHFLTNQK-----QLKRIHAQMLSTDFFFDPYSASKLFTPCAL-STFS 71
+ + +N +HP Q LK IH +L T D + AS+L C STF+
Sbjct: 2 SNIVLNTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFN 61
Query: 72 S----LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
L YA +F QI PNL+ +N LIR +S+ EP ++F + Q++ S +P+ T
Sbjct: 62 KPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQML-KSRIWPDNITF 120
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
PF+IKA++ VG+ H F++D+ + NSL+H YA CG +A A +F +G
Sbjct: 121 PFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGF 180
Query: 183 KDVVSWNSMISGFVEGGF-------------------------------FEKAIELYREM 211
+DVVSW SM++G+ + G FEKAI+L+ M
Sbjct: 181 RDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM 240
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ E V +E MV V+S+CA LEFG ++ K+ + ++L
Sbjct: 241 KREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNL 284
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 92/182 (50%), Gaps = 6/182 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E AR+MFD++P NL+TW+ +I Y+ ++ ++ +F + + NE + VI
Sbjct: 199 VENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF-EFMKREGVVANETVMVSVIS 257
Query: 133 AAARPVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ A G+ + +L++ +L+ + CGD+ A VF + + D +S
Sbjct: 258 SCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLS 317
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W+S+I G G KA+ + +M P +VT VLSAC+ +E G+ + +++
Sbjct: 318 WSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMK 377
Query: 248 KN 249
K+
Sbjct: 378 KD 379
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 126/256 (49%), Gaps = 39/256 (15%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCA--LSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
LK IHA M+ T D ++AS+L C S S ++YA ++F QI PNL+ +N +I
Sbjct: 32 HLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMI 91
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
R +S S P Q+F ++Q P+ T PF++K+ + +G HG F
Sbjct: 92 RGHSGSKNPDQAFHFYVQ-SQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGF 150
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG----------- 199
E D+ + NSL+H YA GD A +F + DVVSW SMI GF + G
Sbjct: 151 EKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQ 210
Query: 200 --------------------FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
F+KA+EL++ ++ + V+ +E MV V+S+CA LE G
Sbjct: 211 MPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELG 270
Query: 240 IWVSSHIEKNGIKMDL 255
++ KNG+ ++L
Sbjct: 271 ERAHDYVVKNGMTLNL 286
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 100/185 (54%), Gaps = 8/185 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E ARK+FDQ+P+ NL TW+T+I Y+ ++ ++ +F +++ + NE + V
Sbjct: 199 GDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELF-KVLQSQGVRANETVMVSV 257
Query: 131 IKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
I + A +G+ H GM +L++ +L+ YA CG + A VF + ++D
Sbjct: 258 ISSCAHLGALELGERAHDYVVKNGM-TLNLILGTALVDMYARCGSIDKAVWVFEDLPERD 316
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+SW ++I+G G+ E++++ + M + P ++T VLSAC+ +E G +
Sbjct: 317 TLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFE 376
Query: 245 HIEKN 249
++++
Sbjct: 377 SMKRD 381
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 133/227 (58%), Gaps = 11/227 (4%)
Query: 37 KQLKRIHAQMLSTDFF-FDPYS-ASKLF-TPCALSTFSSLEYARKMF--DQIPQPNLYTW 91
K+LK++H M+ P S +KL + + T SL+YAR F D +L+ +
Sbjct: 39 KELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMY 98
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
N LIR Y+S+ Q+ ++++Q++ P+++T PF++ A ++ + G +HG
Sbjct: 99 NCLIRGYASAGLGDQAILLYVQMLVMG-IVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
E D+ +SNSLIHFYA CG + + +F + +++VVSW S+I+G+ ++A+
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVS 217
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
L+ +M V+P+ VTMV V+SACAK +DLE G V S+I + G+++
Sbjct: 218 LFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMEL 264
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 37/218 (16%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD+ NL +NT++ Y + +I +++ P P++ T+ I A A
Sbjct: 285 ARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPR-PDKVTMLSTIAACA 343
Query: 136 RPVQFRVGQAIHG-MFEDDLV----ISNSLIHFYAVCG---------------------- 168
+ VG++ H + + L ISN++I Y CG
Sbjct: 344 QLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNS 403
Query: 169 ---------DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
D+ +A+ +F + ++D+VSWN+MI V+ FE+AIEL+REM+ + + D
Sbjct: 404 LIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGD 463
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
VTMV + SAC L+ WV ++IEKN I +DL
Sbjct: 464 RVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQL 501
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 111/221 (50%), Gaps = 16/221 (7%)
Query: 41 RIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++H +L D + ++ L + C ++ RK+FD + + N+ +W +LI
Sbjct: 151 QVHGAVLKMGLEGDIFVSNSLIHFYAECG-----KVDLGRKLFDGMLERNVVSWTSLING 205
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFE 151
YS D ++ +F Q+ + PN T+ VI A A+ +G+ + GM E
Sbjct: 206 YSGRDLSKEAVSLFFQM-GEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGM-E 263
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ N+L+ Y CGD+ A +F K++V +N+++S +V + + + EM
Sbjct: 264 LSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEM 323
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+ +PD+VTM+ ++ACA+ DL G +++ +NG++
Sbjct: 324 LQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLE 364
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 13/191 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAY---SSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+E A ++FD++ + +L +WNT+I A S +E I+ F + + N + T+
Sbjct: 412 GDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELF----REMQNQGIPGDRVTM 467
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A + + + E DL + +L+ ++ CGD + A VF + K
Sbjct: 468 VGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEK 527
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DV +W + I G E AIEL+ EM + VKPD+V V +L+AC+ ++ G +
Sbjct: 528 RDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQL 587
Query: 243 SSHIEK-NGIK 252
+EK +GI+
Sbjct: 588 FWSMEKAHGIR 598
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+N +I G+ G ++AI LY +M V + PD+ T +LSAC+K L G+ V +
Sbjct: 98 YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157
Query: 248 KNGIKMDL 255
K G++ D+
Sbjct: 158 KMGLEGDI 165
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 130/258 (50%), Gaps = 38/258 (14%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
TN K L++IHA ++ T +AS++ T CA S+ + YA +F IP PNLY WNT
Sbjct: 36 TNMKDLQKIHAHIIKTGLAHHTVAASRVLTFCA-SSSGDINYAYLLFTTIPSPNLYCWNT 94
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IR +S S P + +F+ ++ +S P T P V KA A+ G +HG
Sbjct: 95 IIRGFSRSSTPHLAISLFVDMLCSS-VLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKL 153
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV----------------------- 185
E D I N++I+ YA G L+ A VF + DV
Sbjct: 154 GLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLF 213
Query: 186 --------VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
V+WNSMISG+V +A+EL+R+M+ E V+P E TMV +LSACA L+
Sbjct: 214 DNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALK 273
Query: 238 FGIWVSSHIEKNGIKMDL 255
G WV ++++ ++++
Sbjct: 274 HGEWVHDYVKRGHFELNV 291
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 12/181 (6%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L+ ++ +R++FD +P TWN++I Y + +++ +F ++ P+EF
Sbjct: 199 GLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKM-QGERVEPSEF 257
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ ++ A A + G+ +H G FE ++++ ++I Y CG + A VF
Sbjct: 258 TMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEAS 317
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC------AKKR 234
+ + WNS+I G G+ KAIE + ++E ++KPD V+ + VL+AC K R
Sbjct: 318 PTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKAR 377
Query: 235 D 235
D
Sbjct: 378 D 378
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCAL-STFSSLEYARKMFDQIPQPNLYTWNTLI 95
KQ +IHAQ + +S S+L + +L + L+++R +F QI PNL+ WNT+I
Sbjct: 23 KQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMI 82
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
R YS SD P ++ ++++ ++ PN FT PF++ + AR G +H F
Sbjct: 83 RGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGF 142
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E DL + N+LIH Y+V G+L +A +F +D+VS+N+MI G+ E E A+ L+ E
Sbjct: 143 ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGE 202
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
M+ + PDE T V + S C+ + G + + + KN +D
Sbjct: 203 MQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSID 246
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 44/236 (18%)
Query: 59 SKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
S LF AL S F +L AR +FD+ +L ++NT+I+ Y+ ++P + +F ++
Sbjct: 144 SDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEM 203
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-------FEDDLVISNSLIHFYAVC 167
NS P+EFT + + + VG+ IH + ++++ ++++ YA C
Sbjct: 204 -QNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKC 262
Query: 168 GDLAMAYCVFVMIG--------------------------------KKDVVSWNSMISGF 195
G + +A VF +G ++DV+SW +MISG+
Sbjct: 263 GLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGY 322
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ G +A+EL++EME +KPDEVT+V VLSACA+ + G + +NG+
Sbjct: 323 SQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGV 378
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 33/246 (13%)
Query: 23 NNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYS-------ASKLFTP----------- 64
N G Q H N L+ I + +L D Y+ A ++F+
Sbjct: 229 NVGKQIHAQVYKN---LRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWS 285
Query: 65 ---CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
C + + ARK+F+ + + ++ +W +I YS + + ++ +F ++
Sbjct: 286 SMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIK- 344
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYC 175
P+E TL V+ A AR F +G+ ++ G+F + +++ +++ YA CG + A
Sbjct: 345 PDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALE 404
Query: 176 VFVMIGK--KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+F +GK K +NSMI+G + G E AI ++RE+ +KPDEVT V VL AC
Sbjct: 405 IFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHS 464
Query: 234 RDLEFG 239
+E G
Sbjct: 465 GLIEEG 470
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGD---LAMAYCVFV 178
P+ L K+ + +Q ++G+ IS LI F+++ G L + +F
Sbjct: 10 PSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISR-LISFFSLLGSKDGLDHSRLLFS 68
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDLE 237
I ++ WN+MI G+ +AI LY M + + P + T +L++CA+ LE
Sbjct: 69 QIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLE 128
Query: 238 FGIWVSSHIEKNGIKMDL 255
G V SHI K+G + DL
Sbjct: 129 PGHEVHSHIIKHGFESDL 146
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 136/255 (53%), Gaps = 39/255 (15%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q+K+ HA +++T P +A+KL S+F SL YA ++FDQIP+P+++ +NT+I+A
Sbjct: 30 QIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKA 89
Query: 98 YSS-SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV------QFRVGQAIHGMF 150
++ S IFL +V S + PN +T FV KA + Q RV AI
Sbjct: 90 HAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRV-HAIKIGL 148
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVF------------VMIG----------------- 181
E +L ++N++I YA G + A VF +MIG
Sbjct: 149 ESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDE 208
Query: 182 --KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++DVVSW ++I+G+V+ G F++A++L+ EM P+E T+ L+ACA L+ G
Sbjct: 209 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQG 268
Query: 240 IWVSSHIEKNGIKMD 254
W+ +I+K+ IKM+
Sbjct: 269 RWIHVYIDKSEIKMN 283
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 8/171 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A++MFD++ + ++ +W T+I Y ++ +F +++ P PNEFTL + A A
Sbjct: 202 AKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPP-PNEFTLASALAACA 260
Query: 136 RPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVF--VMIGKKDVVSW 188
V G+ IH + + N SL+ YA CG++ A VF K V W
Sbjct: 261 NLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPW 320
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
N+MI G+ G ++AI+L+ +M+VE V P++VT V +L+AC+ + +E G
Sbjct: 321 NAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEG 371
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 130/229 (56%), Gaps = 6/229 (2%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T+ QLK+IHAQM+ + D Y+AS+L + CALS L YA ++F+ +PN + WNT
Sbjct: 39 TSMHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRLFNNTQEPNSFMWNT 98
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
LIRA++SS P ++ ++++ + P + T PF++KA + + +H
Sbjct: 99 LIRAHASSLNPSEALLLYVDM-RRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKF 157
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ +L + N L+ Y+V D+ A VF + ++ + W +MISG+ + +A+EL+
Sbjct: 158 GLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEALELF 217
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+M VE ++P+ T+ VLSACA+ L+ G + +E+ GI++ +
Sbjct: 218 DQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVIL 266
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 104/204 (50%), Gaps = 8/204 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H +L + + + L A S + AR++FD++ + +L W T+I Y+
Sbjct: 149 QVHTHVLKFGLDLNLHVVNGLVR--AYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQ 206
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLV 155
+ ++ +F Q++ PN TL V+ A A+ +G+ IH E+ ++
Sbjct: 207 NYCSNEALELFDQMIVEG-LEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVI 265
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ +L+H YA G + MA +F I +++ +WN+MI G G ++A++ + ++E E
Sbjct: 266 LGTALVHMYAKNGAILMAQKLFDXISERNTATWNAMICGLAVHGHAKEALDRFWKLEKEQ 325
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG 239
+ P+++T V VLSAC L G
Sbjct: 326 IVPNDITFVGVLSACCHAGLLSVG 349
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 125/221 (56%), Gaps = 7/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +HA ++ T DP+ S + +LS+ ++L A +F+QI P L WN +IR S
Sbjct: 34 KELHAHLIRTQLHTDPFLMSDVIRSYSLSS-TNLHKAHLVFNQIECPTLVVWNHMIRGLS 92
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
SD P+++ ++ ++ ++ N TL F+ KA AR G+ IH FE L
Sbjct: 93 QSDHPVEAIHMYTRM-HHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYL 151
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+SN+LIH YA+CG L A +F + +D+VSWN++I G+ + +++ + L+ M
Sbjct: 152 FVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAA 211
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
N+K D VTMV ++ AC+ D EF + +I++N +++D+
Sbjct: 212 NIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDV 252
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ +L ARK+FD +P+ ++ +W ++I YS + + + +F +++ + P++ T+
Sbjct: 294 AKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMA-AKVKPDKVTV 352
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A + VG A+H + D+ + NSLI Y CG + A VF +
Sbjct: 353 ASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKD 412
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
KD VSW S+ISG GF A++L+ +M E V+P T V +L ACA
Sbjct: 413 KDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACA 461
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 45/255 (17%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLI 95
++IH L F S LF AL + L +A+KMFD + +L +WNTLI
Sbjct: 136 RKIHVHALKLGF------ESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLI 189
Query: 96 RAYSSSDEPIQSFMIF---------------LQLVYNSPYFPN-EFTLPFV--IKAAARP 137
YS ++ + +F ++++ + + EF V IK
Sbjct: 190 CGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLE 249
Query: 138 VQFRVGQAIHGMF-----------------EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+ +G + M+ E ++V N+L+ +A G+L A +F +
Sbjct: 250 IDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNM 309
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
K+DV+SW SMI+G+ + F A++L++EM VKPD+VT+ VLSACA L+ G
Sbjct: 310 PKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGW 369
Query: 241 WVSSHIEKNGIKMDL 255
V +I ++G++ D+
Sbjct: 370 AVHHYIRRHGVQADI 384
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 130/229 (56%), Gaps = 6/229 (2%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T+ QLK+IHAQM+ + D Y+AS+L + CALS L YA ++F+ +PN + WNT
Sbjct: 37 TSMHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRLFNNTQEPNSFMWNT 96
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
LIRA++SS P ++ ++++ + P + T PF++KA + + +H
Sbjct: 97 LIRAHASSLNPSEALLLYVDM-RRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKF 155
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ +L + N L+ Y+V D+ A VF + ++ + W +MISG+ + +A+EL+
Sbjct: 156 GLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEALELF 215
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+M VE ++P+ T+ VLSACA+ L+ G + +E+ GI++ +
Sbjct: 216 DQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVIL 264
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 104/204 (50%), Gaps = 8/204 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H +L + + + L A S + AR++FD++ + +L W T+I Y+
Sbjct: 147 QVHTHVLKFGLDLNLHVVNGLVR--AYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQ 204
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLV 155
+ ++ +F Q++ PN TL V+ A A+ +G+ IH E+ ++
Sbjct: 205 NYCSNEALELFDQMIVEG-LEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVI 263
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ +L+H YA G + MA +F I +++ +WN+MI G G ++A++ + ++E E
Sbjct: 264 LGTALVHMYAKNGAILMAQKLFDTISERNTATWNAMICGLAVHGHAKEALDRFWKLEKEQ 323
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG 239
+ P+++T V VLSAC L G
Sbjct: 324 IVPNDITFVGVLSACCHAGLLSVG 347
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 122/213 (57%), Gaps = 5/213 (2%)
Query: 46 MLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI 105
M+ T F S +KL + YA +F + ++ TWN+++RA+ +S+ P
Sbjct: 1 MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
Query: 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSL 160
++ + +++ S P+ FT P ++K A ++F+VG+ +HG M DL I +L
Sbjct: 61 RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
Query: 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220
++ YA CGDL A +F +G ++ V W SMISG+++ +A+ LY++ME + PDE
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
VTM ++SACA+ +DL G+ + SHI + +K+
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKI 213
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 122/219 (55%), Gaps = 17/219 (7%)
Query: 40 KRIHAQ----MLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
K +H Q ML +D + + + ++ C L+ AR +F+++ N W ++I
Sbjct: 99 KVLHGQVVKYMLHSDLYIET-TLLNMYAACG-----DLKSARFLFERMGHRNKVVWTSMI 152
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDL 154
Y + P ++ +++ ++ + + P+E T+ ++ A A VG +H + E D+
Sbjct: 153 SGYMKNHCPNEALLLYKKMEEDG-FSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDM 211
Query: 155 ----VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
V+ ++L++ YA CGDL A VF + KDV +W+++I G+V+ +A++L+RE
Sbjct: 212 KICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFRE 271
Query: 211 ME-VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+ N++P+EVT++ V+SACA+ DLE G WV +I +
Sbjct: 272 VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITR 310
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 104/199 (52%), Gaps = 13/199 (6%)
Query: 41 RIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++H+ + D S L + C L+ AR++FD++ ++Y W+ LI
Sbjct: 201 KLHSHIREMDMKICAVLGSALVNMYAKCG-----DLKTARQVFDKLSDKDVYAWSALIFG 255
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED----- 152
Y ++ ++ +F ++ S PNE T+ VI A A+ G+ +H
Sbjct: 256 YVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGH 315
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ ++NSLI ++ CGD+ A +F + KD++SWNSM++GF G +A+ +R M+
Sbjct: 316 SVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQ 375
Query: 213 VENVKPDEVTMVVVLSACA 231
+++PDE+T + VL+AC+
Sbjct: 376 TTDLQPDEITFIGVLTACS 394
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 158 NSLIHFYAVCGDLAM--AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVE 214
N LI G L + AY VF + DV++WNSM+ FV +A++ Y EM E
Sbjct: 14 NKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
PD T +L CA + + G + + K + DL E
Sbjct: 74 RNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIE 117
>gi|357517875|ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523248|gb|AET03702.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 510
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 131/231 (56%), Gaps = 8/231 (3%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H ++K+ HAQ++ DP+ A+KL + +++E+ARK+FD + + +++
Sbjct: 28 HHCKTIDRIKQTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFC 87
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-- 148
WN +I+ Y++ ++ ++ + S PN +T PFV+KA G+ IHG
Sbjct: 88 WNNVIKGYANMGPFAEALHVYNAMRL-SGAAPNRYTYPFVLKACGAERDCLKGRIIHGNV 146
Query: 149 ---MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
E DL + N+ + FYA C ++ + VF + ++D+VSWNSM+SG++ G+ ++A+
Sbjct: 147 VKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVDEAV 206
Query: 206 ELYREMEVENVK--PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
L+ +M ++ PD T+V VL A A+K D+ G W+ +I K G+K+D
Sbjct: 207 MLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLD 257
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 107/221 (48%), Gaps = 18/221 (8%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRA 97
IH ++ FD LF A F +E +RK+FD++ + ++ +WN+++
Sbjct: 142 IHGNVVKCGLEFD------LFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSG 195
Query: 98 YSSSDEPIQSFMIFLQLVYNSPY-FPNEFTLPFVIKAAARPVQFRVGQAIH------GMF 150
Y ++ ++ M+F ++ + FP+ TL V+ A A G IH GM
Sbjct: 196 YIANGYVDEAVMLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGM- 254
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ D + LI Y+ CG + MA VF I ++V+ W+++I + GF ++A+ ++R+
Sbjct: 255 KLDPAVGCGLITLYSNCGYIRMAKAVFDQIPDRNVIVWSAIIRCYGMHGFAQEALSMFRQ 314
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ + D + + +LSAC+ E G + +E G+
Sbjct: 315 LVELGLHLDGIVFLSLLSACSHAGMHEEGWHLFQTMETYGV 355
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 144 QAIHGMFEDDLVISNSLIHFYAVCG--DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
Q I G + D I+ LI Y+ G ++ A VF + ++DV WN++I G+ G F
Sbjct: 42 QIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFCWNNVIKGYANMGPF 101
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+A+ +Y M + P+ T VL AC +RD G + ++ K G++ DL
Sbjct: 102 AEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIHGNVVKCGLEFDL 155
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 46 MLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI 105
M+ T DP+++S+L CALS L Y K+ I PN ++WN IR +S S+ P
Sbjct: 1 MVITGLVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPK 60
Query: 106 QSFMIFLQLVYNS--PYFPNEFTLPFVIKAAARPVQFRVGQAIHG---MFEDDLV--ISN 158
+ + + Q++ P+ FT P + K A +G I G +LV + N
Sbjct: 61 DAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHN 120
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
+ IH +A CG++ A VF +D+VSWN +I+G+ + G EKAIE+Y+ ME E VKP
Sbjct: 121 ASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKP 180
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
D+VTM+ ++S+CA DL G +++ NG++M
Sbjct: 181 DDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRM 215
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 112/215 (52%), Gaps = 24/215 (11%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+F C +E ARK+FD+ P +L +WN LI Y E ++ ++ +++ +
Sbjct: 125 MFASCG-----EMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVY-KVMESEGV 178
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYC 175
P++ T+ ++ + A G+ + + + + ++N+L+ ++ CGD+ A
Sbjct: 179 KPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARR 238
Query: 176 VFVMIGK-------------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
+F + K KDVV WN+MI G V+ + A+ L++EM+ N PDE+T
Sbjct: 239 IFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEIT 298
Query: 223 MVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M+ LSAC++ L+ GIW+ +IEK+ + +++
Sbjct: 299 MIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVAL 333
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 14/192 (7%)
Query: 61 LFTPC-----ALSTFSSLE---YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
+F+ C A F +LE K+FD + + ++ WN +I + + +F
Sbjct: 226 MFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALF- 284
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVC 167
Q + S P+E T+ + A ++ VG IH E ++ + SL+ YA C
Sbjct: 285 QEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKC 344
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G+++ A CVF I ++ +++ ++I G G AI + EM + PDE+T + +L
Sbjct: 345 GNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLL 404
Query: 228 SACAKKRDLEFG 239
SAC ++ G
Sbjct: 405 SACCHGGMIQTG 416
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 142/290 (48%), Gaps = 61/290 (21%)
Query: 11 IPRHPNPTTL-----TVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPC 65
I HP T L T+N+ HQ +PH ++ T +P ++++ T C
Sbjct: 25 ISNHPCLTMLQNHCTTINHFHQIYPH--------------IIKTGLTLNPIASTRALTFC 70
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A S ++ YA K+F ++P PNLY+WNT+IRA+S S P + +F+ ++Y S P
Sbjct: 71 A-SPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLY-SQIQPQYL 128
Query: 126 TLPFVIKAAARPVQFRVGQAIHG------------------------------------- 148
T P V KA A+ G +HG
Sbjct: 129 TYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGK 188
Query: 149 ---MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
+++ D+V NS+I YA CG++ + +F + + VSWNSMISG+V G +A+
Sbjct: 189 KLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEAL 248
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EL+ +M+VE + E TMV +L+ACA L+ G WV +I++N ++++
Sbjct: 249 ELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNV 298
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 84/164 (51%), Gaps = 7/164 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ +R +FD + +WN++I Y + + +++ +F ++ + +EFT+ ++
Sbjct: 213 IDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEG-FEVSEFTMVSLLN 271
Query: 133 AAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A + G+ +H FE ++++ ++I Y CG + A VF ++ +
Sbjct: 272 ACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSC 331
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSAC 230
WNS+I G G +A E + ++E +KPD V+ + VL+AC
Sbjct: 332 WNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTAC 375
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 13/221 (5%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IHA + T + + + L A+S F +E K+FDQ P +L +W TLI+AYS
Sbjct: 159 QIHAHSIKTGLSSNLFVKNTLMRFYAVSGF--IEAVEKVFDQGPHWDLISWTTLIQAYSK 216
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-----HGMFE--DD 153
P ++ F ++ + + TL V+ A ++ F +G+ I H +F+ D
Sbjct: 217 MGYPSEAIAAFFRMNCTA----DRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSD 272
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + N+L+ Y CG +A +F ++ K++VSWNSMISG G F++A+ ++R M+
Sbjct: 273 VFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQT 332
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+KPD VT+V VL++CA DLE G WV S+I+KN +K D
Sbjct: 333 MGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKAD 373
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++F +P NL +WN++I + ++ +F ++ P+ TL V+ + A
Sbjct: 292 ARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRM-QTMGLKPDSVTLVGVLNSCA 350
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ +H + D ++N+L+ YA CG + A+ VF + KDV S+ +
Sbjct: 351 NLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTA 410
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
MI GF G ++A+ ++ EM V+PD VT+V VLSAC+ LE G
Sbjct: 411 MIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEG 459
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 10/177 (5%)
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS-FMIFLQLVYNSPYFPNEFTL 127
+ +L YA + + Q +Y +N +I++ S+S+ F ++ Q++ P+ +TL
Sbjct: 83 SIQNLWYASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIG-LSPDTYTL 141
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
P+++KA ++ F IH +L + N+L+ FYAV G + VF
Sbjct: 142 PYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPH 201
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
D++SW ++I + + G+ +AI + M N D +T+VVVLSAC++ D G
Sbjct: 202 WDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADRMTLVVVLSACSQLGDFTLG 255
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 126/227 (55%), Gaps = 10/227 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTP-CALSTF---SSLEYARKMFDQIPQPNLYTWN 92
+ L +IHA ++ F AS+L C LS L +AR++FD+IP+P+ + +N
Sbjct: 24 QHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFMYN 83
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
TL+RAYS+SD P ++ + + V PNEFTLPFV+KA A HG+
Sbjct: 84 TLVRAYSNSDCPQEALRLH-RGVLQRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVK 142
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F + ++N+L+HF+A G L + F + ++VVSWN+MI G+ + G +A L
Sbjct: 143 LGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACAL 202
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ EM + + D T+V +L AC+ + +LE G V H+ +G ++D
Sbjct: 203 FGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVD 249
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 23/236 (9%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFF---DPYSASKLFTP-------------CALS 68
G H H L + ++ RI L D + D + A + F CA +
Sbjct: 234 GRLVHCHMLVSGSRVDRILGNAL-LDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQA 292
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
S++ R F+Q+P+ N+ +WN +I Y ++ ++ ++ + P+EFTL
Sbjct: 293 KHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRM-RSLGITPDEFTLA 351
Query: 129 FVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V+ A + G+ IH D+ + + NSL+ YA CG + A +F + K
Sbjct: 352 GVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNK 411
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+V+SWN +I G ++ + +R M + PDE+T V +LSAC+ LE G
Sbjct: 412 NVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAG 467
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 37/218 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
++ SL +R+ F ++ N+ +WNT+I Y+ + E ++ +F ++ + + FTL
Sbjct: 160 ASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQG-LLADVFTL 218
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVM--- 179
++ A + VG+ +H D ++ N+L+ Y CGDL MA+ F M
Sbjct: 219 VSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPI 278
Query: 180 ----------------------------IGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ ++++VSWN+MIS +V+ G + ++LY M
Sbjct: 279 KNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRM 338
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+ PDE T+ VLSAC + DL G + ++ N
Sbjct: 339 RSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDN 376
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 89/222 (40%), Gaps = 42/222 (18%)
Query: 40 KRIHAQMLSTDFFFDP-----YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
K IH + D F DP S ++ C ++ A +F ++P N+ +WN +
Sbjct: 367 KMIHCYV--RDNFNDPGVTLLNSLLDMYARCG-----QVDTAIGLFTEMPNKNVISWNVI 419
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL 154
I A + Q + F + + + + P+E T ++ A + G+ E
Sbjct: 420 IGALAMHGRA-QETVTFFRTMVSDAFSPDEITFVGLLSACSHG----------GLLEAGE 468
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ Y V ++ C+ ++G++ G KA+ L ++M
Sbjct: 469 YYFEAMARVYNVEPEVEHYGCMVDLLGRR---------------GHLAKAVNLIKDM--- 510
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG-IWVSSHIEKNGIKMDL 255
++KPD V +L AC ++E G + + +E GI L
Sbjct: 511 SIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGL 552
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 137/260 (52%), Gaps = 28/260 (10%)
Query: 9 ISIPRHP---------NPTTLTVNNGHQR---HPHFLTNQKQLKRIHAQMLSTDFFFDPY 56
IS+ HP +P+ T N H+R ++ QLK++HA L T + P
Sbjct: 3 ISLLLHPLSPHIQPANSPSASTAGNHHRRILSLAETCSDMSQLKQLHAFTLRTTY---PD 59
Query: 57 SASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS-DEPIQSFMIF 111
+ LF + S+FS + YA ++FD I + + WNTLIRA + ++FM++
Sbjct: 60 EPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLY 119
Query: 112 LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAV 166
+++ P++ T PFV+KA A G+ +H F D+ ++N LIHFY
Sbjct: 120 RKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGS 179
Query: 167 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
CG L +A VF + ++ +VSWNSMI V G ++ A++L+R+M+ ++ +PD TM V
Sbjct: 180 CGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQ-KSFEPDGYTMQSV 238
Query: 227 LSACAKKRDLEFGIWVSSHI 246
LSACA L G W SH+
Sbjct: 239 LSACAGLGSLSLGTW--SHV 256
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++H Q++ F D Y + L + C L+ ARK+FD++P+ +L +WN++I
Sbjct: 152 KQVHCQIVKHGFSGDVYVNNGLIHFYGSCGC-----LDLARKVFDEMPERSLVSWNSMID 206
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------ 150
A E + +F + + P+ +T+ V+ A A +G H
Sbjct: 207 ALVRVGEYDSALQLFRDM--QKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDV 264
Query: 151 --EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
D++I NSLI Y CG L MA VF + K D+ SWN+MI GF G E+A+ +
Sbjct: 265 DVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCF 324
Query: 209 REM--EVENVKPDEVTMVVVLSACAKK 233
M E +NVKP+ VT V +L AC +
Sbjct: 325 DCMVKEGKNVKPNSVTFVALLIACNHR 351
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 134/268 (50%), Gaps = 29/268 (10%)
Query: 2 ETLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL 61
E L ++S+ R P L + + H L R+ L+ F SKL
Sbjct: 64 EALEAHIVSLVRRC-PGLLALRSAHA----------HLTRLRLPRLTAAFAL-----SKL 107
Query: 62 FTPCALSTFSSLEYA------RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
C + + A R +FDQIP P + +N+LIRA ++ + ++ +++
Sbjct: 108 LASCVSAPAPAAAQAAASSYARNLFDQIPDPTAFCYNSLIRALPAAGSA-PALAVYRRML 166
Query: 116 YNSPYFPNEFTLPFVIKAAAR---PVQFRV--GQAIHGMFEDDLVISNSLIHFYAVCGDL 170
PN FTL F +KA A P + R QA+ + L++ YA C +
Sbjct: 167 RAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQV 226
Query: 171 AMAYCVF-VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
A+A VF M G K++V+W++M+SG+ G +A+ L+REM+ V+PDEVTMV V+SA
Sbjct: 227 ALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISA 286
Query: 230 CAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
CAK L+ G WV ++I++ GI +DL
Sbjct: 287 CAKAGALDLGKWVHAYIDRKGITVDLEL 314
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 9/219 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP-QPNLYTWNTLIRAY 98
+++HAQ L Y + L + + AR +FD + NL W+ ++ Y
Sbjct: 195 RQLHAQALRQGLATSAYVQTGLLN--LYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGY 252
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----D 153
S ++ +F ++ P+E T+ VI A A+ +G+ +H + D
Sbjct: 253 SRVGMVNEALGLFREM-QAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVD 311
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L +S +LI YA CG + A VF + +KD +W++MI GF G E A+ L+ M
Sbjct: 312 LELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLE 371
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
V+P+ VT + VLSACA +E G S ++ GIK
Sbjct: 372 LKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIK 410
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 137/246 (55%), Gaps = 9/246 (3%)
Query: 20 LTVNNGHQRHPHFLTNQKQL---KRIHAQMLSTDFFFDPYSASKLFT-PCALSTFSSLEY 75
LT +Q T++K + K+IHA ++ PYS L + A + F +
Sbjct: 15 LTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPH 74
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD++ P+L++WN +IR Y++S + +F+Q++ + +P+ +T PFVIKA
Sbjct: 75 ARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG 134
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ +G IH F+ D + NSL+ Y CG++ +A VF ++ ++ +VSWN+
Sbjct: 135 DYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNT 194
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI+G+ + G ++A+ ++ M + ++PD T+V VL C+ ++LE G V + +E
Sbjct: 195 MINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKN 254
Query: 251 IKMDLT 256
+ D++
Sbjct: 255 LGEDIS 260
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 111/206 (53%), Gaps = 14/206 (6%)
Query: 42 IHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
IHA+ + + F D + S ++ C +E AR++FD + + L +WNT+I Y
Sbjct: 145 IHARTVMSGFDSDAFVQNSLMAMYMNCG-----EMEVARRVFDLMRERTLVSWNTMINGY 199
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DD 153
+ ++ M+F ++ P+ T+ V+ + + VG+ +H + E +D
Sbjct: 200 FKNGCVKEALMVFDWMI-GKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGED 258
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + NSL+ YA CG++ A +F + K+DVVSW +M++G++ G A+ L + M+
Sbjct: 259 ISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQF 318
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFG 239
E+VKP+ VT+ VLSACA L+ G
Sbjct: 319 ESVKPNFVTLASVLSACASLYSLKHG 344
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+++ A+ +F ++ + ++ +W T++ Y + + +S ++ Q++ PN TL V
Sbjct: 273 GNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDA-RSALLLCQMMQFESVKPNFVTLASV 331
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A + G+ +HG E ++++ +LI YA C ++ +++ VF K+
Sbjct: 332 LSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRT 391
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
WN++ISG + G KAIEL+++M +E V P++ T+ +L A A DL+
Sbjct: 392 APWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQ 443
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 8/170 (4%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
++F + + WN +I + ++ +F Q++ + PN+ TL ++ A A
Sbjct: 381 RVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEA-VDPNDATLNSLLPAYAFL 439
Query: 138 VQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD--VVSWNS 190
+ + +HG F + ++ LI Y+ CG L A+ +F I KKD +++W++
Sbjct: 440 TDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSA 499
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+I+G+ G E AI L+ +M VKP+E+T +L AC+ ++ G+
Sbjct: 500 IIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGL 549
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 134/268 (50%), Gaps = 29/268 (10%)
Query: 2 ETLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL 61
E L ++S+ R P L + + H L R+ L+ F SKL
Sbjct: 15 EALEAHIVSLVRR-CPGLLALRSAHA----------HLTRLRLPRLTAAFAL-----SKL 58
Query: 62 FTPCALSTFSSLEYA------RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
C + + A R +FDQIP P + +N+LIRA ++ + ++ +++
Sbjct: 59 LASCVSAPAPAAAQAAASSYARNLFDQIPDPTAFCYNSLIRALPAAGSA-PALAVYRRML 117
Query: 116 YNSPYFPNEFTLPFVIKAAAR---PVQFRV--GQAIHGMFEDDLVISNSLIHFYAVCGDL 170
PN FTL F +KA A P + R QA+ + L++ YA C +
Sbjct: 118 RAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQV 177
Query: 171 AMAYCVF-VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
A+A VF M G K++V+W++M+SG+ G +A+ L+REM+ V+PDEVTMV V+SA
Sbjct: 178 ALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISA 237
Query: 230 CAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
CAK L+ G WV ++I++ GI +DL
Sbjct: 238 CAKAGALDLGKWVHAYIDRKGITVDLEL 265
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 9/219 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP-QPNLYTWNTLIRAY 98
+++HAQ L Y + L A + AR +FD + NL W+ ++ Y
Sbjct: 146 RQLHAQALRQGLATSAYVQTGLLNLYA--KCEQVALARTVFDGMAGDKNLVAWSAMVSGY 203
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----D 153
S ++ +F ++ P+E T+ VI A A+ +G+ +H + D
Sbjct: 204 SRVGMVNEALGLFREM-QAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVD 262
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L +S +LI YA CG + A VF + +KD +W++MI GF G E A+ L+ M
Sbjct: 263 LELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLE 322
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
V+P+ VT + VLSACA +E G S ++ GIK
Sbjct: 323 LKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIK 361
>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 117/206 (56%), Gaps = 11/206 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS-SLEYARKMFDQIPQPNLYTWNTLIR 96
+L ++H M+ + + S+L C + +L YAR +F+ I P++Y WN++IR
Sbjct: 20 ELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIR 79
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA--RPVQFRVGQAIHGM----- 149
YS+S P ++ +IF Q + Y P+ FT P+V+KA + R +QF G +HG
Sbjct: 80 GYSNSPNPDKA-LIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQF--GSCVHGFVVKTG 136
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
FE ++ +S L+H Y CG++ VF I K +VV+W S+ISGFV F AIE +R
Sbjct: 137 FEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFR 196
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRD 235
EM+ VKP+E MV +L AC + D
Sbjct: 197 EMQSIGVKPNETIMVDLLVACGRCFD 222
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 15/201 (7%)
Query: 53 FDPYSASKLFTPCALST--------FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEP 104
FDPY SK L+T + AR +FD +P+ NL +WN++I YS + +
Sbjct: 221 FDPYCQSKFEFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDA 280
Query: 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNS 159
++ +F ++ + P++ T VI+A+ ++GQ IH F D I +
Sbjct: 281 EEAMCMFSDML-DLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCA 339
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE-NVKP 218
L++ YA G+ A +F + KKD ++W +I G G KA+ +++ M+ E N P
Sbjct: 340 LVNMYAKTGNAESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATP 399
Query: 219 DEVTMVVVLSACAKKRDLEFG 239
D +T + VL AC+ +E G
Sbjct: 400 DGITYLGVLYACSHIGLVEEG 420
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 108/216 (50%), Gaps = 13/216 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTF---SSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+H ++ T F + Y ++ C L + + + ++F+ IP+ N+ W +LI +
Sbjct: 128 VHGFVVKTGFEVNMYVST-----CLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGF 182
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISN 158
+++ + F ++ + PNE + ++ A R FE +++++
Sbjct: 183 VNNNRFSDAIEAFREM-QSIGVKPNETIMVDLLVACGRCFD----PYCQSKFEFNVILAT 237
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
SLI YA CGD+ A +F + ++++VSWNS+I+G+ + G E+A+ ++ +M + P
Sbjct: 238 SLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAP 297
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
D+VT V+ A + + G + +++ K G D
Sbjct: 298 DKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKD 333
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 146 IHGMFEDDLVISN-----SLIHFYAVCGD---LAMAYCVFVMIGKKDVVSWNSMISGFVE 197
+HG+ VI N LI F C + L+ A VF I V WNSMI G+
Sbjct: 24 LHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSN 83
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+KA+ Y+EM + PD T VL AC+ RD++FG V + K G ++++
Sbjct: 84 SPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNM 141
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 121/213 (56%), Gaps = 5/213 (2%)
Query: 46 MLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI 105
M+ T F S +KL + YA +F ++ TWN+++RA+ +S+ P
Sbjct: 1 MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPR 60
Query: 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSL 160
++ + +++ S P+ FT P ++K A ++F+VG+ +HG M DL I +L
Sbjct: 61 RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
Query: 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220
++ YA CGDL A +F +G ++ V W SMISG+++ +A+ LY++ME + PDE
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
VTM ++SACA+ +DL G+ + SHI + +K+
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKI 213
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 122/219 (55%), Gaps = 17/219 (7%)
Query: 40 KRIHAQ----MLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
K +H Q ML +D + + + ++ C L+ AR +F+++ N W ++I
Sbjct: 99 KVLHGQVVKYMLHSDLYIET-TLLNMYAACG-----DLKSARFLFERMGHRNKVVWTSMI 152
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDL 154
Y + P ++ +++ ++ + + P+E T+ ++ A A VG +H + E D+
Sbjct: 153 SGYMKNHCPNEALLLYKKMEEDG-FSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDM 211
Query: 155 ----VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
V+ ++L++ YA CGDL A VF + KDV +W+++I G+V+ +A++L+RE
Sbjct: 212 KICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFRE 271
Query: 211 ME-VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+ N++P+EVT++ V+SACA+ DLE G WV +I +
Sbjct: 272 VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITR 310
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 13/199 (6%)
Query: 41 RIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++H+ + D S L + C L+ AR++FDQ+ ++Y W+ LI
Sbjct: 201 KLHSHIREMDMKICAVLGSALVNMYAKCG-----DLKTARQVFDQLSDKDVYAWSALIFG 255
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----D 152
Y ++ ++ +F ++ S PNE T+ VI A A+ G+ +H
Sbjct: 256 YVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGH 315
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ ++NSLI ++ CGD+ A +F + KD++SWNSM++G G +A+ + M+
Sbjct: 316 SVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQ 375
Query: 213 VENVKPDEVTMVVVLSACA 231
+++PDE+T + VL+AC+
Sbjct: 376 TTDLQPDEITFIGVLTACS 394
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 158 NSLIHFYAVCGDLAM--AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVE 214
N LI G L + AY VF DV++WNSM+ FV +A++ Y EM E
Sbjct: 14 NKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
PD T +L CA + + G + + K + DL E
Sbjct: 74 RNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIE 117
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 37/257 (14%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+LKRIHA + + D SKL ALS L+Y+ K+ +P P + WNTLIRA
Sbjct: 28 ELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRA 87
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFED 152
+S++ P S +F++++ N P+ T PF++KA ++ + +G A+H E
Sbjct: 88 FSNTKNPNPSITVFIKMLQNG-VSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEI 146
Query: 153 DLVISNSLIHFYAV-------------------------------CGDLAMAYCVFVMIG 181
D I NSLIH YA CGDL MA VF ++
Sbjct: 147 DKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMP 206
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+KDVVSW+S+I G+V+G + +A+ L+ M + +EVT+V L ACA LE G
Sbjct: 207 EKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRM 266
Query: 242 VSSHIEKNGIKMDLTFE 258
+ +I +N + + + +
Sbjct: 267 MHRYIVENELPLTIVLQ 283
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 8/188 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L AR++F+ +P+ ++ +W++LI Y ++ +F ++ ++ P NE TL
Sbjct: 193 GDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGP-MANEVTLVSA 251
Query: 131 IKAAARPVQFRVGQAIHG-MFEDDL----VISNSLIHFYAVCGDLAMAYCVF--VMIGKK 183
+ A A G+ +H + E++L V+ SL+ YA CG + A VF + +
Sbjct: 252 LCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEA 311
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
DV+ WN++I G G ++A+ L+ EM++ + PDE+T + +LS CA +E +
Sbjct: 312 DVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFF 371
Query: 244 SHIEKNGI 251
+ K+G+
Sbjct: 372 DCLRKHGM 379
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 37/257 (14%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+LKRIHA + + D SKL ALS L+Y+ K+ +P P + WNTLIRA
Sbjct: 28 ELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRA 87
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFED 152
+S++ P S +F++++ N P+ T PF++KA ++ + +G A+H E
Sbjct: 88 FSNTKNPNPSITVFIKMLQNG-VSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEI 146
Query: 153 DLVISNSLIHFYAV-------------------------------CGDLAMAYCVFVMIG 181
D I NSLIH YA CGDL MA VF ++
Sbjct: 147 DKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMP 206
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+KDVVSW+S+I G+V+G + +A+ L+ M + +EVT+V L ACA LE G
Sbjct: 207 EKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRM 266
Query: 242 VSSHIEKNGIKMDLTFE 258
+ +I +N + + + +
Sbjct: 267 MHRYIVENELPLTIVLQ 283
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 8/188 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L AR++F+ +P+ ++ +W++LI Y ++ +F ++ ++ P NE TL
Sbjct: 193 GDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGP-MANEVTLVSA 251
Query: 131 IKAAARPVQFRVGQAIHG-MFEDDL----VISNSLIHFYAVCGDLAMAYCVF--VMIGKK 183
+ A A G+ +H + E++L V+ SL+ YA CG + A VF + +
Sbjct: 252 LCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEA 311
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
DV+ WN++I G G ++A+ L+ EM++ + PDE+T + +LS CA +E +
Sbjct: 312 DVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFF 371
Query: 244 SHIEKNGI 251
+ K+G+
Sbjct: 372 DCLRKHGM 379
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 125/249 (50%), Gaps = 41/249 (16%)
Query: 46 MLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI 105
ML T F DP+SASK+ CAL SL YAR +F+QIP P +T N++IR Y++ + P
Sbjct: 1 MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60
Query: 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSL 160
Q+ ++F QL+ P+ FT P + K+ + G+ +H F D I N+L
Sbjct: 61 QA-ILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTL 116
Query: 161 IHFYAVCGDLAMAYCVFVMIGKKDVVS--------------------------------W 188
++ Y+ CG L A VF + K VVS W
Sbjct: 117 MNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCW 176
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
N MI+G VE +E+A+ L+ EM++ VK D+VTM +L AC LE G W+ +IEK
Sbjct: 177 NIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEK 236
Query: 249 NGIKMDLTF 257
I++D+
Sbjct: 237 EKIEVDVAL 245
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 112/250 (44%), Gaps = 39/250 (15%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H F D Y + L S L ARK+FD++ ++ +W T+I AY+
Sbjct: 95 KQLHCHSTKLGFASDAYIQNTLMN--MYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 152
Query: 100 SSDEPIQSFMIFLQLVYNSPYF-------------------------------PNEFTLP 128
D P ++ +F ++ S F ++ T+
Sbjct: 153 QWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMA 212
Query: 129 FVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
++ A +G+ +H E D+ + +L+ YA CG + A VF + +K
Sbjct: 213 SLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEK 272
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI-WV 242
DV++W ++I G G KA+EL+ EM++ VKPD +T V VL+AC+ + GI +
Sbjct: 273 DVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYF 332
Query: 243 SSHIEKNGIK 252
+S K GI+
Sbjct: 333 NSMPNKYGIQ 342
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+E A ++F ++P+ ++ TW LI + + +++ +F ++ S P+ T V
Sbjct: 257 GSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQM-SEVKPDAITFVGV 315
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + G+ + + NS+ + Y + + C+ M+G+
Sbjct: 316 LAACSHA----------GLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGR-------- 357
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
G +A +L + M + PD +V +LSAC
Sbjct: 358 -------AGRIAEAEDLIQNMP---MAPDYFVLVGLLSAC 387
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 115/222 (51%), Gaps = 37/222 (16%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F L YA +F+ I +PN WNT+IR ++ S +P+ S +++ +V + PN +T PF
Sbjct: 11 FDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMV-SLGLLPNSYTFPF 69
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHF--------------------- 163
++K+ A+ F GQ IHG F+ DL + SLI
Sbjct: 70 LLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRD 129
Query: 164 ----------YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
YA GD+ A +F I KDVVSWN+MISG+ E G +++A+EL+ EM
Sbjct: 130 VVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMK 189
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
NV+PDE T V VLSACA +E G V S ++ +G +L
Sbjct: 190 MNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNL 231
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 109/200 (54%), Gaps = 8/200 (4%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D S + L T ++ + A+K+FD+IP ++ +WN +I Y+ + ++ +F +
Sbjct: 129 DVVSYTALIT--GYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEE 186
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCG 168
++ P+E T V+ A A +G+ +H +D +L I N+LI Y+ CG
Sbjct: 187 MM-KMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCG 245
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
++ A +F + KDV+SWN++I G+ +++A+ L++EM P++VTM+ VL
Sbjct: 246 EVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLP 305
Query: 229 ACAKKRDLEFGIWVSSHIEK 248
ACA ++ G W+ +I+K
Sbjct: 306 ACAHLGAIDIGRWIHVYIDK 325
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C +E A +F + ++ +WNTLI Y+ + ++ ++F +++ S
Sbjct: 240 LYSKCG-----EVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML-RSGE 293
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMA 173
PN+ T+ V+ A A +G+ IH + L + SLI YA CGD+ A
Sbjct: 294 TPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 353
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+ VF + K + SWN+MI GF G + + +L+ M ++PD++T V +LSAC+
Sbjct: 354 HQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHS 413
Query: 234 RDLEFG 239
L+ G
Sbjct: 414 GMLDLG 419
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 132/257 (51%), Gaps = 37/257 (14%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+LK++HA +S + K+ + ALS ++Y+ ++F QI P +++WN +IR
Sbjct: 29 ELKKLHAIGISYGLSHEYSFIFKILSFSALSNSGDIDYSYRVFSQISSPTIFSWNIIIRG 88
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----ED 152
YS+S PI S IFL+++ + P+ T PF++KA+AR + + G ++H E
Sbjct: 89 YSNSKNPIHSLSIFLKMLRHG-VAPDYLTYPFLVKASARLSKQKSGVSVHAQIIKTGHES 147
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM--------------------- 191
D I NSLIH YA CG++ A+ VF + K++VSWNSM
Sbjct: 148 DRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQ 207
Query: 192 ----------ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
I G+V+ G + +A+ ++ +M K +EVTMV VLSACA L+ G
Sbjct: 208 ERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKGRM 267
Query: 242 VSSHIEKNGIKMDLTFE 258
+ +I N + M + +
Sbjct: 268 MHQYIIDNLLPMTMVLQ 284
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 37/235 (15%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPC-----ALSTFSSLE---------- 74
L+ QK +HAQ++ T D + + L + C A F S++
Sbjct: 127 LSKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSM 186
Query: 75 -----------YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
A+K+F+ + + ++ +W++ I Y + E ++ +F ++ P N
Sbjct: 187 LDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPK-AN 245
Query: 124 EFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-----VISNSLIHFYAVCGDLAMAYCVFV 178
E T+ V+ A A + G+ +H D+L V+ SL+ YA CG + A VF
Sbjct: 246 EVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFR 305
Query: 179 MIGKK--DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
I K DV WN+MI G G E++++L++EM++ ++ DE+T + +L+ACA
Sbjct: 306 GISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEITYLCLLAACA 360
>gi|218189272|gb|EEC71699.1| hypothetical protein OsI_04200 [Oryza sativa Indica Group]
Length = 338
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 8/189 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L +A K+FDQI P + WN LIR + SD P + + F + P+ T PF++K
Sbjct: 15 LVFAHKVFDQIKAPTTFLWNILIRGLAQSDAPADA-IAFYKKAQGGGMVPDNLTFPFILK 73
Query: 133 AAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A AR G+ +H G+ D + +SNSLIH YA CG+L A VF + KDVV
Sbjct: 74 ACARINALNEGEQMHNHITKLGLLSD-IFVSNSLIHLYAACGNLCYARSVFDEMVVKDVV 132
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
SWNS+I G+ + F+ + L++ M+ E VK D+VTM+ V+SAC + D ++ +I
Sbjct: 133 SWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYI 192
Query: 247 EKNGIKMDL 255
E I++D+
Sbjct: 193 EDYCIEVDV 201
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 53/259 (20%)
Query: 21 TVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF 80
+N G Q H H I L +D F S L+ C +L YAR +F
Sbjct: 80 ALNEGEQMHNH----------ITKLGLLSDIFVSN-SLIHLYAACG-----NLCYARSVF 123
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
D++ ++ +WN+LI YS + + + +L+ N ++ T+ V+ A R +
Sbjct: 124 DEMVVKDVVSWNSLICGYSQCNR-FKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDY 182
Query: 141 RVGQAIHGMFED------------------------------------DLVISNSLIHFY 164
+ + ED ++V N++I Y
Sbjct: 183 SMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAY 242
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
A D+ A +F I KKD++SW+SMISG+ + F A+E++R+M+ VKPD + +
Sbjct: 243 AKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIA 302
Query: 225 VVLSACAKKRDLEFGIWVS 243
V+S+CA L+ G+ V+
Sbjct: 303 SVVSSCAHLGALDLGLVVN 321
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
DL A+ VF I WN +I G + AI Y++ + + PD +T +L
Sbjct: 14 DLVFAHKVFDQIKAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 73
Query: 229 ACAKKRDLEFGIWVSSHIEKNGIKMDL 255
ACA+ L G + +HI K G+ D+
Sbjct: 74 ACARINALNEGEQMHNHITKLGLLSDI 100
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 131/223 (58%), Gaps = 8/223 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWN 92
T+ ++LK+I A + T +P +KL C + T +S+++A +MFD+IPQP++ +N
Sbjct: 46 TSLRELKQIQAYTIKT-HQNNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFN 104
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
T+ R Y+ D+P+++ ++ Q V S P+++T ++KA AR G+ +H +
Sbjct: 105 TMARGYARFDDPLRAILLCSQ-VLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVK 163
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
D++ + +LI+ Y C D+ A VF IG+ VV++N++I+ +A+ L
Sbjct: 164 LGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALAL 223
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+RE++ +KP +VTM+V LS+CA L+ G W+ +++KNG
Sbjct: 224 FRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNG 266
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 107/212 (50%), Gaps = 11/212 (5%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L KQL + ++ D + + ++T C + ++ AR++FD+I +P + +N
Sbjct: 151 LEEGKQLHCLAVKLGVGDNMYVCPTLINMYTAC-----NDVDAARRVFDKIGEPCVVAYN 205
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----- 147
+I + + + P ++ +F +L S P + T+ + + A +G+ IH
Sbjct: 206 AIITSCARNSRPNEALALFREL-QESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKK 264
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F+ + ++ +LI YA CG L A VF + ++D +W++MI + G +AI +
Sbjct: 265 NGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISM 324
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
REM+ V+PDE+T + +L AC+ +E G
Sbjct: 325 LREMKKAKVQPDEITFLGILYACSHTGLVEEG 356
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 125/235 (53%), Gaps = 17/235 (7%)
Query: 21 TVNNGHQR---HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSL 73
T N HQR ++ QLK++HA L T + P + LF + S+FS +
Sbjct: 100 TAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTY---PEEPATLFLYGKILQLSSSFSDV 156
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSS-DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
YA ++FD I + + WNTLIRA + ++FM++ +++ P++ T PFV+K
Sbjct: 157 NYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLK 216
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A F G+ +H F D+ ++N LIH Y CG L +A VF + ++ +VS
Sbjct: 217 ACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVS 276
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
WNSMI V G ++ A++L+REM+ + +PD TM VLSACA L G W
Sbjct: 277 WNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWA 330
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 14/204 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H Q++ F D Y + L + L+ ARK+FD++P+ +L +WN++I A
Sbjct: 228 KQVHCQIVKHGFGGDVYVNNGLIH--LYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 285
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--------E 151
E + +F ++ + P+ +T+ V+ A A +G H
Sbjct: 286 RFGEYDSALQLFREM--QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 343
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+++ NSLI Y CG L MA VF + K+D+ SWN+MI GF G E+A+ + M
Sbjct: 344 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 403
Query: 212 --EVENVKPDEVTMVVVLSACAKK 233
+ ENV+P+ VT V +L AC +
Sbjct: 404 VDKRENVRPNSVTFVGLLIACNHR 427
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 113/194 (58%), Gaps = 14/194 (7%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRA-----YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
YAR +FDQIP+P + +N+LIRA SS+ +F+++ ++++ PN FTL F
Sbjct: 76 YARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAF 135
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF-VMIGKK 183
V+KA GQ +H E + L++ YA C ++A+A VF M+ K
Sbjct: 136 VLKAC---TALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDK 192
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
++V+W+SMI G+ G +A+ L+R+M+ V PDEVTMV V+SACAK L+ G WV
Sbjct: 193 NLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVH 252
Query: 244 SHIEKNGIKMDLTF 257
+ I++ GI +DL
Sbjct: 253 AFIDRKGITVDLEL 266
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 18/231 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFD-QIPQPNLYTWNTLIRAY 98
+++HAQ PY + L A +L AR +FD + NL W+++I Y
Sbjct: 147 QQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVAL--ARNVFDGMVEDKNLVAWSSMIGGY 204
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----D 153
S ++ +F + P+E T+ VI A A+ +G+ +H + D
Sbjct: 205 SRMGMVNEALGLFRDM-QAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVD 263
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L +S +LI YA CG + A VF + ++D +W++MI G G E A+ L+ M
Sbjct: 264 LELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQ 323
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFG---------IWVSSHIEKNGIKMDL 255
V+P+ VT V VLSACA ++ G + + + +E G +DL
Sbjct: 324 LKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQELGIEASMENYGCMVDL 374
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 136/256 (53%), Gaps = 22/256 (8%)
Query: 8 VISIPRHPN--PTTLTVNNGHQRHPHFL------TNQKQLKRIHAQMLSTDFFFDPYSAS 59
+++IP + P + N FL T+ +LK+IHAQ + F +++S
Sbjct: 2 LLAIPTNSQSLPIEIKGENSKTHQSRFLHLLTDCTDLSKLKQIHAQAIRN---FSTHNSS 58
Query: 60 KLFTPCALSTFSSL---EYARKMFDQIPQPNLYTWNTLIRAYSSS-DEPIQSFMIFLQLV 115
LF + SSL +YA ++F+QI PN + WNTLI A + S D Q+ IF +++
Sbjct: 59 -LFLYSRILHVSSLIDFDYACRVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRML 117
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDL 170
P++ T PF++KA A G+ H + D+ + NSLIH YA CG L
Sbjct: 118 EEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCL 177
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+MA VF + + +VSWN MI +V+ G FE A++L+ EM+ + +PD TM ++SAC
Sbjct: 178 SMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQ-NSFEPDGYTMQSIVSAC 236
Query: 231 AKKRDLEFGIWVSSHI 246
A L G+W +++
Sbjct: 237 AGIGALSLGMWAHAYV 252
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 13/200 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++ HAQ+ D Y + L A + L A K+F+++P +L +WN +I AY
Sbjct: 146 RQAHAQIFKLGLDLDVYVGNSLIHLYA--SCGCLSMALKVFEKMPLRSLVSWNVMIDAYV 203
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH--------GMFE 151
S + +F+++ + + P+ +T+ ++ A A +G H G
Sbjct: 204 QSGLFENALKLFVEM--QNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMA 261
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY-RE 210
D++I++SL+ Y+ CG L MA VF + K D+ SWNSMI G + A++ + R
Sbjct: 262 GDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRL 321
Query: 211 MEVENVKPDEVTMVVVLSAC 230
+E+E P+ VT V VLSAC
Sbjct: 322 VEMEKFLPNSVTFVGVLSAC 341
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S SL A+++F+ +P+ +L +WN++I A + + F +LV + PN T
Sbjct: 275 SKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTF 334
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
V+ A G+ M +D I L H+
Sbjct: 335 VGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHY------------------------ 370
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
++ GF ++A+EL M ++KPD V +L AC K+
Sbjct: 371 -GCLVDLLSRSGFIDEALELVANM---HIKPDAVIWRSLLDACYKQ 412
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 136/251 (54%), Gaps = 6/251 (2%)
Query: 12 PRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS 71
P+ +PT + + N + +QLK+I A+M T + S++ CAL+
Sbjct: 146 PKWNSPTNVIITNPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSG 205
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
L YA +F+++ QPN + WNT+IR Y ++ +PI +F F+ + + + + F +
Sbjct: 206 DLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYM-FQLRVEMDSRSFVFAL 264
Query: 132 KAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
KA + G++++ + F+ +L++ N LIHFYA G L A VF KDVV
Sbjct: 265 KACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVV 324
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+W +MI G+ E+A+E++ M + +V+P+EVT++ V+SAC+ +LE G V +
Sbjct: 325 TWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKV 384
Query: 247 EKNGIKMDLTF 257
E+ ++ L+
Sbjct: 385 EEKNMRCSLSL 395
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D YS + + + LE AR+ FDQ P+ N W+ +I YS +++P +S +F +
Sbjct: 423 DVYSWTSMVN--GYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHE 480
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI------SNSLIHFYAVC 167
++ P E TL V+ A + +G IH F +I N+++ YA C
Sbjct: 481 MM-ERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKC 539
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G + A VF + +++++SWN+MI+G+ G ++AI ++ +M +P+ +T V +L
Sbjct: 540 GSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLL 599
Query: 228 SACA 231
+AC+
Sbjct: 600 TACS 603
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 37/206 (17%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ AR++FD+ ++ TW T+I Y++ D ++ +F +L+ S PNE TL V+
Sbjct: 308 LKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVF-ELMLLSHVEPNEVTLIAVVS 366
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + +G+ +H E+ L + N+L+ Y C L A +F + KDV S
Sbjct: 367 ACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYS 426
Query: 188 WNSMISGFVEGGFFEKA-------------------------------IELYREMEVENV 216
W SM++G+ + G E A ++L+ EM V
Sbjct: 427 WTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGV 486
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWV 242
P E T+V VLSAC + L G W+
Sbjct: 487 VPIEHTLVSVLSACGQLTCLNLGDWI 512
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 80/184 (43%), Gaps = 33/184 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S++ A ++F +P+ NL +WNT+I Y+++ Q+ +F Q+ N + PN T +
Sbjct: 540 GSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQM-RNMGFEPNNITFVSL 598
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + G+ + +++ Y + + C+ ++G+
Sbjct: 599 LTACSHG----------GLISEGREYFDNMERKYGIKPERGHYACMVDLLGRT------- 641
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
G E+A +L M ++ P E +L+AC ++E +S+H N
Sbjct: 642 --------GLLEEAYKLIANMPMQ---PCEAAWGALLNACRMHGNVELAR-LSAH---NL 686
Query: 251 IKMD 254
+++D
Sbjct: 687 LRLD 690
>gi|255563405|ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538055|gb|EEF39667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 135/269 (50%), Gaps = 27/269 (10%)
Query: 7 PVISIPRHPNPTTLTVNNGH---QRHPHFL--------TNQKQLKRIHAQMLSTDFFFDP 55
P S+PRH + N GH + P N+ L +IHAQ+ + ++
Sbjct: 22 PYSSLPRHLHSC---FNTGHLCFRFDPCTFFASLIDNSVNRSHLNQIHAQLFVSRLQYNG 78
Query: 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
+ +KL CA T + YAR +FD P P+++ WN +IR Y+ + + ++ ++
Sbjct: 79 FLITKLVNCCA--TLGEIRYARNVFDYYPDPDVFLWNAIIRCYTRQNLFCNAIEMYARMQ 136
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQF-RVGQAIHGM-----FEDDLVISNSLIHFYAVCGD 169
+ P+ FT P V+KA + F +G+ +HG E D+ + N L+ FYA C
Sbjct: 137 I-ACIRPDGFTFPLVLKACTASLAFLDIGRRVHGQAFRHGLEADVFVQNGLVTFYAKCRK 195
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
+++A VF + + +VSW S+ISG+ + G +A+ ++ +M NVKPD++ +V VL A
Sbjct: 196 ISLANIVFGRLSDRSIVSWTSIISGYAQNGQPIEALRIFNQMREVNVKPDQIALVSVLRA 255
Query: 230 CAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
DLE G I IKM L FE
Sbjct: 256 YTDVEDLEHG----KSIHGCVIKMGLEFE 280
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 12/222 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+R+H Q D + + L T A SL A +F ++ ++ +W ++I Y+
Sbjct: 165 RRVHGQAFRHGLEADVFVQNGLVTFYAKCRKISL--ANIVFGRLSDRSIVSWTSIISGYA 222
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-------FED 152
+ +PI++ IF Q+ P++ L V++A G++IHG FE
Sbjct: 223 QNGQPIEALRIFNQM-REVNVKPDQIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEFEI 281
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
DL+IS L YA CG + A F + +++ WN+MISG+ + G+ E+A+EL+R M
Sbjct: 282 DLLIS--LTAMYAKCGQVMFARLFFDQVRIPNLILWNAMISGYAKNGYAEEALELFRRMI 339
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
N PD +T+ V+ ACA+ LE W+S +I ++ + D
Sbjct: 340 TMNFGPDSITITSVILACAQMGSLELARWMSDYIGRSEFRND 381
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 14/185 (7%)
Query: 40 KRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K IH ++ F+ S + ++ C + +AR FDQ+ PNL WN +I
Sbjct: 266 KSIHGCVIKMGLEFEIDLLISLTAMYAKCG-----QVMFARLFFDQVRIPNLILWNAMIS 320
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-----HGMFE 151
Y+ + ++ +F +++ + P+ T+ VI A A+ + + + F
Sbjct: 321 GYAKNGYAEEALELFRRMI-TMNFGPDSITITSVILACAQMGSLELARWMSDYIGRSEFR 379
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+D +S++LI ++ CG + +A VF KDVV W+SMI G+ G +++I L+ M
Sbjct: 380 NDAFVSSALIDMFSKCGSVDLARDVFDRALDKDVVLWSSMIMGYGLHGRGQESINLFEAM 439
Query: 212 EVENV 216
+
Sbjct: 440 RQAGI 444
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 141/317 (44%), Gaps = 71/317 (22%)
Query: 12 PRHPNPTTLTVNNGHQRHPHFLT------NQKQLKRIHAQMLSTDFFFDPYSASKLFTPC 65
P NP N+ FL+ + QLK+I +QM+ T D +++S+L C
Sbjct: 33 PHKENPINWNTNHSFVLSNPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFC 92
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A+S + L+Y + PN ++WN IR + S+ P ++ +++ +++ P+ +
Sbjct: 93 AISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNY 152
Query: 126 TLPFVIKAAARPVQFRVGQAI-----HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T P + KA AR R+G I H F+ D+ +SN++IH CGDL A +F
Sbjct: 153 TYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKS 212
Query: 181 GKKDVVSWNSMIS-----------------------------GFVEGGFFEKAIELYRE- 210
+D+VSWNSMI+ G+ + G + A +L+ E
Sbjct: 213 CVRDLVSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEM 272
Query: 211 ------------------------------MEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
M+ N+ PDEVTMV LSAC++ L+ GI
Sbjct: 273 PDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGI 332
Query: 241 WVSSHIEKNGIKMDLTF 257
W+ +IEK+ + +++
Sbjct: 333 WIHHYIEKHELSLNVAL 349
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 6/172 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ A K+FD++P ++ WN +I Y ++ ++ +F ++ + P+E T+ +
Sbjct: 262 LDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN-INPDEVTMVSCLS 320
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A ++ VG IH E ++ + +LI YA CG + A VF + ++ ++
Sbjct: 321 ACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLT 380
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
W ++ISG G AI + EM +V PDEVT + +LSAC +E G
Sbjct: 381 WTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEG 432
>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 503
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 129/223 (57%), Gaps = 10/223 (4%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+K+ HAQ++ DP+ A++L S FS+L++ARK+FD + +P+++ N +I+ Y
Sbjct: 36 VKKAHAQVVVRGHEQDPFIAARLIDK--YSHFSNLDHARKVFDNLSEPDVFCCNVVIKVY 93
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+++D ++ ++ + + PN +T PFV+KA + G+ IHG + D
Sbjct: 94 ANADPFGEALKVYDAMRWRG-ITPNYYTYPFVLKACGAEGASKKGRVIHGHAVKCGMDLD 152
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-E 212
L + N+L+ FYA C D+ ++ VF I +D+VSWNSMISG+ G+ + AI L+ +M
Sbjct: 153 LFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMISGYTVNGYVDDAILLFYDMLR 212
Query: 213 VENV-KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E+V PD T V VL A A+ D+ G W+ +I K + +D
Sbjct: 213 DESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLD 255
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 107/225 (47%), Gaps = 16/225 (7%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWN 92
K+ + IH + D LF AL F +E +RK+FD+IP ++ +WN
Sbjct: 135 KKGRVIHGHAVKCGMDLD------LFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWN 188
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYN-SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
++I Y+ + + ++F ++ + S P+ T V+ A A+ G IH
Sbjct: 189 SMISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIV 248
Query: 152 D-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
D + LI Y+ CG + MA +F I + V+ W+++I + G ++A+
Sbjct: 249 KTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALA 308
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
L+R++ ++PD V + +LSAC+ LE G + + +E G+
Sbjct: 309 LFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGV 353
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%)
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E D I+ LI Y+ +L A VF + + DV N +I + F +A+++Y
Sbjct: 49 EQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVYDA 108
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M + P+ T VL AC + + G + H K G+ +DL
Sbjct: 109 MRWRGITPNYYTYPFVLKACGAEGASKKGRVIHGHAVKCGMDLDL 153
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 112/192 (58%), Gaps = 9/192 (4%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPI---QSFMIFLQLVYNSPYFPNEFTLPFVI 131
YAR +FDQIP+P + +N+LIRA SS+ + +++ +++ PN FTL F +
Sbjct: 79 YARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFAL 138
Query: 132 KAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF-VMIGKKDV 185
KA + G+ +H E + L++ YA C ++A+A VF M+G K++
Sbjct: 139 KACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNL 198
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+W++MI G+ G +A+ L+REM+ +V PDEVTMV V+SACAK L+ G WV +
Sbjct: 199 AAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAF 258
Query: 246 IEKNGIKMDLTF 257
I++ GI +DL
Sbjct: 259 IDRKGITVDLEL 270
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 9/219 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFD-QIPQPNLYTWNTLIRAY 98
+++H+Q PY + L + + AR +FD + NL W+ +I Y
Sbjct: 151 RQLHSQAFRRGLEPSPYVQTGLLN--LYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGY 208
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----D 153
S ++ +F ++ + P+E T+ VI A A+ +G+ +H + D
Sbjct: 209 SRVGMVNEALGLFREM-QAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVD 267
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L +S +LI YA CG + A VF + ++D +W++MI G G E A++L+ M
Sbjct: 268 LELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLE 327
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
V+P+ VT + VLSACA + G S +++ GIK
Sbjct: 328 LKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIK 366
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 106/197 (53%), Gaps = 6/197 (3%)
Query: 59 SKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS 118
SKL C S F + A +F QI P++Y WN++IR + ++ P S +++ QL+ N
Sbjct: 29 SKLIDFCVDSXFGDINNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENG 88
Query: 119 PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMA 173
Y P+ FT PFV+KA G+ IH FE D + L+H Y C D+
Sbjct: 89 -YSPDHFTFPFVLKACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSG 147
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF I +VV+W +I+G+V +A++++++M V+P+E+TMV L CA+
Sbjct: 148 LKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARS 207
Query: 234 RDLEFGIWVSSHIEKNG 250
RD + G WV HI K G
Sbjct: 208 RDFDTGQWVHQHIRKAG 224
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 120/240 (50%), Gaps = 21/240 (8%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
+ +Q K IH ++ + F D Y+A+ L + CA ++ K+FD IP N+
Sbjct: 106 IADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCA-----DMKSGLKVFDNIPIWNVV 160
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
W LI Y ++++P ++ +F + + PNE T+ + AR F GQ +H
Sbjct: 161 AWTCLIAGYVNNNQPYEALKVFKDMSH-CGVEPNEITMVNALIXCARSRDFDTGQWVHQH 219
Query: 150 FE------------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
+++++ +++ YA CG +A +F + ++++VSWNSMI+ + +
Sbjct: 220 IRKAGYDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQ 279
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
++A++L+ +M + PD+ T + VLS CA L G V +++ K GI D++
Sbjct: 280 YERHKEALDLFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISL 339
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 53 FDPY---SASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI 105
+DP+ S S + A+ + S + AR +F+++PQ N+ +WN++I AY+ +
Sbjct: 225 YDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHK 284
Query: 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSL 160
++ +F + + S +P++ T V+ A +GQ +H D+ ++ +L
Sbjct: 285 EALDLFFDM-WTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATAL 343
Query: 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPD 219
+ YA G L A +F + K+DVV W SMI+G G +A+ +++ M E ++ PD
Sbjct: 344 LDMYAKTGGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPD 403
Query: 220 EVTMVVVLSACA 231
+T + VL AC+
Sbjct: 404 HITYIGVLFACS 415
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 40/87 (45%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
GD+ A VF I V WNSMI GFV ++ LYR++ PD T VL
Sbjct: 41 GDINNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVL 100
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMD 254
AC D + G + I K+G + D
Sbjct: 101 KACCAIADQDCGKCIHCCIVKSGFEAD 127
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 128/250 (51%), Gaps = 37/250 (14%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQLK HAQ+L+ D ++ S+L C+ SL +A K+F QI P + NT+I+
Sbjct: 19 KQLKEAHAQVLTCGLGTDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICICNTMIK 78
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
A+ + I + I+ Q++ N Y P+ +TLP+V+KA A +G++ HG F
Sbjct: 79 AFVLKGKLINTIQIYSQMLENGLY-PDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFW 137
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVF------------VMIGK----------------- 182
D+ + N+LI Y+ G++ A C+F VMI
Sbjct: 138 FDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEA 197
Query: 183 --KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
KD W S+ISG+V+ F++ ++++R M+ ++PDE +V +L ACA +E G+
Sbjct: 198 PMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGV 257
Query: 241 WVSSHIEKNG 250
WV ++++ G
Sbjct: 258 WVHRYLDQLG 267
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 37/224 (16%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
H Q + F+FD + + L S+F ++ AR +FD++P +W +I Y+
Sbjct: 128 HGQSVKLGFWFDIFVGNTLIA--MYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVG 185
Query: 103 EPIQSFMIF------------------------------LQLVYNSPYFPNEFTLPFVIK 132
+ + M+F +L+ ++ P+E L ++
Sbjct: 186 DVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILC 245
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A +G +H + + +S LI YA CG L +A +F + ++D +
Sbjct: 246 ACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTIC 305
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
WN+MISG G + A+ L+ EME VKPD++T + + +AC+
Sbjct: 306 WNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTACS 349
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 44/274 (16%)
Query: 27 QRHPHFLTNQK-----QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFD 81
+ HPH K LK+IH+ ++ + ++ SKL CALS L YA +F
Sbjct: 24 ENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFH 83
Query: 82 QIPQ--PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139
I PN++ WNTLIRA+S + P S +F Q++++ Y PN T P + K+ A+
Sbjct: 84 SIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLY-PNSHTFPSLFKSCAKSKA 142
Query: 140 FRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVF-------------VMIG 181
+ +H + + SLIH Y+ G+L A VF ++ G
Sbjct: 143 THEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITG 202
Query: 182 ------------------KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
KDVVSWN+MI+G+V+ G FE+A+ + M+ +V P++ TM
Sbjct: 203 YVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTM 262
Query: 224 VVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
V VLSAC R LE G W+ S + G +L
Sbjct: 263 VSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQL 296
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 10/230 (4%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIP 84
HPH T+ + ++ FD + + AL T ++ AR++FD+IP
Sbjct: 161 HPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIP 220
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
++ +WN +I Y S ++ F ++ + PN+ T+ V+ A +G+
Sbjct: 221 AKDVVSWNAMIAGYVQSGRFEEALACFTRM-QEADVSPNQSTMVSVLSACGHLRSLELGK 279
Query: 145 AIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
I D +L + N+L+ Y+ CG++ A +F + KDV+ WN+MI G+
Sbjct: 280 WIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLS 339
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+E+A+ L+ M ENV P++VT + VL ACA L+ G WV ++I+KN
Sbjct: 340 LYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKN 389
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 10/181 (5%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S + ARK+FD + ++ WNT+I Y ++ ++F +++ PN+ T
Sbjct: 305 SKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLF-EVMLRENVTPNDVTF 363
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDL---------VISNSLIHFYAVCGDLAMAYCVFV 178
V+ A A +G+ +H + +L + S+I YA CG + +A VF
Sbjct: 364 LAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFR 423
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+G + + SWN+MISG G E+A+ L+ EM E +PD++T V VLSAC + +E
Sbjct: 424 SMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVEL 483
Query: 239 G 239
G
Sbjct: 484 G 484
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 29/174 (16%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A ++F + +L +WN +I + + ++ +F +++ N + P++ T V+
Sbjct: 415 VEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMI-NEGFQPDDITFVGVLS 473
Query: 133 AAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
A + +G D IS L H+ MI
Sbjct: 474 ACTQAGFVELGHRYFSSMNKDYGISPKLQHY-------------------------GCMI 508
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G F++A L ME+E PD +L+AC +EFG +V+ +
Sbjct: 509 DLLARSGKFDEAKVLMGNMEME---PDGAIWGSLLNACRIHGQVEFGEYVAERL 559
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 134/224 (59%), Gaps = 7/224 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWN 92
T+ K+LK+I A + T D +KL C + T +S++YA ++F+ IPQP++ +N
Sbjct: 37 TSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFN 96
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
++ R YS S+ P+++ +F++ + N P+++T P ++KA F+ G+ +H +
Sbjct: 97 SMFRGYSRSNAPLKAISLFIKAL-NYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIK 155
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
++ + +LI+ YA C D+ A VF I + VVS+N++I+G+ +A+ L
Sbjct: 156 LGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSL 215
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+R+++ +KP++VT++ VLS+CA L+ G W+ +++KNG+
Sbjct: 216 FRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGL 259
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 101/200 (50%), Gaps = 8/200 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q K++H + +PY L + + ++ A+++FD+I +P + ++N +I
Sbjct: 144 QQGKQLHCLAIKLGLNENPYVCPTLIN--MYAGCNDVDGAQRVFDEILEPCVVSYNAIIT 201
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD--- 153
Y+ S P ++ +F QL PN+ T+ V+ + A +G+ IH + +
Sbjct: 202 GYARSSRPNEALSLFRQLQARK-LKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLD 260
Query: 154 --LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ ++ +LI YA CG L A VF + +D +W++MI + G + + ++ EM
Sbjct: 261 KYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEM 320
Query: 212 EVENVKPDEVTMVVVLSACA 231
V+PDE+T + +L AC+
Sbjct: 321 ARAKVQPDEITFLGLLYACS 340
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 128/251 (50%), Gaps = 40/251 (15%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+IHA ++ + +K+ C + YA +F Q+ PN++T+N +IR
Sbjct: 25 QLKKIHAHVVKLSLSQSNFLVTKMLDSC--DNLGHVSYATLLFKQLLHPNIFTYNAIIRT 82
Query: 98 YSSSDEPIQSFMIFLQLVYNS--PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---FED 152
Y+ + + +F+Q++ +S FP++FT PFVIK+ + R+G +HG+ F
Sbjct: 83 YAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGA 142
Query: 153 DL--VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS-------------------- 190
D + N+LI Y GDL A VF + +DV+SWNS
Sbjct: 143 DFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDD 202
Query: 191 -----------MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
MI+G+ G + A++++REM++ ++PDE++++ VL ACA+ LE G
Sbjct: 203 MPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVG 262
Query: 240 IWVSSHIEKNG 250
W+ + +KNG
Sbjct: 263 KWIHMYADKNG 273
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 17/180 (9%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTL 127
+ AR++FD +P + +W T+I Y + +F +Q+V P+E ++
Sbjct: 190 LGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMV---GIEPDEISI 246
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDD------LVISNSLIHFYAVCGDLAMAYCVFVMIG 181
V+ A A+ VG+ IH M+ D I N+LI YA CG + A+ +F +
Sbjct: 247 IAVLPACAQLGALEVGKWIH-MYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLV 305
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+KDV+SW++MI G G +AI+L+ EM V P+E+T + VL AC+ G+W
Sbjct: 306 EKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHT-----GLW 360
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 129/235 (54%), Gaps = 17/235 (7%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASK--LFTPCALSTFSS---------LEYARKMFDQ 82
+++ +L+ IHA + + K +FT +LS S L YA +F
Sbjct: 30 SSKHKLRXIHAFSIRHGVLLNNPDMGKHLIFTIVSLSAPMSYAYNVFTWVLSYAYNVFTM 89
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
I PN++TWNT+ R Y+ SD P + + Q++ S P+ T PF++KA ++ + R
Sbjct: 90 IHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIV-SRIEPDTHTYPFLLKAISKSLNVRE 148
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+AIH + FE + + NSL+H YA CGD A+ VF ++ +D+V+ S+I+GF
Sbjct: 149 GEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFAL 208
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
G +A+ L+REM E V+PD T+V +LSA A+ LE G V ++ K G++
Sbjct: 209 NGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLR 263
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 38/242 (15%)
Query: 35 NQKQLKRIHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
N ++ + IH+ + F F S ++ C E A +F+ + +L
Sbjct: 145 NVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACG-----DTESAHNVFELMRDRDLVAX 199
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH---- 147
++I ++ + P ++ +F ++ P+ FT+ ++ A+A +G+ +H
Sbjct: 200 ISVINGFALNGRPSEALTLFREMSAEGVE-PDGFTVVSLLSASAELGALELGRRVHVYLL 258
Query: 148 --GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
G+ E+ V +NSL+ YA C + +++ VSW S+I G GF E+A+
Sbjct: 259 KVGLRENSHV-TNSLLDLYAKCDA--------IWEXERNAVSWTSLIVGLAVNGFGEEAL 309
Query: 206 ELYREMEVENVKPDEVTMVVVLSACA------------KKRDLEFGIWVSSHIEKNGIKM 253
EL+REME + + P E+T V VL AC+ ++ EFGI IE G +
Sbjct: 310 ELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIM--PRIEHYGCMV 367
Query: 254 DL 255
DL
Sbjct: 368 DL 369
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 12/230 (5%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+++ L +IHAQ++ + + +K A + YARK+FD+ P+P+++ WN
Sbjct: 82 VHKRHLNQIHAQLVVSGLVESGFLVTKFVN--ASWNIGEIGYARKVFDEFPEPSVFLWNA 139
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IR YSS + + ++ ++ S P+ FTLP V+KA + VG+ +HG
Sbjct: 140 IIRGYSSHNFFGDAIEMYSRM-QASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRL 198
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
FE D+ + N L+ YA CG + A VF + +++VSW SMISG+ + G +A+ ++
Sbjct: 199 GFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIF 258
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+M NVKPD + +V VL A DLE G + + +KM L FE
Sbjct: 259 GQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCV----VKMGLEFE 304
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 18/226 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KR+H Q+ F D + + L+ C +E AR +F+ + N+ +W ++I
Sbjct: 189 KRVHGQIFRLGFESDVFVQNGLVALYAKCG-----RVEQARIVFEGLDDRNIVSWTSMIS 243
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------- 149
Y + P+++ IF Q+ + P+ L V++A G++IHG
Sbjct: 244 GYGQNGLPMEALRIFGQMRQRNVK-PDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLE 302
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
FE DL+IS L YA CG + +A F + +V+ WN+MISG+ + G+ +A+ L++
Sbjct: 303 FEPDLLIS--LTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQ 360
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EM +N++ D +T+ + ACA+ L+ W+ +I K + D+
Sbjct: 361 EMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDV 406
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 14/211 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q K IH ++ F+P S + ++ C + AR FDQ+ PN+ WN
Sbjct: 287 EQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCG-----QVMVARSFFDQMEIPNVMMWNA 341
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+I Y+ + ++ +F +++ + + T+ I A A+ + + +
Sbjct: 342 MISGYAKNGYTNEAVGLFQEMISKNIR-TDSITVRSAILACAQVGSLDLAKWMGDYINKT 400
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ +D+ ++ +LI +A CG + +A VF KDVV W++MI G+ G + AI+L+
Sbjct: 401 EYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLF 460
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
M+ V P++VT V +L+AC +E G
Sbjct: 461 YAMKQAGVCPNDVTFVGLLTACNHSGLVEEG 491
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 12/222 (5%)
Query: 29 HPHFL-----TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI 83
HP L T+ QLK+I A M T + S++ CALS + +A +F Q+
Sbjct: 51 HPILLAMESCTSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFSQL 110
Query: 84 PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG 143
PN Y WNT+IR YS + F+ F Q+V + F +KA + + G
Sbjct: 111 QNPNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCR-SFVFALKACEQFLGVLEG 169
Query: 144 QAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
+++H + F L++ N L+HFY + G L +A VF I ++DVVSW SMI G+ +
Sbjct: 170 KSVHCVVWKMGFVYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGYSKH 229
Query: 199 GFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFG 239
+ ++A++L+ M + V+P+EVTM+ VLS+C++K DL G
Sbjct: 230 KWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILG 271
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------EDDLVISNSLIHFYAVCGDL 170
+ + P E TL V+ + VGQ IH + E ++++N+LI YA CG +
Sbjct: 314 GAAFAPMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVI 373
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
A VF + ++++VSWNSMI+ + G ++A+ ++ M KPD++T+V VLSAC
Sbjct: 374 HEAAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLSAC 433
Query: 231 A 231
+
Sbjct: 434 S 434
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A K+F+ +P+ NL +WN++I AY+S Q+ +F +++ + + P++ TL V+ A +
Sbjct: 376 AAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMI-SGGFKPDDITLVGVLSACS 434
Query: 136 RPVQFRVGQ 144
GQ
Sbjct: 435 HGGLVAEGQ 443
>gi|297733701|emb|CBI14948.3| unnamed protein product [Vitis vinifera]
Length = 401
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 128/253 (50%), Gaps = 37/253 (14%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ L IHA ++ T P A L A+ +S++YA +F QI +P+ +N +IR
Sbjct: 38 RDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIR 97
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
++ P ++ ++F ++ NS P+EFT P ++K +R G+ IH + F
Sbjct: 98 GFTLKQSPHEAILLFKEMHENSVQ-PDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFG 156
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE--------- 202
+ N+LIH YA CG++ +A VF + +++V +WNSM +G+ + G +E
Sbjct: 157 SHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLYVEE 216
Query: 203 ----------------------KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+A++L+ EM+ N+ P+E+TMV +LS+CA LE G
Sbjct: 217 KGLKGNPTLITSLVDIQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGK 276
Query: 241 WVSSHIEKNGIKM 253
WV I+K +K+
Sbjct: 277 WVHFFIKKKRMKL 289
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 136/246 (55%), Gaps = 9/246 (3%)
Query: 20 LTVNNGHQRHPHFLTNQKQL---KRIHAQMLSTDFFFDPYSASKLFT-PCALSTFSSLEY 75
LT +Q T++K + K+IHA ++ PYS L + A + +
Sbjct: 15 LTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPH 74
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD++ P+L++WN +IR Y++S + +F+Q++ + +P+ +T PFVIKA
Sbjct: 75 ARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG 134
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ +G IH F+ D + NSL+ Y CG++ +A VF ++ ++ +VSWN+
Sbjct: 135 DYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNT 194
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI+G+ + G ++A+ ++ M + ++PD T+V VL C+ ++LE G V + +E
Sbjct: 195 MINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKN 254
Query: 251 IKMDLT 256
+ D++
Sbjct: 255 LGEDIS 260
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 111/206 (53%), Gaps = 14/206 (6%)
Query: 42 IHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
IHA+ + + F D + S ++ C +E AR++FD + + L +WNT+I Y
Sbjct: 145 IHARTVMSGFDSDAFVQNSLMAMYMNCG-----EMEVARRVFDLMRERTLVSWNTMINGY 199
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DD 153
+ ++ M+F ++ P+ T+ V+ + + VG+ +H + E +D
Sbjct: 200 FKNGCVKEALMVFDWMI-GKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGED 258
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + NSL+ YA CG++ A +F + K+DVVSW +M++G++ G A+ L + M+
Sbjct: 259 ISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQF 318
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFG 239
E+VKP+ VT+ VLSACA L+ G
Sbjct: 319 ESVKPNFVTLASVLSACASLYSLKHG 344
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+++ A+ +F ++ + ++ +W T++ Y + + +S ++ Q++ PN TL V
Sbjct: 273 GNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDA-RSALLLCQMMQFESVKPNFVTLASV 331
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A + G+ +HG E ++++ +LI YA C ++ +++ VF K+
Sbjct: 332 LSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRT 391
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
WN++ISG + G KAIEL+++M +E V P++ T+ +L A A DL+
Sbjct: 392 APWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQ 443
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 8/170 (4%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
++F + + WN +I + ++ +F Q++ + PN+ TL ++ A A
Sbjct: 381 RVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEA-VDPNDATLNSLLPAYAFL 439
Query: 138 VQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD--VVSWNS 190
+ + +HG F + ++ LI Y+ CG L A+ +F I KKD +++W++
Sbjct: 440 TDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSA 499
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+I+G+ G E AI L+ +M VKP+E+T +L AC+ ++ G+
Sbjct: 500 IIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGL 549
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 128/257 (49%), Gaps = 45/257 (17%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
LK+IHA L TD K+ A+S L YA+++FDQ+PQPN + +NT+IR
Sbjct: 30 NHLKQIHAHSLLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRLFDQMPQPNTFFYNTIIR 89
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR-------PVQFRVGQAIHGM 149
Y+ S P +F Q+ N P+EFT F+IKA +R P + IHG
Sbjct: 90 GYAKSSSPSYCVNLFNQMRQNH-VDPDEFTFNFLIKARSRVHKVHNFPSTLECDE-IHGA 147
Query: 150 -----FEDDLVISNSLIHFYAV-------------------------------CGDLAMA 173
F L + N+LI+ YAV G+L +A
Sbjct: 148 VFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELELA 207
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF + +KDVVSW +M+SG+ + +A+EL+ EM ++PDEVT+V V+SAC
Sbjct: 208 RQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACTNL 267
Query: 234 RDLEFGIWVSSHIEKNG 250
D+E G+ V S+I +NG
Sbjct: 268 GDVETGMNVHSYINENG 284
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE AR++FD +P+ ++ +W ++ YS ++ ++ +F ++ ++ P+E T+ V
Sbjct: 202 GELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMS-DAGIRPDEVTIVSV 260
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I A G +H ++ + + N+LI+ YA CG + A+ VF + +K +
Sbjct: 261 ISACTNLGDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSL 320
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++WNSMIS G+ E A EL+ M + PD +T + +L A K ++ G
Sbjct: 321 ITWNSMISACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYTHKGLVDEG 374
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 141/266 (53%), Gaps = 42/266 (15%)
Query: 27 QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP 86
+ H H N KQ RI +QM+ T F D ++AS+L S F L+Y+ ++FD+I
Sbjct: 33 ETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENS 92
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA-RPVQFRVGQA 145
N + WNT++RAY S+ ++ +++ +V N+ P+ +T P V++A A R ++F G+
Sbjct: 93 NGFMWNTMMRAYIQSNSAEKALLLYKLMVKNN-VGPDNYTYPLVVQACAVRLLEFG-GKE 150
Query: 146 IHGM-----FEDDLVISNSLIHFYAVCGDL------------------------------ 170
IH F+ D+ + N+LI+ YAVCG++
Sbjct: 151 IHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGD 210
Query: 171 ----AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
A+ +F + +KD+VSW+++ISG+ + G +E+A+ ++ EM ++ DEV +V V
Sbjct: 211 MGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSV 270
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIK 252
LSACA ++ G + + + GI+
Sbjct: 271 LSACAHLSIVKTGKMIHGLVIRMGIE 296
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 101/187 (54%), Gaps = 11/187 (5%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A K+F+++ + ++ +W+ LI Y + ++ ++F+++ N +E + V+ A A
Sbjct: 217 AWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL-DEVVVVSVLSACA 275
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA----VCGDLAMAYCVFVMIGKKDVV 186
+ G+ IHG+ E + + N+LIH Y+ CG + A VF + +K V
Sbjct: 276 HLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVS 335
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG-IWVSSH 245
SWN++I G G E++++++ EM+ V P+E+T + VL AC ++ G +S
Sbjct: 336 SWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASM 395
Query: 246 IEKNGIK 252
IEK+GI+
Sbjct: 396 IEKHGIE 402
>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
Length = 565
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 124/220 (56%), Gaps = 6/220 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+LK+IH+ M+ T + S+L CA S +EYAR +FDQ Q +Y WN++I+
Sbjct: 19 KELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIK 78
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + + + ++ ++ ++P+ FT PFV+K + GQ++H FE
Sbjct: 79 GYCNGGDKFGALFMYEEM-QRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFE 137
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ S+ L++ Y CGDL VF I K +VV+W S+I+GFV ++A+ L+++M
Sbjct: 138 LDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDM 197
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
E E V+P+E+TM L+A A+ RD+ G V + + G+
Sbjct: 198 ENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGL 237
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 94/163 (57%), Gaps = 9/163 (5%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FD++PQ NL WN++I A+S ++ +F+ + + + PN+ T VI+A
Sbjct: 267 ARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMEL-AGFVPNKATFLSVIRACT 325
Query: 136 RPVQFR-VGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
++FR GQ++H F + + I +L+ YA GD A +F + KKDV++W
Sbjct: 326 H-LRFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKSGDADTALKIFSKLRKKDVMAWT 384
Query: 190 SMISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACA 231
+MISG G ++A+ ++R ME E V PD++T + VL AC+
Sbjct: 385 TMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACS 427
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 108/210 (51%), Gaps = 21/210 (10%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS---LEYARKMFDQIPQPNLYTWNTLIR 96
+ +H +++ T F D Y++S C L+ + S L K+F+ IP+ N+ W +LI
Sbjct: 125 QSVHNRIVKTGFELDVYTSS-----CLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIA 179
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI---------- 146
+ ++D+P ++ +F + N PNE T+ + AAAR G+ +
Sbjct: 180 GFVNNDQPKEALRLFKDM-ENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLD 238
Query: 147 --HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
H +++++ +++ YA CG L A +F + ++++V WNSMIS F + G +A
Sbjct: 239 PFHTNSRFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEA 298
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKR 234
+ L+ +ME+ P++ T + V+ AC R
Sbjct: 299 LRLFVDMELAGFVPNKATFLSVIRACTHLR 328
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 144 QAIHGMFEDDLVISN-----SLIHFYA--VCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
+ IH + V+ N LI F A GD+ A VF + V WNSMI G+
Sbjct: 22 KQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYC 81
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
GG A+ +Y EM+ + PD T VL C+ L +G V + I K G ++D+
Sbjct: 82 NGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDV 140
>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
Length = 548
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 11/206 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS-SLEYARKMFDQIPQPNLYTWNTLIR 96
+L ++H M+ + + S+L C + +L YAR +F+ I P++Y WN++IR
Sbjct: 21 ELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIR 80
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA--RPVQFRVGQAIHGM----- 149
YS+S P ++ +IF Q + Y P+ FT P+V+KA + R +QF G +HG
Sbjct: 81 GYSNSPNPDKA-LIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQF--GSCVHGFVVKTG 137
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
FE ++ +S L+H Y CG++ VF I + +VV+W S+ISGFV F AIE +R
Sbjct: 138 FEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFR 197
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRD 235
EM+ VK +E MV +L AC + D
Sbjct: 198 EMQSNGVKANETIMVDLLVACGRCFD 223
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 15/201 (7%)
Query: 53 FDPYSASKLFTPCALST--------FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEP 104
FDPY SK+ L+T L AR +FD +P+ L +WN++I YS + +
Sbjct: 222 FDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDA 281
Query: 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNS 159
++ +FL ++ + P++ T VI+A+ ++GQ+IH F D I +
Sbjct: 282 EEALCMFLDML-DLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCA 340
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKP 218
L++ YA GD A F + KKD ++W +I G G +A+ +++ M E N P
Sbjct: 341 LVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATP 400
Query: 219 DEVTMVVVLSACAKKRDLEFG 239
D +T + VL AC+ +E G
Sbjct: 401 DGITYLGVLYACSHIGLVEEG 421
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 109/220 (49%), Gaps = 21/220 (9%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTF---SSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+H ++ T F + Y ++ C L + + Y ++F+ IPQ N+ W +LI +
Sbjct: 129 VHGFVVKTGFEVNMYVST-----CLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGF 183
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV----QFRVGQAIHGMFEDDL 154
+++ + F ++ N NE + ++ A R Q +VG ++
Sbjct: 184 VNNNRFSDAIEAFREMQSNGVK-ANETIMVDLLVACGRCFDPYFQSKVGF--------NV 234
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+++ SLI YA CGDL A +F + ++ +VSWNS+I+G+ + G E+A+ ++ +M
Sbjct: 235 ILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDL 294
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ PD+VT + V+ A + + G + +++ K G D
Sbjct: 295 GIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKD 334
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 146 IHGMFEDDLVISN-----SLIHFYAVCGD---LAMAYCVFVMIGKKDVVSWNSMISGFVE 197
+HG+ VI N LI F C + L+ A VF I V WNSMI G+
Sbjct: 25 LHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSN 84
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+KA+ Y+EM + PD T VL AC+ RD++FG V + K G ++++
Sbjct: 85 SPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNM 142
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 9/227 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKL-FTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
T+ LK++HAQ+L + KL + CALS SSL+YA +F+ IP+P + N
Sbjct: 34 TSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALS--SSLDYALSVFNLIPKPETHLCN 91
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+R S S+EP ++ +++ + + + F+ P ++KA +R G IHG+
Sbjct: 92 RFLRELSRSEEPEKTLLVY-ERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAK 150
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F+ D + L+ YA CG +A A +F + +DVV+W+ MI G+ + G F A+ L
Sbjct: 151 LGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLL 210
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ EM+ NV+PDE+ + VLSAC + +L +G + I +N I +D
Sbjct: 211 FEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVD 257
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 16/222 (7%)
Query: 30 PHFLTNQKQLKRIHAQMLSTDF---FFDPYSASKLFTPCAL----STFSSLEYARKMFDQ 82
PH Q L ++A S D F+ + L A+ S +E AR +F+Q
Sbjct: 258 PHL---QSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQ 314
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+ + +L W+ +I Y+ SD P ++ +F ++ + P++ T+ VI A A
Sbjct: 315 MVKKDLVCWSAMISGYAESDSPQEALNLFNEM-QSLGIKPDQVTMLSVITACAHLGALDQ 373
Query: 143 GQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
+ IH F L I+N+LI YA CG L A +F + +K+V+SW MIS F
Sbjct: 374 AKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAM 433
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G A+ + +ME EN++P+ +T V VL AC+ +E G
Sbjct: 434 HGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEG 475
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 117/248 (47%), Gaps = 45/248 (18%)
Query: 42 IHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
IH F DP+ + +++ C + AR MFD++ ++ TW+ +I Y
Sbjct: 144 IHGLAAKLGFDSDPFVQTGLVRMYAACG-----RIAEARLMFDKMFHRDVVTWSIMIDGY 198
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDLVIS 157
S + ++F ++ N P+E L V+ A R G+ IH + E+++V+
Sbjct: 199 CQSGLFNDALLLFEEM-KNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVD 257
Query: 158 ----NSLIHFYAVCG--DLAM-----------------------------AYCVFVMIGK 182
++L+ YA CG DLA+ A VF + K
Sbjct: 258 PHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVK 317
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
KD+V W++MISG+ E ++A+ L+ EM+ +KPD+VTM+ V++ACA L+ W+
Sbjct: 318 KDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWI 377
Query: 243 SSHIEKNG 250
++KNG
Sbjct: 378 HLFVDKNG 385
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 134/272 (49%), Gaps = 42/272 (15%)
Query: 27 QRHPHF-----LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFD 81
Q HP + + K+IHA ++ T ++ SKL A+S + YA +F+
Sbjct: 28 QEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFN 87
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
I +PNL+ WN++IR S S P + + F++++Y S PN +T PF++K+ A+
Sbjct: 88 SIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIY-SGVEPNSYTFPFLLKSCAKLASAH 146
Query: 142 VGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF------------VMIGK-- 182
G+ IH F D+ I SLI+ YA G++ A VF +I
Sbjct: 147 EGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYA 206
Query: 183 -----------------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
KDVVSWN+MI+G+ + G ++A+ L+ +M NV P+E T+V
Sbjct: 207 LWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVS 266
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
VLSACA+ L+ G + S IE G+ +L
Sbjct: 267 VLSACAQSNALDLGNSMRSWIEDRGLCSNLKL 298
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 113/204 (55%), Gaps = 10/204 (4%)
Query: 52 FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF 111
F D S + L AL + ++ AR++FD++P ++ +WN +I Y+ ++ ++F
Sbjct: 192 FRDAISFTALIAGYALWGY--MDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLF 249
Query: 112 LQL-VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYA 165
+ N P PNE T+ V+ A A+ +G ++ ED +L + N+LI Y+
Sbjct: 250 EDMRKANVP--PNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYS 307
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
CGDL A +F + ++DV+SWN MI G+ +++A+ L+REM V+P E+T +
Sbjct: 308 KCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLS 367
Query: 226 VLSACAKKRDLEFGIWVSSHIEKN 249
+L +CA ++ G W+ ++I KN
Sbjct: 368 ILPSCAHLGAIDLGKWIHAYINKN 391
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S L+ AR++FD + + ++ +WN +I Y+ ++ +F +++ S P E T
Sbjct: 307 SKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLA-SGVEPTEITF 365
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDL-----VISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ + A +G+ IH + +S SLI YA CG++ A VF +
Sbjct: 366 LSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKI 425
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
K + SWN+MI G G +KA EL+ +M + ++P+E+T V +LSAC ++ G
Sbjct: 426 KSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLG 482
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 29/171 (16%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD + +L +WN +I + + ++F +F ++ + PNE T ++ A
Sbjct: 416 ARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIE-PNEITFVGILSACK 474
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
+GQ D IS H+ C+ ++G+
Sbjct: 475 HAGLVDLGQQFFSSMVQDYKISPKSQHYG----------CMIDLLGR------------- 511
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G FE+A L + ME VKPD +L AC +E G V+ +
Sbjct: 512 --AGLFEEAESLLQNME---VKPDGAIWGSLLGACRDHGRVELGELVAERL 557
>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 134/237 (56%), Gaps = 15/237 (6%)
Query: 31 HFLTNQK---QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN 87
H LT + Q K++HA+++ + Y ASKL S + L +AR +FDQIP N
Sbjct: 32 HHLTELRLPLQAKQLHARLILFSVTPENYLASKLVA--LYSKTNHLAFARYVFDQIPHKN 89
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV--QFRVGQA 145
+++N ++ +YS + + +F L S N ++ ++K+ + ++G+
Sbjct: 90 TFSYNAMLISYSLHNRHGDALDLFSSLA--SSNLVNNISITCLLKSLSSFTLSDVKLGKE 147
Query: 146 IHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
+HG F+ D+ + N+LI +Y+ C DL ++ VF + K+DVVSWNSMISG+ +GG
Sbjct: 148 VHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGL 207
Query: 201 FEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+E LYREM + +P+ VT+V VL AC + +DL FG+ V I N +++D++
Sbjct: 208 YEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDIS 264
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 7/187 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L++ K K +H +L T F D + + L T S L+ +RK+FD++ + ++ +WN
Sbjct: 139 LSDVKLGKEVHGFVLRTGFDADVFVENALITY--YSKCYDLDLSRKVFDRMTKRDVVSWN 196
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
++I YS ++ ++V S + PN T+ V++A + G +H D
Sbjct: 197 SMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVD 256
Query: 153 -----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
D+ + N+LI YA CG L A +F + +KD V++ ++ISG + G+ ++++EL
Sbjct: 257 NQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLEL 316
Query: 208 YREMEVE 214
+R M+ +
Sbjct: 317 FRGMKTQ 323
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 40/206 (19%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA---YSSSDEPIQSF--------- 108
L+ C SL+YAR++FD++ + + T+ +I + D+ ++ F
Sbjct: 272 LYAKCG-----SLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILS 326
Query: 109 ---MIFLQLVYNS---------------PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
+ LV N+ + PN TL V+ A + G+ IH
Sbjct: 327 TWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYA 386
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
+ ++ ++ ++I YA G L A VF + +V W ++IS + G A+
Sbjct: 387 IKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLAL 446
Query: 206 ELYREMEVENVKPDEVTMVVVLSACA 231
L+ EM + ++PD VT VL+ACA
Sbjct: 447 GLFHEMLKQGIQPDPVTFTAVLAACA 472
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 135/232 (58%), Gaps = 13/232 (5%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
TN +QLK+IHA+ + + + + +K+ + + + L+YA ++F+Q +P+ + +N
Sbjct: 17 TNIQQLKQIHAKSIISSLSYTQFIITKIIN--SFLSHACLDYATQVFNQTQEPDGFIYNA 74
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IRAYSSS P + I+ ++ +++T PFV KA A G+ +HG+
Sbjct: 75 MIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRI 134
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+E D + +SL++FY VCG++ A VF KDVV WN++I+G+ G + ++
Sbjct: 135 GYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVF 194
Query: 209 REM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN-----GIKMD 254
+EM EV+ V+P+E TM+ ++ AC + ++L+ G + ++ K+ G+K++
Sbjct: 195 KEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLE 246
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 14/221 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H ++ + D + S L + C + A+++FD+ ++ WN LI
Sbjct: 125 KEVHGVIVRIGYELDGFLQSSLLNFYMVCG-----EIGNAQQVFDEFDAKDVVFWNALIT 179
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
Y+ + SF +F ++V PNE T+ +I A ++G+AIHG D+V+
Sbjct: 180 GYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVL 239
Query: 157 SN------SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+LI+ Y CG L A +F I +K+ V WNS+I G+ + G + IEL RE
Sbjct: 240 REGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLRE 299
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
M + N+KPD T+ VLSACA+ G WV EK GI
Sbjct: 300 MHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGI 340
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 16/186 (8%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY---SSSDEPIQSFMIFLQLVYN 117
L+ C L+ ARK+FD+IP+ N WN+LI Y S +E I+ L+ ++
Sbjct: 252 LYVKCGY-----LDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIE----LLREMHL 302
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED----DLVISNSLIHFYAVCGDLAMA 173
S P+ FT+ V+ A A+ F +G +H E D+ I +LI YA CG + A
Sbjct: 303 SNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFIGAA 362
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF + +++V +WN+++SG+ G E AIEL+ EM +PD +T + VL ACA
Sbjct: 363 RKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHS 422
Query: 234 RDLEFG 239
+E G
Sbjct: 423 GLVENG 428
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 29/173 (16%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FDQ+ + N+ TWN ++ Y+S + + +F ++ S P+ T V+ A A
Sbjct: 362 ARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEM-RESGARPDSITFLAVLHACA 420
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
G+ E+ + ++ +Y + + C+ ++G+
Sbjct: 421 HS----------GLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGR------------- 457
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
G ++A EL + M VE P+ V +LSAC+ ++E G W + H+ K
Sbjct: 458 --AGLLQEARELIKMMVVE---PNVVVWGALLSACSIHGNIEIGEWAAHHMIK 505
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 11/223 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
R+H ++ + DP S L C + SL YAR +F +IP P+ +NT+IR++S
Sbjct: 6 RLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSR 65
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLV 155
P S F + N N FT PFV+KA +R ++ +H + + D+
Sbjct: 66 F-FPSHSLFYFFSMRSNGIPLDN-FTFPFVLKACSR---LQINLHLHSLIVKYGLDSDIF 120
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ N+LI Y CG L MA VF + ++D VSW+++I+ F+ G+ +A++L+ +M++E+
Sbjct: 121 VQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLED 180
Query: 216 -VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
V PDEVTM+ V+SA + DLE G WV + I + G+ + +
Sbjct: 181 KVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVAL 223
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C SLE A K+FD++ + + +W+T+I ++ ++ ++ +F ++ P+E
Sbjct: 127 CVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDE 186
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVM 179
T+ VI A + +G+ + + + +LI ++ CG + + VF
Sbjct: 187 VTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEK 246
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ ++V++W ++I+G G +A+ ++ M V+PD VT VL AC+
Sbjct: 247 MAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACS 298
>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
Length = 562
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 124/219 (56%), Gaps = 6/219 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+LK+IH+ M++T + S+L CA S +EYAR +FDQI Q +Y WN++I+
Sbjct: 19 KELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIK 78
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + + + ++ ++ + P+ FT PFV+K + GQ++H FE
Sbjct: 79 GYCNGGDKFGALFMYEEM-QRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFE 137
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ S+ L++ Y CGDL VF I K +VV+W S+I+GFV ++A+ L+++M
Sbjct: 138 LDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDM 197
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
E E V+P+E+TM L+A A+ RD+ G V + + G
Sbjct: 198 ENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLG 236
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 18/211 (8%)
Query: 38 QLKRIHAQMLSTD----FFFDPYSASKLFTPCALSTF-------SSLEYARKMFDQIPQP 86
+ + IH L D FDP+ + F + L AR +FD++PQ
Sbjct: 218 RCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQR 277
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
NL WN++I AYS ++ +F+ + + + PN+ T VI A G+++
Sbjct: 278 NLVVWNSMISAYSQYGRGAEALRLFVDMEM-AGFVPNKATFLSVISACTHMGFRSTGRSL 336
Query: 147 HGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
H F + + I +L+ YA GD A +F + KKDV++W +MISG G
Sbjct: 337 HARALRASFHEFVAIGTALMDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKG 396
Query: 202 EKAIELYREMEVE-NVKPDEVTMVVVLSACA 231
++A+ ++R ME E V PD++T + VL AC+
Sbjct: 397 KEALNVFRRMEEEAEVAPDQITYIAVLWACS 427
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 21/206 (10%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS---LEYARKMFDQIPQPNLYTWNTLIR 96
+ +H +++ T F D Y++S C L+ + S L K+F+ IP+ N+ W +LI
Sbjct: 125 QSVHNRIVKTGFELDVYTSS-----CLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIA 179
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---- 152
+ ++D+P ++ +F + N PNE T+ + AAAR G+ +H
Sbjct: 180 GFVNNDQPKEALRLFKDM-ENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFD 238
Query: 153 --------DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+++++ +++ YA CG L A +F + ++++V WNSMIS + + G +A
Sbjct: 239 PFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEA 298
Query: 205 IELYREMEVENVKPDEVTMVVVLSAC 230
+ L+ +ME+ P++ T + V+SAC
Sbjct: 299 LRLFVDMEMAGFVPNKATFLSVISAC 324
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 144 QAIHGMFEDDLVISN-----SLIHFYA--VCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
+ IH + V+ N LI F A GD+ A VF I ++ V WNSMI G+
Sbjct: 22 KQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYC 81
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
GG A+ +Y EM+ + PD T VL C+ L +G V + I K G ++D+
Sbjct: 82 NGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDV 140
>gi|255555919|ref|XP_002518995.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
gi|223541982|gb|EEF43528.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
Length = 1203
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 7/230 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N ++ ++ HAQ+L FF +P+ AS L CALS + S++YA +F QI QP + +NT+
Sbjct: 904 NMEEFRQAHAQILKWGFFSNPFCASNLVATCALSHWGSMDYACSIFRQIDQPGSFEYNTM 963
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
I+ Y S + + +++ +++ N FT P +IKA A IHG
Sbjct: 964 IKGYVSDFKMENALLLYYEMLEKEVQSDN-FTYPALIKACAWLRAIDESMQIHGHIFKLG 1022
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
FE+DL + NSLI+ Y CG + ++ VF I KD+ SW+S+I+ G + + ++ +
Sbjct: 1023 FEEDLYVQNSLINMYGKCGKIELSCDVFKQIEHKDIASWSSIIAAHSSLGLWSECVQFFE 1082
Query: 210 EM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
EM + + +P+E +V VLSAC+ L+ G + + +N ++++T +
Sbjct: 1083 EMIQDRSYRPEESLLVSVLSACSHLGALDLGRCLHGVLLRNFSELNVTVQ 1132
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 7/190 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IH + F D Y + L +E + +F QI ++ +W+++I A+SS
Sbjct: 1013 QIHGHIFKLGFEEDLYVQNSLIN--MYGKCGKIELSCDVFKQIEHKDIASWSSIIAAHSS 1070
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLV 155
+ F +++ + Y P E L V+ A + +G+ +HG+ E ++
Sbjct: 1071 LGLWSECVQFFEEMIQDRSYRPEESLLVSVLSACSHLGALDLGRCLHGVLLRNFSELNVT 1130
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ SLI Y CG + +C+F + KK+ S++ MISG G +A+E++ EM E
Sbjct: 1131 VQTSLIDMYINCGCIEKGFCLFQRMSKKNHFSYSVMISGLAMHGRSMEALEVFSEMLDEG 1190
Query: 216 VKPDEVTMVV 225
++PD+V VV
Sbjct: 1191 LQPDDVVYVV 1200
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 136/248 (54%), Gaps = 23/248 (9%)
Query: 12 PRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLST---DFFFDPYSASKLFTPCALS 68
P PNP L +R +L +I A + + D F+ +KL C S
Sbjct: 29 PNPPNPILLISKCNSER---------ELMQIQAYAIKSHQEDVSFN----TKLINFCTES 75
Query: 69 -TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
T SS+ YAR +FD + +P++ +N++ R YS S P++ F +F++++ + P+ +T
Sbjct: 76 PTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDD-LLPDNYTF 134
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
P ++KA A G+ +H + +D++ + +LI+ Y C D+ A CVF I +
Sbjct: 135 PSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVE 194
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
VV +N+MI+G+ +A+ L+REM+ +N+KP+E+T++ VLS+CA L+ G W+
Sbjct: 195 PCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWI 254
Query: 243 SSHIEKNG 250
+ +K+G
Sbjct: 255 HEYAKKHG 262
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 105/212 (49%), Gaps = 11/212 (5%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L +QL + ++ D + + ++T C ++ AR +FD+I +P + +N
Sbjct: 147 LEEGRQLHCLSMKLGVDDNVYVCPTLINMYTEC-----EDVDAARCVFDRIVEPCVVCYN 201
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+I Y+ + P ++ +F ++ PNE TL V+ + A +G+ IH
Sbjct: 202 AMITGYARRNRPNEALSLFREM-QGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKK 260
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F + ++ +LI +A CG L A +F + KD +W++MI + G E ++ +
Sbjct: 261 HGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLM 320
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ M ENV+PDE+T + +L+AC+ +E G
Sbjct: 321 FERMRSENVQPDEITFLGLLNACSHTGLVEEG 352
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 136/255 (53%), Gaps = 40/255 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q+K+ HAQ+++T P SA+KL L+ +SL YA K+FDQIPQP+L+ +NT+I+
Sbjct: 30 QQIKQTHAQLITTALISHPVSANKLLK---LAACASLSYAHKLFDQIPQPDLFIYNTMIK 86
Query: 97 AYSSSDEPIQ-SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ----------- 144
A+S S S ++F L + FPN ++ F A + + G+
Sbjct: 87 AHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGL 146
Query: 145 --------AIHGMF-----------------EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
A+ GM+ + DL N+LI Y G++++A +F
Sbjct: 147 ENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDG 206
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++DVVSW+++I+G+V+ G F +A++ + +M KP+E T+V L+AC+ L+ G
Sbjct: 207 MRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQG 266
Query: 240 IWVSSHIEKNGIKMD 254
W+ ++I K IKM+
Sbjct: 267 KWIHAYIGKGEIKMN 281
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 19/218 (8%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D YS + L S SL A+++FD + + ++ +W+T+I Y +++ F +
Sbjct: 180 DLYSWNTLIAAYVGSGNMSL--AKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHK 237
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCG 168
++ P PNE+TL + A + V G+ IH + N S+I YA CG
Sbjct: 238 MLQIGPK-PNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCG 296
Query: 169 DLAMAYCVFVMIG-KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
++ A VF K+ V WN+MI GF G +AI ++ +M+VE + P++VT + +L
Sbjct: 297 EIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALL 356
Query: 228 SACA-----KKRDLEFGIWVSSH-----IEKNGIKMDL 255
+AC+ ++ L F + VS + IE G +DL
Sbjct: 357 NACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDL 394
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 126/227 (55%), Gaps = 13/227 (5%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N +LK+IHA ++ + +K+ C + + EYA +F + PN + +N +
Sbjct: 71 NIVELKKIHAHIVKFSLSQSSFLVTKMVDVC--NHYGETEYANLLFKGVADPNAFLYNAM 128
Query: 95 IRAYSSSDEPIQSFMIFLQLVYN----SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
IRAY + + + ++ Q++ N +P FP++FT PFV+K+ A + + +G+ +HG
Sbjct: 129 IRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHV 188
Query: 151 -----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD--VVSWNSMISGFVEGGFFEK 203
+ + V+ NSL+ Y C L A+ VF + ++D + SW +++SG+ G +
Sbjct: 189 FKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYAD 248
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
A+E +R M++ ++PDE+++V VL CA+ LE G W+ + +K G
Sbjct: 249 ALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAG 295
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 94/178 (52%), Gaps = 12/178 (6%)
Query: 72 SLEYARKMFDQIPQPN--LYTWNTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTL 127
SL+ A ++F+++ + + +++W ++ Y+ + F +Q+V P+E +L
Sbjct: 212 SLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMV---GIEPDEISL 268
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A+ +G+ IH F ++ + N+LI YA CG + +F + +
Sbjct: 269 VSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKE 328
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+DV+SW++MI G G +AIEL++EM+ ++P +T V +L+ACA L G+
Sbjct: 329 RDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGL 386
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 135/254 (53%), Gaps = 40/254 (15%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q+K+ HA +++T P A+K AL+ SL YA K+FDQIPQP+L+ +NT+I++
Sbjct: 194 QIKQTHANLITTAQITLPVIANKFLKNVALA---SLTYAHKLFDQIPQPDLFIYNTMIKS 250
Query: 98 YSSSDEP-IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ------------ 144
+S S + S +F L+ +S YFPN ++ F A + R G+
Sbjct: 251 HSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGLD 310
Query: 145 -------AIHGMF------ED-----------DLVISNSLIHFYAVCGDLAMAYCVFVMI 180
A+ GMF ED D N++I Y G++ +A +F +
Sbjct: 311 GNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEM 370
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++DVVSW+++I+G+V+ G F +A++ + +M VKP+E TMV L+AC+ L+ G
Sbjct: 371 HERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGK 430
Query: 241 WVSSHIEKNGIKMD 254
W+ +I ++ IKM+
Sbjct: 431 WIHVYIRRDNIKMN 444
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 90/162 (55%), Gaps = 7/162 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+++FD++ + ++ +W+T+I Y +++ F +++ S PNE+T+ + A +
Sbjct: 363 AKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKML-QSEVKPNEYTMVSALAACS 421
Query: 136 RPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVF-VMIGKKDVVSWN 189
V G+ IH D + N SLI YA CG++ A VF K+ V WN
Sbjct: 422 NLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWN 481
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+MI GF G E+AI ++ +M+VE V P++VT + +L+AC+
Sbjct: 482 AMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACS 523
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 120/219 (54%), Gaps = 14/219 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLY 89
++ QLK++HA L T + P + LF + S+FS + YA ++FD I + +
Sbjct: 36 SDMSQLKQLHAFTLRTTY---PEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSF 92
Query: 90 TWNTLIRAYSSS-DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
WNTLIRA + ++FM++ +++ P++ T PFV+KA A F G+ +H
Sbjct: 93 MWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHC 152
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
F D+ ++N LIH Y CG L +A VF + ++ +VSWNSMI V G ++
Sbjct: 153 QIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDS 212
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
A++L+REM+ + +PD TM VLSACA L G W
Sbjct: 213 ALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWA 250
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 14/204 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H Q++ F D Y + L + L+ ARK+FD++P+ +L +WN++I A
Sbjct: 148 KQVHCQIVKHGFGGDVYVNNGLIH--LYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 205
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--------E 151
E + +F ++ + P+ +T+ V+ A A +G H
Sbjct: 206 RFGEYDSALQLFREM--QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 263
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+++ NSLI Y CG L MA VF + K+D+ SWN+MI GF G E+A+ + M
Sbjct: 264 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 323
Query: 212 --EVENVKPDEVTMVVVLSACAKK 233
+ ENV+P+ VT V +L AC +
Sbjct: 324 VDKRENVRPNSVTFVGLLIACNHR 347
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 135/244 (55%), Gaps = 13/244 (5%)
Query: 24 NGHQRHPHFLTN----QKQLKRIHAQMLSTDFFFDPYSASKLF-TPCALSTFSSLEYARK 78
N H R ++L N L RIHA +++ + ++KL T C L+ +++YARK
Sbjct: 26 NYHSRSFNYLLNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAP--TMDYARK 83
Query: 79 MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138
MFDQ+P+ +++ WNTLIR Y+ + P + + ++ + FP+ +T PFV+++ A
Sbjct: 84 MFDQMPKRDVFLWNTLIRGYADAG-PCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLS 142
Query: 139 QFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
R G+ +H F+ D+ + +SL+ Y+ G+ VF + +++VSW ++I+
Sbjct: 143 ALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIA 202
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
G+V+ +F++ + ++REM +P+ VT+V VL ACA L G + + K G+
Sbjct: 203 GYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDP 262
Query: 254 DLTF 257
D++
Sbjct: 263 DVSL 266
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 10/208 (4%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKM-FDQIPQP 86
R L+ ++ K +H ++ F D + S L A+ + S ++ F ++
Sbjct: 136 RSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLV---AMYSQSGETLGMELVFGEMVVR 192
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
N+ +W +I Y + + +F ++V S PN TL V+ A A +G+ I
Sbjct: 193 NIVSWTAVIAGYVQNRYFKEGLGVFREMV-GSGTQPNAVTLVSVLPACAGLEFLNLGKLI 251
Query: 147 HGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
HG + D+ ++N+LI Y CG++ A +F + +++VSWN+MI+ + +
Sbjct: 252 HGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAG 311
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSA 229
A++L+R M+ E V D +TMV V+SA
Sbjct: 312 ANAVKLFRRMQAEKVDFDYITMVSVISA 339
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 38/169 (22%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++E AR +FD + NL +WN +I AY ++ + +F ++
Sbjct: 278 GNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRM---------------- 321
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
A V F D + S+I Y +A VF + + VVSW S
Sbjct: 322 ---QAEKVDF------------DYITMVSVISAY-------LAREVFERLPCRSVVSWTS 359
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
MI G E A++L+ M+ E VKP+ T V +AC +E G
Sbjct: 360 MIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEG 408
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 135/244 (55%), Gaps = 13/244 (5%)
Query: 24 NGHQRHPHFLTN----QKQLKRIHAQMLSTDFFFDPYSASKLF-TPCALSTFSSLEYARK 78
N H R ++L N L RIHA +++ + ++KL T C L+ +++YARK
Sbjct: 26 NYHSRSFNYLLNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAP--TMDYARK 83
Query: 79 MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138
MFDQ+P+ +++ WNTLIR Y+ + P + + ++ + FP+ +T PFV+++ A
Sbjct: 84 MFDQMPKRDVFLWNTLIRGYADAG-PCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLS 142
Query: 139 QFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
R G+ +H F+ D+ + +SL+ Y+ G+ VF + +++VSW ++I+
Sbjct: 143 ALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIA 202
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
G+V+ +F++ + ++REM +P+ VT+V VL ACA L G + + K G+
Sbjct: 203 GYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDP 262
Query: 254 DLTF 257
D++
Sbjct: 263 DVSL 266
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 119/236 (50%), Gaps = 10/236 (4%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKM-FDQIPQP 86
R L+ ++ K +H ++ F D + S L A+ + S ++ F ++
Sbjct: 136 RSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLV---AMYSQSGETLGMELVFGEMVVR 192
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
N+ +W +I Y + + +F ++V S PN TL V+ A A +G+ I
Sbjct: 193 NIVSWTAVIAGYVQNRYFKEGLGVFREMV-GSGTQPNAVTLVSVLPACAGLEFLNLGKLI 251
Query: 147 HGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
HG + D+ ++N+LI Y CG++ A +F + +++VSWN+MI+ + +
Sbjct: 252 HGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAG 311
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
A++L+R M+ E V D +TMV V+SACA L G W+ +++ G++++++
Sbjct: 312 ANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSI 367
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++E AR +FD + NL +WN +I AY ++ + +F ++ F + T+ V
Sbjct: 278 GNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDF-DYITMVSV 336
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I A A G+ +H + E ++ I+N+LI YA CG++ +A VF + + V
Sbjct: 337 ISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSV 396
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
VSW SMI G E A++L+ M+ E VKP+ T V +AC +E G
Sbjct: 397 VSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEG 450
>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Glycine max]
Length = 611
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 126/247 (51%), Gaps = 25/247 (10%)
Query: 23 NNGHQRHPHFLT-----NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE--- 74
NN Q H L QLK+IHAQ L T P +A L+T L +SSL
Sbjct: 17 NNQSQHLIHLLNEPTTITMPQLKQIHAQTLRTVNSNHP-NAIFLYTN-ILQHYSSLTQPN 74
Query: 75 --YARKMFDQIPQPNLYTWNTLIRAYSSS------DEPIQSFMIFLQLVYNSPYFPNEFT 126
YA ++F P PN + WNTLIR Y+ S + ++ + + + + P+ T
Sbjct: 75 LTYATRVFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTA-VPDNHT 133
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
P V+KA A G+ +H FE D I NSL+HFYA CG L +A +F +
Sbjct: 134 FPIVLKACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMS 193
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+++ VSWN MI + +GG F+ A+ ++ EM+ + PD TM V+SACA L G+W
Sbjct: 194 ERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVH-DPDGYTMQSVISACAGLGALSLGLW 252
Query: 242 VSSHIEK 248
V ++I K
Sbjct: 253 VHAYILK 259
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 17/212 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++HA +L F D Y + L +T L+ A KMF ++ + N +WN +I +Y+
Sbjct: 151 KQVHAHVLKHGFESDTYICNSLVH--FYATCGCLDLAEKMFYKMSERNEVSWNIMIDSYA 208
Query: 100 SSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-------- 149
+ +F +Q V++ P+ +T+ VI A A +G +H
Sbjct: 209 KGGIFDTALRMFGEMQRVHD----PDGYTMQSVISACAGLGALSLGLWVHAYILKKCDKN 264
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY- 208
DD++++ L+ Y G+L +A VF + +D+ +WNSMI G G + A+ Y
Sbjct: 265 MVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYV 324
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
R ++VE + P+ +T V VLSAC + ++ GI
Sbjct: 325 RMVKVEKIVPNSITFVGVLSACNHRGMVDEGI 356
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE A+++F+ + +L WN++I + E + ++++V PN T V
Sbjct: 283 GELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRMVKVEKIVPNSITFVGV 342
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A GM ++ +V + + Y V L C
Sbjct: 343 LSACNH----------RGMVDEGIVHFDMMTKEYNVEPRLEHYGC--------------- 377
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
++ F G +A+ L EM ++KPD V +L AC K+
Sbjct: 378 LVDLFARAGRINEALNLVSEM---SIKPDAVIWRSLLDACCKQ 417
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 188 WNSMISGFVEG---GFFEKAIELYREM---EVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
WN++I + KA+ELY+ M E + PD T +VL ACA L G
Sbjct: 93 WNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSLCEGKQ 152
Query: 242 VSSHIEKNGIKMD 254
V +H+ K+G + D
Sbjct: 153 VHAHVLKHGFESD 165
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 127/239 (53%), Gaps = 10/239 (4%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL-STFSSLEYARKMFDQIPQPN 87
H ++ L +H +++ DP A +L T A + + YARK+FD++ QP
Sbjct: 24 HLDACASRANLAELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVFDRMAQPT 83
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR---VGQ 144
WN +IR Y+S P+ + +F + + S P+ +T+ V +++A ++ G
Sbjct: 84 AIVWNCMIRGYNSCHAPMDALELF-RAMRRSGVSPDNYTMAAVAQSSAAFASWKGRATGD 142
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
A+H + F DL + + LI+FY + A VF + ++DVVSW MIS F + G
Sbjct: 143 AVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCG 202
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
++ + EM+ E KP+++T++ +LSAC + R ++ G+WV + +++ GI+ D+
Sbjct: 203 QWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIR 261
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 108/188 (57%), Gaps = 6/188 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A K F +P N +WNTLI + + + ++ +F +++ + P+ TL V+ A
Sbjct: 277 AWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDG-VIPDVITLVSVLSTYA 335
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ + G+ +H +D D+++ NSLI+ YA CGD+A A +F + ++D+VSW +
Sbjct: 336 QLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTA 395
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
M+ G+V+G F A L+ +M+V +V E+ +V +LSAC++ L+ G + S+I++
Sbjct: 396 MVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKS 455
Query: 251 IKMDLTFE 258
++ D+ E
Sbjct: 456 VRTDMWLE 463
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 111/210 (52%), Gaps = 10/210 (4%)
Query: 58 ASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
AS LF L F S+E ARK+F+++ + ++ +W +I A++ + + + L
Sbjct: 154 ASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQ-WDNVLRSLD 212
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG 168
+ + PN+ T+ ++ A + G ++ E D+ I N+LI Y CG
Sbjct: 213 EMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCG 272
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
++ A+ F + ++ SWN++I GFV+ G ++A+ ++ EM + V PD +T+V VLS
Sbjct: 273 CMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLS 332
Query: 229 ACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
A+ DL+ G ++ ++I+ + I D+ +
Sbjct: 333 TYAQLGDLQQGRYLHNYIKDHEIHCDIILQ 362
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 96/212 (45%), Gaps = 18/212 (8%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
G + +L N + IH ++ + + Y+ + A +F+ +
Sbjct: 338 GDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKC-----------GDMAAAEIIFENMA 386
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ ++ +W ++ Y + +F +F + +E L ++ A ++ G+
Sbjct: 387 RRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRD-VMASEMALVSLLSACSQLGALDKGR 445
Query: 145 AIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
IH ++ D+ + ++L+ YA CG + A +F + K ++WN+MI G G
Sbjct: 446 EIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQG 505
Query: 200 FFEKAIELYRE-MEVENVKPDEVTMVVVLSAC 230
++A+ L+ + +++ + KPD +T+ VVL AC
Sbjct: 506 QGKEAVALFEQLLKLRDPKPDAITLKVVLCAC 537
>gi|255536907|ref|XP_002509520.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549419|gb|EEF50907.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 413
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 126/227 (55%), Gaps = 7/227 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T+ QLK+IHAQM+ T D ++AS+L + CALS + YA K+F I PN++ WNT
Sbjct: 60 TSMTQLKQIHAQMILTSRISDHFAASRLLSFCALSNSRDINYAIKLFKSIQDPNIFMWNT 119
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--- 150
+IRA ++S P Q+ ++Q++ PN++T PF++K + + + IH
Sbjct: 120 IIRALANSSNPDQALFFYIQML-RLGVCPNKYTFPFLLKGCSF-CSIQSCKQIHTHVLKF 177
Query: 151 --EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ DL + N L+ Y++ DL A+ +F ++D+ W +MISG+ + +A+ L+
Sbjct: 178 GSDLDLHVVNRLVRVYSIFSDLTDAWKLFGEFPERDLSIWTTMISGYAQNFCANEALVLF 237
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M E +P+ T+ VLS CA+ L+ G + + + G+++ +
Sbjct: 238 ERMVAEGFEPNGPTIASVLSVCARSGSLDLGERIHGFMIERGVEIGV 284
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 108/208 (51%), Gaps = 8/208 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ K+IH +L D + ++L S FS L A K+F + P+ +L W T+I
Sbjct: 165 QSCKQIHTHVLKFGSDLDLHVVNRLVR--VYSIFSDLTDAWKLFGEFPERDLSIWTTMIS 222
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----E 151
Y+ + ++ ++F ++V + PN T+ V+ AR +G+ IHG E
Sbjct: 223 GYAQNFCANEALVLFERMVAEG-FEPNGPTIASVLSVCARSGSLDLGERIHGFMIERGVE 281
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+++ +L+H YA G + +A +F + +K+V +WN+M+ G G E+A+ L+ ++
Sbjct: 282 IGVILGTALVHMYAKNGKILVARKLFDSMTEKNVATWNAMLCGLASHGHAEEALSLFWKL 341
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
E E++ P + T V VLSAC ++ G
Sbjct: 342 EKEHIVPIDATFVGVLSACCHAGLIDVG 369
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 38/237 (16%)
Query: 56 YSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
Y+ S+L C LS F L YA +F+ I +PNL WNT+ R ++ + + + + +++ +
Sbjct: 5 YALSQLLEFCVLSPHFDGLPYAISVFETIEEPNLLIWNTMFRGHALNSDSVSALKLYVCM 64
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGD 169
+ + PN ++ PF++K+ A+ FR GQ IHG ++ D+ + SLI YA G
Sbjct: 65 I-SLGLLPNSYSFPFLLKSCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGR 123
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGF----------------------------- 200
L A+ VF + VVS+ ++I+G+ G+
Sbjct: 124 LEDAHKVFDRSSHRHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVET 183
Query: 201 --FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+++A+ELY+EM NVKPDE TMV V+SACA+ ++E G V S IE +G +L
Sbjct: 184 FNYKEALELYKEMVKTNVKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNL 240
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 114/205 (55%), Gaps = 10/205 (4%)
Query: 53 FDPYSASKLFTPCALST-FSSLEY---ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSF 108
FD S + + AL T ++S Y ARK+FD+I ++ +WN +I Y + ++
Sbjct: 131 FDRSSHRHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEAL 190
Query: 109 MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHF 163
++ ++V + P+E T+ V+ A A+ +G+ +H + ED +L + N+L+
Sbjct: 191 ELYKEMV-KTNVKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDM 249
Query: 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
Y+ CG++ A +F + KD +SWN++I G +++A+ L++EM P++VTM
Sbjct: 250 YSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTM 309
Query: 224 VVVLSACAKKRDLEFGIWVSSHIEK 248
+ VLSACA ++ G W+ +I+K
Sbjct: 310 LSVLSACAHLGAIDIGRWIHVYIDK 334
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +E A ++F + + +WNTLI ++ + ++ +F +++ S PN+ T+
Sbjct: 251 SKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEML-RSGESPNDVTM 309
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMAYCVFVMI 180
V+ A A +G+ IH + L + SLI YA CGD+ A VF +
Sbjct: 310 LSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSM 369
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ + SWN+MI GF G A +L+ +M ++PD++T V +LSAC+ L+ G
Sbjct: 370 LARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIEPDDITFVGLLSACSHSGMLDLG 428
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 126/258 (48%), Gaps = 39/258 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T LK IHA ++ FD ++AS L + L+YA ++F QI PNL+ +N+
Sbjct: 26 TTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNL--LDYAAQVFYQIQNPNLFIYNS 83
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
IR +S S +P +SF ++Q N P+ T PF++KA + +G HG
Sbjct: 84 FIRGFSGSKDPDKSFHFYVQSKRNG-LVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRH 142
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG--------- 199
F+ D+ + NSL+ Y+ GD+ A VF I DVVSW SM++G+++ G
Sbjct: 143 GFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLF 202
Query: 200 ----------------------FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
FF+KAIELY ++ E V +E MV V+++CA LE
Sbjct: 203 DKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALE 262
Query: 238 FGIWVSSHIEKNGIKMDL 255
G +I +N + ++L
Sbjct: 263 LGERAHDYILRNKMTVNL 280
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 12/173 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
ARK+FD++P+ NL TW+ +I Y+ + D+ I+ + L+ + NE + VI
Sbjct: 198 ARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYF----LLQSEGVHANETVMVSVIA 253
Query: 133 AAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ A +G+ H +L++ +L+ YA CG + A VF + +D +S
Sbjct: 254 SCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALS 313
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
W ++I+GF G+ EKA+E + ME + P E+T VLSAC+ +E G+
Sbjct: 314 WTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGL 366
>gi|255641766|gb|ACU21153.1| unknown [Glycine max]
Length = 529
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 129/225 (57%), Gaps = 12/225 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+K+ HAQ++ DP+ A++L S FS+L++ARK+FD + +P+++ N +I+
Sbjct: 35 NVKKAHAQVVVRGHEQDPFIAARLIDK--YSHFSNLDHARKVFDNLSEPDVFCCNVVIKV 92
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFE 151
Y+++D ++ + + + PN +T PFV+KA + G+ IH GM +
Sbjct: 93 YANADPFGEALKVHDAMRWRG-ITPNYYTYPFVLKACGAEGASKKGRVIHEHAVKCGM-D 150
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL + N+L+ FYA C D+ ++ VF I +D+VSWNSM+SG+ G+ + AI L+ +M
Sbjct: 151 LDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMVSGYTVNGYVDDAILLFYDM 210
Query: 212 -EVENV-KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E+V PD T V VL A A+ D+ G W+ +I K + +D
Sbjct: 211 LRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLD 255
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 16/225 (7%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWN 92
K+ + IH + D LF AL F +E +RK+FD+IP ++ +WN
Sbjct: 135 KKGRVIHEHAVKCGMDLD------LFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWN 188
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYN-SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
+++ Y+ + + ++F ++ + S P+ T V+ A A+ G IH
Sbjct: 189 SMVSGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIV 248
Query: 152 D-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
D + LI Y+ CG + MA +F I + V+ W+++I + G ++A+
Sbjct: 249 KTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALA 308
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
L+R++ ++PD V + +LSAC+ LE G + + +E G+
Sbjct: 309 LFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGV 353
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%)
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E D I+ LI Y+ +L A VF + + DV N +I + F +A++++
Sbjct: 49 EQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVHDA 108
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M + P+ T VL AC + + G + H K G+ +DL
Sbjct: 109 MRWRGITPNYYTYPFVLKACGAEGASKKGRVIHEHAVKCGMDLDL 153
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 128/260 (49%), Gaps = 47/260 (18%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+LK+IHA L +K+ A+S L YA+++FDQ+P PN + +NTLIR
Sbjct: 10 RLKQIHAHSLLAGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTLIRG 69
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ---------AIHG 148
Y+ S P S + Q+ N P+EFT F+IKA +R V+ + + IHG
Sbjct: 70 YAKSSIPSYSLHLVNQMRQNG-VDPDEFTFNFLIKARSR-VRVNINRNLPLVVECDEIHG 127
Query: 149 M-----FEDDLVISNSLIHFYAV-------------------------------CGDLAM 172
F L + N+LIH YA G+L
Sbjct: 128 AVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRAGELER 187
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
A VF + ++DVVSW +M+S + + + +A+ELY M + V+PDEVT+V V+SAC
Sbjct: 188 ARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACTN 247
Query: 233 KRDLEFGIWVSSHIEKNGIK 252
DL+ G V S+I++NG +
Sbjct: 248 LGDLQMGYSVHSYIDENGFR 267
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 90/164 (54%), Gaps = 6/164 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE AR +FDQ+P+ ++ +W T++ AYS + ++ +++ ++ + P+E TL VI
Sbjct: 185 LERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTML-DKGVRPDEVTLVSVIS 243
Query: 133 AAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A ++G ++H +++ + + N+LI YA CG + A+ VF + +K +V+
Sbjct: 244 ACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSLVT 303
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
WNSMIS E A L+ M V PD VT + VL+A A
Sbjct: 304 WNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYA 347
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 133/241 (55%), Gaps = 18/241 (7%)
Query: 26 HQRHPHFLT---------NQKQLKRIHAQMLSTDFFFDPYS--ASKLFTPCALSTFSSLE 74
H +PH L+ + K LK+IHA ++ T D +++L CA S
Sbjct: 16 HDFNPHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPR 75
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSD-EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
YA + Q+ PNL +N +IR ++S+ + I+ +++ Q++ + P+ +T+PFV+KA
Sbjct: 76 YALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQML-SKGIVPDNYTIPFVLKA 134
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A R G+ +HG D+ +SN+L+ YAVC + A VF ++D+VSW
Sbjct: 135 CAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSW 194
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+MI G+V+ GF + + L+ EM EN++ D +T+V+VLS+CA+ DL G + +I +
Sbjct: 195 TTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIR 254
Query: 249 N 249
N
Sbjct: 255 N 255
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 9/224 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ + +H Q + D Y ++ L A+ + ARK+FD PQ +L +W T+I+
Sbjct: 142 REGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDV--IRSARKVFDTSPQRDLVSWTTMIQ 199
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMF 150
Y + +F ++ + TL V+ + AR R+G+ +H
Sbjct: 200 GYVKMGFAREGVGLFFEMC-GENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNV 258
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D+ + N+L+ Y CGD A VF + K+VVSWNSMISG + G F++++ ++R+
Sbjct: 259 NLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRK 318
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
M+ VKPD+VT+V VL++CA LE G WV +++++N I+ D
Sbjct: 319 MQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRAD 362
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 6/162 (3%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
+ARK+F ++P N+ +WN++I + + +S +F ++ P++ TL V+ +
Sbjct: 280 FARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKM-QRLGVKPDDVTLVAVLNSC 338
Query: 135 ARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A +G+ +H + + + I N+L+ YA CG + A VF + +KDV S+
Sbjct: 339 ANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYT 398
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+MI G G KA++L+ EM ++PDEVT V VL+AC+
Sbjct: 399 AMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACS 440
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 137/286 (47%), Gaps = 49/286 (17%)
Query: 18 TTLTVNNGHQRHPHFLTNQK-----QLKRIHAQMLSTDFFFDPYSASKLFTPCAL---ST 69
+ + +N +HP Q LK IH +L T D + AS+L ST
Sbjct: 2 SNIVLNTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDST 61
Query: 70 FSS----LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
F L YA +F QI PNL+ +N LIR +S+ EP ++F + Q++ S +P+
Sbjct: 62 FHKPTNLLGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQML-KSRIWPDNI 120
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T PF+IKA+ VG+ H F++D+ + NSL+H YA CG +A A +F +
Sbjct: 121 TFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQM 180
Query: 181 GKKDVVSWNSMISGFVEGGF-------------------------------FEKAIELYR 209
+DVVSW SM++G+ + G FEKAI+L+
Sbjct: 181 PFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFE 240
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M+ E V +E MV V+S+CA LEFG ++ K+ + ++L
Sbjct: 241 LMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNL 286
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 94/182 (51%), Gaps = 6/182 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E AR+MFD++P NL+TW+ +I Y+ ++ ++ +F +L+ NE + VI
Sbjct: 201 VEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF-ELMKREGVVANETVMVSVIS 259
Query: 133 AAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ A G+ H +L++ +L+ Y CG++ A VF + KD +S
Sbjct: 260 SCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLS 319
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W+S+I G G KAI + +M P ++T+ VLSAC+ ++ G+ + +++
Sbjct: 320 WSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMK 379
Query: 248 KN 249
++
Sbjct: 380 RD 381
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 9/224 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTLIRA 97
+ IH+ L D + + L + A S+ ++E AR +FD +P ++ +WN++I
Sbjct: 147 REIHSSTLKLGVHLDVFVQNALIS--AFSSCGAVEAARAVFDMLPALVRDVVSWNSMISG 204
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED----- 152
Y S + +F +L+ + P+E TL + R +G+ IHG+F
Sbjct: 205 YLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVL 264
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + +SLI Y+ CG + A VF I ++ V W SMI+G+ + F++AIEL+REM+
Sbjct: 265 DVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQ 324
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ D T+ VLSAC L G W+ + E+N I+MDL
Sbjct: 325 IGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLN 368
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 129/231 (55%), Gaps = 10/231 (4%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L++ + +I + +++ F DP +SKL +LS ++R +F QI +PN+++WN
Sbjct: 38 LSHPRSFNQILSHAIASGVFRDPVVSSKLLYY-SLSHDHDFAFSRTLFFQIHKPNVFSWN 96
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+ RAYS S P ++ ++ L+ + P+ ++ PFV+KA AR G+ IH
Sbjct: 97 FMFRAYSRSSFPAETIALY-NLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLK 155
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--KDVVSWNSMISGFVEGGFFEKAI 205
D+ + N+LI ++ CG + A VF M+ +DVVSWNSMISG+++ +E A+
Sbjct: 156 LGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELAL 215
Query: 206 ELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+++ E+ + ++ PDEVT+V LS C + L+ G + +G +D+
Sbjct: 216 KVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDV 266
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 9/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH + F D + S L S +E ARK+FD+IP N W ++I Y+
Sbjct: 251 KKIHGLFTGSGFVLDVFVGSSLID--MYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYA 308
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
SD ++ +F ++ + + T+ V+ A G+ IH E DL
Sbjct: 309 QSDLFKEAIELFREMQIGG-FAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDL 367
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME-V 213
N+LI Y+ CGD+ A +F + + D+ SW+++ISG G +KA+ L+ +ME +
Sbjct: 368 NARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMI 427
Query: 214 ENVKPDEVTMVVVLSAC 230
+++P+E+T + VL AC
Sbjct: 428 SDIRPNEITFLGVLCAC 444
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 19/235 (8%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLF-----TPCALSTFS---SLEYARKMFDQIPQPNL 88
+ L ++HA +L+ P + + + + CALS + +L +AR+MFD++P P+
Sbjct: 17 RHLDQLHAHLLA----HGPSAVASVVPQLVASYCALSGRAGDVALCHARRMFDRVPDPDR 72
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+ +N+LIRAYS+S P Q + + V PNEFTLPFV+KA +R A HG
Sbjct: 73 FAYNSLIRAYSNSGCP-QEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHALATHG 131
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFV-MIGKKDVVSWNSMISGFVEGGFFE 202
+ + + + N+L+H A G L + +F M ++VVSWN+MI G + G
Sbjct: 132 VAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETS 191
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+A L+REM + V D T V +L C+K+ +LE G V H+ +G ++DL
Sbjct: 192 EACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLIL 246
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
CAL+ S++ AR F+Q+P+ N+ +WN +I Y ++ ++ ++ + P+E
Sbjct: 283 CALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRM-KSLGLTPDE 341
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVM 179
TL V+ + G+ IH +D + + NSLI YA CG + + +F
Sbjct: 342 VTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTE 401
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ K+ +SWN +I G ++A+ +R M + PDE+T V +LSAC+ LE G
Sbjct: 402 MPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDG 461
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 38/219 (17%)
Query: 68 STFSSLEYARKMFDQI-PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
++ SL +R++F ++ P N+ +WNT+I + + E ++ +F ++ + FT
Sbjct: 153 ASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREM-RRQGVLADVFT 211
Query: 127 LPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
++ ++ VG+ +H DL++ N+L+ Y CGDL MA+ F ++
Sbjct: 212 FVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMP 271
Query: 182 KKDVVSW-------------------------------NSMISGFVEGGFFEKAIELYRE 210
K+VVSW N+MIS +V+GG F + + LY
Sbjct: 272 IKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNR 331
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
M+ + PDEVT+ VLS + DL G + +I+ +
Sbjct: 332 MKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDS 370
>gi|297739162|emb|CBI28813.3| unnamed protein product [Vitis vinifera]
Length = 500
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 120/206 (58%), Gaps = 6/206 (2%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN 87
RH K L +IHAQ ++T F D + AS++ + ALS S+ YAR +F +I +P+
Sbjct: 76 RHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPD 135
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
++ NTLIRAY+ S PI + + + ++ +S FP+ T P ++KA + R+G+AIH
Sbjct: 136 IFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIH 195
Query: 148 GM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-KDVVSWNSMISGFVEGGFF 201
+ ++ +SN L+ YA CG + A VF + DVVSW+ MI+G+V+ F
Sbjct: 196 SHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDDVVSWSVMINGYVQESRF 255
Query: 202 EKAIELYREMEVENVKPDEVTMVVVL 227
++ + L+++M E ++P+E +V L
Sbjct: 256 KEGLGLFQDMMGEKIEPNESVLVNAL 281
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 24/187 (12%)
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS 118
+++ C L +E A +FD+ P+ ++ +W+ +I Y + +F Q +
Sbjct: 215 QMYASCGL-----IESAGLVFDRTPECDDVVSWSVMINGYVQESRFKEGLGLF-QDMMGE 268
Query: 119 PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFV 178
PNE L +K V R+G A LI Y+ CG + A VF
Sbjct: 269 KIEPNESVLVNALKNVRLTV--RLGTA--------------LIDMYSKCGSVERALEVFH 312
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+ +K+V++W++MI+G G + A+ L+ +ME++ VKP+EVT + +L+AC+ + ++
Sbjct: 313 KMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDE 372
Query: 239 GIWVSSH 245
G W + H
Sbjct: 373 G-WDTIH 378
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 148 GMFEDDLVISNSLIHFYAVC--GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
G+F D+ V S ++ F A+ G + A +F I K D+ N++I + A+
Sbjct: 98 GIFSDNFVASR-ILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAV 156
Query: 206 ELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
Y EM E V PD T ++L AC++ L G + SH+ K G
Sbjct: 157 VFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLG 202
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 135/265 (50%), Gaps = 49/265 (18%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++++++HA L T F P+ +S+L + + L YAR +FD+I + +L WNT+I+
Sbjct: 30 QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 89
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + ++F +LV+ Y P+ FTLP VIK AR + G+ IHG+ F
Sbjct: 90 CYVENQFSHDGIVLFHELVHE--YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 147
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV-----------VSWNSMISGFVEGGF 200
D+ + SL++ Y+ CG++ A VF + KDV VSWN+MI+G+++ G
Sbjct: 148 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGD 207
Query: 201 FEKAIELYREMEVENV-------------------------------KPDEVTMVVVLSA 229
F+ A+EL+ +M + ++ +P T+V VLSA
Sbjct: 208 FDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSA 267
Query: 230 CAKKRDLEFGIWVSSHIEKNGIKMD 254
+ L G W+ S++EKNG ++D
Sbjct: 268 VSGLAVLGKGRWIHSYMEKNGFELD 292
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 8/161 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSF-MIFLQLVYNSPYFPNEFTLPFVIKAA 134
A ++F Q+P +L TWN +I Y + + + + M F+ L S P+ TL V+ A
Sbjct: 211 ALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSR--PSHATLVSVLSAV 268
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ G+ IH FE D ++ SLI YA CG + A VF I KK V W
Sbjct: 269 SGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWT 328
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
++I G G A+ L+ EM +KP+ + + VL+AC
Sbjct: 329 AIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNAC 369
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 134/259 (51%), Gaps = 37/259 (14%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
+ T + L++ HA ++ + + ++AS++ CA S +++YA +F Q+ PNL++W
Sbjct: 33 YCTTMRDLQQFHAHLIKSGQAIESFAASRILAFCA-SPLGNMDYAYLVFLQMQNPNLFSW 91
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
NT+IR +S S P + +F+ ++ +S P T P + KA ++ G +HG
Sbjct: 92 NTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRII 151
Query: 150 ----------------------------------FEDDLVISNSLIHFYAVCGDLAMAYC 175
E D+V NS+I A CG++ +
Sbjct: 152 KLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRK 211
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F + K+ +SWNSMI G+V G F++A++L+ +M+ E ++P E TMV +L+A A+
Sbjct: 212 LFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGA 271
Query: 236 LEFGIWVSSHIEKNGIKMD 254
L G+W+ +I+KN ++++
Sbjct: 272 LRQGVWIHEYIKKNNLQLN 290
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 92/170 (54%), Gaps = 6/170 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L+ ++ +RK+FD++P N +WN++I Y + ++ +F+++ P+EF
Sbjct: 199 GLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKM-QEERIQPSEF 257
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ ++ A+A+ R G IH + + ++ ++I Y CG + A VF I
Sbjct: 258 TMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKI 317
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+ + SWNSMI G G ++AI +++ +E ++KPD ++ + VL+AC
Sbjct: 318 PCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCISFMAVLTAC 367
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 139/286 (48%), Gaps = 48/286 (16%)
Query: 19 TLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEY 75
+LT+ N R N ++LK+ H Q+L + Y ++L C+ S + S Y
Sbjct: 14 SLTLRNTLSRLIEQCKNLRELKKTHTQILKSPTLHTGDQYYLITRLLYVCSFSYYGSFSY 73
Query: 76 ARKMFDQIPQPNLYTWNTLIRAY---SSSDEP--IQSFMIFLQLVYNSPYFPNEFTLPFV 130
A +F I P+L +N +IRAY S D+ ++ M++ Q+ + PN T PF+
Sbjct: 74 ATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQM-FCKDIVPNCLTFPFL 132
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+K + + GQAIH F D+ ++NSLI Y G L+ A VF + DV
Sbjct: 133 LKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLVTDV 192
Query: 186 VSWNSM-------------------------------ISGFVEGGFFEKAIELYREMEV- 213
V+WNSM I+G +GG ++++EL+ EM++
Sbjct: 193 VTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQIL 252
Query: 214 --ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ VKPD++T+ VLSACA+ ++ G WV ++ +NGI+ D+
Sbjct: 253 SDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVI 298
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 13/209 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++ +ML TD + + + C + L+ A +F ++ N+ TWN++I +
Sbjct: 181 RKVFDEMLVTDVV----TWNSMVIGCLRN--GGLDMAMDLFRKMNGRNIITWNSIITGLA 234
Query: 100 SSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----ED 152
+S +F +Q++ + P++ T+ V+ A A+ G+ +HG E
Sbjct: 235 QGGSAKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIEC 294
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+VI +L++ Y CGD+ A+ +F + +KD +W MIS F G KA + EME
Sbjct: 295 DVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEME 354
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIW 241
VKP+ VT V +LSACA +E G W
Sbjct: 355 KAGVKPNHVTFVGLLSACAHSGLVEQGRW 383
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 135/289 (46%), Gaps = 69/289 (23%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS-SLEYARKMFDQIPQPNLYTWN 92
T+ +L + HA +L + ++AS+L + ++ + ++ YA +F +IP PN Y WN
Sbjct: 18 TSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWN 77
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---- 148
T+IRAY++S P + IF Q+++ S P+++T F +K+ G+ IHG
Sbjct: 78 TIIRAYANSPTPEAALTIFHQMLHAS-VLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLK 136
Query: 149 --------------------------------MFEDDLVISNSLIHFYAVCGDLAMAYCV 176
M E D+V N+L+ YA G + +A +
Sbjct: 137 TGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHL 196
Query: 177 F------------------VMIG-------------KKDVVSWNSMISGFVEGGFFEKAI 205
F V +G K+VVSWN+MI+G+ G F + +
Sbjct: 197 FDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVL 256
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
L+ +M+ VKPD T+V VLSACA L G WV ++I+KNGI +D
Sbjct: 257 VLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISID 305
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE AR++F + P N+ +WN +I YS + ++ + + ++ P+ TL V+
Sbjct: 221 LEEARRVFGETPVKNVVSWNAMITGYSHAGR-FSEVLVLFEDMQHAGVKPDNCTLVSVLS 279
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G+ +H + D ++ +L+ Y+ CG + A VF +KD+ +
Sbjct: 280 ACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDIST 339
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
WNS+ISG G + A++++ EM VE KP+EVT V VLSAC++ L+ G
Sbjct: 340 WNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEG 391
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 37/204 (18%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
Q + +HA + D + A+ L ++ C S+E A ++F+ + ++ TWN++
Sbjct: 289 QGEWVHAYIDKNGISIDGFVATALVDMYSKCG-----SIEKALEVFNSCLRKDISTWNSI 343
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL 154
I S+ + IF +++ + PNE T V+ A +R G+ ++
Sbjct: 344 ISGLSTHGSGQHALQIFSEMLVEG-FKPNEVTFVCVLSACSRA----------GLLDEGR 392
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N ++H + + + C+ ++G+ G E+A EL ++M
Sbjct: 393 EMFNLMVHVHGIQPTIEHYGCMVDLLGRV---------------GLLEEAEELVQKMP-- 435
Query: 215 NVKPDEVTMVVVLSACAKKRDLEF 238
K V +L AC ++E
Sbjct: 436 -QKEASVVWESLLGACRNHGNVEL 458
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
A+ +F I + WN++I + E A+ ++ +M +V PD+ T L +C
Sbjct: 61 AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120
Query: 233 KRDLEFGIWVSSHIEKNGIKMDL 255
+E G + H+ K G+ DL
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDL 143
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 11/223 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
R+H ++ + DP S L C + SL YAR +F +IP P+ +NT+IR++S
Sbjct: 6 RLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSR 65
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLV 155
P S F + N N FT PFV+KA +R ++ +H + D+
Sbjct: 66 F-FPSHSLSYFFSMRSNGIPLDN-FTFPFVLKACSR---LQINLHLHSLIVKYGLGSDIF 120
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ N+LI Y CG L MA VF + ++D VSW+++I+ F+ G+ +A++L+ +M++E+
Sbjct: 121 VQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLED 180
Query: 216 -VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
V PDEVTM+ V+SA + DLE G WV + I + G + +
Sbjct: 181 KVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVAL 223
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C SLE A K+FD++ + + +W+T+I ++ ++ ++ +F ++ P+E
Sbjct: 127 CVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDE 186
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
T+ VI A + +G+ + F + + +LI ++ CG + + VF
Sbjct: 187 VTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEK 246
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ ++V++W ++I+G G +A+ ++ M V+PD VT VL AC+
Sbjct: 247 MAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACS 298
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 11/220 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT---WNTL 94
+L ++H ++ F +P +K FT A S ++ YA + + +Y ++T+
Sbjct: 22 KLAQLHTHIIKLGFQNNPLVLTK-FTS-ASSNLDAIPYAMSLVFSVEDARVYDAFLFSTI 79
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
IRAY+ S + + + + L+ PN++ PFV+KA A +G+A+HG
Sbjct: 80 IRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFG 139
Query: 150 FEDDLVISNSLIHFYAVC-GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F+DD+ + N+++H Y C G + A +F + K D V+W +MI G+ G A+ L+
Sbjct: 140 FDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLF 199
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
R+M++ V PD+VTMV VLSAC LE G W+ S+IEK
Sbjct: 200 RKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEK 239
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 104/206 (50%), Gaps = 9/206 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLF-TPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
K +H ++ F D + + + C S +E+ARK+FD++P+ + TW +I Y
Sbjct: 129 KAVHGSLVKFGFDDDIFVQNTMVHMYCCCS--GGMEFARKLFDEMPKLDPVTWTAMIGGY 186
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI-- 156
+ + + +F ++ + P++ T+ V+ A +G+ I E + V+
Sbjct: 187 ARLGQSAGAVGLFRKMQI-AGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKT 245
Query: 157 ---SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
SN+L+ +A CGD+ A +F + K+ +VSW S+I G G +A+ L+ EM+
Sbjct: 246 VELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKA 305
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFG 239
+ P+++ + +LSAC+ +E G
Sbjct: 306 SGMVPEDIAFIGLLSACSHSGLVERG 331
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 115/217 (52%), Gaps = 37/217 (17%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F L YA +F+ I +PNL WNT+ R ++ + + + + +++ ++ + PN ++ PF
Sbjct: 12 FDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMI-SLGLLPNSYSFPF 70
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM----- 179
++K+ A+ GQ IHG ++ D+ ++ SLI YA G L A+ VF
Sbjct: 71 LLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRH 130
Query: 180 --------------------------IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
I KDVVSWN+MISG+VE F++A+ELY++M
Sbjct: 131 VVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMK 190
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
NVKPDE TMV V+SACA+ +E G + S IE +G
Sbjct: 191 TNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHG 227
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 111/205 (54%), Gaps = 10/205 (4%)
Query: 53 FDPYSASKLFTPCALST-FSSLEY---ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSF 108
FD S + + AL T ++S Y ARK+FD+I ++ +WN +I Y + ++
Sbjct: 123 FDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEAL 182
Query: 109 MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHF 163
++ ++ + P+E T+ V+ A A+ +G+ +H ED ++ I N LI
Sbjct: 183 ELYKDMM-KTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDL 241
Query: 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
Y+ CG++ A +F + KKDV+SWN++I G +++A+ L++EM P++VTM
Sbjct: 242 YSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTM 301
Query: 224 VVVLSACAKKRDLEFGIWVSSHIEK 248
+ VL ACA ++ G W+ +I K
Sbjct: 302 LSVLPACAHLGAIDIGRWIHVYINK 326
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C +E A +F + + ++ +WNTLI ++ + ++ ++F +++ S
Sbjct: 241 LYSKCG-----EVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEML-RSGE 294
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMA 173
PN+ T+ V+ A A +G+ IH L + SLI YA CGD+ A
Sbjct: 295 SPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAA 354
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF + + + SWN+MI GF G A +L+ +M + PD++T V +LSAC+
Sbjct: 355 KQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHS 414
Query: 234 RDLEFG 239
L+ G
Sbjct: 415 GMLDLG 420
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 29/169 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E A+++FD + +L +WN +I ++ + +F +F ++ N P++ T +
Sbjct: 349 GDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNG-IDPDDITFVGL 407
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + +G+ I D I+ L H+ C+ ++G
Sbjct: 408 LSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYG----------CMIDLLG--------- 448
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G F++A E+ R M +E PD V +L AC ++E G
Sbjct: 449 ------HCGLFKEAKEMIRTMPME---PDGVIWCSLLKACKMHNNVELG 488
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L+ A +F I + +++ WN+M G A++LY M + P+ + +L +
Sbjct: 15 LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74
Query: 230 CAKKRDLEFGIWVSSHIEKNGIKMDL 255
CAK + L G + H+ K G +D+
Sbjct: 75 CAKSKALIEGQQIHGHVLKLGYDLDM 100
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 11/223 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++ +IH+Q + T + +K+ C + YARK+FD+IPQP+++ WNT+I+
Sbjct: 50 EINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKG 109
Query: 98 YSSSDEPIQSFMIF-LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ------AIHGMF 150
YS + ++ L LV+N P+ FT PF++K + + + G+ IHG
Sbjct: 110 YSRINCSESGVSLYKLMLVHNIK--PDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFL 167
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ +L + IH +++CG + A +F M +VV+WN ++SG+ +E++ L+ E
Sbjct: 168 DSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIE 227
Query: 211 ME--VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
ME E V P+ VT+V++LSAC+K +DL G + + K GI
Sbjct: 228 MEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGI 270
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 43/232 (18%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
LF+ C L + YARK+FD + TWN ++ Y+ +S +F+++
Sbjct: 180 LFSLCGL-----VNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCEC 234
Query: 121 F-PNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMA 173
PN TL ++ A ++ G+ I+ G+ E +L++ N+LI +A CG++ A
Sbjct: 235 VSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAA 294
Query: 174 YCVFVMIGKKDVVSWNSMISGF---------------------------VEGGF----FE 202
VF + +DV+SW S+++GF ++G F+
Sbjct: 295 RGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFK 354
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ + L+R+M++ NVKPDE TMV +L+ACA LE G W ++I+KN IK D
Sbjct: 355 EVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKND 406
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 7/190 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ ARK FDQ+P+ + +W +I Y + + +F + S P+EFT+ ++
Sbjct: 322 IDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQM-SNVKPDEFTMVSILT 380
Query: 133 AAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A +G+ ++D I N+LI Y CG++ A +F + KKD +
Sbjct: 381 ACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFT 440
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI-WVSSHI 246
W +MI G G E+A+ ++ M +V PDE+T + V+ AC + G + S+
Sbjct: 441 WTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMA 500
Query: 247 EKNGIKMDLT 256
++GIK +LT
Sbjct: 501 VQHGIKPNLT 510
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 136/258 (52%), Gaps = 19/258 (7%)
Query: 8 VISIPRHPNPTTLTVN-----NGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLF 62
V+ + + P P +T N +H + + QLK+IHA L + P ++ LF
Sbjct: 2 VLGVIQSPPPQIVTSKPTNHYNLLLQHLNECKDMSQLKQIHALSLRSTL---PNHSTTLF 58
Query: 63 TPCALSTFSSLE---YARKMFDQIPQPNLYTWNTLIRAYSSSDE---PIQSFMIFLQLVY 116
+ FSSL YA ++FDQ+ PN + WN LIRA + S ++ +++ ++
Sbjct: 59 LYSRILHFSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQ 118
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLA 171
S FP+ T PFV+KA A G+ H F+ D+ I+NSLIHFYA CG L
Sbjct: 119 RSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLE 178
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A VF + ++ +VSWN+MI FV G FE A++L+ + + + +PD T+ V++ACA
Sbjct: 179 SAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACA 238
Query: 232 KKRDLEFGIWVSSHIEKN 249
L G+W + + +N
Sbjct: 239 GLCALSLGMWAHAFLLRN 256
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 99/207 (47%), Gaps = 19/207 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+ HA +L F D Y + L + C SLE A+ +FD++PQ +L +WN +I
Sbjct: 146 KQAHAHLLKLGFQSDVYINNSLIHFYASCG-----SLESAKNVFDKMPQRSLVSWNAMID 200
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------ 150
A+ E ++ + + P+ +T+ VI A A +G H
Sbjct: 201 AFVLFGE-FETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGV 259
Query: 151 ---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
D ++++NSL+ Y CG L +A +F + K DV SWNSMI GF G E A+E
Sbjct: 260 SVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALEC 319
Query: 208 YREM-EVENVKPDEVTMVVVLSACAKK 233
+ M + P+ +T V VLSAC +
Sbjct: 320 FERMIRISRFVPNSITFVGVLSACNHR 346
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 28/163 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SL+ A ++F+ + + ++ +WN++I ++ + + F +++ S + PN T V
Sbjct: 280 GSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSITFVGV 339
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A G+ M ++ I L H+ + LA A
Sbjct: 340 LSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARA----------------- 382
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
G ++A+EL M +KPD V +L +C KK
Sbjct: 383 --------GLIDEALELVASMP---MKPDVVIWRSLLDSCCKK 414
>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 130/228 (57%), Gaps = 16/228 (7%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARK-MFDQIPQPNLYT---WNT 93
+L +IH Q+L +P +K +T + S +++YA +F LY +NT
Sbjct: 47 KLTQIHTQILKLGLSNNPLVLTK-YTSTS-SNLHAIDYASSFIFSPESDKRLYDTFLFNT 104
Query: 94 LIRAYSSSDEPIQSFMIFL-QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+IRAY+ S+ + + + +L+ PN+FT PFV+KA A +G+++HG
Sbjct: 105 IIRAYAHSNNVSKGKALCMYKLMLEYDVLPNKFTYPFVLKACAGIGYLNLGKSVHGSVLK 164
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYC--VFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
F++D+ + N+++H Y CG + + VF + K+D VSW++MI G+ G AI
Sbjct: 165 FGFDNDVHVQNTMVHMYC-CGRDGIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAI 223
Query: 206 ELYREMEVENV-KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+L+REM++E V +PDE+TMV VLSAC LE G WV S+IEK ++
Sbjct: 224 DLFREMQIEGVCRPDEITMVSVLSACTDLGALELGKWVESYIEKEKVQ 271
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 85/165 (51%), Gaps = 5/165 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
+E+AR++FD++ + + +W+ +I Y+ + +F ++ P+E T+ V+
Sbjct: 187 GIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAIDLFREMQIEGVCRPDEITMVSVL 246
Query: 132 KAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A +G+ + E + V + N+LI +A CGD+ A +F + + +V
Sbjct: 247 SACTDLGALELGKWVESYIEKEKVQKSVELCNALIDMFAKCGDVDKAIKLFRNMKDRTIV 306
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
SW S+I+G G +A+E + EM V PD+V + +LSAC+
Sbjct: 307 SWTSVIAGLAMHGRGLEAVEFFEEMIKSGVLPDDVAFIGLLSACS 351
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 132/257 (51%), Gaps = 39/257 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N QLK+IH +++ + D +L + S+F +YA +F+Q+ P+ +TWN
Sbjct: 31 SNFSQLKQIHTKIIKHNLTNDQLLVRQLIS--VSSSFGETQYASLVFNQLQSPSTFTWNL 88
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IR+ S + +P ++ ++F+ ++ + P F ++FT PFVIKA R+G +HG+
Sbjct: 89 MIRSLSLNHKPREALLLFILMLSHQPQF-DKFTFPFVIKACLASSSLRLGTQVHGLAIKA 147
Query: 150 -FEDDLVISNSLIHFYAVCG-------------------------------DLAMAYCVF 177
F +D+ N+L+ Y CG L A VF
Sbjct: 148 GFFNDVFFQNTLMDLYFKCGKPDCGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVF 207
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ ++VVSW +MI+ +V+ ++A +L+R M+V++VKP+E T+V +L A + L
Sbjct: 208 NQMPTRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLS 267
Query: 238 FGIWVSSHIEKNGIKMD 254
G WV + KNG +D
Sbjct: 268 MGRWVHDYAHKNGFVLD 284
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L + S L+ A +F+Q+P N+ +W +I AY + P ++F +F ++ + PNEF
Sbjct: 193 GLVSNSQLDSAEIVFNQMPTRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVK-PNEF 251
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ +++A+ + +G+ +H F D + +LI Y+ CG L A VF ++
Sbjct: 252 TIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCYLGTALIDMYSKCGSLQDARKVFDVM 311
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELY-REMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
K + +WNSMI+ G E+A+ L+ E +V+PD +T V VLSACA +++ G
Sbjct: 312 QSKSLATWNSMITSLGVHGCGEEALYLFEEMEEEASVEPDAITFVGVLSACANTGNVKDG 371
Query: 240 I 240
+
Sbjct: 372 L 372
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 126/250 (50%), Gaps = 19/250 (7%)
Query: 12 PRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS 71
PR P L + P +L +IH +L +P +K + +L
Sbjct: 25 PRAPEQNCLALLQACNALP-------KLTQIHTHILKLGLHNNPLVLTKFASISSL--IH 75
Query: 72 SLEYARK-MFDQIPQPNLYT---WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ +YA +F LY +NTLIRAY+ + + ++ + PN+FT
Sbjct: 76 ATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTY 135
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVC-GDLAMAYCVFVMIG 181
PFV+KA A +GQ +HG F+ D+ + N+++H Y+ C G + A VF +
Sbjct: 136 PFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMP 195
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
K D V+W++MI G+ G +A+ L+REM++ V PDE+TMV +LSAC LE G W
Sbjct: 196 KSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKW 255
Query: 242 VSSHIEKNGI 251
+ ++IE++ I
Sbjct: 256 IEAYIERHEI 265
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 95/184 (51%), Gaps = 10/184 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+++ CA + ARK+FD++P+ + TW+ +I Y+ ++ +F ++ +
Sbjct: 176 MYSCCA----GGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQM-AEV 230
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYC 175
P+E T+ ++ A +G+ I E + +SN+LI +A CGD++ A
Sbjct: 231 CPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALK 290
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F + +K +VSW S+I G G ++A L+ EM V PD+V + +LSAC+
Sbjct: 291 LFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGL 350
Query: 236 LEFG 239
+E G
Sbjct: 351 VERG 354
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 130/256 (50%), Gaps = 37/256 (14%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+LK+IHA +++ D SK+ + ALS ++ Y+ + + P ++ WNT+IR
Sbjct: 29 ELKKIHALVITLGLSQDEPFVSKILSFSALSDSGNINYSCWVLFSLLNPTIFNWNTVIRG 88
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS S P S +F+Q++ FP+ T PF++KA+AR ++ +G +IH FE
Sbjct: 89 YSKSKNPNGSISVFIQML-KVGVFPDYLTYPFLVKASARLLKRELGFSIHAHIIKHGFES 147
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM--------------------- 191
D ISNSL+H YA GD++ A VF + K++VSWNSM
Sbjct: 148 DRFISNSLVHMYASFGDISCARYVFDGMPVKNLVSWNSMVDGSAKCGNMVLARQLFDLMP 207
Query: 192 ----------ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
I G+V+ G + A+ ++ +M V KP+EVTMV VL ACA L+ G
Sbjct: 208 DRDVLSWSSLIDGYVKNGDYGDAMVVFDKMRVSGPKPNEVTMVSVLCACAHLGALDKGRM 267
Query: 242 VSSHIEKNGIKMDLTF 257
+ ++ N + + L
Sbjct: 268 MHHYVIDNKLPLTLVL 283
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 92/163 (56%), Gaps = 8/163 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD +P ++ +W++LI Y + + + ++F ++ + P PNE T+ V+ A A
Sbjct: 199 ARQLFDLMPDRDVLSWSSLIDGYVKNGDYGDAMVVFDKMRVSGPK-PNEVTMVSVLCACA 257
Query: 136 RPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKK--DVVSW 188
G+ +H D+ LV+ SL+ YA CG + A+ VF I + DV+ W
Sbjct: 258 HLGALDKGRMMHHYVIDNKLPLTLVLCTSLVDMYAKCGAINEAFDVFRGIPAELSDVLLW 317
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
N+MI G G +++++L++EM VKPDE+T + +L ACA
Sbjct: 318 NAMIGGLATHGLVKESLDLFKEMNFVGVKPDEITYLSLLHACA 360
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 124/226 (54%), Gaps = 6/226 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K L+++HA +L T DP + AL +++YA +F+ I +P +N +IR
Sbjct: 35 KDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIR 94
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ P + ++F ++ + ++FT V+KA +R R G+ +H + F+
Sbjct: 95 GLAFKRSPDNALLLFKKM-HEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFK 153
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + N+LI YA CG + +A VF + ++ +V+WNSM+SG+ + G +++ ++L+R++
Sbjct: 154 SNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKI 213
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
++ D+VTM+ VL AC + +LE G + +I G++ + T
Sbjct: 214 LELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTL 259
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 124/230 (53%), Gaps = 16/230 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ +++HA +L + F + + + L A + AR +FD +P+ ++ WN+++
Sbjct: 138 REGEQVHALILKSGFKSNEFVENTLIQMYA--NCGQIGVARHVFDGMPERSIVAWNSMLS 195
Query: 97 AYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI------H 147
Y+ + DE ++ F L+L ++ T+ V+ A R +G+ I
Sbjct: 196 GYTKNGLWDEVVKLFRKILELRIEF----DDVTMISVLMACGRLANLEIGELIGEYIVSK 251
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
G+ ++ ++ SLI YA CG + A +F + K+DVV+W++MISG+ + ++A+ L
Sbjct: 252 GLRRNN-TLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNL 310
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ EM+ NV P+EVTMV VL +CA E G WV +I+K +K+ +T
Sbjct: 311 FHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTL 360
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 89/166 (53%), Gaps = 6/166 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++ ARK+FD++ + ++ W+ +I Y+ +D ++ +F ++ + Y PNE T+ V
Sbjct: 271 GQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVY-PNEVTMVSV 329
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ + A + G+ +H + + + LI FYA CG + + VF + K+V
Sbjct: 330 LYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNV 389
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+W ++I G G + A+E + M +VKP++VT + VLSAC+
Sbjct: 390 FTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACS 435
>gi|356567046|ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Glycine max]
Length = 505
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 6/225 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QL++I AQ+ + + D S+L C+LS +L +AR P+ +WN LIR
Sbjct: 31 QLRQIQAQVHVSGLYQDTRVLSELVYFCSLSPSKNLRHARSFVHHAATPSPISWNILIRG 90
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFED 152
Y++SD P+++F +F ++ PN+ T PF++K+ A G+ +H +
Sbjct: 91 YAASDSPLEAFWVFRKMRERGA-MPNKLTFPFLLKSCAVASALFEGKQVHADAVKCGLDS 149
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N+LI+FY C + A VF + ++ VVSWNS+++ VE + I + M
Sbjct: 150 DVYVGNNLINFYGCCKKIVDARKVFGEMPERTVVSWNSVMTACVESLWLGDGIGYFFRMW 209
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+PDE +MV++LSACA+ L G WV S + G+ + +
Sbjct: 210 GCGFEPDETSMVLLLSACAELGYLSLGRWVHSQLVLRGMVLSVQL 254
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL--FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
K++HA + D Y + L F C ARK+F ++P+ + +WN+++ A
Sbjct: 136 KQVHADAVKCGLDSDVYVGNNLINFYGCCKKIVD----ARKVFGEMPERTVVSWNSVMTA 191
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDLVI 156
S F ++ + + P+E ++ ++ A A +G+ +H + +V+
Sbjct: 192 CVESLWLGDGIGYFFRM-WGCGFEPDETSMVLLLSACAELGYLSLGRWVHSQLVLRGMVL 250
Query: 157 S----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM- 211
S +L+ Y G L A VF + ++V +W++MI G + GF E+A+EL+ M
Sbjct: 251 SVQLGTALVDMYGKSGALGYARDVFERMENRNVWTWSAMILGLAQHGFGEEALELFAIMN 310
Query: 212 ----EVENVKPDEVTMVVVLSACA 231
+ +++P+ VT + VL AC+
Sbjct: 311 NNNNDNRDIRPNYVTYLGVLCACS 334
>gi|255572205|ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533604|gb|EEF35342.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 520
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 130/247 (52%), Gaps = 13/247 (5%)
Query: 14 HPNPTTLT-VNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS 72
PN TLT V + R L + ++ K IH +++ D + S L F
Sbjct: 128 EPNSVTLTTVISSCAR----LLDLERGKEIHREVMQNGMVLDGFVGSALVD--MYGKFGC 181
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ A+ +F+Q+P+ L WN+LI YSS+ + + +F ++ P TL ++
Sbjct: 182 LDLAKDIFEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRMNMEGTK-PTVTTLSSILL 240
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A +R + G+ IHG + D+ +S+ LI Y CG + A +F M+ K +VV
Sbjct: 241 ACSRAAHLQHGRFIHGYAVRNRVQLDIFVSSGLIELYFKCGKVQSAENIFYMLPKANVVL 300
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN MISG+V G + KA+++Y EM++ +VKPD VT +LSAC++ LE G + + I
Sbjct: 301 WNVMISGYVTIGDYVKALDMYDEMKIASVKPDAVTFSSILSACSQLAALEKGKEIHNCIT 360
Query: 248 KNGIKMD 254
KN ++ +
Sbjct: 361 KNDLETN 367
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 17/245 (6%)
Query: 17 PTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYA 76
P+ L G R+ + + IH ++ + F FD AS L + A YA
Sbjct: 34 PSVLKACGGLGRYDYG-------RMIHTHLIKSGFVFDIVVASSLVSLHAKCNL--FGYA 84
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
++FD++P+ ++ WNT+I Y + ++ +F ++ +S + PN TL VI + AR
Sbjct: 85 IQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKM-RDSGFEPNSVTLTTVISSCAR 143
Query: 137 PVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G+ IH GM D V ++L+ Y G L +A +F + KK +V+WNS
Sbjct: 144 LLDLERGKEIHREVMQNGMVLDGFV-GSALVDMYGKFGCLDLAKDIFEQMPKKTLVAWNS 202
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+I+G+ ++ IEL+ M +E KP T+ +L AC++ L+ G ++ + +N
Sbjct: 203 LIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILLACSRAAHLQHGRFIHGYAVRNR 262
Query: 251 IKMDL 255
+++D+
Sbjct: 263 VQLDI 267
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIH-----G 148
+ AY+ + ++ +F +L+ PY P+ FT P V+KA ++ G+ IH
Sbjct: 1 MAAYTKNCMYTEALELFDRLL-QYPYLQPDSFTYPSVLKACGGLGRYDYGRMIHTHLIKS 59
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F D+V+++SL+ +A C A +F + ++DV WN++IS + + G EKA+E++
Sbjct: 60 GFVFDIVVASSLVSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMF 119
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+M +P+ VT+ V+S+CA+ DLE G + + +NG+ +D
Sbjct: 120 GKMRDSGFEPNSVTLTTVISSCARLLDLERGKEIHREVMQNGMVLD 165
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 24/250 (9%)
Query: 15 PNPTTLTV------NNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS 68
P TTL+ H +H F+ R+ + + + L+ C
Sbjct: 230 PTVTTLSSILLACSRAAHLQHGRFIHGYAVRNRVQLDIFVSSGLIE------LYFKCG-- 281
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
++ A +F +P+ N+ WN +I Y + + +++ ++ ++ S P+ T
Sbjct: 282 ---KVQSAENIFYMLPKANVVLWNVMISGYVTIGDYVKALDMYDEMKIASVK-PDAVTFS 337
Query: 129 FVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
++ A ++ G+ IH E + ++ +L+ YA CG + A VF + ++
Sbjct: 338 SILSACSQLAALEKGKEIHNCITKNDLETNEIVMGALLDMYAKCGAVDEALSVFNKLPER 397
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
D++SW S+IS + G +A+ L+ E++ PD VT + VLSAC+ ++ G +
Sbjct: 398 DLLSWTSIISAYGSHGQALEALRLFEELQQSKASPDAVTFLAVLSACSHAGLVDKGYYYF 457
Query: 244 SHIEKN-GIK 252
+ + N GIK
Sbjct: 458 NQMITNYGIK 467
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 118/211 (55%), Gaps = 7/211 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++L +IHA +L + +P + KL CA+S SL YA+ +F +I P WN++IR
Sbjct: 37 RKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIR 96
Query: 97 AYSSSDEPIQ--SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
+S S P+Q + + + ++ S P+ +T F++KA + + +HG
Sbjct: 97 GFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFG 156
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
++ D+V+ +LI YA G + A+ VF + +D+VSWNSMIS + + G E+A+++Y
Sbjct: 157 YDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYD 216
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+M + NV D T+V +LS+CA L G+
Sbjct: 217 QMRISNVGFDGFTLVSLLSSCAHVGALHMGV 247
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A K+F+++P +L +WN++I Y + ++ ++ Q+ ++ F + FTL ++
Sbjct: 177 IETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGF-DGFTLVSLLS 235
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ A +G +H +++ + N+LI YA CG LA A +F + K+DV +
Sbjct: 236 SCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFT 295
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
WNSMI G+ G ++AI + M + V+P+ +T + +L C+ + ++ G+
Sbjct: 296 WNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGV 348
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 118/211 (55%), Gaps = 7/211 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++L +IHA +L + +P + KL CA+S SL YA+ +F +I P WN++IR
Sbjct: 19 RKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIR 78
Query: 97 AYSSSDEPIQ--SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
+S S P+Q + + + ++ S P+ +T F++KA + + +HG
Sbjct: 79 GFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFG 138
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
++ D+V+ +LI YA G + A+ VF + +D+VSWNSMIS + + G E+A+++Y
Sbjct: 139 YDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYD 198
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+M + NV D T+V +LS+CA L G+
Sbjct: 199 QMRISNVGFDGFTLVSLLSSCAHVGALHMGV 229
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A K+F+++P +L +WN++I Y + ++ ++ Q+ ++ F + FTL ++
Sbjct: 159 IETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGF-DGFTLVSLLS 217
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ A +G +H +++ + N+LI YA CG LA A +F + K+DV +
Sbjct: 218 SCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFT 277
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
WNSMI G+ G ++AI + M + V+P+ +T + +L C+ + ++ G+
Sbjct: 278 WNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGV 330
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 143/301 (47%), Gaps = 51/301 (16%)
Query: 1 METLSTPVISIP----RHPNPTTLTVNNGHQRHPHF--LTNQKQL---KRIHAQMLSTDF 51
M L++PV ++ P+P V++ HP L+N K L K+IH+Q++ T
Sbjct: 1 MVVLASPVSTLQVLSFSDPSPPYKLVHD----HPSLTLLSNCKTLQTLKQIHSQIIKTGL 56
Query: 52 FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF 111
++ SKL CA+S L YA +F I PN WN +IR SSS+ P + +
Sbjct: 57 HNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYY 116
Query: 112 LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAV 166
+ ++ +S PNE+T P + K+ + G+ +H E + + SLI+ YA
Sbjct: 117 VHMI-SSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQ 175
Query: 167 CGDLAMAYCVF-------------VMIGK------------------KDVVSWNSMISGF 195
G+L A VF ++ G +DVVSWN+MISG+
Sbjct: 176 NGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGY 235
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK-RDLEFGIWVSSHIEKNGIKMD 254
+ G E+A+ + EM V P+ TM+ VLSACA+ L+ G WV S IE G+ +
Sbjct: 236 AQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSN 295
Query: 255 L 255
+
Sbjct: 296 I 296
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 109/202 (53%), Gaps = 9/202 (4%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D S + L T A F L+ AR++FD+IP ++ +WN +I Y+ S ++ M F +
Sbjct: 193 DAVSFTALITGYASKGF--LDEARELFDEIPVRDVVSWNAMISGYAQSGR-VEEAMAFFE 249
Query: 114 LVYNSPYFPNEFTLPFVIKAAARP-VQFRVGQAIHGMFED-----DLVISNSLIHFYAVC 167
+ + PN T+ V+ A A+ ++G + ED ++ + N LI Y C
Sbjct: 250 EMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKC 309
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
GDL A +F I K+VVSWN MI G+ +++A+ L+R M N+ P++VT + +L
Sbjct: 310 GDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSIL 369
Query: 228 SACAKKRDLEFGIWVSSHIEKN 249
ACA L+ G WV ++++KN
Sbjct: 370 PACANLGALDLGKWVHAYVDKN 391
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 8/174 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE A +F++I N+ +WN +I Y+ ++ +F +++ S PN+ T ++
Sbjct: 312 LEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMM-QSNIDPNDVTFLSILP 370
Query: 133 AAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
A A +G+ +H + ++ + SLI YA CGDLA+A +F + K +
Sbjct: 371 ACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSL 430
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+WN+MISGF G + A+ L+ M E PD++T V VL+AC L G
Sbjct: 431 ATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLG 484
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 29/174 (16%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L A+++FD + +L TWN +I ++ + +F ++ + + P++ T V+
Sbjct: 415 LAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMT-SEGFVPDDITFVGVLT 473
Query: 133 AAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
A +G+ D +S L H+ MI
Sbjct: 474 ACKHAGLLSLGRRYFSSMIQDYKVSPKLPHY-------------------------GCMI 508
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
F G F++A L + ME+ KPD +L AC R +E V+ H+
Sbjct: 509 DLFGRAGLFDEAETLVKNMEM---KPDGAIWCSLLGACRIHRRIELAESVAKHL 559
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 17/228 (7%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
++K +++IHAQM+ + S P + YA +F Q+P PN Y +N +
Sbjct: 44 SKKPMQQIHAQMI-----INSLSKPNFLLP-RIIDLKDFAYASLLFTQMPNPNDYAFNVM 97
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYF---PNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
IR +++ +++ + +QL Y PN FT PF+ + A V GQ H +
Sbjct: 98 IRGLTTT---WRNYSLAIQLYYQMKSLGLKPNNFTFPFLFISCANLVALHCGQIAHSLVL 154
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F +D I++SLI YA C L A VF I ++D+VSWNSMISG+ + GF +A+
Sbjct: 155 KMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNSMISGYTKMGFAREAVR 214
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
L+ EM + +P E+T+V +L AC DL G WV + I ++++
Sbjct: 215 LFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMELN 262
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 117/218 (53%), Gaps = 8/218 (3%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
H+ +L F D + L T A S L+ ARK+FD+I + ++ +WN++I Y+
Sbjct: 150 HSLVLKMGFNNDSHINHSLITMYA--KCSKLDSARKVFDEILERDIVSWNSMISGYTKMG 207
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS--- 159
++ +F+++ + P E TL ++ A +G+ + + D + NS
Sbjct: 208 FAREAVRLFMEM-REQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMELNSYTA 266
Query: 160 --LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
LI Y CGDL A VF + +KD+V+WN+MI+G+ + G ++A+ L+ M +
Sbjct: 267 SALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVMREAGIT 326
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
P+E+TMVVVLSACA L+ G WV + + G++ D+
Sbjct: 327 PNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDV 364
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 21/198 (10%)
Query: 53 FDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFM 109
+ Y+AS L + C L AR++FD + + ++ TWN +I Y+ + ++
Sbjct: 261 LNSYTASALIDMYGKCG-----DLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMT 315
Query: 110 IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ-----AIHGMFEDDLVISNSLIHFY 164
+F ++ + PNE T+ V+ A A +G+ A + D+ ++++L+ Y
Sbjct: 316 LF-NVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMY 374
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY-REMEVENVKPDEVTM 223
A CG L A VF + K+ VSWN+MIS G +A+ L+ R + V+P+++T
Sbjct: 375 AKCGSLDNALRVFENMPHKNEVSWNAMISALAFHGRAREALSLFSRMLNGSTVRPNDITF 434
Query: 224 VVVLSACAKKRDLEFGIW 241
+ V +AC FGI+
Sbjct: 435 IGVFAAC------RFGIF 446
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 128/255 (50%), Gaps = 38/255 (14%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
+ ++ + K+IHA ++ + +K+ C ++YA ++F+Q+ PN++ +N
Sbjct: 20 VKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLC--DKLGDMDYATRLFNQVSNPNVFLYN 77
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---- 148
++IRAY+ + I+ QL+ + FP+ FT PF+ K+ A +G+ +HG
Sbjct: 78 SIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYK 137
Query: 149 --------------------------------MFEDDLVISNSLIHFYAVCGDLAMAYCV 176
M E D++ NSL+ YA G + A +
Sbjct: 138 FGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGL 197
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F ++ K +VSW +MISG+ G + +A++ +REM++ ++PDE++++ VL +CA L
Sbjct: 198 FHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSL 257
Query: 237 EFGIWVSSHIEKNGI 251
E G W+ + E+ G+
Sbjct: 258 ELGKWIHMYAERRGL 272
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 13/180 (7%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ ++ A+ +F + + +W +I Y+ +++ M F + + + P+E +L
Sbjct: 186 ARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEA-MDFFREMQLAGIEPDEISL 244
Query: 128 PFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
V+ + A +G+ IH G+ + V N+LI Y+ CG L+ A +F
Sbjct: 245 ISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGV-CNALIEMYSKCGMLSQAIQLFEQTK 303
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
KDV+SW++MISG+ G +A E + EM+ VKP+ +T + +LSAC+ G+W
Sbjct: 304 GKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACS-----HVGLW 358
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 34/187 (18%)
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
++++ C + L A ++F+Q ++ +W+T+I Y+ ++F F+++ +
Sbjct: 284 EMYSKCGM-----LSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEM-QRAK 337
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
PN T ++ A + ++ G M D I + H+ + LA A
Sbjct: 338 VKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARA------ 391
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G E+A+E+ + M V KPD +LS+C K +L+
Sbjct: 392 -------------------GKLERAVEITKTMPV---KPDSKIWGSLLSSCRTKGNLDVA 429
Query: 240 IWVSSHI 246
+ H+
Sbjct: 430 LVAMDHL 436
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 125 FTLPFVIKAAARPVQFRVGQAI--HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ +PF+ + +R ++ I HG+ + +++ ++ GD+ A +F +
Sbjct: 12 YFIPFLQRVKSRNEWKKIHACIIVHGLSQSSFMVTK-MVDLCDKLGDMDYATRLFNQVSN 70
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK-PDEVTMVVVLSACAKKRDLEFGIW 241
+V +NS+I + + I +Y+++ + ++ PD T + +CA G
Sbjct: 71 PNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQ 130
Query: 242 VSSHIEKNG 250
V H+ K G
Sbjct: 131 VHGHLYKFG 139
>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 709
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 20/238 (8%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDP--------YSASKLFTPCALSTFSSLEYARKM 79
RH + + K +H +++ P + S F C + ARK+
Sbjct: 87 RHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGC-------VPLARKL 139
Query: 80 FDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139
FD + P+L+ WN +I+ Y + +F ++ + ++P+++T P VIKA +
Sbjct: 140 FDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSM 199
Query: 140 FRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
VG IHG F ++ + NSL+ Y CG + +A VF ++ K+ VVSWN+MISG
Sbjct: 200 LNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISG 259
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+ + G E+A+ ++ M V+PD T+V L +C ++LE GI V ++KN ++
Sbjct: 260 WFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQ 317
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 102/198 (51%), Gaps = 14/198 (7%)
Query: 42 IHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
IH + L + F F S ++ C + AR++F+ + + ++ +WNT+I +
Sbjct: 206 IHGRALVSGFSSNMFVQNSLLAMYMNCG-----KVGLARQVFNVMLKRSVVSWNTMISGW 260
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ P ++ +F ++ ++ P+ T+ + + + +G +H + ++
Sbjct: 261 FQNGRPEEALAVFNSMM-DARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEK 319
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + N+L+ Y+ CG + A VF +KDV++W SMI+G++ G + A+ L M++
Sbjct: 320 IEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQL 379
Query: 214 ENVKPDEVTMVVVLSACA 231
+ V P+ VT+ +LSACA
Sbjct: 380 DGVVPNAVTLASLLSACA 397
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 89/194 (45%), Gaps = 13/194 (6%)
Query: 59 SKLFTPCA-----LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
+ L + CA + +++ Y+ ++F + + WN L+ ++ ++ +F
Sbjct: 390 ASLLSACASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKS 449
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG 168
++ N T VI A A + +H F + + LI Y+ CG
Sbjct: 450 MLIEEVE-ANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCG 508
Query: 169 DLAMAYCVFVMI--GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
L A+ +F I +KD++ W+ +I+G+ G E A+ L+ +M ++P+E+T V
Sbjct: 509 SLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSV 568
Query: 227 LSACAKKRDLEFGI 240
L AC+ + ++ G+
Sbjct: 569 LHACSHRGLVDDGL 582
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 24/183 (13%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A +F + + ++ TW ++I Y + +S + + PN TL
Sbjct: 331 SRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNA-KSALALCPAMQLDGVVPNAVTL 389
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
++ A A SL + YA C ++ ++ VF KK V
Sbjct: 390 ASLLSACA-----------------------SLCYMYAKCNAVSYSFQVFAKTSKKRTVP 426
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN+++SG + +A+ L++ M +E V+ + T V+ A A DL+ + + S++
Sbjct: 427 WNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLV 486
Query: 248 KNG 250
++G
Sbjct: 487 RSG 489
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 41/214 (19%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIP--Q 85
L + KQ+ +H+ ++ + F SK+ L S SL+YA K+FD+IP +
Sbjct: 471 ILADLKQVMNLHSYLVRSGFI------SKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKE 524
Query: 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
++ W+ LI Y + ++F Q+V+ S PNE T V+ A +
Sbjct: 525 KDIIVWSVLIAGYGMHGHGETAVLLFNQMVH-SGMQPNEITFTSVLHACSH--------- 574
Query: 146 IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
G+ +D L + +I Y CV ++G+ G ++A
Sbjct: 575 -RGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGR---------------AGRLDEAY 618
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+L + M + + +L AC +++E G
Sbjct: 619 DLIKSMPFQQ---NHSIWGALLGACLIHQNVELG 649
>gi|255584793|ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 68/280 (24%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
TN + LK+IHA ++ F Y+ +L A+ +++YA ++FDQ+ +P+++ WNT
Sbjct: 24 TNLRSLKQIHASLIIKGFNSSSYALRELIFASAIVIPGTIDYAHQLFDQVAEPDIFMWNT 83
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
++R S S PI++ ++ Q+ N P++FT F++KA R +G IHG
Sbjct: 84 MMRGSSQSPSPIKAVSLYTQM-ENCGIKPDKFTFSFLLKACTRLEWRNMGFCIHGKALKH 142
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW-------------------- 188
F+++ + N+L++++A CGDL +A +F K+DVV+W
Sbjct: 143 GFQENTFVRNTLVYYHAKCGDLGIAREMFDDSAKRDVVAWSALTAGYARRGELCMARRLF 202
Query: 189 ------------------------------------------NSMISGFVEGGFFEKAIE 206
N+MI+GFV G E+A+E
Sbjct: 203 DEMPVKDLVAWNVIITAYVKRGEMACARKLFNEVPRRDVVTWNAMIAGFVHCGENEQALE 262
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
++ EM +PDEVTM+ +LSAC DLE G V S I
Sbjct: 263 MFEEMISVGEQPDEVTMLSLLSACTDLGDLEVGKKVHSSI 302
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+F+++P+ ++ TWN +I + E Q+ +F +++ P+E T+ ++ A
Sbjct: 229 ARKLFNEVPRRDVVTWNAMIAGFVHCGENEQALEMFEEMISVGEQ-PDEVTMLSLLSACT 287
Query: 136 RPVQFRVGQAIHG----MFEDDL--VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
VG+ +H M DL ++ N+L + YA CG + A VF + +KDV +WN
Sbjct: 288 DLGDLEVGKKVHSSILEMSLGDLSVLLGNALTYMYAKCGSIERALEVFRGMREKDVTTWN 347
Query: 190 SMISGFVEGGFFEKAIELYREME-VENVKPDEVTMVVVLSACAKKRDLEFG 239
S+I G G E++I L+REM+ + N+KP+E+T V VL AC+ +E G
Sbjct: 348 SVIVGLALHGHAEESIHLFREMQRLNNIKPNEITFVGVLVACSHAGKVEEG 398
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G + A+ +F + + D+ WN+M+ G + KA+ LY +ME +KPD+ T +L
Sbjct: 61 GTIDYAHQLFDQVAEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLL 120
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIK 252
AC + G + K+G +
Sbjct: 121 KACTRLEWRNMGFCIHGKALKHGFQ 145
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 131/256 (51%), Gaps = 42/256 (16%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N +LK+IHA ++ + +K+ C + + EYA +F ++ PN + +N +
Sbjct: 26 NIVELKKIHAHIVKFSLSQSSFLVTKMVDVC--NHHAETEYANLLFKRVADPNAFLYNAM 83
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNS----PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
IRAY + + + ++ Q++ +S P FP++FT PFV+K+ A + + +G+ +HG
Sbjct: 84 IRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHV 143
Query: 151 -----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG------ 199
+ + V+ NSL+ Y C L A+ VF + ++D VSWN++ISG V G
Sbjct: 144 FKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRAR 203
Query: 200 -FFEK------------------------AIELYREMEVENVKPDEVTMVVVLSACAKKR 234
FE+ A+E +R M++ ++PDE+++V VL ACA+
Sbjct: 204 AIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLG 263
Query: 235 DLEFGIWVSSHIEKNG 250
LE G W+ + +K G
Sbjct: 264 ALELGKWIHFYADKAG 279
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 10/178 (5%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTL 127
+ AR +F+++ +++W ++ Y+ + F +Q+V P+E +L
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMV---GIEPDEISL 252
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A+ +G+ IH F ++ + N+LI YA CG + +F + +
Sbjct: 253 VSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNE 312
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+DV+SW++MI G G +AIEL++EM+ ++P+ +T V +LSACA L G+
Sbjct: 313 RDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGL 370
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 74/176 (42%), Gaps = 29/176 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S++ R++FDQ+ + ++ +W+T+I ++ ++ +F Q + + PN T +
Sbjct: 298 GSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELF-QEMQKAKIEPNIITFVGL 356
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A A G+ + L S+ Y + + C+ ++G
Sbjct: 357 LSACAHA----------GLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGL-------- 398
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G ++A+EL ++M +KPD +LS+C +LE + H+
Sbjct: 399 -------SGRLDQALELIKKMP---MKPDSAIWGSLLSSCRSHSNLEIAVIAMEHL 444
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 10/224 (4%)
Query: 40 KRIHAQM-LSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+R+H + ST F D +++ T S S +R +FD++ + NL+ WN ++ AY
Sbjct: 18 RRLHEMVSASTQFCNDFVLNTRIIT--MYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAY 75
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ ++ + IF +L+ + + P+ FTLP VIKA A + +GQ IHGM D
Sbjct: 76 TRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSD 135
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + N+LI Y CG + A VF + ++++VSWNS+I GF E GF +++ +REM V
Sbjct: 136 VFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLV 195
Query: 214 --ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E+ PD T+V VL CA + D+E G+ V K G+ +L
Sbjct: 196 GEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEEL 239
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 16/207 (7%)
Query: 42 IHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
IH D D + + L + C L +E A K+F+ +P+ NL +WN++I +
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGL-----VEEAVKVFEHMPERNLVSWNSIICGF 177
Query: 99 SSSDEPIQSFMIFLQ-LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
S + +SF F + LV + P+ TL V+ A G A+HG+ +
Sbjct: 178 SENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNE 237
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+L+++NSLI Y+ C L+ A +F KK++VSWNSMI G+ + L ++M+
Sbjct: 238 ELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQ 297
Query: 213 VEN--VKPDEVTMVVVLSACAKKRDLE 237
E+ +K DE T++ VL C ++ +L+
Sbjct: 298 TEDAKMKADEFTILNVLPVCLERSELQ 324
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 105/208 (50%), Gaps = 12/208 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTP--CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+ IH L DP+ L + C F+ A+ +FD + +L +WN +I
Sbjct: 428 EEIHGFALRNGLAVDPFIGISLLSLYICCGKPFA----AQVLFDGMEHRSLVSWNVMIAG 483
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFED 152
YS + P ++ +F Q++ + P E + V A ++ R+G+ +H +
Sbjct: 484 YSQNGLPDEAINLFRQMLSDGIQ-PYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTE 542
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ +S+S+I YA G + ++ +F + +KDV SWN +I+G+ G ++A+EL+ +M
Sbjct: 543 DIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKML 602
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGI 240
+KPD+ T +L AC+ +E G+
Sbjct: 603 RLGLKPDDFTFTGILMACSHAGLVEDGL 630
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 109/219 (49%), Gaps = 17/219 (7%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
++ +++ + D YS + + A+ +FD+ + N+ +WN++I Y+
Sbjct: 235 LNEELMVNNSLIDMYSKCRFLSE-----------AQLLFDKNDKKNIVSWNSMIGGYARE 283
Query: 102 DEPIQSFMIFLQL-VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLV 155
++ ++F + ++ ++ +EFT+ V+ + + + +HG + + +
Sbjct: 284 EDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNEL 343
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
++N+ I Y CG L + VF ++ K V SWN+++ G+ + KA++LY +M
Sbjct: 344 VANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG 403
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ PD T+ +L AC++ + L +G + +NG+ +D
Sbjct: 404 LDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVD 442
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 84/207 (40%), Gaps = 31/207 (14%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +H L D + +S + A L ++++FD++ + ++ +WN +I Y
Sbjct: 529 KELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGL--SQRIFDRLREKDVASWNVIIAGYG 586
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS 159
++ +F +++ P++FT ++ A + G+ ED L N
Sbjct: 587 IHGRGKEALELFEKML-RLGLKPDDFTFTGILMACSHA----------GLVEDGLEYFNQ 635
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
+++ + + L CV M+G+ G + A+ L EM + PD
Sbjct: 636 MLNLHNIEPKLEHYTCVVDMLGR---------------AGRIDDALRLIEEMPGD---PD 677
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHI 246
+LS+C +L G V++ +
Sbjct: 678 SRIWSSLLSSCRIHGNLGLGEKVANKL 704
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+I +Q+ D + +KL CA S+ +L YA K+F+ + P+L+ +N +++
Sbjct: 158 QLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKM 217
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y+ + ++F QL + +P+ FT PFV+KA R G+ + G +
Sbjct: 218 YAKRGILRKVLLLFQQLREDG-LWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDL 276
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D + NSLI Y ++ A +F + +D VSWN MISG+V FE AI +REM+
Sbjct: 277 DNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQ 336
Query: 213 VE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
E N KPDE T+V LSAC ++LE G + +++ K
Sbjct: 337 QEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRK 373
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 37/258 (14%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + +Q +++ ++ T D Y + L S++E A+K+FD++ + +WN
Sbjct: 256 LRDVRQGEKVRGFIVKTGMDLDNYVYNSLID--MYYELSNVENAKKLFDEMTTRDSVSWN 313
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
+I Y + F ++ P+E T+ + A +G IH
Sbjct: 314 VMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRK 373
Query: 153 DL----VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG--------- 199
+L I N+L+ YA CG L +A +F + K+V+ W SMISG++ G
Sbjct: 374 ELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLF 433
Query: 200 ----------------------FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
F+ A+ L+REM+++ VKPD+ T+V +L+ CA+ LE
Sbjct: 434 DKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALE 493
Query: 238 FGIWVSSHIEKNGIKMDL 255
G W+ ++++N I MD+
Sbjct: 494 QGKWIHGYLDENRITMDV 511
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L AR +FD+ P ++ W +I Y + +F ++ P++FT+ +
Sbjct: 424 GDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVK-PDKFTVVTL 482
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A+ G+ IHG ++ D+V+ +LI Y+ CG + + +F + KD
Sbjct: 483 LTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDT 542
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
SW S+I G G +A+ L+ EME KPD++T + VLSAC+ +E G
Sbjct: 543 ASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEG 596
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 140 FRVGQAIHGMFEDDLVISNSLIHFYA--VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
FR+G E D N L+ F A G+L A +F + + +N M+ + +
Sbjct: 167 FRIG------LEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAK 220
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
G K + L++++ + + PD T VL A RD+ G V I K G+ +D
Sbjct: 221 RGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLD 277
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 123/229 (53%), Gaps = 14/229 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L K+ K +H +L+++F D + L + C SLE AR++FD++P ++
Sbjct: 87 LGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCG-----SLEGARRLFDEMPHRDMV 141
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+W ++I Y+ +D + ++F +++ + PNEFTL ++K + G+ IH
Sbjct: 142 SWTSMITGYAQNDRASDALLLFPRMLSDGAE-PNEFTLSSLVKCCGYMASYNCGRQIHAC 200
Query: 150 F-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
++ + +SL+ YA CG L A VF +G K+ VSWN++I+G+ G E+A
Sbjct: 201 CWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEA 260
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
+ L+ M+ E +P E T +LS+C+ LE G W+ +H+ K+ K+
Sbjct: 261 LALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKL 309
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 8/205 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IHA + + S L A + L A +FD++ N +WN LI Y+
Sbjct: 195 RQIHACCWKYGCHSNVFVGSSLVDMYARCGY--LGEAMLVFDKLGCKNEVSWNALIAGYA 252
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLV- 155
E ++ +F+++ Y P EFT ++ + + G+ +H LV
Sbjct: 253 RKGEGEEALALFVRM-QREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVG 311
Query: 156 -ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+L+H YA G + A VF + K DVVS NSM+ G+ + G ++A + + EM
Sbjct: 312 YVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRF 371
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
++P+++T + VL+AC+ R L+ G
Sbjct: 372 GIEPNDITFLSVLTACSHARLLDEG 396
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+I +Q+ D + +KL CA S+ +L YA K+F+ + P+L+ +N +++
Sbjct: 112 QLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKI 171
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y+ + ++F QL + +P+ FT PFV+KA R G+ + G +
Sbjct: 172 YAKRGILRKVLLLFQQLREDG-LWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDL 230
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D + NSLI Y ++ A +F + +D VSWN MISG+V FE AI +REM+
Sbjct: 231 DNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQ 290
Query: 213 VE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
E N KPDE T+V LSAC ++LE G + +++ K
Sbjct: 291 QEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRK 327
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 118/258 (45%), Gaps = 37/258 (14%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + +Q +++ ++ T D Y + L S++E A+K+FD++ + +WN
Sbjct: 210 LRDVRQGEKVRGFIVKTGMDLDNYVYNSLID--MYYELSNVENAKKLFDEMTTRDSVSWN 267
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
+I Y + F ++ P+E T+ + A +G IH
Sbjct: 268 VMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRK 327
Query: 153 DL----VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG--------- 199
+L I N+L+ YA CG L +A +F + K+V+ W SMISG++ G
Sbjct: 328 ELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLF 387
Query: 200 ----------------------FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
F+ A+ L+REM+++ +KPD+ T+V +L+ CA+ LE
Sbjct: 388 DKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALE 447
Query: 238 FGIWVSSHIEKNGIKMDL 255
G W+ ++++N I MD+
Sbjct: 448 QGKWIHGYLDENRITMDV 465
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L AR +FD+ P ++ W +I Y + +F ++ P++FT+ +
Sbjct: 378 GDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIK-PDKFTVVTL 436
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A+ G+ IHG ++ D+V+ +LI Y+ CG + + +F + KD
Sbjct: 437 LTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDT 496
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
SW S+I G G +A+ L+ EME KPD++T + VLSAC+ +E G
Sbjct: 497 ASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEG 550
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 140 FRVGQAIHGMFEDDLVISNSLIHFYA--VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
FR+G E D N L+ F A G+L A +F + + +N M+ + +
Sbjct: 121 FRIG------LEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAK 174
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
G K + L++++ + + PD T VL A RD+ G V I K G+ +D
Sbjct: 175 RGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLD 231
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 28/249 (11%)
Query: 30 PHFLTNQKQLK-------------RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYA 76
P FL+ + QL IHAQ+L + D + ++L ALS +L Y
Sbjct: 24 PKFLSTKHQLLSLLNHCSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYG 83
Query: 77 RKM-----FDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
+ F P WN +IR YSSSD P ++ +F ++ PN T PF++
Sbjct: 84 CSLLFHCHFHSATMP----WNFIIRGYSSSDSPQEAISLFGEMRRRGVR-PNNLTFPFLL 138
Query: 132 KAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
KA A + G+ H + + D+ + N+LI+FY C ++ A VF + ++ +V
Sbjct: 139 KACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTERTLV 198
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
SWN++I+ VE F++AI+ + +M +PDE TMVV+LSACA+ +L G WV S +
Sbjct: 199 SWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQV 258
Query: 247 EKNGIKMDL 255
G+ +++
Sbjct: 259 VGRGMVLNV 267
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 20/210 (9%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L ++ K+ HA + D Y + L + C + ARK+FD++ + L
Sbjct: 144 LATLQEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSC-----KRMSGARKVFDEMTERTLV 198
Query: 90 TWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
+WN +I A + DE I F+ + N + P+E T+ ++ A A +G+ +
Sbjct: 199 SWNAVITACVENFCFDEAIDYFLK----MGNHGFEPDETTMVVILSACAELGNLSLGRWV 254
Query: 147 HGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
H ++ N + + YA GD+ A VF + +K V +W++MI G + GF
Sbjct: 255 HSQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFA 314
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACA 231
+AIEL+ M + P+ VT + VL AC+
Sbjct: 315 NEAIELFTNMMSSPIVPNHVTFIGVLCACS 344
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 30/179 (16%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +F+ + Q +++TW+ +I + ++ +F ++ +SP PN T V+ A +
Sbjct: 286 ARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTNMM-SSPIVPNHVTFIGVLCACS 344
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
G+ + N + Y + K ++ + SM+
Sbjct: 345 HA----------GLVDKSYHYFNLMERVYGI---------------KPMMIHYGSMVDVL 379
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
G ++A EL M VE PD + +LSAC+ RD+ G V+ K ++++
Sbjct: 380 GRAGQVKEAYELIMSMPVE---PDPIVWRTLLSACS-GRDVNGGAEVAEEARKRLLELE 434
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF---DQI---PQPNLYTWNTL 94
+IH+ +L +P +K S F+++ YA + DQ P + + +NTL
Sbjct: 140 QIHSLILKLGLHHNPLVLTKF--AATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTL 197
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
IRA++ + + F + PN+FT PFV+KA A ++ +G A+H
Sbjct: 198 IRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFG 257
Query: 150 FEDDLVISNSLIHFYAVC------GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
FE+D + N+L+H Y C G ++ A VF KD V+W++MI G+ G +
Sbjct: 258 FEEDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVTWSAMIGGYARAGNSAR 316
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
A+ L+REM+V V PDE+TMV VLSACA LE G W+ S+IE+ I
Sbjct: 317 AVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNI 364
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 24/241 (9%)
Query: 14 HPNPTTLTVNNGHQRH---------PHFLTNQKQLKR------IHAQMLSTDFFFDPYSA 58
H P L N +RH P L + R +HA M+ F DP+
Sbjct: 206 HSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVR 265
Query: 59 SKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
+ L + C S A+K+FD+ P + TW+ +I Y+ + ++ +F ++
Sbjct: 266 NTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQ 325
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDL 170
P+E T+ V+ A A +G+ + E + + N+LI +A CGD+
Sbjct: 326 VTG-VCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDV 384
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
A VF + + +VSW SMI G G +A+ ++ EM + V PD+V + VLSAC
Sbjct: 385 DRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSAC 444
Query: 231 A 231
+
Sbjct: 445 S 445
>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Glycine max]
Length = 666
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 7/221 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
+ + KR+HA +L+ F SKL T A +S YA +FD++ QP L++WN +
Sbjct: 26 SHSETKRLHALILTLGIFSSSNLCSKLATTYAQCHHAS--YASHLFDKLSQPCLFSWNAM 83
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
+R Y P + +F++++ + P++FT P VIKA VG IHG
Sbjct: 84 MRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFG 143
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
++ D + N+L+ Y G+ A VF + ++ V+SWN+MI+G+ E A+ +Y
Sbjct: 144 YDSDTFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYG 203
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
M V+PD T+V VL AC +++E G V + +++ G
Sbjct: 204 RMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKG 244
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 94/180 (52%), Gaps = 10/180 (5%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+ M D+ ++ TW TLI Y + + +S ++ ++ PN ++ ++ A
Sbjct: 272 AKGMDDK----DVVTWTTLINGYILNGDA-RSALMLCGMMQCEGVKPNSVSIASLLSACG 326
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
V G+ +H E ++++ +LI+ YA C ++Y VF+ KK WN+
Sbjct: 327 SLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNA 386
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
++SGF++ +AIEL+++M V++V+PD T +L A A DL+ + + ++ ++G
Sbjct: 387 LLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSG 446
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 90/171 (52%), Gaps = 6/171 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A+ +FD + + + +WNT+I Y ++ + ++ +++ + P+ T+ V+ A
Sbjct: 165 EAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMM-DVGVEPDCATVVSVLPA 223
Query: 134 AARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+G+ +H + ++ ++V+ N+L+ Y CG + A+ + + KDVV+W
Sbjct: 224 CGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTW 283
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++I+G++ G A+ L M+ E VKP+ V++ +LSAC L G
Sbjct: 284 TTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHG 334
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 10/199 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +HA + + + L A +L Y K+F + WN L+ +
Sbjct: 335 KCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSY--KVFMGTSKKRTAPWNALLSGFI 392
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
+ ++ +F Q++ P+ T ++ A A + IH F L
Sbjct: 393 QNRLAREAIELFKQMLVKDVQ-PDHATFNSLLPAYAILADLQQAMNIHCYLIRSGFLYRL 451
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIG--KKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+++ L+ Y+ CG L A+ +F +I KD++ W+++I+ + + G + A++L+ +M
Sbjct: 452 EVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKLFNQMV 511
Query: 213 VENVKPDEVTMVVVLSACA 231
VKP+ VT VL AC+
Sbjct: 512 QSGVKPNHVTFTSVLHACS 530
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 120/222 (54%), Gaps = 7/222 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH Q++ + D + A+ L C+ S ++ AR +FD++P NL TW++++ YS
Sbjct: 69 KIIHGQIIVSGLQSDTFLANILINVCSKS--DRVDNARVVFDKMPHKNLITWSSMVSMYS 126
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
++ M+F+ L S PNEF L VI+A + G +HG F+ D+
Sbjct: 127 QQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDV 186
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ SLI FY+ G++ A VF + +K V+W ++I+G+ + G ++EL+ +M
Sbjct: 187 YVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRET 246
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
NV PD + VLSAC+ LE G + +++ + G +MD++
Sbjct: 247 NVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVS 288
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 8/209 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q +++HA + + D + + L A S L A+K+FD + + N+ ++N +I
Sbjct: 370 EQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNL--LIDAKKVFDVMAEQNVISYNAMIE 427
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---D 153
YSS ++ ++ +F ++ PNEFT +I AA+ R GQ H D
Sbjct: 428 GYSSQEKLSEALELFHEMRVRLQK-PNEFTFAALITAASNLASLRHGQQFHNQLVKMGLD 486
Query: 154 LV--ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++N+L+ YA CG + A +F +DVV WNSMIS + G E+A+ ++REM
Sbjct: 487 FCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREM 546
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGI 240
E ++P+ VT V VLSAC+ +E G+
Sbjct: 547 MKEGIQPNYVTFVAVLSACSHAGRVEDGL 575
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 8/219 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H ++ + F D Y + L S ++E AR +FDQ+ + TW T+I Y+
Sbjct: 172 QLHGFVVRSGFDQDVYVGTSLID--FYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTK 229
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLV 155
S +F Q+ + P+ + + V+ A + G+ IH E D+
Sbjct: 230 CGRSAVSLELFAQM-RETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVS 288
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ N LI FY C + +F + K+++SW +MISG+++ F +A++L+ EM
Sbjct: 289 VVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLG 348
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
KPD VL++C + LE G V ++ K ++ D
Sbjct: 349 WKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESD 387
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 28/249 (11%)
Query: 30 PHFLTNQKQLK-------------RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYA 76
P FL+ + QL IHAQ+L + D + ++L ALS +L Y
Sbjct: 24 PKFLSTKHQLLSLLKHCSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYG 83
Query: 77 RKM-----FDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
+ F P WN +IR YSSSD P ++ +F ++ PN T PF++
Sbjct: 84 CSLLFHCHFHSATMP----WNFIIRGYSSSDSPQEAISLFGEMRRRGVR-PNNLTFPFLL 138
Query: 132 KAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
KA A + G+ H + + D+ + N+LI+FY C ++ A VF + ++ +V
Sbjct: 139 KACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMTERTLV 198
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
SWN++I+ VE F++AI+ + +M +PDE TMVV+LSACA+ +L G WV S +
Sbjct: 199 SWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQV 258
Query: 247 EKNGIKMDL 255
G+ +++
Sbjct: 259 VGRGMVLNV 267
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 14/207 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L ++ K+ HA + D Y + L + + ARK+FD++ + L +WN
Sbjct: 144 LATLQEGKQFHAIAIKCGLDLDVYVRNTLIN--FYGSCKRMSGARKVFDEMTERTLVSWN 201
Query: 93 TLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+I A + DE I F+ + N + P+E T+ ++ A A +G+ +H
Sbjct: 202 AVITACVENFCFDEAIDYFLK----MGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQ 257
Query: 150 FEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
++ N + + YA GD+ A VF + +K V +W++MI G + GF +A
Sbjct: 258 VVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEA 317
Query: 205 IELYREMEVENVKPDEVTMVVVLSACA 231
IEL+ M + P+ VT + VL AC+
Sbjct: 318 IELFTNMTSSPIVPNHVTFIGVLCACS 344
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +F+ + Q +++TW+ +I + ++ +F + +SP PN T V+ A +
Sbjct: 286 ARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTNMT-SSPIVPNHVTFIGVLCACS 344
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
G+ + N + Y + K ++ + SM+
Sbjct: 345 HA----------GLVDKSYHYFNLMERVYGI---------------KPMMIHYGSMVDVL 379
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
G ++A EL M VE PD + +LSAC+ RD+ G V+ K ++++
Sbjct: 380 GRAGQVKEAYELIMSMPVE---PDPIVWRTLLSACS-GRDVNGGAEVAEEARKRLLELE 434
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 120/222 (54%), Gaps = 7/222 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH Q++ + D + A+ L C+ S ++ AR +FD++P NL TW++++ YS
Sbjct: 47 KIIHGQIIVSGLQSDTFLANILINVCSKS--DRVDNARVVFDKMPHKNLITWSSMVSMYS 104
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
++ M+F+ L S PNEF L VI+A + G +HG F+ D+
Sbjct: 105 QQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDV 164
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ SLI FY+ G++ A VF + +K V+W ++I+G+ + G ++EL+ +M
Sbjct: 165 YVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRET 224
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
NV PD + VLSAC+ LE G + +++ + G +MD++
Sbjct: 225 NVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVS 266
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 8/206 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH ++ D ++ S L S S ++ AR +F+++ + ++ WN + Y+
Sbjct: 452 KQIHGLIIKFGVSLDLFAGSALID--VYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYT 509
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---DLV- 155
E ++ ++ L + S PNEFT +I AA+ R GQ H D
Sbjct: 510 QHLENEEALKLYSTLQF-SRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCP 568
Query: 156 -ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++N+L+ YA CG + A +F +DVV WNSMIS + G E+A+ ++REM E
Sbjct: 569 FVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKE 628
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGI 240
++P+ VT V VLSAC+ +E G+
Sbjct: 629 GIQPNYVTFVAVLSACSHAGRVEDGL 654
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 8/219 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H ++ + F D Y + L S ++E AR +FDQ+ + TW T+I Y+
Sbjct: 150 QLHGFVVRSGFDQDVYVGTSLID--FYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTK 207
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLV 155
S +F Q+ + P+ + + V+ A + G+ IH E D+
Sbjct: 208 CGRSAVSLELFAQM-RETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVS 266
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ N LI FY C + +F + K+++SW +MISG+++ F +A++L+ EM
Sbjct: 267 VVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLG 326
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
KPD VL++C + LE G V ++ K ++ D
Sbjct: 327 WKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESD 365
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 14/224 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+IHA +L D + L +T C + ++ RK+FDQ+ N+ +W T+I
Sbjct: 250 KQIHAYVLRRGTEMDVSVVNVLIDFYTKC-----NRVKAGRKLFDQMVVKNIISWTTMIS 304
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + ++ +F ++ + P+ F V+ + G+ +H E
Sbjct: 305 GYMQNSFDWEAMKLFGEM-NRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLE 363
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + N LI YA L A VF ++ +++V+S+N+MI G+ +A+EL+ EM
Sbjct: 364 SDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEM 423
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V P +T V +L A LE + I K G+ +DL
Sbjct: 424 RVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDL 467
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 18/223 (8%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQP-NLYTW 91
K+ K IH+++ F L AL T L+ AR +F+++ Q N+Y W
Sbjct: 361 KEGKAIHSRVFECGF-------QSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCW 413
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
+I AY+ + ++ ++ Q+V PNE+T V+ A + G IHG E
Sbjct: 414 TAMISAYAQAGHTQEALELYDQMVAEGTR-PNEYTFSNVLAACSSSGDLEAGMKIHGHVE 472
Query: 152 D-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+ ++ + N+L+ YA CG L +A F G+KD+VSWN+MI + + G +A++
Sbjct: 473 NSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALD 532
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
LY+ M + V PDEVT+ LSACA L+ G + S + KN
Sbjct: 533 LYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKN 575
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 118/226 (52%), Gaps = 13/226 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSAS--KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
K IHA+++S++ D ++ ++ C + AR+ F++I ++ W +L+ A
Sbjct: 264 KAIHARIVSSNMESDFVGSALINMYARCG-----DVSSARQAFEKIQNKHVVCWTSLMTA 318
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFE---DD 153
Y + ++ ++ ++ + + + T + A A + G+AIH +FE
Sbjct: 319 YVQTCHYREALDLYGRMDHEGVH-ADGVTYVTALGACASLGALKEGKAIHSRVFECGFQS 377
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMI-GKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
LV+ +L+ YA CG+L A VF + K++V W +MIS + + G ++A+ELY +M
Sbjct: 378 LVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMV 437
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
E +P+E T VL+AC+ DLE G+ + H+E + + ++ +
Sbjct: 438 AEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQ 483
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 104/206 (50%), Gaps = 9/206 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IH + +++ + + L T A SLE A+ F+ + +L +WN +I AY+
Sbjct: 466 KIHGHVENSELASNVAVQNALVTMYA--KCGSLELAKSAFEASGRKDLVSWNAMIGAYAQ 523
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FEDDL 154
++ ++ Q + + P+E T+ + A A ++G+ IH F L
Sbjct: 524 HGLGREALDLY-QTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSL 582
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ +L++ Y CG L A +F +G++DV+SW +M S + + G ++ ++LY EM +
Sbjct: 583 MVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLH 642
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGI 240
++P+E+T +L C+ L G+
Sbjct: 643 GIRPNEITFTSILVGCSHAGLLARGV 668
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 10/187 (5%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+E ARK+FD I + +W ++I +Y+++ ++ ++ Q+ + P+ T
Sbjct: 195 GSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQ-PDSITFTSA 253
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A + V G+AIH E D V S +LI+ YA CGD++ A F I K V
Sbjct: 254 LLACTKLVD---GKAIHARIVSSNMESDFVGS-ALINMYARCGDVSSARQAFEKIQNKHV 309
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V W S+++ +V+ + +A++LY M+ E V D VT V L ACA L+ G + S
Sbjct: 310 VCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSR 369
Query: 246 IEKNGIK 252
+ + G +
Sbjct: 370 VFECGFQ 376
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 17/207 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLI 95
K +H +L T + + + +++ C + AR F + +N ++
Sbjct: 62 KLVHRHLLRTGHGRNQFLGNLLIQMYGNCG-----EIHLARAAFQNFASIKAVACYNQML 116
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG------- 148
AY + ++ ++ ++ P P++ T V+ + + R + IH
Sbjct: 117 SAYGKNGLWNRALELYHRMCEEGPE-PDKITYFIVLGSCSAVGSLREAREIHASIIEAPQ 175
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ D+L + N+L++ Y CG + A VF I +D VSW SMIS + GF ++A++LY
Sbjct: 176 IIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLY 235
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRD 235
++M+ + ++PD +T L AC K D
Sbjct: 236 QQMDADGIQPDSITFTSALLACTKLVD 262
>gi|91806812|gb|ABE66133.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 230
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 116/214 (54%), Gaps = 16/214 (7%)
Query: 18 TTLTVNNGHQRHPHFLTNQK-----QLKRIHAQMLSTDFFFDPYSASKLFTPCAL-STFS 71
+ + +N +HP Q LK IH +L T D + AS+L C STF+
Sbjct: 2 SNIVLNTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFN 61
Query: 72 S----LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
L YA +F QI PNL+ +N LIR +S+ EP ++F + Q++ S +P+ T
Sbjct: 62 KPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQML-KSRIWPDNITF 120
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
PF+IKA++ VG+ H F++D+ + NSL+H YA CG +A A +F +G
Sbjct: 121 PFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGF 180
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+DVVSW SM++G+ + G E A E++ EM N+
Sbjct: 181 RDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNL 214
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 115/212 (54%), Gaps = 5/212 (2%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
N +LK+I A ++ P ++ + CA+S SL YA+ +F I P WN+
Sbjct: 20 NNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNS 79
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IR ++ S P+Q+ + +++++S P+ FT F +KA R + + +HG
Sbjct: 80 IIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGSIIRT 139
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+E D+V+ L+ Y G + +A VF + ++D+V+WN+MIS + + G+ ++A+ +Y
Sbjct: 140 GYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVY 199
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
M ENV D T+V +LS+C+ L G+
Sbjct: 200 DYMRNENVGVDGFTLVGLLSSCSHVGALNMGV 231
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 101/209 (48%), Gaps = 9/209 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+ + +H ++ T + D + L +E AR +FD +P+ +L WN +I
Sbjct: 127 KKCEEVHGSIIRTGYERDVVVCTGLVR--CYGRNGCVEIARMVFDNMPERDLVAWNAMIS 184
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---- 152
YS + ++ ++ + N + FTL ++ + + +G +H + +
Sbjct: 185 CYSQAGYHQEALRVY-DYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLL 243
Query: 153 -DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ + N+LI YA CG L A VF + +D +WNSMI GF GF ++AI + +M
Sbjct: 244 RNVFVGNALIDMYAKCGSLDGALEVFNGM-PRDAFTWNSMIVGFGVHGFGDEAIYFFNQM 302
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGI 240
V+P+ + + +L C+ + +E G+
Sbjct: 303 LEAGVRPNSIAFLGLLCGCSHQGLVEEGV 331
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 124/247 (50%), Gaps = 12/247 (4%)
Query: 6 TPVISIPRH-PNPTTLTVNNGHQRHPHFLTNQ----KQLKRIHAQMLSTDFFFDPYSASK 60
VI+ P H P+ + + + H R N QLK++HAQ + T P +
Sbjct: 4 AAVIAPPSHLPHAISNSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPNTFFL 63
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS-SSDEPIQSFMIFLQLVYNSP 119
S+ L YA ++F QI PN + WN LIRA + S+D + ++ +++
Sbjct: 64 YSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGS 123
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAY 174
++ T PFV+KA A G+ IH F+ D+ I+NSL+HFYA C L A
Sbjct: 124 VMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAK 183
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
VF + ++ +VSWN +I FV G F+ A+ L+ EM+ + +PD T+ + +ACA
Sbjct: 184 GVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQ-KFFEPDGYTIQSIANACAGMG 242
Query: 235 DLEFGIW 241
L G+W
Sbjct: 243 SLSLGMW 249
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 13/200 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IHAQ+L F D Y + L A T L++A+ +FD++ + +L +WN +I A+
Sbjct: 148 EQIHAQILKLGFDSDVYINNSLVHFYA--TCDRLDFAKGVFDRMSERSLVSWNVVIDAFV 205
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----GMFE---- 151
E + +F ++ + P+ +T+ + A A +G H F+
Sbjct: 206 RFGEFDAALNLFGEM--QKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRV 263
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+D++++ SL+ Y CG L +A +F + K+DV SWNSMI GF G A+E + M
Sbjct: 264 NDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCM 323
Query: 212 -EVENVKPDEVTMVVVLSAC 230
E + P+ +T V VLSAC
Sbjct: 324 VRTEKLMPNAITFVGVLSAC 343
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 22/187 (11%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
FL + R++ +L+T S ++ C SLE A ++F ++P+ ++ +W
Sbjct: 253 FLLKKFDADRVNDVLLNT-------SLVDMYCKCG-----SLELALQLFHRMPKRDVTSW 300
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
N++I +S+ E + F +V PN T V+ A G+ +
Sbjct: 301 NSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMV 360
Query: 152 DDLVISNSLIHFYAVCGDLAMAY-------CVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ I L H+ + LA A V M + D+V W S++ +
Sbjct: 361 TEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQ---NAG 417
Query: 205 IELYREM 211
+EL EM
Sbjct: 418 VELSEEM 424
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 119/218 (54%), Gaps = 8/218 (3%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
H+ +L + D + L T S L AR++FD+I + +L +WN++I YS
Sbjct: 149 HSGVLKSGLCADGHVRHSLIT--MYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMG 206
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDL--VIS 157
+ +F ++ ++ + P+E TL ++ A +G I G E DL +
Sbjct: 207 YAGDAVGLFGEM-RDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVG 265
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
++LI Y CGDL+ A VF + KKDVV+WN+MI+G+ + G ++AI L+ M V
Sbjct: 266 SALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVN 325
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
PD++T+V VLSACA L+FG W+ ++ + G++ D+
Sbjct: 326 PDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDI 363
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 34 TNQKQLKRIHAQML-----STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNL 88
T+ K L++IH QM+ +F + K F +L +F QIP PN
Sbjct: 42 TSTKSLQQIHTQMIINAIHKPNFLLHRFIDLKDFNNASL-----------LFSQIPYPNE 90
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF---PNEFTLPFVIKAAARPVQFRVGQA 145
Y +N +IR +++ Q F + ++ Y F PN FT PFV A A + GQ
Sbjct: 91 YAFNIMIRGLTTT---WQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQC 147
Query: 146 IH-GMFEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
H G+ + L + +SLI Y+ CG+L A VF I +KD+VSWNSMISG+ G+
Sbjct: 148 AHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGY 207
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
A+ L+ EM +PDE+T+V +L AC DL G W+ + +N +MDL
Sbjct: 208 AGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVEN--EMDLN 261
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTL 127
L AR++FD++ + ++ TWN +I Y+ SDE I I + S P++ TL
Sbjct: 276 GDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAI----ILFSGMRESGVNPDKITL 331
Query: 128 PFVIKAAARPVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A G+ A ++D+ +S +LI YA CG L A VF + +
Sbjct: 332 VGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQ 391
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVEN--VKPDEVTMVVVLSAC 230
K+ VSWN+MIS G ++++ L++ M E V+P++++ + VLSAC
Sbjct: 392 KNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSAC 441
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 40/206 (19%)
Query: 44 AQMLSTDF--FFDPYSASK-----LFTPCAL----STFSSLEYARKMFDQIPQPNLYTWN 92
A + + DF + D Y++ + ++ AL + SL+ A ++F+ +PQ N +WN
Sbjct: 339 ASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWN 398
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVY-NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
+I A + P +S +F ++ PN+ + V+ A G+ + +
Sbjct: 399 AMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMS 458
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + H + LA A V +W+ F EK E
Sbjct: 459 SSFGLVPKIEHHSCMVDLLARAGHVH--------EAWD----------FIEKMPE----- 495
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLE 237
KPDEV + +L AC K+R+++
Sbjct: 496 -----KPDEVVLGALLGACQKRRNVD 516
>gi|297827165|ref|XP_002881465.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327304|gb|EFH57724.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 112/216 (51%), Gaps = 10/216 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K L +IH Q+ + D + S+L +LS L +AR + TWN L R
Sbjct: 27 KHLLQIHGQIHVSSLQNDSFIISELIRVSSLSHTKDLAFARTLLLHSSDSTPSTWNMLTR 86
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI------HGMF 150
YSSSD P++S ++ ++ PN+ T PF++KA A + G+ I HG F
Sbjct: 87 GYSSSDTPVESIWVYSEM-KRRRIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHG-F 144
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ D+ + N+LIH Y C + A VF + +++VVSWNS+++ VE G F +E + E
Sbjct: 145 DSDVYVGNNLIHLYGSCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKFNLVVECFFE 204
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
M PDE TMVV+LSAC +L G V S +
Sbjct: 205 MIGRQFCPDETTMVVLLSACGG--NLSLGKLVHSQV 238
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 103/201 (51%), Gaps = 17/201 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++I ++L F D Y + L + C ++ ARK+FD++ + N+ +WN+++
Sbjct: 133 RQIQVEVLKHGFDSDVYVGNNLIHLYGSCKKTS-----DARKVFDEMTERNVVSWNSIMT 187
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
A + + F +++ + P+E T+ ++ A +G+ +H E
Sbjct: 188 ALVENGKFNLVVECFFEMI-GRQFCPDETTMVVLLSACGG--NLSLGKLVHSQVMVRELE 244
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + +L+ YA G L A VF + K+V +W++MI G + GF E+A++L+ +M
Sbjct: 245 LNCRLGTALVDMYAKSGGLKYARLVFERMADKNVWTWSAMIVGLAQYGFAEEALQLFSKM 304
Query: 212 EVE-NVKPDEVTMVVVLSACA 231
E +V+P+ VT + VL AC+
Sbjct: 305 MKESSVRPNYVTFLGVLCACS 325
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 146 IHGM-----FEDDLVISNSLIHFYAVC--GDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
IHG ++D I + LI ++ DLA A + + +WN + G+
Sbjct: 32 IHGQIHVSSLQNDSFIISELIRVSSLSHTKDLAFARTLLLHSSDSTPSTWNMLTRGYSSS 91
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++I +Y EM+ +KP+++T +L ACA L G + + K+G D+
Sbjct: 92 DTPVESIWVYSEMKRRRIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDSDV 148
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 122/239 (51%), Gaps = 38/239 (15%)
Query: 56 YSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
Y+ SKL C L+ F L YA +F I +PN +WNT+IR ++ S +PI + +++ +
Sbjct: 10 YALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYM 69
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-------------------------GM 149
+ + PN +T PF+ K+ A+ + G+ IH G+
Sbjct: 70 I-SLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGI 128
Query: 150 FED-----------DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
ED D+V ++I YA G++ A +F I KDVVSWN+MISG+ E
Sbjct: 129 VEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEI 188
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
G +++A+EL+ EM +VKPDE TM VLS C ++E G + S I+ +G +L
Sbjct: 189 GRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKL 247
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 103/186 (55%), Gaps = 6/186 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
++ +++ A+KMFD+IP ++ +WN +I Y+ ++ +F +++ P+E T+
Sbjct: 155 ASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMM-KMDVKPDESTM 213
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ +G+ IH F +L + N+LI Y+ CG++ A+ +F +
Sbjct: 214 ATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQY 273
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
KDV+SWN++I G+ ++A+ +++EM P++VTM+ +L ACA ++ G W+
Sbjct: 274 KDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWI 333
Query: 243 SSHIEK 248
+I+K
Sbjct: 334 HVYIDK 339
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 13/178 (7%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C +E A +F+ + ++ +WNTLI Y+ + ++ ++F +++
Sbjct: 254 LYSKCG-----EMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGET 308
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL--VISN-----SLIHFYAVCGDLAMA 173
PN+ T+ ++ A A +G+ IH + L +I+N SLI YA CG++ A
Sbjct: 309 -PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAA 367
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
VF I K + S N+MI GF G + A +L M+ + ++PD++T V +LSAC+
Sbjct: 368 NQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACS 425
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 131/256 (51%), Gaps = 43/256 (16%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKM-FDQIPQPNLYTWNTLIR 96
+LK+IHA+ML + DPY+ +K + + S YA + F+ +P+ + WN +IR
Sbjct: 26 ELKQIHARMLKSGLLQDPYAMTKFLS--FCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIR 83
Query: 97 AYSSSDEPIQSFMIFLQ-LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
S SD+P +S +++ + L ++P+ N +T PF++KA + F+ IH +
Sbjct: 84 GLSCSDQPDRSLLLYHRMLCCSAPH--NAYTFPFLLKACSNLSAFQETTQIHAHITKFGY 141
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS-------------------- 190
D+ NSLI+ YAV G+ A+ +F I + D VSWNS
Sbjct: 142 GHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRK 201
Query: 191 ------------MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
MISG+V+ G ++A++L+ EM+ NV PD V++ LSAC++ LE
Sbjct: 202 MPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQ 261
Query: 239 GIWVSSHIEKNGIKMD 254
G W+ S+ K ++D
Sbjct: 262 GKWIHSYANKTRTRID 277
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 38/249 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ +IHA + + D Y+ + L A++ + ++A +FD+I +P+ +WN++I+
Sbjct: 127 QETTQIHAHITKFGYGHDIYAVNSLINSYAVT--GNFKHAHLLFDRIQEPDAVSWNSVIK 184
Query: 97 AYSSSDEPIQSFMIF----------------------------LQLVY---NSPYFPNEF 125
Y + E + +F LQL + NS P+
Sbjct: 185 GYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNV 244
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+L + A ++ G+ IH D V+ LI YA CG++ A VF +
Sbjct: 245 SLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNM 304
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
K V W ++ISG+ G +AI + EM+ VKP+ +T VL+AC+ +E G
Sbjct: 305 KTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGK 364
Query: 241 WVSSHIEKN 249
V + IE++
Sbjct: 365 SVFNTIERD 373
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 42/256 (16%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N +LK+IHA ++ + +K+ C + + EYA +F + PN + +N +
Sbjct: 26 NIVELKKIHAHIVKFSLSQSSFLVTKMVDVC--NHYGETEYANLLFKGVADPNAFLYNAM 83
Query: 95 IRAYSSSDEPIQSFMIFLQLVYN----SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
IRAY + + + ++ Q++ N +P FP++FT PFV+K+ A + + +G+ +HG
Sbjct: 84 IRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHV 143
Query: 151 -----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG------ 199
+ + V+ NSL+ Y C L A+ VF + ++D VSWN++ISG V G
Sbjct: 144 FKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRAR 203
Query: 200 -FFEK------------------------AIELYREMEVENVKPDEVTMVVVLSACAKKR 234
FE+ A+E +R M++ ++PDE+++V VL CA+
Sbjct: 204 AIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLG 263
Query: 235 DLEFGIWVSSHIEKNG 250
LE G W+ + +K G
Sbjct: 264 ALELGKWIHIYADKAG 279
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 90/178 (50%), Gaps = 10/178 (5%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTL 127
+ AR +F+++ +++W ++ Y+ + F +Q+V P+E +L
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMV---GIEPDEISL 252
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A+ +G+ IH F ++ + N+LI YA CG + +F + +
Sbjct: 253 VSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKE 312
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+DV+SW++MI G G +AIEL++EM+ ++P +T V +L+ACA L G+
Sbjct: 313 RDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGL 370
>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
[Vitis vinifera]
Length = 461
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 113/192 (58%), Gaps = 7/192 (3%)
Query: 72 SLEYARKMFDQIP-QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+E+AR +FD++P + ++ WN++IRAY+ S PI++ +F Q+ P+ FT PFV
Sbjct: 48 SIEFARLVFDRLPIRAPIFAWNSIIRAYTKSSVPIEAVKLFSQM-QRVGLKPDNFTYPFV 106
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+KA R + G A+H + F+ D + N+L+ YA + +A VF + +DV
Sbjct: 107 VKACGRSLVVGAGGAMHSIIVKAGFDSDRYVGNTLLRMYANLNAVGLARRVFNEMTVRDV 166
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VSW+SMI+G+V A+ ++R M + N KP+ VT+V +LSAC + ++ G + S+
Sbjct: 167 VSWSSMIAGYVACNCQADALMVFRHMMLANEKPNSVTLVSLLSACTRLLNIGVGESIHSY 226
Query: 246 IEKNGIKMDLTF 257
I N I +D+
Sbjct: 227 IIVNCIGLDVAL 238
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 101/195 (51%), Gaps = 8/195 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H+ ++ F D Y + L A +++ AR++F+++ ++ +W+++I Y +
Sbjct: 122 MHSIIVKAGFDSDRYVGNTLLRMYA--NLNAVGLARRVFNEMTVRDVVSWSSMIAGYVAC 179
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVI 156
+ + M+F ++ + PN TL ++ A R + VG++IH D+ +
Sbjct: 180 NCQADALMVFRHMMLANEK-PNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCIGLDVAL 238
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+++ Y+ CG + A VF + +K++ SW MISG + E AI L+ +ME +
Sbjct: 239 GTAILEMYSKCGHIEKALKVFNSLTEKNLQSWTIMISGLADHSHGEDAISLFTQMEQTGL 298
Query: 217 KPDEVTMVVVLSACA 231
+PD ++ +LSAC+
Sbjct: 299 QPDSMSFSEILSACS 313
>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 787
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 103/182 (56%), Gaps = 5/182 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD + P+L+ WN +I+ Y + +F ++ + +P+++T P VIKA +
Sbjct: 136 ARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACS 195
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
VG IHG F ++ + NSL+ Y CG + +A VF ++ K+ VVSWN+
Sbjct: 196 VMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNT 255
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG+ + G E+A+ ++ M V+PD T+V L +C ++LE GI V ++KN
Sbjct: 256 MISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNH 315
Query: 251 IK 252
++
Sbjct: 316 LQ 317
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 105/206 (50%), Gaps = 14/206 (6%)
Query: 42 IHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
IH + L + F F S ++ C + AR++F+ + + ++ +WNT+I +
Sbjct: 206 IHGRALVSGFSSNMFVQNSLLAMYMNCG-----KVGLARQVFNVMLKRSVVSWNTMISGW 260
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ P ++ +F ++ ++ P+ T+ + + + +G +H + ++
Sbjct: 261 FQNGRPEEALAVFNSMM-DARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEK 319
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + N+L+ Y+ CG + A VF +KDV++W SMI+G++ G + A+ L M++
Sbjct: 320 IEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQL 379
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFG 239
+ V P+ VT+ +LSACA L+ G
Sbjct: 380 DGVVPNAVTLASLLSACASLCCLKQG 405
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 90/188 (47%), Gaps = 6/188 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A +F + + ++ TW ++I Y + +S + + PN TL
Sbjct: 331 SRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNA-KSALALCPAMQLDGVVPNAVTL 389
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ A A + G+++H + D+++ +LI YA C ++ ++ VF
Sbjct: 390 ASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSM 449
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
K V WN+++SG + +A+ L++ M +E V+ + T V+ A A DL+ + +
Sbjct: 450 KRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNL 509
Query: 243 SSHIEKNG 250
S++ ++G
Sbjct: 510 HSYLVRSG 517
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 10/211 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQ K +HA ++ D + L A +++ Y+ ++F + WN L+
Sbjct: 403 KQGKSLHAWVMRKKLDSDVLVVTALIDMYA--KCNAVSYSFQVFAKTSMKRTVPWNALLS 460
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
++ ++ +F ++ N T VI A A + +H F
Sbjct: 461 GLIHNELAREAVGLFKSMLIEEVE-ANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFI 519
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMI--GKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ + LI Y+ CG L A+ +F I +KD++ W+ +I+G+ G E A+ L+
Sbjct: 520 SKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFN 579
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+M ++P+E+T VL AC+ + ++ G+
Sbjct: 580 QMVHSGMQPNEITFTSVLHACSHRGLVDDGL 610
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVT 222
YA CG + +A +F + + WN++I +V+ GF A+ ++ M PD+ T
Sbjct: 127 YAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYT 186
Query: 223 MVVVLSACAKKRDLEFGIWV 242
+V+ AC+ L G+ +
Sbjct: 187 FPLVIKACSVMSMLNVGVLI 206
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 14/227 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFS---SLEYARKMFDQIPQPNLYTWNTLIR 96
+ IH Q + FD A+ C L+ ++ S+E AR++FD++ + ++ +W I
Sbjct: 146 REIHFQAMQAGLLFDVKVAN-----CILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIG 200
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----E 151
Y+ +F IF Q + PN T V+ A + P + G+A+H E
Sbjct: 201 GYADCGRSETAFEIF-QKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHE 259
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + +L+ YA CG VF + +D+++WN+MI G EGG++E+A E+Y +M
Sbjct: 260 SDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQM 319
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ E V P+++T V++L+AC L +G + S + K G D+ +
Sbjct: 320 QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQ 366
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 110/223 (49%), Gaps = 14/223 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H+++L+ D + K++ C S + R++F+++ +L WNT+I
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCG-----SYKDCRQVFEKLVNRDLIAWNTMIG 301
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ ++ ++ Q+ PN+ T ++ A G+ IH F
Sbjct: 302 GLAEGGYWEEASEVYNQM-QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFT 360
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ + N+LI Y+ CG + A VF + +KDV+SW +MI G + GF +A+ +Y+EM
Sbjct: 361 SDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEM 420
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ V+P+ VT +L+AC+ LE+G + + + G+ D
Sbjct: 421 QQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATD 463
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 8/205 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+RIH Q++ D + + L S S++ AR++FD++ Q ++ +N +I Y+
Sbjct: 449 RRIHQQVVEAGLATDAHVGNTLVN--MYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYA 506
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
+ + ++ +F +L P++ T ++ A A + IH G F D
Sbjct: 507 AHNLGKEALKLFDRL-QEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDT 565
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+L+ YA CG + A VF + K++V+SWN++I G + G + A++L+ M++E
Sbjct: 566 SVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKME 625
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
VKPD VT V +LSAC+ LE G
Sbjct: 626 GVKPDIVTFVSLLSACSHAGLLEEG 650
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 112/216 (51%), Gaps = 8/216 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH+++ F D + L + S S++ AR +FD++ + ++ +W +I +
Sbjct: 348 KEIHSRVAKAGFTSDIGVQNALIS--MYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLA 405
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
S ++ ++ Q + + PN T ++ A + P G+ IH D
Sbjct: 406 KSGFGAEALTVY-QEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDA 464
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+L++ Y++CG + A VF + ++D+V++N+MI G+ ++A++L+ ++ E
Sbjct: 465 HVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 524
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+KPD+VT + +L+ACA LE+ + + + K G
Sbjct: 525 GLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGG 560
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIG--KKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
N+LI+ Y CG + A V+ + ++ V SWN+M+ G+++ G+ EKA++L R+M+
Sbjct: 62 NALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHG 121
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG 239
+ PD T++ LS+C LE+G
Sbjct: 122 LAPDRTTIMSFLSSCKSPGALEWG 145
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 118/204 (57%), Gaps = 10/204 (4%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
LK+IHA M+ F + + +L +++ ++ YA ++F I +P+ + WNT+IR
Sbjct: 29 LKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGS 88
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ S P+ + ++ Q+ N P++FT PFV+KA R ++G +HG FE +
Sbjct: 89 AQSPSPLNAISLYSQM-ENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESN 147
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ N+LI+F+A CGDLA+A +F K+DVV+W+++ +G+ G A +L+ EM V
Sbjct: 148 TFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPV 207
Query: 214 ENVKPDEVTMVVVLSACAKKRDLE 237
+ D V+ V+++ AK+ ++E
Sbjct: 208 K----DLVSWNVMITGYAKRGEME 227
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E ARK+FD++P+ ++ TWN +I Y Q+ +F ++ + P+E T+ +
Sbjct: 224 GEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEM-RSVGELPDEVTMLSL 282
Query: 131 IKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+ A GQ IH G + +++ N+LI YA CG + A VF + +KD
Sbjct: 283 LSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKD 342
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
V +WNS++ G G EK+I L+ EM ++PDE+T V VL AC+ +E G
Sbjct: 343 VSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEG 397
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 35/182 (19%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L AR +FD + ++ W+ L Y+ E + +F ++
Sbjct: 162 GDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEM---------------- 205
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
PV+ DLV N +I YA G++ A +F + K+DVV+WN+
Sbjct: 206 ------PVK-------------DLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNA 246
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI+G+V G ++A+E++ EM PDEVTM+ +LSAC DL+ G + I + G
Sbjct: 247 MIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMG 306
Query: 251 IK 252
+
Sbjct: 307 FR 308
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
A+ G +A A+ +F I + D WN+MI G + AI LY +ME V+PD+ T
Sbjct: 58 AISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFP 117
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNG 250
VL AC + ++ G V + + G
Sbjct: 118 FVLKACTRLCWVKMGFGVHGRVFRLG 143
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 132/256 (51%), Gaps = 42/256 (16%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS-SLEYARKMFDQIPQPNLYTWNTLIR 96
Q+K+I + + DPY+A+K+ + CALS+ SL +A ++F + + + WNT+IR
Sbjct: 25 QIKQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRSTFIWNTVIR 84
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------- 149
A++ +EP ++ M+F ++Y S + PN +T F+ KA +G A H
Sbjct: 85 AFAEKNEPRKAIMLFKNMLY-SNFLPNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGWE 143
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVF-----------------------VMIGK---- 182
F D + N L+H +A+ G + A +F V+IG+
Sbjct: 144 FYD--FVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFD 201
Query: 183 ----KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
++ VSW++MI+G+V GFFE+A+EL+ M + P+ +V ++ACA L+
Sbjct: 202 KMPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQ 261
Query: 239 GIWVSSHIEKNGIKMD 254
G W+ +I++N + +D
Sbjct: 262 GRWIHCYIKRNRMDLD 277
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 12/181 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
R++FD++P+ N +W+ +I Y +E ++ F L S ++PN + I
Sbjct: 196 GRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAMLI----SGFWPNHAGIVCAIN 251
Query: 133 AAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G+ IH + D V+ +LI YA CG + +A +F + +DV
Sbjct: 252 ACASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHV 311
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+ +ISG G A+EL+ M E V P+EVT V VL+AC++ ++ G+ + ++
Sbjct: 312 YTCLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMS 371
Query: 248 K 248
K
Sbjct: 372 K 372
>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Vitis vinifera]
Length = 667
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 135/232 (58%), Gaps = 17/232 (7%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q K++HA+++ + D + ASKL T S + L A K+FD+I N+++WN ++
Sbjct: 51 RQAKQLHARIVLSSLTPDNFLASKLIT--FYSKSNHLYEAHKVFDKILDKNIFSWNAMLI 108
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYF--PNEFTLPFVIKAA---------ARPVQFRVGQA 145
YS + + + + L+ + P+ FT+ V+KA A+ VQ V +
Sbjct: 109 GYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDSILAKEVQCFVLR- 167
Query: 146 IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
HG F+ D+ + N+LI +Y+ C + +A +F + +D+VSWNSMI+G+ +GGF+E
Sbjct: 168 -HG-FDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCK 225
Query: 206 ELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
ELYR+M + ++P+ VT+V VL ACA+ DL FG+ V I + ++MD++
Sbjct: 226 ELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVS 277
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 59 SKLFTPCALSTFSSL--EY--ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
S +F AL T+ S EY AR +FD++ ++ +WN++I YS ++ ++
Sbjct: 172 SDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKM 231
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGD 169
+ ++ PN T+ V++A A+ G +H E D+ NSLI YA CG
Sbjct: 232 LDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGS 291
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
L A +F + KD V++ S++SG++ GF +KA++L+REM+
Sbjct: 292 LDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMK 334
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 6/168 (3%)
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
T ++ A +F ++ P L TWN +I ++ + + +Q + + PN TL
Sbjct: 319 THGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCN-EGILELVQEMQEFGFRPNAVTLS 377
Query: 129 FVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
++ + + G+AIH + ++ ++ S+I YA G L A VF +
Sbjct: 378 SILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDR 437
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++ W ++IS + G A+ L+ +M +PD VT VL+ACA
Sbjct: 438 SLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACA 485
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 87/234 (37%), Gaps = 38/234 (16%)
Query: 15 PNPTTLTVNNGHQRHPHF--LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS 72
PN TL+ P F +N K K IHA + + + Y A+ + A F
Sbjct: 371 PNAVTLS-----SILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGF-- 423
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L A+ +FDQ +L W +I AYS+ + + +F ++ N P+ T V+
Sbjct: 424 LRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQ-PDPVTFTAVLA 482
Query: 133 AAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
A A GM + I + + Y + V + M+
Sbjct: 483 ACAHS----------GMVNEAWKIFDEMFLKYGF---------------QPCVEHYACMV 517
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G +A E +M +E P+ +L+ + D+E G +V H+
Sbjct: 518 GVLSRAGMLSEAAEFICKMPIE---PNAKVWGALLNGVSVSGDVELGKFVCDHL 568
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 37/257 (14%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N LK+ HAQ+ +T + ++ S+L C+ SL YA ++F++I P L NT+
Sbjct: 17 NVNHLKQAHAQVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACRVFERIHHPTLCICNTI 76
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-- 152
I+ + + +F +F ++++N P+ +T+P+V+KA A +G+ +HG
Sbjct: 77 IKTFLVNGNFYGTFHVFTKMLHNG-LGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLG 135
Query: 153 ---DLVISNSLIHFYAVCGDLAMAYCVF------------VMIG---------------- 181
D+ + NSL+ Y+VCGD+ A VF VMI
Sbjct: 136 LVFDIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFD 195
Query: 182 ---KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+KD W +MISG+V+ F++ + L+R +++ +V PDE V +LSACA L+
Sbjct: 196 EAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDI 255
Query: 239 GIWVSSHIEKNGIKMDL 255
GIW+ ++ + + + +
Sbjct: 256 GIWIHRYLNRKTVSLSI 272
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 6/164 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ AR FD+ P+ + W +I Y + + +F +L+ + P+E ++
Sbjct: 187 VDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLF-RLLQLTHVVPDESIFVSILS 245
Query: 133 AAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A +G IH V +S SL+ YA CG+L +A +F + ++D+V
Sbjct: 246 ACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMYAKCGNLELAKRLFDSMPERDIVC 305
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
WN+MISG G A++++ EME +KPD++T + V +AC+
Sbjct: 306 WNAMISGLAMHGDGASALKMFSEMEKTGIKPDDITFIAVFTACS 349
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 125/238 (52%), Gaps = 16/238 (6%)
Query: 27 QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP 86
QR H Q+ IHAQ++ DP+ +L C S +++YA ++F P
Sbjct: 47 QRSRHI----NQVLPIHAQLIRNGHSQDPFMVFELLRSC--SKCHAIDYASRIFQYTHNP 100
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
N+Y + LI + SS +++ ++ ++++ S P+ + + ++KA + R G+ +
Sbjct: 101 NVYLYTALIDGFVSSGNYLEAIQLYSRMLHES-ILPDNYLMASILKACGSQLALREGREV 159
Query: 147 HGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK----KDVVSWNSMISGFVE 197
H F + ++ ++ Y CG+L A VF + + KD V W +MI GFV
Sbjct: 160 HSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVR 219
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+A+E +R M+ ENV+P+E T+V VLSAC++ LE G WV S++ K I+++L
Sbjct: 220 NEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNL 277
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 109/215 (50%), Gaps = 18/215 (8%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASK---LFTPCALSTFSSLEYARKMFDQIPQ----PNLY 89
++ + +H++ L F + + L+ C L AR++F+++P+ +
Sbjct: 154 REGREVHSRALKLGFSSNRLVRLRIMELYGKCG-----ELGDARRVFEEMPEDVVAKDTV 208
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
W +I + ++E ++ F + + PNEFT+ V+ A ++ +G+ +H
Sbjct: 209 CWTAMIDGFVRNEETNRALEAF-RGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSY 267
Query: 150 F-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
E +L + N+LI+ Y+ CG + A VF + +DV+++N+MISG G +A
Sbjct: 268 MRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQA 327
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
IEL+R M ++P VT V VL+AC+ ++FG
Sbjct: 328 IELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFG 362
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 31/184 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S S++ A+ +FD++ ++ T+NT+I S + + Q+ +F +V P T
Sbjct: 288 SRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMV-GRRLRPTNVTF 346
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
V+ A + HG D I +S+ Y V + C+ ++G+
Sbjct: 347 VGVLNACS-----------HGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRV--- 392
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G E+A +L R M++ PD + + +LSAC ++LE G V+ +
Sbjct: 393 ------------GRLEEAYDLIRTMKM---TPDHIMLGTLLSACKMHKNLELGEQVAKEL 437
Query: 247 EKNG 250
E G
Sbjct: 438 EDRG 441
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 120/217 (55%), Gaps = 8/217 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH Q+ F F+ + L + L F +++FD++PQ +L WN LI AY+
Sbjct: 99 EQIHGQIFKLGFEFEVIIQTALLSMYGL--FDEDCGLQQIFDEMPQRDLVMWNALIAAYA 156
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDL 154
+ P + + +V +S PN T ++ + R G+A+HG + E D+
Sbjct: 157 HGNCPYKVREVSYDMV-SSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDV 215
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+LI Y+ CG + A VF ++ ++VVSW S+I+G+ + +A+ +++ME E
Sbjct: 216 FVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAE 275
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
N++PDE+T++ V+ C+K R E G W+S ++ K G+
Sbjct: 276 NIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGL 312
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 113/217 (52%), Gaps = 9/217 (4%)
Query: 46 MLSTDFFFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEP 104
M++ +P ASKL A T + AR++ DQI + YTWNT+IR Y ++P
Sbjct: 1 MITNGHLHNPTLASKLVVSFASITLPGTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDP 60
Query: 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA-RPVQFRVGQAIHGM-----FEDDLVISN 158
++ +I+ V + +TL FVIKA RPV G+ IHG FE +++I
Sbjct: 61 EEAILIY-NHVRKKGLKVDTYTLVFVIKACGLRPVILE-GEQIHGQIFKLGFEFEVIIQT 118
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
+L+ Y + + +F + ++D+V WN++I+ + G K E+ +M NVKP
Sbjct: 119 ALLSMYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVSSNVKP 178
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ VT V +LS C+ R L G V ++ KN I+ D+
Sbjct: 179 NGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDV 215
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 95/188 (50%), Gaps = 7/188 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S S+ A ++F +P N+ +W +LI YS ++ P ++ F Q+ + P+E T+
Sbjct: 226 SKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAEN-IRPDEITV 284
Query: 128 PFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
V+ ++ F +G+ I G+ ++ I+N L+ +A CG++ A +F +
Sbjct: 285 LGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANVLMDMHAKCGNIKRACQIFDGME 344
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+K +VSW MI G G A+ + +M+ E KPD + + +LSAC+ ++ G
Sbjct: 345 EKTIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWR 404
Query: 242 VSSHIEKN 249
S +E +
Sbjct: 405 CFSSMEAD 412
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G ++A + I D +WN++I G++EG E+AI +Y + + +K D T+V V+
Sbjct: 27 GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILIYNHVRKKGLKVDTYTLVFVI 86
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
AC + + G + I K G + ++ +
Sbjct: 87 KACGLRPVILEGEQIHGQIFKLGFEFEVIIQ 117
>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
Length = 583
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 10/225 (4%)
Query: 26 HQRHPHFL---TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQ 82
H+R FL T QLK++HAQ + T P + S+ L YA ++F Q
Sbjct: 26 HRRLLLFLNSCTCMSQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQ 85
Query: 83 IPQPNLYTWNTLIRAYS-SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
I PN + WN LIRA + S+D + ++ +++ ++ T PFV+KA A
Sbjct: 86 IENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALS 145
Query: 142 VGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
G+ IH F+ B+ I+NSL+HFYA C L A VF + ++ +VSWN +I FV
Sbjct: 146 EGEQIHAQILKLGFDSBVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFV 205
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
G F+ A+ L+ EM+ + +PD T+ + +ACA L G+W
Sbjct: 206 RFGEFDAALNLFGEMQ-KFFEPDGYTIQSIANACAGMGSLSLGMW 249
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 13/200 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IHAQ+L F B Y + L A T L++A+ +FD++ + +L +WN +I A+
Sbjct: 148 EQIHAQILKLGFDSBVYINNSLVHFYA--TCDRLDFAKGVFDRMSERSLVSWNVVIDAFV 205
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--------E 151
E + +F ++ + P+ +T+ + A A +G H
Sbjct: 206 RFGEFDAALNLFGEM--QKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKXDADRV 263
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+D++++ SL+ Y CG L +A +F + K+DV SWNSMI GF G A+E + M
Sbjct: 264 NDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCM 323
Query: 212 -EVENVKPDEVTMVVVLSAC 230
E + P+ +T V VLSAC
Sbjct: 324 VRTEKLMPNAITFVGVLSAC 343
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 22/187 (11%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
FL + R++ +L+T S ++ C SLE A ++F ++P+ ++ +W
Sbjct: 253 FLLKKXDADRVNDVLLNT-------SLVDMYCKCG-----SLELALQLFHRMPKRDVTSW 300
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
N++I +S+ E + F +V PN T V+ A G+ +
Sbjct: 301 NSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMV 360
Query: 152 DDLVISNSLIHFYAVCGDLAMAY-------CVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ I L H+ + LA A V M + D+V W S++ +
Sbjct: 361 TEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQ---NAG 417
Query: 205 IELYREM 211
+EL EM
Sbjct: 418 VELSEEM 424
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 133/258 (51%), Gaps = 38/258 (14%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS-LEYARKMFDQIPQPNLYTWNTLIR 96
+L++IHAQM+ T+ ++ S+L C+LS S L+YA +F +I PN + + LI+
Sbjct: 21 ELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIK 80
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMFED--- 152
+S + P++S +++ +++ Y EF++P V+KA + + F G+ +HG
Sbjct: 81 GFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHL 140
Query: 153 --DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE-------- 202
D + NS++ Y G++ +A VF + +DVVSWNSMI+G+++ G E
Sbjct: 141 WFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFET 200
Query: 203 -----------------------KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
KA++L+REM ++PD +V VLSA A +E G
Sbjct: 201 MSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEG 260
Query: 240 IWVSSHIEKNGIKMDLTF 257
W+ +++ N I++ F
Sbjct: 261 KWLHAYVSMNKIELSSGF 278
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 41/238 (17%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H Q+L T +FDP+ + + F +E AR++FD++P ++ +WN++I Y
Sbjct: 129 RQVHGQVLKTHLWFDPFVGNSMVR--MYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYL 186
Query: 100 SSDE-------------------------------PIQSFMIFLQLVYNSPYFPNEFTLP 128
+ E P+++ +F +++ + P+ +
Sbjct: 187 KAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREML-SLGLRPDGPAIV 245
Query: 129 FVIKAAARPVQFRVGQAIHGMFEDDLV------ISNSLIHFYAVCGDLAMAYCVFVMIG- 181
V+ A A G+ +H + + I ++LI Y+ CG + AY VF I
Sbjct: 246 SVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISH 305
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++++ WNSMISG G +A++++ EME +++P+E+T + +LS C+ +E G
Sbjct: 306 RRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEG 363
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 9/185 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD++ + ++ +W L+ A++ FM L ++ PNE TL V+ A
Sbjct: 172 ARKVFDEMAERDVVSWTALLSAFTRGG----MFMEALGVLAEMDVTPNEVTLASVLVACG 227
Query: 136 RPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R G+A+HG + E +L++ N+L+ Y C L +A VF M+ +D+VSW
Sbjct: 228 NLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTV 287
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG V+ +A+E++ M++ VKPD+V + VLSACA LE G WV +IE+ G
Sbjct: 288 MISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKG 347
Query: 251 IKMDL 255
I+ D+
Sbjct: 348 IEWDV 352
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 13/150 (8%)
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYF----PNEFTLPFVIKAAAR-PVQFRVGQAI 146
N LI + + + +P +F F L+ S P+ +TLP +KA AR R G
Sbjct: 81 NALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQA 140
Query: 147 HGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
H + E + + N+L+ FY CG A VF + ++DVVSW +++S F GG F
Sbjct: 141 HAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMF 200
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACA 231
+A+ + EM+ V P+EVT+ VL AC
Sbjct: 201 MEALGVLAEMD---VTPNEVTLASVLVACG 227
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 33/232 (14%)
Query: 15 PNPTTL-----------TVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFT 63
PN TL T G H + +K+L I L ++
Sbjct: 214 PNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALL-----------DMYV 262
Query: 64 PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
C L+ AR++FD + ++ +W +I P ++ +F + S P+
Sbjct: 263 KC-----EKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVF-NAMQISGVKPD 316
Query: 124 EFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFV 178
+ L V+ A A G+ +H E D+ + S++ Y CG L A +F
Sbjct: 317 KVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQ 376
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+ K+V SWN++I+GF G +A++ + M + P+EVT + VL AC
Sbjct: 377 EMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGAC 428
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 74/186 (39%), Gaps = 34/186 (18%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ A +F ++P N+ +WN LI ++ ++ F ++V S PNE T V
Sbjct: 366 GCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVA-SGLHPNEVTFITV 424
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + G+ + + +S H+ C+ ++G+
Sbjct: 425 LGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYG----------CMVDLLGRA------- 467
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK-- 248
G ++A ++ + M + +P T V +LSAC ++F + HI +
Sbjct: 468 --------GLIQEAYDVIKAMPM---RPGVFTWVTLLSACQAHGRMDFSQQILMHIHELE 516
Query: 249 ---NGI 251
NGI
Sbjct: 517 SSGNGI 522
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 137/260 (52%), Gaps = 15/260 (5%)
Query: 1 METLSTPVISIPRHPNPTTL-TVNNGHQRHPHFLTNQKQLKR---IHAQMLSTDFFF-DP 55
M L T IP+ + +T ++ G LTN K L + +HA + + +
Sbjct: 1 MSLLKTTATLIPKPSSTSTFDSLQCGTLLQS--LTNSKSLTQALQLHAHVTTGGTLRRNT 58
Query: 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
Y A+KL A+ + YA+ +FDQI N + WN++IR Y+ ++ P ++ ++L+++
Sbjct: 59 YLATKLAACYAVC--GHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKML 116
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDL 170
+ P+ FT PFV+KA + +G+ +H G E+D+ + NS++ Y GD+
Sbjct: 117 HFGQK-PDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDV 175
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
A VF + +D+ SWN+M+SGFV+ G A E++ +M + D T++ +LSAC
Sbjct: 176 EAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSAC 235
Query: 231 AKKRDLEFGIWVSSHIEKNG 250
DL+ G + ++ +NG
Sbjct: 236 GDVMDLKVGKEIHGYVVRNG 255
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 11/219 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++HA ++ D Y + + + F +E AR +FD++ +L +WNT++ +
Sbjct: 144 RKVHALVVVGGLEEDVYVGNSILS--MYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFV 201
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLV 155
+ E +F +F + + + + TL ++ A + +VG+ IHG E V
Sbjct: 202 KNGEARGAFEVFGDMRRDG-FVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRV 260
Query: 156 IS----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ NS+I Y C ++ A +F + KDVVSWNS+ISG+ + G +A+EL+ M
Sbjct: 261 CNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRM 320
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
V PDEVT++ VL+AC + L G V S++ K G
Sbjct: 321 VVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRG 359
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
S+ ARK+F+ + ++ +WN+LI Y + Q+ +F ++V P+E T+ V+
Sbjct: 278 SVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGA-VPDEVTVISVL 336
Query: 132 KAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A + R+G + + ++V+ +LI YA CG L A VF + +K++
Sbjct: 337 AACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLP 396
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ M++GF G +AI ++ EM + V PDE VLSAC+
Sbjct: 397 ACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACS 441
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%)
Query: 132 KAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
K+ + +Q G + ++ L YAVCG + A +F I K+ WNSM
Sbjct: 36 KSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSM 95
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
I G+ +A+ LY +M KPD T VL AC E G V + + G+
Sbjct: 96 IRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGL 155
Query: 252 KMDL 255
+ D+
Sbjct: 156 EEDV 159
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 10/197 (5%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S + YA +F PNL+ WNT+IR YS SD PI + ++ + + PN +T
Sbjct: 12 SPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDM-FLCGISPNSYTF 70
Query: 128 PFVIKAAARPVQFRVGQAIHGM-------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
FV+ A + ++ GQ +H FE L+ N LI YA CG + A +F +
Sbjct: 71 GFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLL--NGLIKLYAACGCMDYACVMFDEM 128
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ D SW++M+SG+ + G + ++L REM+ ENV D T+ V+ C L+ G
Sbjct: 129 PEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGK 188
Query: 241 WVSSHIEKNGIKMDLTF 257
WV S+I+K G+K+D+
Sbjct: 189 WVHSYIDKEGVKIDVVL 205
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 14/208 (6%)
Query: 40 KRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ +H+Q++ F+ KL+ C ++YA MFD++P+P+ +W+T++
Sbjct: 87 QELHSQIVKAGLDFETPLLNGLIKLYAACG-----CMDYACVMFDEMPEPDSASWSTMVS 141
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---- 152
YS + + +++ + ++ + + FTL V+ +G+ +H +
Sbjct: 142 GYSQNGQAVETLKLLREMQAEN-VSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVK 200
Query: 153 -DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+V+ +L+ Y+ CG L A VF + ++DV +W+ MI+G+ G EKA++L+ M
Sbjct: 201 IDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAM 260
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ + P+ VT VLSA + +E G
Sbjct: 261 KRSKIIPNCVTFTSVLSAYSHSGLVEKG 288
>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
Length = 586
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 9/185 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD++ + ++ +W L+ A++ FM L ++ PNE TL V+ A
Sbjct: 172 ARKVFDEMAERDVVSWTALLSAFTRGG----MFMEALGVLAEMDVTPNEVTLASVLVACG 227
Query: 136 RPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R G+A+HG + E +L++ N+L+ Y C L +A VF M+ +D+VSW
Sbjct: 228 NLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTV 287
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG V+ +A+E++ M++ VKPD+V + VLSACA LE G WV +IE+ G
Sbjct: 288 MISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKG 347
Query: 251 IKMDL 255
I+ D+
Sbjct: 348 IEWDV 352
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 13/150 (8%)
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYF----PNEFTLPFVIKAAAR-PVQFRVGQAI 146
N LI + + + +P +F F L+ S P+ +TLP +KA AR R G
Sbjct: 81 NALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQA 140
Query: 147 HGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
H + E + + N+L+ FY CG A VF + ++DVVSW +++S F GG F
Sbjct: 141 HAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMF 200
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACA 231
+A+ + EM+ V P+EVT+ VL AC
Sbjct: 201 MEALGVLAEMD---VTPNEVTLASVLVACG 227
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ AR++FD + ++ +W +I P ++ +F + S P++ L V+
Sbjct: 267 LDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVF-NAMQISGVKPDKVVLSTVLS 325
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G+ +H E D+ + S++ Y CG L A +F + K+V S
Sbjct: 326 ACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSS 385
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
WN++I+GF G +A++ + M + P+EVT + VL AC
Sbjct: 386 WNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGAC 428
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 131/246 (53%), Gaps = 26/246 (10%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS-LEYARKMFDQIPQPNLYTWNTLIR 96
+L++IHAQM+ T+ ++ S+L C+LS S L+YA +F +I PN + + LI+
Sbjct: 21 ELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIK 80
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMFED--- 152
+S + P++S +++ +++ Y EF++P V+KA + + F G+ +HG
Sbjct: 81 GFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHL 140
Query: 153 --DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D + NS++ Y G++ +A VF + +DVVSWNSMI+G+++ G E A EL+ E
Sbjct: 141 WFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDE 200
Query: 211 MEVEN-------------------VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
M + ++PD +V VLSA A +E G W+ +++ N I
Sbjct: 201 MPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKI 260
Query: 252 KMDLTF 257
++ F
Sbjct: 261 ELSSGF 266
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 111/225 (49%), Gaps = 27/225 (12%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H Q+L T +FDP+ + + F +E AR++FD++P ++ +WN++I Y
Sbjct: 129 RQVHGQVLKTHLWFDPFVGNSMVR--MYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYL 186
Query: 100 SSDEPIQSFMIFLQL------------------VYNSPYFPNEFTLPFVIKAAARPVQFR 141
+ E + +F ++ + + P+ + V+ A A
Sbjct: 187 KAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVE 246
Query: 142 VGQAIHGMFEDDLV------ISNSLIHFYAVCGDLAMAYCVFVMIG-KKDVVSWNSMISG 194
G+ +H + + I ++LI Y+ CG + AY VF I ++++ WNSMISG
Sbjct: 247 EGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISG 306
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G +A++++ EME +++P+E+T + +LS C+ +E G
Sbjct: 307 LAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEG 351
>gi|255539647|ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 137/279 (49%), Gaps = 62/279 (22%)
Query: 35 NQKQLKRIHAQMLST------DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNL 88
N QLK+IHA +L++ D +F S+L ALS SL YA +F I +PNL
Sbjct: 10 NINQLKQIHALILTSPNLDQKDHYF---LISRLLFFAALSDSGSLAYAADIFHYIKKPNL 66
Query: 89 YTWNTLIRAYSSSD-------EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
+N +IRAY+S Q+ +++ Q++ N P+ T PF++K R V
Sbjct: 67 PFYNIMIRAYASKSNVDYDDARLCQALILYKQMLCNDIS-PDCLTFPFLLKECTRNVAIY 125
Query: 142 VGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM----- 191
G+ IHG DL + NSLI FY+ C ++ + +F + +DVVSWNSM
Sbjct: 126 GGRGIHGHAIKLGLYSDLFVQNSLISFYSACEFVSNSRKLFDEMSNRDVVSWNSMIIGYL 185
Query: 192 ---------------------------ISGFVEGGFFEKAIELYREMEV--------ENV 216
I+GFV+GG ++A+E + EM+ V
Sbjct: 186 RSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPKEALEFFHEMQCLRDDDGINNKV 245
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+PD++T+ VLSACA ++ G WV S++ ++G++ D+
Sbjct: 246 RPDKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECDM 284
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 52/247 (21%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY---ARKMFDQIPQPNLYTWNTLIR 96
+ IH + + D + + L +S +S+ E+ +RK+FD++ ++ +WN++I
Sbjct: 128 RGIHGHAIKLGLYSDLFVQNSL-----ISFYSACEFVSNSRKLFDEMSNRDVVSWNSMII 182
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYF----------------------------------- 121
Y S + QS +F ++ N
Sbjct: 183 GYLRSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPKEALEFFHEMQCLRDDDGIN 242
Query: 122 ----PNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAM 172
P++ T+ V+ A A G+ +H E D+VI +L+ Y CG L
Sbjct: 243 NKVRPDKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECDMVIGTALVDMYGKCGCLQR 302
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
AY VF + +KD ++W +MIS F GF ++A +++ EME VKP+ VT V +LSACA
Sbjct: 303 AYEVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEMEAGGVKPNLVTFVGLLSACAH 362
Query: 233 KRDLEFG 239
+E G
Sbjct: 363 SGLVETG 369
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 133/254 (52%), Gaps = 38/254 (14%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQPNLYTWNTLIR 96
QLK+I + + T DPY+A+K+ + A S SSL YA ++F + + + WNT+++
Sbjct: 26 QLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTMMQ 85
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
A+ +E +++F ++ ++ S Y PN FT FVI+A ++G HG +E
Sbjct: 86 AFVEKNEAVRAFSLYKHML-ESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWE 144
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV-------------------------- 185
+ N LIH YA CG + +A +F M K+DV
Sbjct: 145 SYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRM 204
Query: 186 -----VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
VSW ++I+G+V GFF++A+E++ +M+V + + ++V L+ACA L+ G
Sbjct: 205 PEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGR 264
Query: 241 WVSSHIEKNGIKMD 254
W+ ++++++ + +D
Sbjct: 265 WIHAYVKRHHMSLD 278
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 12/175 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN---SPYFPNEFTLPFVIK 132
AR++FD++P+ N +W LI Y I F L++ Y+ S + N ++ +
Sbjct: 197 ARELFDRMPEKNPVSWGALIAGYVR----IGFFKEALEVFYDMQVSGFRLNRASIVGALT 252
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G+ IH + D ++ +LI YA CG + MA VF + +DV +
Sbjct: 253 ACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYA 312
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+ +ISG E AI+L+ M+ E V P+EVT V VL+AC++ ++ G+ +
Sbjct: 313 FTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRI 367
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 37/211 (17%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNL 88
FL Q + IHA + D + L + C +E A +FD++ ++
Sbjct: 256 FLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCG-----CIEMACSVFDEMDDRDV 310
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
Y + LI ++ D+ + +F ++ + PNE T V+ A +R G
Sbjct: 311 YAFTCLISGLANHDKSEAAIDLFNRM-QDEGVVPNEVTFVCVLNACSRM----------G 359
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
M ++ L I S+ + Y + + C+ ++G+ G E+A ++
Sbjct: 360 MVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGR---------------AGKIEEAKQVV 404
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
REM ++ PD T+ +L AC D++ G
Sbjct: 405 REMPLQ---PDSYTLGALLDACRVHGDVQLG 432
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 118/212 (55%), Gaps = 15/212 (7%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
DP S S++ ALS SL A +F+QI +P L WN +I S SD P +
Sbjct: 3 IDPSSISEVIKHYALSP-QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHF-- 59
Query: 113 QLVYNSPYFP----NEFTLPFVIKAAARPVQFRVGQAI--HGM---FEDDLVISNSLIHF 163
YN+ Y+ + T F+ K+ AR R GQ + H M FE +SN+LIH
Sbjct: 60 ---YNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHM 116
Query: 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
Y G+LAMA VF + ++DVVSWNS+I G+ + F+K ++L+REM+ NV+ D VTM
Sbjct: 117 YVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTM 176
Query: 224 VVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ +SA + E G ++ +I+++G+ +DL
Sbjct: 177 MKAISATCFLSEWEMGDYLVKYIDEHGVVVDL 208
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 6/178 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ +L A+K+F+++P ++ +W ++I YS + + ++ +F +++ S P+E T+
Sbjct: 250 AKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMV-SMVKPDEITV 308
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A A G+A+H + D+ + NSLI Y CG + A VF +
Sbjct: 309 ATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKT 368
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+D VSW S+ISG GF E A+ ++ +M E + P T V VL ACA ++ G+
Sbjct: 369 RDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGV 426
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 47/259 (18%)
Query: 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTW 91
Q Q+ R+H+ L F+ S F AL F L A+K+FD + + ++ +W
Sbjct: 90 QGQMVRVHSMKLG----FESXS----FVSNALIHMYVCFGELAMAQKVFDGMLERDVVSW 141
Query: 92 NTLIRAYSSSDEPIQSFMIFLQL--------------VYNSPYFPNEFTL-PFVIKA--- 133
N++I Y + + +F ++ ++ F +E+ + +++K
Sbjct: 142 NSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDE 201
Query: 134 -----------------AARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
R + G+ + M E ++V N++I YA G+L A +
Sbjct: 202 HGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKL 261
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + +DV+SW SMI G+ +A++L++EM V VKPDE+T+ LSACA L
Sbjct: 262 FNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSL 321
Query: 237 EFGIWVSSHIEKNGIKMDL 255
+ G V +I K+ IK D+
Sbjct: 322 DAGEAVHDYIRKHDIKSDV 340
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 42/258 (16%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALST-FSSLEYARKMFDQIPQPNLYTWN 92
N KQLK+IHA+++ D KL C +S+ + ++YA +FDQ+ P+++TWN
Sbjct: 31 NNFKQLKQIHARIIRFRLTHDQLLIRKL---CQISSSYGKIDYASLVFDQLNDPDIFTWN 87
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+IRAY++S P +S +F ++ + P++FT PFVI A G+ HG+
Sbjct: 88 VMIRAYNTSGLPQKSIFLFKDMIC-CGFLPDKFTYPFVINACIASGVIDFGRLTHGLAIK 146
Query: 150 --FEDDLVISNSLIHFY--------------------------------AVCGDLAMAYC 175
F D+ + N++++ Y CG L A
Sbjct: 147 MGFWSDVYVQNNMMNLYFKIGGDVDDGWKVFDKMRVRNVVSWTTVIAGLVACGKLDTARE 206
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF I K+VVSW +MI+G+V+ KA +L+ M ++NV+P+E T+V ++ AC
Sbjct: 207 VFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLIDNVRPNEFTLVSLIKACTDLGS 266
Query: 236 LEFGIWVSSHIEKNGIKM 253
L+ G + KNG ++
Sbjct: 267 LKLGRRMHDFALKNGFEL 284
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 103/179 (57%), Gaps = 6/179 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L L+ AR++F++IP N+ +W +I Y +D PI++F +F +++ ++ PNEF
Sbjct: 194 GLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLIDNVR-PNEF 252
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
TL +IKA ++G+ +H FE + +L+ Y+ CG L A VF ++
Sbjct: 253 TLVSLIKACTDLGSLKLGRRMHDFALKNGFELGPFLGTALVDMYSKCGSLDAAVKVFGLM 312
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+++ +WN+M++ F GF + ++L++EME V PD +T V VLSAC + DLE G
Sbjct: 313 EVRNLATWNTMLTSFGVHGFGNEVLDLFKEMEKAGVVPDAITFVGVLSACVQINDLELG 371
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 130/247 (52%), Gaps = 13/247 (5%)
Query: 17 PTTLTVNNG-HQRHPHFLT------NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALST 69
PTTL+ N G R ++ + K L+++HA ++ T + + K+ CA+S
Sbjct: 38 PTTLSENEGFDSREERVMSVFKQCESMKHLEQLHAHVIQTGLEQNLFVMGKIIVFCAVSE 97
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
S++YA ++F +I P+ + WNT+IR + +P ++F + ++ N FT F
Sbjct: 98 CGSMDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDN-FTYSF 156
Query: 130 VIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
++K + +G+ IH E+ + + N+L+H Y + D+ A +F + K
Sbjct: 157 LVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSY 216
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+V+WN++I V G +++AIEL+ M +KPD+ T VV LSACA +L+ G V S
Sbjct: 217 LVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHS 276
Query: 245 HIEKNGI 251
I+ G+
Sbjct: 277 CIDHTGL 283
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 7/176 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F +E A +F+++P+ L WNT+I ++ +F +++ S P++ T
Sbjct: 199 FKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRML-QSGLKPDDATFVV 257
Query: 130 VIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+ A A + +G+ +H + + + +SNSLI YA CG + AY +F + ++
Sbjct: 258 TLSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRN 317
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVK-PDEVTMVVVLSACAKKRDLEFG 239
+VSWN+MI G G ++A+EL+ +M E + P+EVT + VL AC+ +E G
Sbjct: 318 IVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEG 373
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 144 QAIHGMFEDDLVISNSLIHFYAV--CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
I E +L + +I F AV CG + A VF I D WN+MI G
Sbjct: 73 HVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALRVFGKIENPDGFLWNTMIRGLGRTRQP 132
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
EKA E Y+ M+V+ D T ++ C + G + ++ K+G++
Sbjct: 133 EKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLE 183
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 18/237 (7%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H ++ Q+K+IHAQ+L + + + KL A S + A +F+QI P++
Sbjct: 25 HRCSSLNQVKQIHAQVLKANLHRESFVGQKLIA--AFSLCRQMTLAVNVFNQIQDPDVLL 82
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
+NTLIRA+ + EP+ +F +F ++ +S + FT PF++KA + V RV + IH
Sbjct: 83 YNTLIRAHVRNSEPLLAFSVFFEM-QDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQV 141
Query: 151 ED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
E D+ + NSLI Y G+L A +F + ++D VSWN+++ G+V+ G A
Sbjct: 142 EKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAF 201
Query: 206 ELYREMEVENV----------KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
EL+ +M NV K D+ T++ +LSACA L G V + IE+ K
Sbjct: 202 ELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFK 258
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 16/203 (7%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IHAQ+ F D + + L + L AR++FD++P+ + +WNT++ Y +
Sbjct: 137 IHAQVEKMGFCLDIFVPNSLID--SYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKA 194
Query: 102 DEPIQSFMIFLQLVYNS--PYFPNEFTLPF-------VIKAAARPVQFRVGQAIHG---- 148
E +F +F ++ + + E L F ++ A A +G+ +H
Sbjct: 195 GEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIER 254
Query: 149 -MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F+ +SN+LI YA CG L A +F + +KDVVSWN++I G G EKA++L
Sbjct: 255 TRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQL 314
Query: 208 YREMEVENVKPDEVTMVVVLSAC 230
+ M+ E PD+VT V VL AC
Sbjct: 315 FSRMKGEGFVPDKVTFVGVLCAC 337
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%)
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ LI +++C + +A VF I DV+ +N++I V A ++ EM+
Sbjct: 51 VGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSG 110
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V D T +L AC+ K + + + +EK G +D+
Sbjct: 111 VCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDI 150
>gi|255591025|ref|XP_002535423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223523164|gb|EEF26960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 9/220 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+ +L F FD Y + L A F L AR +F+++ ++ +WN+LI YS++
Sbjct: 55 VQNHVLEIGFGFDLYIGNALVDMYA--RFGDLVKARNVFEEMTHRDIVSWNSLISGYSAN 112
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVI 156
++ I+ +L + P+ FTL V+ A + + G+ IHG+ E D+++
Sbjct: 113 GYWDEALEIYYELRI-AGLKPDNFTLSSVLPACGGLLAVKEGEVIHGLVEKLGMNIDVIM 171
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
SN L+ Y G L A VF + KD VSWN++I G+ + FE++I+L+REM V+
Sbjct: 172 SNGLLSMYFKFGRLMDAQRVFNKMVVKDYVSWNTLICGYCQMELFEESIQLFREM-VKRF 230
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+PD +T+ VL AC RDLEFG +V +I ++GI+ D+T
Sbjct: 231 RPDLLTITSVLRACGLLRDLEFGKFVHDYILRSGIEFDVT 270
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLV-YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG- 148
WN++IRA + + ++ ++ ++ +N P+ +T P VI A A F +G +
Sbjct: 1 WNSVIRALTHNGLFSKALDLYFKMKDFNVK--PDTYTFPSVINACAALGDFEIGNVVQNH 58
Query: 149 ----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
F DL I N+L+ YA GDL A VF + +D+VSWNS+ISG+ G++++A
Sbjct: 59 VLEIGFGFDLYIGNALVDMYARFGDLVKARNVFEEMTHRDIVSWNSLISGYSANGYWDEA 118
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+E+Y E+ + +KPD T+ VL AC ++ G + +EK G+ +D+
Sbjct: 119 LEIYYELRIAGLKPDNFTLSSVLPACGGLLAVKEGEVIHGLVEKLGMNIDV 169
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 101/192 (52%), Gaps = 8/192 (4%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F L A+++F+++ + +WNTLI Y + +S +F ++V + P+ T+
Sbjct: 182 FGRLMDAQRVFNKMVVKDYVSWNTLICGYCQMELFEESIQLFREMV--KRFRPDLLTITS 239
Query: 130 VIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V++A G+ +H E D+ SN +I YA CGDL + F I +D
Sbjct: 240 VLRACGLLRDLEFGKFVHDYILRSGIEFDVTASNIVIDTYAKCGDLLASRKAFDRIKCRD 299
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VSWN++I+G+++ + + ++L+++M+++ +KPD +T V +LS + D E G +
Sbjct: 300 SVSWNTLINGYIQSRSYGEGVKLFKKMKMD-LKPDSITFVTLLSISTRLADTELGKEIHC 358
Query: 245 HIEKNGIKMDLT 256
+ K G DL
Sbjct: 359 DLAKLGFDSDLV 370
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 14/223 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + + K IH + F D ++ L ++ C +++ + K+F+ + ++
Sbjct: 347 LADTELGKEIHCDLAKLGFDSDLVVSNALVDMYSKCG-----NVKDSLKVFENMKVRDIV 401
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TWNT+I A +++ +F + Q+ N P+ TL ++ + R G+ +H
Sbjct: 402 TWNTIIAACVQAEDCTLAFRMISQM-RNEELIPDMGTLLGILPICSLIAAKRQGKEVHAC 460
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
FE + + N+LI Y+ C +L VF + KDVV+W +++S + G +KA
Sbjct: 461 TFKFGFESTVPVGNALIEMYSKCSNLKYCIRVFEDMKTKDVVTWTALVSAYGMYGEGKKA 520
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+ + EME + PD + V ++ AC+ +E G+ H++
Sbjct: 521 LRAFAEMEEAGIIPDHIAFVAIIYACSHSGSVEEGLACFDHMK 563
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 107/189 (56%), Gaps = 9/189 (4%)
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAA 134
R +FDQIP P + +N+LIRA ++ + L L SP PN FTL F +KA
Sbjct: 78 RTLFDQIPDPTAFCYNSLIRALPAAGAAPAPALAVYRLMLRAGSPR-PNTFTLAFALKAC 136
Query: 135 AR---PVQFRV--GQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVF-VMIGKKDVVSW 188
A P + R QA+ E + L++ YA C +A+A VF M K +V+W
Sbjct: 137 AAVPAPGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVFDGMAPDKSLVAW 196
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
++MI+G+ G +A+ L+REM+ V+PDEVTMV V+SACAK L+ G WV ++I++
Sbjct: 197 SAMINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGALDLGKWVHAYIDR 256
Query: 249 NGIKMDLTF 257
GI +DL
Sbjct: 257 KGITVDLEL 265
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 105/219 (47%), Gaps = 9/219 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI-PQPNLYTWNTLIRAY 98
+++HAQ L Y + L A + AR +FD + P +L W+ +I Y
Sbjct: 146 RQLHAQALRQGLEASAYVQTGLLNLYA--KCEQVALARTVFDGMAPDKSLVAWSAMINGY 203
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----D 153
S ++ +F ++ P+E T+ VI A A+ +G+ +H + D
Sbjct: 204 SRVGMVTEALGLFREM-QAVGVEPDEVTMVGVISACAKAGALDLGKWVHAYIDRKGITVD 262
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L +S +LI YA CG + A VF + +KD +W++MI GF G E A+ L+ M
Sbjct: 263 LELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLE 322
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
V+P+ VT + VLSACA ++ G S ++ GIK
Sbjct: 323 LKVRPNNVTFIGVLSACAHSGLVDDGRRYWSIMQNLGIK 361
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 118/228 (51%), Gaps = 38/228 (16%)
Query: 65 CALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
C LS F L YA +F+ I +PNL WNT+ R ++ S +P+ + +++ ++ + PN
Sbjct: 4 CILSPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMI-SLGLLPN 62
Query: 124 EFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHF--------------- 163
+T PF++K+ A+ + G IHG +E DL + SLI
Sbjct: 63 SYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFD 122
Query: 164 ----------------YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
YA G + A +F I KDVVSWN+MISG+VE G +++A+EL
Sbjct: 123 RSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALEL 182
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++EM NV+PDE TMV V+SA A+ +E G V S I +G +L
Sbjct: 183 FKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNL 230
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 116/205 (56%), Gaps = 10/205 (4%)
Query: 53 FDPYSASKLFTPCALST-FSS---LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSF 108
FD S + + AL T ++S +E AR MFD+IP ++ +WN +I Y + ++
Sbjct: 121 FDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEAL 180
Query: 109 MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHF 163
+F +++ + P+E T+ VI A+AR +G+ +H D +L I N+LI F
Sbjct: 181 ELFKEMM-KTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDF 239
Query: 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
Y+ CG++ A +F+ + KDV+SWN +I G+ +++A+ L++EM P++VTM
Sbjct: 240 YSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTM 299
Query: 224 VVVLSACAKKRDLEFGIWVSSHIEK 248
+ +L ACA ++ G W+ +I+K
Sbjct: 300 LSILHACAHLGAIDIGRWIHVYIDK 324
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +E A +F + ++ +WN LI Y+ + ++ ++F +++ S PN+ T+
Sbjct: 241 SKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEML-RSGESPNDVTM 299
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMAYCVFVMI 180
++ A A +G+ IH + L + SLI Y+ CGD+ A+ VF +
Sbjct: 300 LSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSM 359
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
K + +WN+MI GF G A +++ M +KPD++T V +LSAC+ L+ G
Sbjct: 360 LHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLG 418
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 9/221 (4%)
Query: 38 QLKRIHAQMLSTDFFFDP--YSASKLFTPCALSTFSS-LEYARKMFDQIPQPNLYTWNTL 94
Q K HA +L+T + SKL C S F YA +F QI PN+Y +N++
Sbjct: 19 QFKTSHALILTTPTTINTKIIPLSKLIDFCVDSHFDEYFNYANLLFRQIHSPNVYIFNSM 78
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
I+ Y+ S+ P S ++ Q++ N Y P+ FT PFV+KA + G+ +H
Sbjct: 79 IKGYAKSNNPTMSLHLYKQMLQNG-YSPDHFTFPFVLKACSFIYDQVSGKCVHSCILKSG 137
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
FE ++ ++ L++ Y C ++ VF I K +VV+W +I+G+V +A+E+++
Sbjct: 138 FEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFK 197
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
EM V+ +EVTMV L ACA+ RD++ G WV + K G
Sbjct: 198 EMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAG 238
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 119/241 (49%), Gaps = 21/241 (8%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNL 88
F+ +Q K +H+ +L + F + Y A+ L + C ++E K+FD+IP+ N+
Sbjct: 119 FIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVEC-----KNMESGLKVFDKIPKWNV 173
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
W LI Y +D+P ++ +F ++ NE T+ + A AR G+ +H
Sbjct: 174 VAWTCLINGYVINDQPREALEVFKEM-GRWGVEANEVTMVNALIACARCRDVDTGRWVHE 232
Query: 149 MF------------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
+++++ +++ YA CG L +A +F + ++++V+WN MI+ +
Sbjct: 233 RVCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYN 292
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ + +A+ L+ M PD+ T + VLS CA++ L G V +++ K+ + D+
Sbjct: 293 QYERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIA 352
Query: 257 F 257
Sbjct: 353 L 353
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 8/166 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L AR++F+++P+ N+ WN +I AY+ + ++ +F ++ N + P++ T V+
Sbjct: 266 LNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFYMLANG-FCPDKATFLSVLS 324
Query: 133 AAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFV-MIGKKDVV 186
AR +G+ +H D+ ++ +L+ YA G+L A +F + KKDVV
Sbjct: 325 VCARRCVLALGETVHAYLLKSNMAKDIALATALLDMYAKNGELGSAQKIFNNSLEKKDVV 384
Query: 187 SWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACA 231
W SMI+ G +A+ L++ M E ++ PD +T + VL AC+
Sbjct: 385 MWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHITYIGVLFACS 430
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F I +V +NSMI G+ + ++ LY++M PD T VL AC+ D
Sbjct: 63 LFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYD 122
Query: 236 LEFGIWVSSHIEKNGIKMDL 255
G V S I K+G + ++
Sbjct: 123 QVSGKCVHSCILKSGFEANV 142
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 42/258 (16%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+LK+IHA ++ + +K+ C + EYA +F ++ PN + +N +IRA
Sbjct: 3 ELKKIHAHVVKFSLSXSSFLVTKMVDMC--NHHGETEYANLLFKRVADPNAFLYNAMIRA 60
Query: 98 YSSSDEPIQSFMIFLQLVYNS----PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--- 150
Y + I + + Q++ +S P FP++FT PFV+K A + + +G+ +HG
Sbjct: 61 YKHNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKF 120
Query: 151 --EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG-------FF 201
+ + VI NSL+ Y C L A+ VF + ++D VSWN++ISG V G F
Sbjct: 121 GPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIF 180
Query: 202 EK------------------------AIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
E+ A+E +R M++ +++ DE+++V VL ACA+ LE
Sbjct: 181 EELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGALE 240
Query: 238 FGIWVSSHIEKNGIKMDL 255
G W+ + +K G D+
Sbjct: 241 LGKWIHIYADKAGFLRDI 258
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTL 127
+ AR +F+++ +++W ++ Y+ + F +Q+V +E +L
Sbjct: 170 LGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMV---DIELDEISL 226
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A+ +G+ IH F D+ + N+LI YA G + +F + +
Sbjct: 227 VSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNE 286
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DV+SW++MI G G +AIEL++EM+ V+P+ +T V +LSACA L G+
Sbjct: 287 RDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGY 346
Query: 243 SSHIEKN 249
+E++
Sbjct: 347 FESMERD 353
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 143/294 (48%), Gaps = 70/294 (23%)
Query: 27 QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP 86
+ H H N KQ RI +QM+ T F D ++AS+L S F L+Y+ ++FD+I
Sbjct: 45 ETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENS 104
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA-RPVQFRVGQA 145
N + WNT++RAY S+ ++ +++ +V N+ P+ +T P V++A A R ++F G+
Sbjct: 105 NGFMWNTMMRAYIQSNSAEKALLLYKLMVKNN-VGPDNYTYPLVVQACAVRLLEFG-GKE 162
Query: 146 IHGM-----FEDDLVISNSLIHFYAVC-------------------------------GD 169
IH F+ D+ + N+LI+ YAVC GD
Sbjct: 163 IHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGD 222
Query: 170 LAMAYCVF---------------VMIGK----------------KDVVSWNSMISGFVEG 198
+ A +F V++GK KD+VSW+++ISG+ +
Sbjct: 223 VEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQN 282
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
G +E+A+ ++ EM ++ DEV +V VLSACA ++ G + + + GI+
Sbjct: 283 GMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIE 336
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 112/227 (49%), Gaps = 37/227 (16%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
L + A K+F+++ + ++ +W+ LI Y + ++ ++F+++ N +E
Sbjct: 248 LGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL-DEVV 306
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA---------------- 165
+ V+ A A + G+ IHG+ E + + N+LIH Y+
Sbjct: 307 VVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSH 366
Query: 166 ---------------VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
CG + A +F ++ +KD+VSW+++ISG+ + F + + L+ E
Sbjct: 367 NLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHE 426
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M++ ++PDE +V V+SAC L+ G WV ++I KNG+K+++
Sbjct: 427 MQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVIL 473
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 9/206 (4%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
D S + + + C S+E AR +FD +P+ ++ +W+ +I Y+ D ++ +F
Sbjct: 368 LDQISWNSMISGCM--KCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFH 425
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVC 167
++ P+E L VI A G+ +H + +++ +L+ Y C
Sbjct: 426 EMQL-GQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKC 484
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G + A VF + +K V SWN++I G G E++++++ EM+ V P+E+T + VL
Sbjct: 485 GCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVL 544
Query: 228 SACAKKRDLEFG-IWVSSHIEKNGIK 252
AC ++ G +S IEK+GI+
Sbjct: 545 GACRHMGLVDEGRCHFASMIEKHGIE 570
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F I + WN+M+ +++ EKA+ LY+ M NV PD T +V+ ACA R
Sbjct: 97 IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRL 155
Query: 236 LEF-GIWVSSHIEKNGIKMDL 255
LEF G + H+ K G D+
Sbjct: 156 LEFGGKEIHDHVLKVGFDSDV 176
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 126/237 (53%), Gaps = 21/237 (8%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF--SSLEYARKMFDQIPQPNL 88
H + LK+IHA ++++ D + SK+ S F + + FD + Q +L
Sbjct: 13 HRCKTIRSLKQIHAHLIASGLLHDEFVLSKV------SEFFGKHIGFVDYAFDFLNQTDL 66
Query: 89 YT----WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ +NTLI AY+SS P +F+++ ++V N + P+ +T P V+KA + + + G+
Sbjct: 67 HVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNG-FVPDMYTFPVVLKACTKFLGVQEGE 125
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+HG+ F DL + NSL+HFY+VCG A VF + +DVVSW +ISG+V G
Sbjct: 126 QVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTG 185
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
F++AI L+ +M+ V P+ T V VL AC + L G V + K + L
Sbjct: 186 LFDEAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLV 239
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
FL Q+ +++H + F D Y + L S A ++FD++ ++ +W
Sbjct: 118 FLGVQEG-EQVHGVAVKMGFLCDLYVQNSLLH--FYSVCGKWGGAGRVFDEMLVRDVVSW 174
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
LI Y + ++ +FL++ PN T V+ A R +G+ +HG+
Sbjct: 175 TGLISGYVRTGLFDEAINLFLKM----DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVY 230
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F LV+ N+L+ Y C L A +F + +D+VSW S+ISG V+ + ++E
Sbjct: 231 KRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLE 290
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
L+ +M++ V+PD + + VLSACA L++G WV +IE+ GI+ D+
Sbjct: 291 LFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDI 339
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD++P ++ +W ++I +P S +F + S P+ L V+ A A
Sbjct: 257 ARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQI-SGVEPDRIILTSVLSACA 315
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ + E D+ I +L+ YA CG + MA +F I +++ +WN+
Sbjct: 316 SLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNA 375
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++ G G +A++ + M ++P+EVT + +L+AC
Sbjct: 376 LLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACC 416
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 30/177 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E A +F+ IP N++TWN L+ + ++ F +L+ + PNE T +
Sbjct: 353 GCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHF-ELMIGAGIRPNEVTFLAI 411
Query: 131 IKAAARPVQFRVGQA-IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ A G++ + M S L H+
Sbjct: 412 LTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHY-------------------------G 446
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
MI G ++A + R M + PD + +LSAC ++E + SH+
Sbjct: 447 CMIDLLCRAGLLDEAYKFIRNMP---LPPDVLIWGALLSACKANGNVELSQEILSHL 500
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 120/234 (51%), Gaps = 19/234 (8%)
Query: 37 KQLKRIHAQML-------STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
++L ++HA +L ++D Y A A + L +AR++FD IP P+
Sbjct: 25 QRLNQLHAHLLVHGSLSAASDLLLASYCA------LAKAGHGVLCHARRLFDGIPGPDRV 78
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+NT+IRAY +S P ++ + ++ PNEFTLPFV+KA A+HG+
Sbjct: 79 MYNTIIRAYCNSSCPREALRLHRGMLRRG-ILPNEFTLPFVVKACTIAQAREHALAVHGV 137
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ + N+L+H YA G L + F + ++VVSWNSMI G+ + G +
Sbjct: 138 ALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREV 197
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
L+ EM + DE T+V +L AC+++ +LE G V + +G ++DL E
Sbjct: 198 CSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILE 251
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
CA + S+ AR FD +P+ N+ +WN +I Y + ++ ++ Q+ + P+E
Sbjct: 287 CAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQM-QSQGLAPDE 345
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVM 179
TL V+ A+ R VG+ +H D D+ + NSL+ YA CG + A +F
Sbjct: 346 ITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSE 405
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++VVSWN +I G G I +R M ++ PD +T V +LSAC+ LE G
Sbjct: 406 MCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETG 465
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 108/218 (49%), Gaps = 37/218 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
++ SL +R+ FD++ N+ +WN++I Y+ + + + +F ++ + +EFTL
Sbjct: 158 ASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEM-RRQGFLEDEFTL 216
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAY-------- 174
++ A ++ +G+ +H DL++ ++L+ Y CGDL MA
Sbjct: 217 VSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPI 276
Query: 175 -----------------------CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
C F + ++++VSWN+MIS +V+ G +A++LY +M
Sbjct: 277 KSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQM 336
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+ + + PDE+T+V VLSA + DL G V +I N
Sbjct: 337 QSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDN 374
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 133/263 (50%), Gaps = 25/263 (9%)
Query: 4 LSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQL---KRIHAQMLSTDFFFDPYSASK 60
+ V ++ HP + L H T K L K++HA ML T P +K
Sbjct: 1 MGLRVFALHCHPRSSLLL---------HLCTKAKTLAEAKQVHAHMLLTGILRIPSVETK 51
Query: 61 L---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117
L + C SL AR FD + + +++ WN +I Y E ++ ++ Q+
Sbjct: 52 LLNLYVKCG-----SLPDARLAFDNMTKGDVFPWNVMIGGYVKHGETREALELYHQMQKV 106
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAM 172
S P+ +T V+ A AR G+ I+ E D+++ N+LI+ + CG +
Sbjct: 107 SSTNPDNYTYSSVLNACARLASLSEGKLIYDEIISKGCEMDVIVENALINMFMKCGSIED 166
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
A VF + ++++VSW +M+SG+ +GGF ++A+ ++ EM+ E+VK + VT+ VL ACA+
Sbjct: 167 ARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQ 226
Query: 233 KRDLEFGIWVSSHIEKNGIKMDL 255
DL+ G + +I + G+ + +
Sbjct: 227 LSDLQQGKEIHGYIIRRGLDLGI 249
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 46/236 (19%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+F C S+E AR++FD++ + NL +W ++ Y+ ++ +F ++
Sbjct: 157 MFMKCG-----SIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEM-QGEDV 210
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
N T+ V+ A A+ + G+ IHG + +V+ N+LI YA CG + A
Sbjct: 211 KANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQK 270
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR-------------------------- 209
VF + ++DVVSWN I+G+ + G F++ +EL+R
Sbjct: 271 VFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKMQCAGLKIDVITWNTLITAYAQNGY 330
Query: 210 ---------EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+M++ VKP+ +T+ VLSACA L+ G + + ++ K D+
Sbjct: 331 GDQTLELFQQMQLRGVKPNSITIASVLSACAAVSALQEGKRIHDLVNRSECKSDIC 386
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME-VE 214
+ L++ Y CG L A F + K DV WN MI G+V+ G +A+ELY +M+ V
Sbjct: 48 VETKLLNLYVKCGSLPDARLAFDNMTKGDVFPWNVMIGGYVKHGETREALELYHQMQKVS 107
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ PD T VL+ACA+ L G + I G +MD+ E
Sbjct: 108 STNPDNYTYSSVLNACARLASLSEGKLIYDEIISKGCEMDVIVE 151
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K + ++S + Y+ + F C +E RKM + ++ TWNTLI AY+
Sbjct: 274 KMLQRDVVSWNVAIAGYAQNGRFDEC-------MELFRKMQCAGLKIDVITWNTLITAYA 326
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDL 154
+ Q+ +F Q+ PN T+ V+ A A + G+ IH + + D+
Sbjct: 327 QNGYGDQTLELFQQMQLRGVK-PNSITIASVLSACAAVSALQEGKRIHDLVNRSECKSDI 385
Query: 155 VISNSLI 161
+ N+LI
Sbjct: 386 CVGNALI 392
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 14/224 (6%)
Query: 40 KRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H ++ + F D SA ++ C + E A K+FD++P+ ++ +WN +I
Sbjct: 318 KMVHTHVIKSGFAMDVVVMSSAVGMYAKCNV-----FEDAIKLFDEMPERDVASWNNVIS 372
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
Y +P ++ +F ++ S + P+ TL VI + AR + G+ IH F
Sbjct: 373 CYYQDGQPEKALELFEEMKV-SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFA 431
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D +S++L+ Y CG L MA VF I +K+VVSWNSMI+G+ G + IEL+R M
Sbjct: 432 LDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM 491
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ E ++P T+ +L AC++ +L+ G ++ +I +N ++ D+
Sbjct: 492 DEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADI 535
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 19/234 (8%)
Query: 15 PNPTTLT-VNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTF 70
P+ TLT V + R L + ++ K IH +++ + F D + +S L + C
Sbjct: 397 PDSVTLTTVISSCAR----LLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCG---- 448
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE A+++F+QI + N+ +WN++I YS + +F ++ P TL +
Sbjct: 449 -CLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM-DEEGIRPTLTTLSSI 506
Query: 131 IKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A +R V ++G+ IHG E D+ +++SLI Y CG++ A VF + K +V
Sbjct: 507 LMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNV 566
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
VSWN MISG+V+ G + +A+ ++ +M VKPD +T VL AC++ LE G
Sbjct: 567 VSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG 620
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 104/186 (55%), Gaps = 8/186 (4%)
Query: 76 ARKMFDQIPQP-NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKA 133
A+ +F I P ++ WN L+ A + + I+ +F +L++ PY P+ FT P V+KA
Sbjct: 249 AKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLH-FPYLKPDAFTYPSVLKA 307
Query: 134 AARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ + G+ +H F D+V+ +S + YA C A +F + ++DV SW
Sbjct: 308 CSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASW 367
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
N++IS + + G EKA+EL+ EM+V KPD VT+ V+S+CA+ DLE G + + +
Sbjct: 368 NNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVR 427
Query: 249 NGIKMD 254
+G +D
Sbjct: 428 SGFALD 433
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 27/246 (10%)
Query: 1 METLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASK 60
+ TLS+ +++ R N + G H + + N R+ A + D
Sbjct: 500 LTTLSSILMACSRSVN-----LQLGKFIHGYIIRN-----RVEADIFVNSSLID------ 543
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L+ C ++ A +F +P+ N+ +WN +I Y +++ +IF + +
Sbjct: 544 LYFKCG-----NIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDM-RKAGV 597
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
P+ T V+ A ++ G+ IH E + V+ +L+ YA CG + A
Sbjct: 598 KPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALH 657
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F + ++D VSW SMI+ + G +A++L+ +M+ + KPD+VT + +LSAC+
Sbjct: 658 IFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGL 717
Query: 236 LEFGIW 241
++ G +
Sbjct: 718 VDEGCY 723
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-DVVS 187
A ++ +G+ IH ++++ + SLI+ Y C A VF I D+
Sbjct: 205 AGSALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITL 264
Query: 188 WNSMISGFVEGGFFEKAIELY-REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
WN +++ + F + +E++ R + +KPD T VL AC+ + +G V +H+
Sbjct: 265 WNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHV 324
Query: 247 EKNGIKMDLT 256
K+G MD+
Sbjct: 325 IKSGFAMDVV 334
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 38/257 (14%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N QLK+IH +++ + D +L + S+F +YA +F+Q+ P+ +TWN
Sbjct: 31 SNFSQLKQIHTKIIKHNLTNDQLLVRQLISVS--SSFGETQYASLVFNQLQSPSTFTWNL 88
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IR+ S + +P ++ ++F+ ++ + ++FT PFVIKA R+G +HG+
Sbjct: 89 MIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKA 148
Query: 150 -FEDDLVISNSLIHFYAVCG-------------------------------DLAMAYCVF 177
F +D+ N+L+ Y CG L A VF
Sbjct: 149 GFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVF 208
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ ++VVSW +MI+ +V+ ++A +L+R M+V++VKP+E T+V +L A + L
Sbjct: 209 NQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLS 268
Query: 238 FGIWVSSHIEKNGIKMD 254
G WV + KNG +D
Sbjct: 269 MGRWVHDYAHKNGFVLD 285
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L + S L+ A +F+Q+P N+ +W +I AY + P ++F +F ++ + PNEF
Sbjct: 194 GLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVK-PNEF 252
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ +++A+ + +G+ +H F D + +LI Y+ CG L A VF ++
Sbjct: 253 TIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVM 312
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELY-REMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
K + +WNSMI+ G E+A+ L+ E +V+PD +T V VLSACA +++ G
Sbjct: 313 QGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDG 372
Query: 240 I 240
+
Sbjct: 373 L 373
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 14/224 (6%)
Query: 40 KRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H ++ + F D SA ++ C + E A K+FD++P+ ++ +WN +I
Sbjct: 126 KMVHTHVIKSGFAMDVVVMSSAVGMYAKCNV-----FEDAIKLFDEMPERDVASWNNVIS 180
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
Y +P ++ +F ++ S + P+ TL VI + AR + G+ IH F
Sbjct: 181 CYYQDGQPEKALELFEEMKV-SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFA 239
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D +S++L+ Y CG L MA VF I +K+VVSWNSMI+G+ G + IEL+R M
Sbjct: 240 LDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM 299
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ E ++P T+ +L AC++ +L+ G ++ +I +N ++ D+
Sbjct: 300 DEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADI 343
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 19/234 (8%)
Query: 15 PNPTTLT-VNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTF 70
P+ TLT V + R L + ++ K IH +++ + F D + +S L + C
Sbjct: 205 PDSVTLTTVISSCAR----LLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCG---- 256
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE A+++F+QI + N+ +WN++I YS + +F ++ P TL +
Sbjct: 257 -CLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM-DEEGIRPTLTTLSSI 314
Query: 131 IKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A +R V ++G+ IHG E D+ +++SLI Y CG++ A VF + K +V
Sbjct: 315 LMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNV 374
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
VSWN MISG+V+ G + +A+ ++ +M VKPD +T VL AC++ LE G
Sbjct: 375 VSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG 428
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 16/228 (7%)
Query: 37 KQLKRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQP-NLYTWN 92
KQ K IH +++S + S L+ C L + A+ +F I P ++ WN
Sbjct: 20 KQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHL-----FQSAKLVFQTIENPLDITLWN 74
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIH---- 147
L+ A + + I+ +F +L++ PY P+ FT P V+KA + + G+ +H
Sbjct: 75 GLMAACTKNFIFIEGLEVFHRLLH-FPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVI 133
Query: 148 -GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F D+V+ +S + YA C A +F + ++DV SWN++IS + + G EKA+E
Sbjct: 134 KSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALE 193
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
L+ EM+V KPD VT+ V+S+CA+ DLE G + + ++G +D
Sbjct: 194 LFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALD 241
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 27/246 (10%)
Query: 1 METLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASK 60
+ TLS+ +++ R N + G H + + N R+ A + D
Sbjct: 308 LTTLSSILMACSRSVN-----LQLGKFIHGYIIRN-----RVEADIFVNSSLID------ 351
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L+ C ++ A +F +P+ N+ +WN +I Y +++ +IF + +
Sbjct: 352 LYFKCG-----NIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDM-RKAGV 405
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
P+ T V+ A ++ G+ IH E + V+ +L+ YA CG + A
Sbjct: 406 KPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALH 465
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F + ++D VSW SMI+ + G +A++L+ +M+ + KPD+VT + +LSAC+
Sbjct: 466 IFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGL 525
Query: 236 LEFGIW 241
++ G +
Sbjct: 526 VDEGCY 531
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK- 183
++K + G+ IH ++++ + SLI+ Y C A VF I
Sbjct: 9 LLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL 68
Query: 184 DVVSWNSMISGFVEGGFFEKAIELY-REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
D+ WN +++ + F + +E++ R + +KPD T VL AC+ + +G V
Sbjct: 69 DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 128
Query: 243 SSHIEKNGIKMDLT 256
+H+ K+G MD+
Sbjct: 129 HTHVIKSGFAMDVV 142
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 126/237 (53%), Gaps = 21/237 (8%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF--SSLEYARKMFDQIPQPNL 88
H + LK+IHA ++++ D + SK+ S F + + FD + Q +L
Sbjct: 13 HRCKTIRSLKQIHAHLIASGLLHDEFVLSKV------SEFFGKHIGFVDYAFDFLNQTDL 66
Query: 89 YT----WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ +NTLI AY+SS P +F+++ ++V N + P+ +T P V+KA + + + G+
Sbjct: 67 HVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNG-FVPDMYTFPVVLKACTKFLGVQEGE 125
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+HG+ F DL + NSL+HFY+VCG A VF + +DVVSW +ISG+V G
Sbjct: 126 QVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTG 185
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
F++AI L+ +M+ V P+ T V VL AC + L G V + K + L
Sbjct: 186 LFDEAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLV 239
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
FL Q+ +++H + F D Y + L S A ++FD++ ++ +W
Sbjct: 118 FLGVQEG-EQVHGVAVKMGFLCDLYVQNSLLH--FYSVCGKWGGAGRVFDEMLVRDVVSW 174
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
LI Y + ++ +FL++ PN T V+ A R +G+ +HG+
Sbjct: 175 TGLISGYVRTGLFDEAINLFLKM----DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVY 230
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F LV+ N+L+ Y C L A +F + +D+VSW S+ISG V+ + ++E
Sbjct: 231 KRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLE 290
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
L+ +M++ V+PD + + VLSACA L++G WV +IE+ GI+ D+
Sbjct: 291 LFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDI 339
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD++P ++ +W ++I +P S +F + S P+ L V+ A A
Sbjct: 257 ARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQI-SGVEPDRIILTSVLSACA 315
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ + E D+ I +L+ YA CG + MA +F I +++ +WN+
Sbjct: 316 SLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNA 375
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++ G G +A++ + M ++P+EVT + +L+AC
Sbjct: 376 LLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACC 416
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 131/230 (56%), Gaps = 14/230 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T++ QL++IHA++L F + +KL A S++ + +AR++FD +P+P ++ WN
Sbjct: 32 THKAQLRQIHARLLVLGLQFSGFLITKLIH--ASSSYGDITFARQVFDDLPRPQVFPWNA 89
Query: 94 LIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+IR YS ++ + +++ +QL S P+ FT P ++KA ++G+ +H
Sbjct: 90 IIRGYSRNNHFQDALLMYSKMQLARVS---PDSFTFPHLLKACGGLSHLQMGRFVHAQVF 146
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKKDVVSWNSMISGFVEGGFFEKA 204
FE D+ + N LI YA C L A VF + + ++ +VSW +++S + + G +A
Sbjct: 147 RLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEA 206
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+E++ +M +VKPD V +V VL+A +DLE G + + + K G++ +
Sbjct: 207 LEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETE 256
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 121/241 (50%), Gaps = 20/241 (8%)
Query: 30 PHFLT-----NQKQLKR-IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI 83
PH L + Q+ R +HAQ+ F D + + L A L AR +F+ +
Sbjct: 123 PHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYA--KCRRLGCARTVFEGL 180
Query: 84 PQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
P P + +W ++ AY+ + EP+++ IF Q+ P+ L V+ A
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPVEALEIFSQM-RKMDVKPDCVALVSVLNAFTCLQDLE 239
Query: 142 VGQAIHGMF-------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
G++IH E DL+IS L YA CG +A A +F + +++ WN+MISG
Sbjct: 240 QGRSIHASVMKMGLETEPDLLIS--LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ + GF + AI+L+ EM ++V+PD +++ +SACA+ LE W+ ++ ++ + D
Sbjct: 298 YAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDD 357
Query: 255 L 255
+
Sbjct: 358 V 358
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 105/217 (48%), Gaps = 14/217 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + +Q + IHA ++ +P S + ++ C + A+ +FD++ PNL
Sbjct: 235 LQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCG-----QVATAKILFDKMKSPNLI 289
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI--- 146
WN +I Y+ + + +F +++ N P+ ++ I A A+ + +
Sbjct: 290 LWNAMISGYAKNGFAKDAIDLFHEMI-NKDVRPDTISITSAISACAQVGSLEQARWMDEY 348
Query: 147 --HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ DD+ IS++LI +A CG + A VF +DVV W++MI G+ G +A
Sbjct: 349 VSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREA 408
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
I LYR ME + V P++VT + +L AC + G W
Sbjct: 409 ISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWW 445
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%)
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
LIH + GD+ A VF + + V WN++I G+ F+ A+ +Y +M++ V PD
Sbjct: 59 LIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPD 118
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
T +L AC L+ G +V + + + G + D+
Sbjct: 119 SFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADV 154
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 10/224 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+ +I AQ++ + + A T C + L+ A +F +P+++ N+LIRA
Sbjct: 26 HIHQIQAQLIVQNLHSNTTIAHHFITAC--QSLGLLDSALLLFTHHSKPHVFICNSLIRA 83
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFE 151
+S + P F I+ + NS PN FT PF++K+ A GQ IH G F
Sbjct: 84 FSHNHTPHTPFSIYTHMHSNS-ILPNNFTFPFLLKSLADFKGLSEGQCIHTHVVKLGQF- 141
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DD+ + NSL++ YA CGD+ + VF + +DVVSW +I+G+ ++ A+ + +M
Sbjct: 142 DDIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDVVSWTVLITGYRSAERYDDALIAFEQM 201
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ V P+ VTMV LSACA LE G+W+ I ++G + D+
Sbjct: 202 QYAGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRSGWEFDV 245
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 8/203 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH ++ F D Y + L ++ + ++FD++P ++ +W LI Y S+
Sbjct: 131 IHTHVVKLGQFDDIYVQNSLLN--VYASCGDMGLCMRVFDEMPHRDVVSWTVLITGYRSA 188
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVI 156
+ + + F Q+ Y + PN T+ + A A +G IH +E D+++
Sbjct: 189 ERYDDALIAFEQMQY-AGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRSGWEFDVIL 247
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
SLI Y CG + VF + +K+V +WNS+I G +A+ + ME E +
Sbjct: 248 GTSLIDMYGKCGRIEEGLVVFRSMKEKNVFTWNSLIKGLALARSGAEAVWWFYRMEQEGI 307
Query: 217 KPDEVTMVVVLSACAKKRDLEFG 239
K DEVT++ VL AC+ ++ G
Sbjct: 308 KADEVTLIAVLCACSHSGMVQMG 330
>gi|224058585|ref|XP_002299553.1| predicted protein [Populus trichocarpa]
gi|222846811|gb|EEE84358.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+ ++HA++ F +P + ++L ++S ++++ YA+ +F+ PN + +N +IR
Sbjct: 40 EFAQLHARLTKLGFIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPNTFAYNVMIRG 99
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y+ ++P + +F ++ N+ PN+ T PFV+KA ++ G+ +HG+ +
Sbjct: 100 YAQREKPENALSLFYSMLCNANSGPNKLTFPFVLKACSQVRAIEEGKQVHGLVFKHGLSE 159
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL + NSLI+ Y+ CG + A VF I DVVSWNSMISG V+ GF E+ +++ M
Sbjct: 160 DLFVQNSLINMYSSCGLIGFACQVFNKIDDLDVVSWNSMISGLVDLGFVEEGKQMFDRM 218
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 45/179 (25%)
Query: 40 KRIHAQM----LSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
K++H + LS D F S +++ C L + +A ++F++I ++ +WN++I
Sbjct: 146 KQVHGLVFKHGLSEDLFVQN-SLINMYSSCGL-----IGFACQVFNKIDDLDVVSWNSMI 199
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV 155
L FV + Q M + LV
Sbjct: 200 SGL--------------------------VDLGFVEEGK---------QMFDRMSKRSLV 224
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
N LI Y G L A +F + K+ VSWN+MI G+V G E A + +M E
Sbjct: 225 TWNCLIDGYVKVGLLMEARELFDQMVGKNSVSWNTMIDGYVSLGLMEDAKGFFDKMPWE 283
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+ ++N MI G+ + E A+ L+ M N P+++T VL AC++ R +E G V
Sbjct: 89 NTFAYNVMIRGYAQREKPENALSLFYSMLCNANSGPNKLTFPFVLKACSQVRAIEEGKQV 148
Query: 243 SSHIEKNGIKMDL 255
+ K+G+ DL
Sbjct: 149 HGLVFKHGLSEDL 161
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 123/238 (51%), Gaps = 16/238 (6%)
Query: 27 QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP 86
QR H Q+ IHAQ++ DP+ +L C S +++YA ++F P
Sbjct: 40 QRSKHI----NQVLPIHAQLIRNGHSQDPFMVFELLRSC--SKCHAIDYASRIFQYTHNP 93
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
N+Y + LI + SS + ++ +++++S P+ + + ++KA + R G+ +
Sbjct: 94 NVYLYTALIDGFVSSGNYFDAIQLYSRMLHDS-ILPDNYLMASILKACGSQLALREGREV 152
Query: 147 HGMFEDDLVISNSLIHF-----YAVCGDLAMAYCVFVMIGK----KDVVSWNSMISGFVE 197
H + SN L+ Y CG+L A VF + + KD V W +MI GFV
Sbjct: 153 HSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVR 212
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+A+E +R M+ ENV+P+E T+V VLSAC++ LE G WV S++ K I+++L
Sbjct: 213 NEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNL 270
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 99/189 (52%), Gaps = 15/189 (7%)
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQ----PNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
+L+ C L AR++F+++P+ + W +I + ++E ++ F + +
Sbjct: 173 ELYGKCG-----ELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAF-RGM 226
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDL 170
PNEFT+ V+ A ++ +G+ +H E +L + N+LI+ Y+ CG +
Sbjct: 227 QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSI 286
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
A VF + +DV+++N+MISG G +AIEL+R M ++P VT V VL+AC
Sbjct: 287 DEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNAC 346
Query: 231 AKKRDLEFG 239
+ ++FG
Sbjct: 347 SHGGLVDFG 355
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 31/184 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S S++ A+ +FD++ ++ T+NT+I S + + Q+ +F +++ P T
Sbjct: 281 SRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF-RVMIGRRLRPTNVTF 339
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
V+ A + HG D I +S+ Y V + C+ ++G+
Sbjct: 340 VGVLNACS-----------HGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRV--- 385
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G E+A +L R M++ PD + + +LSAC ++LE G V+ +
Sbjct: 386 ------------GRLEEAYDLIRTMKM---TPDHIMLGTLLSACKMHKNLELGEQVAKVL 430
Query: 247 EKNG 250
E G
Sbjct: 431 EDRG 434
>gi|356570151|ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 465
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 118/227 (51%), Gaps = 12/227 (5%)
Query: 34 TNQKQLKRIHAQML-STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
T QLK++HAQM+ S DP++AS+LF CALS F L A ++F P+PN + WN
Sbjct: 29 TTLDQLKQVHAQMIVSAVVATDPFAASRLFFSCALSPFGDLSLAFRIFHSTPRPNSFMWN 88
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----- 147
TLIRA + + + ++ + S P + T PF++KA AR F Q +H
Sbjct: 89 TLIRAQTHAPHALSLYVA----MRRSNVLPGKHTFPFLLKACARVRSFTASQQVHVHVIK 144
Query: 148 -GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
G+ D V+ ++L+ Y+V G A VF +K W +M+ G+ + +A+
Sbjct: 145 FGLDFDSHVV-DALVRCYSVSGHCVSARQVFDETPEKISSLWTTMVCGYAQNFCSNEALR 203
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
L+ +M E +P T+ VLSACA+ LE G + ++ G+ +
Sbjct: 204 LFEDMVGEGFEPGGATLASVLSACARSGCLELGERIHEFMKVKGVGL 250
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 11/208 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H ++ FD + L S AR++FD+ P+ W T++ Y+
Sbjct: 136 QQVHVHVIKFGLDFDSHVVDALVR--CYSVSGHCVSARQVFDETPEKISSLWTTMVCGYA 193
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-------D 152
+ ++ +F +V + P TL V+ A AR +G+ IH + +
Sbjct: 194 QNFCSNEALRLFEDMV-GEGFEPGGATLASVLSACARSGCLELGERIHEFMKVKGVGLGE 252
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+++ +L++ YA G++AMA +F + +++VV+WN+MI G G+ + A+ L+ +M+
Sbjct: 253 GVILGTALVYMYAKNGEIAMARRLFDEMPERNVVTWNAMICGLGAYGYVDDALGLFEKMK 312
Query: 213 VEN-VKPDEVTMVVVLSACAKKRDLEFG 239
E V P+ VT V VLSAC ++ G
Sbjct: 313 KEGVVVPNGVTFVGVLSACCHAGLIDVG 340
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
GDL++A+ +F + + WN++I A+ LY M NV P + T +L
Sbjct: 67 GDLSLAFRIFHSTPRPNSFMWNTLIRAQTHA---PHALSLYVAMRRSNVLPGKHTFPFLL 123
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMD 254
ACA+ R V H+ K G+ D
Sbjct: 124 KACARVRSFTASQQVHVHVIKFGLDFD 150
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 16/222 (7%)
Query: 27 QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS------TFSSLEYARKMF 80
+R +TN L++IHA M+ F + KL A+S T + +YA +MF
Sbjct: 5 RRGRSTITNLGTLRQIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMF 64
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
QIPQP+ + WNT IR S S +P+ + ++ Q+ + S P+ FT P V+KA +
Sbjct: 65 AQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVK-PDNFTFPLVLKACTKLFWV 123
Query: 141 RVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
G +HG F ++V+ N+L+ F+A CGDL +A +F K DVV+W+++I+G+
Sbjct: 124 NTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGY 183
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ G A +L+ EM K D V+ V+++A K ++E
Sbjct: 184 AQRGDLSVARKLFDEMP----KRDLVSWNVMITAYTKHGEME 221
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 97/180 (53%), Gaps = 9/180 (5%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + +E AR++FD+ P ++ +WN ++ Y + ++ +F ++ P+E
Sbjct: 213 AYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMC-EVGECPDEV 271
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED------DLVISNSLIHFYAVCGDLAMAYCVFVM 179
T+ ++ A A G+ +H + ++ N+L+ YA CG++ CVF +
Sbjct: 272 TMLSLLSACADLGD--XGEKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGVCVFWL 329
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
I KD+VSWNS+I G G E+++ L+REM+ V PDE+T V VL+AC+ +++ G
Sbjct: 330 IRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDEG 389
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 133/230 (57%), Gaps = 14/230 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T++ QLK+IHA++L F + +KL A S+F + +AR++FD +P+P ++ WN
Sbjct: 32 THKAQLKQIHARLLVLGLQFSGFLITKLIH--ASSSFGDITFARQVFDDLPRPQIFPWNA 89
Query: 94 LIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+IR YS ++ + +++ +QL SP + FT P ++KA + ++G+ +H
Sbjct: 90 IIRGYSRNNHFQDALLMYSNMQLARVSP---DSFTFPHLLKACSGLSHLQMGRFVHAQVF 146
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKKDVVSWNSMISGFVEGGFFEKA 204
F+ D+ + N LI YA C L A VF + + ++ +VSW +++S + + G +A
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+E++ +M +VKPD V +V VL+A +DL+ G + + + K G++++
Sbjct: 207 LEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE 256
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + KQ + IHA ++ +P S + ++ C + A+ +FD++ PNL
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCG-----QVATAKILFDKMKSPNLI 289
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-- 147
WN +I Y+ + ++ +F +++ N P+ ++ I A A+ ++++
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMI-NKDVRPDTISITSAISACAQVGSLEQARSMYEY 348
Query: 148 ---GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ DD+ IS++LI +A CG + A VF +DVV W++MI G+ G +A
Sbjct: 349 VGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREA 408
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
I LYR ME V P++VT + +L AC + G W
Sbjct: 409 ISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 20/223 (8%)
Query: 30 PHFLT-----NQKQLKR-IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI 83
PH L + Q+ R +HAQ+ F D + + L A L AR +F+ +
Sbjct: 123 PHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYA--KCRRLGSARTVFEGL 180
Query: 84 PQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
P P + +W ++ AY+ + EP+++ IF Q+ P+ L V+ A +
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM-RKMDVKPDWVALVSVLNAFTCLQDLK 239
Query: 142 VGQAIHGM-------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
G++IH E DL+IS L YA CG +A A +F + +++ WN+MISG
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLIS--LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ + G+ +AI+++ EM ++V+PD +++ +SACA+ LE
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLE 340
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
LIH + GD+ A VF + + + WN++I G+ F+ A+ +Y M++ V PD
Sbjct: 59 LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPD 118
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
T +L AC+ L+ G +V + + + G D+
Sbjct: 119 SFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADV 154
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 133/278 (47%), Gaps = 46/278 (16%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
P+ T V + + + L R+HA + Y A+++ C + +
Sbjct: 5 PSSATRQVEDAVMASLRACASFRDLLRVHAHAVRLSLSQSSYLATQIVHLC--NAHGRVA 62
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-------NEFTL 127
+A ++F Q+ +PNL+ N +I+AY+ + + + ++++++ P FP + FT
Sbjct: 63 HATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRP-FPWISCTGGDRFTY 121
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
PF++KA + +G+ +HG E + ++ NSLI Y GDL +A VF + +
Sbjct: 122 PFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQE 181
Query: 183 KDVVSWNSMI-------------------------------SGFVEGGFFEKAIELYREM 211
+DVVSWN++I SG+ G F A+E +R M
Sbjct: 182 RDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLM 241
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
++E +PD+V++V VL ACA+ LE G W+ ++ ++
Sbjct: 242 QMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRH 279
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 98/182 (53%), Gaps = 9/182 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + + AR +F+ +P + +W L+ Y+++ + + F +L+ + P++
Sbjct: 193 AHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAF-RLMQMEGFEPDDV 251
Query: 126 TLPFVIKAAARPVQFRVGQAI------HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
++ V+ A A+ +G+ I H M + V N+L+ YA CG + A +F
Sbjct: 252 SIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYV-CNALVEMYAKCGCIDQALQLFNG 310
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEF 238
+ +KDV+SW++M+ G G ++A++L+ EME + VKP+ +T V +LSAC+ L+
Sbjct: 311 MAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDE 370
Query: 239 GI 240
G+
Sbjct: 371 GL 372
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 8/221 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q + +HA +L + F D + L A SLE ARK+F+++PQ + TW TLI
Sbjct: 78 QGRIVHAHILQSIFRHDIVMGNTLLNMYA--KCGSLEEARKVFEKMPQRDFVTWTTLISG 135
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS D P + + F Q++ Y PNEFTL VIKAAA + G +HG F+
Sbjct: 136 YSQHDRPCDALLFFNQML-RFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDS 194
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++ + ++L+ Y G + A VF + ++ VSWN++I+G EKA+EL++ M
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
+ +P + + AC+ LE G WV +++ K+G K+
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL 295
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 97/189 (51%), Gaps = 6/189 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ + ++ A+ +FD + N +WN LI ++ ++ +F Q + + P+ F+
Sbjct: 207 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELF-QGMLRDGFRPSHFSY 265
Query: 128 PFVIKAAARPVQFRVGQAIHGMF---EDDLVI--SNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A + G+ +H + LV N+L+ YA G + A +F + K
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 325
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DVVSWNS+++ + + GF ++A+ + EM ++P+E++ + VL+AC+ L+ G
Sbjct: 326 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 385
Query: 243 SSHIEKNGI 251
++K+GI
Sbjct: 386 YELMKKDGI 394
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q K +HA M+ + ++ + L A S S+ ARK+FD++ + ++ +WN+L+
Sbjct: 279 EQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKS--GSIHDARKIFDRLAKRDVVSWNSLLT 336
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
AY+ ++ F ++ PNE + V+ A + G + + + D ++
Sbjct: 337 AYAQHGFGKEAVWWFEEM-RRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIV 395
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+ H+ V L A G +A+ EM +E
Sbjct: 396 PEAW-HYVTVVDLLGRA-------------------------GDLNRALRFIEEMPIE-- 427
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
P +L+AC ++ E G + + H+
Sbjct: 428 -PTAAIWKALLNACRMHKNTELGAYAAEHV 456
>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 8/221 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q + +HA +L + F D + L A SLE ARK+F+++PQ + TW TLI
Sbjct: 78 QGRIVHAHILQSIFRHDIVMGNTLLNMYA--KCGSLEEARKVFEKMPQRDFVTWTTLISG 135
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS D P + + F Q++ Y PNEFTL VIKAAA + G +HG F+
Sbjct: 136 YSQHDRPCDALLFFNQML-RFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDS 194
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++ + ++L+ Y G + A VF + ++ VSWN++I+G EKA+EL++ M
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
+ +P + + AC+ LE G WV +++ K+G K+
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL 295
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 97/189 (51%), Gaps = 6/189 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ + ++ A+ +FD + N +WN LI ++ ++ +F Q + + P+ F+
Sbjct: 207 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELF-QGMLRDGFRPSHFSY 265
Query: 128 PFVIKAAARPVQFRVGQAIHGMF---EDDLVI--SNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A + G+ +H + LV N+L+ YA G + A +F + K
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 325
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DVVSWNS+++ + + GF ++A+ + EM ++P+E++ + VL+AC+ L+ G
Sbjct: 326 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 385
Query: 243 SSHIEKNGI 251
++K+GI
Sbjct: 386 YELMKKDGI 394
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q K +HA M+ + ++ + L A S S+ ARK+FD++ + ++ +WN+L+
Sbjct: 279 EQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKS--GSIHDARKIFDRLAKRDVVSWNSLLT 336
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
AY+ ++ F ++ PNE + V+ A + G + + + D ++
Sbjct: 337 AYAQHGFGKEAVWWFEEM-RRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIV 395
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+ H+ V L A G +A+ EM +E
Sbjct: 396 PEAW-HYVTVVDLLGRA-------------------------GDLNRALRFIEEMPIE-- 427
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
P +L+AC ++ E G + + H+
Sbjct: 428 -PTAAIWKALLNACRMHKNTELGAYAAEHV 456
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 16/222 (7%)
Query: 27 QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS------TFSSLEYARKMF 80
+R +TN LK+IHA M+ + KL A+S T + + YA +MF
Sbjct: 5 RRGRSTITNVGTLKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMF 64
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
QIPQP+ + WNT IR S S +P+ + ++ Q+ S P+ FT PFV+KA +
Sbjct: 65 AQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVK-PDNFTFPFVLKACTKLFWV 123
Query: 141 RVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
G A+HG F ++V+ N+L+ F+A CGDL +A +F K DVV+W+++I+G+
Sbjct: 124 NTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGY 183
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ G A +L+ EM K D V+ V+++ K ++E
Sbjct: 184 AQRGDLSVARKLFDEMP----KRDLVSWNVMITVYTKHGEME 221
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 99/175 (56%), Gaps = 7/175 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E AR++FD+ P ++ +WN LI Y + ++ +F ++ P+E T+ +
Sbjct: 218 GEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMC-GVGECPDEVTMLSL 276
Query: 131 IKAAARPVQFRVGQAIHG----MFEDDL--VISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+ A A G+ +H M + L ++ N+L+ YA CG++ A VF +I KD
Sbjct: 277 LSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKD 336
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
VVSWNS+ISG G E+++ L+REM++ V PDEVT V VL+AC+ +++ G
Sbjct: 337 VVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEG 391
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 123/246 (50%), Gaps = 12/246 (4%)
Query: 6 TPVISIPRH-PNPTTLTVNNGHQRHPHFLTNQ----KQLKRIHAQMLSTDFFFDPYSASK 60
VI+ P H P+ + + + H R N QLK++HAQ + T P +
Sbjct: 4 AAVIAPPSHLPHAISNSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPNTFFL 63
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS-SSDEPIQSFMIFLQLVYNSP 119
S+ L YA ++F QI PN + WN LIRA + S+D + ++ +++
Sbjct: 64 YSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGS 123
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAY 174
++ T PFV+KA A G+ IH F+ D+ I+NSL+HFYA C L A
Sbjct: 124 VMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAK 183
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
VF + ++ +VSWN +I FV G F+ A+ L+ EM+ + +PD T+ + +ACA
Sbjct: 184 GVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQ-KFFEPDGYTIQSIANACAGMG 242
Query: 235 DLEFGI 240
L GI
Sbjct: 243 SLSLGI 248
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 11/192 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IHAQ+L F D Y + L A T L++A+ +FD++ + +L +WN +I A+
Sbjct: 148 EQIHAQILKLGFDSDVYINNSLVHFYA--TCDRLDFAKGVFDRMSERSLVSWNVVIDAFV 205
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS 159
E + +F ++ + P+ +T+ + A A +G +D++++ S
Sbjct: 206 RFGEFDAALNLFGEM--QKFFEPDGYTIQSIANACAGMGSLSLG------IVNDVLLNTS 257
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKP 218
L+ Y CG L +A +F + K+DV SWNSMI GF G A+E + M E + P
Sbjct: 258 LVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMP 317
Query: 219 DEVTMVVVLSAC 230
+ +T V VLSAC
Sbjct: 318 NAITFVGVLSAC 329
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 10/148 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SLE A ++F ++P+ ++ +WN++I +S+ E + F +V PN T V
Sbjct: 266 GSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGV 325
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAY-------CVFVMIGKK 183
+ A G+ + + I L H+ + LA A V M +
Sbjct: 326 LSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRP 385
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREM 211
D+V W S++ + +EL EM
Sbjct: 386 DLVIWRSLLDACCKQ---NAGVELSEEM 410
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 132/230 (57%), Gaps = 14/230 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T++ QLK+IHA++L F + +KL A S+F + +AR++FD +P+P ++ WN
Sbjct: 32 THKAQLKQIHARLLVLGLQFSGFLITKLIH--ASSSFGDITFARQVFDDLPRPQIFPWNA 89
Query: 94 LIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+IR YS ++ + +++ +QL SP + FT P ++KA + ++G+ +H
Sbjct: 90 IIRGYSRNNHFQDALLMYSNMQLARVSP---DSFTFPHLLKACSGLSHLQMGRFVHAQVF 146
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKKDVVSWNSMISGFVEGGFFEKA 204
F+ D+ + N LI YA C L A VF + + ++ +VSW +++S + + G +A
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+E++ M +VKPD V +V VL+A +DL+ G + + + K G++++
Sbjct: 207 LEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE 256
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + KQ + IHA ++ +P S + ++ C + A+ +FD++ PNL
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCG-----QVATAKILFDKMKSPNLI 289
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-- 147
WN +I Y+ + ++ +F +++ N P+ ++ I A A+ ++++
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMI-NKDVRPDTISITSAISACAQVGSLEQARSMYEY 348
Query: 148 ---GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ DD+ IS++LI +A CG + A VF +DVV W++MI G+ G +A
Sbjct: 349 VGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREA 408
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
I LYR ME V P++VT + +L AC + G W
Sbjct: 409 ISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 20/223 (8%)
Query: 30 PHFLT-----NQKQLKR-IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI 83
PH L + Q+ R +HAQ+ F D + + L A L AR +F+ +
Sbjct: 123 PHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYA--KCRRLGSARTVFEGL 180
Query: 84 PQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
P P + +W ++ AY+ + EP+++ IF + P+ L V+ A +
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPMEALEIFSHM-RKMDVKPDWVALVSVLNAFTCLQDLK 239
Query: 142 VGQAIHGM-------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
G++IH E DL+IS L YA CG +A A +F + +++ WN+MISG
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLIS--LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ + G+ +AI+++ EM ++V+PD +++ +SACA+ LE
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLE 340
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
LIH + GD+ A VF + + + WN++I G+ F+ A+ +Y M++ V PD
Sbjct: 59 LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPD 118
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
T +L AC+ L+ G +V + + + G D+
Sbjct: 119 SFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADV 154
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 130/270 (48%), Gaps = 48/270 (17%)
Query: 18 TTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYAR 77
T+L N H H L +IH ML D S+ C SS YA
Sbjct: 28 TSLLSNCRHHLH---------LYQIHGFMLHRALDQDNLFLSQFIDACTSLGLSS--YAF 76
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
+F P+L +NT I+A S + PI + ++ ++ + P+ +++P V+KA +
Sbjct: 77 SIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDG-LRPDSYSIPSVLKAVVKL 135
Query: 138 VQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
VG+ IH + D+ ++ SLI Y+ CG ++ A +F +G KDV WN+M+
Sbjct: 136 SAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMV 195
Query: 193 SGFVEGGFFE-------------------------------KAIELYREMEVENVKPDEV 221
+G+V+ G + +AIEL+R+M++E V+PDE+
Sbjct: 196 AGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEI 255
Query: 222 TMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
M+ VLSACA LE G W+ ++IEK+G+
Sbjct: 256 AMLAVLSACADLGALELGEWIHNYIEKHGL 285
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 96/172 (55%), Gaps = 6/172 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ ARK+F+++PQ N+ +W TLI Y+ ++ P ++ +F ++ P+E + V+
Sbjct: 204 LKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVE-PDEIAMLAVLS 262
Query: 133 AAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A +G+ IH E + + N+LI YA G++ A VF + +K V++
Sbjct: 263 ACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVIT 322
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
W+++I+ G +AI+++ ME V+P+EVT V +LSAC+ ++ G
Sbjct: 323 WSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVG 374
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 113/216 (52%), Gaps = 17/216 (7%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
LK+IHAQML + SK+ L YA +F+Q+ +PN+Y +N ++R
Sbjct: 49 LKQIHAQMLINSIPKPNFLLSKIID------LKDLAYASLVFNQLTKPNIYAFNVMLRGL 102
Query: 99 SSSDEPIQSFMIFLQLVYNSPYF---PNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
+++ + + ++L Y N FT PF+ A G+ H +
Sbjct: 103 ATT---WKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGL 159
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ D +++SLI YA CG++ A VF +G +D+VSWNSMISG+ + GF ++AI L+ E
Sbjct: 160 DGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFME 219
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
M E +PDE+T+V VL AC DL G WV +
Sbjct: 220 MREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFV 255
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 8/218 (3%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
H + D Y L T A + +ARK+FD++ +L +WN++I YS
Sbjct: 151 HCLVFKAGLDGDEYVNHSLITMYA--RCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMG 208
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVIS 157
++ +F+++ + P+E TL V+ A +G+ + G E + +
Sbjct: 209 FTKEAIGLFMEM-REEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMG 267
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
++LI Y CGDL A VF + KDVV+WN++I+G+ + G +AI L+ M
Sbjct: 268 SALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPH 327
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
PD VTM+ VLSAC+ L+ G WV +H + G++ D+
Sbjct: 328 PDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDV 365
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 8/162 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD +P ++ TWN +I Y+ + ++ ++F + P+ P+ T+ V+ A +
Sbjct: 283 ARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPH-PDRVTMIEVLSACS 341
Query: 136 RPVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ A + D+ ++++LI YA CG L A VF + K+ VSWN+
Sbjct: 342 TIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNA 401
Query: 191 MISGFVEGGFFEKAIELYREMEVEN--VKPDEVTMVVVLSAC 230
MIS G ++A+ L+R M +N V+P+++T + VLSAC
Sbjct: 402 MISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSAC 443
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 127/248 (51%), Gaps = 20/248 (8%)
Query: 26 HQRHPH------FLTNQKQLK---RIHAQMLSTDFFFDPYSASKLFT-PCALSTFSSLEY 75
H +HPH L +LK ++HA ++ + + + +KL CA S+ Y
Sbjct: 6 HHKHPHSPAYNLLLQAGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAG---SISY 62
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSS-SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
R++F +P P+ + + +LIR+ S + + S + ++V S P+ +T VIK+
Sbjct: 63 TRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVL-SNVAPSNYTFTSVIKSC 121
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A V R G+ IHG F D+ + +L+ FY CG L A VF + + VV+WN
Sbjct: 122 ADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWN 181
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
SMISG+ + GF ++AI L+ M+ V+P+ T V VLSACA G WV + N
Sbjct: 182 SMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGN 241
Query: 250 GIKMDLTF 257
G+ +++
Sbjct: 242 GLDLNVVL 249
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 103/198 (52%), Gaps = 14/198 (7%)
Query: 42 IHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
IH +L F D Y + L + C + L ARK+FD++ ++ TWN++I Y
Sbjct: 133 IHGHVLVNGFGSDVYVQTALMSFYGKCGV-----LCNARKVFDKMRDRSVVTWNSMISGY 187
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDD 153
+ ++ +F ++ PN T V+ A A F +G +H + +
Sbjct: 188 EQNGFAKEAIRLFDRM-KEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLN 246
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+V+ SLI+ Y CG+++ A VF + +++VV+W +MISG+ G+ +A+EL+ EM
Sbjct: 247 VVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRR 306
Query: 214 ENVKPDEVTMVVVLSACA 231
+ P+ +T V VLSACA
Sbjct: 307 NGLLPNSITFVAVLSACA 324
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 9/224 (4%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + Q K+ H +L D Y + L F++ +YA +F Q P PN++ +N
Sbjct: 13 LKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSL--HFAATQYATVVFAQTPHPNIFLYN 70
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR-PVQFRVGQAIHGM-- 149
TLIR S+D + ++ + + + P+ FT PFV+KA R P F VG ++H +
Sbjct: 71 TLIRGMVSNDAFRDAVSVYASMRQHG-FAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVI 129
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F+ D+ + L+ Y+ G L A VF I +K+VVSW ++I G++E G F +A+
Sbjct: 130 KTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALG 189
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
L+R + ++PD T+V +L AC++ DL G W+ ++ ++G
Sbjct: 190 LFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESG 233
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 11/227 (4%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN 87
R PH+ L H+ ++ T F +D + + L C S L ARK+FD+IP+ N
Sbjct: 113 RLPHYFHVGLSL---HSLVIKTGFDWDVFVKTGLV--CLYSKNGFLTDARKVFDEIPEKN 167
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
+ +W +I Y S ++ +F L+ P+ FTL ++ A +R G+ I
Sbjct: 168 VVSWTAIICGYIESGCFGEALGLFRGLL-EMGLRPDSFTLVRILYACSRVGDLASGRWID 226
Query: 148 GMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
G + ++ ++ SL+ YA CG + A VF + +KDVV W+++I G+ G +
Sbjct: 227 GYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPK 286
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+A++++ EM+ ENV+PD MV V SAC++ LE G W ++ +
Sbjct: 287 EALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGD 333
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+E AR++FD + + ++ W+ LI+ Y+S+ P ++ +F ++ + P+ + + V
Sbjct: 252 GSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVR-PDCYAMVGV 310
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDV 185
A +R +G G+ + D +SN +LI FYA CG +A A VF + +KD
Sbjct: 311 FSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDC 370
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
V +N++ISG G A ++ +M ++PD T V +L C
Sbjct: 371 VVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGC 415
>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 572
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 8/220 (3%)
Query: 41 RIHAQMLSTDFFFDPYSA--SKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
++H Q++ S SK+FT ALS F L YAR + P N Y +NTL+RA+
Sbjct: 11 QVHGQVVKLGMGHKDASRKLSKVFTFAALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAF 70
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
S + P F L L + P P+ FT PF++K +R +G+ +H + F D
Sbjct: 71 SQTPLPTPPFHA-LSLFLSMPSPPDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPD 129
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L I N L+H Y+ GDL +A +F + +DVVSW SMI G V +AI L+ M
Sbjct: 130 LYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQ 189
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
V+ +E T++ VL ACA L G V +++E+ GI++
Sbjct: 190 CGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEI 229
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 112/221 (50%), Gaps = 11/221 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++HA + F D Y + L S F L AR +FD++P ++ +W ++I
Sbjct: 115 KQLHALLTKLGFAPDLYIQNVLLH--MYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLV 172
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV---- 155
+ D P+++ +F +++ NE T+ V++A A +G+ +H E+ +
Sbjct: 173 NHDLPVEAINLFERMLQCGVEV-NEATVISVLRACADSGALSMGRKVHANLEEWGIEIHS 231
Query: 156 ---ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+S +L+ YA G +A A VF + +DV W +MISG G + AI+++ +ME
Sbjct: 232 KSNVSTALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDME 291
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN-GIK 252
VKPDE T+ VL+AC + G + S +++ G+K
Sbjct: 292 SSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMK 332
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 37/237 (15%)
Query: 58 ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117
AS+L + A+S++ ++++ ++F QIP P + WN++IR +S P S +F++++
Sbjct: 40 ASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKML-R 98
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHF--------- 163
P+ T PFV KA AR + R+ A+H D I+NSLIH
Sbjct: 99 FGVCPDHLTYPFVAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGS 158
Query: 164 ----------------------YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
YA CGDL A+ VF + +DVVSW+SMI G V+GG +
Sbjct: 159 ARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEY 218
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
A+ ++ M V K + VTMV VL ACA LE G + ++ N ++ L
Sbjct: 219 GVALAIFERMRVVGPKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMRFTLVLR 275
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ A ++F +P ++ +W+++I E + IF ++ P N T+ V
Sbjct: 185 GDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPK-ANXVTMVSV 243
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVF--VMIGKK 183
+ A A G+ +H D+ LV+ SL+ YA CG + A VF V + +
Sbjct: 244 LCACAHLGALEXGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQT 303
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
DV+ WN++I G G +++EL++EM+V + PDE+T + + SACA
Sbjct: 304 DVLMWNTIIGGLATHGLVXESLELFKEMQVLGIVPDEITYLCLFSACA 351
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 115/212 (54%), Gaps = 14/212 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTP-CALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
K K++HAQ+ F FD A+KL C + SS AR +FD+IP+ N++ WN LI
Sbjct: 92 KPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSS---ARLLFDRIPKHNIFLWNVLI 148
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMF 150
R Y+ + + ++ Q+ ++ P+ FT PFV+KA A G+ IH +
Sbjct: 149 RGYAWNGPYEAAVQLYYQM-FDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGW 207
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD---VVSWNSMISGFVEGGFFEKAIEL 207
E D+ + +LI YA CG + A VF I +D VVSWN+MI+G+ G +A++L
Sbjct: 208 EKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDL 267
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ EM KPD +T V VLSAC+ LE G
Sbjct: 268 FEEMN-RVAKPDHITFVGVLSACSHGGLLEEG 298
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
Query: 118 SPYFPNEFTL--PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYC 175
+P + N +L + + A +P + Q F D VI+ L++ Y VC L+ A
Sbjct: 72 TPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARL 131
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F I K ++ WN +I G+ G +E A++LY +M + PD T VL ACA
Sbjct: 132 LFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSA 191
Query: 236 LEFGIWVSSHIEKNGIKMDL 255
+E G + H+ + G + D+
Sbjct: 192 IEHGREIHEHVVQTGWEKDV 211
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 114/215 (53%), Gaps = 7/215 (3%)
Query: 46 MLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI 105
M++ + DP + L ALS S++ A +F QI +P L WN +IR +S SD+P
Sbjct: 1 MVNPNLRTDPSTIYNLIKSYALSP-STILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPN 59
Query: 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSL 160
++ ++ L+Y N T F+ KA AR G IH FE L +SN+L
Sbjct: 60 EAIRMY-NLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNAL 118
Query: 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220
I+ Y CG L +A VF + ++D+VSWNS++ G+ + F + + ++ M V VK D
Sbjct: 119 INMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDA 178
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
VTMV V+ AC + + +IE+N +++D+
Sbjct: 179 VTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDV 213
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 6/183 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+L AR++FD + Q ++ +W +I +YS + + ++ +F +++ S P+E T+ V
Sbjct: 258 GNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMM-ESKVKPDEITVASV 316
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A VG+A H + D+ + N+LI Y CG + A VF + KKD
Sbjct: 317 LSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDS 376
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VSW S+ISG GF + A++ + M E V+P V +L ACA ++ G+
Sbjct: 377 VSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFES 436
Query: 246 IEK 248
+EK
Sbjct: 437 MEK 439
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 39/250 (15%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IHA++L F Y ++ L + L A+K+FD++P+ +L +WN+L+ Y
Sbjct: 99 IHARVLKLGFESHLYVSNALIN--MYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQC 156
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI--------------- 146
+ +F + + + + T+ V+ A ++ V A+
Sbjct: 157 KRFREVLGVF-EAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYL 215
Query: 147 -----------------HGMFED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
G+F+ +LV N++I Y G+L A +F + ++DV
Sbjct: 216 GNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDV 275
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+SW +MI+ + + G F +A+ L++EM VKPDE+T+ VLSACA L+ G +
Sbjct: 276 ISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDY 335
Query: 246 IEKNGIKMDL 255
I+K +K D+
Sbjct: 336 IQKYDVKADI 345
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 16/243 (6%)
Query: 5 STPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQL---KRIHAQMLSTDFFFDPYSASKL 61
+ V S P P PTT + G+ + K L K++HAQ ++ A+KL
Sbjct: 34 TASVDSFP--PQPTT---HYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKL 88
Query: 62 FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
A+S +SL AR +FD+IP+ NL+ WN LIR Y+ + P + +I + +
Sbjct: 89 VHLYAVS--NSLLNARNLFDKIPKQNLFLWNVLIRGYAW-NGPHDNAIILYHKMLDYGLR 145
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ FTLPFV+KA + G++IH +E DL + +LI YA CG + A V
Sbjct: 146 PDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRV 205
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F I +D V WNSM++ + + G +++I L REM V+P E T+V V+S+ A L
Sbjct: 206 FDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACL 265
Query: 237 EFG 239
+G
Sbjct: 266 PYG 268
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 95/169 (56%), Gaps = 7/169 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A ++FD+I + WN+++ AY+ + P +S + ++ N P E TL VI ++A
Sbjct: 202 AGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVR-PTEATLVTVISSSA 260
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ IHG F+ + + +LI YA CG + +A +F + +K VVSWN+
Sbjct: 261 DVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNA 320
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+I+G+ G A++L+ +M E+ +PD +T V VL+AC++ R L+ G
Sbjct: 321 IITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEG 368
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
++ L+H YAV L A +F I K+++ WN +I G+ G + AI LY +M
Sbjct: 84 LATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYG 143
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++PD T+ VL AC+ + G + ++ K+G + DL
Sbjct: 144 LRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDL 183
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 20/235 (8%)
Query: 31 HFLTNQKQLK------RIHAQMLSTDFFFDPYSASKLFTPCAL-STFSSLEYARKMFDQI 83
H L N +LK +IH+Q+++T+ + S + + T L + S+ + +F+
Sbjct: 102 HLLNNAAKLKSLKHATQIHSQLVTTN---NHASLANINTLLLLYAKCGSIHHTLLLFNTY 158
Query: 84 PQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
P P N+ TW TLI S S++P Q+ + F + + +PN FT ++ A A
Sbjct: 159 PHPSTNVVTWTTLINQLSRSNKPFQA-LTFFNRMRTTGIYPNHFTFSAILPACAHAALLS 217
Query: 142 VGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
GQ IH + F +D ++ +L+ YA CG + +A VF + +++VSWNSMI GFV
Sbjct: 218 EGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFV 277
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ + +AI ++RE V ++ PD+V++ VLSACA +L+FG V I K G+
Sbjct: 278 KNKLYGRAIGVFRE--VLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGL 330
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 13/227 (5%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNL 88
H L+ +Q IHA + F DP+ A+ L A S+ A +FD++P NL
Sbjct: 212 HAALLSEGQQ---IHALIHKHCFLNDPFVATALLDMYA--KCGSMLLAENVFDEMPHRNL 266
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+WN++I + + ++ +F +++ P++ ++ V+ A A V+ G+ +HG
Sbjct: 267 VSWNSMIVGFVKNKLYGRAIGVFREVL---SLGPDQVSISSVLSACAGLVELDFGKQVHG 323
Query: 149 -MFEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
+ + LV + NSL+ Y CG A +F G +DVV+WN MI G FE+
Sbjct: 324 SIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQ 383
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
A ++ M E V+PDE + + A A L G + SH+ K G
Sbjct: 384 ACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTG 430
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 16/209 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++H ++ Y + L + C L E A K+F ++ TWN +I
Sbjct: 319 KQVHGSIVKRGLVGLVYVKNSLVDMYCKCGL-----FEDATKLFCGGGDRDVVTWNVMIM 373
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMF 150
Q+ F Q + P+E + + A+A G IH G
Sbjct: 374 GCFRCRNFEQACTYF-QAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHV 432
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
++ IS+SL+ Y CG + AY VF + +VV W +MI+ F + G +AI+L+ E
Sbjct: 433 KNSR-ISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEE 491
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFG 239
M E V P+ +T V VLSAC+ ++ G
Sbjct: 492 MLNEGVVPEYITFVSVLSACSHTGKIDDG 520
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 101/185 (54%), Gaps = 9/185 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD++ ++ +W L+ A+ F L LV PNE TL V+ A
Sbjct: 167 ARRVFDEMASRDVVSWTALVSAFVRGGR----FAEALVLVGQMDVVPNEGTLACVLVACG 222
Query: 136 RPVQFRVGQAIHGMF---EDDL--VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R R G+A+HG + E DL ++ N+++ Y C L +A VF + +DV+SW
Sbjct: 223 RLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTI 282
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG V+ KA+E++ EM+ VKPD+V + VLSAC LE G WV +IE+ G
Sbjct: 283 MISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKG 342
Query: 251 IKMDL 255
I+ D+
Sbjct: 343 IEWDV 347
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 17/162 (10%)
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV---YNSPYFPNEFTLPFVIKAAARPVQFR 141
+ + + +N LI + S EP +F F L+ P P+ +TLP +KA AR
Sbjct: 65 RASAHPFNALISHLTLSGEPSSAFRTFAALLAAGRGEPRRPDGYTLPATLKACARLGAGG 124
Query: 142 V------GQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ +H G F L + N+L+ Y VCG+ A VF + +DVVSW +
Sbjct: 125 DDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFDEMASRDVVSWTA 184
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
++S FV GG F +A+ L +M +V P+E T+ VL AC +
Sbjct: 185 LVSAFVRGGRFAEALVLVGQM---DVVPNEGTLACVLVACGR 223
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 6/173 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ AR++FD++ ++ +W +I P ++ +F ++ S P++ L V+
Sbjct: 262 LDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFNEM-QKSRVKPDKVVLSTVLS 320
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A G+ +H E D+ + SL+ YA CG L + +F + K++ S
Sbjct: 321 ACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSS 380
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
WN++I+GF G +A+E + M + P+EV+ ++VL AC ++ G+
Sbjct: 381 WNALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQEGL 433
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 8/220 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K LK IHA +L D Y +K+ F + Y+ ++ DQ +PN++ +NT+IR
Sbjct: 24 KHLKHIHAALLRLGLDEDTYLLNKVLRFSF--NFGNTNYSFRILDQTKEPNIFLFNTMIR 81
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----E 151
+D +S I+ + P+ FT PFV+KA AR + +G +H + E
Sbjct: 82 GLVLNDCFQESIEIYHSM-RKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCE 140
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + SLI+ Y CG + A+ VF I K+ SW + ISG+V G +AI+++R +
Sbjct: 141 ADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRL 200
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
++PD ++V VLSAC + DL G W+ +I +NG+
Sbjct: 201 LEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGM 240
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 13/203 (6%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F S L+T C ++ A K+FD IP N +W I Y + ++ +F
Sbjct: 144 FVKISLINLYTKCGF-----IDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFR 198
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI------HGMFEDDLVISNSLIHFYAV 166
+L+ P+ F+L V+ A R R G+ I +GM + + ++ +L+ FY
Sbjct: 199 RLL-EMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRN-VFVATALVDFYGK 256
Query: 167 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
CG++ A VF + +K++VSW+SMI G+ G ++A++L+ +M E +KPD MV V
Sbjct: 257 CGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGV 316
Query: 227 LSACAKKRDLEFGIWVSSHIEKN 249
L +CA+ LE G W S+ I N
Sbjct: 317 LCSCARLGALELGDWASNLINGN 339
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 10/188 (5%)
Query: 61 LFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
+F AL F ++E AR +FD + + N+ +W+++I+ Y+S+ P ++ +F +++
Sbjct: 244 VFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKML- 302
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVG----QAIHG-MFEDDLVISNSLIHFYAVCGDLA 171
N P+ + + V+ + AR +G I+G F D+ V+ +LI YA CG +
Sbjct: 303 NEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMD 362
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A+ VF + KKD V WN+ ISG G + A+ L+ +ME +KPD T V +L AC
Sbjct: 363 RAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACT 422
Query: 232 KKRDLEFG 239
+E G
Sbjct: 423 HAGLVEEG 430
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%)
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
++D + N ++ F G+ ++ + + ++ +N+MI G V F+++IE+Y
Sbjct: 38 LDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYH 97
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
M E + PD T VL ACA+ D E G+ + S + K G + D
Sbjct: 98 SMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEAD 142
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 11/226 (4%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFT-PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
L ++HA ++ + + +KL CA + S Y R++F +P P+ + + +LI++
Sbjct: 28 LHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSIS---YTRQIFLAVPNPDSFLFTSLIKS 84
Query: 98 YSSSDE-PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
S S I S + ++V S P+ +T VIK+ A + G+ +HG F
Sbjct: 85 TSKSHNFSIYSLYFYSRMVL-SNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFG 143
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ + +L+ Y CGDL A VF I ++ +V+WNSMISG+ + GF ++AI L+ M
Sbjct: 144 LDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRM 203
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ V+PD T V VLSACA G WV +I NG+ +++
Sbjct: 204 KETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVL 249
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 14/207 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L+ K + +H +L F D Y + L + C L ARK+FD+I + ++
Sbjct: 124 LSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCG-----DLINARKVFDKIRERSIV 178
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-- 147
WN++I Y + ++ +F ++ + P+ T V+ A A F +G +H
Sbjct: 179 AWNSMISGYEQNGFAKEAIGLFDRM-KETGVEPDSATFVSVLSACAHLGAFSLGCWVHEY 237
Query: 148 ---GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ ++V+ SLI+ Y CG+++ A VF + +++VV+W +MISG+ G+ +A
Sbjct: 238 IVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQA 297
Query: 205 IELYREMEVENVKPDEVTMVVVLSACA 231
+EL+ EM + P+ +T V VLSACA
Sbjct: 298 VELFHEMRRNGLFPNSITFVAVLSACA 324
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 11/189 (5%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H TN Q+K++HAQ+L ++ D + KL + A S + A F+Q+ PN++
Sbjct: 28 HKCTNLNQVKQLHAQILKSNLHVDLFVVPKLIS--AFSLCRQMLLATNAFNQVQYPNVHL 85
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
+NT+IRA+S + +P Q+F F + + Y N FT PF++K V V +++H
Sbjct: 86 YNTMIRAHSHNSQPSQAFATFFAMQRDGHYADN-FTFPFLLKVCTGNVWLPVIESVHAQI 144
Query: 151 E-----DDLVISNSLIHFYAVCGD--LAMAYCVFVMIG-KKDVVSWNSMISGFVEGGFFE 202
E D+ + NSLI Y+ CG ++ A +FV +G ++DVVSWNSMISG +GG +E
Sbjct: 145 EKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYE 204
Query: 203 KAIELYREM 211
+A +++ EM
Sbjct: 205 EARKVFDEM 213
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 6/184 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E AR +FD++P NL +W ++ ++ ++ +F Q+ N T+ +
Sbjct: 263 GDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNG-TVMSI 321
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A +G+ IH +++ ISN+L+ YA CG L +AY VF I KDV
Sbjct: 322 LAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDV 381
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VSWN+M+ G G KA+EL++ M+ E P++VTM+ VL AC ++ GI S
Sbjct: 382 VSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFST 441
Query: 246 IEKN 249
+E++
Sbjct: 442 MERD 445
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 35/179 (19%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E ARK+FD++P+ + +WNT++ Y + +F +F +
Sbjct: 204 EEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDE-------------------- 243
Query: 134 AARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
M E ++V ++++ Y GD+ MA +F + K++VSW ++S
Sbjct: 244 ---------------MPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVS 288
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
GF E G +AI L+ +ME +K D T++ +L+ACA+ L G + + I+ N K
Sbjct: 289 GFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFK 347
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 123/257 (47%), Gaps = 41/257 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T + LK +HA T KLF A+S L YA +MFDQ+P P + +NT
Sbjct: 18 TCMRDLKLLHAHAFRTRLHDHTVVLGKLFRFAAVSPLGDLRYAHRMFDQMPHPTTFFYNT 77
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
LIRA++ S P S + F L+ + P++F+ F++K+ +R +HG
Sbjct: 78 LIRAHAHSTTPSLSSLSF-NLMRQNNVAPDQFSFNFLLKSRSRTTPLTHHNDVHGAVLKF 136
Query: 150 -FEDDLVISNSLIHFYA-----------------------------------VCGDLAMA 173
F L + N LIHFYA G+L +A
Sbjct: 137 GFCRHLHVQNGLIHFYANRGMTLLARRVFEDVLQLGLEVDVVSWSGLLVAHVKAGELEVA 196
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF + ++DVVSW +M++G+ + +A+EL+ EM V PDEVTMV ++SACA
Sbjct: 197 RRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFGEMRRSGVWPDEVTMVSLVSACASL 256
Query: 234 RDLEFGIWVSSHIEKNG 250
D+E G+ V +E+NG
Sbjct: 257 GDMETGMMVHRFVEENG 273
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 11/227 (4%)
Query: 31 HFLTNQKQL---KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN 87
HF N+ +R+ +L D S S L A LE AR++FD++PQ +
Sbjct: 150 HFYANRGMTLLARRVFEDVLQLGLEVDVVSWSGLLV--AHVKAGELEVARRVFDEMPQRD 207
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
+ +W ++ YS + P ++ +F ++ S +P+E T+ ++ A A G +H
Sbjct: 208 VVSWTAMLTGYSQAKRPREALELFGEM-RRSGVWPDEVTMVSLVSACASLGDMETGMMVH 266
Query: 148 GMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
E++ + + N+LI Y CG L A+ VF + +K +++WN+M++ G +
Sbjct: 267 RFVEENGFGWMVALCNALIDMYGKCGCLEEAWRVFHGMTRKSLITWNTMVTVCANYGNAD 326
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+A L+ M V PD VT++ +L A A K ++ GI + ++++
Sbjct: 327 EAFRLFEWMVCSGVVPDSVTLLALLVAYAHKGLVDEGIRLFESMDRD 373
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 125/231 (54%), Gaps = 10/231 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL-STFSSLEYARKMFDQIPQPNLYTWN 92
++ L +H +++ D + A +L A + + YARK+FD + QPN + WN
Sbjct: 28 ASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWN 87
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV---GQAIHGM 149
+IR YSS + P + +F ++ P+ +T+ V+ A+A + G AIH +
Sbjct: 88 CMIRGYSSCEAPRDALAVFREM-RRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHAL 146
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
F D+ + + L+++Y + A VF + ++DVVSW SMIS + G ++K
Sbjct: 147 VRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKV 206
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+++ EM+ E + P++VT++ +LSAC + + ++ G WV + + K GI+ D+
Sbjct: 207 LKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADV 257
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 11/203 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++T C L A + F +P +WNTLI + + E ++ IF +++ +
Sbjct: 266 MYTKCG-----CLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHG-V 319
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYC 175
P+ TL V+ A A+ + R G +H +D D +++NSLI+ YA CGD+A A
Sbjct: 320 TPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAER 379
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + KKDVVSW M+ G+V+G F A L+ EM++ V E+ +V +LSAC++
Sbjct: 380 VFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGA 439
Query: 236 LEFGIWVSSHIEKNGIKMDLTFE 258
L+ G + S+IE+ + DL E
Sbjct: 440 LDKGREIHSYIEEMNVAKDLCLE 462
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 111/218 (50%), Gaps = 8/218 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IHA + F D + S L F S++ A K+F+++ + ++ +W ++I A +
Sbjct: 143 IHALVRRIGFTSDVFVMSGLVNY--YGAFRSVKEASKVFEEMYERDVVSWTSMISACAQC 200
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH---GMF--EDDLVI 156
+ L + PN+ T+ ++ A + G+ ++ G F E D+ I
Sbjct: 201 GH-WDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDI 259
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+LI Y CG L+ A F + + SWN++I GFV+ ++A+ ++ EM + V
Sbjct: 260 RNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGV 319
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
PD +T+V VLSACA+ +L G+ V S+I+ NGI D
Sbjct: 320 TPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCD 357
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 86/162 (53%), Gaps = 7/162 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A ++F + + ++ +W ++ Y + +F +F ++ + +E L ++ A +
Sbjct: 377 AERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKI-AEVVAHEMALVSLLSACS 435
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G+ IH E+ DL + ++L+ YA CG + A +F + K +SWN+
Sbjct: 436 QLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNA 495
Query: 191 MISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACA 231
MI G G+ ++A+EL+ +M E+++ KPD +T+ VL ACA
Sbjct: 496 MIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACA 537
>gi|449480383|ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 561
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 11/189 (5%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H TN Q+K++HAQ+L ++ D + KL + A S + A F+Q+ PN++
Sbjct: 54 HKCTNLNQVKQLHAQILKSNLHVDLFVVPKLIS--AFSLCRQMLLATNAFNQVQYPNVHL 111
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
+NT+IRA+S + +P Q+F F + + Y N FT PF++K V V +++H
Sbjct: 112 YNTMIRAHSHNSQPSQAFATFFAMQRDGHYADN-FTFPFLLKVCTGNVWLPVIESVHAQI 170
Query: 151 E-----DDLVISNSLIHFYAVCGD--LAMAYCVFVMIG-KKDVVSWNSMISGFVEGGFFE 202
E D+ + NSLI Y+ CG ++ A +FV +G ++DVVSWNSMISG +GG +E
Sbjct: 171 EKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYE 230
Query: 203 KAIELYREM 211
+A +++ EM
Sbjct: 231 EARKVFDEM 239
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 35/179 (19%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E ARK+FD++P+ + +WNT++ Y + +F +F +
Sbjct: 230 EEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDE-------------------- 269
Query: 134 AARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
M E ++V ++++ Y GD+ MA +F + K++VSW ++S
Sbjct: 270 ---------------MPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVS 314
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
GF E G +AI L+ +ME +K D T++ +L+ACA+ L G + + I+ N K
Sbjct: 315 GFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFK 373
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 14/186 (7%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E AR +FD++P NL +W ++ ++ ++ +F Q+ N T+ +
Sbjct: 289 GDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNG-TVMSI 347
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKK-- 183
+ A A +G+ IH +++ ISN+L+ YA CG + F + +
Sbjct: 348 LAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGLIDDGIRYFSTMERDYT 407
Query: 184 ---DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+V + M+ G E+AI L R M + P+ + +L AC +E
Sbjct: 408 LVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMP---MAPNAIIWGTLLGACRMHNAVELAR 464
Query: 241 WVSSHI 246
V H+
Sbjct: 465 EVLDHL 470
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 125/231 (54%), Gaps = 10/231 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL-STFSSLEYARKMFDQIPQPNLYTWN 92
++ L +H +++ D + A +L A + + YARK+FD + QPN + WN
Sbjct: 28 ASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWN 87
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV---GQAIHGM 149
+IR YSS + P + +F ++ P+ +T+ V+ A+A + G AIH +
Sbjct: 88 CMIRGYSSCEAPRDALAVFREM-RRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHAL 146
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
F D+ + + L+++Y + A VF + ++DVVSW SMIS + G ++K
Sbjct: 147 VRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKV 206
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+++ EM+ E + P++VT++ +LSAC + + ++ G WV + + K GI+ D+
Sbjct: 207 LKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADV 257
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 11/203 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++T C L A + F +P +WNTLI + + E ++ IF +++ +
Sbjct: 266 MYTKCG-----CLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHG-V 319
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYC 175
P+ TL V+ A A+ + R G +H +D D +++NSLI+ YA CGD+A A
Sbjct: 320 TPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAER 379
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + KKDVVSW M+ G+V+G F A L+ EM++ V E+ +V +LSAC++
Sbjct: 380 VFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGA 439
Query: 236 LEFGIWVSSHIEKNGIKMDLTFE 258
L+ G + S+IE+ + DL E
Sbjct: 440 LDKGREIHSYIEEMNVAKDLCLE 462
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 8/218 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IHA + F D + S L F S+E A K+F+++ + ++ +W ++I A +
Sbjct: 143 IHALVRRIGFTSDVFVMSGLVNY--YGAFRSVEEASKVFEEMYERDVVSWTSMISACAQC 200
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH---GMF--EDDLVI 156
+ L + PN+ T+ ++ A + G+ ++ G F E D+ I
Sbjct: 201 GH-WDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDI 259
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+LI Y CG L+ A F + + SWN++I GFV+ ++A+ ++ EM + V
Sbjct: 260 RNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGV 319
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
PD +T+V VLSACA+ +L G+ V S+I+ NGI D
Sbjct: 320 TPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCD 357
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 86/162 (53%), Gaps = 7/162 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A ++F + + ++ +W ++ Y + +F +F ++ + +E L ++ A +
Sbjct: 377 AERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKI-AEVVAHEMALVSLLSACS 435
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G+ IH E+ DL + ++L+ YA CG + A +F + K +SWN+
Sbjct: 436 QLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNA 495
Query: 191 MISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACA 231
MI G G+ ++A+EL+ +M E+++ KPD +T+ VL ACA
Sbjct: 496 MIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACA 537
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 118/219 (53%), Gaps = 8/219 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K L ++HA ++ F + + KL CA+S + YA +FD+I + + WNT+IR
Sbjct: 69 KDLNQLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDRIENADGFLWNTMIR 128
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMF 150
+ + + + +F + +++ N FT F++K + +G+ +H G+
Sbjct: 129 GFGRNRKLLMAFEFYKRMLEKGIAADN-FTFSFLLKMTGQLGSIMLGKQLHVNILKLGL- 186
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ + + N+LIH Y D+ +A +F + K D+V+WN++I V G + +A++L+ +
Sbjct: 187 DSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFVQ 246
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
M V+PDE T+VV +SAC+ L+ G WV SH+ N
Sbjct: 247 MLQSGVEPDEATLVVTISACSALGALDCGRWVHSHVNSN 285
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 7/170 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FD++P+ +L WN +I + S ++ +F+Q++ S P+E TL I A +
Sbjct: 209 ARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFVQML-QSGVEPDEATLVVTISACS 267
Query: 136 RPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ +H + + + NSLI YA CG + A +F + K++V+WN+
Sbjct: 268 ALGALDCGRWVHSHVNSNDRGKTIAVFNSLIDMYAKCGAVEYAREMFNAVSGKNIVTWNT 327
Query: 191 MISGFVEGGFFEKAIELYREMEVENVK-PDEVTMVVVLSACAKKRDLEFG 239
MI G G E A+ L+ M E V+ PD VT + VL AC +E G
Sbjct: 328 MIMGLATHGDAEDALTLFSNMLAERVETPDGVTFLAVLCACNYGGKVEEG 377
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++EYAR+MF+ + N+ TWNT+I ++ + + +F ++ P+ T V
Sbjct: 305 GAVEYAREMFNAVSGKNIVTWNTMIMGLATHGDAEDALTLFSNMLAERVETPDGVTFLAV 364
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + G+ + I +L H+ S
Sbjct: 365 LCACNYGGKVEEGRRYFDLMTKHFNIQPTLKHY-------------------------GS 399
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
M+ GF E+A +L + M +E + V +L+AC ++E G VSSH+
Sbjct: 400 MVDILGRAGFVEEAYQLIKSMPME---CNAVIWRTLLAACQMHGNVELGERVSSHV 452
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQA--IHGMFEDDLVISNSLIHFYAVC--GDLAM 172
N YF E F+ K + A I F+ +L + LI F AV GD+
Sbjct: 48 NGGYFAKEQKFMFLFKQCSTLKDLNQLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNY 107
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
A VF I D WN+MI GF A E Y+ M + + D T +L +
Sbjct: 108 AVVVFDRIENADGFLWNTMIRGFGRNRKLLMAFEFYKRMLEKGIAADNFTFSFLLKMTGQ 167
Query: 233 KRDLEFGIWVSSHIEKNGI 251
+ G + +I K G+
Sbjct: 168 LGSIMLGKQLHVNILKLGL 186
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 15/232 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYT 90
N + + ++H+Q+ T D + A+KL + CA SL+ ARK+FD+ P PN++
Sbjct: 15 NNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCA-----SLQAARKVFDETPHPNVHL 69
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
WN+ +R+Y + ++ +F ++ + P+ FT+P +KA A +G+ IHG
Sbjct: 70 WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFA 129
Query: 151 E------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ D+ + ++L+ Y+ CG + A VF + D V W SM++G+ + E+A
Sbjct: 130 KKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEA 189
Query: 205 IELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ L+ +M ++ V D VT+V V+SACA+ +++ G V + + DL
Sbjct: 190 LALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDL 241
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALS--TFSSLEYARKMFDQIPQPNLYTWNTLIR 96
LK+ HA++ + +D S++ T A+ +F+ ++ A +F+ IP P + WN +IR
Sbjct: 736 LKKTHAKIFAYGLQYD----SRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIR 791
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----E 151
+++ + S ++ +++ P++F PF +K+ A + G+ IH
Sbjct: 792 GFATDGRFLSSLELYSKMM-EKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCS 850
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+DL + +L+ YA CGD+ A VF + +D+VSW SMISG+ G+ + + + M
Sbjct: 851 NDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLM 910
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V P+ V+++ VL AC L G W S++ + G + D+
Sbjct: 911 RSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDI 954
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 108/208 (51%), Gaps = 9/208 (4%)
Query: 58 ASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
S +F AL S + A K+F++ +P+ W +++ Y +++P ++ +F Q
Sbjct: 136 GSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQ 195
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG 168
+V + TL V+ A A+ + + G +HG+ F+ DL + NSL++ YA G
Sbjct: 196 MVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTG 255
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
+A +F + +KDV+SW++MI+ + +A+ L+ EM + +P+ VT+V L
Sbjct: 256 CEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQ 315
Query: 229 ACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
ACA R+LE G + G ++D +
Sbjct: 316 ACAVSRNLEEGKKIHKIAVWKGFELDFS 343
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 110/216 (50%), Gaps = 16/216 (7%)
Query: 33 LTNQKQLKRIHAQML----STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNL 88
L++ ++ K IH ++ S D F D + ++ C +E AR +FD++ +L
Sbjct: 831 LSDLQRGKVIHQHLVCCGCSNDLFVDA-ALVDMYAKCG-----DIEAARLVFDKMAVRDL 884
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+W ++I Y+ + ++ + F L+ +S PN ++ V+ A R G+ H
Sbjct: 885 VSWTSMISGYAHNGYNSET-LGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHS 943
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
FE D++++ +++ Y+ CG L +A C+F KD+V W++MI+ + G K
Sbjct: 944 YVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRK 1003
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
AI+L+ +M V+P VT VLSAC+ LE G
Sbjct: 1004 AIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEG 1039
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 114/223 (51%), Gaps = 8/223 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L N K +H ++ +F D + L A + + A +F ++P+ ++ +W+
Sbjct: 219 LLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKI--AANLFSKMPEKDVISWS 276
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
T+I Y++++ ++ +F +++ + PN T+ ++A A G+ IH +
Sbjct: 277 TMIACYANNEAANEALNLFHEMI-EKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVW 335
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
FE D +S +LI Y C A +F + KKDVVSW +++SG+ + G K++ +
Sbjct: 336 KGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGV 395
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+R M + ++PD V +V +L+A ++ + + + ++ ++G
Sbjct: 396 FRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSG 438
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 117/237 (49%), Gaps = 12/237 (5%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF 70
I + P ++TV + Q N ++ K+IH + F D +S S +
Sbjct: 299 IEKRFEPNSVTVVSALQACA-VSRNLEEGKKIHKIAVWKGFELD-FSVSTALIDMYMKC- 355
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S + A +F ++P+ ++ +W L+ Y+ + +S +F ++ + P+ + +
Sbjct: 356 SCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQ-PDAVAVVKI 414
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A++ F+ +HG F ++ + SLI Y+ CG L A +F + +DV
Sbjct: 415 LAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDV 474
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVEN--VKPDEVTMVVVLSACAKKRDLEFGI 240
V W+SMI+ + G +A+E++ +M V+N V+P+ VT + +LSAC+ +E G+
Sbjct: 475 VIWSSMIAAYGIHGRGGEALEIFDQM-VKNSTVRPNNVTFLSILSACSHAGLVEEGL 530
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 37 KQLKRIHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q +H ++ + F F S +L++ C SL A K+F + ++ W++
Sbjct: 425 QQALCLHGYVVRSGFNSNVFVGASLIELYSKCG-----SLGDAVKLFKGMIVRDVVIWSS 479
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
+I AY ++ IF Q+V NS PN T ++ A + G+ E+
Sbjct: 480 MIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHA----------GLVEEG 529
Query: 154 LVISNSLIHFY 164
L I + ++H Y
Sbjct: 530 LKIFDRMVHDY 540
>gi|145340387|ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520
gi|110738662|dbj|BAF01256.1| hypothetical protein [Arabidopsis thaliana]
gi|332658657|gb|AEE84057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 617
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 12/226 (5%)
Query: 37 KQLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+ +KRIHA L FD Y + L + C L YARK+FD +P+ N TW
Sbjct: 99 RLIKRIHAMALKC---FDDQVIYFGNNLISSCV--RLGDLVYARKVFDSMPEKNTVTWTA 153
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG----M 149
+I Y ++F +F V + F NE ++ +R +F +G+ +HG +
Sbjct: 154 MIDGYLKYGLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKV 213
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+L++ +SL++FYA CG+L A F M+ +KDV+SW ++IS G KAI ++
Sbjct: 214 GVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFI 273
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M P+E T+ +L AC++++ L FG V S + K IK D+
Sbjct: 274 GMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDV 319
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 101/188 (53%), Gaps = 6/188 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L A + FD + + ++ +W +I A S I++ +F+ ++ N + PNEFT+ ++K
Sbjct: 234 LTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGML-NHWFLPNEFTVCSILK 292
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + R G+ +H M + D+ + SL+ YA CG+++ VF + ++ V+
Sbjct: 293 ACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVT 352
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W S+I+ GF E+AI L+R M+ ++ + +T+V +L AC L G + + I
Sbjct: 353 WTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQII 412
Query: 248 KNGIKMDL 255
KN I+ ++
Sbjct: 413 KNSIEKNV 420
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 14/200 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +HAQ++ + Y S L + C S A + Q+P ++ +W +I
Sbjct: 405 KELHAQIIKNSIEKNVYIGSTLVWLYCKCGES-----RDAFNVLQQLPSRDVVSWTAMIS 459
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
SS ++ + FL+ + PN FT +KA A +G++IH + + + +
Sbjct: 460 GCSSLGHESEA-LDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHAL 518
Query: 157 SN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
SN +LIH YA CG ++ A+ VF + +K++VSW +MI G+ GF +A++L M
Sbjct: 519 SNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRM 578
Query: 212 EVENVKPDEVTMVVVLSACA 231
E E + D+ +LS C
Sbjct: 579 EAEGFEVDDYIFATILSTCG 598
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 16/219 (7%)
Query: 40 KRIHA----QMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+++H+ +M+ TD F S ++ C + RK+FD + N TW ++I
Sbjct: 304 RQVHSLVVKRMIKTDVFVGT-SLMDMYAKCG-----EISDCRKVFDGMSNRNTVTWTSII 357
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----- 150
A++ ++ +F +++ N T+ +++A +G+ +H
Sbjct: 358 AAHAREGFGEEAISLF-RIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSI 416
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E ++ I ++L+ Y CG+ A+ V + +DVVSW +MISG G +A++ +E
Sbjct: 417 EKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKE 476
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
M E V+P+ T L ACA L G + S +KN
Sbjct: 477 MIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKN 515
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 128/235 (54%), Gaps = 11/235 (4%)
Query: 26 HQRHPHFL----TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMF 80
+Q HP L T+ +LK+I A + T+ D +KL C L+ T S +++A +F
Sbjct: 28 NQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLF 87
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
DQI ++ +N + R Y+ S+ P +F +F +L+ S P+++T ++KA A
Sbjct: 88 DQILDKDIILFNIMARGYARSNSPYLAFSLFGELLC-SGLLPDDYTFSSLLKACASSKAL 146
Query: 141 RVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
R G +H ++ I +LI+ YA C D+ A VF + + +VS+N++I+G+
Sbjct: 147 REGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGY 206
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+A+ L+RE++ N++P +VTM+ V+ +CA L+ G W+ +++K G
Sbjct: 207 ARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKG 261
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+ + AR +FD++ QP + ++N +I Y+ S +P ++ +F +L S P + T+ V
Sbjct: 179 NDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFREL-QASNIEPTDVTMLSV 237
Query: 131 IKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I + A +G+ IH F+ + ++ +LI +A CG L A +F + +D
Sbjct: 238 IMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDT 297
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+W++MI F G KAI ++ EM+ E V+PDE+T + +L AC+ +E G
Sbjct: 298 QAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQG 351
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 37/237 (15%)
Query: 58 ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117
AS+L + A+S++ ++++ ++F QIP P + WN++IR +S P S +F++++
Sbjct: 47 ASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKML-R 105
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHF--------- 163
P+ T PF+ KA AR + R+ A+H D I+NSLIH
Sbjct: 106 FGVCPDHLTYPFIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGS 165
Query: 164 ----------------------YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
YA CGDL A VF + +DVVSW+SMI G V+GG +
Sbjct: 166 ARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEY 225
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
A+ ++ M V K +EVTMV VL ACA LE G + ++ N ++ L
Sbjct: 226 GVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLR 282
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ AR++F+ +P ++ +W+++I E + IF ++ P NE T+ V
Sbjct: 192 GDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPK-ANEVTMVSV 250
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVF--VMIGKK 183
+ A A G+ +H D+ LV+ SL+ YA CG + A VF V + +
Sbjct: 251 LCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQT 310
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
DV+ WN++I G G +++EL++EM+V + PDE+T + + SACA
Sbjct: 311 DVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFSACA 358
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 127/231 (54%), Gaps = 22/231 (9%)
Query: 37 KQLKRIHAQMLSTDFF-FDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
++ ++IHA+ + T F+ Y ++ +L++ C S+ +K+FD+ P +L +W
Sbjct: 127 REGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCG-----SIHDVQKVFDECPHRDLVSWT 181
Query: 93 TLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TLI+A++ + +++FM L + + TL V+ A + +GQ +H
Sbjct: 182 TLIQAFTKAGLYSRAVEAFMEMCDLRLRA----DGRTLVVVLSACSNLGDLNLGQKVHSY 237
Query: 150 F------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
+ D+ + N+L+ Y C DL AY VF + K+VV+WN+MISG G + +
Sbjct: 238 IRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYRE 297
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
A++ +R M+ + VKPDEVT+V VL++CA LE G WV +++ +N I D
Sbjct: 298 ALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILAD 348
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 107/220 (48%), Gaps = 11/220 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKL-FTPCALSTFSSLEYARKMF---DQIPQPNLYTWNT 93
LK+IH + T P KL F + S+ L Y R + Q L N
Sbjct: 21 HLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLTHSHDAQFCLSLCNA 80
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------ 147
+IR+ S + + S M FL + P+ FT+P V+KA A R GQ IH
Sbjct: 81 IIRSISRNSINL-SPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIKT 139
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
GM ++ +SN+L+ Y+VCG + VF +D+VSW ++I F + G + +A+E
Sbjct: 140 GMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEA 199
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+ EM ++ D T+VVVLSAC+ DL G V S+I
Sbjct: 200 FMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIR 239
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 6/164 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L A K+FD++P N+ TWN +I + ++ F +++ + P+E TL V+
Sbjct: 264 LNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTF-RMMQDKGVKPDEVTLVGVLN 322
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ A +G+ +H D + N+L+ YA CG + A+ VF + ++DV S
Sbjct: 323 SCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYS 382
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ +MI G G A +++ EM ++P+EVT + +L AC+
Sbjct: 383 YTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 426
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 8/225 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
++ L +I+A++L T + + +KL S + ARK+FD+ P P+++ WN +
Sbjct: 87 HKTHLNQIYAKLLVTGLQYGGFLIAKLVNKA--SNIGEVSCARKLFDKFPDPDVFLWNAI 144
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
+R YS + ++ ++ + P+ F+ P V+KA + +G+ +HG
Sbjct: 145 VRCYSRHGFFGHAIEMYARMQV-ACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHG 203
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
FE D+ + N L+ YA CG++ A VF + + +VSW S+ISG+ + G +A+ ++
Sbjct: 204 FESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFS 263
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
EM NV+PD + +V VL A DLE G + + K G++ +
Sbjct: 264 EMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECE 308
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 12/223 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+R+H Q+ F D + + L + + A +F ++ + +W ++I Y+
Sbjct: 193 RRVHGQIFRHGFESDVFVQNGLVA--LYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYA 250
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-------ED 152
+ +PI++ IF ++ + P+ L V++A G++IHG E
Sbjct: 251 QNGQPIEALRIFSEM-RKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEF 309
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
DL+IS L YA CG + +A F + ++ WN+MISG+V+ G+ E+AIEL+R M+
Sbjct: 310 DLLIS--LTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMK 367
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+N++PD +T+ ++ACA+ LE W+ +I + + D+
Sbjct: 368 SKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDV 410
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 11/188 (5%)
Query: 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
S + L+ C + AR F+Q+ P+L WN +I Y + ++ +F +L+
Sbjct: 314 SLTSLYAKCG-----HVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELF-RLMK 367
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLA 171
+ P+ T+ I A A+ + + + F +D++++ SLI YA CG +
Sbjct: 368 SKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVD 427
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MA VF I KDVV W++M+ G+ G ++I L+ M V P++VT V +L+AC
Sbjct: 428 MARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACK 487
Query: 232 KKRDLEFG 239
+E G
Sbjct: 488 NSGLVEEG 495
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G+++ A +F DV WN+++ + GFF AIE+Y M+V V PD + VL
Sbjct: 121 GEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVL 180
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMDL 255
AC+ LE G V I ++G + D+
Sbjct: 181 KACSALPALEMGRRVHGQIFRHGFESDV 208
>gi|297733980|emb|CBI15227.3| unnamed protein product [Vitis vinifera]
Length = 491
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 12/225 (5%)
Query: 26 HQRH--PHFLTN---QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF 80
H +H LTN K LK++HA + T DP A KL A+S +L+YAR++F
Sbjct: 3 HTQHLCSSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLF 62
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA----- 135
P P+++ NTLIR + SD P S + F+++ + F+ F++KAAA
Sbjct: 63 LHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSL 122
Query: 136 -RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
+Q +HG+ + L + +L+ Y+ CG +A A VF + + +VV+WN++++
Sbjct: 123 ESGIQLHCQAIVHGL-DTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTA 181
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G ++AI+L+ EME ++PD + + +L AC+ +E G
Sbjct: 182 CFRCGDVKEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKG 226
>gi|297846398|ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336922|gb|EFH67339.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 562
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 9/211 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q+K++ + L+ F + S+L CA+S F L +A K+F IP+P WN +IR
Sbjct: 18 QIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVKIFRHIPKPLTNDWNAIIRG 77
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFP----NEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
++ S P +F + ++ S + T F +KA AR + IH
Sbjct: 78 FAGSSHPSLAFSWYRSMLQRSSSSALCRVDALTCSFTLKACARALCSSAMVQIHCQISRR 137
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F D ++ +L+ Y+ GDL A +F + +DV SWN++I+G V G +A+ELY
Sbjct: 138 GFSADALLCTTLLDAYSKNGDLISALKLFDEMSVRDVASWNALIAGLVAGNRASEALELY 197
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ME+E ++ EVT+V L AC+ D++ G
Sbjct: 198 KRMEMEGIRRSEVTVVAALGACSHLGDVKEG 228
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 10/219 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IH Q+ F D + L A S L A K+FD++ ++ +WN LI +
Sbjct: 129 QIHCQISRRGFSADALLCTTLLD--AYSKNGDLISALKLFDEMSVRDVASWNALIAGLVA 186
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-HGMFEDD-----L 154
+ ++ ++ ++ +E T+ + A + + G+ I HG +D+ +
Sbjct: 187 GNRASEALELYKRMEMEGIR-RSEVTVVAALGACSHLGDVKEGEKILHGYIKDEKLDHNV 245
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVM-IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
++SN++I Y+ CG + A+ VF GKK VV+WN+MI+GF G +A+E++ ++E
Sbjct: 246 IVSNAVIDMYSKCGFVDKAFQVFEQFTGKKSVVTWNTMITGFSVHGEAHRALEIFEKLEH 305
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+KPD+V+ + L+AC +E+GI + +++ NG++
Sbjct: 306 NGIKPDDVSYLAALTACRHTGLVEYGISIFNNMACNGVE 344
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 137/287 (47%), Gaps = 43/287 (14%)
Query: 6 TPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL--FT 63
TP I++P P T + +N KQLK++H +++ +D KL +
Sbjct: 7 TPDINVPYLETPRTRFGSEEALVLLKKCSNFKQLKQVHGKIIRYGLTYDQLLVRKLIQLS 66
Query: 64 PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
P ++ ++YA +FDQ+ P+++TWN +IRAY+ P +F++F ++Y + P+
Sbjct: 67 P----SYGKMKYATLVFDQLNAPDVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQG-FAPD 121
Query: 124 EFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFY-------------- 164
+FT P VI A VG+ H + F DL + N++++ Y
Sbjct: 122 KFTYPCVINACMAYNALDVGRVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGWNVFD 181
Query: 165 -----------------AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
CG L A +F + K+VVSW ++I G+V+ +A +L
Sbjct: 182 KMCVRNVFAWTTVIAGFVACGKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDL 241
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ M+ +NV+P+E T+V ++ AC + L+ G V KNG +++
Sbjct: 242 FERMQADNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELE 288
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ AR++F+Q+P N+ +W +I Y +PI++F +F ++ ++ PNE+TL +
Sbjct: 202 GKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERMQADNVR-PNEYTLVSL 260
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
++A ++G+ +H FE + + +LI Y+ CG+L A VF M+ + +
Sbjct: 261 VRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGNLDDARTVFDMMQMRTL 320
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+WN+MI+ G+ ++A+ ++ EME N PD +T V VLSAC DLE
Sbjct: 321 ATWNTMITSLGVHGYRDEALSIFEEMEKANEVPDAITFVGVLSACVYMNDLELA 374
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+R+H L F +P+ + L S +L+ AR +FD + L TWNT+I +
Sbjct: 274 RRVHDFALKNGFELEPFLGTALID--MYSKCGNLDDARTVFDMMQMRTLATWNTMITSLG 331
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS 159
++ IF ++ + P+ T V+ A + Q + D I+
Sbjct: 332 VHGYRDEALSIFEEM-EKANEVPDAITFVGVLSACVYMNDLELAQKYFNLMTDHYGITPI 390
Query: 160 LIHF 163
L H+
Sbjct: 391 LEHY 394
>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
Length = 1009
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 121/220 (55%), Gaps = 6/220 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+ ++IHA+++ + S SLE ARK+ D+IP + + LIR+
Sbjct: 98 EFRQIHARVVKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEIPNRTVPAYAALIRS 157
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----ED 152
Y S++ + F F +VY P+++ +P ++KA + + R+G+ +HG E
Sbjct: 158 YCRSEQWDELFSXFRLMVYEG-MLPDKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVES 216
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N+LIHFY+ CGDL + VF + ++DVVSW ++IS ++E G ++A ++ M+
Sbjct: 217 DVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEGLXDEAKHIFHLMQ 276
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
++ VKPD ++ +LS A+ +++ + + + G++
Sbjct: 277 LDGVKPDLISWSALLSGFARNGEIDLALETLEEMPERGLQ 316
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 113/238 (47%), Gaps = 12/238 (5%)
Query: 8 VISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL 67
V+++ PNP T+T G L Q K IH L F + + +S L
Sbjct: 528 VLNLSMRPNPITIT---GALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVD--MY 582
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ ++ A K+F +I N +WN L+ Y ++ +P ++ +FL+++ P+ T
Sbjct: 583 AKCHDMDSANKVFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEML-GEGLQPSSITF 641
Query: 128 PFVIKAAARPVQFRVGQAIHGMFE----DDL--VISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ A R G+ +HG D+L I ++LI YA CG + A VF
Sbjct: 642 MILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSILDAKSVFDSEV 701
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+KDV WN+MIS F G A ++ +ME+ + PD +T V +LSACA+ +E G
Sbjct: 702 EKDVPLWNAMISAFSVHGMARNAFAVFXQMELLGIXPDHITFVSLLSACARDGLVEEG 759
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 16/184 (8%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL-----------VYNSPY 120
+ E +M +PN+ ++N LI + S ++ +F + V N
Sbjct: 474 AXELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSM 533
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
PN T+ + A A + G+ IHG FE ++ +S++L+ YA C D+ A
Sbjct: 534 RPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANK 593
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF I ++ VSWN++++G++ E+A++L+ EM E ++P +T +++ AC
Sbjct: 594 VFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAA 653
Query: 236 LEFG 239
+ FG
Sbjct: 654 IRFG 657
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 6/166 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
+LE +M ++ QP + +WN +I + + +F ++++ P PN T+ ++
Sbjct: 303 ALETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLW-YPEDPNIITIASIL 361
Query: 132 KAAARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A R+G+AIH + ++ N S+I Y+ CG A VF K+
Sbjct: 362 PACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTA 421
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
WN MI+ +V G E A+ L R M+ + KPD +T +LS A+
Sbjct: 422 MWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHAR 467
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 124/251 (49%), Gaps = 42/251 (16%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+LK+IH Q++ F + KL + T +L A K+F++I P+ WN +IR
Sbjct: 48 KKLKQIHTQIIVNGFSQKNFLLVKLLS--FYITSGNLLNAHKVFERIENPSTTVWNQMIR 105
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-------- 148
+S S+ P + ++ ++V + PNEFT F+I AR R G+ +HG
Sbjct: 106 GHSQSETPHKLVELYNRMV-EAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYC 164
Query: 149 -------------------------------MFEDDLVISNSLIHFYAVCGDLAMAYCVF 177
+ + ++V NSL+ Y CGD+ A +F
Sbjct: 165 TNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIF 224
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ +++VVSW +MI+G + G ++A+ L+ EM VK D+V +V LSACA+ DL+
Sbjct: 225 DEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLK 284
Query: 238 FGIWVSSHIEK 248
G W+ S+I++
Sbjct: 285 LGTWIHSYIDE 295
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 93/173 (53%), Gaps = 13/173 (7%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++ AR++FD++P+ N+ +W T+I + Q+ +F ++ + ++ L
Sbjct: 215 GDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEM-RRAGVKLDQVALVAA 273
Query: 131 IKAAARPVQFRVGQAIHGMFEDDL---------VISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ A A ++G IH ++ L ++NSLIH YA CG + AY VF+ +
Sbjct: 274 LSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQ 333
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREME---VENVKPDEVTMVVVLSACA 231
++ +SW SMI+GF + G E+A+ +++ M+ + +PD +T + VL AC+
Sbjct: 334 QRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACS 386
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%)
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
L+ FY G+L A+ VF I WN MI G + K +ELY M +P+
Sbjct: 72 LLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPN 131
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
E T ++ CA+ L G V + NG
Sbjct: 132 EFTYSFLIGGCARSXLLREGEQVHGRVVANG 162
>gi|255543272|ref|XP_002512699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548660|gb|EEF50151.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 686
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 10/225 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IHAQ L F DPY S L S + AR +FD P N +W L R Y
Sbjct: 117 KQIHAQALKFGFSSDPYVISSLID--FYGHLDSTDAARSLFDNSPSKNSVSWTVLARLYL 174
Query: 100 SSDEPIQSFMIFLQLV-YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
++P +F Q++ +NS + P L ++A G+ +HG E D
Sbjct: 175 MQNKPDVVLSLFYQMLDFNSLFDP--VALATALRACGMLRSMHHGKILHGFAKKCRLEFD 232
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+++SNSL+ Y C + A F + KD++SW +I+G+V+ G F +A++L+R+M +
Sbjct: 233 ILVSNSLLKMYVDCHCIEDARATFHQMPTKDIISWTEIINGYVKIGEFNEALKLFRQMNI 292
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
++PD +++ +L ACA+ + G + +++ +NGI+++L +
Sbjct: 293 AGIRPDSLSLSTILPACARPAAHKLGREIHAYLLRNGIELNLMLQ 337
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
K++ C +E AR F Q+P ++ +W +I Y E ++ +F Q+ +
Sbjct: 241 KMYVDC-----HCIEDARATFHQMPTKDIISWTEIINGYVKIGEFNEALKLFRQMNI-AG 294
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAY 174
P+ +L ++ A ARP ++G+ IH E +L++ N+LI Y G + A
Sbjct: 295 IRPDSLSLSTILPACARPAAHKLGREIHAYLLRNGIELNLMLQNALIDMYVKSGFMESAS 354
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKK 233
+FV + +KDV+SW MI GF G E +EL+R +E + +++ D+ VL C
Sbjct: 355 LIFVRMKEKDVISWTVMILGFSLHGQGELGVELFRRLEKDPSIEIDQYIYAAVLRCCTTA 414
Query: 234 RDLEFG 239
+E G
Sbjct: 415 CMVEEG 420
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 6/205 (2%)
Query: 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
+S + TP L + + + D+IP + + WN LI ++ ++ +P + I+L ++
Sbjct: 30 HSRRRSLTPLRLLKSAHSAFPLQPLDEIPLSDTFAWNNLIHSHLTNRDPFSALSIYLHML 89
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDL 170
P+ T P V+ A+ +G+ IH F D + +SLI FY
Sbjct: 90 LRGA-LPDRRTFPRVLNASRLSTNLFLGKQIHAQALKFGFSSDPYVISSLIDFYGHLDST 148
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
A +F K+ VSW + ++ + + L+ +M N D V + L AC
Sbjct: 149 DAARSLFDNSPSKNSVSWTVLARLYLMQNKPDVVLSLFYQMLDFNSLFDPVALATALRAC 208
Query: 231 AKKRDLEFGIWVSSHIEKNGIKMDL 255
R + G + +K ++ D+
Sbjct: 209 GMLRSMHHGKILHGFAKKCRLEFDI 233
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 118/217 (54%), Gaps = 8/217 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH Q+ F F+ + L L F +++FD++PQ +L WN LI AY+
Sbjct: 99 EQIHGQIFKLGFEFEVIIQTALLNLYGL--FDEDCGLQQIFDEMPQRDLVMWNALIAAYA 156
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDL 154
+ P + + +V S PN T ++ + R G+A+HG + E D+
Sbjct: 157 HGNCPYKVREVSYDMV-RSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDV 215
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+LI Y+ CG + A VF ++ ++VVSW S+I+G+ + +A+ +++ME E
Sbjct: 216 FVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAE 275
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
N++PDE+T++ V+ C+K R E G W+S ++ K G+
Sbjct: 276 NIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGL 312
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 9/217 (4%)
Query: 46 MLSTDFFFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEP 104
M++ +P ASKL A T + AR++ DQI + YTWNT+IR Y ++P
Sbjct: 1 MITNGHLHNPTLASKLVVSFASITLPGTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDP 60
Query: 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA-RPVQFRVGQAIHGM-----FEDDLVISN 158
++ +++ V + +TL FVIKA RPV G+ IHG FE +++I
Sbjct: 61 EEAILVY-NHVRKKGLKVDTYTLVFVIKACGLRPVILE-GEQIHGQIFKLGFEFEVIIQT 118
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
+L++ Y + + +F + ++D+V WN++I+ + G K E+ +M NVKP
Sbjct: 119 ALLNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKP 178
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ VT V +LS C+ R L G V ++ KN I+ D+
Sbjct: 179 NGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDV 215
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 9/219 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ K +H + FD + + L S S+ A ++F +P N+ +W +LI
Sbjct: 197 REGKAVHGYVTKNLIEFDVFVHNALIV--VYSKCGSIRDAVQVFQLMPMRNVVSWTSLIN 254
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMF 150
YS ++ P ++ F Q+ + P+E T+ V+ ++ F +G+ I G+
Sbjct: 255 GYSDNNCPNEALGFFKQMEAEN-IRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLL 313
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
++ I+N+L+ +A CG++ A +F + +K +VSW MI G G A+ + +
Sbjct: 314 KESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQ 373
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
M+ E KPD + + +LSAC+ ++ G S +E +
Sbjct: 374 MQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEAD 412
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G ++A + I D +WN++I G++EG E+AI +Y + + +K D T+V V+
Sbjct: 27 GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILVYNHVRKKGLKVDTYTLVFVI 86
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
AC + + G + I K G + ++ +
Sbjct: 87 KACGLRPVILEGEQIHGQIFKLGFEFEVIIQ 117
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 128/265 (48%), Gaps = 51/265 (19%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSS------------------------ 72
+++HAQ+L DP+ + L ++ C TF+
Sbjct: 80 RQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKA 139
Query: 73 --LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTLP 128
+ ARK+FDQ+P+ N+ +W+ +I Y S E + +F LQ + S PNEFT+
Sbjct: 140 GMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMS 199
Query: 129 FVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIG-K 182
V+ A AR + G+ +H + D+V+ SLI YA CG + A C+F +G +
Sbjct: 200 SVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPE 259
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA----------- 231
KDV++W++MI+ F G E+ +EL+ M + V+P+ VT V VL AC
Sbjct: 260 KDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEY 319
Query: 232 -KKRDLEFGIWVSSHIEKNGIKMDL 255
K+ E+G VS I+ G +DL
Sbjct: 320 FKRMMNEYG--VSPMIQHYGCMVDL 342
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 43/218 (19%)
Query: 82 QIPQPNL--YTWNTLIRAYSSSDEPIQSF----MIFLQLVYNSPYFPNEFTLPFVIKAAA 135
+ PN+ + WN LIRA + S +F ++L++ ++ P+ T PF++++
Sbjct: 16 HLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHA-VLPDLHTFPFLLQSIN 74
Query: 136 RPVQFR---------------------------------VGQAIHGMFEDDLVISNSLIH 162
P + R QA + + DL N++IH
Sbjct: 75 TPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIH 134
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE---MEVENVKPD 219
A G + +A +F + +K+V+SW+ MI G+V G ++ A+ L+R +E ++P+
Sbjct: 135 ANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPN 194
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
E TM VLSACA+ L+ G WV ++I+K G+K+D+
Sbjct: 195 EFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVL 232
>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Cucumis sativus]
Length = 595
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 11/227 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++HA+++ + D + SKL + S S+ A +F +IP+ N+++WN L+ +Y+
Sbjct: 23 KQLHARLVLSSVVPDNFLGSKLIS--FYSKSGSIRDAYNVFGKIPRKNIFSWNALLISYT 80
Query: 100 SSDEPIQSFMIFLQLVYN--SPYFPNEFTLPFVIKAAARPV-QFRVGQAIHGM-----FE 151
+ +F LV + + P+ FT+ +KA A + + +H E
Sbjct: 81 LHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLE 140
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ + N+LI FY+ C +L +A +F + ++D+VSWN+M++G+ +GG +EK EL+R M
Sbjct: 141 YDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVM 200
Query: 212 -EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
VKP+ +T V VL ACA+ DL FGI V + ++ IKMD++
Sbjct: 201 LSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSL 247
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 38/263 (14%)
Query: 1 METLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASK 60
++ S+ V S P TV + +N K +H+ +L +D + +
Sbjct: 89 LKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNA 148
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L T S L AR MFD++P+ ++ +WN ++ YS + +F ++ +
Sbjct: 149 LIT--FYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEV 206
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYC 175
PN T V++A A+ G +H + D+ + N++I YA CG L A
Sbjct: 207 KPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARE 266
Query: 176 VFVMIGKKDVVS-------------------------------WNSMISGFVEGGFFEKA 204
+F + +KD ++ WN++ISG V+ E A
Sbjct: 267 LFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGA 326
Query: 205 IELYREMEVENVKPDEVTMVVVL 227
++++R M+ +P+ VT+ +L
Sbjct: 327 VDIFRAMQSHGCRPNTVTLASIL 349
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F + +P L TWN +I ++ + IF + + + PN TL ++ +
Sbjct: 295 AMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIF-RAMQSHGCRPNTVTLASILPVFS 353
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G+ IHG ++ ++ ++ ++I YA CG L A VF I + +++W S
Sbjct: 354 HFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTS 413
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+IS + G A+ L+ EM ++PD+VT VL+ACA +L+
Sbjct: 414 IISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELD 460
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 123/256 (48%), Gaps = 43/256 (16%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
+ + K IHA T KLF A+S F L YA MFDQ+PQP + +NTL
Sbjct: 19 SMRNFKLIHAHAFRTCLHQHAVVLGKLFRFAAVSPFGDLSYAHNMFDQMPQPTTFFYNTL 78
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
IRA+S S P S + F ++ NS P+EF+ F++K+ R + IHG
Sbjct: 79 IRAHSHSTTPSFSSLFFNRMRRNS-IAPDEFSFTFLLKS--RSFTMPLVHDIHGAVFKFG 135
Query: 150 FEDDLVISNSLIHFYAV-----------------------------------CGDLAMAY 174
F L + N+LIH YAV G+L +A
Sbjct: 136 FCRHLHVQNALIHLYAVGGVTISARKVFEDAVRVGLDVDIVSWSGLLVAHAKAGELDVAR 195
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
VF + ++DVVSW M+S + + + ++L++EM + V PDEVT++ V+SACA+
Sbjct: 196 KVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRLAGVWPDEVTVLSVISACAELG 255
Query: 235 DLEFGIWVSSHIEKNG 250
D E G V +E+NG
Sbjct: 256 DAEMGRMVHKFVEENG 271
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 99/184 (53%), Gaps = 6/184 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ ARK+FD +P+ ++ +W ++ AYS + P ++ +F Q + + +P+E T+ V
Sbjct: 189 GELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLF-QEMRLAGVWPDEVTVLSV 247
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I A A +G+ +H E++ + + NSLI Y CG L A+ VF +K +
Sbjct: 248 ISACAELGDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLEEAWQVFDRTKRKSL 307
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
++WN+M+ G+ E A L+ M V PD VT++ +L A A K ++ GI +
Sbjct: 308 ITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYAHKGFVDEGIRLFES 367
Query: 246 IEKN 249
++++
Sbjct: 368 MQRD 371
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 132/255 (51%), Gaps = 41/255 (16%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N K L + H MLS D S+ C+ FS Y+ +F +P++Y +NT
Sbjct: 52 SNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFS--HYSHSIFTHKTRPDIYLYNT 109
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------ 147
+I+A S+ + ++ +++ +++ + F + ++LPFV+KA R + VG+ IH
Sbjct: 110 IIKALSNPELATEAILLYNRILASDLRF-DTYSLPFVLKAVVRLLAIHVGRQIHCQAIGT 168
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG-------F 200
G+ D V++ +LI Y+ CG ++ A +F + +DV WN+M++G+ + G
Sbjct: 169 GLVSDIHVVT-ALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHL 227
Query: 201 FEK------------------------AIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
FE+ AI ++R M++E V+PDE+ M+ LSACA L
Sbjct: 228 FERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGAL 287
Query: 237 EFGIWVSSHIEKNGI 251
E G W+ ++I+K+G+
Sbjct: 288 ELGEWIHNYIDKHGL 302
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ ++ AR +F+++P+ N+ +W +I Y+ D P ++ +F ++ P+E +
Sbjct: 216 AKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVE-PDEIAM 274
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A A +G+ IH + + ++N+LI YA CG + A VF +
Sbjct: 275 LAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEH 334
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
K V++W SMI G G +A+E++ ME +KP+E+T V +LSAC +E G W
Sbjct: 335 KSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRW 393
>gi|15228026|ref|NP_181211.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216191|sp|Q9ZQA1.1|PP188_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36730
gi|4415918|gb|AAD20149.1| hypothetical protein [Arabidopsis thaliana]
gi|330254198|gb|AEC09292.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 501
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 10/216 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K L +IH Q+ + D + S+L +LS L +AR + TWN L R
Sbjct: 27 KHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDSTPSTWNMLSR 86
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI------HGMF 150
YSSSD P++S ++ ++ PN+ T PF++KA A + G+ I HG F
Sbjct: 87 GYSSSDSPVESIWVYSEMKRRGIK-PNKLTFPFLLKACASFLGLTAGRQIQVEVLKHG-F 144
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ D+ + N+LIH Y C + A VF + +++VVSWNS+++ VE G E + E
Sbjct: 145 DFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLNLVFECFCE 204
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
M + PDE TMVV+LSAC +L G V S +
Sbjct: 205 MIGKRFCPDETTMVVLLSACGG--NLSLGKLVHSQV 238
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 103/198 (52%), Gaps = 11/198 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++I ++L F FD Y + L T ARK+FD++ + N+ +WN+++ A
Sbjct: 133 RQIQVEVLKHGFDFDVYVGNNLIH--LYGTCKKTSDARKVFDEMTERNVVSWNSIMTALV 190
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ + F F +++ + P+E T+ ++ A + +G+ +H E +
Sbjct: 191 ENGKLNLVFECFCEMI-GKRFCPDETTMVVLLSACGGNLS--LGKLVHSQVMVRELELNC 247
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +L+ YA G L A VF + K+V +W++MI G + GF E+A++L+ +M E
Sbjct: 248 RLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKE 307
Query: 215 -NVKPDEVTMVVVLSACA 231
+V+P+ VT + VL AC+
Sbjct: 308 SSVRPNYVTFLGVLCACS 325
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 146 IHGM-----FEDDLVISNSLIHF--YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
IHG ++D I + L+ ++ DLA A + + +WN + G+
Sbjct: 32 IHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDSTPSTWNMLSRGYSSS 91
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++I +Y EM+ +KP+++T +L ACA L G + + K+G D+
Sbjct: 92 DSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDFDV 148
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 132/255 (51%), Gaps = 41/255 (16%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N K L + H MLS D S+ C+ FS Y+ +F +P++Y +NT
Sbjct: 52 SNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFS--HYSHSIFTHKTRPDIYLYNT 109
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------ 147
+I+A S+ + ++ +++ +++ + F + ++LPFV+KA R + VG+ IH
Sbjct: 110 IIKALSNPELATEAILLYNRILASDLRF-DTYSLPFVLKAVVRLLAIHVGRQIHCQAIGT 168
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG-------F 200
G+ D V++ +LI Y+ CG ++ A +F + +DV WN+M++G+ + G
Sbjct: 169 GLVSDIHVVT-ALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHL 227
Query: 201 FEK------------------------AIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
FE+ AI ++R M++E V+PDE+ M+ LSACA L
Sbjct: 228 FERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGAL 287
Query: 237 EFGIWVSSHIEKNGI 251
E G W+ ++I+K+G+
Sbjct: 288 ELGEWIHNYIDKHGL 302
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ ++ AR +F+++P+ N+ +W +I Y+ D P ++ +F ++ P+E +
Sbjct: 216 AKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVE-PDEIAM 274
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A A +G+ IH + + ++N+LI YA CG + A VF +
Sbjct: 275 LAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEH 334
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
K V++W SMI G G +A+E++ ME +KP+E+T V +LSAC +E G W
Sbjct: 335 KSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRW 393
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 44/259 (16%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N +LK IHA ++ + +K+ C L YA +F Q+ +PN Y +N +
Sbjct: 26 NIVELKSIHAHVIKYSLSQSSFLVTKMVDVC--DKTEDLGYASLLFKQVKEPNGYLYNAM 83
Query: 95 IRAYSSSDEPIQSFMIFLQLVY------NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
IRA++ + + + + +++ +P FP+ FT PFVIK+ + V + +G+ +H
Sbjct: 84 IRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHA 143
Query: 149 MF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS------------- 190
+ ++ + N+LI Y C L A+ VF + ++D +SWNS
Sbjct: 144 HLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRK 203
Query: 191 ------------------MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
MISG+ G + A+ ++R+M++ V+PDE++++ VL ACA+
Sbjct: 204 AGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQ 263
Query: 233 KRDLEFGIWVSSHIEKNGI 251
LE G W+ + ++NG+
Sbjct: 264 LGALEVGKWIHMYCDRNGL 282
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 8/167 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+ A +FD +P + +W +I Y+ + +F Q+ P+E ++ V
Sbjct: 199 GQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVE-PDEISIISV 257
Query: 131 IKAAARPVQFRVGQAIHGMFED------DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+ A A+ VG+ IH M+ D I N+L+ Y+ CG + AY +F + K D
Sbjct: 258 LPACAQLGALEVGKWIH-MYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGD 316
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
V+SW++MI G G +AIEL++ M+ ++P+ +T + +LSACA
Sbjct: 317 VISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACA 363
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 129/258 (50%), Gaps = 13/258 (5%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLT------NQKQLKRIHAQMLSTDFFFDPYSASKLFTP 64
+P P + + N Q+ +L + ++ K++H Q+L F D + +S +
Sbjct: 14 LPSKDLPQSSSELNLKQKEQEYLCLVKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLAT 73
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
CALS ++S++YA +F Q+ +P + +NT+IR Y ++ + ++ ++ P+
Sbjct: 74 CALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDML-QREVEPDN 132
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
FT P V+KA AR + G IHG EDD+ + NSLI+ Y C D+ M+ +F
Sbjct: 133 FTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRR 192
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV-KPDEVTMVVVLSACAKKRDLEF 238
+ +K V SW+++I+ + + + L+ +M E + +E +V VLSAC
Sbjct: 193 MEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHL 252
Query: 239 GIWVSSHIEKNGIKMDLT 256
G + KN ++++
Sbjct: 253 GRCAHGSLLKNITELNVA 270
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 7/205 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IH + D Y + L +E + +F ++ Q ++ +W+ +I A++S
Sbjct: 153 QIHGHVFKLGLEDDVYVQNSLIN--MYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHAS 210
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLV 155
+ +F + + E L V+ A F +G+ HG E ++
Sbjct: 211 LAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVA 270
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ SL+ Y CG L C+F + +K+ +S++ +ISG G+ +A++++ EM E
Sbjct: 271 VMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEG 330
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGI 240
++PD+VT V VLSAC+ ++ G+
Sbjct: 331 LEPDDVTYVSVLSACSHSGLVDEGL 355
>gi|357511223|ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500915|gb|AES82118.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 467
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 123/232 (53%), Gaps = 9/232 (3%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQ-IPQPNLYT 90
F Q +K+I AQ++ + A L T A + + L Y +F IP+P+++
Sbjct: 19 FCRTQIHVKQIQAQIIIHNLQSHTTIAEHLIT--ASQSHNLLNYVSPLFTHLIPKPHVFI 76
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
+N+LIRA+S S P ++ + NS PN FT PF+ K+ + F Q ++
Sbjct: 77 FNSLIRAFSHSHIPNTPLSLYSHMHKNS-ILPNNFTFPFLFKSLSDSHDFVQSQCVYTHV 135
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
+ +D+ ++NSL+ YA G L + +F + ++DVVSW MI G+ GG + A+
Sbjct: 136 IKLGYVNDIYVNNSLLDVYASYGCLELCRQLFDEMPQRDVVSWTVMIMGYRNGGKYNDAL 195
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
++ +M+ V P+ VTMV LSACA +E G+W+ + +NG ++D+
Sbjct: 196 LVFEQMQYGGVVPNRVTMVNALSACASSCAIEMGVWIDDMVRRNGWELDVIL 247
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 8/212 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q + ++ ++ + D Y + L +++ LE R++FD++PQ ++ +W +I
Sbjct: 127 QSQCVYTHVIKLGYVNDIYVNNSLLD--VYASYGCLELCRQLFDEMPQRDVVSWTVMIMG 184
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y + + + ++F Q+ Y PN T+ + A A +G I M +E
Sbjct: 185 YRNGGKYNDALLVFEQMQYGG-VVPNRVTMVNALSACASSCAIEMGVWIDDMVRRNGWEL 243
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+++ +LI Y CG + VF + +K+V + N +I G E+A+ + ME
Sbjct: 244 DVILGTALIDMYVKCGRVEEGLKVFCDMKEKNVFTLNVVIKGLALAKSVEEALLWFNRME 303
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
++ V+ DEVT+V VLSAC+ +E G ++ S
Sbjct: 304 LDGVRADEVTLVTVLSACSHSGLVEKGRFIFS 335
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 131/273 (47%), Gaps = 45/273 (16%)
Query: 27 QRHPHF-----LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFD 81
++HP+ N K+IH+ ++ T + SKL CA+S L YA +F+
Sbjct: 27 EQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFE 86
Query: 82 QIPQP---NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138
+ Q N++ WN+LIR YS S P+ S +F +++Y PN T PF+ K+ +
Sbjct: 87 ENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQ-PNSHTFPFLFKSCTKAK 145
Query: 139 QFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVF-------------VMI 180
G+ +H + + S+IH YA G++ A VF ++
Sbjct: 146 ATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALIT 205
Query: 181 GK------------------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
G KDVVSWN+MISG+V+ G FE+AI + EM+ NV P++ T
Sbjct: 206 GYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKST 265
Query: 223 MVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
MVVVLSAC R E G W+ S + NG +L
Sbjct: 266 MVVVLSACGHTRSGELGKWIGSWVRDNGFGSNL 298
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 10/230 (4%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIP 84
+PH T+ + +M FD S + AL T L+ AR++FD+IP
Sbjct: 165 NPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIP 224
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
++ +WN +I Y S ++ + F ++ + PN+ T+ V+ A +G+
Sbjct: 225 VKDVVSWNAMISGYVQSGRFEEAIVCFYEM-QEANVLPNKSTMVVVLSACGHTRSGELGK 283
Query: 145 AIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
I D+ L ++N+LI Y CG+ +A +F I +KDV+SWN+MI G+
Sbjct: 284 WIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLS 343
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+E+A+ L+ M NVKP++VT + +L ACA L+ G WV ++I+KN
Sbjct: 344 LYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKN 393
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 96/173 (55%), Gaps = 8/173 (4%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
+ AR++FD I + ++ +WNT+I YS ++ +F +++ S PN+ T ++ A
Sbjct: 315 DIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALF-EVMLRSNVKPNDVTFLGILHA 373
Query: 134 AARPVQFRVGQAIHGMFEDDLVISN------SLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A +G+ +H + +L S+ SLI YA CG + A VF + +++ S
Sbjct: 374 CACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS 433
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENV-KPDEVTMVVVLSACAKKRDLEFG 239
WN+M+SGF G E+A+ L+ EM + + +PD++T V VLSAC + ++ G
Sbjct: 434 WNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLG 486
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E A ++F + NL +WN ++ ++ ++ +F ++V + P++ T V
Sbjct: 414 GCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGV 473
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + +G H F S+I Y + L C+ ++ + +
Sbjct: 474 LSACTQAGLVDLG---HQYFR-------SMIQDYGISPKLQHYGCMIDLLARAEK----- 518
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
FE+A L + ME+E PD +LSAC +EFG +V+ +
Sbjct: 519 ----------FEEAEILMKNMEME---PDGAIWGSLLSACKAHGRVEFGEYVAERL 561
>gi|255556578|ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541638|gb|EEF43187.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 37/252 (14%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
L++ H+Q++ D + ++L ALS L YA K+FD IP P+ + +NT+I+AY
Sbjct: 60 LRQYHSQIIRLGLSADKHVMTQLINFSALSNNRDLAYAIKLFDSIPNPDAFFYNTIIKAY 119
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
P S +++ ++ +S FPN+FT P VI+A ++G+ IH F
Sbjct: 120 LQHLSPTNSILLYSHMLQHS-VFPNDFTFPSVIRACCIHDDIQLGKQIHAHVLKLGFGAH 178
Query: 154 LVISNSLIHFYAVCGDLAMAYC-------------------------------VFVMIGK 182
++ N+LIH YA A C VF + +
Sbjct: 179 VISLNNLIHMYARFQAFEEARCVLYSMPEQNFISWTTLISGYSQWGLVDEAFRVFQSMPE 238
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
++ SWN+MI+ +V+G F ++ L+ M E V D+ +LSAC LE G W+
Sbjct: 239 RNSASWNAMIAAYVQGNRFHESFALFDRMRAEGVVLDKFVAATMLSACTGLGALEQGKWI 298
Query: 243 SSHIEKNGIKMD 254
+IEK GI+ D
Sbjct: 299 HGYIEKKGIEKD 310
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S + ++ A ++F +P+ N +WN +I AY + +SF +F ++ ++F
Sbjct: 221 SQWGLVDEAFRVFQSMPERNSASWNAMIAAYVQGNRFHESFALFDRMRAEGVVL-DKFVA 279
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ A G+ IHG E D ++ ++I Y CG L A VF +
Sbjct: 280 ATMLSACTGLGALEQGKWIHGYIEKKGIEKDSKLATAIIDMYCKCGSLEKALEVFKGLPH 339
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
K + SWN MI G G E AIEL++EME E + PD +T V +LSACA
Sbjct: 340 KGISSWNCMIGGLAMHGKGEAAIELFKEMEKEMLAPDRITFVNLLSACA 388
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 120/224 (53%), Gaps = 8/224 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T+++ L +IH +++ + + + +KL S + YARK+FD+ P+++ WN
Sbjct: 67 THKRHLDQIHNRLVISGLQHNGFLMTKLVN--GSSNLGQICYARKLFDEFCYPDVFMWNA 124
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IR+YS ++ + ++ + + + P+ FT P+V+KA + F + IHG
Sbjct: 125 IIRSYSRNNMYRDTVEMYRWMRWTGVH-PDGFTFPYVLKACTELLDFGLSCIIHGQIIKY 183
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F D+ + N L+ YA CG + +A VF + + +VSW S+ISG+ + G +A+ ++
Sbjct: 184 GFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMF 243
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+M VKPD + +V +L A DLE G + + K G++
Sbjct: 244 SQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLE 287
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 14/222 (6%)
Query: 42 IHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
IH Q++ F D + + L+ C + A+ +FD + + +W ++I Y
Sbjct: 176 IHGQIIKYGFGSDVFVQNGLVALYAKCG-----HIGVAKVVFDGLYHRTIVSWTSIISGY 230
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ + + +++ +F Q+ N+ P+ L +++A G++IHG ED+
Sbjct: 231 AQNGKAVEALRMFSQM-RNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDE 289
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ SL FYA CG + +A F + +V+ WN+MISG+ + G E+A+ L+ M
Sbjct: 290 PALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMIS 349
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
N+KPD VT+ + A A+ LE W+ ++ K+ D+
Sbjct: 350 RNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDI 391
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 14/202 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q + IH ++ +P S + + C L T A+ FDQ+ N+ WN
Sbjct: 272 EQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTV-----AKSFFDQMKTTNVIMWNA 326
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-----HG 148
+I Y+ + ++ +F ++ + P+ T+ + A+A+ + Q +
Sbjct: 327 MISGYAKNGHAEEAVNLFHYMISRNIK-PDSVTVRSAVLASAQVGSLELAQWMDDYVSKS 385
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ D+ ++ SLI YA CG + A VF KDVV W++MI G+ G +AI LY
Sbjct: 386 NYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLY 445
Query: 209 REMEVENVKPDEVTMVVVLSAC 230
M+ V P++VT + +L+AC
Sbjct: 446 HVMKQAGVFPNDVTFIGLLTAC 467
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%)
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
DV WN++I + + +E+YR M V PD T VL AC + D +
Sbjct: 118 DVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIH 177
Query: 244 SHIEKNGIKMDL 255
I K G D+
Sbjct: 178 GQIIKYGFGSDV 189
>gi|356515240|ref|XP_003526309.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 560
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 62 FTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
FTP L + YA+ +F QI N + WN++IR Y+ ++ P ++ +++ ++++ +
Sbjct: 4 FTPITLQPACGHMPYAQHIFHQIVLKNSFLWNSMIRGYACNNSPSKALILYREMLHFG-H 62
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYC 175
P+ FT PFV+KA + +G+ +H G E+D+ + NS++ Y GD+A A
Sbjct: 63 KPDNFTYPFVLKACGDLLLREIGRKVHALVVVGGLEEDVYVGNSILSMYFTFGDVAAARV 122
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F + +D+ SWN+M+SGFV+ G A E++ +M + D +T++ +LSAC D
Sbjct: 123 MFDKMPVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDGITLLALLSACGDVMD 182
Query: 236 LEFGIWVSSHIEKNG 250
L+ G + ++ +NG
Sbjct: 183 LKAGREIHGYVVRNG 197
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 11/217 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++HA ++ D Y + + + TF + AR MFD++P +L +WNT++ +
Sbjct: 86 RKVHALVVVGGLEEDVYVGNSILS--MYFTFGDVAAARVMFDKMPVRDLTSWNTMMSGFV 143
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL----- 154
+ E +F +F + + + + TL ++ A + + G+ IHG +
Sbjct: 144 KNGEARGAFEVFGDMRRDG-FVGDGITLLALLSACGDVMDLKAGREIHGYVVRNGGNRRL 202
Query: 155 ---VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ NS+I Y C ++ A +F + KDVVSWNS+ISG+ + G +EL+ M
Sbjct: 203 CNGFLMNSIICMYCNCESMSFARKLFEGLRVKDVVSWNSLISGYEKCGDAFLVLELFGRM 262
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
V PDEVT+ VL AC + L G V S++ K
Sbjct: 263 VVVGAVPDEVTVTSVLGACNQISALRLGASVQSYVVK 299
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 81/199 (40%), Gaps = 24/199 (12%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C S+ +ARK+F+ + ++ +WN+LI Y + +F ++V P+E
Sbjct: 213 CMYCNCESMSFARKLFEGLRVKDVVSWNSLISGYEKCGDAFLVLELFGRMVVVGA-VPDE 271
Query: 125 FTLPFVIKAAARPVQFRVGQAIHG---------MFEDDLVISNSLIHFYAVCGDLAMAYC 175
T+ V+ A + R+G ++ M E L ++ + + G A
Sbjct: 272 VTVTSVLGACNQISALRLGASVQSYVVKRVFDEMPEKILAACTVMVTGFGIHGRGREAIS 331
Query: 176 VFVMIGKKDVVSWNSMISGFVEGG-----------FFEKA---IELYREMEVENVKPDEV 221
+F + K V S + + ++ G +A E Y +E +KP+E
Sbjct: 332 IFYEMLGKGVTSDEGIFTARLQRGARATHYSCLVDLLGRAGYLAEAYGVIENMKLKPNED 391
Query: 222 TMVVVLSACAKKRDLEFGI 240
+LSAC R+++ +
Sbjct: 392 VWTALLSACRLHRNVKLAV 410
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%)
Query: 167 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
CG + A +F I K+ WNSMI G+ KA+ LYREM KPD T V
Sbjct: 13 CGHMPYAQHIFHQIVLKNSFLWNSMIRGYACNNSPSKALILYREMLHFGHKPDNFTYPFV 72
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
L AC E G V + + G++ D+
Sbjct: 73 LKACGDLLLREIGRKVHALVVVGGLEEDV 101
>gi|414866221|tpg|DAA44778.1| TPA: hypothetical protein ZEAMMB73_421222 [Zea mays]
Length = 595
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 128/229 (55%), Gaps = 18/229 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++HA+++++ + ASKL + S + L+ AR++FD IP+P+++ WN ++ A S
Sbjct: 34 RQLHARLVASSVTPSNFLASKLIS--LYSRGAHLDDARRVFDAIPRPSVFAWNAILIALS 91
Query: 100 -SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA--RPVQFRVGQAIHGM-----FE 151
S +P + +F S P+E TL ++K+ A P + +H + F
Sbjct: 92 LHSADPSDAARLFAA----SGISPDEITLSALLKSLADSGPRLSALVAEVHAVAVQRGFG 147
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DDL +SN LI YA GD A VF + ++DVVSWNS+IS + G++ + +EL++E+
Sbjct: 148 DDLFVSNGLITAYANAGDSRSARAVFDEMPRRDVVSWNSLISSYARAGWYRQCLELFQEL 207
Query: 212 E----VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
V+P+ VT+ VL ACA+ + ++FG+ V +NG+ D+
Sbjct: 208 ASVHGAGGVRPNNVTVASVLHACAQLKAVDFGVRVHRLAAENGLDSDIA 256
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 10/186 (5%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+ +HA + F D + ++ L T A + AR +FD++P+ ++ +WN+LI +Y
Sbjct: 134 VAEVHAVAVQRGFGDDLFVSNGLIT--AYANAGDSRSARAVFDEMPRRDVVSWNSLISSY 191
Query: 99 SSSDEPIQSFMIFLQLVY---NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
+ + Q +F +L PN T+ V+ A A+ G +H +
Sbjct: 192 ARAGWYRQCLELFQELASVHGAGGVRPNNVTVASVLHACAQLKAVDFGVRVHRLAAENGL 251
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ D+ + NS + FYA CG L A +F + KKD VS+++MI+G++ G + +EL++
Sbjct: 252 DSDIAVWNSAVGFYAKCGRLKYARELFDGMAKKDAVSYSTMIAGYMNHGHVDMGLELFQR 311
Query: 211 MEVENV 216
+V+ +
Sbjct: 312 ADVQGI 317
>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
Length = 736
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 10/229 (4%)
Query: 37 KQLKRIHAQMLSTDFF-FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
KQ + +HA +L T FD + L T A LE ARK FD++ + L TWN LI
Sbjct: 75 KQGQLLHAMILETQLLEFDIILGTALITMYA--RCRDLELARKTFDEMGKKTLVTWNALI 132
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSP--YFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
YS + + + I+ +V SP P+ T + A + G+ I
Sbjct: 133 AGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVAS 192
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ D ++ N+LI+ Y+ CG L A VF + +DV++WN+MISG+ + G +A+EL+
Sbjct: 193 GYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELF 252
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ M + KP+ VT + +L+AC DLE G + ++++G + DL
Sbjct: 253 QRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVI 301
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q + I A+ +++ + D + L S SLE ARK+FD++ ++ WNT+I
Sbjct: 181 QGREIEARTVASGYASDSIVQNALIN--MYSKCGSLESARKVFDRLKNRDVIAWNTMISG 238
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y+ Q+ +F ++ N P PN T ++ A G+AIH +E
Sbjct: 239 YAKQGAATQALELFQRMGPNDPK-PNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYES 297
Query: 153 DLVISNSLIHFYAVCGD-LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DLVI N L++ Y C L A VF + +DV++WN +I +V+ G + A++++++M
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
++ENV P+E+T+ VLSACA G V + I K D+ E
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLE 404
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 10/185 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++T C+ SSLE AR++F+++ ++ TWN LI AY + + IF Q+ +
Sbjct: 308 MYTKCS----SSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN-V 362
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYC 175
PNE TL V+ A A R G+A+H G + D+V+ NSL++ Y CG L
Sbjct: 363 APNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVG 422
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF I K +VSW+++I+ + + G +E + E+ E + D+VTMV LSAC+
Sbjct: 423 VFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGM 482
Query: 236 LEFGI 240
L+ G+
Sbjct: 483 LKEGV 487
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 10/193 (5%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+ A +F I PN +W ++ A++ + ++ + ++V P+
Sbjct: 6 GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEG-LRPDGAMFVVA 64
Query: 131 IKAAARPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
I + + GQ +H M E D+++ +LI YA C DL +A F +GKK
Sbjct: 65 IGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREM---EVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+V+WN++I+G+ G A+++Y++M E +KPD +T L AC+ D+ G
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGRE 184
Query: 242 VSSHIEKNGIKMD 254
+ + +G D
Sbjct: 185 IEARTVASGYASD 197
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
Y CG +A A VF I + VSW +++ F G + +A+ YR M +E ++PD
Sbjct: 1 MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60
Query: 223 MVVVLSACAKKRDLEFG 239
VV + C+ +DL+ G
Sbjct: 61 FVVAIGVCSSSKDLKQG 77
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 132/277 (47%), Gaps = 46/277 (16%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQ----KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF 70
+P LT Q+H L K+LK+IH Q++ F + KL + T
Sbjct: 6 ASPANLTGLRALQQHFFSLLQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLS--FYITS 63
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+L A K+F++I P+ WN +IR +S S+ P + ++ ++V + PNEFT F+
Sbjct: 64 GNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMV-EAEAEPNEFTYSFL 122
Query: 131 IKAAARPVQFRVGQAIHG---------------------------------------MFE 151
I AR R G+ +HG + +
Sbjct: 123 IGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVD 182
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++V NSL+ Y CGD+ A +F + +++VVSW +MI+G + G ++A+ L+ EM
Sbjct: 183 RNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEM 242
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
VK D+V +V LSACA+ DL+ G W+ S+I++
Sbjct: 243 RRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDE 279
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 93/173 (53%), Gaps = 13/173 (7%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++ AR++FD++P+ N+ +W T+I + Q+ +F ++ + ++ L
Sbjct: 199 GDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEM-RRAGVKLDQVALVAA 257
Query: 131 IKAAARPVQFRVGQAIHGMFEDDL---------VISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ A A ++G IH ++ L ++NSLIH YA CG + AY VF+ +
Sbjct: 258 LSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQ 317
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREME---VENVKPDEVTMVVVLSACA 231
++ +SW SMI+GF + G E+A+ +++ M+ + +PD +T + VL AC+
Sbjct: 318 QRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACS 370
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
L+ FY G+L A+ VF I WN MI G + K +ELY M +P+
Sbjct: 56 LLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPN 115
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
E T ++ CA+ R L G V + NG
Sbjct: 116 EFTYSFLIGGCARSRLLREGEQVHGRVVANG 146
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 156/332 (46%), Gaps = 86/332 (25%)
Query: 5 STPVISIPRHPNPTTLTVNNGHQ----RHP-HFLT------NQKQLKRIHAQMLSTDFFF 53
STP +S P P+ T N Q R P H ++ N K L ++H ++ T
Sbjct: 6 STPYLS----PVPSKTTALNSQQKQHLRKPDHAISLLQNCKNPKDLIQLHTLLIKTSLIK 61
Query: 54 DPYSASKLFTPCA-LSTFSSLEYARKMFDQIPQP-NLYTWNTLIRAYSSSDEPIQSFMIF 111
+ Y+ +L A SL YA+K+FD + P N + + T+I+AY++ P ++F +
Sbjct: 62 EKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFY 121
Query: 112 LQLVYNSPY-FPNEFTLPFVIKAAAR-----------------PVQF------------- 140
+++ + Y +PN+FT +V A ++ P +F
Sbjct: 122 SRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYG 181
Query: 141 ---RVGQAIHGMFED----DLVISNSLIHFYAVCGD------------------------ 169
VG + +F+ D+V N LI+ Y GD
Sbjct: 182 KVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLV 241
Query: 170 -------LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
L+ A C+F + K+++VSW+++I G+++ G + KA+EL++EM+V VK DEV
Sbjct: 242 GYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVI 301
Query: 223 MVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ +LSACA+ L+ G W+ +I+K+GIK+D
Sbjct: 302 VTTLLSACARLGALDQGRWLHMYIDKHGIKVD 333
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 8/183 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L A +FD++P+ NL +W+ LI+ Y ++ +F ++ +E + ++
Sbjct: 249 LSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKM-DEVIVTTLLS 307
Query: 133 AAARPVQFRVGQAIHGMFED------DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A AR G+ +H M+ D D +S +LI Y+ CG + MA+ VF G K V
Sbjct: 308 ACARLGALDQGRWLH-MYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVF 366
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
W+SMI G F EKAIEL+ +M ++P E+T + +L+AC ++ G+ + + +
Sbjct: 367 VWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRM 426
Query: 247 EKN 249
+N
Sbjct: 427 VEN 429
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 110/185 (59%), Gaps = 6/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD+I Q +L +WN++I YS ++ +F +++ + + PNE +L V+ A
Sbjct: 181 ARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMM-EAGFQPNEMSLVSVLGACG 239
Query: 136 RPVQFRVGQAIHG-MFEDDLVIS----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
++G + + E+ + ++ ++LIH Y CGDL A +F + KKD V+WN+
Sbjct: 240 ELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNA 299
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI+G+ + G E+AI+L+++M + + PD++T++ +LSACA L+ G V + + G
Sbjct: 300 MITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERG 359
Query: 251 IKMDL 255
+ D+
Sbjct: 360 FQDDV 364
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 125/249 (50%), Gaps = 15/249 (6%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PNP +++ + KQLK+IHAQ+L T+ P S L+ L F+
Sbjct: 24 PNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLL-TNSIHKPNSF--LYKIADLKDFA--- 77
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
YA F I P Y++N +IR S++ + F + PN T PF+ A
Sbjct: 78 YASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIAC 137
Query: 135 ARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ + G+ H G+ ED V S+SLI YA CG + A VF I +KD+VSW
Sbjct: 138 SNLLAVENGRMGHCSVIRRGLDEDGHV-SHSLITMYARCGKMGDARKVFDEISQKDLVSW 196
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
NSMISG+ + +A+ L+REM +P+E+++V VL AC + DL+ G WV + +
Sbjct: 197 NSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVE 256
Query: 249 NGIKMDLTF 257
N KM L +
Sbjct: 257 N--KMTLNY 263
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD + + + TWN +I Y+ + ++ +F Q + S P++ TL ++ A A
Sbjct: 282 ARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLF-QDMRMSSTAPDQITLIGILSACA 340
Query: 136 RPVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ A F+DD+ + +L+ YA CG L A+ VF + K+ VSWN+
Sbjct: 341 SIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNA 400
Query: 191 MISGFVEGGFFEKAIELYREM--EVENVKPDEVTMVVVLSAC 230
MIS G ++A+ L++ M E V P+++T V VLSAC
Sbjct: 401 MISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSAC 442
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 29/169 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPF 129
SL+ A ++F +P N +WN +I A + + ++ +F ++ PN+ T
Sbjct: 378 GSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVG 437
Query: 130 VIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
V+ A +H D+ L H M F ++ K + ++
Sbjct: 438 VLSAC-----------VHAGLVDE---GRRLFH---------MMSSSFGLVPK--IEHYS 472
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
M+ F G E+A + M KPDEV + +L AC K+++++
Sbjct: 473 CMVDLFSRAGHLEEAWDFVMTMPE---KPDEVILGALLGACQKRKNIDI 518
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 110/185 (59%), Gaps = 6/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD+I Q +L +WN++I YS ++ +F +++ + + PNE +L V+ A
Sbjct: 181 ARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMM-EAGFQPNEMSLVSVLGACG 239
Query: 136 RPVQFRVGQAIHG-MFEDDLVIS----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
++G + + E+ + ++ ++LIH Y CGDL A +F + KKD V+WN+
Sbjct: 240 ELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNA 299
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI+G+ + G E+AI+L+++M + + PD++T++ +LSACA L+ G V + + G
Sbjct: 300 MITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERG 359
Query: 251 IKMDL 255
+ D+
Sbjct: 360 FQDDV 364
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 125/249 (50%), Gaps = 15/249 (6%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PNP +++ + KQLK+IHAQ+L T+ P S L+ L F+
Sbjct: 24 PNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLL-TNSIHKPNSF--LYKIADLKDFA--- 77
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
YA F I P Y++N +IR S++ + F + PN T PF+ A
Sbjct: 78 YASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIAC 137
Query: 135 ARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ + G+ H G+ ED V S+SLI YA CG + A VF I +KD+VSW
Sbjct: 138 SNLLAVENGRMGHCSVIRRGLDEDGHV-SHSLITMYARCGKMGDARKVFDEISQKDLVSW 196
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
NSMISG+ + +A+ L+REM +P+E+++V VL AC + DL+ G WV + +
Sbjct: 197 NSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVE 256
Query: 249 NGIKMDLTF 257
N KM L +
Sbjct: 257 N--KMTLNY 263
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 8/162 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD + + + TWN +I Y+ + ++ +F Q + S P++ TL ++ A A
Sbjct: 282 ARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLF-QDMRMSSTAPDQITLIGILSACA 340
Query: 136 RPVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ A F+DD+ + +L+ YA CG L A+ VF + KK+ VSWN+
Sbjct: 341 SIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNA 400
Query: 191 MISGFVEGGFFEKAIELYREM--EVENVKPDEVTMVVVLSAC 230
MIS G ++A+ L++ M E V P+++T V VLSAC
Sbjct: 401 MISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSAC 442
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 29/169 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPF 129
SL+ A ++F +P+ N +WN +I A + + ++ +F ++ PN+ T
Sbjct: 378 GSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVG 437
Query: 130 VIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
V+ A +H D+ L H M F ++ K + ++
Sbjct: 438 VLSAC-----------VHAGLVDE---GRRLFH---------MMSSSFGLVPK--IEHYS 472
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
M+ F G E+A + M KPDEV + +L AC K+++++
Sbjct: 473 CMVDLFSRAGHLEEAWDFVMTMPE---KPDEVILGALLGACQKRKNIDI 518
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 118/221 (53%), Gaps = 7/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ H+ + DP++ L T S + +ARK+FD+IP+ +L +WN++I Y+
Sbjct: 136 RAAHSLVFKLALHSDPHTTHSLIT--MYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYA 193
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDLV--- 155
+ ++ +F ++ + P+E +L V+ A +G+ + G + E +
Sbjct: 194 KAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNS 253
Query: 156 -ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++LI YA CGDL A +F + +DV++WN++ISG+ + G ++AI L+ M+ +
Sbjct: 254 YIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKED 313
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V +++T+ VLSACA L+ G + + + G + D+
Sbjct: 314 CVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDI 354
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 15/230 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI-PQPNLYTWN 92
++ K L+++HAQM+ P + L L F+ YA +F I P PN Y +N
Sbjct: 29 SSSKTLQQVHAQMVVKSSIHSPNN-HLLSKAIHLKNFT---YASLLFSHIAPHPNDYAFN 84
Query: 93 TLIRAYSSS--DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
+IRA +++ P+ + +F +++ S N F + A V +A H +
Sbjct: 85 IMIRALTTTWHHYPL-ALTLFHRMMSLSLSPNNFTFPFFFLSCANLAV-LSPARAAHSLV 142
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
D ++SLI Y+ CG +A A VF I ++D+VSWNSMI+G+ + G +A+
Sbjct: 143 FKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAV 202
Query: 206 ELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E++ EM + +PDE+++V VL AC + DLE G WV + + G+ ++
Sbjct: 203 EVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLN 252
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L AR++FD + ++ TWN +I Y+ + ++ +F + N+ TL V+
Sbjct: 269 LGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLF-HAMKEDCVTENKITLTAVLS 327
Query: 133 AAARPVQFRVGQAI-----HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A +G+ I F+ D+ ++ +LI YA CG LA A VF + +K+ S
Sbjct: 328 ACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEAS 387
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVE--NVKPDEVTMVVVLSAC 230
WN+MIS G ++A+ L++ M E +P+++T V +LSAC
Sbjct: 388 WNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSAC 432
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 29/170 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV-YNSPYFPNEFTLPF 129
SL A+++F ++PQ N +WN +I A +S + ++ +F + PN+ T
Sbjct: 368 GSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVG 427
Query: 130 VIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
++ A G + M +F ++ K + ++
Sbjct: 428 LLSACVHAGLVNEGYRLFDMMST-----------------------LFGLVPK--IEHYS 462
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
M+ G +A +L +M KPD+VT+ +L AC K++++ G
Sbjct: 463 CMVDLLARAGHLYEAWDLIEKMP---EKPDKVTLGALLGACRSKKNVDIG 509
>gi|297746380|emb|CBI16436.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 123/236 (52%), Gaps = 20/236 (8%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q+K+ HA +++T P +A+KL S+F SL YA ++FDQIP+P+++ +NT+I+A
Sbjct: 3 QIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKA 62
Query: 98 YSS-SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV------QFRVGQAIHGMF 150
++ S IFL +V S + PN +T FV KA + Q RV AI
Sbjct: 63 HAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRV-HAIKIGL 121
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E +L ++N++I YA G + A VF +D+ SWN MI G+V G +A E++ E
Sbjct: 122 ESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDE 181
Query: 211 M-EVENVKPDEVTMVVVLSACAKKR-----------DLEFGIWVSSHIEKNGIKMD 254
M E + V + V C K+ L+ G W+ +I+K+ IKM+
Sbjct: 182 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTVALDQGRWIHVYIDKSEIKMN 237
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 96/203 (47%), Gaps = 22/203 (10%)
Query: 59 SKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
S LF A+ + + ++ AR++FD +LY+WN +I Y S E ++ +F ++
Sbjct: 123 SNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEM 182
Query: 115 VYNSPYFPNEFTLPFV----IKAAA-------RPVQFRVGQAIHGMFEDDLVISN----- 158
+V K A + V G+ IH + + N
Sbjct: 183 SERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTVALDQGRWIHVYIDKSEIKMNERLLA 242
Query: 159 SLIHFYAVCGDLAMAYCVF--VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
SL+ YA CG++ A VF K V WN+MI G+ G ++AI+L+ +M+VE V
Sbjct: 243 SLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKV 302
Query: 217 KPDEVTMVVVLSACAKKRDLEFG 239
P++VT V +L+AC+ + +E G
Sbjct: 303 SPNKVTFVALLNACSHGKLVEEG 325
>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 8/221 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q + +H ++ + F D + L A SLE ARK+FD++P+ + TW TLI
Sbjct: 69 QGRIVHGHLIQSIFRHDLVMNNTLLNMYA--KCGSLEEARKVFDKMPERDFVTWTTLISG 126
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS D P + ++F Q++ + PNEFTL VIKAAA + G +HG F+
Sbjct: 127 YSQHDRPFDALVLFNQML-RFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDS 185
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++ + ++L+ Y G + A VF + ++ VSWN++I+G EKA+EL++ M
Sbjct: 186 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGML 245
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
E +P + + AC+ LE G WV +++ K+G K+
Sbjct: 246 REGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL 286
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 98/192 (51%), Gaps = 6/192 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ + ++ A+ +FD + N +WN LI ++ ++ +F Q + + P+ F+
Sbjct: 198 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELF-QGMLREGFRPSHFSY 256
Query: 128 PFVIKAAARPVQFRVGQAIHGMF---EDDLVI--SNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A + G+ +H + LV N+L+ YA G + A +F + K
Sbjct: 257 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 316
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DVVSWNS+++ + + GF +A+ + EM ++P+E++ + VL+AC+ L+ G
Sbjct: 317 RDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHY 376
Query: 243 SSHIEKNGIKMD 254
++K+GI ++
Sbjct: 377 YELMKKDGIVLE 388
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q K +HA M+ + ++ + L A S S+ ARK+FD++ + ++ +WN+L+
Sbjct: 270 EQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKS--GSIHDARKIFDRLAKRDVVSWNSLLT 327
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
AY+ ++ F ++ PNE + V+ A + G + + + D ++
Sbjct: 328 AYAQHGFGNEAVCWFEEM-RRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIV 386
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+ H+ + L A G +A+ EM +E
Sbjct: 387 LEAW-HYVTIVDLLGRA-------------------------GDLNRALRFIEEMPIE-- 418
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
P +L+AC ++ E G + + H+
Sbjct: 419 -PTAAIWKALLNACRMHKNTELGAYAAEHV 447
>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
Length = 693
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 127/253 (50%), Gaps = 24/253 (9%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFS 71
PN T TV L N ++ K +H +++ D + S L + C
Sbjct: 205 PNSVTFTVVVSSCTR---LLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCG----- 256
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
LE A+++F++IP+ N TWN +I YS + +S + L + + P TL +I
Sbjct: 257 CLEMAKEVFEKIPRKNAITWNAMITGYSLKGDS-RSCIELLMRMNDEGTKPTLMTLTSII 315
Query: 132 KAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A++R VQ R G+ IHG + D+ I SLI FY CG ++ A +F I K +VV
Sbjct: 316 YASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVV 375
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA------KKRDLEFGI 240
SWN MISG V G +A+ +Y M+ +VKPD +T LSAC+ K R+L + I
Sbjct: 376 SWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCI 435
Query: 241 WVSSHIEKNGIKM 253
++ +E N I M
Sbjct: 436 -INHKLEANEIVM 447
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 8/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+RIH +L T +D + S L A A K+FD+ PQ ++ WN +I Y
Sbjct: 126 RRIHNHLLKTGLIWDVFVGSSLMNMYA--KCDQFVDAIKLFDEFPQRDVGCWNAVISCYF 183
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
+ + F ++ + PN T V+ + R + G+ +H + D
Sbjct: 184 KDGKAEMALKTFDKM-KELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDA 242
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ ++L+ Y CG L MA VF I +K+ ++WN+MI+G+ G IEL M E
Sbjct: 243 FVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDE 302
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
KP +T+ ++ A ++ L G ++ +I +N I +D+
Sbjct: 303 GTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDI 343
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 12/226 (5%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARK--MFDQIPQP-NLYTWNT 93
KQ K IH ++ S F + + L FS +YA +F P ++ WN
Sbjct: 20 KQGKLIHQRIFSCGFQSNIVLSKSLIG----FYFSCHDYASAELVFQTNDCPLDVSLWNA 75
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED- 152
L+ AY+++ +++ +F QL NS P+ +T P V+KA + G+ IH
Sbjct: 76 LLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKT 135
Query: 153 ----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
D+ + +SL++ YA C A +F ++DV WN++IS + + G E A++ +
Sbjct: 136 GLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTF 195
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+M+ +P+ VT VV+S+C + +LE G V + + I +D
Sbjct: 196 DKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLD 241
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F I + + +WN +I + IQ+ I+ + + P+ T + A +
Sbjct: 362 AETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVK-PDALTFSSTLSACS 420
Query: 136 RPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G+ +H E + ++ +L+ YA CGD+ A +F + K+D+VSW S
Sbjct: 421 QLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTS 480
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI + G +A+ L+ EM+ NV+ D VT + VLSAC+
Sbjct: 481 MIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACS 521
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF-VM 179
TL ++ + G+ IH F+ ++V+S SLI FY C D A A VF
Sbjct: 5 TLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTN 64
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEF 238
DV WN+++S + F +A++L+ ++ + V+PD T VVL AC + +
Sbjct: 65 DCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIY 124
Query: 239 GIWVSSHIEKNGIKMDL 255
G + +H+ K G+ D+
Sbjct: 125 GRRIHNHLLKTGLIWDV 141
>gi|302791205|ref|XP_002977369.1| hypothetical protein SELMODRAFT_51693 [Selaginella moellendorffii]
gi|300154739|gb|EFJ21373.1| hypothetical protein SELMODRAFT_51693 [Selaginella moellendorffii]
Length = 541
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q R+H +L++ +P A+ + C S L AR+ FD+ ++ TW T+I A
Sbjct: 144 QATRLHDLLLASGIAVEPSVANAILNAC--SKNGGLIAARRAFDRTLHRDIITWTTMIDA 201
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI--HGMFEDDLV 155
YS S +F +F ++++ PN+ T ++K + + R AI +E + +
Sbjct: 202 YSESGISSAAFQLFRLMLHDGHLVPNKITFVALLKGCSILPEARFLDAIIRESGYESNSI 261
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
I+N+LI ++ CG A F + KD + W +I+ + E G ++A+ LY ME E
Sbjct: 262 IANNLIKAFSRCGSPDHARAAFERVISKDTILWTGLITAYAEHGLHDEALRLYALMESEG 321
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ PD +T +L CA+ + G V + I K+GI++D E
Sbjct: 322 LAPDRITYTTILDVCARSTAIAEGKLVHAAIAKSGIELDTALE 364
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A S S ++AR F+++ + W LI AY+ ++ ++ L+ + P+
Sbjct: 269 AFSRCGSPDHARAAFERVISKDTILWTGLITAYAEHGLHDEALRLY-ALMESEGLAPDRI 327
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T ++ AR G+ +H E D + NS+++ Y CG +A F I
Sbjct: 328 TYTTILDVCARSTAIAEGKLVHAAIAKSGIELDTALENSILNMYGKCGKMAETREFFASI 387
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
D++SW+ IS G +A+EL+REM V+ D V +LSAC
Sbjct: 388 RHPDLLSWSIYISSHAHHGHGRRALELFREMVHAGVEADYSAFVNILSAC 437
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ L ++K + V VG+ IH M + ++ + N++I Y CG +A A
Sbjct: 23 PSSHILVPLLKLCSTAVFLAVGRTIHAMVAERGLDREIFVGNTIITMYRKCGTMADAIDY 82
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + +++ +SWN++++ F E G E+A++ + M+ E P+ VT + +L + + K L
Sbjct: 83 FRAMPQRNTISWNAIVTAFAENGDREEAMDSFHRMQHEGFLPNRVTFLAMLGSLSGKNAL 142
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Query: 80 FDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139
F +PQ N +WN ++ A++ + + ++ F ++ + + PN T ++ + +
Sbjct: 83 FRAMPQRNTISWNAIVTAFAENGDREEAMDSFHRMQHEG-FLPNRVTFLAMLGSLSGKNA 141
Query: 140 FRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
+H + + ++N++++ + G L A F +D+++W +MI
Sbjct: 142 LIQATRLHDLLLASGIAVEPSVANAILNACSKNGGLIAARRAFDRTLHRDIITWTTMIDA 201
Query: 195 FVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACA 231
+ E G A +L+R M + ++ P+++T V +L C+
Sbjct: 202 YSESGISSAAFQLFRLMLHDGHLVPNKITFVALLKGCS 239
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 124/255 (48%), Gaps = 43/255 (16%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK IHA+ + +K+F A+S L YA ++F QI QPN + +NTLIR
Sbjct: 255 QALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIR 314
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR-----PVQFRVGQAIHGM-- 149
YS S P QS +F Q+ N P+ FT F++K +R P+ IHG
Sbjct: 315 GYSKSSSPSQSVQLFNQMRRNCVD-PDGFTFTFLLKGRSRMRIDLPL-IVASDEIHGAVL 372
Query: 150 ---FEDDLVISNSLIHFYAV-------------------------------CGDLAMAYC 175
F L + N+LIH YA G+L +A
Sbjct: 373 KLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQ 432
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + ++DVVSW M+SG+ + +A+EL+REM V+PDEV MV+V+SAC D
Sbjct: 433 VFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVISACTSLGD 492
Query: 236 LEFGIWVSSHIEKNG 250
LE G V +I++NG
Sbjct: 493 LETGFEVHRYIDENG 507
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 100/200 (50%), Gaps = 16/200 (8%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE AR++FD++P+ ++ +W ++ Y+ + ++ +F ++ + P+E + V
Sbjct: 425 GELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREM-RDVGVRPDEVAMVIV 483
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I A G +H +++ + + N+LI YA CG + +A+ VF + +K +
Sbjct: 484 ISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSL 543
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR--DLEFGIW-- 241
++WNSMIS G E A ++ M ++PD VT + +L+A K D +G++
Sbjct: 544 ITWNSMISACANHGNAEDAFRVFTLMLXSGIRPDGVTFLALLTAYTHKGWVDDGYGLFES 603
Query: 242 ------VSSHIEKNGIKMDL 255
V + +E G +D+
Sbjct: 604 MQRDYGVEAGVEHYGCMVDM 623
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK IHA+ + +K+F A+S L YA ++F QI QPN + +NTLIR
Sbjct: 101 QALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIR 160
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
YS S P QS +F Q+ N P+ FT F++K +R
Sbjct: 161 GYSKSSSPSQSVQLFNQMRRNCVD-PDGFTFTFLLKGRSR 199
>gi|242053799|ref|XP_002456045.1| hypothetical protein SORBIDRAFT_03g029460 [Sorghum bicolor]
gi|241928020|gb|EES01165.1| hypothetical protein SORBIDRAFT_03g029460 [Sorghum bicolor]
Length = 615
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 121/242 (50%), Gaps = 15/242 (6%)
Query: 27 QRHP---HF--LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS-LEYARKMF 80
QRHP H +++ L +HA+++ D A +L A + YAR +F
Sbjct: 16 QRHPLLTHLDACSSRAHLAELHARLVRAHLAPDSAVAGRLVALLASPALGDDMRYARMVF 75
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
D I QPN WN +IR Y++ P + F +++ P+ +T+ + A+A +
Sbjct: 76 DGISQPNAAVWNCMIRGYTNHGAPSDALATFRAMLWRG-VSPDSYTMAAAVSASAAFANW 134
Query: 141 R---VGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
+ G A+H M DL + + L++ Y A VFV + ++DVVSW SMI
Sbjct: 135 QWRATGDAVHAMVRKIGCASDLFVMSGLVNLYGTFRSAEDARKVFVEMHERDVVSWTSMI 194
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
S F + G ++ A+ EM+ + + P++VT++ +LSAC + ++ G WV + + GI+
Sbjct: 195 SAFAQCGMWDDALRFLAEMQADGISPNKVTVISLLSACGHTQTVDKGRWVYGQLSEYGIE 254
Query: 253 MD 254
D
Sbjct: 255 PD 256
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 16/206 (7%)
Query: 58 ASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMI 110
AS LF L TF S E ARK+F ++ + ++ +W ++I A++ D+ ++
Sbjct: 153 ASDLFVMSGLVNLYGTFRSAEDARKVFVEMHERDVVSWTSMISAFAQCGMWDDALR---- 208
Query: 111 FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYA 165
FL + PN+ T+ ++ A G+ ++G E D I NS I YA
Sbjct: 209 FLAEMQADGISPNKVTVISLLSACGHTQTVDKGRWVYGQLSEYGIEPDADIGNSAISMYA 268
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
CG ++ A VF + + SWN +I GFV+ ++A+ +++EM + PD VT+
Sbjct: 269 KCGCMSDALQVFRTMPVRSTKSWNILIDGFVQNQRHKEALTVFQEMISTGLTPDAVTLAS 328
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGI 251
VLSACA+ DL+ V ++I+ +GI
Sbjct: 329 VLSACAQLGDLQQARDVHNYIKNHGI 354
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 86/172 (50%), Gaps = 11/172 (6%)
Query: 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
SA ++ C + A ++F +P + +WN LI + + ++ +F +++
Sbjct: 262 SAISMYAKCGC-----MSDALQVFRTMPVRSTKSWNILIDGFVQNQRHKEALTVFQEMI- 315
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLA 171
++ P+ TL V+ A A+ + + +H ++ +++NSLI+ YA CGD+
Sbjct: 316 STGLTPDAVTLASVLSACAQLGDLQQARDVHNYIKNHGIHCGTLLTNSLINTYAKCGDMV 375
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
A F + ++DVVSW +M+ G+V G F A E + EM+ V E+ +
Sbjct: 376 AANVAFQTMKQRDVVSWTTMVCGYVHGRQFTAAFEFFEEMKSAEVVASEMAL 427
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 29/159 (18%)
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TWN++I +SS+ ++ +F Q++ P+ T V+ A A VG
Sbjct: 433 TWNSMIGGFSSNGHGKEAVQLFNQMLKLGHPKPDGITFKAVLGACA-----HVG------ 481
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+++ L HFY++ F + D+ + ++ G E+A E +
Sbjct: 482 -----MVNEGLQHFYSMSS--------FTI--APDIEHYGCIVDLLSRAGLLEEAFEFIK 526
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
M +E P+ V +LSAC +++ + HI K
Sbjct: 527 NMPIE---PNPVIWGSLLSACRFHHEIDLARRIGQHITK 562
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 14/224 (6%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
LK+IHA++ T F + + K+ CA+S ++ YA +FD+IP+P+ + WNT+IR
Sbjct: 27 HLKQIHARIFLTGFNHNLILSGKIIMFCAVS--QNMNYALNVFDKIPKPDSFLWNTMIRG 84
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
+ +S + + F + + + P+ FT F++K AR +G+ +H FE+
Sbjct: 85 FGNSTTHSHNAIHFFKRM-QLAHRPDNFTFSFILKIIARLRFVNLGKQLHCSLFKFGFEN 143
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ NSLIH Y + D+ +A+ +F + + ++VSWNS+I V G + +AI+L+ +M
Sbjct: 144 HTYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSIIDCHVYCGKYNEAIDLFTKMV 203
Query: 213 VEN-----VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ ++PD T+VV LSAC L+FG V S + ++G+
Sbjct: 204 QQQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHSFV-RDGV 246
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 14/204 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY- 98
K++H + F Y + L + +E A ++F+++ QPNL +WN++I +
Sbjct: 130 KQLHCSLFKFGFENHTYVRNSLIHMYGM--LKDIEIAHQLFEEMYQPNLVSWNSIIDCHV 187
Query: 99 --SSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHGM------ 149
+E I F +Q +N P+ TL + A G+ +H
Sbjct: 188 YCGKYNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHSFVRDGVN 247
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F + + + N+L+ YA CG + AY F + +K+VVSWN MI GF G E+A+ L+
Sbjct: 248 SFGESISVFNALVDMYAKCGAVEEAYETFSNMKRKNVVSWNVMILGFASHGNGEEALALF 307
Query: 209 REMEVENV-KPDEVTMVVVLSACA 231
M ENV +PDE+T + VL AC+
Sbjct: 308 TRMLHENVERPDEITFLCVLCACS 331
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++E A + F + + N+ +WN +I ++S ++ +F ++++ + P+E T V
Sbjct: 267 GAVEEAYETFSNMKRKNVVSWNVMILGFASHGNGEEALALFTRMLHENVERPDEITFLCV 326
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + G+ + D I ++ H+ C+ ++G+
Sbjct: 327 LCACSHGGLVDEGRRYFEIMNRDYNIKPTIKHY----------GCMVDLLGR-------- 368
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G F +A EL + M VE + + +L+AC ++E G V H+
Sbjct: 369 -------AGLFVEAYELIKSMPVE---CNAIIWRTLLAACRNYGNVELGEKVRKHL 414
>gi|242036089|ref|XP_002465439.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
gi|241919293|gb|EER92437.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
Length = 596
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 21/231 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++HA++++ + ASKL + S L+ AR++FD IP+P+++ WN ++ A S
Sbjct: 34 RQLHARLIALSVTPSNFLASKLIS--LYSRTGRLDDARRVFDAIPRPSVFAWNAILIALS 91
Query: 100 -SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR---------PVQFRVGQAIHGM 149
S +P + F S P+E TL ++K+ A +F A+
Sbjct: 92 LHSPDPSAAVRFFAA----SGISPDEITLSALLKSLAESGPRLSALVAAEFHA-VAVQRG 146
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F DDL +SN LI YA GD A VF + ++DVVSWNS+IS + G++ + +EL++
Sbjct: 147 FGDDLFVSNGLITAYANAGDSRSARAVFDKMPQRDVVSWNSLISAYARAGWYRECLELFQ 206
Query: 210 EME----VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
E+ V+P+ VT+ +L ACA+ + +++G+ V +NG+ MD+
Sbjct: 207 ELASVHGAGGVRPNSVTVASILHACAQLKAIDYGVRVHRFAAENGLDMDVA 257
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
HA + F D + ++ L T A + AR +FD++PQ ++ +WN+LI AY+ +
Sbjct: 139 HAVAVQRGFGDDLFVSNGLIT--AYANAGDSRSARAVFDKMPQRDVVSWNSLISAYARAG 196
Query: 103 EPIQSFMIFLQLVY---NSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
+ +F +L PN T+ ++ A A+ G +H + D+
Sbjct: 197 WYRECLELFQELASVHGAGGVRPNSVTVASILHACAQLKAIDYGVRVHRFAAENGLDMDV 256
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ NS + FYA CG L A +F + KKD VS+++MI+G++ G +K +EL++ + +
Sbjct: 257 AVWNSTVGFYAKCGKLQYARELFERMPKKDAVSYSAMITGYMNHGHVDKGMELFQRSDAQ 316
Query: 215 NV 216
+
Sbjct: 317 GI 318
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 35/194 (18%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAY---SSSDEPIQSFM------------IFLQLVYN 117
L+YAR++F+++P+ + +++ +I Y D+ ++ F + LV N
Sbjct: 272 LQYARELFERMPKKDAVSYSAMITGYMNHGHVDKGMELFQRSDAQGISIWNAVIAGLVQN 331
Query: 118 ---------------SPYFPNEFTLPFVIKA-----AARPVQFRVGQAIHGMFEDDLVIS 157
S PN TL +I + V+ G AI ++ + +
Sbjct: 332 GRQSEVLGLLNEMIGSGILPNSATLSIIIPSVHLFSTLLGVKQAHGYAIRNNYDQSISVV 391
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
+LI Y+ G L + VF G + + W S+IS G +A+ L+ EM ++
Sbjct: 392 TALIDAYSKAGFLDGSLRVFKSTGDRSKIVWTSIISAVAAHGEAAEALCLFNEMANARIR 451
Query: 218 PDEVTMVVVLSACA 231
PD + VL+ACA
Sbjct: 452 PDTIAFTAVLTACA 465
>gi|357487485|ref|XP_003614030.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515365|gb|AES96988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 11/222 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKM---FDQIPQPNLYTWNTL 94
+L ++ AQ+ D + S+L +LS F +L +ARK+ F P P +WN L
Sbjct: 25 KLHQLQAQIHLNSLHNDTHILSQLVYFFSLSPFKNLSHARKLVFHFSNNPSP--ISWNIL 82
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----M 149
IR Y+SSD PI+S +F ++ N PN+ T PF+ K+ A + G+ +H
Sbjct: 83 IRGYASSDSPIESIWVFKKMRENGVK-PNKLTYPFIFKSCAMALVLCEGKQVHADLVKFG 141
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ D+ + N++I+FY C + A VF + + +VSWNS+++ VE + I +
Sbjct: 142 LDSDVYVCNNMINFYGCCKKIVYARKVFDEMCVRTIVSWNSVMTACVENVWLSDGIGYFF 201
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+M +PDE +MV++LS CA+ L G WV S + G+
Sbjct: 202 KMRDCAFEPDETSMVLLLSVCAELGYLSLGRWVHSQLILKGM 243
>gi|302786354|ref|XP_002974948.1| hypothetical protein SELMODRAFT_52548 [Selaginella moellendorffii]
gi|300157107|gb|EFJ23733.1| hypothetical protein SELMODRAFT_52548 [Selaginella moellendorffii]
Length = 495
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q R+H +L++ +P A+ + C S L AR+ FD+ ++ TW T+I A
Sbjct: 97 QATRLHDLLLASGIAVEPSVANAILNAC--SKNGGLIAARRAFDRTLHRDIITWTTMIDA 154
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI--HGMFEDDLV 155
YS S +F +F ++++ PN+ T ++K + + R AI +E + +
Sbjct: 155 YSESGISSAAFQLFRLMLHDGHLVPNKITFVALLKGCSILPEARFLDAIIRESGYESNSI 214
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
I+N+LI ++ CG A F + KD + W MI+ + E G ++A+ LY M+ E
Sbjct: 215 IANNLIKAFSRCGSPDHARAAFERVISKDTILWTGMITAYAEHGLHDEALRLYALMQSEG 274
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ PD +T +L CA+ + G V + I K+GI++D E
Sbjct: 275 LAPDRITYTTILDVCARSTAIAEGKLVHAAIAKSGIELDTALE 317
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A S S ++AR F+++ + W +I AY+ ++ ++ L+ + P+
Sbjct: 222 AFSRCGSPDHARAAFERVISKDTILWTGMITAYAEHGLHDEALRLY-ALMQSEGLAPDRI 280
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T ++ AR G+ +H E D + NS+++ Y CG +A F I
Sbjct: 281 TYTTILDVCARSTAIAEGKLVHAAIAKSGIELDTALENSILNMYGKCGKMAETRDFFASI 340
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
D++SW+ IS G +A+EL+REM V+ D V +LSAC
Sbjct: 341 RHPDLLSWSIYISSHAHHGHGRRALELFREMVHAGVEADYSAFVNILSAC 390
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Query: 80 FDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139
F +PQ N +WN ++ A++ + + ++ F ++ + + PN T ++ + +
Sbjct: 36 FRAMPQRNTISWNAIVTAFAENGDREEAMDSFHRMQHEG-FLPNRVTFLAMLGSLSGKNA 94
Query: 140 FRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
+H + + ++N++++ + G L A F +D+++W +MI
Sbjct: 95 LIQATRLHDLLLASGIAVEPSVANAILNACSKNGGLIAARRAFDRTLHRDIITWTTMIDA 154
Query: 195 FVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACA 231
+ E G A +L+R M + ++ P+++T V +L C+
Sbjct: 155 YSESGISSAAFQLFRLMLHDGHLVPNKITFVALLKGCS 192
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 50/87 (57%)
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ ++ + N++I Y CG +A A F + +++ +SWN++++ F E G E+A++ +
Sbjct: 9 LDREIFVGNTIITMYRKCGAMADAIDYFRAMPQRNTISWNAIVTAFAENGDREEAMDSFH 68
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDL 236
M+ E P+ VT + +L + + K L
Sbjct: 69 RMQHEGFLPNRVTFLAMLGSLSGKNAL 95
>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
Length = 700
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 10/222 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS- 100
+H +L F + +S L + S ++ AR +FD +P+ + +WN++I YS
Sbjct: 63 LHCLILKKGFSNQLFVSSGLIS--MYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQR 120
Query: 101 --SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
++E F + N ++FTL V+KA R+G+ +HG F+ D
Sbjct: 121 GLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSD 180
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L +S S ++ Y CG L MA F I KD+V+WN+MI+G+ + + E+AIEL+ +ME+
Sbjct: 181 LFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMEL 240
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E KP++ T VL A D G + + K G MD+
Sbjct: 241 EGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDV 282
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 10/223 (4%)
Query: 40 KRIHAQMLSTDFFFDPY-SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
K +H + F D + S S ++ C L+ A FDQI ++ WNT+I Y
Sbjct: 166 KCVHGYAVKIGFDSDLFVSGSTVYMYCKCGI---LDMAGLAFDQIENKDIVAWNTMITGY 222
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----D 153
+ + ++ +F Q+ + PN+ T V+KA+ VG+ H D
Sbjct: 223 AQNCYEEEAIELFYQMELEG-FKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMD 281
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ ++ +L+ Y+ D+ F + K+++VS+N++I+G+ G +E+A+ +Y +++
Sbjct: 282 VFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQS 341
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
E ++PD T V + S+C+ + G V H K G+ D++
Sbjct: 342 EGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVS 384
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A + F+ I +PN W +I ++ + E ++ M F ++ +EF+ VIKA +
Sbjct: 402 ALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDK-TDEFSSSSVIKAVS 460
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ +H + + + +++I Y+ CG + A VF ++ +K+VVSWNS
Sbjct: 461 SWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNS 520
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
MI+G+ + GF ++A+ L++EM + P VT V +L AC+ +E G
Sbjct: 521 MITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEG 569
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 13/243 (5%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PN TT + +++ + HA++L D + A+ L S F +E
Sbjct: 245 PNDTTFCCV---LKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVD--MYSKFYDIE 299
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
+ F ++ + NL ++N LI YS + ++ ++ QL + P+ FT + +
Sbjct: 300 DVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQL-QSEGMEPDSFTFVGLFSSC 358
Query: 135 ARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ G +H G+ + D+ + NS+++FY+ CG A F I + + V W
Sbjct: 359 SVSSTVAEGAQVHVHSVKFGL-DSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCW 417
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+ISGF + G EKA+ + +M K DE + V+ A + +E G + +H+ K
Sbjct: 418 AGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMK 477
Query: 249 NGI 251
+G+
Sbjct: 478 SGL 480
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/149 (18%), Positives = 69/149 (46%), Gaps = 19/149 (12%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q + +HA ++ + Y S +++ C + +E A+K+F +P+ N+ +WN+
Sbjct: 466 EQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGM-----VEDAQKVFSVMPEKNVVSWNS 520
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
+I Y+ + ++ ++F ++ +S P T ++ A + G+ E+
Sbjct: 521 MITGYAQNGFCKEALLLFQEMT-SSGILPTAVTFVGILFACSHA----------GLVEEG 569
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
N ++H Y + + C+ ++G+
Sbjct: 570 RNFYNLMVHNYGIPPSMEHCTCMVDLLGR 598
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 124/260 (47%), Gaps = 46/260 (17%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T+ Q+ +IHAQ L + KL S++YAR + DQ P P ++WN+
Sbjct: 10 TSLTQIHQIHAQTLIHGLPLQTHLIPKLID------LHSIDYARFVLDQTPSPTDFSWNS 63
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
LIRAY+ P S ++L+++ +S P+ FT PFV+KA + G+ IH
Sbjct: 64 LIRAYTVHGSPQNSLFLYLKMLRSSTK-PSNFTFPFVLKACSTLGSVLEGEQIHTHVLRL 122
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F DL + NSLI Y C L A + +G +D VSWNS+ISG+V+ G EKA +L+
Sbjct: 123 GFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLF 182
Query: 209 REM----------------------------------EVENVKPDEVTMVVVLSACAKKR 234
EM + V+P+ TMV +LSAC+
Sbjct: 183 EEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLC 242
Query: 235 DLEFGIWVSSHIEKNGIKMD 254
+ E G ++S I+ N I ++
Sbjct: 243 NYEVGRFLSVFIDVNKIPLN 262
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 116/196 (59%), Gaps = 9/196 (4%)
Query: 70 FSSLEYARKMFDQIP-QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTL 127
+ +E AR +F+++P + N+ W +I Y + ++ +F Q++ ++ PN T+
Sbjct: 172 WGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATM 231
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED------DLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
++ A + + VG+ + +F D + ++ +LI Y+ CGD+ A+ +F +
Sbjct: 232 VCLLSACSTLCNYEVGRFL-SVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVS 290
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
K++ SWN++I+G V+GG E+AI+LYR M+ ++VKP+E+T+V VLSACA LE G
Sbjct: 291 CKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGRE 350
Query: 242 VSSHIEKNGIKMDLTF 257
V ++ +NG+ +++
Sbjct: 351 VHLYLGRNGLDLNVIL 366
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 7/190 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +E A ++FD + NL +WN +I ++ ++ + S PNE TL
Sbjct: 274 SKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVK-PNEITL 332
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A +G+ +H + +++++ +L+ YA CG + A +FV +
Sbjct: 333 VNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSE 392
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG-IW 241
KDV WN+MI G G ++ ++ +M V+P++VT + VLSAC +E G +
Sbjct: 393 KDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQ 452
Query: 242 VSSHIEKNGI 251
SS +K+G+
Sbjct: 453 FSSMADKHGL 462
>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
Length = 736
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 10/229 (4%)
Query: 37 KQLKRIHAQMLSTDFF-FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
KQ + +HA +L T FD + L T A LE ARK FD++ + L TWN LI
Sbjct: 75 KQGQLLHAMILETRLLEFDIILGTALITMYA--RCRDLELARKTFDEMGKKTLVTWNALI 132
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSP--YFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
YS + + + I+ +V SP P+ T + A G+ I
Sbjct: 133 AGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVAS 192
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ D ++ N+LI+ Y+ CG L A VF + +DV++WN+MISG+ + G +A+EL+
Sbjct: 193 GYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELF 252
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ M + KP+ VT + +L+AC DLE G + + ++G + DL
Sbjct: 253 QRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVI 301
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q + I A+ +++ + D + L S SLE ARK+FD++ ++ WNT+I
Sbjct: 181 QGREIEARTVASGYASDSIVQNALIN--MYSKCGSLESARKVFDRLKNRDVIAWNTMISG 238
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFED 152
Y+ Q+ +F ++ N P PN T ++ A G+AIH +E
Sbjct: 239 YAKQGAATQALELFQRMGPNDPK-PNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYES 297
Query: 153 DLVISNSLIHFYAVCGD-LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DLVI N L++ Y C L A VF + +DV++WN +I +V+ G + A++++++M
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
++ENV P+E+T+ VLSACA G V + I K D+ E
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLE 404
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 113/216 (52%), Gaps = 13/216 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + +Q + IH ++ + D + ++T C+ SSLE AR++F+++ ++
Sbjct: 277 LEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCS----SSLEEARQVFERMRTRDVI 332
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-- 147
TWN LI AY + + IF Q+ + PNE TL V+ A A R G+A+H
Sbjct: 333 TWNILIVAYVQYGQAKDALDIFKQMQLEN-VAPNEITLSNVLSACAVLGAKRQGKAVHAL 391
Query: 148 ---GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
G + D+V+ NSL++ Y CG L VF I K +VSW+++I+ + + G
Sbjct: 392 IASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTG 451
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+E + E+ E + D+VTMV LSAC+ L+ G+
Sbjct: 452 LEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGV 487
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 10/193 (5%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+ A +F I PN +W ++ A++ + ++ + ++V P+
Sbjct: 6 GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEG-LRPDGAMFVVA 64
Query: 131 IKAAARPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
I + + GQ +H M E D+++ +LI YA C DL +A F +GKK
Sbjct: 65 IGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREM---EVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+V+WN++I+G+ G A+++Y++M E +KPD +T L AC D+ G
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGRE 184
Query: 242 VSSHIEKNGIKMD 254
+ + +G D
Sbjct: 185 IEARTVASGYASD 197
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
Y CG +A A VF I + VSW +++ F G + +A+ YR M +E ++PD
Sbjct: 1 MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60
Query: 223 MVVVLSACAKKRDLEFG 239
VV + C+ +DL+ G
Sbjct: 61 FVVAIGVCSSSKDLKQG 77
>gi|297800206|ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 616
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 12/226 (5%)
Query: 37 KQLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+ +KRIHA L FD Y + L + C L YARK+FD +P N TW
Sbjct: 99 RLIKRIHAMALKC---FDDQVIYFGNNLISSCV--RLGDLVYARKVFDSMPDRNTVTWTA 153
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG----M 149
+I Y ++F +F V + F NE ++ +R +F +G+ +HG +
Sbjct: 154 MIDGYLKFGLEDEAFSLFEDYVKHGIRFTNERMFVCLLNLCSRRSEFELGRQVHGNMVKV 213
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+L++ +SL++FYA CG+L A F M+ +KDV+SW ++IS G KAI ++
Sbjct: 214 GVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGHGNKAIFMFI 273
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M P+E T+ +L AC++++ + FG V S + K IK D+
Sbjct: 274 GMLNHGFLPNEFTVCSILKACSEEKAIRFGRQVHSLVVKRMIKTDV 319
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 100/188 (53%), Gaps = 6/188 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L A + FD + + ++ +W +I A S ++ +F+ ++ N + PNEFT+ ++K
Sbjct: 234 LTSALRAFDMMEEKDVISWTAVISACSRKGHGNKAIFMFIGML-NHGFLPNEFTVCSILK 292
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + R G+ +H M + D+ + SL+ YA CG+++ VF + ++ V+
Sbjct: 293 ACSEEKAIRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVT 352
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W S+I+ GF E+AI L+R M+ ++ + +T+V +L AC L G + + I
Sbjct: 353 WTSIIAAHAREGFGEEAISLFRVMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQII 412
Query: 248 KNGIKMDL 255
KN I+ ++
Sbjct: 413 KNSIEKNV 420
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 14/200 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +HAQ++ + Y S L + C S A + Q+P ++ +W +I
Sbjct: 405 KELHAQIIKNSIEKNVYIGSTLVWLYCKCGES-----RDAFNVLQQLPSRDVVSWTAMIS 459
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
SS ++ + FL+ + PN FT +KA A +G++IH + + + +
Sbjct: 460 GCSSLGHESEA-LDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHAL 518
Query: 157 SN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
SN +LIH YA CG ++ A+ VF + +K++VSW +MI G+ GF +A++L M
Sbjct: 519 SNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRM 578
Query: 212 EVENVKPDEVTMVVVLSACA 231
E E + D+ +LS C
Sbjct: 579 EAEGFEVDDYIFATILSTCG 598
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 16/219 (7%)
Query: 40 KRIHA----QMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+++H+ +M+ TD F S ++ C + RK+FD + N TW ++I
Sbjct: 304 RQVHSLVVKRMIKTDVFVGT-SLMDMYAKCG-----EISDCRKVFDGMSNRNTVTWTSII 357
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----- 150
A++ ++ +F +++ N T+ +++A +G+ +H
Sbjct: 358 AAHAREGFGEEAISLF-RVMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSI 416
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E ++ I ++L+ Y CG+ A+ V + +DVVSW +MISG G +A++ +E
Sbjct: 417 EKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKE 476
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
M E V+P+ T L ACA L G + S +KN
Sbjct: 477 MIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKN 515
>gi|225459405|ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Vitis vinifera]
Length = 595
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 6/196 (3%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C + L A FDQ+P+ ++ W T+I A S ++ +F Q+++N+ PNE
Sbjct: 206 CFYAQCGDLSGAFHAFDQMPERDVVCWTTMITACSQQGRGTEALSMFSQMMFNTSS-PNE 264
Query: 125 FTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
FT+ V+KA G+ +HG MF++D+ I SL+ YA CG++ + VF
Sbjct: 265 FTVCSVLKACGEEKALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDG 324
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ K++ V+W S+I+G+ G E+AI L+R M+ + + +T+V +L AC R+L G
Sbjct: 325 MKKRNTVTWTSIIAGYARNGQGEEAISLFRVMKRRKIFANNLTVVSILRACGSTRNLLMG 384
Query: 240 IWVSSHIEKNGIKMDL 255
V + I KN ++ ++
Sbjct: 385 KEVHAQIMKNSMQSNI 400
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 7/223 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++++R+HA + Y + L + A S F L ARK+FD++P+ N+ +W ++
Sbjct: 80 REVRRVHAVVFKCLDNSVTYVNNNLIS--AYSRFGKLVEARKVFDKMPERNVVSWTAVVN 137
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD--- 153
YS ++ +F + N N T V+ ++ + F +G+ IH D
Sbjct: 138 GYSRYGFDDEALRLFDDCIENGVR-ANGKTFVCVLNLCSKRLDFELGRQIHACIVKDNWR 196
Query: 154 -LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
L++ ++L+ FYA CGDL+ A+ F + ++DVV W +MI+ + G +A+ ++ +M
Sbjct: 197 NLIVDSALVCFYAQCGDLSGAFHAFDQMPERDVVCWTTMITACSQQGRGTEALSMFSQMM 256
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
P+E T+ VL AC +++ LEFG + I K K D+
Sbjct: 257 FNTSSPNEFTVCSVLKACGEEKALEFGKQLHGAIIKKMFKEDV 299
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 19/214 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +HAQ++ + Y S L + C F+S K+ +P ++ +W +I
Sbjct: 385 KEVHAQIMKNSMQSNIYIGSTLVWFYCKCEEHPFAS-----KVLQNMPLRDVVSWTAIIS 439
Query: 97 AYSS-SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV 155
Y+S EP + FL+ + PN FT +KA A G+ IH L
Sbjct: 440 GYTSLGHEP--EALEFLKEMLEEGVEPNPFTYSSALKACAHLEAILQGKLIHSSVNKTLA 497
Query: 156 ISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+SN +LI+ YA CG ++ A VF + ++++VSW +MI G+ G +A++L
Sbjct: 498 LSNVFVGSALINMYAKCGYVSEAIQVFDSMPQRNLVSWKAMIVGYARNGLCGEALKLMYR 557
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
M+ E ++ D+ + VLSAC D+E+ + SS
Sbjct: 558 MQAEGIEVDDYILTTVLSACG---DVEWNMESSS 588
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 103/217 (47%), Gaps = 14/217 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++H ++ F D + + L + C + +RK+FD + + N TW ++I
Sbjct: 284 KQLHGAIIKKMFKEDVFIGTSLVGMYAKCG-----EILDSRKVFDGMKKRNTVTWTSIIA 338
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y+ + + ++ +F +++ F N T+ +++A +G+ +H +
Sbjct: 339 GYARNGQGEEAISLF-RVMKRRKIFANNLTVVSILRACGSTRNLLMGKEVHAQIMKNSMQ 397
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ I ++L+ FY C + A V + +DVVSW ++ISG+ G +A+E +EM
Sbjct: 398 SNIYIGSTLVWFYCKCEEHPFASKVLQNMPLRDVVSWTAIISGYTSLGHEPEALEFLKEM 457
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
E V+P+ T L ACA + G + S + K
Sbjct: 458 LEEGVEPNPFTYSSALKACAHLEAILQGKLIHSSVNK 494
>gi|224141397|ref|XP_002324059.1| predicted protein [Populus trichocarpa]
gi|222867061|gb|EEF04192.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 15/227 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF----DQIPQPNLYTWN 92
K + +IHAQ+L + D ++L C+LS L YA + D +P WN
Sbjct: 34 KHVSQIHAQILVSGLQQDTNLLTELIRFCSLSPSKHLSYAHSLLYNSLDSLP-----PWN 88
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---- 148
LIR Y+S D P + +F ++ PN FT PFV+KA A + G+ +H
Sbjct: 89 FLIRGYASGDAPKNAIRVFHRM-RKEGVGPNNFTFPFVLKACATCLALEEGKQVHADIFK 147
Query: 149 -MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ D+ ++N+L+H Y C + A VF + + +VSWNS+I+ V+ + AI
Sbjct: 148 FGLDCDVYVNNNLVHLYGSCKRIWDACKVFDEMPVRSIVSWNSVITACVQNLWLGDAIWN 207
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ +M+ +P+E TMV++LS CA+ +L G W+ S + + G+ ++
Sbjct: 208 FVKMKDFGFEPNETTMVIMLSLCAQIGNLSLGRWIHSQVIERGMTLN 254
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 9/198 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++HA + D Y + L + + A K+FD++P ++ +WN++I A
Sbjct: 139 KQVHADIFKFGLDCDVYVNNNLVH--LYGSCKRIWDACKVFDEMPVRSIVSWNSVITACV 196
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
+ + F+++ + + PNE T+ ++ A+ +G+ IH + +
Sbjct: 197 QNLWLGDAIWNFVKM-KDFGFEPNETTMVIMLSLCAQIGNLSLGRWIHSQVIERGMTLNC 255
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EV 213
+ +L+ YA GDL A VF + KK+V +W++MI G + GF ++ +EL+ +M E
Sbjct: 256 QLGTALVDMYAKSGDLGYAKLVFDRMEKKNVWTWSAMILGLAQHGFGKEGLELFLKMKES 315
Query: 214 ENVKPDEVTMVVVLSACA 231
++ P+ VT + VL AC+
Sbjct: 316 VSICPNYVTFLGVLCACS 333
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 116/197 (58%), Gaps = 7/197 (3%)
Query: 59 SKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117
+KL C S T SS+ YAR +F+ + +P++ +N++ R YS P++ F +F++++ +
Sbjct: 64 AKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILED 123
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAM 172
P+ +T P ++KA A G+ +H + +D++ + +LI+ Y C D+
Sbjct: 124 G-ILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDS 182
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
A CVF I + VV +N+MI+G+ +A+ L+REM+ + +KP+E+T++ VLS+CA
Sbjct: 183 ARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCAL 242
Query: 233 KRDLEFGIWVSSHIEKN 249
L+ G W+ + +K+
Sbjct: 243 LGSLDLGKWIHKYAKKH 259
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 103/198 (52%), Gaps = 14/198 (7%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++T C ++ AR +FD+I +P + +N +I Y+ + P ++ +F ++ Y
Sbjct: 173 MYTEC-----EDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREM--QGKY 225
Query: 121 F-PNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAY 174
PNE TL V+ + A +G+ IH F + ++ +LI +A CG L A
Sbjct: 226 LKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAV 285
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
+F + KD +W++MI + G EK++ ++ M ENV+PDE+T + +L+AC+
Sbjct: 286 SIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTG 345
Query: 235 DLEFG-IWVSSHIEKNGI 251
+E G + S + K GI
Sbjct: 346 RVEEGRKYFSQMVSKFGI 363
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 8/228 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L K+ KR+H +L F + + L A F +E A +FD++ +P++ +WN
Sbjct: 208 LGKVKECKRVHGYVLKLGFGSNTAVVNSLIA--AYFKFGGVESAHNLFDELSEPDVVSWN 265
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---- 148
++I + IF+Q++ + TL V+ A A +G+A+HG
Sbjct: 266 SMINGCVVNGFSGNGLEIFIQMLILGVEV-DLTTLVSVLVACANIGNLSLGRALHGFGVK 324
Query: 149 -MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F +++V SN+L+ Y+ CG+L A VFV +G +VSW S+I+ +V G + AI L
Sbjct: 325 ACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGL 384
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ EM+ + V+PD T+ ++ ACA L+ G V S++ KNG+ +L
Sbjct: 385 FDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNL 432
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 97/174 (55%), Gaps = 7/174 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+E AR +F +IP ++ +WNT+I YS + P ++ +FL + + P++ T+ V
Sbjct: 446 GSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM--QKQFKPDDITMACV 503
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A G+ IHG + DL ++ +L+ YA CG L +A +F MI KKD+
Sbjct: 504 LPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDL 563
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+SW MI+G+ GF +AI + EM + ++PDE + +L+AC+ L G
Sbjct: 564 ISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEG 617
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 101/194 (52%), Gaps = 9/194 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +L A ++F ++ + +W ++I AY + +F ++ + P+ +T+
Sbjct: 342 SKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEM-QSKGVRPDIYTV 400
Query: 128 PFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
++ A A G+ +H GM +L ++N+LI+ YA CG + A VF I
Sbjct: 401 TSIVHACACSSSLDKGRDVHSYVIKNGM-GSNLPVTNALINMYAKCGSVEEARLVFSKIP 459
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
KD+VSWN+MI G+ + +A+EL+ +M+ + KPD++TM VL ACA L+ G
Sbjct: 460 VKDIVSWNTMIGGYSQNLLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGRE 518
Query: 242 VSSHIEKNGIKMDL 255
+ HI + G DL
Sbjct: 519 IHGHILRRGYFSDL 532
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 14/208 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KR+H+ ++S D +KL + C L RK+FD+I ++ WN L+
Sbjct: 114 KRVHSVIISNGISVDEALGAKLVFMYVNCG-----DLVQGRKIFDKIMNDKVFLWNLLMS 168
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y+ +S +F ++ N +T V+K A + + + +HG F
Sbjct: 169 EYAKIGNFRESVSLFKKM-QKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFG 227
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + NSLI Y G + A+ +F + + DVVSWNSMI+G V GF +E++ +M
Sbjct: 228 SNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQM 287
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ V+ D T+V VL ACA +L G
Sbjct: 288 LILGVEVDLTTLVSVLVACANIGNLSLG 315
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 43/213 (20%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ IH +L +F D + A L + C L L A+ +FD IP+ +L +W +I
Sbjct: 517 REIHGHILRRGYFSDLHVACALVDMYAKCGL-----LVLAQLLFDMIPKKDLISWTVMIA 571
Query: 97 AYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
Y +E I +F + + P+E + ++ A + G ++
Sbjct: 572 GYGMHGFGNEAISTF----NEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNE 627
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ L H+ V LA G KA Y+ +E
Sbjct: 628 CGVEPKLEHYACVVDLLARM-------------------------GNLSKA---YKFIES 659
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+KPD V+LS C D++ V+ HI
Sbjct: 660 MPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHI 692
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 130 VIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V++ A G+ +H + D + L+ Y CGDL +F I
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 159
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
V WN ++S + + G F +++ L+++M+ V + T VL
Sbjct: 160 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKC 204
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
DP S L ALS + L+ A ++F QIP+P L WN +IR +S +++PI++ +
Sbjct: 728 DPISIFNLLKSYALSPTNILK-ANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNY-N 785
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRV----GQAIHGMFEDDLVISNSLIHFYAVCGD 169
L+Y+ F N T PF++KA AR + + F+ DL +SN+LIH YA +
Sbjct: 786 LMYSQALFGNNLTYPFLLKACARISNVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFCE 845
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L A VF + ++D+VSWNS+I G+ + + + ++ EM + +VK D VTMV V+ A
Sbjct: 846 LGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLA 905
Query: 230 CAKKRDLEFGIW-----VSSHIEKNGIKMDL 255
C G W + +IE+N +++D+
Sbjct: 906 CTV-----LGEWGVVDAMIEYIEENKVEVDV 931
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 6/175 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+L ARK+FD +P ++ +W ++I +YS + + ++ +F +++ + P+E T+ V
Sbjct: 976 GNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMV-TKVKPDEITVASV 1034
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A VG+A+H D+ + N+LI Y CG + VF +GK+D
Sbjct: 1035 LSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDS 1094
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
VSW S+I+G G + A+ L+ M E V+P T V VL ACA ++ G+
Sbjct: 1095 VSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGL 1149
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 39/250 (15%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+HA++L F D + ++ L + F L +ARK+FD++ + +L +WN+LI Y
Sbjct: 817 VHARVLKLGFDSDLFVSNALIH--GYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRC 874
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI--------------- 146
+ ++F ++ + + T+ V+ A ++ V A+
Sbjct: 875 RRYSEVLVVFEEMRM-ADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYL 933
Query: 147 ---------------------HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
M + ++V N++I Y G+L A +F + +DV
Sbjct: 934 GNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDV 993
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+SW SMIS + + G F KA+ L++EM V VKPDE+T+ VLSACA L+ G V +
Sbjct: 994 ISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEY 1053
Query: 246 IEKNGIKMDL 255
I K + D+
Sbjct: 1054 IRKYDVNADI 1063
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 123/258 (47%), Gaps = 20/258 (7%)
Query: 5 STPVISIPRHPNPTTLTVNNGHQRHPHF--LTNQKQLKRIHAQMLSTDFFFDPYSASKLF 62
+TP +P P L PH T+ + L ++HA + + P ++L
Sbjct: 8 ATPTPLLPAKPKGPLL---------PHLPHCTSLRALAQLHAAAVKSGLGAHPALVTRLL 58
Query: 63 TPCAL--STFSSLEYARKMFDQIPQPNLYTW-NTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
T C + + L YAR++FD+IP P W NTL+R Y+ S + L +
Sbjct: 59 TLCTKQGAAPAHLAYARQVFDRIPTPGDVVWYNTLLRGYARSSDGAAEAARVLARMLEEG 118
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAY 174
P+ +T ++KA A G+ HG+ D + +LI+ YA CGD A
Sbjct: 119 VAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSAR 178
Query: 175 CVFVMIGKKD-VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+F + D VVS+N+MI+ V +A+ L+REM+ + +KP VT+ VLSACA
Sbjct: 179 AMFGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALL 238
Query: 234 RDLEFGIWVSSHIEKNGI 251
LE G W+ ++ K G+
Sbjct: 239 GALELGRWIHEYVRKAGL 256
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 7/182 (3%)
Query: 76 ARKMFDQIPQPN-LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR MF ++P + + ++N +I A S P ++ ++F ++ P T+ V+ A
Sbjct: 177 ARAMFGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKG-LKPTSVTVTSVLSAC 235
Query: 135 ARPVQFRVGQAIHGMFE----DDLV-ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A +G+ IH D LV ++ +LI Y CG L A VF + +D +W+
Sbjct: 236 ALLGALELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESRDRQAWS 295
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
MI + + +AI L+ EM+ + ++PD VT + VL AC+ + G+ + +
Sbjct: 296 VMIVAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSMREY 355
Query: 250 GI 251
GI
Sbjct: 356 GI 357
>gi|296085625|emb|CBI29414.3| unnamed protein product [Vitis vinifera]
Length = 350
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 117/222 (52%), Gaps = 8/222 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+ +IHA M+ T F S +KL A +E AR++FD+ PQ + WN +I AY
Sbjct: 23 IAKIHALMILTGIFGHGNSNAKLIQSYA--RLGHIESARQVFDKSPQCGVDAWNAMIIAY 80
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-----QAIHGMFEDD 153
S ++ ++ ++ + P+ T V+KA R + R G QA+ + DD
Sbjct: 81 SRRGAMFEALSLYHRMA-SEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDD 139
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + ++++ YA CG + A VF +G++D+V W +MI+G + G +A+++YR+M
Sbjct: 140 VFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHK 199
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ V+ D V M+ ++ AC + G+ + ++ + I MD+
Sbjct: 200 KRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDV 241
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 41/256 (16%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTLI 95
+L+++HAQ++ T+ +++ CA + S YA+++F+ + + P + WN+ +
Sbjct: 43 ELRQVHAQIIKTNAPLSILPLTRVGLVCAFT--PSFHYAQQIFECVEKQKPETFVWNSCL 100
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
+A + D PI + M+F +L P+ FT V++A + G+ +HG+ F
Sbjct: 101 KALAEGDSPIDAIMLFYRL-RQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGF 159
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN--------------------- 189
+L + N ++H YA CG++ A +F + ++DVV+WN
Sbjct: 160 RSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSR 219
Query: 190 ----------SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
SMI+G+V+ G ++AI L+ +ME VK +EVT+V VL+ACA L+ G
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLG 279
Query: 240 IWVSSHIEKNGIKMDL 255
+ + + ++G K ++
Sbjct: 280 MRIHEYSNRHGFKRNV 295
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 6/163 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A +F ++P+ N+ +W ++I Y + ++ +F ++ + NE T+ V+ A
Sbjct: 211 EGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKM-EEAGVKCNEVTVVAVLAA 269
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A +G IH F+ ++ ISN+LI Y CG L A VF + ++ VVSW
Sbjct: 270 CADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSW 329
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++MI G G E+A+ L+ +M ++P+ VT + +L AC+
Sbjct: 330 SAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACS 372
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 112/209 (53%), Gaps = 10/209 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ K++HAQ+L + + + AS L CALS + S++YA +F QI QP + +NT+IR
Sbjct: 2 EEFKQVHAQVLKWE---NSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIR 58
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + + ++ +++ N FT P + KA A G IHG E
Sbjct: 59 GYVNVMNMENALFLYYEMLERGVESDN-FTYPALFKACASLRSIEEGMQIHGYIFKRGLE 117
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL + NSLI+ Y CG + ++ VF + ++DV SW+++I+ G + + + ++ EM
Sbjct: 118 GDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEM 177
Query: 212 EVE-NVKPDEVTMVVVLSACAKKRDLEFG 239
E + +P+E +V VLSAC L+ G
Sbjct: 178 SREGSCRPEESILVSVLSACTHLGALDLG 206
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 9/211 (4%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIP 84
+P L+ I M + F LF +L +E + +F+ +
Sbjct: 88 YPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMD 147
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ ++ +W+ +I A++S + +F ++ P E L V+ A +G+
Sbjct: 148 RRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGR 207
Query: 145 AIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
H + E ++++ SLI Y CG + +F + KK+ +S++ MI+G G
Sbjct: 208 CTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHG 267
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+A++++ +M E +KPD+V + VLSAC
Sbjct: 268 RGMEALQVFSDMLEEGLKPDDVVYLGVLSAC 298
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G + A +F I + +N+MI G+V E A+ LY EM V+ D T +
Sbjct: 33 GSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALF 92
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMDL 255
ACA R +E G+ + +I K G++ DL
Sbjct: 93 KACASLRSIEEGMQIHGYIFKRGLEGDL 120
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 129/253 (50%), Gaps = 37/253 (14%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+K+I + + + FDP++A ++ + CA+S + +A +F +P+ + WNT++RA
Sbjct: 28 HIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRA 87
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-----QAIHGMFED 152
++ EP ++ + + ++ + PN +T F+++A A+ G QA+ +E
Sbjct: 88 FTDKKEPATVLSLY-KYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEA 146
Query: 153 DLVISNSLIHFYAVC-------------------------------GDLAMAYCVFVMIG 181
+ N L+H YA C G + +A +F +
Sbjct: 147 YDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMP 206
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+K+ VSW++MI+G+ + G F +A+EL+ +M++ +P+ +V L+ACA L+ G W
Sbjct: 207 EKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRW 266
Query: 242 VSSHIEKNGIKMD 254
+ +++++N + +D
Sbjct: 267 IHAYVDRNRMVLD 279
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN---SPYFPNEFTLPFVIK 132
AR++FD++P+ N +W+ +I Y+ I F L+L + + + PN + +
Sbjct: 198 ARQLFDEMPEKNAVSWSAMITGYAQ----IGLFREALELFNDMQIAGFRPNHGAIVGALT 253
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G+ IH + D ++ +LI YA CG + A VF + +DV +
Sbjct: 254 ACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFA 313
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+ S+ISG G AIE++ M+ E V P+EVT + +LSAC++ +E G+ +
Sbjct: 314 FTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRI 368
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 37/211 (17%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNL 88
FL Q + IHA + D + L + C +E A ++FD++ ++
Sbjct: 257 FLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCG-----CVETACRVFDEMLDRDV 311
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+ + +LI ++ + +F ++ N PNE T ++ A +R G
Sbjct: 312 FAFTSLISGLANHGHSATAIEMFTRM-QNEGVCPNEVTFICLLSACSRV----------G 360
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ E+ L I S+ + Y + + C+ ++G+ G E A +
Sbjct: 361 LVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGR---------------AGMLEDAKRVV 405
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
REM +E PD + +L+AC D+E G
Sbjct: 406 REMPLE---PDSYVLGALLNACRVHGDVELG 433
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 23/240 (9%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N LK++HAQML+T F Y S L S F+S YA +F+ IP P L+ +NTL
Sbjct: 17 NLNTLKQVHAQMLTTGLSFQTYYLSHLLNTS--SKFAS-TYAFTIFNHIPNPTLFLYNTL 73
Query: 95 IRAYSSSDEPIQ-SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED- 152
I + + + I +F ++ ++ + PN FT P + KA A + G +H
Sbjct: 74 ISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPPLHAHVLKF 133
Query: 153 -----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF------- 200
D + NSL++FYA G L ++ +F I + D+ +WN+M++ + +
Sbjct: 134 LQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTS 193
Query: 201 FE------KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
FE +A+ L+ +M++ +KP+EVT+V ++SAC+ L G W ++ +N +K++
Sbjct: 194 FEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLN 253
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 21/208 (10%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS----------- 101
+DP+ + L A + L +R +FDQI +P+L TWNT++ AY+ S
Sbjct: 138 YDPFVQNSLLNFYA--KYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFE 195
Query: 102 --DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDL---- 154
D +++ +F + S PNE TL +I A + G HG + ++L
Sbjct: 196 DADMSLEALHLFCDMQL-SQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNR 254
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +L+ Y+ CG L +A +F + +D +N+MI GF G +A+ELYR M++E
Sbjct: 255 FVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLE 314
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWV 242
++ PD T+VV + AC+ +E G+ +
Sbjct: 315 DLVPDGATIVVTMFACSHGGLVEEGLEI 342
>gi|296085509|emb|CBI29241.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 111/198 (56%), Gaps = 19/198 (9%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK++HAQM+ T DP +A++L A+S L+YARK+F + +PN +++NTLIR
Sbjct: 25 QDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIR 84
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------ 150
A S S++P + ++F+++V + PN FT P V KA R + R G+ +HG+
Sbjct: 85 ALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLD 144
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFV----MIGKKDVVSWNSMISGFVEGGFFEKAIE 206
D+ V+SN ++ Y CG + A+ +F + G + + G A+E
Sbjct: 145 SDEFVVSN-VVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDG--------DAVE 195
Query: 207 LYREMEVENVKPDEVTMV 224
++REM++ V P+ VT+V
Sbjct: 196 VFREMQMAEVPPNYVTLV 213
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 129/253 (50%), Gaps = 37/253 (14%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+K+I + + + FDP++A ++ + CA+S + +A +F +P+ + WNT++RA
Sbjct: 3 HIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRA 62
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-----QAIHGMFED 152
++ EP ++ + + ++ + PN +T F+++A A+ G QA+ +E
Sbjct: 63 FTDKKEPATVLSLY-KYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEA 121
Query: 153 DLVISNSLIHFYAVC-------------------------------GDLAMAYCVFVMIG 181
+ N L+H YA C G + +A +F +
Sbjct: 122 YDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMP 181
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+K+ VSW++MI+G+ + G F +A+EL+ +M++ +P+ +V L+ACA L+ G W
Sbjct: 182 EKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRW 241
Query: 242 VSSHIEKNGIKMD 254
+ +++++N + +D
Sbjct: 242 IHAYVDRNRMVLD 254
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 12/173 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN---SPYFPNEFTLPFVIK 132
AR++FD++P+ N +W+ +I Y+ I F L+L + + + PN + +
Sbjct: 173 ARQLFDEMPEKNAVSWSAMITGYAQ----IGLFREALELFNDMQIAGFRPNHGAIVGALT 228
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G+ IH + D ++ +LI YA CG + A VF + +DV +
Sbjct: 229 ACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFA 288
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ S+ISG G AIE++ M+ E V P+EVT + +LSAC++ +E G+
Sbjct: 289 FTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGL 341
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 37/211 (17%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNL 88
FL Q + IHA + D + L + C +E A ++FD++ ++
Sbjct: 232 FLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCG-----CVETACRVFDEMLDRDV 286
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+ + +LI ++ + +F ++ N PNE T ++ A +R G
Sbjct: 287 FAFTSLISGLANHGHSATAIEMFTRM-QNEGVCPNEVTFICLLSACSRV----------G 335
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ E+ L I S+ + Y + + C+ ++G+ G E A +
Sbjct: 336 LVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGR---------------AGMLEDAKRVV 380
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
REM +E PD + +L+AC D+E G
Sbjct: 381 REMPLE---PDSYVLGALLNACRVHGDVELG 408
>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 566
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 15/225 (6%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q ++HAQ + + + + SKLFT A S L YAR + + P N Y +NT+IRA
Sbjct: 3 QALQLHAQFIKSQ---NQRNFSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIRA 59
Query: 98 YSSSDEP------IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
YS + P + F+ LQ N P P+ FT F +K+ R + + +HG
Sbjct: 60 YSHTSNPTHHFQALSLFIFMLQPHTNVPK-PDTFTYSFALKSCGRLKLTQQAKQLHGFIN 118
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F DL I N+LIH Y+ G+L +A VF + +DVVSW SMI+GFV +AI+
Sbjct: 119 KMGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQ 178
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
L++ M V +E T++ VL CA L G V +++ GI
Sbjct: 179 LFQRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGI 223
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 9/220 (4%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
P P T T + + Q Q K++H + F FD Y + L S L
Sbjct: 87 PKPDTFTYSFALKSCGRLKLTQ-QAKQLHGFINKMGFGFDLYIQNALIH--MYSEIGELV 143
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR++FD++ ++ +W ++I + + +++ +F Q + NE T+ V++
Sbjct: 144 IARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLF-QRMLEVGVDVNEATVISVLRGC 202
Query: 135 ARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A VG+ +HG+ ++ + + +LIH Y+ CG L A VF + +DV W
Sbjct: 203 ADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVWT 262
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
+MI G G ++AIEL+ EME NVKPDE T++VVLSA
Sbjct: 263 AMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSA 302
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 29/184 (15%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S LE AR++FD + +++ W +I + ++ +FL++ P+E T+
Sbjct: 238 SKCGCLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEM-ETCNVKPDERTI 296
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
V+ A R G MF +D+ S+ K ++
Sbjct: 297 MVVLSAYRNAGLVREGY----MFFNDVQKRYSM---------------------KPNIKH 331
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+ M+ +GG E+A + M + KPD V ++ AC D E + H+E
Sbjct: 332 FGCMVDLLAKGGCLEEAEDFINAMPM---KPDAVIWRTLIWACKVHADTERAERLMKHLE 388
Query: 248 KNGI 251
G+
Sbjct: 389 LQGM 392
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 7/226 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L +Q + +HA ++ + F D + + + L+ AR+MFD++P ++ TW
Sbjct: 100 LGKVEQGRIVHAHLVDS-HFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWT 158
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
LI +S ++ P + ++F Q++ + PN FTL ++KA+ G +H
Sbjct: 159 ALIAGFSQNNRPRDALLLFPQML-RLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLK 217
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
++ + + ++L+ YA CG + A F + K VSWN++ISG G E A+ L
Sbjct: 218 YGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHL 277
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
+M+ +N +P T VLSACA LE G WV +H+ K+G+K+
Sbjct: 278 LWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKL 323
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 97/188 (51%), Gaps = 6/188 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ A+ FD +P + +WN LI ++ E + + ++ + + P FT V+
Sbjct: 240 MDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKN-FQPTHFTYSSVLS 298
Query: 133 AAARPVQFRVGQAIHG-MFEDDL----VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G+ +H M + L I N+L+ YA G + A VF + K DVVS
Sbjct: 299 ACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVS 358
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN+M++G + G ++ ++ + +M ++P+E++ + VL+AC+ L+ G++ ++
Sbjct: 359 WNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK 418
Query: 248 KNGIKMDL 255
K ++ D+
Sbjct: 419 KYKVEPDV 426
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 89/211 (42%), Gaps = 40/211 (18%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q K +HA M+ + + + L A + S++ A+++FD++ +P++ +WNT++
Sbjct: 307 EQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKA--GSIDDAKRVFDRLVKPDVVSWNTMLT 364
Query: 97 A---YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
+ E + F L++ PNE + V+ A + H D+
Sbjct: 365 GCAQHGLGKETLDRFEQMLRIGIE----PNEISFLCVLTACS-----------HSGLLDE 409
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFV-MIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ L+ Y V D+ Y FV ++G+ G ++A REM
Sbjct: 410 GLYYFELMKKYKVEPDVPH-YVTFVDLLGRV---------------GLLDRAERFIREMP 453
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+E P +L AC +++E G++ +
Sbjct: 454 IE---PTAAVWGALLGACRMHKNMELGVYAA 481
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 134/291 (46%), Gaps = 53/291 (18%)
Query: 17 PTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSL 73
P LT+ N N K++K IH +L + Y ++L C+ S ++S
Sbjct: 13 PKNLTLKNTLSTLIEQCKNLKEIKIIHTHILKSPILHTRDQYYLFTRLLYFCSFSNYASF 72
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSS------SDEPIQSFMIFLQLVYNSPYFPNEFTL 127
YA +F I P L +N +IR+Y S+ ++ M++ Q++ N PN T
Sbjct: 73 NYANNVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYKQML-NKGIVPNNLTF 131
Query: 128 PFVIKAAARPVQF--RVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
PF++K +R +Q+ VG+ IH F +D+ + NSLI + G A VF +
Sbjct: 132 PFLVKGCSR-LQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEM 190
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN------------------------- 215
+DVVSWNSM+ G++ G E A+ L+R+M N
Sbjct: 191 FVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFH 250
Query: 216 ----------VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
VKPD++T+ VLSACA ++ G WV +++ KN I+ D+
Sbjct: 251 EMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVV 301
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 8/177 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP---YFPNEFTL 127
+E A +F ++ N+ TWN++I + +S IF ++ + S P++ T+
Sbjct: 209 GEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITI 268
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A G+ +H E D+VI +L++ Y CGD+ A +F + +
Sbjct: 269 ASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPE 328
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
KD +W +MIS F GF +KA + + EME VKP+ VT V +LSAC+ +E G
Sbjct: 329 KDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQG 385
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 116/227 (51%), Gaps = 14/227 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFS---SLEYARKMFDQIPQPNLYTWNTLIR 96
+ IH + + FD A+ C L+ ++ S+ AR++FD++ ++ +W +I
Sbjct: 264 REIHVEAMKARLLFDVNVAN-----CILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIG 318
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----E 151
Y+ +F IF Q + PN T V+ A + P + G+ +H E
Sbjct: 319 GYADCGHSEIAFEIF-QKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHE 377
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL + +L+ YA CG VF + +D+++WN+MI G EGG +E+A E+Y +M
Sbjct: 378 SDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQM 437
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ E + P+++T V++L+AC L +G + S + K+G D++ +
Sbjct: 438 QREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQ 484
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 118/223 (52%), Gaps = 8/223 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ IH++++ F FD + L + A S++ AR +F+++ + ++ +W +I +
Sbjct: 466 REIHSRVVKDGFMFDISVQNALISMYA--RCGSIKDARLLFNKMVRKDIISWTAMIGGLA 523
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
S ++ +F Q + + PN T ++ A + P G+ IH D
Sbjct: 524 KSGLGAEALAVF-QDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDA 582
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++N+L++ Y++CG + A VF + ++D+V++N+MI G+ ++A++L+ ++ E
Sbjct: 583 HVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 642
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+KPD+VT + +L+ACA LE+ + S + K+G D +
Sbjct: 643 GLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSL 685
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 108/205 (52%), Gaps = 8/205 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+RIH Q++ D + A+ L S S++ AR++FD++ Q ++ +N +I Y+
Sbjct: 567 RRIHQQVIEAGLATDAHVANTLVN--MYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYA 624
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ + ++ +F +L P++ T ++ A A + IH + + D
Sbjct: 625 AHNLGKEALKLFDRL-QEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDT 683
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+L+ YA CG + A VF + K++V+SWN++I G + G + ++L+ M++E
Sbjct: 684 SLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKME 743
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
+KPD VT V +LSAC+ LE G
Sbjct: 744 GIKPDIVTFVSLLSACSHAGLLEEG 768
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIG--KKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
N+LI+ Y CG + A V+ + ++ V SWN+M+ G+V+ G+ E+A++L REM+
Sbjct: 180 NALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHG 239
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ T + +LS+C LE G + H+E +K L F+
Sbjct: 240 LALGRATTMRLLSSCKSPSALECGREI--HVE--AMKARLLFD 278
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 8/229 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
++ + +IHA M+ T F S +KL A +E AR++FD+ PQ + WN +
Sbjct: 19 DEPTIAKIHALMILTGIFGHGNSNAKLIQSYA--RLGHIESARQVFDKSPQCGVDAWNAM 76
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-----QAIHGM 149
I AYS ++ ++ ++ + P+ T V+KA R + R G QA+
Sbjct: 77 IIAYSRRGAMFEALSLYHRMA-SEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQG 135
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ DD+ + ++++ YA CG + A VF +G++D+V W +MI+G + G +A+++YR
Sbjct: 136 YGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYR 195
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+M + V+ D V M+ ++ AC + G+ + ++ + I MD+ +
Sbjct: 196 QMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQ 244
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 120/238 (50%), Gaps = 13/238 (5%)
Query: 15 PNPTTLTVN-NGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL 73
P+ +T TV R + ++ ++ Q D F + L+ C +
Sbjct: 103 PDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGA-AVLNLYAKCG-----KM 156
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
+ A ++FD++ + +L W T+I + + + ++ I+ Q+ + + + +I+A
Sbjct: 157 DEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQM-HKKRVEGDGVVMLGLIQA 215
Query: 134 AARPVQFRVGQAIHG--MFED---DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
++G +IHG + +D D+++ SL+ YA G L +A CVF + K+V+SW
Sbjct: 216 CTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISW 275
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+++ISGF + GF A++L +M+ KPD V++V VL AC++ L+ G V +I
Sbjct: 276 SALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYI 333
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + K IH M+ D D + L A + LE A +F ++ N+ +W+
Sbjct: 219 LGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKN--GHLELASCVFRRMLYKNVISWS 276
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYF---PNEFTLPFVIKAAARPVQFRVGQAIHG- 148
LI ++ + + LQLV + F P+ +L V+ A ++ ++G+++HG
Sbjct: 277 ALISGFAQNGFAGNA----LQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGY 332
Query: 149 ---MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
D V S ++I Y+ CG L+ A VF I +D +SWN++I+ + G E+A+
Sbjct: 333 IVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEAL 392
Query: 206 ELYREMEVENVKPDEVTMVVVLSA 229
L+ +M NVKPD T +LSA
Sbjct: 393 SLFLQMRETNVKPDHATFASLLSA 416
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 122/226 (53%), Gaps = 8/226 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQL+++HA ++ T + +KL T + ++ Y +F +P P+ + +N++I+
Sbjct: 23 KQLQQVHAHLIVTGYGRSRSLLTKLITLAC--SARAIAYTHLLFLSVPLPDDFLFNSVIK 80
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
+ S P+ + +++ +S P+ +T VIK+ A R+G+ +H F
Sbjct: 81 STSKLRLPLHCVAYYRRML-SSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFG 139
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + +L+ FY+ CGD+ A VF + +K +V+WNS++SGF + G ++AI+++ +M
Sbjct: 140 LDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQM 199
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+PD T V +LSACA+ + G WV +I G+ +++
Sbjct: 200 RESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKL 245
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 112/216 (51%), Gaps = 9/216 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +H + + F D Y + L T S +E AR++FD++P+ ++ WN+L+ +
Sbjct: 127 KGVHCHAVVSGFGLDTYVQAALVT--FYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFE 184
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ ++ +F Q+ S + P+ T ++ A A+ +G +H + ++
Sbjct: 185 QNGLADEAIQVFYQM-RESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNV 243
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +LI+ Y+ CGD+ A VF + + +V +W +MIS + G+ ++A+EL+ +ME +
Sbjct: 244 KLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDD 303
Query: 215 -NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
P+ VT V VLSACA +E G V + K+
Sbjct: 304 CGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKS 339
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/171 (18%), Positives = 67/171 (39%), Gaps = 25/171 (14%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD++ + N+ W +I AY + Q+ +F ++ + PN T V+ A A
Sbjct: 262 AREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACA 321
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
G+ E+ + + Y + + C+ M+G+
Sbjct: 322 HA----------GLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGR------------- 358
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
GF ++A + +++ +L AC R+ + G+ ++ +
Sbjct: 359 --AGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRL 407
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 46/260 (17%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + K +IH ML + F D Y S L ++ C ++ A+++FD + + N+
Sbjct: 164 LKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGF-----VDCAQRVFDGMMERNVV 218
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+WN+LI Y + ++ IF++++ S + P+E TL V+ A A + G IH
Sbjct: 219 SWNSLITCYEQNGPSREALEIFMRMM-ESGFEPDEVTLASVVSACASLAAAKQGLEIHAC 277
Query: 150 ------FEDDLVISNSLIHFYAVCGDLAMAYCV--------------------------- 176
DDL++SN+L+ YA CG + A CV
Sbjct: 278 VVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIRNVVSETSMVSGYAKTASVKA 337
Query: 177 ----FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
F + +++VVSWN++I+G+ + G E+A+ L+R ++ E + P T +L+ACA
Sbjct: 338 ARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYTFGNLLNACAN 397
Query: 233 KRDLEFGIWVSSHIEKNGIK 252
DL+ G +H+ K+G +
Sbjct: 398 LADLQLGRQAHAHVLKHGFR 417
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 128/259 (49%), Gaps = 46/259 (17%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN---- 92
+ +RIHA+++ T F ++ + ++L A + ARK+FDQ+P+ N+++WN
Sbjct: 36 RDTRRIHARIIKTQFAYEVFIQNRLID--AYGKCGCFDDARKIFDQMPEKNVFSWNAIVS 93
Query: 93 ---------------------------TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+LI ++ D ++ F+++ + + NE+
Sbjct: 94 TLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFVKM-HRKGFVLNEY 152
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T + A A ++G IHG+ F D+ + ++LI Y+ CG + A VF +
Sbjct: 153 TFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGM 212
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK----KRDL 236
+++VVSWNS+I+ + + G +A+E++ M +PDEVT+ V+SACA K+ L
Sbjct: 213 MERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAKQGL 272
Query: 237 EFGIWVSSHIEKNGIKMDL 255
E V ++++ ++ DL
Sbjct: 273 EIHACV---VKRDKLRDDL 288
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 12/172 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+S++ AR +F ++ + N+ +WN LI Y+ + E ++ +F +++ P +T +
Sbjct: 333 ASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLF-RMLKREAICPTHYTFGNL 391
Query: 131 IKAAARPVQFRVGQAIHGMF-----------EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
+ A A ++G+ H E D+ + N+LI Y CG + +F
Sbjct: 392 LNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRIFEN 451
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ ++D VSWN+MI G+ + G+ +A+ L+R+M KPD VTM+ L AC+
Sbjct: 452 MVERDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDHVTMIGALCACS 503
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 131/281 (46%), Gaps = 32/281 (11%)
Query: 3 TLSTPVISIPRHPNPTTLTVNNGHQRHPHFLT------NQKQLKRIHAQMLSTDFFFDPY 56
++ +PV P + N R HF++ + Q+ I+A+++ DP+
Sbjct: 6 SMLSPVAGCSALPPNSGTKPKNTPNRRRHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPF 65
Query: 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
+L C S +S+ YA K+F PN+Y + LI S ++ Q++
Sbjct: 66 VVFELLRVC--SNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMI- 122
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLA 171
NS P+ + + V+KA + + G+ +H + I LI Y CG
Sbjct: 123 NSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFE 182
Query: 172 MAYCVF------------VMI------GKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
A VF VMI G KD V W +MI G V G +A+E++R M+
Sbjct: 183 DARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQR 242
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E+V P+EVT+V VLSAC++ L+ G WV S+++K+ I+++
Sbjct: 243 EDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELN 283
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 102/226 (45%), Gaps = 26/226 (11%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT------ 90
K+ + +H+Q+L + KL + E AR++FD++P+ ++
Sbjct: 147 KEGREVHSQVLKLGLSSNRSIRIKLIE--LYGKCGAFEDARRVFDEMPERDVVASTVMIN 204
Query: 91 ------------WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138
W +I + E ++ +F + PNE T+ V+ A +
Sbjct: 205 YYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNM-QREDVMPNEVTIVCVLSACSELG 263
Query: 139 QFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
++G+ + + + + +LI+ Y+ CGD+ A VF + +K+V+++NSMI
Sbjct: 264 ALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIM 323
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
GF G +A+EL+R + + P VT V VL+AC+ E G
Sbjct: 324 GFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELG 369
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A+++F+Q+ + N+ T+N++I ++ + +++ +F L+ + P+ T
Sbjct: 295 SRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLI-KQGFTPSSVTF 353
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
V+ A + G+ E I +S+ Y + + C+ ++G+
Sbjct: 354 VGVLNACSHG----------GLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRL---- 399
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
G E+A R M+V PD V + +LSAC +LE V+
Sbjct: 400 -----------GRLEEAYSFIRMMKV---APDHVMLGALLSACKIHGNLELAERVA 441
>gi|297827241|ref|XP_002881503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327342|gb|EFH57762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 669
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 133/255 (52%), Gaps = 20/255 (7%)
Query: 21 TVNNGHQRH--PHFLTNQKQLK--RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYA 76
V+ G H HF ++ L ++HA+++ D + ASKL + + + A
Sbjct: 19 AVDGGAYGHLIQHFTRHRLPLHALQLHARIVVFSIAPDNFLASKLIS--FYTRQNRFHQA 76
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-----PNEFTLPFVI 131
+FD+I N +++N L+ AY+S + +F +FL + +S Y P+ ++ V+
Sbjct: 77 LHVFDEITVRNAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSGAARPDSISISCVL 136
Query: 132 KAAARPVQFRVGQ--------AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
KA + F +G I G + D+ + N LI +Y C ++ A VF + +
Sbjct: 137 KALSGCDDFWLGSLARQVHGFVIRGGSDSDVFVGNGLITYYTKCDNIESARKVFDEMSDR 196
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
DVVSWNSMISG+ + G FE +LY+ M + KP+EVT++ VL AC + DL FG+ V
Sbjct: 197 DVVSWNSMISGYSQSGSFEDCKKLYKAMLGCSDFKPNEVTVISVLQACGQSSDLVFGMEV 256
Query: 243 SSHIEKNGIKMDLTF 257
+ +N I+MDL+
Sbjct: 257 HKKMIENHIQMDLSL 271
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 51 FFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQ 106
F S S +F L T+ ++E ARK+FD++ ++ +WN++I YS S
Sbjct: 157 FVIRGGSDSDVFVGNGLITYYTKCDNIESARKVFDEMSDRDVVSWNSMISGYSQSGSFED 216
Query: 107 SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFED----DLVISNSLI 161
++ ++ S + PNE T+ V++A + G +H M E+ DL + N++I
Sbjct: 217 CKKLYKAMLGCSDFKPNEVTVISVLQACGQSSDLVFGMEVHKKMIENHIQMDLSLCNAVI 276
Query: 162 HFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
FYA CG L A +F + +KD V++ ++ISG++ G ++A+ L+ EME
Sbjct: 277 GFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEME 327
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F ++ L TWN +I ++ + F +++ PN TL ++ +
Sbjct: 319 AMALFSEMESIGLSTWNAVISGLMQNNHHEEVINSFREMIRCGSR-PNTVTLSSLLPSLT 377
Query: 136 RPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G+ IH ++++ ++ S+I YA G L A VF + ++ W +
Sbjct: 378 YSSNLKGGKEIHAFAIRNGSDNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIVWTA 437
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+I+ + G + A L+ +M+ KPD VT+ VLSA A D
Sbjct: 438 IITAYAVHGDSDSACSLFDQMQCLGTKPDNVTLTAVLSAFAHSGD 482
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 8/226 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQL+++HA ++ T + +KL T + ++ Y +F +P P+ + +N++I+
Sbjct: 23 KQLQQVHAHLIVTSYGRSRSLLTKLITLAC--SARAIAYTHLLFLSVPLPDDFLFNSVIK 80
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
+ S P+ + +++ +S P+ +T VIK+ A ++G+ +H F
Sbjct: 81 STSKLRLPLHCVAYYRRML-SSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFG 139
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + +L+ FY+ CGD+ A VF + +K VV+WNS++SGF + G E AI ++ +M
Sbjct: 140 LDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQM 199
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+PD T V +LSACA+ + G WV +I G+ +++
Sbjct: 200 RESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKL 245
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 110/213 (51%), Gaps = 9/213 (4%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+ K K +H + + F D Y + L T S +E AR++FD++P+ ++ WN
Sbjct: 120 LSALKIGKGVHCHAVVSGFGLDTYVQAALVT--FYSKCGDMEAARQVFDRMPEKSVVAWN 177
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+L+ + + + +F Q+ S + P+ T ++ A A+ +G +H
Sbjct: 178 SLVSGFEQNGLAEDAIRVFYQM-RESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVS 236
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ ++ + +LI+ Y+ CGD+ A VF + + +V +W +MIS + G+ ++A++L
Sbjct: 237 EGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDL 296
Query: 208 YREMEVE-NVKPDEVTMVVVLSACAKKRDLEFG 239
+ +ME + P+ VT V VLSACA +E G
Sbjct: 297 FNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDG 329
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 25/171 (14%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD++ + N+ W +I AY + Q+ +F ++ + PN T V+ A A
Sbjct: 262 AREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACA 321
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
G+ ED + + Y + + C+ M+G+
Sbjct: 322 HA----------GLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGR------------- 358
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
GF ++A ++++ +L AC R+ + G+ ++ +
Sbjct: 359 --AGFLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRL 407
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 130/256 (50%), Gaps = 41/256 (16%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTLI 95
+L+++HAQ++ T+ +++ CA + S YA+++F + + P + WN+ +
Sbjct: 43 ELRQVHAQIIKTNAPLSILPLTRVGLVCAFT--PSFHYAQQIFKCVEKQKPETFVWNSCL 100
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
+A + D PI + M+F +L P+ FT V++A + G+ +HG+ F
Sbjct: 101 KALAEGDSPIDAIMLFYRL-RQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGF 159
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN--------------------- 189
+L + N ++H YA CG++ A +F + ++DVV+WN
Sbjct: 160 RSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSR 219
Query: 190 ----------SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
SMI+G+V+ G ++AI L+ +ME VK +EVT+V VL+ACA L+ G
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLG 279
Query: 240 IWVSSHIEKNGIKMDL 255
+ + + ++G K ++
Sbjct: 280 MRIHEYSNRHGFKRNV 295
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 6/163 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A +F ++P+ N+ +W ++I Y + ++ +F ++ + NE T+ V+ A
Sbjct: 211 EGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKM-EEAGVKCNEVTVVAVLAA 269
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A +G IH F+ ++ ISN+LI Y CG L A VF + ++ VVSW
Sbjct: 270 CADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSW 329
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++MI G G E+A+ L+ +M ++P+ VT + +L AC+
Sbjct: 330 SAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACS 372
>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial; Flags: Precursor
gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 601
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 13/237 (5%)
Query: 32 FLTNQKQLKR----IHAQMLSTDFFFDPYSASK-LFTPCALSTFSSLEYARKMFDQIPQP 86
FL + +LKR IHA ++ST + S S+ L C + YARK+FD++PQ
Sbjct: 22 FLQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIASCG--RIGEISYARKVFDELPQR 79
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
+ +N++I YS P + ++ Q++ P+ T IKA + G+A+
Sbjct: 80 GVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQ-PDSSTFTMTIKACLSGLVLEKGEAV 138
Query: 147 HGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
+++D+ + +S+++ Y CG + A +F + K+DV+ W +M++GF + G
Sbjct: 139 WCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKS 198
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
KA+E YREM+ E D V M+ +L A D + G V ++ + G+ M++ E
Sbjct: 199 LKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVE 255
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 100/201 (49%), Gaps = 11/201 (5%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F S L+ C ++ A +F ++ + ++ W T++ ++ + + +++ +
Sbjct: 152 FVCSSVLNLYMKCG-----KMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYR 206
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVC 167
++ N + + + +++A+ ++G+++HG ++V+ SL+ YA
Sbjct: 207 EM-QNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKV 265
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G + +A VF + K VSW S+ISGF + G KA E EM+ +PD VT+V VL
Sbjct: 266 GFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVL 325
Query: 228 SACAKKRDLEFGIWVSSHIEK 248
AC++ L+ G V +I K
Sbjct: 326 VACSQVGSLKTGRLVHCYILK 346
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 8/225 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + K + +H + T + + L A F +E A ++F ++ +W
Sbjct: 230 LGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGF--IEVASRVFSRMMFKTAVSWG 287
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
+LI ++ + ++F +++ + + P+ TL V+ A ++ + G+ +H
Sbjct: 288 SLISGFAQNGLANKAFEAVVEM-QSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILK 346
Query: 153 ----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
D V + +L+ Y+ CG L+ + +F +G+KD+V WN+MIS + G ++ + L+
Sbjct: 347 RHVLDRVTATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLF 406
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGI-WVSSHIEKNGIK 252
+M N++PD T +LSA + +E G W S I K I+
Sbjct: 407 LKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQ 451
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 14/228 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K+ K IH Q+++ F + ++ + ++ C ++ A KMFD++P+ +L +WNT
Sbjct: 164 KRGKEIHGQLITNSFAANVFAMTGVVNMYAKC-----RQIDDAYKMFDRMPERDLVSWNT 218
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+I +S + ++ + L++ + P+ TL V+ AAA VG++IHG
Sbjct: 219 IIAGFSQNGFAKKALELVLRM-QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRA 277
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F + IS +L Y+ CG + A +F + +K VVSWNSM+ G+V+ G EKAI ++
Sbjct: 278 GFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVF 337
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+M E + P VT++ L ACA DLE G +V +++ + D++
Sbjct: 338 EKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDIS 385
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 6/184 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S S+E AR +FD + Q + +WN+++ Y + EP ++ +F +++ P T+
Sbjct: 294 SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKML-EEGIDPTGVTI 352
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A A G+ +H + D+ + NSLI Y+ C + +A +F +
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNG 412
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+ VSWN+MI G+ + G +A+ + EM+ +KPD TMV V+ A A+ W+
Sbjct: 413 RTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWI 472
Query: 243 SSHI 246
I
Sbjct: 473 HGLI 476
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 94/178 (52%), Gaps = 6/178 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A +F+ + +WN +I Y+ + ++ F ++ + P+ FT+
Sbjct: 395 SKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM-KSLGMKPDSFTM 453
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
VI A A R + IHG+ + ++ ++ +L+ Y+ CG + MA +F MI
Sbjct: 454 VSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISD 513
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ V++WN+MI G+ G A++L+ +M+ V+P+++T + V+SAC+ ++ G+
Sbjct: 514 RHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGL 571
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 14/228 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K+ K IH Q+++ F + ++ + ++ C ++ A KMFD++P+ +L +WNT
Sbjct: 164 KRGKEIHGQLITNSFAANVFAMTGVVNMYAKC-----RQIDDAYKMFDRMPERDLVSWNT 218
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+I +S + ++ + L++ + P+ TL V+ AAA VG++IHG
Sbjct: 219 IIAGFSQNGFAKKALELVLRM-QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRA 277
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F + IS +L Y+ CG + A +F + +K VVSWNSM+ G+V+ G EKAI ++
Sbjct: 278 GFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVF 337
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+M E + P VT++ L ACA DLE G +V +++ + D++
Sbjct: 338 EKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDIS 385
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 6/184 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S S+E AR +FD + Q + +WN+++ Y + EP ++ +F +++ P T+
Sbjct: 294 SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKML-EEGIDPTGVTI 352
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A A G+ +H + D+ + NSLI Y+ C + +A +F +
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNG 412
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+ VSWN+MI G+ + G +A+ + EM+ +KPD TMV V+ A A+ W+
Sbjct: 413 RTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWI 472
Query: 243 SSHI 246
I
Sbjct: 473 HGLI 476
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 94/178 (52%), Gaps = 6/178 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A +F+ + +WN +I Y+ + ++ F ++ + P+ FT+
Sbjct: 395 SKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM-KSLGMKPDSFTM 453
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
VI A A R + IHG+ + ++ ++ +L+ Y+ CG + MA +F MI
Sbjct: 454 VSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISD 513
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ V++WN+MI G+ G A++L+ +M+ V+P+++T + V+SAC+ ++ G+
Sbjct: 514 RHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGL 571
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 19/224 (8%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS-LEYARKMFDQIPQPNL----Y 89
N + ++IHAQ++++ +D + SK+ + F++ +EY D + Q N +
Sbjct: 17 NLRIFRQIHAQLVTSGLVYDDFVTSKV-----MEFFANFVEYGDYACDYLEQGNTRLGSF 71
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+N+LI Y + P + ++ ++V + + P+ FT P ++KA + R G+ +HG+
Sbjct: 72 PFNSLINGYVGGEFPQMAVSVYRRMVRDG-FVPDMFTFPVLLKACSNFSGSREGRQVHGV 130
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
D + NSLI Y CGD + A VF + +DVVSWNS+ISGF++ G F++A
Sbjct: 131 VVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEA 190
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
I ++ M+VE P T+V VL+ACA+ DL G + IE+
Sbjct: 191 ISVFFRMDVE---PSMTTLVSVLAACARNGDLCTGKGIHGVIER 231
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 12/227 (5%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTP-CALSTFSSLEYARKMFDQIPQPNLYTWN 92
+ ++ +++H ++ D Y + L A FS A K+FD++ ++ +WN
Sbjct: 119 SGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSC---AGKVFDEMLVRDVVSWN 175
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
+LI + + ++ +F ++ P+ TL V+ A AR G+ IHG+ E
Sbjct: 176 SLISGFMKAGHFDEAISVFFRMDVE----PSMTTLVSVLAACARNGDLCTGKGIHGVIER 231
Query: 153 ----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+LV+ N+++ Y G A +F + +D+VSW MI+G V+ ++++EL+
Sbjct: 232 RFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELF 291
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M + PD + + VLSACA L+FG WV +I + GIK D+
Sbjct: 292 SMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDI 338
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+ +FD++P ++ +W +I SD P QS +F ++ P+ L V+ A A
Sbjct: 256 AKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELF-SMMRTLGISPDAIILTSVLSACA 314
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G +H D+ I +++ YA CG + MA +F + +++ +WN+
Sbjct: 315 SLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNA 374
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++ G G +A+ L+ M + VKP+E+T + +L+AC
Sbjct: 375 LLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACC 415
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Query: 125 FTLPFVIKAAARPVQ-FRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVF 177
F L +V+ + + + R+ + IH G+ DD V S ++ F+A + C +
Sbjct: 2 FNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTS-KVMEFFANFVEYGDYACDY 60
Query: 178 VMIGKKDVVSW--NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+ G + S+ NS+I+G+V G F + A+ +YR M + PD T V+L AC+
Sbjct: 61 LEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSG 120
Query: 236 LEFGIWVSSHIEKNGIKMD 254
G V + K G+ D
Sbjct: 121 SREGRQVHGVVVKLGLLAD 139
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 29/176 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E A K+F + Q N +TWN L+ + ++ +F +++ S PNE T +
Sbjct: 352 GCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLF-EVMIISGVKPNEITFLAI 410
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A G+ ++ +++ Y + L C
Sbjct: 411 LTACCHC----------GLVDEGRKYFDNMSKLYNLLPKLEHYGC--------------- 445
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
MI F G E+A+EL R M +KPD + ++L+AC ++E + +I
Sbjct: 446 MIDLFCRAGLLEEAVELARTMP---MKPDVLIWGLLLNACTTVGNIELSHRIQDYI 498
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 120/219 (54%), Gaps = 7/219 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK+I Q+L T F + +K C + +L YA ++F+ I P L+ +N +I+
Sbjct: 46 QHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIK 105
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
A++ + ++ ++F QL P+ FT PFV KA + R G+ ++G E
Sbjct: 106 AFTKNGSFRKAVLLFRQL-REEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLE 164
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + NSL+ YA G + VF + ++DVVSWN +ISG+V+ +E A++++R M
Sbjct: 165 FDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRM 224
Query: 212 EVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+ + +++P+E T+V LSAC + LE G + ++ +
Sbjct: 225 QQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQ 263
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 119/257 (46%), Gaps = 37/257 (14%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L ++ ++++ ++ + FD Y + L A ++ R++F+++PQ ++ +WN
Sbjct: 145 LGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYA--EVGRVQNLRQVFEEMPQRDVVSWN 202
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
LI Y + +F ++ S PNE T+ + A +G+ IH +
Sbjct: 203 VLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVRE 262
Query: 153 DL----VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG--------- 199
L I N+L+ Y CG L++A +F + K V+ W SM+SG+V G
Sbjct: 263 QLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELF 322
Query: 200 ----------------------FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
F+ A+ L+REM+++ V PD T+V +L+ CA+ LE
Sbjct: 323 ERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLE 382
Query: 238 FGIWVSSHIEKNGIKMD 254
G W+ +I++N I +D
Sbjct: 383 QGKWIHGYIDENKIMID 399
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ AR++F++ P ++ W +I Y + + +F ++ P+ FTL +
Sbjct: 313 GQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVS-PDRFTLVAL 371
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A+ G+ IHG ++ D V+ +LI YA CG + + +F + +KD
Sbjct: 372 LTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDT 431
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
SW S+I G G KA+EL+ EM VKPD++T + VLSAC+ +E G
Sbjct: 432 ASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEG 485
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 157 SNSLIHFYAVC-----GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++L F C G+L A +F I + +N +I F + G F KA+ L+R++
Sbjct: 64 GDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQL 123
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E + PD T V A ++ G V + K+G++ D
Sbjct: 124 REEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFD 166
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 131/292 (44%), Gaps = 68/292 (23%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPC-ALSTFSSLEYARKMFDQIPQPNLYTWN 92
T Q+ +IHA ++ T + + +KL A S+ + L YAR +FD+IP P+ + WN
Sbjct: 14 TKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWN 73
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
T+IRAY +S P +S +F Q+ + + ++L VI+A R GQ +H
Sbjct: 74 TMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLK 133
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCV------------------FVMIG-------- 181
DL + +LI YA GD+ +A + +V +G
Sbjct: 134 IGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDL 193
Query: 182 -----KKDVVSWNSMISGFVEGG-------FFEK------------------------AI 205
++D+VSWN+MI G G F++ A+
Sbjct: 194 FDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEAL 253
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
L+ EM++ NV PD+VTMV VLSAC L G + IE+N I++DL
Sbjct: 254 RLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKL 305
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 96/169 (56%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
++ + A+K+FD+ + +L +W+++I AY+ + + ++ +F ++ + P++ T+
Sbjct: 213 ASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQL-ANVLPDKVTM 271
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A +G+ IH E DL + SL+ YA CGD+ + VF +
Sbjct: 272 VSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNN 331
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+DV +W++MI G GF E A++ + +M E++KP++VT + VLSAC+
Sbjct: 332 RDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACS 380
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 111/205 (54%), Gaps = 8/205 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L ++++++HA L T F P+ +S+L + + L YAR +FD+I + +L WN
Sbjct: 23 LCAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWN 82
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
T+I+ Y + ++F +LV+ Y P+ FTLP VIK AR + G+ IHG+
Sbjct: 83 TIIKCYVENQFSHDGIVLFHELVHE--YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALK 140
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F D+ + SL++ Y+ CG++ A VF + KDVV WNS+I G+ G + A++L
Sbjct: 141 IGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQL 200
Query: 208 YREMEVENVKPDEVTMVVVLSACAK 232
+ EM E +V LS C K
Sbjct: 201 FEEMP-ERDAFSWTVLVDGLSKCGK 224
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 86/202 (42%), Gaps = 39/202 (19%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSF-------------- 108
LS +E ARK+FDQ+P NL +WN +I Y S D ++ F
Sbjct: 218 GLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLM 277
Query: 109 ---------------MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
M F+ L S P+ TL V+ A + G+ IH
Sbjct: 278 IAGYELNGQFMDAVKMFFMMLKLGSR--PSHATLVSVLSAVSGLAVLGKGRWIHSYMEKN 335
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
FE D ++ SLI YA CG + A VF I KK V W ++I G G A+ L+
Sbjct: 336 GFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALF 395
Query: 209 REMEVENVKPDEVTMVVVLSAC 230
EM +KP+ + + VL+AC
Sbjct: 396 LEMCKTGLKPNAIIFIGVLNAC 417
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 8/219 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ K+IH L F D + L S ++ ARK+FD + ++ WN+LI
Sbjct: 129 QEGKQIHGLALKIGFGSDVFVQGSLVN--MYSKCGEIDCARKVFDGMIDKDVVLWNSLID 186
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-HGMFEDDLV 155
Y+ E I LQL P + F+ ++ ++ + + + M +LV
Sbjct: 187 GYARCGE----IDIALQLFEEMPE-RDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLV 241
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
N++I+ Y GD A +F + D+V+WN MI+G+ G F A++++ M
Sbjct: 242 SWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLG 301
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+P T+V VLSA + L G W+ S++EKNG ++D
Sbjct: 302 SRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELD 340
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 127/229 (55%), Gaps = 16/229 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
++ K+ K IH ++++ F ++ ++ + ++ C + A MFD++P+ +L
Sbjct: 44 SDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKC-----RQINDAYNMFDRMPERDLVC 98
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
WNT+I Y+ + + M+ L++ + P+ T+ ++ A A R+G A+HG
Sbjct: 99 WNTMISGYAQNGFAKVALMLVLRM-SEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYV 157
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
FE + +S +L+ Y+ CG +++A +F + + VVSWNSMI G+V+ G E A+
Sbjct: 158 LRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAM 217
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++++M E V+P VT++ L ACA DLE G +V +++ +K+D
Sbjct: 218 LIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQ--LKLD 264
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S S+ AR +FD + + +WN++I Y S + + +IF Q + + P T+
Sbjct: 177 SKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIF-QKMLDEGVQPTNVTV 235
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A A G+ +H + + D+ + NSLI Y+ C + +A +F +
Sbjct: 236 MGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRN 295
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
K +VSWN+MI G+ + G +A+ + EM+ N+KPD TMV V+ A A+
Sbjct: 296 KTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAE 345
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 93/178 (52%), Gaps = 6/178 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A +F + L +WN +I Y+ + ++ F ++ + P+ FT+
Sbjct: 278 SKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEM-QSRNIKPDSFTM 336
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
VI A A R + IHG+ + ++ + +L+ YA CG + A +F M+
Sbjct: 337 VSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNA 396
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ V++WN+MI G+ G + ++EL++EM+ +KP+++T + LSAC+ +E G+
Sbjct: 397 RHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGL 454
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 117/219 (53%), Gaps = 14/219 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+++H +++ F D + L +T C SLE AR++FD++P+ ++ +WN +I
Sbjct: 140 RKVHEDIIARGFESDVIVGTALASMYTKCG-----SLENARQVFDRMPKRDVVSWNAIIA 194
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
YS + +P ++ +F ++ N PN TL V+ A + G+ IH E
Sbjct: 195 GYSQNGQPYEALALFSEMQVNG-IKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIE 253
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+++ N L++ YA CG++ A+ +F + +DV SWN++I G+ +A+ + M
Sbjct: 254 SDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRM 313
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+V +KP+ +TMV VL ACA LE G + + ++G
Sbjct: 314 QVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSG 352
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 119/224 (53%), Gaps = 8/224 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q K+IH + + D + L + ++ A K+F+++P ++ +WN +I
Sbjct: 238 EQGKQIHCYAIRSGIESDVLVVNGLVN--MYAKCGNVNTAHKLFERMPIRDVASWNAIIG 295
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
YS + + ++ F ++ PN T+ V+ A A GQ IHG FE
Sbjct: 296 GYSLNSQHHEALAFFNRMQVRG-IKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFE 354
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ V+ N+L++ YA CG++ AY +F + KK+VV+WN++ISG+ + G +A+ L+ EM
Sbjct: 355 SNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEM 414
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ + +KPD +V VL ACA LE G + + ++G + ++
Sbjct: 415 QAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNV 458
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 105/209 (50%), Gaps = 8/209 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q ++IH + + F + + L + ++ A K+F+++P+ N+ WN +I
Sbjct: 339 EQGQQIHGYAIRSGFESNDVVGNALVN--MYAKCGNVNSAYKLFERMPKKNVVAWNAIIS 396
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
YS P ++ +F+++ P+ F + V+ A A + G+ IHG FE
Sbjct: 397 GYSQHGHPHEALALFIEMQAQG-IKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFE 455
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++V+ L+ YA CG++ A +F + ++DVVSW +MI + G E A+ L+ +M
Sbjct: 456 SNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKM 515
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ K D + +L+AC+ ++ G+
Sbjct: 516 QETGTKLDHIAFTAILTACSHAGLVDQGL 544
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 6/174 (3%)
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
N W I Y + ++ ++ Q+ + P++ VIKA + G+ +
Sbjct: 84 NAVVWKETIIGYVKNGFWNKALRLYYQM-QRTGINPDKLVFLSVIKACGSQSDLQAGRKV 142
Query: 147 H-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
H FE D+++ +L Y CG L A VF + K+DVVSWN++I+G+ + G
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+A+ L+ EM+V +KP+ T+V V+ CA LE G + + ++GI+ D+
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDV 256
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+ + V W I G+V+ GF+ KA+ LY +M+ + PD++ + V+ AC + DL+ G
Sbjct: 82 RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141
Query: 242 VSSHIEKNGIKMDL 255
V I G + D+
Sbjct: 142 VHEDIIARGFESDV 155
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 70/286 (24%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQPNLYTWNTLIR 96
++++ HA ML T F D +SASKL A + ++ YA + ++I PN +T N++IR
Sbjct: 54 EIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIR 113
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----E 151
AY++S P + +F +++ P FP++++ FV+KA A F G+ IHG+F
Sbjct: 114 AYANSSTPEVALTVFREMLLG-PVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLV 172
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS--------------------- 190
D+ + N+L++ Y G +A V + +D VSWNS
Sbjct: 173 TDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEM 232
Query: 191 ----------MISGFVEGGFFEKAIELYREMEVENV------------------------ 216
MISG+ G ++A E++ M V +V
Sbjct: 233 EERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFN 292
Query: 217 --------KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
KPD T+V VLSACA L G WV +I+K+GI+++
Sbjct: 293 KMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIE 338
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 16/188 (8%)
Query: 48 STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS 107
S +F Y+A+ L ++ A+++FD +P ++ +WN ++ AY+ +
Sbjct: 239 SWNFMISGYAAAGL-----------VKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEV 287
Query: 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIH 162
+F +++ +S P+ FTL V+ A A G+ +H + + ++ +L+
Sbjct: 288 LEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVD 347
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
Y+ CG + A VF K+DV +WNS+IS G + A+E++ EM E KP+ +T
Sbjct: 348 MYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGIT 407
Query: 223 MVVVLSAC 230
+ VLSAC
Sbjct: 408 FIGVLSAC 415
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 148 GMFEDDLVISNSLIHFYAVCGD---LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
G+F D S L+ F A + ++ A+ + IG + + NS+I + E A
Sbjct: 66 GLFHDTFSASK-LVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVA 124
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ ++REM + V PD+ + VL ACA E G + K+G+ D+ E
Sbjct: 125 LTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVE 178
>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g37310-like [Cucumis sativus]
Length = 635
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 13/228 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++HA+++ + D + SKL + S S+ A +F +IP+ N+++WN L +Y+
Sbjct: 23 KQLHARLVLSSVVPDNFLGSKLIS--FYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYT 80
Query: 100 SSDEPIQSFMIFLQLVYN--SPYFPNEFTLPFVIKAAARPV-QFRVGQAIHGM-----FE 151
+ +F LV + + P+ FT+ +KA A + + +H E
Sbjct: 81 LHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLE 140
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ + N+LI FY+ C +L +A +F + ++D VSWN+M++G+ +GG +E+ EL+R M
Sbjct: 141 YDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVM 200
Query: 212 --EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
VE VKP+ +T V VL ACA+ DL FGI V + ++ IKMD++
Sbjct: 201 LSSVE-VKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSL 247
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 11/257 (4%)
Query: 1 METLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASK 60
++ S+ V S P TV + +N K +H+ +L +D + +
Sbjct: 89 LKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNA 148
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L T S L AR MFD++P+ + +WN ++ YS + +F ++ +
Sbjct: 149 LIT--FYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEV 206
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYC 175
PN T V++A A+ G +H + D+ + N++I YA CG L A
Sbjct: 207 KPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARE 266
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F + +KD +++ SMISG++ GF +A++L+RE E +P T V+S +
Sbjct: 267 LFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQE----RPRLPTWNAVISGLVQNNR 322
Query: 236 LEFGIWVSSHIEKNGIK 252
E + + ++ +G +
Sbjct: 323 QEGAVDIFRAMQSHGCR 339
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F + +P L TWN +I ++ + IF + + + PN TL ++ +
Sbjct: 295 AMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIF-RAMQSHGCRPNTVTLASILPVFS 353
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G+ IHG ++ ++ ++ ++I YA CG L A VF I + +++W S
Sbjct: 354 HFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTS 413
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+IS + G A+ L+ EM ++PD+VT VL+ACA +L+
Sbjct: 414 IISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELD 460
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 4/157 (2%)
Query: 17 PTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYA 76
P T+T+ + HF T K K IH + + + Y A+ + A + L A
Sbjct: 340 PNTVTLASILPVFSHFST-LKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGY--LHGA 396
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
+ +FDQI +L W ++I AY+ + + +F +++ N P++ T V+ A A
Sbjct: 397 QLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQ-PDQVTFTSVLAACAH 455
Query: 137 PVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMA 173
+ I + + I + H+ + G L+ A
Sbjct: 456 SGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRA 492
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 110/186 (59%), Gaps = 7/186 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQPNLYTWNTLIR 96
++++ HA ML T F D +SASKL A + ++ YA + ++I PN +T N++IR
Sbjct: 24 EIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGFTHNSVIR 83
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-EDDLV 155
AY++S P + +F +++ P FP++++ FV+KA A F G+ IHG+F + DLV
Sbjct: 84 AYANSSTPEIALTVFREMLLG-PVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLV 142
Query: 156 ----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ N+LI+ Y G +A V + +D VSWNS++S +++ G E+A L+ EM
Sbjct: 143 TDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEM 202
Query: 212 EVENVK 217
E NV+
Sbjct: 203 EERNVE 208
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 16/188 (8%)
Query: 48 STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS 107
S +F Y+A+ L ++ AR++FD +P ++ +WN ++ AY+ +
Sbjct: 209 SWNFMISGYAAAGL-----------VKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEV 257
Query: 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIH 162
+F ++ +S P+ FTL V+ A A G+ +H E + ++ +L+
Sbjct: 258 LEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVD 317
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
Y+ CG + A VF K+DV +WNS+I+G G + A+E++ EM E KP+ +T
Sbjct: 318 MYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGIT 377
Query: 223 MVVVLSAC 230
+ VLSAC
Sbjct: 378 FIGVLSAC 385
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 38/219 (17%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ ++IH + +D D + + L S + E ARK+ D++P + +WN+L+
Sbjct: 127 EEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGY--FEIARKVLDRMPVRDAVSWNSLLS 184
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
AY ++ +F + M E ++
Sbjct: 185 AYLDKGLVEEARALFDE-----------------------------------MEERNVES 209
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N +I YA G + A VF + KDVVSWN+M++ + G + + +E++ M ++
Sbjct: 210 WNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSA 269
Query: 217 -KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+PD T+V VLSACA L G WV +I+K+GI+++
Sbjct: 270 ERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIE 308
>gi|255556057|ref|XP_002519063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541726|gb|EEF43274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 386
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 123/241 (51%), Gaps = 21/241 (8%)
Query: 31 HFLTNQ----KQLKRIHAQMLSTDFFFDPYSASKLFT-PCALSTFSSLEYARKMFDQIPQ 85
HFL K L+++HA ++ + +KL CA S+ Y R++F +
Sbjct: 16 HFLLQAGPRLKPLQQVHAYVIVSGSGHSRSLLTKLLNLACAAG---SIIYTRQIFLSVAN 72
Query: 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN----SPYFPNEFTLPFVIKAAARPVQFR 141
P+ + +NTLI+ S F I+ YN S P+ +T ++K+ A +
Sbjct: 73 PDSFLFNTLIK----STSKFHKFSIYSLFFYNCMLLSDISPSAYTFTSIVKSCADLSSLK 128
Query: 142 VGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
+G+ +HG F D+ + +L+ YA GDL A VF + ++ VVSWNS+ISG+
Sbjct: 129 LGKVVHGHVLVNGFGLDVYVQAALVACYAKSGDLGNARKVFDKMRERSVVSWNSIISGYE 188
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ GF +AI L+++M E +PD T V+VLSACA+ L G WV + +G+ +++
Sbjct: 189 QNGFGREAIRLFKKMREEGFEPDSATFVIVLSACAQLGALSMGCWVHKYTIGHGLDLNVV 248
Query: 257 F 257
Sbjct: 249 L 249
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 8/204 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L++ K K +H +L F D Y + L A S L ARK+FD++ + ++ +WN
Sbjct: 124 LSSLKLGKVVHGHVLVNGFGLDVYVQAALVACYAKS--GDLGNARKVFDKMRERSVVSWN 181
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
++I Y + ++ +F ++ + P+ T V+ A A+ +G +H
Sbjct: 182 SIISGYEQNGFGREAIRLFKKM-REEGFEPDSATFVIVLSACAQLGALSMGCWVHKYTIG 240
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ ++V+ SLI+ Y CG + A VF + +K+VV+W +MISG+ G +A++L
Sbjct: 241 HGLDLNVVLGTSLINMYTRCGTVTKAREVFDSMKEKNVVTWTAMISGYGTNGHGRQAVQL 300
Query: 208 YREMEVENVKPDEVTMVVVLSACA 231
+ EM+ P+ VT V VLSACA
Sbjct: 301 FDEMKRRGPCPNSVTFVAVLSACA 324
>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 110/210 (52%), Gaps = 6/210 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI-PQPNLYTWNTLI 95
K+L++IH+ ++ P + L CA+S SL +A+ +FD P+ WN LI
Sbjct: 19 KKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSDWNYLI 78
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR----PVQFRV-GQAIHGMF 150
R +S+S P+ S + + +++ +S P+ FT F +K+ R P + G I F
Sbjct: 79 RGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSGF 138
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
DD +++ SL+ Y+ G + +A VF + +D+VSWN MI F G +A+ +Y+
Sbjct: 139 LDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKR 198
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
M E V D T+V +LS+CA L G+
Sbjct: 199 MGNEGVCGDSYTLVALLSSCAHVSALNMGV 228
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 8/204 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH ++ + F D A+ L S S+E A K+FD++P +L +WN +I +S
Sbjct: 129 IHGSVIRSGFLDDAIVATSLVR--CYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHV 186
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
Q+ ++ ++ N + +TL ++ + A +G +H + E + +
Sbjct: 187 GLHNQALSMYKRM-GNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFV 245
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
SN+LI YA CG L A VF + K+DV++WNSMI G+ G +AI +R+M V
Sbjct: 246 SNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGV 305
Query: 217 KPDEVTMVVVLSACAKKRDLEFGI 240
+P+ +T + +L C+ + ++ G+
Sbjct: 306 RPNAITFLGLLLGCSHQGLVKEGV 329
>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 10/222 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +H+Q++ T + D A+ L + A SLE ARK+F+Q+P+ N +WN I
Sbjct: 373 KELHSQIVRTAWEADVTVATALISMYA--KCGSLEEARKVFNQMPEKNAVSWNAFIACCC 430
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG------MFEDD 153
++F +F Q+ + P+ T ++ + P F G+ IHG M ++
Sbjct: 431 RHGSEKEAFQVFKQMRRDD-VIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNN 489
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
LV +N+LI Y CG LA A VF I ++D+ SWN+MI+ +V+ G A +L+ + +
Sbjct: 490 LV-ANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKS 548
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E K D+ T + VL A A DL+ G + +EK G++ D+
Sbjct: 549 EGGKGDKYTFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDI 590
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 15/225 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++IH+ + + D ++ L + C SLE ARK+F+++ + N+ +W +I
Sbjct: 172 EQIHSHITKAGYESDVNVSTALINMYCKCG-----SLELARKVFNEMRERNVVSWTAMIS 226
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + ++F++F +L+ S PN+ + ++ A P G +H E
Sbjct: 227 GYVQHGDSKEAFVLFQKLI-RSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLE 285
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++++ N+LI YA CG LA A VF + + VSWN+MI+G+ E GF E+A L+R+M
Sbjct: 286 QEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYGE-GFMEEAFRLFRDM 344
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ + +PD T +L+ CA + DL G + S I + + D+T
Sbjct: 345 QQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVT 389
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 117/221 (52%), Gaps = 8/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H M S F D Y + L + S S+E A +F + ++ +WN +I Y+
Sbjct: 71 KKVHDHMRSAQFEPDIYLNNMLIS--MYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYA 128
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
++ +F Q+ PN+ + ++ A P+ G+ IH +E D+
Sbjct: 129 LHGRGQEAVDLFYQM-QREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDV 187
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+S +LI+ Y CG L +A VF + +++VVSW +MISG+V+ G ++A L++++
Sbjct: 188 NVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRS 247
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+P++V+ +L AC DLE G+ + ++I++ G++ ++
Sbjct: 248 GTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEV 288
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 8/190 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPF 129
L AR++F +I + +L +WN +I AY +F +F++ Y S +++T
Sbjct: 503 GKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIK--YKSEGGKGDKYTFIN 560
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V++A A G+ IHG+ E D+ I +LI Y+ CG L AY VF + +KD
Sbjct: 561 VLRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKD 620
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VV WN+M++ + + A++L+++M +E V PD T VL+ACA+ +E G +
Sbjct: 621 VVCWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKKFHT 680
Query: 245 HIEKNGIKMD 254
+++ ++ D
Sbjct: 681 QLKEAAMETD 690
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SL AR++FD + PN +WN +I Y ++F +F + + P+ FT +
Sbjct: 302 GSLANARQVFDNLRSPNRVSWNAMIAGYGEGFME-EAFRLFRDM-QQKGFQPDRFTYASL 359
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A G+ +H +E D+ ++ +LI YA CG L A VF + +K+
Sbjct: 360 LAICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNA 419
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VSWN+ I+ G ++A +++++M ++V PD VT + +L++C D E G ++
Sbjct: 420 VSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGK 479
Query: 246 IEKNGI 251
I++ G+
Sbjct: 480 IDQWGM 485
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 72/119 (60%), Gaps = 5/119 (4%)
Query: 143 GQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ +H FE D+ ++N LI Y+ CG + A VF + KDVVSWN+MISG+
Sbjct: 70 GKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYAL 129
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
G ++A++L+ +M+ E +KP++ + + +LSAC LEFG + SHI K G + D+
Sbjct: 130 HGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVN 188
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 21/236 (8%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
G Q H H L ++ A +++ + Y+ S L A +F ++
Sbjct: 183 GRQLHAHVLKSE-----FGAHIIAQNALISMYTKSNLIID-----------ALDVFSRMA 226
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+L +W ++I +S +++ F ++++ Y PNEF V A + +Q G+
Sbjct: 227 TRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGR 286
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+HGM D+ SL YA CG L+ A VF IG+ D+V+WN++I+GF GG
Sbjct: 287 QLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGG 346
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++AI + +M + + PDE+T+ +L AC +L G+ V +I K G+ +D+
Sbjct: 347 DAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDV 402
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 6/168 (3%)
Query: 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
+L +WN ++ A D+ + F + L+L+ S + P+ TL V+ A+A V +G
Sbjct: 432 ADLVSWNAILTACMRHDQAEEVFRL-LKLMCISQHRPDYITLTNVLGASAETVSIEIGNQ 490
Query: 146 IHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
+H D ++N LI YA CG L A+ +F + DVVSW+S+I G+ + G+
Sbjct: 491 VHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGY 550
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
E+A++L++ M +VKP+ VT V VL+AC+ +E G + +EK
Sbjct: 551 GEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEK 598
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 112/230 (48%), Gaps = 9/230 (3%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
+L + + K+IH ML + D + + SL+ A+K+FD +P+ N+ +W
Sbjct: 75 YLRSLEHGKKIHDHMLKSKSHPDLTLQNHILN--MYGKCKSLKDAQKVFDAMPERNVVSW 132
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
++I YS + + + + Q++ S P++FT +IKA + +G+ +H
Sbjct: 133 TSVIAGYSQNGQGGNALEFYFQML-QSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVL 191
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F ++ N+LI Y + A VF + +D++SW SMI+GF + G+ +A+
Sbjct: 192 KSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALC 251
Query: 207 LYREMEVENVK-PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++EM + V P+E V SAC+ E+G + K G+ D+
Sbjct: 252 YFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDV 301
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 12/208 (5%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F S ++ C L L AR +F QI +P+L WN +I ++ + ++ F
Sbjct: 302 FAGCSLCDMYAKCGL-----LSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFS 356
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVC 167
Q+ + P+E T+ ++ A P + G +HG D+ + N+L+ YA C
Sbjct: 357 QMRHQG-LIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKC 415
Query: 168 GDLAMAYCVFV-MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
+L A F M D+VSWN++++ + E+ L + M + +PD +T+ V
Sbjct: 416 SELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNV 475
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIKMD 254
L A A+ +E G V + K G+ D
Sbjct: 476 LGASAETVSIEIGNQVHCYALKTGLNCD 503
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 19/172 (11%)
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF------------TLPFVIKAAARPVQFRV 142
+RA SS+E I S + Q ++N EF T ++I A +
Sbjct: 24 LRAEQSSNEYITS--LCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEH 81
Query: 143 GQAIHG-MFED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ IH M + DL + N +++ Y C L A VF + +++VVSW S+I+G+ +
Sbjct: 82 GKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQ 141
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
G A+E Y +M V PD+ T ++ AC+ D+ G + +H+ K+
Sbjct: 142 NGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKS 193
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 22/166 (13%)
Query: 41 RIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++H L T D + L+ C SL+ A K+FD + P++ +W++LI
Sbjct: 490 QVHCYALKTGLNCDTSVTNGLIDLYAKCG-----SLKTAHKIFDSMINPDVVSWSSLILG 544
Query: 98 YSS---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL 154
Y+ +E ++ F +L PN T V+ A + G ++G E +
Sbjct: 545 YAQFGYGEEALKLFKTMRRLDVK----PNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEF 600
Query: 155 VISNSLIHFYAVCGDLAMAYC-------VFVMIGKKDVVSWNSMIS 193
I+ + H + LA A C + M D+V W ++++
Sbjct: 601 GIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLA 646
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 8/228 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L K+ KR+H +L F + + L A F +E A +FD++ +P++ +WN
Sbjct: 483 LGKVKECKRVHGYVLKLGFGSNTAVVNSLIA--AYFKFGGVESAHNLFDELSEPDVVSWN 540
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---- 148
++I + IF+Q++ + TL V+ A A +G+A+HG
Sbjct: 541 SMINGCVVNGFSGNGLEIFIQMLILGVEV-DLTTLVSVLVAWANIGNLSLGRALHGFGVK 599
Query: 149 -MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F +++V SN+L+ Y+ CG+L A VFV +G +VSW S I+ +V G + AI L
Sbjct: 600 ACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGL 659
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ EM+ + V+PD T+ ++ ACA L+ G V S++ KNG+ +L
Sbjct: 660 FDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNL 707
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 98/174 (56%), Gaps = 7/174 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+E AR +F +IP ++ +WNT+I YS + P ++ +FL + + P++ T+ V
Sbjct: 721 GSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM--QKQFKPDDITMACV 778
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A G+ IHG + DL ++ +L+ YA CG L +A +F MI KKD+
Sbjct: 779 LPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDL 838
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+SW MI+G+ GF +AI + EM + ++PDE + V+L+AC+ L G
Sbjct: 839 ISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEG 892
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 9/194 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +L A ++F ++ + +W + I AY + +F ++ + P+ +T+
Sbjct: 617 SKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEM-QSKGVRPDIYTV 675
Query: 128 PFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
++ A A G+ +H GM +L ++N+LI+ YA CG + A VF I
Sbjct: 676 TSIVHACACSSSLDKGRDVHSYVIKNGM-GSNLPVTNALINMYAKCGSVEEARLVFSKIP 734
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
KD+VSWN+MI G+ + +A+EL+ +M+ + KPD++TM VL ACA L+ G
Sbjct: 735 VKDIVSWNTMIGGYSQNSLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGRE 793
Query: 242 VSSHIEKNGIKMDL 255
+ HI + G DL
Sbjct: 794 IHGHILRRGYFSDL 807
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 14/208 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KR+H+ ++S D +KL + C L RK+FD+I ++ WN L+
Sbjct: 389 KRVHSVIISNGISIDEALGAKLVFMYVNCG-----DLVQGRKIFDKIMNDKVFLWNLLMS 443
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y+ +S +F ++ N +T V+K A + + + +HG F
Sbjct: 444 EYAKIGNFRESVSLFKKM-QKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFG 502
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + NSLI Y G + A+ +F + + DVVSWNSMI+G V GF +E++ +M
Sbjct: 503 SNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQM 562
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ V+ D T+V VL A A +L G
Sbjct: 563 LILGVEVDLTTLVSVLVAWANIGNLSLG 590
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 43/213 (20%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ IH +L +F D + A L + C L L A+ +FD IP+ +L +W +I
Sbjct: 792 REIHGHILRRGYFSDLHVACALVDMYAKCGL-----LVLAQLLFDMIPKKDLISWTVMIA 846
Query: 97 AYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
Y +E I +F + + P+E + ++ A + G ++
Sbjct: 847 GYGMHGFGNEAISTF----NEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNE 902
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ L H+ V LA G KA Y+ +E
Sbjct: 903 CGVEPKLEHYACVVDLLARM-------------------------GNLSKA---YKFIES 934
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+KPD V+LS C D++ V+ HI
Sbjct: 935 MPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHI 967
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 130 VIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V++ A G+ +H + D + L+ Y CGDL +F I
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 434
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
V WN ++S + + G F +++ L+++M+ V + T VL
Sbjct: 435 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKC 479
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 127/250 (50%), Gaps = 39/250 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF--SSLEYARKMFDQIPQPNLYTWNTL 94
K LK+ HAQ+ +T + ++ S++ C+ SL YA ++F+QI P + +NTL
Sbjct: 19 KHLKQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACRVFEQIQNPTVCIYNTL 78
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-- 152
I+A+ +++ + +F++++ S P+ +T+P+V+KA G+ IHG
Sbjct: 79 IKAFLVNNKFKSALQVFVKML-QSELKPDNYTIPYVLKACGTFHDCSFGKMIHGYSSKLG 137
Query: 153 ---DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG-------FFE 202
D+ + NSL+ Y V GD+ A VF I +VVSW+ MISG+ + G FF+
Sbjct: 138 LVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFD 197
Query: 203 KAIE------------------------LYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+A E L+R M++ ++ PDE V +LSACA LE
Sbjct: 198 EAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEI 257
Query: 239 GIWVSSHIEK 248
G+W+ H+ +
Sbjct: 258 GVWIHQHLNQ 267
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 38/228 (16%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH FD Y + L F + AR +FD+IP N+ +W+ +I Y+
Sbjct: 127 KMIHGYSSKLGLVFDIYVGNSLMA--MYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYA 184
Query: 100 S----------------SDEPIQSFMI--------------FLQLVYNSPYFPNEFTLPF 129
D+ I MI +L+ + P+E
Sbjct: 185 KVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVS 244
Query: 130 VIKAAARPVQFRVGQAIHGMFED------DLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
++ A A +G IH + +S SL+ YA CG+L +A +F + +
Sbjct: 245 ILSACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMR 304
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
DVV WN+MISG G + A++L+ +ME VKPD++T + V +AC+
Sbjct: 305 DVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDITFIAVFTACS 352
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L A VF I V +N++I F+ F+ A++++ +M +KPD T+ VL A
Sbjct: 57 LTYACRVFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKA 116
Query: 230 CAKKRDLEFGIWVSSHIEKNGIKMDL 255
C D FG + + K G+ D+
Sbjct: 117 CGTFHDCSFGKMIHGYSSKLGLVFDI 142
>gi|357145591|ref|XP_003573696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Brachypodium distachyon]
Length = 618
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 109/185 (58%), Gaps = 6/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A MFD++ ++ +W T+I AY ++ +F +V + Y+PNEFT+ ++KA +
Sbjct: 235 ASTMFDKMASRDVISWTTMITAYVQHGRGDKALEMFSVMV-SEGYYPNEFTVCSILKACS 293
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
FR G+ +HG +++DD+ + ++L+ YA G++ A VF + +++ ++W S
Sbjct: 294 DEKAFRFGKQLHGAIVKKLYKDDIHVGSALVTMYARLGEVFDAQAVFDKMARRNTITWTS 353
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG+ + G EKAI L++ M++ V + +T+V +LSAC + L G + + I KN
Sbjct: 354 MISGYAQSGHGEKAILLFQNMKMRRVSINNLTIVGLLSACGSIQSLRLGKELHAQIIKNS 413
Query: 251 IKMDL 255
I+ +L
Sbjct: 414 IQENL 418
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 117/222 (52%), Gaps = 9/222 (4%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
++R+HA + + + A+ L A + F + ARK+FD++P ++ +W +I Y
Sbjct: 100 VRRVHAISVRSPDGPGMFVANNLIN--AYARFHEISDARKVFDEMPDKSVVSWTAIINGY 157
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDD 153
S + +FL +V S N T ++K+ ++G+ +H G + +
Sbjct: 158 QKSGNYNEVVRLFLDMV-GSGVRGNSLTFVCLLKSCGEQCNTKLGRQVHCCVVKGGWSN- 215
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+++ ++++HFYA CG +A A +F + +DV+SW +MI+ +V+ G +KA+E++ M
Sbjct: 216 VIMDSAVVHFYAQCGHIASASTMFDKMASRDVISWTTMITAYVQHGRGDKALEMFSVMVS 275
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E P+E T+ +L AC+ ++ FG + I K K D+
Sbjct: 276 EGYYPNEFTVCSILKACSDEKAFRFGKQLHGAIVKKLYKDDI 317
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 8/214 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H ++ + D + S L T + + A+ +FD++ + N TW ++I Y+
Sbjct: 302 KQLHGAIVKKLYKDDIHVGSALVT--MYARLGEVFDAQAVFDKMARRNTITWTSMISGYA 359
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDL 154
S ++ ++F + N T+ ++ A R+G+ +H +++L
Sbjct: 360 QSGHGEKAILLFQNMKMRRVSI-NNLTIVGLLSACGSIQSLRLGKELHAQIIKNSIQENL 418
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L+ Y CG+ A + + +D +SW +MISG+ G +A++ +M +
Sbjct: 419 QIGSTLVWCYCKCGEYTYAARILKDMPDRDAISWTAMISGYNSVGHNAEALKSLDDMLWD 478
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
VKP+ T L ACAK L+ G + + K
Sbjct: 479 GVKPNTYTYSSALKACAKLEALQDGRRIHGVVNK 512
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 98/205 (47%), Gaps = 13/205 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL-FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
K +HAQ++ + S L + C ++ YA ++ +P + +W +I Y
Sbjct: 403 KELHAQIIKNSIQENLQIGSTLVWCYCKCGEYT---YAARILKDMPDRDAISWTAMISGY 459
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----D 153
+S ++ ++++ PN +T +KA A+ + G+ IHG+ +
Sbjct: 460 NSVGHNAEALKSLDDMLWDGVK-PNTYTYSSALKACAKLEALQDGRRIHGVVNKTPAFLN 518
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + +SLI Y CG++ A VF + + ++V+W +I+GF + G E+A + M+
Sbjct: 519 VFVGSSLIDMYMRCGNVDDARRVFDAMPEHNLVTWKVIITGFAQNGLCEEAFKYMYLMQQ 578
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEF 238
E D+ + VL++C DL++
Sbjct: 579 EGHDVDDFVLSKVLTSCG---DLQW 600
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 104/192 (54%), Gaps = 6/192 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
+L YAR++FD + + ++ +W +I AY + + +F++++ FPNE T+ ++
Sbjct: 277 NLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKML-GEGMFPNEITMLSLV 335
Query: 132 KAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
K +G+ +H F LV++ + I Y CGD+ A VF KD++
Sbjct: 336 KECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLM 395
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
W++MIS + + ++A +++ M ++P+E TMV +L CAK LE G W+ S+I
Sbjct: 396 MWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYI 455
Query: 247 EKNGIKMDLTFE 258
+K GIK D+ +
Sbjct: 456 DKQGIKGDMILK 467
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 14/208 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +HA L F A+ ++ C + AR +FD +L W+ +I
Sbjct: 348 KLLHAFTLRNGFTLSLVLATAFIDMYGKCG-----DVRSARSVFDSFKSKDLMMWSAMIS 402
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE----- 151
+Y+ ++ ++F IF+ + PNE T+ ++ A+ +G+ IH +
Sbjct: 403 SYAQNNCIDEAFDIFVHMT-GCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIK 461
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+++ S + YA CGD+ A+ +F +D+ WN+MISGF G E A+EL+ EM
Sbjct: 462 GDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEM 521
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
E V P+++T + L AC+ L+ G
Sbjct: 522 EALGVTPNDITFIGALHACSHSGLLQEG 549
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
LI +Y ++ P + I+ + N F +P V+KA F +GQ +HG
Sbjct: 95 LITSYIKNNCPADAAKIYAYMRGTDTEVDN-FVIPSVLKACCLIPSFLLGQEVHGFVVKN 153
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F D+ + N+LI Y+ G LA+A +F I KDVVSW++MI + G ++A++L
Sbjct: 154 GFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLL 213
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
R+M V VKP E+ M+ + A+ DL+ G + +++ +NG
Sbjct: 214 RDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNG 255
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 20/238 (8%)
Query: 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
P FL Q+ +H ++ F D + + L S SL AR +FD+I ++
Sbjct: 138 PSFLLGQE----VHGFVVKNGFHGDVFVCNALIM--MYSEVGSLALARLLFDKIENKDVV 191
Query: 90 TWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
+W+T+IR+Y S DE + L+ ++ P+E + + A ++G+A+
Sbjct: 192 SWSTMIRSYDRSGLLDEALD----LLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAM 247
Query: 147 HGMF-------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
H + + + +LI Y C +LA A VF + K ++SW +MI+ ++
Sbjct: 248 HAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCN 307
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ + L+ +M E + P+E+TM+ ++ C LE G + + +NG + L
Sbjct: 308 NLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVL 365
>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
Length = 804
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 16/226 (7%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS--SLEYARKMFDQIPQ-PNLYTWNTL 94
Q+K+IHAQ+++ + + L P S +L +AR +FDQ P P WN +
Sbjct: 70 QIKQIHAQVVTHGLAQN----TSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLM 125
Query: 95 IRAYSSSDEPIQSFMIFLQ-LVYNSPYFPNEFTLPFVIKAAAR-PVQFRVGQAIHGM--- 149
I+AYS + +S +F Q L + P +++T FV A +R P G+ +HGM
Sbjct: 126 IQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVK 185
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF-VEGGFFEKAIE 206
+E D+ + NSL++ Y++ + A VF + ++DV++W S++ G+ + G F+ +A++
Sbjct: 186 DGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQ 245
Query: 207 LYREMEV-ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ +M + VKP+E +V +LSACA L+ G W+ +I+KN I
Sbjct: 246 CFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRI 291
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 116/232 (50%), Gaps = 15/232 (6%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN 87
RHP T + + +H ++ + D + + L S FS + A+++FD++PQ +
Sbjct: 168 RHP---TLRGYGENVHGMVVKDGYESDIFVGNSLVN--MYSIFSRMVDAKRVFDEMPQRD 222
Query: 88 LYTWNTLIRAYSSSDEPI-QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
+ TW ++++ Y+ E ++ F ++ + PNE L ++ A A G+ I
Sbjct: 223 VITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWI 282
Query: 147 HGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
H + + + IS +LI YA CG + A VF + K+D+++W SMISG G
Sbjct: 283 HVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLG 342
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAK----KRDLEFGIWVSSHIEKN 249
+ + + EM E KPD++T++ VL+ C+ + ++ G+ V S E N
Sbjct: 343 AECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEEIVHGMVVKSGFESN 394
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 9/187 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ AR++FD + + +L TW ++I S + F +++ + P++ TL V+
Sbjct: 311 IDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEG-FKPDDITLLGVLN 369
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ + +HGM FE +L + NS+I+ +V + A VF + ++DV S
Sbjct: 370 GCSHSGLVE-EEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFS 428
Query: 188 WNSMISGFVEGGFFEKA-IELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
W S++ G+ + G ++A + + M ++ V P+E +V VLSACA L+ G W+ +
Sbjct: 429 WTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLY 488
Query: 246 IEKNGIK 252
I+K GI+
Sbjct: 489 IDKIGIR 495
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 110/253 (43%), Gaps = 52/253 (20%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ + F + Y + + C S F+ +E ARK+F+Q+ + ++++W +L+ Y+
Sbjct: 382 VHGMVVKSGFESNLYVGNSVINMC--SVFARMEDARKVFNQMSERDVFSWTSLLGGYAKH 439
Query: 102 DEPIQ-SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI---- 156
E + S F ++ + PNE L V+ A A G IH ++ D + I
Sbjct: 440 GEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIH-LYIDKIGIRQSS 498
Query: 157 --SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV------------------ 196
S +LI YA CG + A VF I K+DV+S+ SMISG
Sbjct: 499 NISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRGSSILANM 558
Query: 197 ---------------------EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
G+ E+A+E+ + M +E PD V +LSA +
Sbjct: 559 ESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPME---PDIVIWRALLSASRIHHN 615
Query: 236 LEFGIWVSSHIEK 248
+ G + SHI +
Sbjct: 616 VNLGEQIISHIGQ 628
>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Glycine max]
Length = 770
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 12/245 (4%)
Query: 13 RHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS 72
+HP+ TTL V FL K+ +HA F+ D Y AS L S
Sbjct: 412 QHPDRTTLAVILSSCAELGFLEAGKE---VHAASQKFGFYDDVYVASSLIN--VYSKCGK 466
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E ++ +F ++P+ ++ WN+++ +S + Q + F + + +FP+EF+ V+
Sbjct: 467 MELSKHVFSKLPELDVVCWNSMLAGFSINSLG-QDALSFFKKMRQLGFFPSEFSFATVVS 525
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ A+ GQ H F DD+ + +SLI Y CGD+ A C F ++ ++ V+
Sbjct: 526 SCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVT 585
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV-SSHI 246
WN MI G+ + G A+ LY +M KPD++T V VL+AC+ ++ G+ + ++ +
Sbjct: 586 WNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAML 645
Query: 247 EKNGI 251
+K G+
Sbjct: 646 QKYGV 650
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 109/216 (50%), Gaps = 8/216 (3%)
Query: 45 QMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEP 104
+M S + D + + T C S + R++FD +P P+L +WN ++ Y+ + +
Sbjct: 340 RMQSDGYEPDDVTYINMLTACVKS--GDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADH 397
Query: 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNS 159
++ +F ++ + + P+ TL ++ + A G+ +H F DD+ +++S
Sbjct: 398 REAVELFRKMQFQCQH-PDRTTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASS 456
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
LI+ Y+ CG + ++ VF + + DVV WNSM++GF + A+ +++M P
Sbjct: 457 LINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPS 516
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E + V+S+CAK L G + I K+G D+
Sbjct: 517 EFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDI 552
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 105/218 (48%), Gaps = 24/218 (11%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+R H ++ + Y + L + C L+ A ++F IP+PN T+ T++
Sbjct: 158 RRTHGVVIKVGLESNIYVVNALLCMYAKCGLNA-----DALRVFRDIPEPNEVTFTTMMG 212
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ----------FRVGQAI 146
+ +++ ++ +F +L+ + +L ++ A+ + G+ +
Sbjct: 213 GLAQTNQIKEAAELF-RLMLRKGIRVDSVSLSSMLGVCAKGERDVGPCHGISTNAQGKQM 271
Query: 147 HGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
H + FE DL + NSL+ YA GD+ A VFV + + VVSWN MI+G+
Sbjct: 272 HTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNS 331
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
EKA E + M+ + +PD+VT + +L+AC K D+ G
Sbjct: 332 EKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRTG 369
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 111/247 (44%), Gaps = 46/247 (18%)
Query: 31 HFLTNQKQL--KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQ 85
H +TN+ L K +HA++ F D + ++ +L++ C + A +FD IP
Sbjct: 15 HCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKC-----DHIASACHVFDNIPH 69
Query: 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQL--------------------------VYNS- 118
N+++WN ++ AY + + +FLQ+ Y+S
Sbjct: 70 KNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSV 129
Query: 119 ---PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDL 170
P+ T V A + G+ HG+ E ++ + N+L+ YA CG
Sbjct: 130 MLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLN 189
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
A A VF I + + V++ +M+ G + ++A EL+R M + ++ D V++ +L C
Sbjct: 190 ADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVC 249
Query: 231 AK-KRDL 236
AK +RD+
Sbjct: 250 AKGERDV 256
>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 98/179 (54%), Gaps = 20/179 (11%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
FS Y R +F QI QPN++ WNT+IR S+D + F L+ + + PN FT PF
Sbjct: 59 FSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSND-CFDDAIEFYGLMRSEGFLPNNFTFPF 117
Query: 130 VIKAAARPVQFRVGQAIH---------------GMFEDDLVISNSLIHFYAVCGDLAMAY 174
V+KA AR + ++G IH GM + + + SL+ YA CG++ A
Sbjct: 118 VLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRN-VFVGTSLVDMYAKCGNMEKAR 176
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN---VKPDEVTMVVVLSAC 230
VF + +KD+VSW +MI G+ G ++AI+L+ +M+ EN +KPD T + +L C
Sbjct: 177 SVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGC 235
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F I + ++ WN+MI G V F+ AIE Y M E P+ T VL ACA+ D
Sbjct: 68 LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127
Query: 236 LEFGIWVSSHIEKNGI 251
L+ G+ + + + K I
Sbjct: 128 LQLGVKIHTLVVKEWI 143
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 11/207 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QL++I AQML P A+ Y+ +F +PN Y++N +IR
Sbjct: 52 QLRQIQAQML-----LHSVEKPNFLIPKAVE-LGDFNYSSFLFSVTEEPNHYSFNYMIRG 105
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----ED 152
+++ ++ + + + S P++FT FV A A+ + VG+++H E
Sbjct: 106 LTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLER 165
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ I++SLI YA CG + A +F I ++D VSWNSMISG+ E G+ + A++L+R+ME
Sbjct: 166 DVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKME 225
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFG 239
E +PDE T+V +L AC+ DL G
Sbjct: 226 EEGFEPDERTLVSMLGACSHLGDLRTG 252
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 6/176 (3%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
YARK+FD+I + + +WN++I YS + + +F ++ + P+E TL ++ A
Sbjct: 185 YARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKM-EEEGFEPDERTLVSMLGAC 243
Query: 135 ARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ R G+ + M + + + LI Y CGDL A VF + KKD V+W
Sbjct: 244 SHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWT 303
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+MI+ + + G +A +L+ EME V PD T+ VLSAC LE G + +H
Sbjct: 304 AMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETH 359
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 14/221 (6%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
P+ TL G H L + + + + ++ + SKL + L+
Sbjct: 231 PDERTLVSMLGACSH---LGDLRTGRLLEEMAITKKIGLSTFLGSKLIS--MYGKCGDLD 285
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR++F+Q+ + + W +I YS + + ++F +F ++ + P+ TL V+ A
Sbjct: 286 SARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM-EKTGVSPDAGTLSTVLSAC 344
Query: 135 ARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+G+ I + ++ ++ L+ Y CG + A VF + K+ +WN
Sbjct: 345 GSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWN 404
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+MI+ + G ++A+ L+ M +V P ++T + VLSAC
Sbjct: 405 AMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSAC 442
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEG-GFFEKAIELYREMEVENVKPDEVTMVVV 226
GD + +F + + + S+N MI G E A+ LYR M+ +KPD+ T V
Sbjct: 79 GDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFV 138
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
ACAK ++ G V S + K G++ D+
Sbjct: 139 FIACAKLEEIGVGRSVHSSLFKVGLERDV 167
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 106/188 (56%), Gaps = 8/188 (4%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+++ AR +FD++P NL WN+LI YS + ++ F ++ N Y P+E T+
Sbjct: 131 IGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKM-QNEGYEPDEVTVVG 189
Query: 130 VIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V+ A A+ VG+ +H GM ++ V+ N+L+ YA CGDL A +F + K
Sbjct: 190 VLSACAQLSLLDVGKDVHKMICAKGMKLNEFVV-NALVDMYAKCGDLTGARLIFERMTNK 248
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+ WNSMISGF G ++A+E + ME N KPDE+T + VLSAC +E G+ +
Sbjct: 249 NNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIF 308
Query: 244 SHIEKNGI 251
S +E+ G+
Sbjct: 309 SKMERYGL 316
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 35/211 (16%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSD---------------------EPIQSF-----M 109
+RK+F+ +P+ N+ TWN +I Y + E I F M
Sbjct: 11 SRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDM 70
Query: 110 IFLQLVYNSPYF--PNEFTLPFVIKAAARPVQFRVGQAIHGMFED----DLVISNSLIHF 163
+ + +N F N T +I A + +A +FED + + +S+I
Sbjct: 71 VAARRTFNEVPFELKNVVTWTVMIDGYASKGEM---EAARLLFEDMPQRNFFVWSSMISG 127
Query: 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
Y G++ A +F + +++V+WNS+I G+ + GF E+A++ + +M+ E +PDEVT+
Sbjct: 128 YCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTV 187
Query: 224 VVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
V VLSACA+ L+ G V I G+K++
Sbjct: 188 VGVLSACAQLSLLDVGKDVHKMICAKGMKLN 218
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
YA CGD+ + +F + +++VV+WN+MISG+ + G + A L+ +M N V+
Sbjct: 1 MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNA----VS 56
Query: 223 MVVVLSACAKKRDL 236
+ ++ A+ D+
Sbjct: 57 WIEMIDGFARSGDM 70
>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
Length = 616
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 115/227 (50%), Gaps = 16/227 (7%)
Query: 40 KRIHAQM----LSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
K IHA M L D F D + +F C SL+ +R++FD ++ WN++I
Sbjct: 187 KEIHAHMKRIWLKPDVFVDSALVT-MFAKCG-----SLKESREVFDDCRWKDVLFWNSMI 240
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSP-YFPNEFTLPFVIKAAARPVQFRVGQAIH-----GM 149
AYS S P ++ +F + +SP PN T V+ A + G+ +H
Sbjct: 241 VAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAG 300
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F+ D NSL++ YA CG + A VF + ++ VVSW +IS +V G +A++LYR
Sbjct: 301 FQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYR 360
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+M E V+P+ +T VLSAC+ LE G V + ++ G K DL
Sbjct: 361 KMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLA 407
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 14/209 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q K +H QM+ F FD + + L + C S+ AR++FD + Q + +W
Sbjct: 287 EQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCG-----SITEAREVFDGMKQRTVVSWTG 341
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+I AY P ++ ++ ++ + PN T V+ A + G+A+H
Sbjct: 342 IISAYVRKGHPREALDLYRKM-GSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAA 400
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
++ DL ++N+L+ Y CG + A VF + ++VVSW +MIS + E+AI+LY
Sbjct: 401 GYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAYAHHRHSEEAIQLY 460
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ M++E V+ VL+AC++ LE
Sbjct: 461 KAMDLEGVQASSFIYGTVLTACSQAGLLE 489
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 110/228 (48%), Gaps = 15/228 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH ++ ++ + Y + L S SLE A+K+FD + + + +W+ +I Y
Sbjct: 87 KKIHEHVVKNGYYENVYVGNHLVQ--MYSKCGSLEDAKKVFDGMRRRDSISWSKMIAGYV 144
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR--PVQFRVGQAIHGMFED----- 152
++ ++ + + P+ FT V+ A + P VG+ IH +
Sbjct: 145 RHGLAREAIKLYKAMAID----PDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIWLKP 200
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + ++L+ +A CG L + VF KDV+ WNSMI + + G +AIEL++ M
Sbjct: 201 DVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMG 260
Query: 213 VEN--VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ V+P+ +T VL+AC+ DLE G V + G + D E
Sbjct: 261 SSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAE 308
>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 477
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 7/225 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
LK++HAQ+L ++ P KL + S+ SSL YA +F IP P+ N L+RA
Sbjct: 41 LKQVHAQILRSNL--SPSIILKLILSSSSSSISSLNYALSVFTHIPTPHPTLSNKLLRAL 98
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
S S +P +++ ++ + + ++F+ PF++KAAA+ G IHG+ F D
Sbjct: 99 SRSSKPETVLLVYQKIREDGLFGLDKFSFPFILKAAAKIAALNDGMEIHGVLAKLDFYKD 158
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ L+ Y CG + A VF + +DVV+W++MI+G+ +GG F+ A++L+ EM
Sbjct: 159 PFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGGHFDDALQLFEEMRS 218
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
NV+PD++ + ++SACA+ ++L +G V I +N +D E
Sbjct: 219 SNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLE 263
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 45/255 (17%)
Query: 41 RIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
IH + DF+ DP+ + L + C + AR +FD++ ++ TW+T+I
Sbjct: 145 EIHGVLAKLDFYKDPFLQTGLMGMYVGCG-----KILEARLVFDKMSYRDVVTWSTMING 199
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y + +F ++ +S P++ L +I A AR G+ +H + F
Sbjct: 200 YYQGGHFDDALQLFEEM-RSSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFAL 258
Query: 153 DLVISNSLIHFYAVCGDLAM-------------------------------AYCVFVMIG 181
D + + LI YA CG + M A +F +
Sbjct: 259 DPHLESGLISLYAGCGCMDMAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMD 318
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+KD++ W+ MISG+ E ++A+ L+ EM+ ++PDEVTM+ V+SACA L+
Sbjct: 319 EKDLICWSIMISGYAESDQPQEALHLFNEMQFLGIEPDEVTMLSVISACAHLGVLDQAKR 378
Query: 242 VSSHIEKNGIKMDLT 256
+ ++KNG L+
Sbjct: 379 IHMFVDKNGFGKALS 393
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 8/156 (5%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E AR +F+Q+ + +L W+ +I Y+ SD+P ++ +F ++ + P+E T+ VI
Sbjct: 307 IEDARLIFNQMDEKDLICWSIMISGYAESDQPQEALHLFNEMQFLG-IEPDEVTMLSVIS 365
Query: 133 AAARPVQFRVGQAIHGMFEDD------LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A A + IH MF D L ++N+LI YA CG L A VF + ++V+
Sbjct: 366 ACAHLGVLDQAKRIH-MFVDKNGFGKALSVNNALIDMYAKCGCLEAARAVFEKMQIRNVI 424
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
SW SMI+ F G A+ + +M+ ENV+P+ VT
Sbjct: 425 SWTSMINAFAIHGDANSALNYFHQMKEENVEPNAVT 460
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 103/169 (60%), Gaps = 6/169 (3%)
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
N++IR Y+ S++ + S I+ Q+ + + FP+ T P V+K+ A+ + +G+AIH
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQM-WKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCII 169
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
FE ++ +S +L++ Y C ++ A VF I +++VSWN++I+G+ F K I+
Sbjct: 170 QMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVID 229
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++REM++ KP EVTMV VL ACA L G W+ +I+ N +++++
Sbjct: 230 VFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNV 278
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 8/206 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L Q+ K IH ++ F + Y ++ L T SS+ AR++FD+IP N+ +WN
Sbjct: 155 LCRQELGKAIHCCIIQMGFESNVYVSTALVN--MYGTCSSVSDARQVFDEIPDRNIVSWN 212
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-----H 147
LI Y+ + + +F ++ P E T+ V+ A A G+ I H
Sbjct: 213 ALITGYNHNRMFRKVIDVFREMQIAGAK-PVEVTMVGVLLACAHLGALNQGRWIDDYIDH 271
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
++ + +LI YA CG + A +F + K+V +WN +ISG+ G E A++
Sbjct: 272 NRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQA 331
Query: 208 YREMEVENVKPDEVTMVVVLSACAKK 233
+ M +E KPDEVT + VL AC +
Sbjct: 332 FSRMIMEKFKPDEVTFLGVLCACCHQ 357
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 11/207 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QL++I AQML P A+ Y+ +F +PN Y++N +IR
Sbjct: 48 QLRQIQAQML-----LHSVEKPNFLIPKAVE-LGDFNYSSFLFSVTEEPNHYSFNYMIRG 101
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----ED 152
+++ ++ + + + S P++FT FV A A+ + VG+++H E
Sbjct: 102 LTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLER 161
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ I++SLI YA CG + A +F I ++D VSWNSMISG+ E G+ + A++L+R+ME
Sbjct: 162 DVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKME 221
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFG 239
E +PDE T+V +L AC+ DL G
Sbjct: 222 EEGFEPDERTLVSMLGACSHLGDLRTG 248
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 6/176 (3%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
YARK+FD+I + + +WN++I YS + + +F ++ + P+E TL ++ A
Sbjct: 181 YARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKM-EEEGFEPDERTLVSMLGAC 239
Query: 135 ARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ R G+ + M + + + LI Y CGDL A VF + KKD V+W
Sbjct: 240 SHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWT 299
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+MI+ + + G +A +L+ EME V PD T+ VLSAC LE G + +H
Sbjct: 300 AMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETH 355
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 14/221 (6%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
P+ TL G H L + + + + ++ + SKL + L+
Sbjct: 227 PDERTLVSMLGACSH---LGDLRTGRLLEEMAITKKIGLSTFLGSKLIS--MYGKCGDLD 281
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR++F+Q+ + + W +I YS + + ++F +F ++ + P+ TL V+ A
Sbjct: 282 SARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM-EKTGVSPDAGTLSTVLSAC 340
Query: 135 ARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+G+ I + ++ ++ L+ Y CG + A VF + K+ +WN
Sbjct: 341 GSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWN 400
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+MI+ + G ++A+ L+ M +V P ++T + VLSAC
Sbjct: 401 AMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSAC 438
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEG-GFFEKAIELYREMEVENVKPDEVTMVVV 226
GD + +F + + + S+N MI G E A+ LYR M+ +KPD+ T V
Sbjct: 75 GDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFV 134
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
ACAK ++ G V S + K G++ D+
Sbjct: 135 FIACAKLEEIGVGRSVHSSLFKVGLERDV 163
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 122/255 (47%), Gaps = 43/255 (16%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK IHA + +K+F A+S L YA ++F QI QPN + +NTLIR
Sbjct: 196 QALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIR 255
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR-----PVQFRVGQAIHGM-- 149
YS S P QS +F Q+ N P+ FT F++K +R P+ IHG
Sbjct: 256 GYSKSSSPSQSVQLFNQMRRNC-VDPDGFTFTFLLKGRSRMRIDLPL-IVASDEIHGAVL 313
Query: 150 ---FEDDLVISNSLIHFYAV-------------------------------CGDLAMAYC 175
F L + N+LIH YA G+L +A
Sbjct: 314 KLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQ 373
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + ++DVVSW M+SG+ + +A+EL+REM V+PDEV MV V+SAC D
Sbjct: 374 VFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLGD 433
Query: 236 LEFGIWVSSHIEKNG 250
LE G V +I++NG
Sbjct: 434 LETGFEVHRYIDENG 448
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 99/200 (49%), Gaps = 16/200 (8%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE AR++F ++P+ ++ +W ++ Y+ + ++ +F ++ + P+E + V
Sbjct: 366 GELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREM-RDVGVRPDEVAMVSV 424
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I A G +H +++ + + N+LI YA CG + +A+ VF + +K +
Sbjct: 425 ISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSL 484
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR--DLEFGIW-- 241
++WNSMIS G E A ++ M ++PD VT + +L+A K D +G++
Sbjct: 485 ITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFES 544
Query: 242 ------VSSHIEKNGIKMDL 255
V + +E G +D+
Sbjct: 545 MQRDYGVEAGVEHYGCMVDM 564
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 10/225 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+I A + D +KL S+ YA ++F+ I P+L+ +N +I+A
Sbjct: 23 QLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKA 82
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
+ + +F QL +P+ +T P+V+K + R G+ IH E
Sbjct: 83 FVKRGSLRSAISLFQQL-RERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEF 141
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D + NSL+ YA G + VF + ++D VSWN MISG+V FE+A+++YR M+
Sbjct: 142 DPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQ 201
Query: 213 VE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+E N KP+E T+V LSACA R+LE G + +I ++DLT
Sbjct: 202 MESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIAN---ELDLT 243
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 37/253 (14%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ ++IHA ++ T FDPY + L A +E ++F+++P+ + +WN +I
Sbjct: 125 REGEKIHAFVVKTGLEFDPYVCNSLMDMYA--ELGLVEGFTQVFEEMPERDAVSWNIMIS 182
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-- 154
Y ++ ++ ++ S PNE T+ + A A +G+ IH ++L
Sbjct: 183 GYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDL 242
Query: 155 --VISNSLIHFYAVCGDLAMAYCVF------------------VMIGK------------ 182
++ N+L+ Y CG +++A +F V+ G+
Sbjct: 243 TPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSP 302
Query: 183 -KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+DVV W +MI+G+V+ FE AI L+ EM++ V+PD+ +V +L+ CA+ LE G W
Sbjct: 303 SRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKW 362
Query: 242 VSSHIEKNGIKMD 254
+ ++I++N IKMD
Sbjct: 363 IHNYIDENRIKMD 375
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ AR +F++ P ++ W +I Y + + +F ++ P++F + +
Sbjct: 289 GQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVE-PDKFIVVTL 347
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A+ G+ IH ++ D V+S +LI YA CG + + +F + D
Sbjct: 348 LTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDT 407
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
SW S+I G G +A+EL+ M+ +KPD++T V VLSAC +E G
Sbjct: 408 TSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEG 461
>gi|357120059|ref|XP_003561748.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Brachypodium distachyon]
Length = 596
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 19/230 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++HA++++ + ASKL + S + L AR++FD IPQPNL+ WN ++ A S
Sbjct: 34 QQLHARLVALSVIPSNFLASKLIS--LYSRTARLHDARRVFDAIPQPNLFAWNAILIALS 91
Query: 100 -SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK---AAARPVQFRVGQAIHGM-----F 150
S EP + L+L S P+E T+ ++K A+ + V IH + F
Sbjct: 92 LHSPEPSAA----LRLFAGSGVSPDEVTVSALLKSLAASGTGLSPLVTGEIHALAFLRGF 147
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY-- 208
DL +SN L+ YA GD+ A VF + ++DVVSWNS+IS G + + +EL+
Sbjct: 148 GTDLFVSNGLVTAYANTGDIRSARAVFDEMPRRDVVSWNSLISACTRVGCYRECLELFSG 207
Query: 209 --REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
R + V+P+ VT+ VL +CA+ + ++FG+ V ++G+ MD+
Sbjct: 208 LVRARAIGGVQPNNVTVTSVLHSCAQLKAVDFGVNVLRVAAESGLDMDIA 257
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 10/184 (5%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IHA F D + ++ L T A + + AR +FD++P+ ++ +WN+LI A +
Sbjct: 138 IHALAFLRGFGTDLFVSNGLVT--AYANTGDIRSARAVFDEMPRRDVVSWNSLISACTRV 195
Query: 102 DEPIQSFMIFLQLVYNSPYF---PNEFTLPFVIKAAA--RPVQFRVGQ---AIHGMFEDD 153
+ +F LV PN T+ V+ + A + V F V A + D
Sbjct: 196 GCYRECLELFSGLVRARAIGGVQPNNVTVTSVLHSCAQLKAVDFGVNVLRVAAESGLDMD 255
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ NS++ FYA CG L A + + KKD VS+++MI+G++ G E+ + L+R+ +
Sbjct: 256 IATWNSVVGFYAKCGRLQHARELLERMPKKDTVSYSAMITGYMNNGHVEEGMSLFRQADA 315
Query: 214 ENVK 217
+ +
Sbjct: 316 KGIN 319
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E +F Q + TWN LI + + +++ + PN TL +I
Sbjct: 303 VEEGMSLFRQADAKGINTWNALISGLIQNGRQSDVLGLLHEMI-GASLLPNAATLSIIIP 361
Query: 133 AAARPVQFRVGQAIHG-MFEDDLVISN----SLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ + HG + +D SN +LI Y+ G L MA VF + +
Sbjct: 362 SVPLFSTLLGAKQAHGYVIRNDYDQSNNVVSALIDAYSKAGFLDMAKKVFEWDENRSTIV 421
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
W S+I+ G A+ L+ +M PD VT VVL+ACA
Sbjct: 422 WTSIIAAVAAHGDVAAALGLFNQMVRAGTCPDTVTFTVVLTACA 465
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 7/226 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K L++IHA+++ T +KL + A + S + Y R++F IP+P+ + +++LI
Sbjct: 33 KPLQQIHARIIITGLGRTRSLITKLLS-FAYAAASPISYTRRLFFSIPKPDTFLFHSLIT 91
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
S P +S + + +++ + N +T VIK++A F +G+ IH +
Sbjct: 92 LTSKFSFPQESLLCYRRMLLANISSSN-YTFSAVIKSSADLTAFSIGETIHCHVYICGYG 150
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + +L+ FYA G + +A VF + +K VV+WNSMISG+ + GF ++A+EL+ M
Sbjct: 151 LDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLM 210
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ VKPD T V +LSACA+ + G WV +I +N +++
Sbjct: 211 QDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVL 256
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 105/195 (53%), Gaps = 8/195 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH + + D Y + L + A S + ARK+FD++P+ + WN++I Y +
Sbjct: 140 IHCHVYICGYGLDAYVQAALVSFYAKS--GHVMIARKVFDKMPEKTVVAWNSMISGYEQN 197
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVI 156
++ +F L+ + P+ T ++ A A+ +G +H F+ ++V+
Sbjct: 198 GFGKEAVELFF-LMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVL 256
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+L++ Y+ CG+++ A VF + +K++V+W +MISG+ G +AIEL+ EM +
Sbjct: 257 GTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGP 316
Query: 217 KPDEVTMVVVLSACA 231
+P+ VT V VLSACA
Sbjct: 317 RPNNVTFVAVLSACA 331
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 101/184 (54%), Gaps = 6/184 (3%)
Query: 79 MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138
MFD I P+ +NT+ RAY +SD P ++ + + + PNEFTLPFV+KA R
Sbjct: 1 MFDGILDPDRVMYNTITRAYCNSDCPREALRLH-RCMLRRGVLPNEFTLPFVVKACTRAQ 59
Query: 139 QFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
+ A+HG+ F + ++N+L+H YA G L + F + ++VVSWNSMI
Sbjct: 60 AWDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIG 119
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
G+ + G +A L+ EM + DE T+ +L AC+++ +LEFG V + +G +
Sbjct: 120 GYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPV 179
Query: 254 DLTF 257
DL
Sbjct: 180 DLIL 183
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 117/244 (47%), Gaps = 39/244 (15%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H L F + A+ L + ++ SL +R+ FD++ N+ +WN++I Y+ +
Sbjct: 67 VHGVALKLGFVGQVFVANALLH--SYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQA 124
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVI 156
+ ++ +F ++ + +EFTL ++ A ++ G+ +H + DL++
Sbjct: 125 GDTREACALFGEM-RRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLIL 183
Query: 157 SNSLIHFYAVCGDLAM-------------------------------AYCVFVMIGKKDV 185
+L+ Y+ CGDL M A C F + +++
Sbjct: 184 GGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNT 243
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VSWN+MIS +V+ G + +A++LY++M+ PDE T+V VLSAC + DL G V +
Sbjct: 244 VSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLY 303
Query: 246 IEKN 249
I N
Sbjct: 304 IRDN 307
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 7/180 (3%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
CA + S++ AR FD +P+ N +WNT+I Y + ++ ++ Q+ + P P+E
Sbjct: 220 CAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPA-PDE 278
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVM 179
TL V+ A R VG+ +H D D+ + NSL+ YA CG + A +F
Sbjct: 279 ATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFRE 338
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++VVSWN +I G G AI +R M V N PD +T V +LS+C+ LE G
Sbjct: 339 MCNRNVVSWNVIIGGLAMHGRALDAITFFRSM-VRNTSPDGITFVALLSSCSHGGLLETG 397
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 124/258 (48%), Gaps = 39/258 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N +K + A+++ + D KL C ++ ++YA +FDQI P+ +TWN
Sbjct: 43 SNFTHVKLVQAKIIRNNLSDDQLLVRKLLRLCF--SYQKVDYATLIFDQIQNPHTFTWNF 100
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IRAY+ + Q+ +++ L+ + P++FT PFVIKA G+ +HG
Sbjct: 101 MIRAYNYNGNSQQALLLY-NLMICEGFSPDKFTFPFVIKACLDHSALDKGKEVHGFAIKT 159
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF------- 201
F D +SN+L+ Y CGDL A +F + + VVSW + ++G V G
Sbjct: 160 GFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVSWTTFVAGLVACGELDTARAAF 219
Query: 202 ------------------------EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
++A EL++ M++ NV+P+ T+V +L AC + LE
Sbjct: 220 DEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGLLRACTELGSLE 279
Query: 238 FGIWVSSHIEKNGIKMDL 255
G + + +NG K+ +
Sbjct: 280 LGRRIHEYALENGFKVGV 297
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 6/179 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L L+ AR FD++P N+ +W +I Y + P ++F +F Q + + PN F
Sbjct: 205 GLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELF-QRMQLANVRPNGF 263
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
TL +++A +G+ IH F+ + + +LI Y+ CG + A VF +
Sbjct: 264 TLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEM 323
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
KK + +WNSMI+ GF ++A+ L+ +ME NV+PD +T V VL AC ++E G
Sbjct: 324 QKKSLATWNSMITSLGVHGFGKEALALFAQMEEANVRPDAITFVGVLFACVNTNNVEAG 382
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 1/139 (0%)
Query: 117 NSPYFPNEFTLPFVIKAAA-RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYC 175
N P F ++ L + K + V+ + I DD ++ L+ + A
Sbjct: 26 NKPKFGSQEALNLLQKGSNFTHVKLVQAKIIRNNLSDDQLLVRKLLRLCFSYQKVDYATL 85
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F I +WN MI + G ++A+ LY M E PD+ T V+ AC
Sbjct: 86 IFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIKACLDHSA 145
Query: 236 LEFGIWVSSHIEKNGIKMD 254
L+ G V K G D
Sbjct: 146 LDKGKEVHGFAIKTGFWKD 164
>gi|449440993|ref|XP_004138268.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g64310-like [Cucumis sativus]
gi|449523770|ref|XP_004168896.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g64310-like [Cucumis sativus]
Length = 549
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 121/223 (54%), Gaps = 8/223 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
+++ LK +H ++L T F DP S L T A S +E A K+F +I P+L WN++
Sbjct: 119 HREWLKFVHGRVLVTGFGLDPICCSALVT--AYSNLDLIEEASKVFGRIQHPDLVMWNSI 176
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
I + S Q ++F ++ N P+ +T+ V A P G+ IHG+
Sbjct: 177 ICGFGSCGYWNQGLLLFSRM-RNLGELPDGYTVVGVASGIAEPSLLSTGKGIHGLCLKCN 235
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F+ + ++++L+ Y+ C + AY VF + + D+V+W+++I+G+ + G F KA+ ++
Sbjct: 236 FDSNEHVASALVSMYSRCNCMDSAYLVFSSLLQPDLVTWSALITGYSQAGDFRKAMLFFQ 295
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+ ++ K D + + +L+A A+ ++ GI + ++ + GI+
Sbjct: 296 RLNMQGKKMDSILIASILAATAQSTNIRHGIEIHGYVLRQGIE 338
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH L +F + + AS L + S + ++ A +F + QP+L TW+ LI YS
Sbjct: 225 KGIHGLCLKCNFDSNEHVASALVS--MYSRCNCMDSAYLVFSSLLQPDLVTWSALITGYS 282
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ + + M+F Q + + + ++ A A+ R G IHG E +
Sbjct: 283 QAGD-FRKAMLFFQRLNMQGKKMDSILIASILAATAQSTNIRHGIEIHGYVLRQGIESNE 341
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+IS+SLI Y+ CG L++ VF ++ +K++ ++NS+I G G KA+E++ E+
Sbjct: 342 MISSSLIDMYSKCGYLSLGIRVFHVMSQKNISTYNSVIWGLGLHGLASKALEMFEELLTI 401
Query: 215 NVKPDEVTMVVVLSACA 231
+ P+E T +L AC
Sbjct: 402 GLVPNESTFSALLFACC 418
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 8/205 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +HA + + DP+ A+++ +++ + L YAR +FD+ P ++Y WN++IRAY+
Sbjct: 23 KELHAFITKSHLASDPFYATRIVKLYSIN--AKLGYARHLFDKTPNRSVYLWNSIIRAYA 80
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP-----VQFRVGQAIHGMFEDDL 154
+ + + +FL + + P+ FT +I+A + ++F G+ + F D
Sbjct: 81 KAYKFRDALSLFLTMS-GTETSPDNFTYSCIIRACSENHHREWLKFVHGRVLVTGFGLDP 139
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ ++L+ Y+ + A VF I D+V WNS+I GF G++ + + L+ M
Sbjct: 140 ICCSALVTAYSNLDLIEEASKVFGRIQHPDLVMWNSIICGFGSCGYWNQGLLLFSRMRNL 199
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
PD T+V V S A+ L G
Sbjct: 200 GELPDGYTVVGVASGIAEPSLLSTG 224
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+ ++ Y++ L A +F + V WNS+I + + F A+ L+ M
Sbjct: 41 ATRIVKLYSINAKLGYARHLFDKTPNRSVYLWNSIIRAYAKAYKFRDALSLFLTMSGTET 100
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
PD T ++ AC++ E+ +V + G +D
Sbjct: 101 SPDNFTYSCIIRACSENHHREWLKFVHGRVLVTGFGLD 138
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 9/227 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
K IH QM+S + D Y +K+ A S L YARK+F+++P+ NL WNT+I AY
Sbjct: 91 KSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAY 150
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ D+ ++++ IF +++ P+ FT ++ G+ +H F+ D
Sbjct: 151 ARVDDYMEAWGIFDRML-KIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGD 209
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME- 212
+ N+LI YA C D VF +G+++ V+WNS+IS + G F A+ L+ M+
Sbjct: 210 TFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQE 269
Query: 213 -VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ ++PD+ T +L+ CA +R+ G + +H+ + I ++ E
Sbjct: 270 SEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVE 316
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 111/216 (51%), Gaps = 8/216 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H+++++ F D + + L A E K+FD++ + N TWN++I A +
Sbjct: 195 KQVHSKLIACGFKGDTFVGNALIDMYA--KCDDEESCLKVFDEMGERNQVTWNSIISAEA 252
Query: 100 SSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDD 153
+ ++FL++ + P++FT ++ A G+ IH +
Sbjct: 253 QFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKN 312
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+++ L+H Y+ CG L A +F + +++ SWNSMI G+ + G ++A+ L+++M++
Sbjct: 313 IIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQL 372
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+KPD ++ +LS+C D + G + + I +N
Sbjct: 373 NGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN 408
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 96/181 (53%), Gaps = 23/181 (12%)
Query: 71 SSLEYARKMFDQIPQPNLYT--WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
S++YA K++DQ + + T WN+++ Y++ +SF FL+++ E +
Sbjct: 428 GSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEML--------ESDIE 479
Query: 129 FVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ + V LV+ +L+ Y+ CG + A VF + K++VSW
Sbjct: 480 YDVLTMVTIVNL-------------LVLETALVDMYSKCGAITKARTVFDNMNGKNIVSW 526
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
N+MISG+ + G ++A+ LY EM + + P+EVT + +LSAC+ +E G+ + + +++
Sbjct: 527 NAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQE 586
Query: 249 N 249
+
Sbjct: 587 D 587
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 110/221 (49%), Gaps = 22/221 (9%)
Query: 18 TTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLE 74
TTL +QR N Q ++IHA ++ + + ++L ++ C L
Sbjct: 282 TTLLTLCANQR------NDNQGRQIHAHLIRANITKNIIVETELVHMYSECG-----RLN 330
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
YA+++F+++ + N Y+WN++I Y + E ++ +F Q+ N P+ F+L ++ +
Sbjct: 331 YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIK-PDCFSLSSMLSSC 389
Query: 135 ARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD--VVS 187
+ G+ +H E++ ++ L+ YA CG + A+ V+ KKD
Sbjct: 390 VSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTAL 449
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
WNS+++G+ G +++ + EM +++ D +TMV +++
Sbjct: 450 WNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVN 490
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 45 QMLSTDFFFDPYSASKLFTPCALST--------FSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ML +D +D + + L T ++ AR +FD + N+ +WN +I
Sbjct: 472 EMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMIS 531
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
YS ++ +++ ++ Y PNE T ++ A + G+ E+ L I
Sbjct: 532 GYSKHGCSKEALILYEEMPKKGMY-PNEVTFLAILSACSHT----------GLVEEGLRI 580
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S+ Y + C+ ++G+ G E A E +M +E
Sbjct: 581 FTSMQEDYNIEAKAEHYTCMVDLLGR---------------AGRLEDAKEFVEKMPIE-- 623
Query: 217 KPDEVTMVVVLSACAKKRDLEFG 239
P+ T +L AC +D++ G
Sbjct: 624 -PEVSTWGALLGACRVHKDMDMG 645
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 122/255 (47%), Gaps = 43/255 (16%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK IHA + +K+F A+S L YA ++F QI QPN + +NTLIR
Sbjct: 9 QALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIR 68
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR-----PVQFRVGQAIHGM-- 149
YS S P QS +F Q+ N P+ FT F++K +R P+ IHG
Sbjct: 69 GYSKSSSPSQSVQLFNQMRRNCVD-PDGFTFTFLLKGRSRMRIDLPL-IVASDEIHGAVL 126
Query: 150 ---FEDDLVISNSLIHFYAV-------------------------------CGDLAMAYC 175
F L + N+LIH YA G+L +A
Sbjct: 127 KLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQ 186
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + ++DVVSW M+SG+ + +A+EL+REM V+PDEV MV V+SAC D
Sbjct: 187 VFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLGD 246
Query: 236 LEFGIWVSSHIEKNG 250
LE G V +I++NG
Sbjct: 247 LETGFEVHRYIDENG 261
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 99/200 (49%), Gaps = 16/200 (8%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE AR++F ++P+ ++ +W ++ Y+ + ++ +F ++ + P+E + V
Sbjct: 179 GELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREM-RDVGVRPDEVAMVSV 237
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I A G +H +++ + + N+LI YA CG + +A+ VF + +K +
Sbjct: 238 ISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSL 297
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR--DLEFGIW-- 241
++WNSMIS G E A ++ M ++PD VT + +L+A K D +G++
Sbjct: 298 ITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFES 357
Query: 242 ------VSSHIEKNGIKMDL 255
V + +E G +D+
Sbjct: 358 MQRDYGVEAGVEHYGCMVDM 377
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 87/146 (59%), Gaps = 9/146 (6%)
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVC----GDLA 171
PN+FT PFV+KA A +G+++HG F D++ + N+L+H Y C G +
Sbjct: 7 LPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIE 66
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A VF + K D VSW++MI G+V G AI L+REM+++ V PDE+TMV VLSAC
Sbjct: 67 FARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACT 126
Query: 232 KKRDLEFGIWVSSHIEKNGIKMDLTF 257
LE G WV S++EK ++ ++
Sbjct: 127 GLGALELGKWVESYVEKERVQKNVEL 152
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 6/172 (3%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C +E+ARK+FD++ + + +W+ +I Y + +F ++ P+E
Sbjct: 57 CCRGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKG-VCPDE 115
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVM 179
T+ V+ A +G+ + E + V +SN+LI +A CGD+ A +F
Sbjct: 116 ITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRS 175
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ ++++VSW S+I G G +A+ ++ EM V PD+V + +LSAC+
Sbjct: 176 MRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACS 227
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 110/207 (53%), Gaps = 11/207 (5%)
Query: 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+++ ++HA + T P +S+L A ++L+YA +FD I +P L +WN LI
Sbjct: 28 EREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLI 87
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
+ Y + + +F +L+ + + P+ FTLP V+K AR + G+ IHG+ F
Sbjct: 88 KCYIENQRSNDAIALFCKLLCD--FVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGF 145
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D + +SL+ Y+ CG++ + VF + KDVVSWNS+I G+ G E A+E++ E
Sbjct: 146 GVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEE 205
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLE 237
M + D + +++ +K LE
Sbjct: 206 MP----EKDSFSWTILIDGLSKSGKLE 228
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+++FDQ+P+ +L TWN++I Y + + ++ +F +++ PN T+ + AA+
Sbjct: 261 AKELFDQMPERSLVTWNSMITGYERNKQFTKALKLF-EVMLREDISPNYTTILGAVSAAS 319
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
V G+ +H F+ D V+ LI Y+ CG + A VF I KK + W S
Sbjct: 320 GMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTS 379
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+I G G E+ +EL+ EM +KP +T + VL+AC+
Sbjct: 380 VIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACS 420
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 8/219 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ K+IH +L F D + S L + S +E RK+FD++ ++ +WN+LI
Sbjct: 131 QEGKQIHGLVLKIGFGVDKFVLSSLVS--MYSKCGEIELCRKVFDRMEDKDVVSWNSLID 188
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-HGMFEDDLV 155
Y+ E + +F ++ + F+ +I ++ + + + M + V
Sbjct: 189 GYARCGEIELALEMFEEMPEK-----DSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSV 243
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
N++I+ Y GD A +F + ++ +V+WNSMI+G+ F KA++L+ M E+
Sbjct: 244 SWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLRED 303
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ P+ T++ +SA + L G WV S+I K+G K D
Sbjct: 304 ISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTD 342
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 156 ISNSLIHFYA--VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+S+ L+ YA +L A+ +F I + +VSWN +I ++E AI L+ ++
Sbjct: 49 VSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLC 108
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ V PD T+ VL CA+ L+ G + + K G +D
Sbjct: 109 DFV-PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVD 148
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQ 85
HP L +Q KR+HA+M + Y + L +T C S+E A ++F+ +
Sbjct: 318 HPEAL---EQGKRVHARMKEVGLDTEIYVGTALLSMYTKCG-----SMEDALEVFNLVKG 369
Query: 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
N+ +W +I ++ ++F+ F +++ S PN T ++ A +RP + G+
Sbjct: 370 RNVVSWTAMIAGFAQHGRMEEAFLFFNKMI-ESGIEPNRVTFMSILGACSRPSALKQGRQ 428
Query: 146 IH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
IH G DD V +L+ YA CG L A VF I K++VV+WN+MI+ +V+
Sbjct: 429 IHDRIIKAGYITDDRV-RTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHE 487
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++ A+ ++ + E +KPD T +L+ C LE G WV S I + G + DL
Sbjct: 488 KYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDL 543
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 120/246 (48%), Gaps = 11/246 (4%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PN T G P L KQ ++IH +++ + D + L + A SL
Sbjct: 405 PNRVTFMSILGACSRPSAL---KQGRQIHDRIIKAGYITDDRVRTALLSMYA--KCGSLM 459
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR +F++I + N+ WN +I AY ++ + F Q + P+ T ++
Sbjct: 460 DARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATF-QALLKEGIKPDSSTFTSILNVC 518
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
P +G+ + + FE DL I N+L+ + CGDL A +F + ++D+VSWN
Sbjct: 519 KSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWN 578
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
++I+GFV+ G + A + ++ M+ VKPD++T +L+ACA L G + + I +
Sbjct: 579 TIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEA 638
Query: 250 GIKMDL 255
+ D+
Sbjct: 639 ALDCDV 644
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 11/185 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+F C L A +F+ +P+ +L +WNT+I + E +F F +++ S
Sbjct: 552 MFVNCG-----DLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYF-KMMQESGV 605
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYC 175
P++ T ++ A A P G+ +H + + D+V+ LI Y CG + A+
Sbjct: 606 KPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHL 665
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + KK+V SW SMI+G+ + G ++A+EL+ +M+ E VKPD +T V LSACA
Sbjct: 666 VFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGL 725
Query: 236 LEFGI 240
++ G+
Sbjct: 726 IKEGL 730
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 101/185 (54%), Gaps = 6/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+++FD++P ++Y+WN L+ Y ++F + Q+V + P+++T +++ A A
Sbjct: 158 AKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVK-PDKYTFVYMLNACA 216
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G + + ++ DL + +LI+ + CG + A VF + ++D+++W S
Sbjct: 217 DAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTS 276
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI+G F++A L++ ME E V+PD+V V +L AC LE G V + +++ G
Sbjct: 277 MITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVG 336
Query: 251 IKMDL 255
+ ++
Sbjct: 337 LDTEI 341
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 96/189 (50%), Gaps = 6/189 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++ A K+F+ +P+ +L TW ++I + + Q+ +F Q++ P++ +
Sbjct: 254 GGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLF-QVMEEEGVQPDKVAFVSL 312
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+KA P G+ +H ++ ++ + +L+ Y CG + A VF ++ ++V
Sbjct: 313 LKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNV 372
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VSW +MI+GF + G E+A + +M ++P+ VT + +L AC++ L+ G +
Sbjct: 373 VSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDR 432
Query: 246 IEKNGIKMD 254
I K G D
Sbjct: 433 IIKAGYITD 441
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIKAAARPVQFRVGQA 145
N N + S + + ++ ++ L + +SP+ + T +++ + G+
Sbjct: 68 NTQRANAFLNRLSKAGQLSEAMLVLLSV--DSPHIQIHRQTYSSLLQLCIKHKNLGDGER 125
Query: 146 IHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
IH + D+ + N LI YA CG+ A +F + KDV SWN ++ G+V+
Sbjct: 126 IHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRR 185
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+E+A L+ +M + VKPD+ T V +L+ACA ++++ G + S I G DL
Sbjct: 186 YEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDL 240
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 37/220 (16%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEF 125
LS +E AR++FD+ P +L +WNTLI Y P ++ +F ++V P+E
Sbjct: 170 LSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEV 229
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ + + +G+ +HG + D V + N+L+ Y CG L MA VF I
Sbjct: 230 TMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERI 289
Query: 181 GKKDVVSWNSMISGFVEGGFFE-------------------------------KAIELYR 209
+ VVSW +MI GF + G + +A+ L+
Sbjct: 290 EHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFH 349
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
EM+ +V PDE+TMV +L+AC++ LE G+WV +IEK+
Sbjct: 350 EMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKH 389
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 6/168 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F ++ ARK+FD++P+ +++ WN L+ Y + ++ +F ++ + P+E T+
Sbjct: 305 AKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEM-QEASVVPDEITM 363
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ A ++ +G +H E + + SLI YA CG++ A +F I +
Sbjct: 364 VNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPE 423
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
K+ ++W +MI G G +AIE +R M KPDE+T + VLSAC
Sbjct: 424 KNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSAC 471
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 18/196 (9%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEP--------IQSFMIFLQLVYNSPYFP 122
S L +A + +P +N IRA S SD+ + ++ L+ + P
Sbjct: 67 SPLRHALALLSSLPAS---AYNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARP 123
Query: 123 NEFTLPFVIKAAARPVQFRVGQA-----IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVF 177
+ T PF++KA AR ++ G A + + D+ + N+ HF ++ G + A +F
Sbjct: 124 DHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLF 183
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN--VKPDEVTMVVVLSACAKKRD 235
+D+VSWN++I G+V G +A+EL+ M E+ V+PDEVTM+ +S C + RD
Sbjct: 184 DRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRD 243
Query: 236 LEFGIWVSSHIEKNGI 251
LE G + ++ +G+
Sbjct: 244 LELGRRLHGFVDSDGV 259
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 117/281 (41%), Gaps = 67/281 (23%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K K+IHAQ+ T DP KL CA++ +L YA ++F P P+ + NTLIR
Sbjct: 16 KPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTLIR 75
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-----QAIHGMFE 151
+ S S P+ S F+QL P+ FT F +KA A R G QA F+
Sbjct: 76 SLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFD 135
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV------------------------- 186
+ + +LI YA CGD A VF + + +VV
Sbjct: 136 AHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCM 195
Query: 187 ------SWNSMISGFVEGG-------------------------------FFEKAIELYR 209
SWN M++G+ + G F++A +R
Sbjct: 196 PVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFR 255
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
E+ E ++ +EV++ VLSACA+ EFG + +EK G
Sbjct: 256 ELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAG 296
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L AR++F ++P + +W+T+I ++ + ++F F +L+ NE +L V
Sbjct: 214 GELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELL-REEIRTNEVSLTGV 272
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFV-MIGKKD 184
+ A A+ F G+ +HG E ++N+LI Y+ CG++AMA VF M +
Sbjct: 273 LSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARS 332
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+VSW S+I+G G E+AI+L+ EME V+PD +T + +L AC+ +E G
Sbjct: 333 IVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEG 387
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 9/222 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH ++L F D Y + L F+ L+ ARK+F+++P ++ +WN+LI Y+
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALID--MYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
++ ++ I+ + N P+ +T+ V++A G IHG+ E D+
Sbjct: 193 ANGYWNEALEIYYRF-RNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDV 251
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+++N L+ Y L +F + +D VSWN+MI G+ + G +E++I+L+ EM V
Sbjct: 252 IVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VN 310
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
KPD +T+ +L AC DLEFG +V ++ +G + D T
Sbjct: 311 QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 352
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 17/228 (7%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCA-----LSTFSSLEYARKMFDQIPQPNLYTWN 92
QL ++H+ +++ ++KL A S+FS A P N+Y WN
Sbjct: 31 QLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS------PSNNVYLWN 84
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
++IRA + + ++ ++ + P+ +T P VI A A + F + ++IH
Sbjct: 85 SIIRALTHNGLFSEALSLYSE-TQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLD 143
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F DL I N+LI Y DL A VF + +DVVSWNS+ISG+ G++ +A+E+
Sbjct: 144 MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEI 203
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
Y V PD TM VL AC +E G + IEK GIK D+
Sbjct: 204 YYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDV 251
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
K+F+ + ++ TWNT+I + S E + + + P+ T+ ++ +
Sbjct: 472 KVFENMKARDIITWNTIIASCVHS-EDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLL 530
Query: 138 VQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
R G+ IHG E D+ + N LI Y+ CG L ++ VF ++ KDVV+W ++I
Sbjct: 531 AAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALI 590
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
S G +KA+ + EME + PD V V ++ AC+ +E G+
Sbjct: 591 SACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGL 638
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 115/247 (46%), Gaps = 16/247 (6%)
Query: 17 PTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYA 76
P LT+ + Q H L + + K +H M+++ + D +++ L A +L +
Sbjct: 314 PDLLTITSILQACGH-LGDLEFGKYVHDYMITSGYECDTTASNILINMYA--KCGNLLAS 370
Query: 77 RKMFDQIPQPNLYTWNTLIRAY---SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
+++F + + +WN++I Y S DE ++ F + + P+ T ++
Sbjct: 371 QEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMM-----KTDVKPDSVTYVMLLSM 425
Query: 134 AARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ + +G+ +H F ++V+SN+L+ YA CG++ + VF + +D+++W
Sbjct: 426 STQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITW 485
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
N++I+ V + + M E V PD TM+ +L C+ G + I K
Sbjct: 486 NTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK 545
Query: 249 NGIKMDL 255
G++ D+
Sbjct: 546 LGLESDV 552
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 9/222 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH ++L F D Y + L F+ L+ ARK+F+++P ++ +WN+LI Y+
Sbjct: 194 KSIHDRVLXMGFGSDLYIGNALID--MYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 251
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
++ ++ I+ + N P+ +T+ V++A G IHG+ E D+
Sbjct: 252 ANGYWNEALEIYYRF-RNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDV 310
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+++N L+ Y L +F + +D VSWN+MI G+ + G +E++I+L+ EM V
Sbjct: 311 IVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VN 369
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
KPD +T+ +L AC DLEFG +V ++ +G + D T
Sbjct: 370 QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 411
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 17/228 (7%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCA-----LSTFSSLEYARKMFDQIPQPNLYTWN 92
QL ++H+ +++ ++KL A S+FS A P N+Y WN
Sbjct: 90 QLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS------PSNNVYXWN 143
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
++IRA + + ++ ++ + P+ +T P VI A A + F + ++IH
Sbjct: 144 SIIRALTHNGLFSEALSLYSE-TQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLX 202
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F DL I N+LI Y DL A VF + +DVVSWNS+ISG+ G++ +A+E+
Sbjct: 203 MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEI 262
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
Y V PD TM VL AC +E G + IEK GIK D+
Sbjct: 263 YYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDV 310
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
K+F+ + ++ TWNT+I + S E + + + P+ T+ ++ +
Sbjct: 531 KVFENMKARDIITWNTIIASCVHS-EDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLL 589
Query: 138 VQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
R G+ IHG E D+ + N LI Y+ CG L ++ VF ++ KDVV+W ++I
Sbjct: 590 AAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALI 649
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
S G +KA+ + EME + PD V V ++ AC+ +E G+
Sbjct: 650 SACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGL 697
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 116/250 (46%), Gaps = 22/250 (8%)
Query: 17 PTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSL 73
P LT+ + Q H L + + K +H M+++ + D +++ ++ C +L
Sbjct: 373 PDLLTITSILQACGH-LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCG-----NL 426
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAY---SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++++F + + +WN++I Y S DE ++ F + + P+ T +
Sbjct: 427 LASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMM-----KTDVKPDSVTYVML 481
Query: 131 IKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ + + +G+ +H F ++V+SN+L+ YA CG++ + VF + +D+
Sbjct: 482 LSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDI 541
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
++WN++I+ V + + M E V PD TM+ +L C+ G +
Sbjct: 542 ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGC 601
Query: 246 IEKNGIKMDL 255
I K G++ D+
Sbjct: 602 IFKLGLESDV 611
>gi|224088613|ref|XP_002308496.1| predicted protein [Populus trichocarpa]
gi|222854472|gb|EEE92019.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 135/230 (58%), Gaps = 15/230 (6%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q K++HA++L + D Y ++L S + +AR +FDQIP N +++N L+ A
Sbjct: 35 QAKQLHARLLLSSSTLDNYLGARLIN--LYSKTKHIHHARHVFDQIPHKNTFSYNALLIA 92
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYF--PNEFTLPFVIKAAARPVQFR---VGQAIH----- 147
Y+ ++ ++ +F L+ +S PN +++ ++K+ + + +G+ IH
Sbjct: 93 YTMNNHHKETINLFSSLLLSSSGDLQPNNYSITCLLKSLSSLLMVTDVCLGKEIHCFVLR 152
Query: 148 -GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
G+ ED + + N+LI FY+ C + A +F + ++DVV+WNSMI+G+ + GFF++ E
Sbjct: 153 RGLVED-VFVENALISFYSKCLGVGFARKLFDKMRERDVVTWNSMIAGYAQAGFFKECKE 211
Query: 207 LYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
LYREM + KP+ VT++ VL AC + +DL FG+ V +I N +++D+
Sbjct: 212 LYREMGALPGFKPNAVTVLSVLQACMQSQDLVFGMEVHRYIVDNKVELDV 261
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 103/208 (49%), Gaps = 15/208 (7%)
Query: 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS- 72
PN ++T +T+ K IH +L D +F AL +F S
Sbjct: 118 QPNNYSITCLLKSLSSLLMVTDVCLGKEIHCFVLRRGLVED------VFVENALISFYSK 171
Query: 73 ---LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+ +ARK+FD++ + ++ TWN++I Y+ + + ++ ++ + PN T+
Sbjct: 172 CLGVGFARKLFDKMRERDVVTWNSMIAGYAQAGFFKECKELYREMGALPGFKPNAVTVLS 231
Query: 130 VIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V++A + G +H D D+++ N+LI YA CG L A +F + +KD
Sbjct: 232 VLQACMQSQDLVFGMEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELFDEMSEKD 291
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREME 212
V++ ++ISG++ G +K +EL+REM+
Sbjct: 292 EVTYGAIISGYMAHGVVDKGMELFREMK 319
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 40/206 (19%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSF--------- 108
L+ C SL+YAR++FD++ + + T+ +I Y + D+ ++ F
Sbjct: 270 LYAKCG-----SLDYARELFDEMSEKDEVTYGAIISGYMAHGVVDKGMELFREMKSRVLS 324
Query: 109 ---MIFLQLVYNS---------------PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
+ LV N+ + PN TL V+ + + G+ IHG
Sbjct: 325 TWNAVISGLVQNNRHEGVVDLVREMQGLGFRPNAVTLSSVLPTLSYFSNLKGGKEIHGYA 384
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
++ ++ ++ ++I YA G L A VF ++ ++ W ++IS G A+
Sbjct: 385 VKNGYDRNIYVATAIIDTYAKLGFLFGAQYVFDQSKERSLIIWTAIISAHAAHGDANSAL 444
Query: 206 ELYREMEVENVKPDEVTMVVVLSACA 231
+ EM ++PD VT VL+ACA
Sbjct: 445 TFFDEMLSNGIQPDHVTFTAVLAACA 470
>gi|356555244|ref|XP_003545944.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 521
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 105/187 (56%), Gaps = 11/187 (5%)
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
+L+ C +L+ A+ +FD++ ++ +W TL+ Y+ ++F +F ++V N+
Sbjct: 203 ELYAKCG-----ALKNAQNLFDKVFARDVVSWTTLLMGYARGGYCEEAFAVFKRMVLNAE 257
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED--DLV----ISNSLIHFYAVCGDLAMA 173
PNE T+ V+ A+A +GQ +H + DLV I N+L++ Y CGD+ M
Sbjct: 258 AEPNEATVVTVLSASASIGALSLGQWVHSYIDSRYDLVVDGNIENALLNMYVKCGDMQMG 317
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF MI KD +SW ++I G G+ +K +EL+ M VE V+PD+VT + VLSAC+
Sbjct: 318 LRVFDMIVHKDAISWGTVICGLAMNGYEKKTLELFSRMLVEVVEPDDVTFIGVLSACSHA 377
Query: 234 RDLEFGI 240
+ G+
Sbjct: 378 GLVNEGV 384
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 18/218 (8%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRA 97
IHA ++ + + D LF +L F + + A +F IP P++ +W +L+
Sbjct: 78 IHAHLVKSGHYLD------LFLQNSLLHFYLAHNDVVSASNLFRSIPSPDVVSWTSLVSG 131
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHG------MF 150
+ S Q+ F + PN TL + A + +G++ H +F
Sbjct: 132 LAKSGFEAQALHHFTNMNAKPKIVRPNAATLVAALCACSSLGALGLGKSAHAYGLRMLIF 191
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ +++ N+++ YA CG L A +F + +DVVSW +++ G+ GG+ E+A +++
Sbjct: 192 DGNVIFDNAVLELYAKCGALKNAQNLFDKVFARDVVSWTTLLMGYARGGYCEEAFAVFKR 251
Query: 211 MEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
M + +P+E T+V VLSA A L G WV S+I+
Sbjct: 252 MVLNAEAEPNEATVVTVLSASASIGALSLGQWVHSYID 289
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 18/224 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +HAQ ++T D A+ +++ C S+E AR++FD++ ++ +W +IR
Sbjct: 283 KAVHAQCMNTGLVDDVRVATALIRMYMGCG-----SIEGARRVFDKMKVRDVVSWTVMIR 337
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y+ + +F +F + P+ T +I A A + + IH F
Sbjct: 338 GYAENSNIEDAFGLFATM-QEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFG 396
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL++ +L+H YA CG + A VF + ++DVVSW++MI +VE G E+A E + M
Sbjct: 397 TDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLM 456
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ NV+PD VT + +L+AC L+ G+ I IK DL
Sbjct: 457 KRNNVEPDVVTYINLLNACGHLGALDLGM----EIYTQAIKADL 496
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 8/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K HAQ++ F D + L + S++ AR++FD + + ++ T+N +I Y+
Sbjct: 182 KEFHAQVIKVGFVSDFRIGTALVS--MYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYA 239
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S + ++F +F ++ + PN + ++ + P G+A+H DD+
Sbjct: 240 KSGDGEKAFQLFYRM-QQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDV 298
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ +LI Y CG + A VF + +DVVSW MI G+ E E A L+ M+ E
Sbjct: 299 RVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEE 358
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++PD +T + +++ACA DL + S + + G DL
Sbjct: 359 GIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDL 399
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 22/236 (9%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
G Q H + + +QL ++ + KL + C ++ AR+ FD +
Sbjct: 80 GKQVRDHIIQSGRQLN-----------IYELNTLIKLHSICG-----NMLEARQTFDSVE 123
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ TWN +I Y+ ++F +F Q+V + P+ T V+ A + P ++G+
Sbjct: 124 NKTVVTWNAIIAGYAQLGHVKEAFALFRQMV-DEAMEPSIITFLIVLDACSSPAGLKLGK 182
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
H F D I +L+ Y G + A VF + K+DV ++N MI G+ + G
Sbjct: 183 EFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSG 242
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EKA +L+ M+ E KP+ ++ + +L C+ L +G V + G+ D+
Sbjct: 243 DGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDV 298
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 14/208 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ IH+Q++ F D + L + C +++ AR++FD + + ++ +W+ +I
Sbjct: 384 REIHSQVVRAGFGTDLLVDTALVHMYAKCG-----AIKDARQVFDAMSRRDVVSWSAMIG 438
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-----QAIHGMFE 151
AY + ++F F L+ + P+ T ++ A +G QAI
Sbjct: 439 AYVENGCGEEAFETF-HLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLV 497
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + N+LI+ G + A +F + ++DVV+WN MI G+ G +A++L+ M
Sbjct: 498 SHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRM 557
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
E +P+ VT V VLSAC++ +E G
Sbjct: 558 LKERFRPNSVTFVGVLSACSRAGFVEEG 585
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 141/311 (45%), Gaps = 83/311 (26%)
Query: 26 HQRHPHFLT---------NQKQLKRIHAQMLSTDFFFDPYS--ASKLFTPCALSTFSSLE 74
H +PH L+ + K LK+IHA ++ T D +++L CA S
Sbjct: 31 HDFNPHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPR 90
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSD-EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
YA + Q+ PNL +N +IR ++S+ + I+ +++ Q++ + P+ +T+PFV+KA
Sbjct: 91 YALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQML-SKGIVPDNYTIPFVLKA 149
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A R G+ +HG D+ +SN+L+ YAVC + A VF ++D+VSW
Sbjct: 150 CAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSW 209
Query: 189 NSMISGFVEGGFFEKAIELY----------------------------------REMEVE 214
+MI G+V+ GF + + LY +EM V+
Sbjct: 210 TTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVK 269
Query: 215 NV-------------------------------KPDEVTMVVVLSACAKKRDLEFGIWVS 243
NV KPD+VT+V VL++CA LE G WV
Sbjct: 270 NVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVH 329
Query: 244 SHIEKNGIKMD 254
+++++N I+ D
Sbjct: 330 AYLDRNQIRAD 340
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 6/162 (3%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
+ARK+F ++P N+ +WN++I + + +S +F ++ P++ TL V+ +
Sbjct: 258 FARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKM-QRLGVKPDDVTLVAVLNSC 316
Query: 135 ARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A +G+ +H + + + I N+L+ YA CG + A VF + +KDV S+
Sbjct: 317 ANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYT 376
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+MI G G KA++L+ EM ++PDEVT V VL+AC+
Sbjct: 377 AMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACS 418
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 9/215 (4%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN 87
R + N + L +IH + + D Y KL CA+S +L YAR++ P+P+
Sbjct: 177 RKDQYCKNLRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPD 236
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG---- 143
+ +NTL+R YS SDEP S +F++++ FP+ F+ FV+KAAA R G
Sbjct: 237 AFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMH 296
Query: 144 -QAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
QA+ + L ++ +LI Y CG + A VF + + ++V+WN++++ G
Sbjct: 297 CQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVS 356
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSA----CAKK 233
A E++ +M V N V + + A CAK+
Sbjct: 357 GAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKR 391
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 7/165 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE A+++F ++P + +W+T+I +S + +SF F +L+ + PNE +L V+
Sbjct: 386 LECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELL-RAEMRPNEVSLTGVLS 444
Query: 133 AAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVF-VMIGKKDVV 186
A ++ F G+ +HG E + ++N+LI Y+ CG++ MA VF M K+ +V
Sbjct: 445 ACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIV 504
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
SW SMI+G G E+AI ++ EM V PDE++ + +L AC+
Sbjct: 505 SWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACS 549
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 37/177 (20%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ-LVYNSPYFPNEFTLPFVIKA 133
+ARK+FD++PQPNL WN ++ A ++ + IF + LV N +
Sbjct: 326 FARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSW------------ 373
Query: 134 AARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
N ++ Y G+L A +F + +D VSW++MI
Sbjct: 374 ------------------------NVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIV 409
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
GF G F ++ +RE+ ++P+EV++ VLSAC++ EFG + +EK+G
Sbjct: 410 GFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSG 466
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 10/206 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTP-CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
K++HAQ+ F FD A+KL C + SS AR +FD+IP+ N++ WN LIR Y
Sbjct: 95 KQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSS---ARLLFDRIPKHNIFLWNVLIRGY 151
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDD 153
+ + + ++ Q+ ++ P+ FT PFV+KA A G+ IH +E D
Sbjct: 152 AWNGPYEAAVQLYYQM-FDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKD 210
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + +LI YA CG + A VF I +D V WNSM++ + + G + + L EM +
Sbjct: 211 VFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVL 270
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFG 239
++P E T+V +SA A L G
Sbjct: 271 TGLRPTEATLVTAISASADNAALPQG 296
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 9/205 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ IH ++ T + D + + L + + AR++FD+I + WN+++ AYS
Sbjct: 196 REIHEHVVQTGWEKDVFVGAALID--MYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYS 253
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ P + ++V P E TL I A+A G+ +HG+ FE
Sbjct: 254 QNGHPDACLSLCSEMVLTG-LRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHD 312
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +L+ YA CG + +A +F +G K VVSWN+MI+G+ G +A++L+ EM
Sbjct: 313 KVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMN-R 371
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
KPD +T V VLSAC+ LE G
Sbjct: 372 VAKPDHITFVGVLSACSHGGLLEEG 396
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
Query: 118 SPYFPNEFTL--PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYC 175
+P + N +L + + A +P + Q F D VI+ L++ Y VC L+ A
Sbjct: 72 TPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARL 131
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F I K ++ WN +I G+ G +E A++LY +M + PD T VL ACA
Sbjct: 132 LFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSA 191
Query: 236 LEFGIWVSSHIEKNGIKMDL 255
+E G + H+ + G + D+
Sbjct: 192 IEHGREIHEHVVQTGWEKDV 211
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 129/280 (46%), Gaps = 40/280 (14%)
Query: 14 HPNPTTLTVNNGHQRHPHFL---TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF 70
+P +L+ H+ + L + +LK+ H+Q++ D + ++ CA+S
Sbjct: 8 QASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKS 67
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L YA ++FD+IP P+ Y +NT+ R Y ++ ++++ S PN+FT P +
Sbjct: 68 GDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKS-VSPNKFTYPPL 126
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I+A G+ IH F D N+LIH Y L A VF + ++DV
Sbjct: 127 IRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDV 186
Query: 186 VSWNSMISGFVEGGFFEKAIE-------------------------------LYREMEVE 214
VSW S+I+G+ + GF +KA E L+ M +E
Sbjct: 187 VSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLE 246
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
NV D+ +LSAC LE G W+ +IEK+GI++D
Sbjct: 247 NVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELD 286
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 106/236 (44%), Gaps = 39/236 (16%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP------------- 86
K+IHA +L F D +S + L F SLE AR++FD +PQ
Sbjct: 140 KQIHAHVLKFGFGADGFSLNNLIH--MYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYS 197
Query: 87 ------------------NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
N +WN +I AY S+ ++F +F ++ + ++F
Sbjct: 198 QWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVL-DKFVAA 256
Query: 129 FVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
++ A G+ IHG E D ++ ++I Y CG L A VF + +K
Sbjct: 257 SMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQK 316
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ SWN MI G G E AIEL++EME E V PD +T V VLSACA +E G
Sbjct: 317 GISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEG 372
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 10/228 (4%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + K IHA +L++ F D + L A L YARK+FD++ ++ TW
Sbjct: 28 LNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYA--KCGDLVYARKLFDEMSSRDVVTWT 85
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV--GQAIHGM- 149
LI YS D P Q ++ L + PN+FTL ++KAA+ V G+ +HG+
Sbjct: 86 ALITGYSQHDRP-QDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLC 144
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
++ ++ +S +++ YA C L A +F ++ K+ VSWN++I+G+ G +KA
Sbjct: 145 LRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAF 204
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
L+ M ENVKP T VL ACA LE G WV + + K G K+
Sbjct: 205 CLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKL 252
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLY 89
T+ Q +++H L + +D S ++ CA+ + LE A+ +FD + N
Sbjct: 132 TDVLQGRQLHG--LCLRYGYD----SNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEV 185
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+WN LI Y+ + ++F +F ++ + P FT V+ A A G+ +H +
Sbjct: 186 SWNALIAGYARKGQGDKAFCLFSNMLRENVK-PTHFTYSSVLCACASMGSLEQGKWVHAL 244
Query: 150 ---FEDDLV--ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ + LV + N+L+ YA G + A VF + K+DVVSWNSM++G+ + G + A
Sbjct: 245 MIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVA 304
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++ + EM + P+++T + VL+AC+ L+ G
Sbjct: 305 LQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEG 339
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 32/210 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q K +HA M+ + + L A S S+E A+K+FD++ + ++ +WN+++
Sbjct: 236 EQGKWVHALMIKWGEKLVAFVGNTLLDMYAKS--GSIEDAKKVFDRLAKRDVVSWNSMLT 293
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
YS + F +++ + PN+ T V+ A + G+
Sbjct: 294 GYSQHGLGKVALQRFEEML-RTRIAPNDITFLCVLTACSHAGLLDEGR------------ 340
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
H++ D+ Y V + + + +M+ G ++AI+ EM +
Sbjct: 341 -----HYF----DMMKKYNV-----EPQISHYVTMVDLLGRAGHLDRAIQFISEMPI--- 383
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
KP +L AC +++E G + + I
Sbjct: 384 KPTAAVWGALLGACRMHKNMELGGYAAECI 413
>gi|10086462|gb|AAG12522.1|AC015446_3 Hypothetical Protein [Arabidopsis thaliana]
Length = 539
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 12/213 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q+K++ + L+ F + S+L CA+S F L +A ++F IP+P WN +IR
Sbjct: 18 QIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPKPLTNDWNAIIRG 77
Query: 98 YSSSDEPIQSF-----MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----- 147
++ S P +F M+ ++ + T F +KA AR + +H
Sbjct: 78 FAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSAMDQLHCQINR 137
Query: 148 -GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
G+ D L+ + +L+ Y+ GDL AY +F + +DV SWN++I+G V G +A+E
Sbjct: 138 RGLSADSLLCT-TLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAME 196
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
LY+ ME E ++ EVT+V L AC+ D++ G
Sbjct: 197 LYKRMETEGIRRSEVTVVAALGACSHLGDVKEG 229
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 5/219 (2%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+ ++H Q+ D + L A S L A K+FD++P ++ +WN LI
Sbjct: 128 MDQLHCQINRRGLSADSLLCTTLLD--AYSKNGDLISAYKLFDEMPVRDVASWNALIAGL 185
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-HGMFEDDLVIS 157
S + ++ ++ ++ +E T+ + A + + G+ I HG D++++S
Sbjct: 186 VSGNRASEAMELYKRM-ETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYSNDNVIVS 244
Query: 158 NSLIHFYAVCGDLAMAYCVFVM-IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+ I Y+ CG + AY VF GKK VV+WN+MI+GF G +A+E++ ++E +
Sbjct: 245 NAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGI 304
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
KPD+V+ + L+AC +E+G+ V +++ G++ ++
Sbjct: 305 KPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNM 343
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 108/194 (55%), Gaps = 7/194 (3%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQ--SFMIF 111
+P + KL CA+S SL YA+ +F +I P WN++IR +S S P+Q + + +
Sbjct: 429 NPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFY 488
Query: 112 LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAV 166
++ S P+ +T F++KA + + +HG ++ D+V+ +LI YA
Sbjct: 489 NHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAG 548
Query: 167 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
G + A+ VF + +D+VSWNSMIS + + G E+A+++Y +M + NV D T+V +
Sbjct: 549 NGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSL 608
Query: 227 LSACAKKRDLEFGI 240
LS+CA L G+
Sbjct: 609 LSSCAHVGALHMGV 622
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A K+F+++P +L +WN++I Y + ++ ++ Q+ ++ F + FTL ++
Sbjct: 552 IETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGF-DGFTLVSLLS 610
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ A +G +H +++ + N+LI YA CG LA A +F + K+DV +
Sbjct: 611 SCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFT 670
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
WNSMI G+ G ++AI + M + V+P+ +T + +L C+ + ++ G+
Sbjct: 671 WNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGV 723
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 21/236 (8%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
G Q H H L ++ A +++ + Y+ S + A +F ++
Sbjct: 183 GRQLHAHVLKSE-----FGAHIIAQNALISMYTKSNVIID-----------ALDVFSRMA 226
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+L +W ++I +S +++ F ++++ Y PNEF V A + +Q G+
Sbjct: 227 TRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGR 286
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+HGM D+ SL YA CG L+ A VF IG+ D+V+WN++I+GF GG
Sbjct: 287 QLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGG 346
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++AI + +M + + PDE+T+ +L AC +L G+ V +I K G+ +D+
Sbjct: 347 DAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDV 402
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 6/168 (3%)
Query: 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
+L +WN ++ A D+ + F + L+L+ S + P+ TL V+ A+A V +G
Sbjct: 432 ADLVSWNAILTACMHHDQAEEVFGL-LKLMCISQHRPDYITLTNVLGASAETVSIEIGNQ 490
Query: 146 IHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
+H D+ ++N LI YA CG L A +F + DVVSW+S+I G+ + G+
Sbjct: 491 VHCYALKTGLNCDISVTNGLIDLYAKCGSLKTARKIFDSVINPDVVSWSSLILGYAQFGY 550
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
E+A++L++ M +VKP+ VT V VL+AC+ +E G + +EK
Sbjct: 551 GEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWQLYGTMEK 598
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 112/230 (48%), Gaps = 9/230 (3%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
+L + + ++IH ML + D + + SL+ A+K+FD +P+ N+ +W
Sbjct: 75 YLRSLEHGRKIHDHMLKSKSHPDLTLQNHILN--MYGKCGSLKDAQKVFDAMPERNVVSW 132
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
++I YS + + + + Q++ S P++FT +IKA + +G+ +H
Sbjct: 133 TSVIAGYSQNGQGGNALEFYFQML-QSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVL 191
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F ++ N+LI Y + A VF + +D++SW SMI+GF + G+ +A+
Sbjct: 192 KSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALC 251
Query: 207 LYREMEVENVK-PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++EM + V P+E V SAC+ E+G + K G+ D+
Sbjct: 252 YFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDV 301
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 12/210 (5%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F S ++ C L L AR +F QI +P+L WN +I ++ + ++ F
Sbjct: 302 FAGCSLCDMYAKCGL-----LSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFS 356
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVC 167
Q+ + P+E T+ ++ A P + G +HG D+ + N+L+ YA C
Sbjct: 357 QMRHQG-LIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKC 415
Query: 168 GDLAMAYCVFV-MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
+L A F M D+VSWN++++ + E+ L + M + +PD +T+ V
Sbjct: 416 SELRDAIFFFEEMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNV 475
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
L A A+ +E G V + K G+ D++
Sbjct: 476 LGASAETVSIEIGNQVHCYALKTGLNCDIS 505
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF------------TLPFVIKAAARPVQFRV 142
+RA SS+E I + + Q ++N EF T ++I A +
Sbjct: 24 LRAEQSSNEYITT--LCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEH 81
Query: 143 GQAIHG-MFED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ IH M + DL + N +++ Y CG L A VF + +++VVSW S+I+G+ +
Sbjct: 82 GRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQ 141
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
G A+E Y +M V PD+ T ++ AC+ D+ G + +H+ K+
Sbjct: 142 NGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKS 193
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 30/189 (15%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
+ T+++ G+Q H + L ++ + T+ D L+ C SL+
Sbjct: 478 ASAETVSIEIGNQVHCYALKTG-----LNCDISVTNGLID------LYAKCG-----SLK 521
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
ARK+FD + P++ +W++LI Y+ +E ++ F +L PN T V+
Sbjct: 522 TARKIFDSVINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVK----PNHVTFVGVL 577
Query: 132 KAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYC-------VFVMIGKKD 184
A + G ++G E + I + H + LA A C + M D
Sbjct: 578 TACSHVGLVEEGWQLYGTMEKEFGIVPTREHCSCMVDLLARAGCLNEAEAFIHQMAFDPD 637
Query: 185 VVSWNSMIS 193
+V W ++++
Sbjct: 638 IVVWKTLLA 646
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 106/200 (53%), Gaps = 7/200 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ K++HA +L F+D + S L CALS + S+EYA +F QI +P + +NT+IR
Sbjct: 45 EEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIR 104
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+S + ++ +++++++ P+ FT PFV+KA + V + G IH E
Sbjct: 105 GNVNSMDLEEALLLYVEML-ERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLE 163
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ + N LI Y CG + A VF + +K V SW+S+I + + + L +M
Sbjct: 164 VDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDM 223
Query: 212 EVENV-KPDEVTMVVVLSAC 230
E + +E +V LSAC
Sbjct: 224 SREGRHRAEESILVSALSAC 243
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 7/205 (3%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
L K+ +IHA + + D + + L + ++E+A +F+Q+ + ++ +W
Sbjct: 143 LLVALKEGVQIHAHVFNAGLEVDVFVQNGLIS--MYGKCGAIEHAGVVFEQMDEKSVASW 200
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF- 150
+++I A++S + + M+ + + E L + A +G+ IHG+
Sbjct: 201 SSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILL 260
Query: 151 ----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
E ++V+ SLI Y CG L CVF + K+ S+ MI+G G +A+
Sbjct: 261 RNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALR 320
Query: 207 LYREMEVENVKPDEVTMVVVLSACA 231
++ +M E + PD+V V VLSAC+
Sbjct: 321 VFSDMLEEGLTPDDVVYVGVLSACS 345
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 148 GMFEDDLVISNSLIHFYAVC-----GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
G+F D SN A C G + A +F I + +N+MI G V E
Sbjct: 58 GLFYDSFCGSN----LVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLE 113
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+A+ LY EM ++PD T VL AC+ L+ G+ + +H+ G+++D+
Sbjct: 114 EALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDV 166
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 135/292 (46%), Gaps = 52/292 (17%)
Query: 7 PVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQ----LKRIHAQMLSTDFFFDPYSASKLF 62
P ISIP +P P L + + L NQ+ L++IHAQ++ T S +
Sbjct: 58 PSISIPTNPIPIDLP----NPQTFSLLLNQRPKLSPLQQIHAQVV-TQALSSNASLTASL 112
Query: 63 TPCALSTFSSLEYARKMFDQIPQPN--LYTWNTLIRAYS---SSDEPIQSFMIFLQLVYN 117
C L + AR +FD P P+ + WN +IR YS +S EPI F+ L L
Sbjct: 113 IHCYLCA-KNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGP 171
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAM 172
P+E+T FVI + + + G+ +HGM FE +L + NS+I+ +V +
Sbjct: 172 MQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMED 231
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN----------------- 215
A VF + ++DV SW S++ G+ + G ++A EL+ M V N
Sbjct: 232 ARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRY 291
Query: 216 ---------------VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
V P+E +V VLSACA L+ G W+ +I+K GI+
Sbjct: 292 PEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIR 343
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 50/261 (19%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ + F + Y + + C S F+ +E ARK+F+Q+ + ++++W +L+ Y+
Sbjct: 200 VHGMVVKSGFESNLYVGNSVINMC--SVFARMEDARKVFNQMSERDVFSWTSLLGGYAKH 257
Query: 102 DE-----------PI--------------------QSFMIFLQLVYNSPYFPNEFTLPFV 130
E P+ ++ F ++ + PNE L V
Sbjct: 258 GEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCV 317
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVI------SNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+ A A G IH ++ D + I S +LI YA CG + A VF I K+D
Sbjct: 318 LSACAHLGALDQGNWIH-LYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRD 376
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG----- 239
V+S+ SMISG G + A+ ++ +M ENV P+E+T++ VL+ C+ +E G
Sbjct: 377 VLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILA 436
Query: 240 ----IW-VSSHIEKNGIKMDL 255
+W ++ IE G +DL
Sbjct: 437 NMESLWGIAPKIEHYGCYIDL 457
>gi|334183024|ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g34160
gi|332193557|gb|AEE31678.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 12/213 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q+K++ + L+ F + S+L CA+S F L +A ++F IP+P WN +IR
Sbjct: 18 QIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPKPLTNDWNAIIRG 77
Query: 98 YSSSDEPIQSF-----MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----- 147
++ S P +F M+ ++ + T F +KA AR + +H
Sbjct: 78 FAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSAMDQLHCQINR 137
Query: 148 -GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
G+ D L+ + +L+ Y+ GDL AY +F + +DV SWN++I+G V G +A+E
Sbjct: 138 RGLSADSLLCT-TLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAME 196
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
LY+ ME E ++ EVT+V L AC+ D++ G
Sbjct: 197 LYKRMETEGIRRSEVTVVAALGACSHLGDVKEG 229
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 5/219 (2%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+ ++H Q+ D + L A S L A K+FD++P ++ +WN LI
Sbjct: 128 MDQLHCQINRRGLSADSLLCTTLLD--AYSKNGDLISAYKLFDEMPVRDVASWNALIAGL 185
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-HGMFEDDLVIS 157
S + ++ ++ ++ +E T+ + A + + G+ I HG D++++S
Sbjct: 186 VSGNRASEAMELYKRM-ETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYSNDNVIVS 244
Query: 158 NSLIHFYAVCGDLAMAYCVFVM-IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+ I Y+ CG + AY VF GKK VV+WN+MI+GF G +A+E++ ++E +
Sbjct: 245 NAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGI 304
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
KPD+V+ + L+AC +E+G+ V +++ G++ ++
Sbjct: 305 KPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNM 343
>gi|125545042|gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indica Group]
Length = 885
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 110/185 (59%), Gaps = 6/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +FD++ ++ +W T+I AY Q+ +F ++V + + PNEFT+ V+KA A
Sbjct: 503 ASAIFDKMASRDVISWTTMITAYVQHGHGGQALRMFSEMV-SEGFRPNEFTVCSVLKACA 561
Query: 136 RPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R G+ +H M+++D+ I ++L+ YA CG++ A VF M+ +++ ++W S
Sbjct: 562 EEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTS 621
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG+ + G EKAI L+R+M++ V + +T+V +LSAC + L G + + I KN
Sbjct: 622 MISGYAQSGHGEKAIFLFRKMKMRRVFVNNLTIVGLLSACGSLQSLYLGKELHAQIIKNS 681
Query: 251 IKMDL 255
++ +L
Sbjct: 682 MEDNL 686
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 118/221 (53%), Gaps = 7/221 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
++R+HA + + + A+ L + A + F + ARK+FD++P+ ++ +W ++ AY
Sbjct: 368 VRRVHAVAVRSLDSLGTFVANNLIS--AYARFDEVSDARKVFDEMPERSVVSWTAMMNAY 425
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE----DDL 154
+ +F +V S N T ++K+ ++GQ +H ++
Sbjct: 426 LKLGHYGEVVRLFFDMV-GSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNV 484
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ +++ HFYA CGD+A A +F + +DV+SW +MI+ +V+ G +A+ ++ EM E
Sbjct: 485 IVDSAIAHFYAQCGDVASASAIFDKMASRDVISWTTMITAYVQHGHGGQALRMFSEMVSE 544
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+P+E T+ VL ACA+++ + FG + + K K D+
Sbjct: 545 GFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDI 585
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 8/214 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H +L + D + S L T + + A+ +FD +P+ N TW ++I Y+
Sbjct: 570 KQLHCAVLKKMYKNDIHIGSALVT--MYARCGEVFDAQAVFDMMPRRNTITWTSMISGYA 627
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S ++ +F ++ F N T+ ++ A +G+ +H ED+L
Sbjct: 628 QSGHGEKAIFLFRKMKMRR-VFVNNLTIVGLLSACGSLQSLYLGKELHAQIIKNSMEDNL 686
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L+ FY CG+ A + + +D +SW ++ISG+ G +A++ +M +
Sbjct: 687 QIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWD 746
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
VKP+ T L ACAK L++G + + K
Sbjct: 747 GVKPNTYTYSSALKACAKLEALQYGRKIHGFVNK 780
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 17/207 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +HAQ++ + S L + C T YA ++ + +P + +W LI
Sbjct: 671 KELHAQIIKNSMEDNLQIGSTLVWFYCKCGEYT-----YAARILEAMPDRDAISWTALIS 725
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE----- 151
Y++ +++ ++++ PN +T +KA A+ + G+ IHG
Sbjct: 726 GYNNLGHNVEALKSLDDMLWDGVK-PNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDF 784
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ + +SLI Y CG + A VF + + ++V+W +I+GF + G E+A++ M
Sbjct: 785 SNVFVGSSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVIITGFAQNGLCEEALKYMYLM 844
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEF 238
+ E + D+ + VL++C DL++
Sbjct: 845 QQEGHEVDDFVLSTVLTSCG---DLQW 868
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 126/258 (48%), Gaps = 41/258 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP-NLYTWNTLI 95
KQ K H Q++ P S + + AL ++YA + + P ++ +NT I
Sbjct: 2 KQFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTTI 61
Query: 96 RAYSSSDEP---IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
R +S + P + S ++F+++ S PN FT F+ + + V F +G+ HGM
Sbjct: 62 RGFSRARRPGSLLSSVLLFVRMGVLS-LAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIK 120
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS----------------- 190
FE D+ + NS+I FY+VCG L A VF + DVVSWNS
Sbjct: 121 NSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSL 180
Query: 191 --------------MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
MISG+ + G ++A+ L+REM++ + +P+ +V VLSAC++ L
Sbjct: 181 FSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGAL 240
Query: 237 EFGIWVSSHIEKNGIKMD 254
+ G WV +I K +++D
Sbjct: 241 DHGCWVHCYIGKKCVRVD 258
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 7/186 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F ++ + N +WN +I Y+ + +P ++ +F ++ PN L V+ A +
Sbjct: 177 ALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQE-PNSAILVSVLSACS 235
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G +H D ++S +LI YA CG + +A F K+DV ++ +
Sbjct: 236 QLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTA 295
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI-WVSSHIEKN 249
ISG G E+A++L+ +M+ E + PD V+ + VL AC+ +E G + +S + +
Sbjct: 296 AISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVH 355
Query: 250 GIKMDL 255
GI+ +L
Sbjct: 356 GIRPEL 361
>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 106/200 (53%), Gaps = 7/200 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ K++HA +L F+D + S L CALS + S+EYA +F QI +P + +NT+IR
Sbjct: 45 EEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIR 104
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+S + ++ +++++++ P+ FT PFV+KA + V + G IH E
Sbjct: 105 GNVNSMDLEEALLLYVEML-ERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLE 163
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ + N LI Y CG + A VF + +K V SW+S+I + + + L +M
Sbjct: 164 VDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDM 223
Query: 212 EVENV-KPDEVTMVVVLSAC 230
E + +E +V LSAC
Sbjct: 224 SGEGRHRAEESILVSALSAC 243
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 7/205 (3%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
L K+ +IHA + D + + L + ++E+A +F+Q+ + ++ +W
Sbjct: 143 LLVALKEGVQIHAHVFKAGLEVDVFVQNGLIS--MYGKCGAIEHAGVVFEQMDEKSVASW 200
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF- 150
+++I A++S + + M+ + + E L + A +G+ IHG+
Sbjct: 201 SSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILL 260
Query: 151 ----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
E ++V+ SLI Y CG L CVF + K+ S+ MI+G G +A+
Sbjct: 261 RNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVR 320
Query: 207 LYREMEVENVKPDEVTMVVVLSACA 231
++ +M E + PD+V V VLSAC+
Sbjct: 321 VFSDMLEEGLTPDDVVYVGVLSACS 345
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 148 GMFEDDLVISNSLIHFYAVC-----GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
G+F D SN A C G + A +F I + +N+MI G V E
Sbjct: 58 GLFYDSFCGSN----LVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLE 113
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+A+ LY EM ++PD T VL AC+ L+ G+ + +H+ K G+++D+
Sbjct: 114 EALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDV 166
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 110/205 (53%), Gaps = 11/205 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IHA +L DP+ A KL CA+S SL+YA ++F P P+++ NTLIR
Sbjct: 22 KQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLIRGLY 81
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-----QA-IHGMFEDD 153
SD P S + F+++ NS P+ F+ F++KAAA RVG QA +HG+ +
Sbjct: 82 ESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGL-DTH 140
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L + +LI Y CG + A VF + + + ++WN+M++ GG + EL+ M V
Sbjct: 141 LFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPV 200
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEF 238
N+ ++ V+L+ K +LE
Sbjct: 201 RNL----MSWNVMLAGYTKAGELEL 221
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE AR+MF ++P + +W+T+I ++ + ++F F +L PNE +L V
Sbjct: 217 GELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFREL-QRKGMRPNETSLTGV 275
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMI-GKKD 184
+ A A+ G+ +HG E + ++N+L+ Y+ CG++ MA VF I +++
Sbjct: 276 LSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERN 335
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+VSW SM++ G E+AI ++ +ME ++PDE+ + +L AC+ +E G
Sbjct: 336 IVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQG 390
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 37/178 (20%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
+ARK+FD++P+PN WN ++ A
Sbjct: 159 FARKVFDEMPEPNAIAWNAMV------------------------------------TAC 182
Query: 135 ARPVQFRVGQAIHGMFE-DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
R + G+ + + +L+ N ++ Y G+L +A +F+ + KD VSW++MI
Sbjct: 183 CRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIV 242
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
GF G+FE+A +RE++ + ++P+E ++ VLSACA+ LEFG + IEK+G+
Sbjct: 243 GFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGL 300
>gi|296083841|emb|CBI24229.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 19/234 (8%)
Query: 15 PNPTTLT-VNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTF 70
P+ TLT V + R L + ++ K IH +++ + F D + +S L + C
Sbjct: 109 PDSVTLTTVISSCAR----LLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCG---- 160
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE A+++F+QI + N+ +WN++I YS + +F ++ P TL +
Sbjct: 161 -CLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM-DEEGIRPTLTTLSSI 218
Query: 131 IKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A +R V ++G+ IHG E D+ +++SLI Y CG++ A VF + K +V
Sbjct: 219 LMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNV 278
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
VSWN MISG+V+ G + +A+ ++ +M VKPD +T VL AC++ LE G
Sbjct: 279 VSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG 332
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 21/234 (8%)
Query: 37 KQLKRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQP-NLYTWN 92
KQ K IH +++S + S L+ C L + A+ +F I P ++ WN
Sbjct: 20 KQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHL-----FQSAKLVFQTIENPLDITLWN 74
Query: 93 TLIRAYSSS------DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
L+ A + + EP ++ +F ++ S + P+ TL VI + AR + G+ I
Sbjct: 75 GLMAACTKNFIFIEGLEPEKALELFEEMKV-SGFKPDSVTLTTVISSCARLLDLERGKEI 133
Query: 147 H-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
H F D +S++L+ Y CG L MA VF I +K+VVSWNSMI+G+ G
Sbjct: 134 HMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDS 193
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ IEL+R M+ E ++P T+ +L AC++ +L+ G ++ +I +N ++ D+
Sbjct: 194 KSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADI 247
>gi|15228117|ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37310
gi|4056485|gb|AAC98051.1| hypothetical protein [Arabidopsis thaliana]
gi|110741249|dbj|BAF02175.1| hypothetical protein [Arabidopsis thaliana]
gi|330254288|gb|AEC09382.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 132/255 (51%), Gaps = 20/255 (7%)
Query: 21 TVNNGHQRH--PHFLTNQKQLK--RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYA 76
V+ G H HF ++ L ++HA+++ D + ASKL + + A
Sbjct: 19 AVDGGAYGHLIQHFTRHRLPLHVLQLHARIVVFSIKPDNFLASKLIS--FYTRQDRFRQA 76
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-----PNEFTLPFVI 131
+FD+I N +++N L+ AY+S + +F +FL + +S Y P+ ++ V+
Sbjct: 77 LHVFDEITVRNAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVL 136
Query: 132 KAAARPVQFRVGQ--------AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
KA + F +G I G F+ D+ + N +I +Y C ++ A VF + ++
Sbjct: 137 KALSGCDDFWLGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSER 196
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
DVVSWNSMISG+ + G FE ++Y+ M + KP+ VT++ V AC + DL FG+ V
Sbjct: 197 DVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEV 256
Query: 243 SSHIEKNGIKMDLTF 257
+ +N I+MDL+
Sbjct: 257 HKKMIENHIQMDLSL 271
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 97/181 (53%), Gaps = 13/181 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+++H ++ F D + + + +T C ++E ARK+FD++ + ++ +WN++I
Sbjct: 152 RQVHGFVIRGGFDSDVFVGNGMITYYTKC-----DNIESARKVFDEMSERDVVSWNSMIS 206
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFED--- 152
YS S ++ ++ S + PN T+ V +A + G +H M E+
Sbjct: 207 GYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQ 266
Query: 153 -DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL + N++I FYA CG L A +F + +KD V++ ++ISG++ G ++A+ L+ EM
Sbjct: 267 MDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEM 326
Query: 212 E 212
E
Sbjct: 327 E 327
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F ++ L TWN +I ++ + F +++ PN TL ++ +
Sbjct: 319 AMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSR-PNTVTLSSLLPSLT 377
Query: 136 RPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G+ IH ++++ ++ S+I YA G L A VF + +++W +
Sbjct: 378 YSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTA 437
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+I+ + G + A L+ +M+ KPD+VT+ VLSA A D
Sbjct: 438 IITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGD 482
>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
[Brassica oleracea]
Length = 968
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
LK +H L +F + + F + + SL YA ++F I + +WN LI
Sbjct: 410 NLKELHCYSLKQEFVHNNELVANAFVA-SYAKCGSLSYAHRVFCSIRSKTVNSWNALIGG 468
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS S +P S + Q+ +S P+ FT+ ++ A ++ ++G+ +HG+ E
Sbjct: 469 YSQSSDPRLSLDAYFQM-KSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLER 527
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D + SL+ Y CG+L+ A+ +F + K +VSWN+M++G+++ GF E+A+ L+R+M
Sbjct: 528 DSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMV 587
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFG 239
+ V+P E++M+ V AC+ L G
Sbjct: 588 LYGVQPCEISMMSVFGACSLLPSLRLG 614
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 109/200 (54%), Gaps = 15/200 (7%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S S + +R +FD + + NL+ WN +I +YS ++ +F++++ S P+ FT
Sbjct: 128 SMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTF 187
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
P V+KA A + +VG A+HG+ +D+ +SN+L+ FY G ++ A VF ++ +
Sbjct: 188 PCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPE 247
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK----PDEVTMVVVLSACAKKRDLEF 238
+++VSWNSMI F + G E+ L +M ++ + PD T+ VL CA RD E
Sbjct: 248 RNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCA--RDREI 305
Query: 239 GIWVSSHIEKNGIKMDLTFE 258
G+ H G+ M L+ +
Sbjct: 306 GVGKGVH----GLAMKLSLD 321
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 106/199 (53%), Gaps = 12/199 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ T D + ++ L + T S+ A ++F +P+ NL +WN++IR +S +
Sbjct: 206 VHGLVVKTRLVEDVFVSNALVS--FYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDN 263
Query: 102 DEPIQSFMIFLQLVYNS---PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ F++ Q++ + P+ TL V+ AR + VG+ +HG+ + +
Sbjct: 264 GLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKE 323
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+V++N+L+ Y+ CG + A +F + K+VVSWN+M+ GF G K +L R+M
Sbjct: 324 VVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLA 383
Query: 214 --ENVKPDEVTMVVVLSAC 230
+++ DEVT++ + C
Sbjct: 384 GGGDLRADEVTILNAVPVC 402
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 14/199 (7%)
Query: 40 KRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H ++ D + S L+ C L A +FD + L +WNT++
Sbjct: 514 KEVHGLIIRNRLERDSFVYISLLSLYIHCG-----ELSTAHVLFDAMEDKTLVSWNTMVN 568
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFE 151
Y + P ++ +F Q+V P E ++ V A + R+G+ HG + E
Sbjct: 569 GYLQNGFPERALSLFRQMVLYGVQ-PCEISMMSVFGACSLLPSLRLGREAHGYALKCLLE 627
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ I+ S+I YA G + ++ VF + ++ V SWN+M+ G+ G ++AI+L+ EM
Sbjct: 628 DNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEM 687
Query: 212 EVENVKPDEVTMVVVLSAC 230
+ PDE+T + VL+AC
Sbjct: 688 QRTGHCPDELTFLGVLTAC 706
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 95/194 (48%), Gaps = 7/194 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFT 126
S + A+ +F N+ +WNT++ +S++ + ++F + Q++ +E T
Sbjct: 335 SKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVT 394
Query: 127 L----PFVIKAAARP--VQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+ P + + P + ++ +++N+ + YA CG L+ A+ VF I
Sbjct: 395 ILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSI 454
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
K V SWN++I G+ + +++ Y +M+ + PD T+ +LSAC++ + L+ G
Sbjct: 455 RSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGK 514
Query: 241 WVSSHIEKNGIKMD 254
V I +N ++ D
Sbjct: 515 EVHGLIIRNRLERD 528
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 132 KAAARPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+A+ R ++G+ IH + +D V+ +I Y++CG + VF + KK++
Sbjct: 89 QASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNL 148
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
WN++IS + + +E++ +M E+ + PD T V+ ACA +++ G+ V
Sbjct: 149 FQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHG 208
Query: 245 HIEKNGIKMDL 255
+ K + D+
Sbjct: 209 LVVKTRLVEDV 219
>gi|225425734|ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Vitis vinifera]
Length = 597
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 17/231 (7%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T ++ ++H M+ T P++ SKL S+ +YA +F+QIP PNL+ +NT
Sbjct: 42 TQTSEICQVHGSMVKTGLVNVPFTLSKLLA----SSIQDTDYAASIFNQIPSPNLFMFNT 97
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI------- 146
++R YS S P Q+F++F L ++F+ +KA AR + + GQ I
Sbjct: 98 MLRGYSISHHPKQAFVVFKGLRAQQMIL-DQFSFIPTLKACARELAYETGQGIHGVVVRS 156
Query: 147 -HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-DVVSWNSMISGFVEGGFFEKA 204
HG+F + + N+L+HFY VCG + A+ +F I K D+VSWN+++ G+++
Sbjct: 157 GHGLFTN---VKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLGGYLQVPHPTMV 213
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
L+ EM + +K T+ VL A ++ G+ + H K G DL
Sbjct: 214 TCLFGEMCRKGLKFSTTTISSVLCAVGDLGNILGGVSLHGHCIKVGFCSDL 264
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 95/195 (48%), Gaps = 8/195 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H + F D A+ L A + F ++ K+F Q+P+ ++ WN LI Y+ S
Sbjct: 251 LHGHCIKVGFCSDLNVATALIDMYANAGF--IDLGHKIFYQVPKKDVVLWNCLIDGYAKS 308
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVI 156
D +S + + PN TL ++ A A VG I E+ D V+
Sbjct: 309 DLLQESLSLLQLM-KREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVL 367
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+L+ Y CG L A VF + KDV SW +MISG+ G + AI ++ MEVE
Sbjct: 368 GTALVDMYCKCGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGY 427
Query: 217 KPDEVTMVVVLSACA 231
+P+EVT + VL+AC+
Sbjct: 428 RPNEVTFLAVLNACS 442
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Query: 76 ARKMFDQIP-QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
A ++FD+IP + +L +WNTL+ Y P +F ++ F T+ V+ A
Sbjct: 181 AHQLFDEIPPKIDLVSWNTLLGGYLQVPHPTMVTCLFGEMCRKGLKFSTT-TISSVLCAV 239
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
G ++HG F DL ++ +LI YA G + + + +F + KKDVV WN
Sbjct: 240 GDLGNILGGVSLHGHCIKVGFCSDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWN 299
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+I G+ + ++++ L + M+ E VKP+ T+V +LSACA G+ +S+++E+
Sbjct: 300 CLIDGYAKSDLLQESLSLLQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEE 359
Query: 250 GIKMD 254
I +D
Sbjct: 360 QIALD 364
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 106/198 (53%), Gaps = 8/198 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K LK +H+++ + F +P KL A L AR +FD IP+ N+ +N +IR
Sbjct: 49 KTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGL--ARNVFDVIPERNVIFYNVMIR 106
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+Y ++ + ++F +V + + P+ +T P V+KA + R+G +HG +
Sbjct: 107 SYMNNHLYDDALLVFRDMV-SGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLD 165
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+L + N LI Y CG L A CV + KDVVSWNSM++G+ + F+ A+++ REM
Sbjct: 166 LNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREM 225
Query: 212 EVENVKPDEVTMVVVLSA 229
+ KPD TM +L A
Sbjct: 226 DGVRQKPDACTMASLLPA 243
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 6/191 (3%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D + + L ++ ++ Y +MF + + +L +WN +I Y + P +S ++LQ
Sbjct: 233 DACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQ 292
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCG 168
+ P+ T V++A +G+ IH E ++++ NSLI YA CG
Sbjct: 293 M-GKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCG 351
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
L A VF + +DV SW S+IS + G A+ L+ EM+ PD + V +LS
Sbjct: 352 CLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILS 411
Query: 229 ACAKKRDLEFG 239
AC+ L G
Sbjct: 412 ACSHSGLLNEG 422
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%)
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F ++ + L+ YA G+ +A VF +I +++V+ +N MI ++ ++ A+ ++R
Sbjct: 63 FHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFR 122
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+M PD T VL AC+ +L G+ + + K G+ ++L
Sbjct: 123 DMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNL 168
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 29/176 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE A+++FD++ ++ +W +LI AY + + + +F ++ NS P+ +
Sbjct: 351 GCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEM-QNSGQSPDSIAFVAI 409
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + G+ DD I+ + HF C+ ++G+
Sbjct: 410 LSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFA----------CLVDLLGRS------- 452
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G ++A + ++M + KP+E +LS+C +++ GI + +
Sbjct: 453 --------GRVDEAYNIIKQMPM---KPNERVWGALLSSCRVYSNMDIGILAADKL 497
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 67/283 (23%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N + L +IH + D Y KL CA+S +L YAR++ P+P+ + +NTL
Sbjct: 9 NLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTL 68
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-----QAIHGM 149
+R YS SDEP S +F++++ FP+ F+ FVIKA R G QA+
Sbjct: 69 VRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHG 128
Query: 150 FEDDLVISNSLIHFYAVCG-------------------------------DLAMAYCVFV 178
E L + +LI Y CG D+A A +F
Sbjct: 129 LESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFD 188
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIEL------------------------------- 207
+ ++ SWN M++G+++ G E A +
Sbjct: 189 KMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLY 248
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+RE++ + P+EV++ VLSAC++ EFG + +EK G
Sbjct: 249 FRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 291
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE A+++F ++P + +W+T+I + + +SF+ F +L + PNE +L V
Sbjct: 209 GELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFREL-QRAGMSPNEVSLTGV 267
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVF-VMIGKKD 184
+ A ++ F G+ +HG E + ++N+LI Y+ CG++ MA VF M K+
Sbjct: 268 LSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC 327
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+VSW SMI+G G E+A+ L+ EM V PD ++ + +L AC+ +E G
Sbjct: 328 IVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEG 382
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 67/283 (23%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N + L +IH + D Y KL CA+S +L YAR++ P+P+ + +NTL
Sbjct: 17 NLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTL 76
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-----QAIHGM 149
+R YS SDEP S +F++++ FP+ F+ FVIKA R G QA+
Sbjct: 77 VRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHG 136
Query: 150 FEDDLVISNSLIHFYAVCG-------------------------------DLAMAYCVFV 178
E L + +LI Y CG D+A A +F
Sbjct: 137 LESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFD 196
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIEL------------------------------- 207
+ ++ SWN M++G+++ G E A +
Sbjct: 197 KMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLY 256
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+RE++ + P+EV++ VLSAC++ EFG + +EK G
Sbjct: 257 FRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 299
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE A+++F ++P + +W+T+I + + +SF+ F +L + PNE +L V
Sbjct: 217 GELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFREL-QRAGMSPNEVSLTGV 275
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVF-VMIGKKD 184
+ A ++ F G+ +HG E + ++N+LI Y+ CG++ MA VF M K+
Sbjct: 276 LSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC 335
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+VSW SMI+G G E+A+ L+ EM V PD ++ + +L AC+ +E G
Sbjct: 336 IVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEG 390
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 11/221 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H ++ F + Y + L S A ++FD++ ++ +W +I Y
Sbjct: 54 RQVHGVIIKMGFVCNIYVENSLVH--FYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYV 111
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ ++ +FL++ PN T V+ A R VG+ IHG+ F L
Sbjct: 112 RAGLFDEAVGLFLRMDVE----PNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGL 167
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+SN+L+ Y CG L A VF + +KD+VSW S+ISG V+ ++A+EL+++M+
Sbjct: 168 EVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSS 227
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++PD + + VLSACA+ L++G WV HI++ IK D+
Sbjct: 228 GIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDI 268
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
+N L+ Y+ D P +F+++ ++V + + P+ FT P V+K+ A+ V G+ +HG+
Sbjct: 2 FNALVSGYAIGDRPKTAFLVYRRIVKDG-FLPDMFTFPAVLKSCAKFVGIGEGRQVHGVI 60
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
F ++ + NSL+HFY+VC A VF + +DVVSW +ISG+V G F++A+
Sbjct: 61 IKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAV 120
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
L+ M+VE P+ T V VL AC +K L G
Sbjct: 121 GLFLRMDVE---PNAATFVSVLVACGRKGYLSVG 151
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 89/166 (53%), Gaps = 6/166 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L A+++FD++ + ++ +W ++I + P ++ +F Q + +S P+ L V
Sbjct: 181 GCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELF-QDMQSSGIEPDGIILTSV 239
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A AR G+ +H + D+ I +++ YA CG + M+ +F + K+V
Sbjct: 240 LSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNV 299
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++WN++++G G K +EL+ EM ++P+EVT + +L+AC
Sbjct: 300 LTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACC 345
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 10/249 (4%)
Query: 19 TLTVNNGHQRHPHFLTNQK---QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY 75
T +++N + R L K Q K++H+Q ++ +P KLF + Y
Sbjct: 27 TESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSY 86
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A K+F +IP+P++ WN +I+ +S D + ++L ++ P+ T PF++
Sbjct: 87 AYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNML-KEGVTPDSHTFPFLLNGLK 145
Query: 136 RPV-QFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
R G+ +H +L + N+L+ Y++CG + MA VF K+DV SWN
Sbjct: 146 RDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWN 205
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
MISG+ +E++IEL EME V P VT+++VLSAC+K +D + V ++ +
Sbjct: 206 LMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSEC 265
Query: 250 GIKMDLTFE 258
+ L E
Sbjct: 266 KTEPSLRLE 274
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 48/271 (17%)
Query: 24 NGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMF 80
NG +R L K+L H ++ + Y + K+++ C L ++ AR +F
Sbjct: 142 NGLKRDGGALACGKKL---HCHVVKFGLGSNLYVQNALVKMYSLCGL-----MDMARGVF 193
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
D+ + ++++WN +I Y+ E +S + +++ N P TL V+ A ++
Sbjct: 194 DRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERN-LVSPTSVTLLLVLSACSKVKDK 252
Query: 141 RVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
+ + +H E L + N+L++ YA CG++ +A +F + +DV+SW S++ G+
Sbjct: 253 DLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGY 312
Query: 196 VE-------------------------------GGFFEKAIELYREMEVENVKPDEVTMV 224
VE G F +++E++REM+ + PDE TMV
Sbjct: 313 VERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMV 372
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
VL+ACA LE G W+ ++I+KN IK D+
Sbjct: 373 SVLTACAHLGSLEIGEWIKTYIDKNKIKNDV 403
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 6/165 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+L+ AR FDQ+P + +W +I Y + +S IF ++ ++ P+EFT+ V
Sbjct: 316 GNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREM-QSAGMIPDEFTMVSV 374
Query: 131 IKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A +G+ I ++D+V+ N+LI Y CG A VF + ++D
Sbjct: 375 LTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDK 434
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+W +M+ G G ++AI+++ +M+ +++PD++T + VLSAC
Sbjct: 435 FTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSAC 479
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 17/232 (7%)
Query: 17 PTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSL 73
P ++T+ L + ++ IH +++++ F D + +S L + C L
Sbjct: 205 PNSVTITTAISSCARLLDLNRGME-IHEELINSGFLLDSFISSALVDMYGKCG-----HL 258
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A ++F+Q+P+ + WN++I Y + I +F ++ YN P TL +I
Sbjct: 259 EMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRM-YNEGVKPTLTTLSSLIMV 317
Query: 134 AARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+R + G+ +HG + D+ I++SL+ Y CG + +A +F +I K VVSW
Sbjct: 318 CSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSW 377
Query: 189 NSMISGFV-EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
N MISG+V EG FE A+ L+ EM V+PD +T VL+AC++ LE G
Sbjct: 378 NVMISGYVAEGKLFE-ALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKG 428
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 14/224 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K IH ++ T D S L + C ++ E A +F+++P+ ++ WNT+I
Sbjct: 126 KMIHTCLVKTGLMMDIVVGSSLVGMYAKC-----NAFEKAIWLFNEMPEKDVACWNTVIS 180
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
Y S ++ F L+ + PN T+ I + AR + G IH F
Sbjct: 181 CYYQSGNFKEALEYF-GLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFL 239
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D IS++L+ Y CG L MA VF + KK VV+WNSMISG+ G I+L++ M
Sbjct: 240 LDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRM 299
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E VKP T+ ++ C++ L G +V + +N I+ D+
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDV 343
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 117/228 (51%), Gaps = 16/228 (7%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQP-NLYTWN 92
KQ K IH ++++ D + L + C L ++A+ +FD + P + WN
Sbjct: 20 KQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHL-----YDHAKCVFDNMENPCEISLWN 74
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
L+ Y+ + +++ +F +L++ PY P+ +T P V+KA ++ +G+ IH
Sbjct: 75 GLMAGYTKNYMYVEALELFEKLLH-YPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLV 133
Query: 152 D-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
D+V+ +SL+ YA C A +F + +KDV WN++IS + + G F++A+E
Sbjct: 134 KTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALE 193
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ M +P+ VT+ +S+CA+ DL G+ + + +G +D
Sbjct: 194 YFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLD 241
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 12/200 (6%)
Query: 47 LSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQ 106
+ +D F + S L+ C +E A +F IP+ + +WN +I Y + + +
Sbjct: 339 IQSDVFINS-SLMDLYFKCG-----KVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFE 392
Query: 107 SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLI 161
+ +F ++ S P+ T V+ A ++ G+ IH + +++ V+ +L+
Sbjct: 393 ALGLFSEM-RKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALL 451
Query: 162 HFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV 221
YA CG + A+ VF + K+D+VSW SMI+ + G A+EL+ EM N+KPD V
Sbjct: 452 DMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRV 511
Query: 222 TMVVVLSACAKKRDLEFGIW 241
T + +LSAC ++ G +
Sbjct: 512 TFLAILSACGHAGLVDEGCY 531
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF-VMIGKK 183
+++A + G+ IH ++D+ + +LI+ Y C A CVF M
Sbjct: 9 LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPC 68
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
++ WN +++G+ + + +A+EL+ ++ +KPD T VL AC G +
Sbjct: 69 EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMI 128
Query: 243 SSHIEKNGIKMDLT 256
+ + K G+ MD+
Sbjct: 129 HTCLVKTGLMMDIV 142
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 10/249 (4%)
Query: 19 TLTVNNGHQRHPHFLTNQK---QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY 75
T +++N + R L K Q K++H+Q ++ +P KLF + Y
Sbjct: 27 TESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSY 86
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A K+F +IP+P++ WN +I+ +S D + ++L ++ P+ T PF++
Sbjct: 87 AYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNML-KEGVTPDSHTFPFLLNGLK 145
Query: 136 RPV-QFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
R G+ +H +L + N+L+ Y++CG + MA VF K+DV SWN
Sbjct: 146 RDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWN 205
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
MISG+ +E++IEL EME V P VT+++VLSAC+K +D + V ++ +
Sbjct: 206 LMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSEC 265
Query: 250 GIKMDLTFE 258
+ L E
Sbjct: 266 KTEPSLRLE 274
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 48/271 (17%)
Query: 24 NGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMF 80
NG +R L K+L H ++ + Y + K+++ C L ++ AR +F
Sbjct: 142 NGLKRDGGALACGKKL---HCHVVKFGLGSNLYVQNALVKMYSLCGL-----MDMARGVF 193
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
D+ + ++++WN +I Y+ E +S + +++ N P TL V+ A ++
Sbjct: 194 DRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERN-LVSPTSVTLLLVLSACSKVKDK 252
Query: 141 RVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
+ + +H E L + N+L++ YA CG++ +A +F + +DV+SW S++ G+
Sbjct: 253 DLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGY 312
Query: 196 VE-------------------------------GGFFEKAIELYREMEVENVKPDEVTMV 224
VE G F +++E++REM+ + PDE TMV
Sbjct: 313 VERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMV 372
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
VL+ACA LE G W+ ++I+KN IK D+
Sbjct: 373 SVLTACAHLGSLEIGEWIKTYIDKNKIKNDV 403
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 6/165 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+L+ AR FDQ+P + +W +I Y + +S IF ++ ++ P+EFT+ V
Sbjct: 316 GNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREM-QSAGMIPDEFTMVSV 374
Query: 131 IKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A +G+ I ++D+V+ N+LI Y CG A VF + ++D
Sbjct: 375 LTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDK 434
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+W +M+ G G ++AI+++ +M+ +++PD++T + VLSAC
Sbjct: 435 FTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSAC 479
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 101/190 (53%), Gaps = 9/190 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPF 129
S+L+YA +F IP P N L+R +S P + ++L L N FP + F+ P
Sbjct: 63 SALDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNG--FPLDRFSFPP 120
Query: 130 VIKAAARPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
++KA ++ +G IHG+ F D I ++LI YA CG + A +F + +
Sbjct: 121 LLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHR 180
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
DVV+WN MI G+ + ++ ++LY EM+ +PD + + VLSACA +L +G +
Sbjct: 181 DVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIH 240
Query: 244 SHIEKNGIKM 253
I+ NG ++
Sbjct: 241 QFIKDNGFRV 250
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 100/181 (55%), Gaps = 9/181 (4%)
Query: 67 LSTFSSL---EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
LS ++ L + AR +FD++ + +L W+ +I Y+ S +P+++ +F ++ P+
Sbjct: 290 LSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEM-QRRRIVPD 348
Query: 124 EFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFV 178
+ T+ VI A A + IH F L I+N+LI YA CG+L A VF
Sbjct: 349 QITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFE 408
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+ +K+V+SW+SMI+ F G + AI L+ M+ +N++P+ VT + VL AC+ +E
Sbjct: 409 NMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEE 468
Query: 239 G 239
G
Sbjct: 469 G 469
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 39/236 (16%)
Query: 51 FFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMI 110
F DP+ S L A + AR +FD++ ++ TWN +I YS + +
Sbjct: 147 FHADPFIQSALIAMYA--ACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKL 204
Query: 111 FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYA 165
+ ++ S P+ L V+ A A G+AIH +D+ I SL++ YA
Sbjct: 205 YEEM-KTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYA 263
Query: 166 VCGDLAMAYCV-------------------------------FVMIGKKDVVSWNSMISG 194
CG + +A V F + +KD+V W++MISG
Sbjct: 264 NCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISG 323
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ E +A++L+ EM+ + PD++TM+ V+SACA L W+ ++ +KNG
Sbjct: 324 YAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNG 379
>gi|302788029|ref|XP_002975784.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
gi|300156785|gb|EFJ23413.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
Length = 590
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 16/227 (7%)
Query: 40 KRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++HA + +++F +D S ++ C +LE ARK+F+++ + ++ +W+T+I
Sbjct: 61 KKVHAYISASEFKWDISLQTSLVNMYAKCG-----NLEGARKVFNRLERKDVISWSTMIS 115
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----E 151
AY+ S ++ I+ + + PN T VI A G+ +HG E
Sbjct: 116 AYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGRQVHGRLVSLGLE 175
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ + ++L+ Y CG+L A F + K+DV+ WN M+S + E G ++ IE Y M
Sbjct: 176 TDVAVGSALVQLYVKCGNLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIEAYDAM 235
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+VE P+ VT VL AC+ DL G V S I +G++ D+T E
Sbjct: 236 DVE---PNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTME 279
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 101/180 (56%), Gaps = 7/180 (3%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+ Q N+Y+W+ +I AY+ + ++F++F + + + PN T V+ A + +
Sbjct: 1 MQQKNVYSWSMMIGAYAQNGRRNEAFLLF-ERMESEGIRPNAVTCLHVLGACSCQNELPF 59
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ +H F+ D+ + SL++ YA CG+L A VF + +KDV+SW++MIS + +
Sbjct: 60 GKKVHAYISASEFKWDISLQTSLVNMYAKCGNLEGARKVFNRLERKDVISWSTMISAYNQ 119
Query: 198 GGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
G +AIE+YR ME E +V+P+ VT V V+ AC D+ G V + G++ D+
Sbjct: 120 SGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGRQVHGRLVSLGLETDVA 179
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 68 STFSSLEYARKMFD--QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+ +LE A+++F + + ++ W +I +Y+ + ++ ++ + + + PN
Sbjct: 320 AACGNLEAAKRVFGSRRDERRDVVFWTAMIASYAQAGRGEEALALY-KTMLSEEIKPNSV 378
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T V+ A + G+ IH E D+ + NSL+ YA CG L A+ F I
Sbjct: 379 TYTSVLSACSSLGNILEGRKIHSSLEGKAEELDVAVQNSLLSLYARCGSLRDAWSCFAKI 438
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+DV SW M++ F G +A+EL REME+ V PD VT VL AC+ + LE G
Sbjct: 439 HNRDVFSWTGMVAAFAHHGHSARALELVREMELCGVSPDAVTFQSVLHACSHEGSLERG- 497
Query: 241 WVS 243
W S
Sbjct: 498 WAS 500
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 113/262 (43%), Gaps = 52/262 (19%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+++H +++S D S +L+ C +LE A+K FD++ + ++ WN ++
Sbjct: 163 RQVHGRLVSLGLETDVAVGSALVQLYVKCG-----NLEDAKKAFDRVEKRDVLCWNFMLS 217
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH--------- 147
AYS P Q + + PN T V+ A + GQ +H
Sbjct: 218 AYSERGSPQQVIEAYDAM----DVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLE 273
Query: 148 -----------------------------GMFEDDLVISNSLIHFYAVCGDLAMAYCVF- 177
G + D+V +L++ YA CG+L A VF
Sbjct: 274 TDMTMETSLLSLYIKCRSLKSACQVFEAMGKKDTDVVTDTALLNMYAACGNLEAAKRVFG 333
Query: 178 -VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
++DVV W +MI+ + + G E+A+ LY+ M E +KP+ VT VLSAC+ ++
Sbjct: 334 SRRDERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSLGNI 393
Query: 237 EFGIWVSSHIEKNGIKMDLTFE 258
G + S +E ++D+ +
Sbjct: 394 LEGRKIHSSLEGKAEELDVAVQ 415
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+K+V SW+ MI + + G +A L+ ME E ++P+ VT + VL AC+ + +L FG
Sbjct: 3 QKNVYSWSMMIGAYAQNGRRNEAFLLFERMESEGIRPNAVTCLHVLGACSCQNELPFGKK 62
Query: 242 VSSHIEKNGIKMDLTFE 258
V ++I + K D++ +
Sbjct: 63 VHAYISASEFKWDISLQ 79
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 7/226 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L +Q + +HA ++ + F D + + + L+ AR+MFD++P ++ TW
Sbjct: 100 LGKVEQGRIVHAHLVDS-HFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWT 158
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
LI +S ++ P + ++F Q++ PN FTL ++KA+ G +H
Sbjct: 159 ALIAGFSQNNRPRDALLLFPQML-RLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLK 217
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
++ + + ++L+ YA CG + A F + K VSWN++ISG G E A+ L
Sbjct: 218 YGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHL 277
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
+M+ +N +P T V SACA LE G WV +H+ K+G+K+
Sbjct: 278 LWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKL 323
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 96/188 (51%), Gaps = 6/188 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ A+ FD +P + +WN LI ++ E + + ++ + + P FT V
Sbjct: 240 MDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKN-FQPTHFTYSSVFS 298
Query: 133 AAARPVQFRVGQAIHG-MFEDDL----VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G+ +H M + L I N+L+ YA G + A VF + K DVVS
Sbjct: 299 ACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVS 358
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN+M++G + G ++ ++ + +M ++P+E++ + VL+AC+ L+ G++ ++
Sbjct: 359 WNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK 418
Query: 248 KNGIKMDL 255
K ++ D+
Sbjct: 419 KYKVEPDV 426
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 89/211 (42%), Gaps = 40/211 (18%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q K +HA M+ + + + L A + S++ A+++FD++ +P++ +WNT++
Sbjct: 307 EQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKA--GSIDDAKRVFDRLVKPDVVSWNTMLT 364
Query: 97 A---YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
+ E + F L++ PNE + V+ A + H D+
Sbjct: 365 GCAQHGLGKETLDRFEQMLRIGIE----PNEISFLCVLTACS-----------HSGLLDE 409
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFV-MIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ L+ Y V D+ Y FV ++G+ G ++A REM
Sbjct: 410 GLYYFELMKKYKVEPDVPH-YVTFVDLLGRV---------------GLLDRAERFIREMP 453
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+E P +L AC +++E G++ +
Sbjct: 454 IE---PTAAVWGALLGACRMHKNMELGVYAA 481
>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 755
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 111/218 (50%), Gaps = 8/218 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +H Q+L F+ D + + L ++ A +MF++ ++ W +I
Sbjct: 280 RCLHGQILRAGFYLDAHVETSLIV--VYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLV 337
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
+ ++ +F Q++ P+ T+ VI A A+ + +G +I G D+
Sbjct: 338 QNGSADKALAVFRQML-KFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDV 396
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
NSL+ YA CG L + VF M+ ++D+VSWN+M++G+ + G+ +A+ L+ EM +
Sbjct: 397 ATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSD 456
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
N PD +T+V +L CA L G W+ S + +NG++
Sbjct: 457 NQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLR 494
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 100/193 (51%), Gaps = 6/193 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++EY+RK+FD + +L +WN+LI AY+ I ++ L+ + + T V
Sbjct: 208 GNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGN-ICEVLLLLKTMRLQGFEAGPQTFGSV 266
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ AA + ++G+ +HG F D + SLI Y G + +A+ +F KDV
Sbjct: 267 LSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDV 326
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V W +MISG V+ G +KA+ ++R+M VKP TM V++ACA+ G + +
Sbjct: 327 VLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGY 386
Query: 246 IEKNGIKMDLTFE 258
I + + +D+ +
Sbjct: 387 ILRQELPLDVATQ 399
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 5/219 (2%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++L + D Y AS L A F + ARK+FD +P+ N+ W T+I YS +
Sbjct: 83 LHQRILVSGLSLDAYIASSLINFYA--KFGFADVARKVFDYMPERNVVPWTTIIGCYSRT 140
Query: 102 DEPIQSFMIFLQLVYNS--PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS 159
++F +F ++ P +L F + A VQ G AI F D+ +SNS
Sbjct: 141 GRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAH-VQCLHGCAILYGFMSDINLSNS 199
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
+++ Y CG++ + +F + +D+VSWNS+IS + + G + + L + M ++ +
Sbjct: 200 MLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAG 259
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
T VLS A + +L+ G + I + G +D E
Sbjct: 260 PQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVE 298
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 96/189 (50%), Gaps = 7/189 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ + +FD + + +L +WN ++ Y+ + ++ +F ++ ++ P+ T+ +++
Sbjct: 412 LDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQT-PDSITIVSLLQ 470
Query: 133 AAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A Q +G+ IH + +++ SL+ Y CGDL A F + D+VS
Sbjct: 471 GCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVS 530
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W+++I G+ G E A+ Y + +KP+ V + VLS+C+ +E G+ + +
Sbjct: 531 WSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMT 590
Query: 248 KN-GIKMDL 255
K+ GI DL
Sbjct: 591 KDFGIAPDL 599
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 115/197 (58%), Gaps = 7/197 (3%)
Query: 59 SKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117
+KL C S T SS+ YAR +F+ + +P++ +N++ R YS P++ F +F++++ +
Sbjct: 64 AKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILED 123
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAM 172
P+ +T P ++KA A G+ +H + +D++ + +LI+ Y C D+
Sbjct: 124 G-ILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDS 182
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
A VF I + VV +N+MI+G+ +A+ L+REM+ + +KP+E+T++ VLS+CA
Sbjct: 183 ARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCAL 242
Query: 233 KRDLEFGIWVSSHIEKN 249
L+ G W+ + +K+
Sbjct: 243 LGSLDLGKWIHKYAKKH 259
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 103/198 (52%), Gaps = 14/198 (7%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++T C ++ AR +FD+I +P + +N +I Y+ + P ++ +F ++ Y
Sbjct: 173 MYTEC-----EDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREM--QGKY 225
Query: 121 F-PNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAY 174
PNE TL V+ + A +G+ IH F + ++ +LI +A CG L A
Sbjct: 226 LKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAV 285
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
+F + KD +W++MI + G EK++ ++ M ENV+PDE+T + +L+AC+
Sbjct: 286 SIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTG 345
Query: 235 DLEFG-IWVSSHIEKNGI 251
+E G + S + K GI
Sbjct: 346 RVEEGRKYFSQMVSKFGI 363
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 134/289 (46%), Gaps = 78/289 (26%)
Query: 33 LTNQKQLKRIHAQML------STDFFFDPYS--ASKLFTPCALSTFSSLEYARKMFDQIP 84
L N K LK+IHA M+ + +F D ++ L P A T ++ YA ++F QIP
Sbjct: 12 LPNLKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTN--YAHQLFAQIP 69
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
QP+ + +N +IR S S P+++ ++ ++ + + +T PFV+KA R G
Sbjct: 70 QPDTFMYNVMIRGSSQSPNPLRAISLYTEM-HRHFVKGDSYTFPFVLKACTRLFWVNTGS 128
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVC-------------------------------G 168
A+HGM F + V+ N+L+ F+A C G
Sbjct: 129 AVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRG 188
Query: 169 DLAMAYCVF------------VMIGK-------------------KDVVSWNSMISGFVE 197
DL +A +F VMI KDVVSWN+MI+G+V
Sbjct: 189 DLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVV 248
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G ++A+EL+ EM V PDEVT++ +LSACA DLE G V + +
Sbjct: 249 CGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKV 297
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E AR +FD+ P ++ +WN +I Y Q+ +F ++ + FP+E TL +
Sbjct: 219 GEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMC-RAGVFPDEVTLLSL 277
Query: 131 IKAAARPVQFRVGQAIHG------MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+ A A G+ +H M + ++ N+LI YA CG++ + VF I KD
Sbjct: 278 LSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVFWSITDKD 337
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
V+SWNS+I G G ++++ L++ M+ + P+E+T V VL AC+ +++ G
Sbjct: 338 VISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEG 392
>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 604
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 7/219 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ K++HA +L F+D + S L CALS + S+EYA +F QI +P + +NT+IR
Sbjct: 44 EEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIR 103
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+S ++ +++++++ P+ FT PFV+KA + + G IH E
Sbjct: 104 GNVNSMNLEEALLLYVEML-ERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLE 162
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ + N LI+ Y CG + A VF + +K V SW+S+I + + + L +M
Sbjct: 163 GDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDM 222
Query: 212 EVENV-KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
E + +E +V LSAC FG + + +N
Sbjct: 223 SGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRN 261
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 7/205 (3%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
L K+ +IHA + D + + L ++E+A +F+Q+ + ++ +W
Sbjct: 142 LLGALKEGVQIHAHVFKAGLEGDVFVQNGLIN--MYGKCGAIEHASVVFEQMDEKSVASW 199
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF- 150
+++I A++S + + M+ + + E L + A G+ IHG+
Sbjct: 200 SSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILL 259
Query: 151 ----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
E ++ + SLI Y G L CVF + +K+ S+ +I+G G +A+
Sbjct: 260 RNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALS 319
Query: 207 LYREMEVENVKPDEVTMVVVLSACA 231
++ +M E + PD+V V VLSAC+
Sbjct: 320 VFSDMLEEGLAPDDVVYVGVLSACS 344
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 148 GMFEDDLVISNSLIHFYAVC-----GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
G+F D SN A C G + A +F I + +N+MI G V E
Sbjct: 57 GLFYDSFCGSN----LVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLE 112
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+A+ LY EM ++PD T VL AC+ L+ G+ + +H+ K G++ D+
Sbjct: 113 EALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDV 165
>gi|297791795|ref|XP_002863782.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309617|gb|EFH40041.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 590
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 121/240 (50%), Gaps = 11/240 (4%)
Query: 28 RHPHFLTNQKQLKR----IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI 83
R FL + KR +HA ++++ + S S+ + YARK+FDQ+
Sbjct: 10 RRLKFLLSASNYKRHIAQVHAFVITSGNLLNGSSISRDLVAL-YGRIGEISYARKVFDQL 68
Query: 84 PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG 143
PQ ++ +N++I YS + P + ++ Q++ + P+ T IKA + G
Sbjct: 69 PQRSVSVYNSMIVVYSRGNNPNEVLKLYDQMI-SERVKPDSSTFTITIKACLSGMALEKG 127
Query: 144 QAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
+A+ +++D+ + +S+++ Y CG + A +F + K+DV+ W +M++GF +G
Sbjct: 128 EAVWSKAVEFGYKNDVFVCSSVLNLYMKCGKMNEAEVLFRKMTKRDVICWTTMVTGFAQG 187
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
G KA+E YREM+ E D V M+ +L A D + G V ++ + G+ M+ E
Sbjct: 188 GKSMKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDPKMGRSVHGYLIRTGLPMNTVVE 247
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 11/201 (5%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F S L+ C + A +F ++ + ++ W T++ ++ + +++ +
Sbjct: 144 FVCSSVLNLYMKCG-----KMNEAEVLFRKMTKRDVICWTTMVTGFAQGGKSMKAVEFYR 198
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVC 167
++ N + + + +++A+ ++G+++HG + V+ SL+ YA
Sbjct: 199 EM-QNEGFGRDRVVMLGLLQASGDLGDPKMGRSVHGYLIRTGLPMNTVVETSLVDMYAKV 257
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G + +A+ +F + K V+W S+ISGF + G A E EM+ + D T+V VL
Sbjct: 258 GFIEVAFRMFSRMMFKTAVTWGSLISGFAQNGLANYAFEAVLEMQSLGFQLDLATLVGVL 317
Query: 228 SACAKKRDLEFGIWVSSHIEK 248
AC++ L GI V +I K
Sbjct: 318 VACSQVGSLTTGISVHCYILK 338
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 20/226 (8%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + K + +H ++ T + + L A F +E A +MF ++ TW
Sbjct: 222 LGDPKMGRSVHGYLIRTGLPMNTVVETSLVDMYAKVGF--IEVAFRMFSRMMFKTAVTWG 279
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF-TLPFVIKAAARPVQFRVGQAIHGMFE 151
+LI ++ + +F L++ S F + TL V+ A ++ G ++H
Sbjct: 280 SLISGFAQNGLANYAFEAVLEM--QSLGFQLDLATLVGVLVACSQVGSLTTGISVHCYIL 337
Query: 152 D----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
D + + +L+ Y+ CG L+ + +F +G+KD+V WN+MIS + +
Sbjct: 338 KRHVLDRITATALMDMYSKCGALSSSRVIFEHVGRKDLVCWNTMIS----------FVSM 387
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGI-WVSSHIEKNGIK 252
+ +M N++PD T +LSA + +E G W S I K I+
Sbjct: 388 FLKMTETNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYNIQ 433
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 111/209 (53%), Gaps = 27/209 (12%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+IH+ + DP +++ C ++ YA ++FD IP P+++ WNT+I+
Sbjct: 22 QLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTMIKG 81
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI------HGMFE 151
YS P ++L L+ S P+ FT PF +K R + + G+ + HG F+
Sbjct: 82 YSKISHPENGVSMYL-LMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHG-FD 139
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+L + + IH +++CG + +A+ VF M +VV+WN M+SG+
Sbjct: 140 SNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGY---------------- 183
Query: 212 EVENVKPDEVT-MVVVLSACAKKRDLEFG 239
VK +++ M++VLSAC+K +DLE+G
Sbjct: 184 --NRVKQFKISKMLLVLSACSKLKDLEWG 210
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 95/194 (48%), Gaps = 28/194 (14%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+F+ C + ++ A K+FD + TWN ++ Y+ ++ F I L+
Sbjct: 151 MFSLCGI-----VDLAHKVFDMGDACEVVTWNIMLSGYNR----VKQFKISKMLL----- 196
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
V+ A ++ G+ I +V H +A CG++ A VF +
Sbjct: 197 ---------VLSACSKLKDLEWGKHIFKYINGGIVE-----HMFAACGEMDEAQGVFDNM 242
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+DVVSW +MI G++ F A+ L+REM++ NVKPDE TMV +L ACA LE G
Sbjct: 243 KTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGE 302
Query: 241 WVSSHIEKNGIKMD 254
WV + I+KN K D
Sbjct: 303 WVKTCIDKNSNKND 316
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 11/183 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+F C ++ A+ +FD + ++ +W +I Y + I + +F ++ S
Sbjct: 225 MFAACG-----EMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQM-SNV 278
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYC 175
P+EFT+ ++ A A +G+ + + +D + N+L+ Y CG++ A
Sbjct: 279 KPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKK 338
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + +KD +W +MI G G E+A+ ++ M +V PDE+T + VL AC +
Sbjct: 339 VFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCACMVDKG 398
Query: 236 LEF 238
F
Sbjct: 399 KSF 401
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 150 FEDDLVISNSLIHFYAV--CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
D + N +I F G++ A+ VF I + WN+MI G+ + E + +
Sbjct: 35 LSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSM 94
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
Y M N+KPD T L + L+ G + +H K+G +L
Sbjct: 95 YLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFDSNL 142
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 118/209 (56%), Gaps = 10/209 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
TN + LK++HA ++ +L A+ +++YA ++F QI QP+++ WNT
Sbjct: 24 TNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFMWNT 83
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IR + + +P + ++ Q+ N P++FT FV+KA + ++G IHG
Sbjct: 84 MIRGSAQTLKPATAVSLYTQM-ENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKS 142
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F+ + + N+LI+F+A CGDLA A +F K++VV W+++ +G+ G + A +L+
Sbjct: 143 GFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLF 202
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLE 237
EM ++ D V+ V+++A AK ++E
Sbjct: 203 DEMPMK----DLVSWNVMITAYAKHGEME 227
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 7/172 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + +E ARK+FD++P+ ++ TWN +I Y S ++ +F + + P++
Sbjct: 219 AYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMF-DAMRDLGQRPDDV 277
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED------DLVISNSLIHFYAVCGDLAMAYCVFVM 179
T+ ++ A+A +G+ IH D +++SN+LI YA CG + A VF
Sbjct: 278 TMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQG 337
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ KKD SWNS+I G G E++I L++EM +KP+E+T V VL AC+
Sbjct: 338 MRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACS 389
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 8/201 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYA--RKMFDQIPQPNLYTWNTLIRAYS 99
++ QM + D ++ S + C ++ L + K+ Q N + NTLI ++
Sbjct: 100 LYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHA 159
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-QAIHGMFEDDLVISN 158
+ + + +F + T + AR + V Q M DLV N
Sbjct: 160 NCGDLATARALFDASAKREVVPWSALTAGY-----ARRGKLDVARQLFDEMPMKDLVSWN 214
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
+I YA G++ A +F + KKDVV+WN+MI+G+V ++A+E++ M +P
Sbjct: 215 VMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRP 274
Query: 219 DEVTMVVVLSACAKKRDLEFG 239
D+VTM+ +LSA A DLE G
Sbjct: 275 DDVTMLSILSASADLGDLEIG 295
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
V G + A+ +F I + D+ WN+MI G + A+ LY +ME V+PD+ T
Sbjct: 59 VSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSF 118
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIK 252
VL AC K ++ G + + K+G +
Sbjct: 119 VLKACTKLSWVKLGFGIHGKVLKSGFQ 145
>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
Length = 492
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 14/222 (6%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q K+ HAQ+L F + + L S L+ ARK+FD++ + N+++WN LI +
Sbjct: 24 QAKQTHAQILVHGFIPNITLQTDLLL--VYSKCGVLQDARKVFDKMVERNMHSWNILIAS 81
Query: 98 YSSSD---EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
Y+ + + + F FL++ + P+ FTLP V KA A +G+ +H
Sbjct: 82 YAHNCFFYDALGVFDSFLKMGFR----PDHFTLPPVFKACAGIGDSYLGKMLHSWVIRIG 137
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
FE+ +V+ +S++ FYA CG L A+ FV + +D V WN MI G + FF A+E +R
Sbjct: 138 FEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWNLMIVGLGKACFFRDALECFR 197
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+M E VK D T+ +LS C + DL G + + KN I
Sbjct: 198 DMLSEGVKMDSRTVPSILSVCGGEGDLMKGKEIHGQVVKNQI 239
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Query: 126 TLPFVIKAAARPVQFRVGQAIHG------MFEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
T+P ++ G+ IHG +F ++ I NSLI YA CG L + VF
Sbjct: 210 TVPSILSVCGGEGDLMKGKEIHGQVVKNQIFGCEVAIGNSLIDMYAKCGCLHDSEKVFTT 269
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ + ++V+W SMIS + G +A+ L+++M+ +P+ VT+ +L++C+ +E G
Sbjct: 270 MSELNLVTWTSMISCYGVHGKGHEALALFKKMKYCGFQPNCVTITAILASCSHSGLIEQG 329
>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 953
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 8/206 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
LK +H L +F +D A+ A SL YA+++F I L +WN LI Y
Sbjct: 398 LKELHCYSLKQEFVYDELLANAFVASYA--KCGSLSYAQRVFHGIRSKTLNSWNALIGGY 455
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ S +P S LQ+ NS P+ FT+ ++ A ++ R+G+ +HG E D
Sbjct: 456 AQSSDPRLSLDAHLQM-KNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 514
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L + S++ Y CG+L +F + +VSWN++I+G ++ GF E+A+ L+R+M +
Sbjct: 515 LFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVL 574
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFG 239
++P ++M+ V AC+ L G
Sbjct: 575 YGIQPCGISMMTVFGACSLLPSLRLG 600
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 19/197 (9%)
Query: 48 STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS 107
ST D +++ T A+ S + +R FD + NL+ WN +I +YS ++ +
Sbjct: 113 STRLRSDDVLCTRIITMYAMC--GSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEV 170
Query: 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIH 162
+F++++ + P+ FT P VIKA A +G A+HG+ +DL + N+L+
Sbjct: 171 LEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVS 230
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
FY G ++ A +F ++ ++++VSWNSMI F + G + PD T
Sbjct: 231 FYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG------------DDGAFMPDVAT 278
Query: 223 MVVVLSACAKKRDLEFG 239
+V VL CA++R++ G
Sbjct: 279 VVTVLPVCAREREIGVG 295
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 22/196 (11%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ T D + + L + F S A K+FD +P+ NL +WN++IR +S +
Sbjct: 209 VHGLVVKTGLVEDLFVGNALVSFYGTHGFVS--DALKLFDIMPERNLVSWNSMIRVFSDN 266
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
+ + + P+ T+ V+ AR + VG+ +HG + +LV+
Sbjct: 267 GD-------------DGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVV 313
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV--E 214
+N+L+ Y+ G + + +F + K+VVSWN+M+ GF G +L R+M E
Sbjct: 314 NNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSE 373
Query: 215 NVKPDEVTMVVVLSAC 230
+VK DEVT++ + C
Sbjct: 374 DVKADEVTILNAVPVC 389
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 79 MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138
+FD + +L +WNT+I + + P ++ +F Q+V P ++ V A +
Sbjct: 537 LFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQ-PCGISMMTVFGACSLLP 595
Query: 139 QFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
R+G+ H + ED+ I+ S+I YA G + + VF + +K SWN+MI
Sbjct: 596 SLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIM 655
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
G+ G ++AI+L+ EM+ PD++T + VL+AC
Sbjct: 656 GYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTAC 692
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 6/177 (3%)
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTL----PFVIKAAARPVQ 139
N+ +WNT++ +S+ + +F + Q++ S +E T+ P + P
Sbjct: 339 NKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSL 398
Query: 140 FRV-GQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
+ ++ F D +++N+ + YA CG L+ A VF I K + SWN++I G+ +
Sbjct: 399 KELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQS 458
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+++ + +M+ + PD T+ +LSAC+K + L G V I +N ++ DL
Sbjct: 459 SDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 515
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 10/225 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+I A + D + +KL S+ YA ++F+ I P+L+ +N +I+A
Sbjct: 23 QLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNLMIKA 82
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
+ S + +F QL + + P+ +T P+V+K + R G+ +H E
Sbjct: 83 FVKSGSFRSAISLFQQLREHGVW-PDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEF 141
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D + NS + YA G + VF + +D VSWN MISG+V FE+A+++YR M
Sbjct: 142 DPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMW 201
Query: 213 VE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
E N KP+E T+V LSACA R+LE G + +I ++DLT
Sbjct: 202 TESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIAS---ELDLT 243
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 124/253 (49%), Gaps = 37/253 (14%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ +++HA ++ T FDPY + + +E ++F+++P + +WN +I
Sbjct: 125 REGEKVHAFVVKTGLEFDPYVCNSFMD--MYAELGLVEGFTQVFEEMPDRDAVSWNIMIS 182
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-- 154
Y ++ ++ ++ S PNE T+ + A A +G+ IH +L
Sbjct: 183 GYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDL 242
Query: 155 --VISNSLIHFYAVCGDLAMAYCVF------------------VMIGK------------ 182
++ N+L+ Y CG +++A +F V+ G+
Sbjct: 243 TTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSP 302
Query: 183 -KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+D+V W +MI+G+V+ FE+ I L+ EM++ VKPD+ +V +L+ CA+ LE G W
Sbjct: 303 SRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKW 362
Query: 242 VSSHIEKNGIKMD 254
+ ++I++N IK+D
Sbjct: 363 IHNYIDENRIKVD 375
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ AR +F++ P ++ W +I Y + ++ +F ++ P++F + +
Sbjct: 289 GQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVK-PDKFIVVTL 347
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A+ G+ IH ++ D V+ +LI YA CG + ++ +F + +KD
Sbjct: 348 LTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDT 407
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
SW S+I G G +A+EL++ M+ +KPD++T V VLSAC+ +E G
Sbjct: 408 TSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEG 461
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F +E A K F+++P NL TWN +I Y + + +F ++V S + PN +L
Sbjct: 174 FGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMV-ESGFRPNPSSLSS 232
Query: 130 VIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ + ++G+ +H + ++ SL+ Y CGDL A+ +F+++ +KD
Sbjct: 233 VLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKD 292
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
VV+WN+MISG+ + G EKA+ L+ +M E +KPD +T V VLSAC ++ GI
Sbjct: 293 VVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGI 348
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 8/188 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+ +E AR FDQ+P + +WNT+I +S + Q+ +FL + + N +V
Sbjct: 82 ADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYV 141
Query: 131 IKAAARPVQ--FRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ F V +V ++I + G + +A F + K++V+W
Sbjct: 142 ESGDLDLAKQLFEVAPV------RSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTW 195
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
N+MI+G++E E ++L++ M +P+ ++ VL C+ L+ G V I K
Sbjct: 196 NAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICK 255
Query: 249 NGIKMDLT 256
+ + ++T
Sbjct: 256 SPVSWNIT 263
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 81/168 (48%), Gaps = 4/168 (2%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++ AR++FD+IP+P+++++N ++ Y + + + + F Q+ N F
Sbjct: 51 GKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGF- 109
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ + + + M + V N++I Y GDL +A +F + + VV+W +
Sbjct: 110 ---SQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTA 166
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
MI+GF++ G E A + + EM ++N+ + + C + L+
Sbjct: 167 MITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKL 214
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L A ++F+ + TWN+++ YS+ I+ + QL P P+ F+ +
Sbjct: 19 GDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIK---VARQLFDRIPE-PDIFSYNIM 74
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVIS-----NSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ + +F D + + N++I ++ G + A +F+++ ++
Sbjct: 75 LACYLHNADVESAR----LFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNS 130
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENV 216
VSWN+MISG+VE G + A +L+ V +V
Sbjct: 131 VSWNAMISGYVESGDLDLAKQLFEVAPVRSV 161
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H T+ +K +HAQ++ + D Y A KL + A S + A +F+QI PN++
Sbjct: 31 HKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLIS--AFSLCHQMNLAVNVFNQIQDPNVHL 88
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
+NTLIRA+ + + +++F F + N F + FT PF++KA Q IH
Sbjct: 89 YNTLIRAHVQNSQSLKAFATFFDMQKNG-LFADNFTYPFLLKACNGKGWLPTVQMIHCHV 147
Query: 151 E-----DDLVISNSLIHFYAVCGDLAMAYC--VFVMIGKKDVVSWNSMISGFVEGGFFEK 203
E DL + NSLI Y+ CG L + Y +F+ +G+KD+VSWNSMI G V+ G +
Sbjct: 148 EKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGR 207
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
A +L+ EM + D V+ +L K ++
Sbjct: 208 ARKLFDEM----AERDAVSWNTILDGYVKAGEM 236
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 16/200 (8%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E AR +FD++P NL TW +I ++ ++ ++ Q+ + P++ TL +
Sbjct: 265 GDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQM-EAAGLKPDDGTLISI 323
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A +G+ +H + + +SN+L+ YA CG + A +F + +D+
Sbjct: 324 LAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDL 383
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI----- 240
VSWN M+ G G EKAI+L+ +M+ E KPD+VT++ +L AC ++ G+
Sbjct: 384 VSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNS 443
Query: 241 -----WVSSHIEKNGIKMDL 255
+ HIE G +DL
Sbjct: 444 MERDHGIVPHIEHYGCMIDL 463
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 4/214 (1%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
++ IH + FF D + + L + + YA K+F ++ + +L +WN++I
Sbjct: 140 VQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGL 199
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISN 158
+ + ++ +F ++ N L +KA F + M E ++V +
Sbjct: 200 VKAGDLGRARKLFDEMAERDAVSWNTI-LDGYVKAGEMSQAFNL---FEKMPERNVVSWS 255
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
+++ Y GD+ MA +F + K++V+W +ISGF E G ++A LY +ME +KP
Sbjct: 256 TMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKP 315
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
D+ T++ +L+ACA+ L G V + I+K IK
Sbjct: 316 DDGTLISILAACAESGLLVLGKKVHASIKKIRIK 349
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%)
Query: 144 QAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
Q I +DL ++ LI +++C + +A VF I +V +N++I V+ K
Sbjct: 45 QIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLK 104
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
A + +M+ + D T +L AC K L + H+EK G DL
Sbjct: 105 AFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDL 156
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 112/197 (56%), Gaps = 10/197 (5%)
Query: 46 MLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI 105
M+ F + + +L +++ ++ YA ++F I +P+ + WNT+IR + S P+
Sbjct: 1 MIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPL 60
Query: 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSL 160
+ ++ Q+ N P++FT PFV+KA R ++G +HG FE + + N+L
Sbjct: 61 NAISLYSQM-ENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTL 119
Query: 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220
I+F+A CGDLA+A +F K+DVV+W+++ +G+ G A +L+ EM V+ D
Sbjct: 120 IYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVK----DL 175
Query: 221 VTMVVVLSACAKKRDLE 237
V+ V+++ AK+ ++E
Sbjct: 176 VSWNVMITGYAKRGEME 192
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E ARK+FD++P+ ++ TWN +I Y Q+ +F ++ + P+E T+ +
Sbjct: 189 GEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEM-RSVGELPDEVTMLSL 247
Query: 131 IKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+ A GQ IH G + +++ N+LI YA CG + A VF + +KD
Sbjct: 248 LSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKD 307
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
V +WNS++ G G EK+I L+ EM ++PDE+T V VL AC+ +E G
Sbjct: 308 VSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEG 362
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 35/182 (19%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L AR +FD + ++ W+ L Y+ E + +F ++
Sbjct: 127 GDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEM---------------- 170
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
PV+ DLV N +I YA G++ A +F + K+DVV+WN+
Sbjct: 171 ------PVK-------------DLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNA 211
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI+G+V G ++A+E++ EM PDEVTM+ +LSAC DL+ G + I + G
Sbjct: 212 MIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMG 271
Query: 251 IK 252
+
Sbjct: 272 FR 273
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
A+ G +A A+ +F I + D WN+MI G + AI LY +ME V+PD+ T
Sbjct: 23 AISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFP 82
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIK 252
VL AC + ++ G V + + G +
Sbjct: 83 FVLKACTRLCWVKMGFGVHGRVFRLGFE 110
>gi|222618271|gb|EEE54403.1| hypothetical protein OsJ_01428 [Oryza sativa Japonica Group]
Length = 440
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 26/233 (11%)
Query: 4 LSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFT 63
LST SI H + + G Q H + K + + + D Y
Sbjct: 84 LSTFACSIALHACTLVIDLCLGQQLHLQCIK-----KALDVNLAVVNSLIDMYC------ 132
Query: 64 PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
T + + AR +FD P+ NL TWNT+I YS D P+ + + L++ N PN
Sbjct: 133 -----TCARILDARSLFDGTPERNLITWNTMIAGYSQCD-PLMALQLLLEM--NDE--PN 182
Query: 124 EFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFV 178
FTL + A A R G+ +HG + DDL + N+L+ Y+ CG + A VF
Sbjct: 183 CFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNVFD 242
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+G KD SW SMI+G+ G+ +A++L+ M V PD V + ++S+C+
Sbjct: 243 RMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCS 295
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 11/186 (5%)
Query: 76 ARKMFDQIPQP-NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR++FD + +W ++I Y+ + +F ++ + F + A
Sbjct: 38 ARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELST-FACSIALHAC 96
Query: 135 ARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ +GQ +H + +L + NSLI Y C + A +F ++++++WN
Sbjct: 97 TLVIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWN 156
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+MI+G+ + A++L EM N +P+ T+ + SACA L G V + +
Sbjct: 157 TMIAGYSQCDPL-MALQLLLEM---NDEPNCFTLTSITSACADLAALRCGKQVHGAVLRR 212
Query: 250 GIKMDL 255
DL
Sbjct: 213 SYSDDL 218
>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 114/217 (52%), Gaps = 16/217 (7%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASK---LFTPCALSTFSSLEYARKMFDQIPQPNL 88
L + Q + +H ++ F+P+ + ++ C +E AR++FD++ +L
Sbjct: 235 MLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCG-----EVEDARRLFDELGFVDL 289
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
W T+I Y+ + P+ + ++F + PN T+ V+ A+A+ +G+ IH
Sbjct: 290 VLWTTMIVGYTQNGSPLDALLLFSDKKF-VHIVPNSVTIATVLSASAQLRNLSLGRLIHA 348
Query: 149 M------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
M E+D+V+ N+L+ YA C L+ A +F I KDVV+WNS+I+G+VE
Sbjct: 349 MSVKLLVIENDVVM-NALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGN 407
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+A+ L+ +M V+ PD +++V LSAC DL G
Sbjct: 408 EALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIG 444
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 7/219 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
L+ +HA++L+ + +KL + + L AR++ D+ P+P+ YT+ +
Sbjct: 38 SLRALHARLLAHGLLRALRARTKLLS--CYAALGDLASARRVLDETPRPDPYTYRVALGW 95
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTL-PFVIKAAARPVQFRVGQAIH----GMFED 152
++++ + + + P ++ L +KA+ R FR G+ +H
Sbjct: 96 HAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGRRLHCNAVKAGGA 155
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D + N L+ YA GDL A VF I ++VVSW SM+SG ++ GF E+ + L+ EM
Sbjct: 156 DGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMR 215
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
E V P E TM VL AC L G WV + K+G+
Sbjct: 216 EERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGM 254
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
+L A +F +I ++ TWN+LI Y +D ++ M+F Q+ P+ ++ +
Sbjct: 374 ALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSS-PDAISIVNAL 432
Query: 132 KAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A +G+ H F ++ ++ +L++ Y C DL A VF + +++ V
Sbjct: 433 SACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSV 492
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+W +MI G+ G +I+L +M +N++P+EV +LS C+
Sbjct: 493 TWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCS 537
>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
Length = 505
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 109/200 (54%), Gaps = 8/200 (4%)
Query: 58 ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117
A L CA S +L +AR + + + +WN LIR+Y++ D P ++ +L++ +
Sbjct: 54 AGPLLRFCASSPLGNLNHARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEM-RS 112
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAI------HGMFEDDLVISNSLIHFYAVCGDLA 171
P++ T P ++KA A F G+ I HG+ + ++ + N++IHFY C +
Sbjct: 113 LGISPDKLTFPILLKACAXISAFNEGRKIQVDVMKHGL-DCNVYVQNTMIHFYGSCKRIR 171
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A +F + + VVSWN+++S V+ + + L+ +M PDE TMV++LSAC+
Sbjct: 172 DARRMFDEMSYRTVVSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACS 231
Query: 232 KKRDLEFGIWVSSHIEKNGI 251
+ +L FG WV S + + G+
Sbjct: 232 ELGNLSFGRWVHSQVIEKGM 251
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 93/161 (57%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR+MFD++ + +WN ++ A ++ SF +F+++ S + P+E T+ ++ A +
Sbjct: 173 ARRMFDEMSYRTVVSWNAVLSACVDNEWLNDSFGLFVKM-RGSGFDPDETTMVILLSACS 231
Query: 136 RPVQFRVGQAIHG-MFEDDLVIS----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ +H + E +V++ +L+ YA CG + A VF + +++V +W++
Sbjct: 232 ELGNLSFGRWVHSQVIEKGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSA 291
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI G + GF ++A+EL+ +M+ ++ P+ VT + VL AC+
Sbjct: 292 MILGLAQHGFAKEALELFPKMKQSSISPNYVTFLGVLCACS 332
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 115/228 (50%), Gaps = 7/228 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ K+ HA++L F D + AS L CALS + S++YA +F Q+ +P + +NT++R
Sbjct: 2 EEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMR 61
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ D + +I + + P+ FT P ++KA AR G +H E
Sbjct: 62 GH-VKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+D+ + NSLI Y CG++ + VF + ++ V SW+++I+ G + + L +M
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180
Query: 212 EVENV-KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
E + +E +V VLSAC L+ G V + +N +++ E
Sbjct: 181 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVE 228
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 7/205 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++HA +L D + + L + + +F+Q+ + ++ +W+ LI A++S
Sbjct: 109 QVHAHILKLGLENDVFVQNSLIS--MYGKCGEIGVCCAVFEQMNERSVASWSALITAHAS 166
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-----V 155
+ + + E L V+ A +G+++HG ++ +
Sbjct: 167 LGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVI 226
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ SLI Y CG L C+F + KK+ +S++ MISG G+ + + ++ EM +
Sbjct: 227 VETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQG 286
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGI 240
++PD++ V VL+AC+ ++ G+
Sbjct: 287 LEPDDIVYVGVLNACSHAGLVQEGL 311
>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
chloroplastic-like [Vitis vinifera]
Length = 1146
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 109/200 (54%), Gaps = 8/200 (4%)
Query: 58 ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117
A L CA S +L +AR + + + +WN LIR+Y++ D P ++ +L++ +
Sbjct: 695 AGPLLRFCASSPLGNLNHARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEM-RS 753
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAI------HGMFEDDLVISNSLIHFYAVCGDLA 171
P++ T P ++KA A F G+ I HG+ + ++ + N++IHFY C +
Sbjct: 754 LGISPDKLTFPILLKACAAISAFNEGRKIQVDVMKHGL-DCNVYVQNTMIHFYGSCKRIR 812
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A +F + + VVSWN+++S V+ + + L+ +M PDE TMV++LSAC+
Sbjct: 813 DARRMFDEMSYRTVVSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACS 872
Query: 232 KKRDLEFGIWVSSHIEKNGI 251
+ +L FG WV S + + G+
Sbjct: 873 ELGNLSFGRWVHSQVIEKGM 892
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 93/161 (57%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR+MFD++ + +WN ++ A ++ SF +F+++ S + P+E T+ ++ A +
Sbjct: 814 ARRMFDEMSYRTVVSWNAVLSACVDNEWLNDSFGLFVKM-RGSGFDPDETTMVILLSACS 872
Query: 136 RPVQFRVGQAIHG-MFEDDLVIS----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ +H + E +V++ +L+ YA CG + A VF + +++V +W++
Sbjct: 873 ELGNLSFGRWVHSQVIEKGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSA 932
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI G + GF ++A+EL+ +M+ ++ P+ VT + VL AC+
Sbjct: 933 MILGLAQHGFAKEALELFPKMKQSSISPNYVTFLGVLCACS 973
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 110/192 (57%), Gaps = 9/192 (4%)
Query: 68 STFSSLEYARKMFDQIPQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
++ + L YA ++F P P + ++N LIR++ + P + +F++++ ++ P++
Sbjct: 113 TSSAHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQH 172
Query: 126 TLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
T+ +K+ +R VG+ + G D V+ NSLIH YA CGD+ A+ +F
Sbjct: 173 TVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVL-NSLIHMYASCGDVVAAHVLFHT 231
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ K V++WN+MI+G+V+ G +++ +E+++ M DEVT++ V +AC + D G
Sbjct: 232 VQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG 291
Query: 240 IWVSSHIEKNGI 251
W++ + E+ G+
Sbjct: 292 QWIAEYAEEKGM 303
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 12/186 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
A +F + + WN +I Y + E ++ F L++ +P+ +E TL V
Sbjct: 225 AHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEV--RAPF--DEVTLLSVAT 280
Query: 133 AAARPVQFRVGQAIHGMFEDDLVI-----SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A R +GQ I E+ ++ + +L+ YA CG+L A +F + +DVV+
Sbjct: 281 ACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVA 340
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W++MISG+ + +A+ ++ EM+ V P++VTMV VLSACA LE G WV S+I
Sbjct: 341 WSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIR 400
Query: 248 KNGIKM 253
+ + +
Sbjct: 401 RKDLPL 406
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ AR++FD++ ++ W+ +I Y+ SD ++ IF ++ + PN+ T+ V
Sbjct: 321 GELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEM-QGTEVNPNDVTMVSV 379
Query: 131 IKAAARPVQFRVGQAIHG-MFEDDL----VISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A G+ +H + DL ++ +L+ FYA CG + A F + ++
Sbjct: 380 LSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNT 439
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+W ++I G G +A+EL+ M N++P +VT + VL AC+ +E G
Sbjct: 440 WTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEG 493
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 31/165 (18%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A K F+ +P N +TW LI+ +S+ ++ +F ++ + P + T V+ A +
Sbjct: 427 AVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSML-EANIEPTDVTFIGVLLACS 485
Query: 136 RPVQFRVGQAIHG-MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
HG + E+ S+ Y +C + C+ ++G+
Sbjct: 486 -----------HGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGR------------ 522
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G ++A + R M +E P+ V +LSAC +++E G
Sbjct: 523 ---AGLIDEAYQFIRNMPIE---PNAVVWRALLSACTVHKNVEIG 561
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+ S+N +I F+ G E A+ L+ EM + V PD+ T+ + +C++ DL G
Sbjct: 133 RSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRG 192
Query: 242 VSSHIEKNGIKMD 254
V ++ K G +D
Sbjct: 193 VQAYAFKRGFMVD 205
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 14/226 (6%)
Query: 40 KRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++H+ +L FD S L+ C +E A +F+ + N+ WN ++
Sbjct: 265 KQLHSYLLKAGMSFDYITEGSLLDLYVKCG-----DIETAHDIFNLGDRTNVVLWNLMLV 319
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
AY + +SF IF Q+ + PN+FT P +++ Q +G+ IH + FE
Sbjct: 320 AYGQISDLAKSFEIFGQMQATGIH-PNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFE 378
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ +S LI Y+ G L A + M+ K+DVVSW SMI+G+V+ F E+A+ ++EM
Sbjct: 379 SDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM 438
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ V PD + + SACA + + G+ + + + +G D++
Sbjct: 439 QDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISI 484
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 106/212 (50%), Gaps = 14/212 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q +IHA++ + + D + L+ C S E A +F +I + TWN
Sbjct: 464 RQGLQIHARVYVSGYAADISIWNTLVNLYARCGRS-----EEAFSLFREIEHKDEITWNG 518
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
LI + S Q+ M+F+++ + N FT I A A + G+ +HG
Sbjct: 519 LISGFGQSRLYKQALMVFMKMGQAGAKY-NVFTFISAISALANLADIKQGKQVHGRAVKT 577
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ ++N+LI Y CG + A +F + ++ VSWN++I+ + G +A++L+
Sbjct: 578 GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLF 637
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+M+ E +KP++VT + VL+AC+ +E G+
Sbjct: 638 DQMKQEGLKPNDVTFIGVLAACSHVGLVEEGL 669
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 98/188 (52%), Gaps = 6/188 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++F ++ + +W ++ Y+ S ++F ++ Q+ + + P + L V+ A
Sbjct: 97 ARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHW-TAVIPTPYVLSSVLSACT 155
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ F G+ IH F + + N+LI Y G +A VF + D V++N+
Sbjct: 156 KGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNT 215
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ISG + G E A++++ EM++ ++PD VT+ +L+ACA DL+ G + S++ K G
Sbjct: 216 LISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAG 275
Query: 251 IKMDLTFE 258
+ D E
Sbjct: 276 MSFDYITE 283
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 9/223 (4%)
Query: 34 TNQKQL-KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
T Q +L ++IH+ + F D Y + L S + L+ ARK+ + + + ++ +W
Sbjct: 359 TGQIELGEQIHSLSIKNGFESDMYVSGVLID--MYSKYGCLDKARKILEMLEKRDVVSWT 416
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
++I Y D ++ F ++ + +P+ L A A R G IH
Sbjct: 417 SMIAGYVQHDFCEEALATFKEM-QDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYV 475
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ D+ I N+L++ YA CG A+ +F I KD ++WN +ISGF + +++A+ +
Sbjct: 476 SGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMV 535
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ +M K + T + +SA A D++ G V K G
Sbjct: 536 FMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTG 578
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
P V++ A V + G+ D L I N LI YA G + A VF + +D VS
Sbjct: 60 PLVLEIHATSV-------VRGLGADRL-IGNLLIDLYAKNGLVWQARQVFKELSSRDHVS 111
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W +M+SG+ + G ++A LY +M V P + VLSAC K + G + + +
Sbjct: 112 WVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVY 171
Query: 248 KN 249
K
Sbjct: 172 KQ 173
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 87/214 (40%), Gaps = 31/214 (14%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + KQ K++H + + T + A+ L + S+E A+ +F ++ N +WN
Sbjct: 561 LADIKQGKQVHGRAVKTGHTSETEVANALIS--LYGKCGSIEDAKMIFSEMSLRNEVSWN 618
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
T+I + S +++ +F Q+ PN+ T V+ A + G+ E+
Sbjct: 619 TIITSCSQHGRGLEALDLFDQM-KQEGLKPNDVTFIGVLAACSHV----------GLVEE 667
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
L S+ + Y + CV ++G+ G ++A EM
Sbjct: 668 GLSYFKSMSNVYGLNPIPDHYACVVDILGR---------------AGQLDRARRFVDEMP 712
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+ + + +LSAC +++E G + H+
Sbjct: 713 I---TANAMIWRTLLSACKVHKNIEIGELAAKHL 743
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 36/227 (15%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
L+ SS+ ARK+FD +L +WNTLI Y P ++ +F ++V + P+E T
Sbjct: 165 LAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVT 224
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ V+ +A+ +G+ +HG E V + N ++ Y CGDL A VF I
Sbjct: 225 MIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGID 284
Query: 182 KKDVVSWNSMISGFVEGGFFE-------------------------------KAIELYRE 210
KK +VSW +MI G+ + G + +A+ L+ +
Sbjct: 285 KKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHD 344
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M+ V+PD++TMV +LSAC++ LE G+WV +I++ + + +
Sbjct: 345 MQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVML 391
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 7/176 (3%)
Query: 84 PQPNLYTWNTLIRAYS-SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
P + +N +RA S +D + + + L P+ T PF++KA AR +
Sbjct: 79 PPDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLRSARPDHLTFPFLLKACARLQERNY 138
Query: 143 GQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G A+ G F D+ + N+ +HF AVC +A A +F +D+VSWN++I G+V
Sbjct: 139 GNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVR 198
Query: 198 GGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
G +A+E++ M + V PDEVTM+ V+S A+ RDLE G + ++E +G++
Sbjct: 199 RGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVR 254
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F ++ ARK+FD++P+ +++ WN L+ Y ++ +F + + P++ T+
Sbjct: 299 AQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDM-QEAMVEPDDITM 357
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ A ++ +G +H + +++ +L+ Y+ CG++ A VF I +
Sbjct: 358 VNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPE 417
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
K+ ++W +MISG G + AI+ ++ M ++PDE+T + VLSAC
Sbjct: 418 KNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACC 466
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 12/180 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+S + AR MF ++ + N+ +WN LI Y+ + E ++ +F L+ P +T +
Sbjct: 334 ASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC-LLKRESVCPTHYTFANI 392
Query: 131 IKAAARPVQFRVGQAIH-----------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
+KA A +G H EDD+ + NSLI Y CG + Y VF
Sbjct: 393 LKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRK 452
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++D VSWN+MI GF + G+ +A+EL+REM KPD +TM+ VLSAC +E G
Sbjct: 453 MMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEG 512
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 121/257 (47%), Gaps = 40/257 (15%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + + +IH+ + + D Y S L S ++ A+++FD++ N+ +WN
Sbjct: 165 LNDMNRGVQIHSLIAKSPCLSDVYIGSALVD--MYSKCGNVNDAQQVFDEMGDRNVVSWN 222
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+LI Y + +++ +F Q++ S P+E TL VI A A +VGQ +H
Sbjct: 223 SLITCYEQNGPAVEALKVF-QVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVK 281
Query: 150 ---FEDDLVISNSLIHFYAVCGDL-------------------------AMAYC------ 175
+D+++SN+ + YA C + AMA
Sbjct: 282 MDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARL 341
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F + +++VVSWN++I+G+ + G E+A+ L+ ++ E+V P T +L ACA D
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLAD 401
Query: 236 LEFGIWVSSHIEKNGIK 252
L G+ H+ K+G K
Sbjct: 402 LHLGMQAHVHVLKHGFK 418
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 124/251 (49%), Gaps = 41/251 (16%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI--- 95
++ +HA ++ + F + + ++L A + SLE R++FD++PQ N++TWN+++
Sbjct: 39 VRCVHASVIKSGFSNEVFIQNRLID--AYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGL 96
Query: 96 -------------RAYSSSDEPIQSFMI--------------FLQLVYNSPYFPNEFTLP 128
R+ D+ + M+ + +++ + NE+T
Sbjct: 97 TKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFA 156
Query: 129 FVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
+ A + G IH + D+ I ++L+ Y+ CG++ A VF +G +
Sbjct: 157 SGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDR 216
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+VVSWNS+I+ + + G +A+++++ M V+PDEVT+ V+SACA ++ G V
Sbjct: 217 NVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVH 276
Query: 244 SHIEKNGIKMD 254
+ + +KMD
Sbjct: 277 ARV----VKMD 283
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 110 IFLQLVYNSPYF----PNEFTLPFVIKAAARPVQFRVGQA--IHGMFEDDLVISNSLIHF 163
IFL+L + F P L IK + R A I F +++ I N LI
Sbjct: 5 IFLKLAGDLSSFTVSSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDA 64
Query: 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
YA CG L +F + +++V +WNS+++G + GF ++A L+R M + D+ T
Sbjct: 65 YAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMP----ERDQCTW 120
Query: 224 VVVLSACAKKRDLEFGIWVSSHIEKNG 250
++S A+ E ++ + + K G
Sbjct: 121 NSMVSGFAQHDRCEEALYYFAMMHKEG 147
>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
Length = 838
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 12/229 (5%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+ ++H+Q L D + +KL A ++S+ +A K+F + P +Y WN L+R+Y
Sbjct: 155 ISQLHSQCLKAGLVHDSFIVTKLNVLYA--RYASIHHAHKLFQETPHRTVYLWNALLRSY 212
Query: 99 SSSDEPIQSFMIFLQLVYNSPYF----PNEFTLPFVIKAAARPVQFRVGQAIHGMF---- 150
E +++ +F Q+ S P+ +++ +K+ A + +G+ IHG
Sbjct: 213 CFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVR 272
Query: 151 -EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ D+ + ++LI Y CG + A VF+ K DVV W S+ISG+ + G E A+ +
Sbjct: 273 IDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFS 332
Query: 210 EMEV-ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M V E V PD VT+V V SACA+ + + G V +++ G+ L
Sbjct: 333 RMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCL 381
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 16/221 (7%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
RI M D L+T C + A K+F + P+P++ W ++I Y
Sbjct: 272 RIDGDMFVGSALID------LYTKCG-----QMNDAVKVFMEYPKPDVVLWTSIISGYEQ 320
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLV 155
S P + F ++V + P+ TL V A A+ F++G+++HG ++ L
Sbjct: 321 SGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLC 380
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
++NSL+H Y G + A +F + KD++SW++M++ + + G ++L+ EM +
Sbjct: 381 LANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKR 440
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+KP+ VT+V VL ACA +LE G+ + G +M+ T
Sbjct: 441 IKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETT 481
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S++ A +F ++ ++ +W+T++ Y+ + +F +++ + PN T+ V
Sbjct: 393 GSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEML-DKRIKPNWVTVVSV 451
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
++A A G IH + FE + +S +L+ Y C A +F + KKDV
Sbjct: 452 LRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDV 511
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
++W + SG+ + G +++ ++R M +PD + +V +L+ ++ L+ + + +
Sbjct: 512 IAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAF 571
Query: 246 IEKNG 250
+ KNG
Sbjct: 572 VIKNG 576
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 107/215 (49%), Gaps = 11/215 (5%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFD-PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
++N ++ +IH L+ ++ F+ + S + FS E A +F+++P+ ++ W
Sbjct: 458 ISNLEEGMKIHE--LAVNYGFEMETTVSTALMDMYMKCFSP-EKAVDLFNRMPKKDVIAW 514
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
L Y+ + +S +F ++ +S P+ L ++ + + +H
Sbjct: 515 AVLFSGYADNGMVHESMWVFRNML-SSGTRPDAIALVKILTTISELGILQQAVCLHAFVI 573
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
FE++ I SLI YA C + A VF + KDVV+W+S+I+ + G E+A++
Sbjct: 574 KNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALK 633
Query: 207 LYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGI 240
L+ +M + KP+ VT + +LSAC+ ++ GI
Sbjct: 634 LFYQMANHSDTKPNNVTFISILSACSHSGLIKEGI 668
>gi|125525521|gb|EAY73635.1| hypothetical protein OsI_01524 [Oryza sativa Indica Group]
Length = 560
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 26/233 (11%)
Query: 4 LSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFT 63
LST SI H + + G Q H + K + + + D Y
Sbjct: 170 LSTFACSIALHACTLVIDLCLGQQLHLQCIK-----KALDVNLAVVNSLIDMYC------ 218
Query: 64 PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
T + + AR +FD P+ NL TWNT+I YS D P+ + + L++ N PN
Sbjct: 219 -----TCARILDARSLFDGTPERNLITWNTMIAGYSQCD-PLMALQLLLEM--NDE--PN 268
Query: 124 EFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFV 178
FTL + A A R G+ +HG + DDL + N+L+ Y+ CG + A VF
Sbjct: 269 CFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNVFD 328
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+G KD SW SMI+G+ G+ +A++L+ M V PD V + ++S+C+
Sbjct: 329 RMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCS 381
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 8/198 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+L + ++ +AR +FD++P+ ++ W ++ Y+S+ ++ +F ++V PNE+
Sbjct: 12 SLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAA-PNEY 70
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGD-LAMAYCVFVM 179
TL V+ A P + +H + V + N+LI YA + + A +F
Sbjct: 71 TLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDA 130
Query: 180 IGK-KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+G + SW SMI+G+ G + L++ M + V+ + L AC DL
Sbjct: 131 LGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCL 190
Query: 239 GIWVSSHIEKNGIKMDLT 256
G + K + ++L
Sbjct: 191 GQQLHLQCIKKALDVNLA 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 11/186 (5%)
Query: 76 ARKMFDQIPQP-NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR++FD + +W ++I Y+ + +F ++ + + F + A
Sbjct: 124 ARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVEL-STFACSIALHAC 182
Query: 135 ARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ +GQ +H + +L + NSLI Y C + A +F ++++++WN
Sbjct: 183 TLVIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWN 242
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+MI+G+ + A++L EM N +P+ T+ + SACA L G V + +
Sbjct: 243 TMIAGYSQCDPL-MALQLLLEM---NDEPNCFTLTSITSACADLAALRCGKQVHGAVLRR 298
Query: 250 GIKMDL 255
DL
Sbjct: 299 SYSDDL 304
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 99/183 (54%), Gaps = 14/183 (7%)
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMI----FLQLVYNSPYFPNEFTLPFVIKA-AARPVQFR 141
+ + NTLIRA+++S PI S + F L+ PN+FT PF++KA AA P
Sbjct: 87 DAFLANTLIRAHATS--PIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPD 144
Query: 142 VGQAIHGM-----FEDDLVISNSLIHFYAVCGD--LAMAYCVFVMIGKKDVVSWNSMISG 194
VG H F D +SN+LIH Y+ G L A VF + K+ V+W++MI G
Sbjct: 145 VGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGG 204
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+V GG A+EL+REM+ V+ DEVT++ VL+A LE WV +E+ GI
Sbjct: 205 YVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKS 264
Query: 255 LTF 257
+T
Sbjct: 265 VTL 267
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 6/194 (3%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
HA L F D Y ++ L + L AR +FD++P+ + TW+ +I Y
Sbjct: 150 HAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGG 209
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVIS 157
+ +F ++ N +E T+ V+ AA + + + E + + +
Sbjct: 210 LSSDAVELFREMQANGVQ-ADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLC 268
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
N+LI A CGD+ A VF + ++ VVSW S+I G ++A+ ++ EM+V V
Sbjct: 269 NALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVP 328
Query: 218 PDEVTMVVVLSACA 231
PD+V + VL+AC+
Sbjct: 329 PDDVAFIGVLTACS 342
>gi|57899090|dbj|BAD86909.1| putative PPR986-12 [Oryza sativa Japonica Group]
Length = 560
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 26/233 (11%)
Query: 4 LSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFT 63
LST SI H + + G Q H + K + + + D Y
Sbjct: 170 LSTFACSIALHACTLVIDLCLGQQLHLQCIK-----KALDVNLAVVNSLIDMYC------ 218
Query: 64 PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
T + + AR +FD P+ NL TWNT+I YS D P+ + + L++ N PN
Sbjct: 219 -----TCARILDARSLFDGTPERNLITWNTMIAGYSQCD-PLMALQLLLEM--NDE--PN 268
Query: 124 EFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFV 178
FTL + A A R G+ +HG + DDL + N+L+ Y+ CG + A VF
Sbjct: 269 CFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNVFD 328
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+G KD SW SMI+G+ G+ +A++L+ M V PD V + ++S+C+
Sbjct: 329 RMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCS 381
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+L + ++ +AR +FD++P+ ++ W ++ Y+S+ ++ +F ++V + PNE+
Sbjct: 12 SLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVA-AGAAPNEY 70
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGD-LAMAYCVFVM 179
TL V+ A P + +H + V + N+LI YA + + A +F
Sbjct: 71 TLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDA 130
Query: 180 IGK-KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+G + SW SMI+G+ G + L++ M + V+ + L AC DL
Sbjct: 131 LGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCL 190
Query: 239 GIWVSSHIEKNGIKMDLT 256
G + K + ++L
Sbjct: 191 GQQLHLQCIKKALDVNLA 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 11/186 (5%)
Query: 76 ARKMFDQIPQP-NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR++FD + +W ++I Y+ + +F ++ + + F + A
Sbjct: 124 ARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVEL-STFACSIALHAC 182
Query: 135 ARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ +GQ +H + +L + NSLI Y C + A +F ++++++WN
Sbjct: 183 TLVIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWN 242
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+MI+G+ + A++L EM N +P+ T+ + SACA L G V + +
Sbjct: 243 TMIAGYSQCDPL-MALQLLLEM---NDEPNCFTLTSITSACADLAALRCGKQVHGAVLRR 298
Query: 250 GIKMDL 255
DL
Sbjct: 299 SYSDDL 304
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+ +LI G + A +F + ++DVV+W +M+SG+ G +A++++R M
Sbjct: 6 ATTLISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGA 65
Query: 217 KPDEVTMVVVLSAC 230
P+E T+ VL+AC
Sbjct: 66 APNEYTLSSVLTAC 79
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 120/219 (54%), Gaps = 8/219 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ +R+H M+ T + Y ++L + L AR+MFD++PQ N+ +W +I
Sbjct: 107 REGQRVHTHMIKTCYLPSVYLRTRLIV--LYNKCDCLGDAREMFDEMPQKNVVSWTAMIS 164
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
AYS ++ +F++++ S PN FT ++ + + F G+ IH + +E
Sbjct: 165 AYSQRGFAFEALNLFVEML-RSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYE 223
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + +SL+ YA G + A+ VF + ++DVV+ ++ISG+ + G E+A++L+R++
Sbjct: 224 SHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQL 283
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
++E + + VT VL+A + L G V SH+ ++G
Sbjct: 284 QIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSG 322
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 11/189 (5%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F +P+ ++ +I Y+ ++ +F QL N T V+ A +
Sbjct: 245 AHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEG-MNSNSVTYASVLTALS 303
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
G+ +H G + +V+ NSLI Y+ CG++ A +F + ++ +SWN
Sbjct: 304 GLAALNHGKQVHSHVLRSGQY-SYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWN 362
Query: 190 SMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKR--DLEFGIWVSSHI 246
+M+ G+ + G + +EL++ M EN VKPD +T + VLS C+ + D+ I+ +
Sbjct: 363 AMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVN 422
Query: 247 EKNGIKMDL 255
K+GI+ D+
Sbjct: 423 GKDGIEPDI 431
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 47/228 (20%)
Query: 21 TVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF 80
+N+G Q H H L + + ++ ++ + D YS K C YAR++F
Sbjct: 307 ALNHGKQVHSHVLRSGQ-----YSYVVLLNSLIDMYS--KCGNVC---------YARRIF 350
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
D +P+ +WN ++ YS + +F + + P+ T V+ +
Sbjct: 351 DSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS----- 405
Query: 141 RVGQAIHGMFED-DLVISNSLIHFY-AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
HG ED L I ++++ + D+ CV ++G+
Sbjct: 406 ------HGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGR---------------A 444
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G E+A + ++M P +L +C D+E GI V +
Sbjct: 445 GRVEEAFDFIKKMP---FVPTAAIWGSLLGSCRVHSDVEIGIIVGQKL 489
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 108/209 (51%), Gaps = 6/209 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI-PQPNLYTWNTLIR 96
+L++IH+ ++ P + L CA+S SL YA+ +FD+ P+ WN LIR
Sbjct: 20 KLRKIHSHVIINGLHHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFDSDPSTSAWNYLIR 79
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR----PVQFRV-GQAIHGMFE 151
+S S P+ + + + +++ +S P+ FT F +KA R P + G I F
Sbjct: 80 GFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCLELHGSVIRSGFL 139
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D ++S +L+ Y+ G + +A VF + +D+VSWN+MIS F G +A +Y M
Sbjct: 140 ADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAGLHHQAFSMYSRM 199
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGI 240
E V D T+V +LS+CA L G+
Sbjct: 200 ANEGVCVDAYTIVALLSSCAHVSALNMGV 228
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 106/204 (51%), Gaps = 8/204 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ + F D ++ L S S+E A K+FD++P +L +WN +I +S +
Sbjct: 129 LHGSVIRSGFLADAIVSTNLVR--CYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHA 186
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
Q+F ++ ++ N + +T+ ++ + A +G +H + E + +
Sbjct: 187 GLHHQAFSMYSRMA-NEGVCVDAYTIVALLSSCAHVSALNMGVMLHRIACDIRCESSVFV 245
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+LI YA CG L A VF + K+DV++WNSMI G+ G +AI +R+M V
Sbjct: 246 CNALIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGV 305
Query: 217 KPDEVTMVVVLSACAKKRDLEFGI 240
+P+ VT + +L C+ + ++ G+
Sbjct: 306 RPNAVTFLGLLLGCSHQGLVKEGV 329
>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 579
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 123/222 (55%), Gaps = 9/222 (4%)
Query: 39 LKRIHAQMLSTDFFF-DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+ +IHA +L+T FF D S ++L + +++ AR +F+++PQ ++ WN++I A
Sbjct: 1 MTQIHALILTTGLFFNDANSIAQLI--ASYGRINNIIPARNVFEKMPQRSINAWNSMIIA 58
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED----- 152
YS ++ P + ++ +++ + P+ T +KA + + +G+ I D
Sbjct: 59 YSRTNYPDEVLNLYYRMI-SEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGF 117
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + +S+++ YA G + A VF + K+DVVSW +MI+GF + G AI++YR M+
Sbjct: 118 DVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQ 177
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E + D V MV ++ AC D +FG+ V H+ + + MD
Sbjct: 178 KERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMD 219
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 11/246 (4%)
Query: 8 VISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL 67
+IS P+ +T TV + L + + I Q + + FD + S + A
Sbjct: 75 MISEGIKPDSSTFTVT---LKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAK 131
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A+ +FD++ + ++ +W T+I ++ S P+ + I+ + + + +
Sbjct: 132 S--GKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIY-RTMQKERTEGDGVVM 188
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+I+A + G ++HG D V+ SLI YA G L +A VF I
Sbjct: 189 VGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPY 248
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
K V+SW ++ISGF + GF K + EM+ KPD V+++ LSACA+ +L+ G +
Sbjct: 249 KSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSL 308
Query: 243 SSHIEK 248
HI K
Sbjct: 309 HGHIVK 314
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 8/216 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H M+ + D + L A + LE A ++F+ IP ++ +W LI ++ +
Sbjct: 207 VHGHMVRREMNMDNVLQTSLIDMYAKN--GKLELASRVFEGIPYKSVISWGALISGFAQN 264
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED----DLVIS 157
++ +++ NS + P+ +L + A A+ +VG+++HG D V
Sbjct: 265 GFANKTLASLVEM-QNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYLDKVSG 323
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
+LI YA CG L A +F I +D++ WN+MIS + G +A+ L+ +M+ N+
Sbjct: 324 TALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNIT 383
Query: 218 PDEVTMVVVLSACAKKRDLEFG-IWVSSHIEKNGIK 252
PD T +LSAC+ +E G W I+K+ I+
Sbjct: 384 PDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQ 419
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 38/215 (17%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
N K K +H ++ + D S + L + C +L +AR +FDQI +L W
Sbjct: 301 NLKVGKSLHGHIVKR-LYLDKVSGTALIDMYAKCG-----ALTFARALFDQIEPRDLILW 354
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
N +I +Y + I++ +FL++ + P+ T ++ A + GQ +
Sbjct: 355 NAMISSYGIHGDGIEALSLFLKM-KETNITPDHATFASLLSACSHSGLVEEGQYWFHVLI 413
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D I S H+ C+ ++ + +G VE E Y+ +
Sbjct: 414 DKSKIQPSEKHYA----------CMVDLLSR----------AGQVE--------EAYQLI 445
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
E ++KP V +LS C ++L G V+ I
Sbjct: 446 ESMHIKPGLAIWVALLSGCLNHKNLLIGEMVAKKI 480
>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
Length = 878
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 115/208 (55%), Gaps = 15/208 (7%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL---EYARKMFDQIPQPNLYTWNTLIRA 97
+IHAQ++ T+ Y + + L+++S L E A +F I Q ++ +W+ ++
Sbjct: 425 QIHAQVIKTN-----YECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTC 479
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ-FRVGQAIHGM-----FE 151
Y+ + + + IF+++ + PNEFT+ VI A A P +G+ H +
Sbjct: 480 YAQAGDSDGATNIFIKMTMHG-LKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCH 538
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D L +S++L+ YA G + A C+F +D+VSWNSM+SG+ + G+ +KA++++R+M
Sbjct: 539 DALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQM 598
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
E E ++ D VT + V+ CA +E G
Sbjct: 599 EAEGIEMDGVTFLSVIMGCAHAGLVEEG 626
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 6/180 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
RK+F+ +P+ N+ TW +L+ Y D + M + +PN T V+ A
Sbjct: 158 GRKVFEAMPKRNVVTWTSLLTGYIQ-DGALSDVMELFFRMRAEGVWPNSVTFASVLSVVA 216
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ +H + + NSL++ YA CG + A VF + +D+VSWN+
Sbjct: 217 SQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNT 276
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+++G V G +A++L+ + + T V+ CA + L + S + K G
Sbjct: 277 LMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRG 336
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 91/199 (45%), Gaps = 15/199 (7%)
Query: 40 KRIHAQML---STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+R+HAQ + F S ++ C L +E AR +F + ++ +WNTL+
Sbjct: 225 RRVHAQSVKFGCCSTVFVCNSLMNMYAKCGL-----VEEARVVFCGMETRDMVSWNTLMA 279
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ +++ +F +S + T VIK A Q + + +H F
Sbjct: 280 GLVLNGHDLEALQLFHD-SRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFH 338
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMI-GKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ +L+ Y+ G L A +F+++ G ++VVSW +MI+G ++ G A L+
Sbjct: 339 SYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSR 398
Query: 211 MEVENVKPDEVTMVVVLSA 229
M + V P++ T +L+A
Sbjct: 399 MREDGVAPNDFTYSTILTA 417
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 100/234 (42%), Gaps = 16/234 (6%)
Query: 26 HQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE---YARKMFDQ 82
HQR L QL+ +A L+ + P S S L L ++L AR+ FD+
Sbjct: 9 HQRRHWCLA---QLRGKNAGALAPELA--PKSQSTLACSVPLENQTNLNDATGARQAFDE 63
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
IP N T + + ++ Q+ FL + L V+K +
Sbjct: 64 IPHRN--TLDHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVL 121
Query: 143 GQAIHGMF------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
G+ +HG+ D+ + SL+ Y + VF + K++VV+W S+++G++
Sbjct: 122 GKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYI 181
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ G +EL+ M E V P+ VT VLS A + ++ G V + K G
Sbjct: 182 QDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFG 235
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 122/257 (47%), Gaps = 39/257 (15%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N K L++IHA+++ + D KL ST + YA +F QI P +TWN +
Sbjct: 39 NFKHLRQIHAKIIRSGLSNDQLLTRKLIH--LYSTHGRIAYAILLFYQIQNPCTFTWNLI 96
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
IRA + + Q+ M++ +V ++FT PFVIKA + +G+ +HG
Sbjct: 97 IRANTINGLSEQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYG 155
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF-------- 201
F D+ + N+LI FY CG A VF + ++VVSW ++ISG + G
Sbjct: 156 FSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFD 215
Query: 202 -----------------------EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
E+A+EL++ M+ EN+ P+E TMV ++ AC + L
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTL 275
Query: 239 GIWVSSHIEKNGIKMDL 255
G + + KN I++ +
Sbjct: 276 GRGIHDYAIKNCIEIGV 292
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 6/179 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L + L+ AR++FD+IP N+ +W +I Y + +P ++ +F ++ + FPNE+
Sbjct: 200 GLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN-IFPNEY 258
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ +IKA +G+ IH E + + +LI Y+ CG + A VF +
Sbjct: 259 TMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETM 318
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+K + +WNSMI+ G ++A+ L+ EME NVKPD +T + VL AC ++++ G
Sbjct: 319 PRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 5/169 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
++K+FD + + + +WN++I Y+ S ++ +F +V + N TL V+ A A
Sbjct: 1305 SKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACA 1364
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R G+ IH E ++ + S+I Y CG + MA F + +K+V SW +
Sbjct: 1365 HAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTA 1424
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
M++G+ G ++A++++ +M VKP+ +T V VL+AC+ +E G
Sbjct: 1425 MVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEG 1473
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 19/228 (8%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
H Q F D + +S L S L+ AR +FD+IP N+ +W ++I Y ++
Sbjct: 1165 HQQAFVFGFETDLFVSSALID--MYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNE 1222
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPF-------VIKAAARPVQFRVGQAIHGM-----F 150
+ + ++F + + +P V+ A +R + + +HG F
Sbjct: 1223 QADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGF 1282
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ + + N+L+ YA CG ++ VF + +KD +SWNSMI+ + + G +A+E++
Sbjct: 1283 DGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHG 1342
Query: 211 MEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M V+ + VT+ VL ACA L G + + IKMDL +
Sbjct: 1343 MVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV----IKMDLEY 1386
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 80 FDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139
+ + + N+++WN++I + + +++ F L P + P IK+ +
Sbjct: 1099 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSL-RKLGLIPTRSSFPCTIKSCSALCD 1157
Query: 140 FRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
G+ H FE DL +S++LI Y+ CG L A +F I ++VVSW SMI+G
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217
Query: 195 FVEGGFFEKAIELYR-----EMEVE---NVKPDEVTMVVVLSACAK 232
+V+ + A+ L++ E EVE NV D V MV VLSAC++
Sbjct: 1218 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSR 1263
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 82/203 (40%), Gaps = 37/203 (18%)
Query: 40 KRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K IH Q++ D ++ S ++ C +E A+K FD++ + N+ +W ++
Sbjct: 1373 KCIHDQVIKMDLEYNVCVGTSIIDMYCKCG-----RVEMAKKTFDRMKEKNVKSWTAMVA 1427
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
Y ++ IF ++V + PN T V+ A + G+ E+
Sbjct: 1428 GYGMHGRAKEALDIFYKMV-RAGVKPNYITFVSVLAACSHA----------GLVEEGWHW 1476
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N++ H Y + + + + M+ F G +A L + M+ +
Sbjct: 1477 FNAMKHKYDI---------------EPGIEHYGCMVDLFGRAGCLNEAYNLIKRMK---M 1518
Query: 217 KPDEVTMVVVLSACAKKRDLEFG 239
KPD V +L AC ++++ G
Sbjct: 1519 KPDFVVWGSLLGACRIHKNVDLG 1541
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 23/231 (9%)
Query: 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL 73
H T + NG H + N+ Q + + ++ D Y+ S+
Sbjct: 360 HACACTGLLENGKDVHNYIKENKMQ-----SDLFVSNALMDMYAKC-----------GSM 403
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
A +F ++ ++ +WNT+I YS + P ++ +F+++ YNS PN T+ ++ A
Sbjct: 404 GDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSK--PNSITMACILPA 461
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A GQ IHG F D ++N+L+ Y CG L +A +F MI +KD+VSW
Sbjct: 462 CASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSW 521
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
MI+G+ G+ +AI + EM ++PDEV+ + +L AC+ L+ G
Sbjct: 522 TVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEG 572
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 12/191 (6%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+E ARK+FD++ ++ +WN++I Y S S++ + F L L N+ T+
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLA----TMVS 256
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ + +G+A+HG F +L ++N L+ Y+ G+L A VF +G++
Sbjct: 257 VVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERS 316
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VVSW SMI+G+ G + ++ L+ EME E + PD T+ +L ACA LE G V +
Sbjct: 317 VVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHN 376
Query: 245 HIEKNGIKMDL 255
+I++N ++ DL
Sbjct: 377 YIKENKMQSDL 387
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 104/198 (52%), Gaps = 10/198 (5%)
Query: 65 CALSTFS---SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
C L +S +L A ++F+ + + ++ +W ++I Y+ S +F ++
Sbjct: 291 CLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM-EKEGIS 349
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCV 176
P+ FT+ ++ A A G+ +H ++ DL +SN+L+ YA CG + A+ V
Sbjct: 350 PDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSV 409
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + KD+VSWN+MI G+ + +A+ L+ EM+ N KP+ +TM +L ACA L
Sbjct: 410 FSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQY-NSKPNSITMACILPACASLAAL 468
Query: 237 EFGIWVSSHIEKNGIKMD 254
E G + HI +NG +D
Sbjct: 469 ERGQEIHGHILRNGFSLD 486
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 56/221 (25%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+RIH+ + S D D SKL + C L R++FD++ ++ WN L+
Sbjct: 121 RRIHSIIQSNDVEVDGVLGSKLVFMYVTCG-----DLREGRRIFDKVANEKVFLWNLLMN 175
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
Y+ +S +F ++ R + R ++ +F++
Sbjct: 176 GYAKIGNFRESLSLFKRM---------------------RELGIRRVESARKLFDE---- 210
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+G +DV+SWNSMISG+V G EK ++L+ +M + +
Sbjct: 211 -----------------------LGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGI 247
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
D TMV V++ C+ L G + + K +LT
Sbjct: 248 NTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTL 288
>gi|115438849|ref|NP_001043704.1| Os01g0646000 [Oryza sativa Japonica Group]
gi|113533235|dbj|BAF05618.1| Os01g0646000 [Oryza sativa Japonica Group]
Length = 252
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 117/218 (53%), Gaps = 10/218 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL-STFSSLEYARKMFDQIPQPNLYTWN 92
++ L +H +++ D + A +L A + + YARK+FD + QPN + WN
Sbjct: 28 ASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWN 87
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV---GQAIHGM 149
+IR YSS + P + +F ++ P+ +T+ V+ A+A + G AIH +
Sbjct: 88 CMIRGYSSCEAPRDALAVFREM-RRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHAL 146
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
F D+ + + L+++Y + A VF + ++DVVSW SMIS + G ++K
Sbjct: 147 VRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKV 206
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+++ EM+ E + P++VT++ +LSAC + + ++ G WV
Sbjct: 207 LKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWV 244
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 95/180 (52%), Gaps = 12/180 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+S + AR MF ++ + N+ +WN LI Y+ + E ++ +F L+ P ++ +
Sbjct: 334 ASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC-LLKRESVCPTHYSFANI 392
Query: 131 IKAAARPVQFRVGQAIH-----------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
+KA A + +G H EDD+ + NSLI Y CG + Y VF
Sbjct: 393 LKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRK 452
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++D VSWN+MI GF + G+ +A+EL+REM KPD +TM+ VLSAC +E G
Sbjct: 453 MMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEG 512
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 123/246 (50%), Gaps = 37/246 (15%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI--- 95
++ +HA ++ + F + + ++L A S SLE R++FD++PQ N+YTWN+++
Sbjct: 39 VRYVHASVIKSGFSNEIFIQNRLID--AYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGL 96
Query: 96 -------------RAYSSSDEPIQSFMI--------------FLQLVYNSPYFPNEFTLP 128
R+ D+ + M+ + +++ + NE++
Sbjct: 97 TKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFA 156
Query: 129 FVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V+ A + G +H + F D+ I ++L+ Y+ CG++ A VF +G +
Sbjct: 157 SVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDR 216
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+VVSWNS+I+ F + G +A+++++ M V+PDEVT+ V+SACA ++ G V
Sbjct: 217 NVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVH 276
Query: 244 SHIEKN 249
+ KN
Sbjct: 277 GRVVKN 282
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 125/260 (48%), Gaps = 46/260 (17%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + + ++H+ + + F D Y S L ++ C ++ A+++FD++ N+
Sbjct: 165 LNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG-----NVNDAQRVFDEMGDRNVV 219
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+WN+LI + + +++ +F Q++ S P+E TL VI A A +VGQ +HG
Sbjct: 220 SWNSLITCFEQNGPAVEALDVF-QMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGR 278
Query: 150 ------FEDDLVISNSLIHFYAVCGDL-------------------------AMAYC--- 175
+D+++SN+ + YA C + AMA
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338
Query: 176 ---VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
+F + +++VVSWN++I+G+ + G E+A+ L+ ++ E+V P + +L ACA
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398
Query: 233 KRDLEFGIWVSSHIEKNGIK 252
+L G+ H+ K+G K
Sbjct: 399 LAELHLGMQAHVHVLKHGFK 418
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 31/149 (20%)
Query: 132 KAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
K +A V++ I F +++ I N LI Y+ CG L VF + ++++ +WNS+
Sbjct: 33 KLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSV 92
Query: 192 ISGFVEGGFFEKAIELYRE-------------------------------MEVENVKPDE 220
++G + GF ++A L+R M E +E
Sbjct: 93 VTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNE 152
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+ VLSAC+ D+ G+ V S I K+
Sbjct: 153 YSFASVLSACSGLNDMNKGVQVHSLIAKS 181
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 12/186 (6%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C + +S++ AR MF + + N+ +WN LI Y+ + E ++ +FL L+ +P
Sbjct: 327 CGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFL-LLKRESIWPTH 385
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGMF-----------EDDLVISNSLIHFYAVCGDLAMA 173
+T ++ A A ++G+ H E D+ + NSLI Y CG +
Sbjct: 386 YTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDG 445
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF + ++DVVSWN+MI G+ + G+ A+E++R+M V KPD VTM+ VLSAC+
Sbjct: 446 CLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHA 505
Query: 234 RDLEFG 239
+E G
Sbjct: 506 GLVEEG 511
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 120/258 (46%), Gaps = 46/258 (17%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
LT+ +IHA + + + D Y S L ++ C + + A++ FD + N+
Sbjct: 164 LTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGV-----VACAQRAFDGMAVRNIV 218
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+WN+LI Y + ++ +F+ ++ N P+E TL V+ A A R G IH
Sbjct: 219 SWNSLITCYEQNGPAGKALEVFVMMMDNGVE-PDEITLASVVSACASWSAIREGLQIHAR 277
Query: 150 ------FEDDLVISNSLIHFYA--------------------------VCG-----DLAM 172
+ +DLV+ N+L+ YA VCG +
Sbjct: 278 VVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKA 337
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
A +F + +K+VVSWN++I+G+ + G E+A+ L+ ++ E++ P T +L+ACA
Sbjct: 338 ARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACAN 397
Query: 233 KRDLEFGIWVSSHIEKNG 250
DL+ G + I K+G
Sbjct: 398 LADLKLGRQAHTQILKHG 415
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 115/243 (47%), Gaps = 35/243 (14%)
Query: 40 KRIHAQMLSTDF---------FFDPYS-------ASKLFTP-------------CALSTF 70
+RIHA+++ T F D Y A K+F L+ F
Sbjct: 39 RRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKF 98
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ A +F +P+P+ +WN ++ ++ D ++ F+ + ++ + NE++
Sbjct: 99 GKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDM-HSEDFVLNEYSFGSA 157
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A +G IH + D+ + ++L+ Y+ CG +A A F + +++
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNI 217
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VSWNS+I+ + + G KA+E++ M V+PDE+T+ V+SACA + G+ + +
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHAR 277
Query: 246 IEK 248
+ K
Sbjct: 278 VVK 280
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
N+++ G L A+ VF + + D SWN+M+SGF + FE+A+ + +M E+
Sbjct: 89 NAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFV 148
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+E + LSACA DL GI + + I K+ +D+
Sbjct: 149 LNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDV 186
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 106/181 (58%), Gaps = 7/181 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS-LEYARKMFDQIPQPNLYTWNTLIR 96
+L++IHAQM+ T+ ++ S+L C+LS S L+YA +F +I PN + + LI+
Sbjct: 21 ELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIK 80
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMFED--- 152
+S + P++S +++ +++ Y EF++P V+KA + + F G+ +HG
Sbjct: 81 GFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHL 140
Query: 153 --DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D + NS++ Y G++ +A VF + +DVVSWNSMI+G+++ G E A EL+ E
Sbjct: 141 WFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDE 200
Query: 211 M 211
M
Sbjct: 201 M 201
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 37/218 (16%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H Q+L T +FDP+ + + F +E AR++FD++P ++ +WN++I Y
Sbjct: 129 RQVHGQVLKTHLWFDPFVGNSMVR--MYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYL 186
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS 159
+ E + +F + M E DLV N+
Sbjct: 187 KAGEIELASELFDE-----------------------------------MPERDLVSCNA 211
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
+I Y CG +A VF + KDVV+W SMIS +V+ KA++L+REM ++PD
Sbjct: 212 MIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPD 271
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+V VLSA A +E G W+ +++ N I++ F
Sbjct: 272 GPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGF 309
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A K+F+ + ++ TW ++I AY + P+++ +F +++ + P+ + V+ A
Sbjct: 223 ELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREML-SLGLRPDGPAIVSVLSA 281
Query: 134 AARPVQFRVGQAIHGMFEDDLV------ISNSLIHFYAVCGDLAMAYCVFVMIG-KKDVV 186
A G+ +H + + I ++LI Y+ CG + AY VF I ++++
Sbjct: 282 IADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIG 341
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
WNSMISG G +A++++ EME +++P+E+T + +LS C+ +E G
Sbjct: 342 DWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEG 394
>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 587
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 8/227 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N K+ +H Q + + P+ + + T S + ++ A K F I + ++ +WNTL
Sbjct: 217 NLKRGAELHCQTVKLNLDSTPFIGNVIIT--MYSELNLIQEAEKAFRLIEEKDVISWNTL 274
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----M 149
I A S D+ + +F + + P++FT + A A G+ IH
Sbjct: 275 IAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTR 334
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
DL + N+L++ YA CG + AY +F + ++VSWN++I+GF G E+A+EL+
Sbjct: 335 LYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFE 394
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFG-IWVSSHIEKNGIKMDL 255
+M ++PD VT + +L+AC ++ G ++ +S E GI D+
Sbjct: 395 QMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDI 441
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 20/220 (9%)
Query: 31 HFLTNQKQLK---RIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIP 84
H + K L+ +HA +L T D + ++ ++ C +TF AR++FD++
Sbjct: 11 HHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTF-----ARQVFDEMF 65
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ NL +W+ +I Y + EP + ++ Q+ PNE+ VI A A +GQ
Sbjct: 66 EKNLVSWSAMISGYDQAGEPQMAIDLYSQMFL----VPNEYVFASVISACASLSAVTLGQ 121
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
IH +E +SNSLI Y C + A VF + + VS+N++I+GFVE
Sbjct: 122 KIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQ 181
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
E+ +E ++ M + + PD + VL C +L+ G
Sbjct: 182 QLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRG 221
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 37/210 (17%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + K+IHA ++ T + D + L + C + YA +F ++ NL
Sbjct: 317 LASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCG-----CIGYAYDIFSKMVHHNLV 371
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+WNT+I + + ++ +F Q+ S P+ T ++ A G+
Sbjct: 372 SWNTIIAGFGNHGLGERAVELFEQM-NASGIRPDSVTFIGLLTACNHA----------GL 420
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ + NS+ Y + D+ C+ M+G+ G +A E R
Sbjct: 421 VDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGR---------------AGRLNEAEEYMR 465
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ N D V +V +LSA D+ G
Sbjct: 466 KFPFWN---DPVVLVSLLSASRLHGDVVIG 492
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 6/179 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ +E ++FD++ + N+++WN LI+ Y+ + + F ++V FPN+ TL
Sbjct: 129 ANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATL 188
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED------DLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
V+ A A+ F G+ +H E+ D+ + N+LI Y CG + +A VF I
Sbjct: 189 TLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIK 248
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++D++SWN+MI+G G +A++L+ EM+ + PD+VT V VL AC +E G+
Sbjct: 249 RRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGL 307
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 36/176 (20%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR+ FD P+ ++ WNT++ Y +++ +F Q+
Sbjct: 75 ARRYFDLSPERDIVLWNTMVAGYIEMGNMMEARSLFDQM--------------------- 113
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
P + D++ N+++ YA GD+ VF + +++V SWN +I G+
Sbjct: 114 -PCR-------------DVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGY 159
Query: 196 VEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ G + + ++ M E +V P++ T+ +VLSACAK +FG V + E G
Sbjct: 160 AQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLG 215
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
M E ++VI S+I+ Y + DL A F + ++D+V WN+M++G++E G +A L+
Sbjct: 51 MVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNMMEARSLF 110
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLE 237
+M +V ++ VL A D+E
Sbjct: 111 DQMPCRDV----MSWNTVLEGYANIGDME 135
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 29/169 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++E A ++F I + +L +WNT+I ++ ++ +F ++ N P++ T V
Sbjct: 235 GAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEM-KNCGISPDKVTFVGV 293
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A G+ ED L NS+ +++ + CV ++ +
Sbjct: 294 LCACKH----------MGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSR-------- 335
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
GF +A+E +M VK D V +L A + ++ G
Sbjct: 336 -------AGFLTQAVEFINKMP---VKADAVIWATLLGASKVYKKVDTG 374
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 7/200 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ K++HA +L FFD + S L CAL+ + S++YA +F QI +P+ + +NT+IR
Sbjct: 12 EEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIR 71
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ + ++ ++++ ++ P++FT PFV+KA + G +HG E
Sbjct: 72 GNVNDMKLEEALLLYVDMIERGVE-PDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLE 130
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+++ NSLI+ Y CG++ A VF + +K V SW+++I + + + L +M
Sbjct: 131 GDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKM 190
Query: 212 EVEN-VKPDEVTMVVVLSAC 230
E + +E T+V VLSAC
Sbjct: 191 SSEGRCRVEESTLVNVLSAC 210
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 5/175 (2%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++ A +F+ + + ++ +W+ +I A++ + + M+ ++ E TL V
Sbjct: 147 GEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNV 206
Query: 131 IKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A +G+ IHG+ E ++V+ SLI Y G L VF + +K+
Sbjct: 207 LSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNR 266
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
S+ MISG G ++A++++ EM E + PD+V V V SAC+ +E G+
Sbjct: 267 YSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGL 321
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 148 GMFEDDLVISNSLIHFYAVC-----GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
G+F D +SN A C G + A +F I + +N+MI G V E
Sbjct: 25 GIFFDTFCMSN----LVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLE 80
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+A+ LY +M V+PD+ T VL AC+ ++ GI V H+ K G++ D+ +
Sbjct: 81 EALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQ 136
>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 14/227 (6%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
N + +++HA + S+ F D + S L+ C S LE ARK+FD++ + ++ +W
Sbjct: 66 NLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCG----SVLE-ARKVFDEMRRKDMVSW 120
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+LI Y+ +D P ++ + ++ + PN FT ++KAA +G+ IH +
Sbjct: 121 TSLIAGYAQNDMPEEAIGLLPGML-KGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAV 179
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+ +D+ + ++L+ YA CG + MA VF + K+ VSWN++ISGF G E A+
Sbjct: 180 KCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALM 239
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
+ EM + T V S+ A+ LE G WV +H+ K+ KM
Sbjct: 240 TFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKM 286
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 99/200 (49%), Gaps = 14/200 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++IHA + D+ D Y S L + C + ++ A +FD++ N +WN LI
Sbjct: 172 RQIHALAVKCDWHEDVYVGSALLDMYARCGM-----MDMATAVFDKLDSKNGVSWNALIS 226
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDLV 155
++ + + M F +++ N + FT V + AR G+ +H M +
Sbjct: 227 GFARKGDGETALMTFAEMLRNG-FEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQK 285
Query: 156 IS----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ N+L+ YA G + A VF + KD+V+WN+M++ F + G ++A+ + EM
Sbjct: 286 MTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEM 345
Query: 212 EVENVKPDEVTMVVVLSACA 231
+ ++VT + +L+AC+
Sbjct: 346 RKSGIYLNQVTFLCILTACS 365
>gi|255568506|ref|XP_002525227.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535524|gb|EEF37193.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 420
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 14/225 (6%)
Query: 37 KQLKRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K+ + +HA +L++ F D + ++ C +L ARK+FDQ+P ++ TW
Sbjct: 98 KEGQLVHAHLLNSRFKHDLVIQNTILNMYAKCG-----NLGEARKVFDQMPVKDVVTWTA 152
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
LI YS D P + ++F Q++ + PN FTL ++KA+ G+ +H
Sbjct: 153 LITGYSQHDRPKDALLLFPQML-TLGFRPNHFTLSSLLKASGVSPSDSNGRLLHAFCIKY 211
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ ++ + ++L+ YA G L A +F + ++ VSWN++I+G G E A +
Sbjct: 212 GYSCNVYVGSALLDMYARSGHLEEALFIFDGLPSRNEVSWNALIAGCARKGDQELAFSFF 271
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
+M EN++P + T +VLSACA LE G WV + + K+G K+
Sbjct: 272 SKMLRENIQPTQFTYSIVLSACASIGSLEQGKWVHALLIKSGAKL 316
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 8/206 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +HA + + + Y S L A S LE A +FD +P N +WN LI +
Sbjct: 202 RLLHAFCIKYGYSCNVYVGSALLDMYARS--GHLEEALFIFDGLPSRNEVSWNALIAGCA 259
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLV- 155
+ +F F +++ + P +FT V+ A A G+ +H + LV
Sbjct: 260 RKGDQELAFSFFSKMLRENIQ-PTQFTYSIVLSACASIGSLEQGKWVHALLIKSGAKLVD 318
Query: 156 -ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+L+ YA G + A VF + K+DVVSWNSM++G+ + G A+ ++R+M +
Sbjct: 319 FVGNTLLGMYAKSGSIEDARKVFDGLVKRDVVSWNSMLAGYAQHGLGNIALLIFRQMLII 378
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGI 240
V P+++T + VL+AC+ L G+
Sbjct: 379 GVAPNDITFLCVLTACSHAGLLAEGL 404
>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 8/227 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N K+ +H Q + + P+ + + T S + ++ A K F I + ++ +WNTL
Sbjct: 217 NLKRGAELHCQTVKLNLDSTPFIGNVIIT--MYSELNLIQEAEKAFRLIEEKDVISWNTL 274
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----M 149
I A S D+ + +F + + P++FT + A A G+ IH
Sbjct: 275 IAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTR 334
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
DL + N+L++ YA CG + AY +F + ++VSWN++I+GF G E+A+EL+
Sbjct: 335 LYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFE 394
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFG-IWVSSHIEKNGIKMDL 255
+M ++PD VT + +L+AC ++ G ++ +S E GI D+
Sbjct: 395 QMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDI 441
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 20/220 (9%)
Query: 31 HFLTNQKQLK---RIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIP 84
H + K L+ +HA +L T D + ++ ++ C +TF AR++FD++
Sbjct: 11 HHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTF-----ARQVFDEMF 65
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ NL +W+ +I Y + EP + ++ Q+ PNE+ VI A A +GQ
Sbjct: 66 EKNLVSWSAMISGYDQAGEPQMAIDLYSQMFL----VPNEYVFASVISACASLSAVTLGQ 121
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
IH +E +SNSLI Y C + A VF + + VS+N++I+GFVE
Sbjct: 122 KIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQ 181
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
E+ +E ++ M + + PD + VL C +L+ G
Sbjct: 182 QLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRG 221
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 37/210 (17%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + K+IHA ++ T + D + L + C + YA +F ++ NL
Sbjct: 317 LASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCG-----CIGYAYDIFSKMVHHNLV 371
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+WNT+I + + ++ +F Q+ S P+ T ++ A G+
Sbjct: 372 SWNTIIAGFGNHGLGERAVELFEQM-NASGIRPDSVTFIGLLTACNHA----------GL 420
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ + NS+ Y + D+ C+ M+G+ G +A E R
Sbjct: 421 VDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGR---------------AGRLNEAEEYMR 465
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ N D V +V +LSA D+ G
Sbjct: 466 KFPFWN---DPVVLVSLLSASRLHGDVVIG 492
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 46/260 (17%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + K +IH + + + D + S L ++ C L + AR++FD + + N+
Sbjct: 169 LKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGL-----VGCARRVFDGMEEKNVV 223
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+WN LI Y + I++ F ++ + P+E TL V+ A A F+ G IH
Sbjct: 224 SWNCLITCYEQNGPAIEALEAFGRMT-ELGFKPDEVTLASVVSACATLAAFKEGVQIHAR 282
Query: 150 ------FEDDLVISNSLIHFYAVCGDLAMAYCV--------------------------- 176
F +DL++ N+L+ YA CG + A CV
Sbjct: 283 VVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKA 342
Query: 177 ----FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
F I +KD+VSWN++I+G+ + G E+A+ L+R ++ E+V P T +L+A A
Sbjct: 343 ARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASAN 402
Query: 233 KRDLEFGIWVSSHIEKNGIK 252
DLE G SH+ K+G +
Sbjct: 403 LADLELGRQAHSHVVKHGFR 422
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+S++ AR MF I Q ++ +WN LI Y+ + E ++ +F +++ P +T +
Sbjct: 338 ASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLF-RMLKRESVCPTHYTFGNL 396
Query: 131 IKAAARPVQFRVGQAIHGMF-----------EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
+ A+A +G+ H E D+ + NSLI Y CG + VF
Sbjct: 397 LNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFEN 456
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ +KD VSWN+MI G+ + G+ +A+EL+++M KPD VTM+ L AC+ +E G
Sbjct: 457 MVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEG 516
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 121/253 (47%), Gaps = 39/253 (15%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT-- 90
L + + + +H +++ T F + + ++L + L+YARK+FD++ + N+++
Sbjct: 37 LRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGY--LDYARKVFDRMSERNVFSFN 94
Query: 91 -----------------------------WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
WN++I ++ D ++ F+++ + +
Sbjct: 95 SIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRM-HRDDFV 153
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCV 176
N+++ + A +R ++G IHG+ D+ + + LI FY+ CG + A V
Sbjct: 154 LNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRV 213
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + +K+VVSWN +I+ + + G +A+E + M KPDEVT+ V+SACA
Sbjct: 214 FDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAF 273
Query: 237 EFGIWVSSHIEKN 249
+ G+ + + + K+
Sbjct: 274 KEGVQIHARVVKS 286
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 36/151 (23%)
Query: 141 RVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF------------------ 177
R +++HG F +++ I N LI Y CG L A VF
Sbjct: 41 RDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTL 100
Query: 178 -------------VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
++ +KD SWNSMI+GF + FE+A++ + M ++ ++ +
Sbjct: 101 MRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFG 160
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
LSAC++ +DL+ G + I K+ +D+
Sbjct: 161 SGLSACSRLKDLKLGAQIHGLISKSKYSLDV 191
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H TN +K+IHAQ++ DPY A KL +L+ ++L A +F+Q+P PN++
Sbjct: 30 HKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIASYSLT--NNLSSAVNVFNQVPDPNVHL 87
Query: 91 WNTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAA-ARPVQFRVGQAIH 147
+N LIRAYS S S F L ++ + FT PF++K + + +H
Sbjct: 88 YNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVH 147
Query: 148 GMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
E D+ + NSLI Y CGD+ MA VF + ++DVVSWNSM+ G V+ G +
Sbjct: 148 AHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLD 207
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
A++++ EM + D V+ +L K +++
Sbjct: 208 GALKVFDEMP----ERDRVSWNTMLDGFTKAGEMD 238
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C S ++ AR +FD+ P NL W T+I Y+ + ++ + ++ + +
Sbjct: 260 CGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDG 319
Query: 125 FTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVF-V 178
F + ++ A A +G+ +H F + NS I YA CG + A+ VF
Sbjct: 320 FFIS-ILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNG 378
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
M +KD+VSWNSMI GF G EK+IEL+ M E KPD T + +L AC
Sbjct: 379 MKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCAC 430
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 98/204 (48%), Gaps = 12/204 (5%)
Query: 39 LKRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+K +HA + F++D P S + C +E A K+F + + ++ +WN+++
Sbjct: 143 VKMVHAHVEKLGFYWDIFVPNSLIDCYCRCG-----DVEMAMKVFSGMEERDVVSWNSMV 197
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV 155
+ + + +F ++ N F KA F++ + M E D+V
Sbjct: 198 GGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFT-KAGEMDKAFKLFER---MAERDIV 253
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
++++ Y+ GD+ MA +F K++V W ++ISG+ E G ++A+ L EME
Sbjct: 254 SWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSG 313
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG 239
++ D+ + +L+ACA+ L G
Sbjct: 314 LRLDDGFFISILAACAESGMLGLG 337
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 7/240 (2%)
Query: 16 NPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY 75
NPTT + + LK+IHAQ+ D S +KL C +L Y
Sbjct: 30 NPTTGLSQQSCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNY 89
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A KMF I P L +N +I+A++ ++ ++F +L + +P+ FT PFV KA
Sbjct: 90 AEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDG-LWPDNFTYPFVFKAIG 148
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ + + G+ E D + NSLI YA + +F + +DV+SWN
Sbjct: 149 YLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNV 208
Query: 191 MISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
MISG+V+ FE AI ++ M+ E+ + PDE T+V LSAC + LE G + ++ N
Sbjct: 209 MISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDN 268
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 37/258 (14%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
+L + +++ + T FD Y + L A + + + +FD++P ++ +W
Sbjct: 149 YLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDV--MKMLFDEMPDRDVISW 206
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
N +I Y + +F ++ S P+E T+ + A + +G+ IH
Sbjct: 207 NVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVR 266
Query: 152 DDL----VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG-------- 199
D++ +I N+L+ Y CG L++A VF + K+V+ W +M+SG+ G
Sbjct: 267 DNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEAREL 326
Query: 200 -----------------------FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F++A+ L+REM++ VKPD+ +V +L+ CA+ +
Sbjct: 327 FEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAI 386
Query: 237 EFGIWVSSHIEKNGIKMD 254
E G W+ I++N I +D
Sbjct: 387 EQGKWIHEFIDENRIPID 404
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDE-----------PIQSFMIFLQLVYNSP 119
L AR +F+++P N+ W T++ Y++ E PI+ +I+ ++
Sbjct: 287 GCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYV 346
Query: 120 YF-------------------PNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLV 155
F P++F + ++ A+ G+ IH ++ D V
Sbjct: 347 QFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAV 406
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ +LI YA CG + A +F + KD SW S+I G G KA+EL+ +M+
Sbjct: 407 VGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAG 466
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG 239
V+PD++T + VLSAC+ +E G
Sbjct: 467 VRPDDITFIGVLSACSHGGLVEEG 490
>gi|449451962|ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 17/227 (7%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++ +IH M+ T DP++ SKL L ++YA +F +I PNL+ +NT++R
Sbjct: 43 KISQIHCYMVKTALDLDPFTLSKLLASAILD----IKYAASIFREIRNPNLFMFNTMLRG 98
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI--------HGM 149
YS+S++ Q+F+IF L N + P+ F+ +KA AR + VG+ I HG+
Sbjct: 99 YSNSNDSKQAFVIFNDL-RNQDFLPDRFSFITTLKACARELAIHVGKGIHGIVHKSGHGL 157
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-DVVSWNSMISGFVEGGFFEKAIELY 208
F D ++N L+HFY C + A+ +F I ++ D+VSWN+++ G++ ++ +
Sbjct: 158 FND---VNNILLHFYGACEQIKDAHKLFDEISQRNDLVSWNTLMDGYLRASQPIVVLDTF 214
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
R+M + + T++ V SA + G + H K G+ +L
Sbjct: 215 RQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYGHCIKLGLGSNL 261
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 7/188 (3%)
Query: 76 ARKMFDQIPQPN-LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
A K+FD+I Q N L +WNTL+ Y + +PI F Q+ N TL V A
Sbjct: 178 AHKLFDEISQRNDLVSWNTLMDGYLRASQPIVVLDTFRQMC-RRGLIANTGTLLSVASAV 236
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
G++++G +L + LI Y GDL A +F + +KDV+ WN
Sbjct: 237 GDVGNTMDGRSLYGHCIKLGLGSNLRVVTCLIDMYGKFGDLDEAGTIFNEVAEKDVIVWN 296
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+I + + G +KA+ M++E +KP+ T+ ++SACA + G +++++ +
Sbjct: 297 CLIDNYAKNGLIKKAVASLHLMKLEGMKPNSSTLAGLISACATSGAVSTGKYLANYADNE 356
Query: 250 GIKMDLTF 257
G+ +D+
Sbjct: 357 GLDLDVVL 364
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 20/203 (9%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F L+ A +F+++ + ++ WN LI Y+ + I+ + L L+ PN TL
Sbjct: 274 FGDLDEAGTIFNEVAEKDVIVWNCLIDNYAK-NGLIKKAVASLHLMKLEGMKPNSSTLAG 332
Query: 130 VIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+I A A G+ + ++ D+V+ +LI YA G L A +F + KD
Sbjct: 333 LISACATSGAVSTGKYLANYADNEGLDLDVVLGTTLIGMYAKFGFLDKAIDIFDKMKNKD 392
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA------------CAK 232
V +W +MI+G+ + G K +E ME E +P+E+T + VL+A C K
Sbjct: 393 VKTWTAMITGYGDHGQTRKVMETLYRMEEEGFRPNEITFLAVLNAYSHGGIVAEGMKCFK 452
Query: 233 KRDLEFGIWVSSHIEKNGIKMDL 255
+ E+GI + IE G +DL
Sbjct: 453 RMVYEYGI--TPKIEHYGCIIDL 473
>gi|449488709|ref|XP_004158148.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Cucumis sativus]
Length = 556
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 17/227 (7%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++ +IH M+ T DP++ SKL L ++YA +F +I PNL+ +NT++R
Sbjct: 43 KISQIHCYMVKTALDLDPFTLSKLLASAILD----IKYAASIFREIRNPNLFMFNTMLRG 98
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI--------HGM 149
YS+S++ Q+F+IF L N + P+ F+ +KA AR + VG+ I HG+
Sbjct: 99 YSNSNDSKQAFVIFNDL-RNQDFLPDRFSFITTLKACARELAIHVGKGIHGIVHKSGHGL 157
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-DVVSWNSMISGFVEGGFFEKAIELY 208
F D ++N L+HFY C + A+ +F I ++ D+VSWN+++ G++ ++ +
Sbjct: 158 FND---VNNILLHFYGACEQIKDAHKLFDEISQRNDLVSWNTLMDGYLRASQPIVVLDTF 214
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
R+M + + T++ V SA + G + H K G+ +L
Sbjct: 215 RQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYGHCIKLGLGSNL 261
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 45/198 (22%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F L+ A +F+++ + ++ WN LI A ++S V Y N
Sbjct: 274 FGDLDEAGTIFNEVAEKDVIVWNCLISACATSGA-----------VSTGKYLAN------ 316
Query: 130 VIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A + + D+V+ +LI YA G L A +F + KDV +W
Sbjct: 317 --------------YADNEGLDLDVVLGTTLIGMYAKFGFLDKAIDIFDKMKNKDVKTWT 362
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA------------CAKKRDLE 237
+MI+G+ + G K +E ME E +P+E+T + VL+A C K+ E
Sbjct: 363 AMITGYGDHGQTRKVMETLYRMEEEGFRPNEITFLAVLNAYSHGGIVAEGMKCFKRMVYE 422
Query: 238 FGIWVSSHIEKNGIKMDL 255
+GI + IE G +DL
Sbjct: 423 YGI--TPKIEHYGCIIDL 438
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 7/163 (4%)
Query: 76 ARKMFDQIPQPN-LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
A K+FD+I Q N L +WNTL+ Y + +PI F Q+ N TL V A
Sbjct: 178 AHKLFDEISQRNDLVSWNTLMDGYLRASQPIVVLDTFRQMC-RRGLIANTGTLLSVASAV 236
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
G++++G +L + LI Y GDL A +F + +KDV+ WN
Sbjct: 237 GDVGNTMDGRSLYGHCIKLGLGSNLRVVTCLIDMYGKFGDLDEAGTIFNEVAEKDVIVWN 296
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
+IS G L + E + D V ++ AK
Sbjct: 297 CLISACATSGAVSTGKYLANYADNEGLDLDVVLGTTLIGMYAK 339
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 119/222 (53%), Gaps = 9/222 (4%)
Query: 40 KRIHAQM-LSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+R+H + ST F D +++ T S S +R +FD++ + NL+ WN ++ AY
Sbjct: 125 RRLHEMVSASTQFCNDFVLNTRIIT--MYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAY 182
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ ++ + IF +L+ + + P+ FTLP VIKA A + +GQ IHGM D
Sbjct: 183 TRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSD 242
Query: 154 LVISNSLIHFYAVCGDLAMAYC-VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ + N+LI Y CG + A VF ++ K V SWN+++ G+ + KA++LY +M
Sbjct: 243 VFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMT 302
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ PD T+ +L AC++ + L +G + +NG+ +D
Sbjct: 303 DSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVD 344
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 105/208 (50%), Gaps = 12/208 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTP--CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+ IH L DP+ L + C F+ A+ +FD + +L +WN +I
Sbjct: 330 EEIHGFALRNGLAVDPFIGISLLSLYICCGKPFA----AQVLFDGMEHRSLVSWNVMIAG 385
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFED 152
YS + P ++ +F Q++ + P E + V A ++ R+G+ +H +
Sbjct: 386 YSQNGLPDEAINLFRQMLSDGIQ-PYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTE 444
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ +S+S+I YA G + ++ +F + +KDV SWN +I+G+ G ++A+EL+ +M
Sbjct: 445 DIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKML 504
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGI 240
+KPD+ T +L AC+ +E G+
Sbjct: 505 RLGLKPDDFTFTGILMACSHAGLVEDGL 532
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 84/210 (40%), Gaps = 37/210 (17%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +H L D + +S + A L ++++FD++ + ++ +WN +I Y
Sbjct: 431 KELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGL--SQRIFDRLREKDVASWNVIIAGYG 488
Query: 100 ---SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
E ++ F L+L P++FT ++ A + G+ ED L
Sbjct: 489 IHGRGKEALELFEKMLRLGLK----PDDFTFTGILMACSHA----------GLVEDGLEY 534
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N +++ + + L CV M+G+ G + A+ L EM +
Sbjct: 535 FNQMLNLHNIEPKLEHYTCVVDMLGR---------------AGRIDDALRLIEEMPGD-- 577
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
PD +LS+C +L G V++ +
Sbjct: 578 -PDSRIWSSLLSSCRIHGNLGLGEKVANKL 606
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 14/210 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q+K++HA M+ F DP + +L ++ +AR +FD+IP P+ + +NTLIR
Sbjct: 22 RQIKQVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDRIPHPDRFMYNTLIR 81
Query: 97 AYSSSDEPIQSFMIFLQLVYNSP-----YFPNEFTLPFVIKAAARPVQFRVGQAIHGMF- 150
+ S P + I+ ++ +S P++ T PFV++A A G +H
Sbjct: 82 GAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQVHAHVV 141
Query: 151 ----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
E D + N+LI +A CGDL A +F ++D V+W++MISGF G A E
Sbjct: 142 KAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARE 201
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDL 236
L+ E V+ D V+ V+++A AK D+
Sbjct: 202 LFDESPVK----DLVSWNVMITAYAKLGDM 227
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + + AR++FD P ++ +WN +I Y Q+ +F Q+ P+
Sbjct: 220 AYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEK-PDTV 278
Query: 126 TLPFVIKAAARPVQFRVGQAIH----GMFED---DLVISNSLIHFYAVCGDLAMAYCVFV 178
T+ ++ A A G+ +H G F V+ N+LI YA CG + A VF
Sbjct: 279 TMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFW 338
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++ K+V +WNS+I G G +AI+++++M NVKPDE+T V VL AC+
Sbjct: 339 LMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACS 391
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
DLV N +I YA GD+A A +F +DVVSWN+MISG+V G ++A+EL+ +M+
Sbjct: 210 DLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQ 269
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFG 239
KPD VTM+ +LSACA D++ G
Sbjct: 270 AMGEKPDTVTMLSLLSACADSGDMDAG 296
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE------NVKP 218
V G A A VF I D +N++I G A+ +Y M V+P
Sbjct: 53 GVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRP 112
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
D+ T VL ACA E G V +H+ K G + D
Sbjct: 113 DKRTFPFVLRACAAMGASETGAQVHAHVVKAGCESD 148
>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06140, mitochondrial; Flags: Precursor
gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
from Arabidopsis thaliana gb|AC008153 and contains
multiple PPR PF|01535 repeats [Arabidopsis thaliana]
gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 558
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 106/184 (57%), Gaps = 11/184 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++ C L L+ ARK+F+ N+ W TLI ++ + +++F +F Q++ S
Sbjct: 255 MYVKCRL-----LDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRES-I 308
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYC 175
PN+ TL ++ + + R G+++HG E D V S I YA CG++ MA
Sbjct: 309 LPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMART 368
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF M+ +++V+SW+SMI+ F G FE+A++ + +M+ +NV P+ VT V +LSAC+ +
Sbjct: 369 VFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGN 428
Query: 236 LEFG 239
++ G
Sbjct: 429 VKEG 432
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 9/219 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH + D Y A L A ++E A+K+FD+IP N W L++ Y
Sbjct: 131 IHGLAMKNGLDKDDYVAPSLVEMYA--QLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKY 188
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FEDDLV 155
+ + F +F L+ ++ + TL ++KA +VG+ +HG+ +
Sbjct: 189 SKDPEVFRLFC-LMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDY 247
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ S+I Y C L A +F ++VV W ++ISGF + +A +L+R+M E+
Sbjct: 248 LQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRES 307
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ P++ T+ +L +C+ L G V ++ +NGI+MD
Sbjct: 308 ILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMD 346
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 16/203 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP--QPNLYTWNTLIRA 97
+++HA+++ F + S L A + L++A F++IP + N ++WNT++
Sbjct: 24 QQVHAKVIIHGFEDEVVLGSSLTN--AYIQSNRLDFATSSFNRIPCWKRNRHSWNTILSG 81
Query: 98 YSSSDEPIQSFMIFLQLVYNSPY----FPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
YS S S ++ L YN + F L F IKA G IHG+
Sbjct: 82 YSKSKTCCYSDVLLL---YNRMRRHCDGVDSFNLVFAIKACVGLGLLENGILIHGLAMKN 138
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ D ++ SL+ YA G + A VF I ++ V W ++ G+++ + L+
Sbjct: 139 GLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLF 198
Query: 209 REMEVENVKPDEVTMVVVLSACA 231
M + D +T++ ++ AC
Sbjct: 199 CLMRDTGLALDALTLICLVKACG 221
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 146 IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI--GKKDVVSWNSMISGFVEGG--FF 201
IHG FED++V+ +SL + Y L A F I K++ SWN+++SG+ + +
Sbjct: 32 IHG-FEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNTILSGYSKSKTCCY 90
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ LY M D +V + AC LE GI + KNG+ D
Sbjct: 91 SDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGILIHGLAMKNGLDKD 143
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 8/224 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K L +IH+Q+ + D + ++L +LS L YA+ + D P WN LIR
Sbjct: 678 KHLYQIHSQIQVSGLQGDTFLVTQLIKFSSLSPSKDLSYAQSILDHSVHPVPLPWNILIR 737
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMF 150
Y+ S+ P + ++ + N PN T PF++KA A + G+ +H G+
Sbjct: 738 GYADSNTPKDALFVYRNM-RNEGIRPNSLTFPFLLKACAACFATKEGKQVHVEVIKYGL- 795
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ D+ ++N+L++FY C + A VF + ++ VVSWN++I+ VE +AI + +
Sbjct: 796 DCDVYVNNNLVNFYGSCKKILDACKVFDEMPERTVVSWNAVITSCVESLKLGEAIRYFLK 855
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
M +PD TMV++L CA+ +L G W+ S + + G+ ++
Sbjct: 856 MRDFGFEPDGTTMVLMLVICAEMGNLGLGRWIHSQVIERGLVLN 899
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 105/204 (51%), Gaps = 15/204 (7%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K+ K++H +++ D Y + L + C + A K+FD++P+ + +WN
Sbjct: 781 KEGKQVHVEVIKYGLDCDVYVNNNLVNFYGSC-----KKILDACKVFDEMPERTVVSWNA 835
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFED 152
+I + S + ++ FL++ + + P+ T+ ++ A +G+ IH + E
Sbjct: 836 VITSCVESLKLGEAIRYFLKM-RDFGFEPDGTTMVLMLVICAEMGNLGLGRWIHSQVIER 894
Query: 153 DLVIS----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
LV++ +L+ YA G + A VF + +K+V +W++MI G + GF ++ +EL+
Sbjct: 895 GLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQHGFAKEGLELF 954
Query: 209 REMEVEN-VKPDEVTMVVVLSACA 231
+M + + P+ VT + VL AC+
Sbjct: 955 LDMMRSSLIHPNYVTFLGVLCACS 978
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN +I G+ + + A+ +YR M E ++P+ +T +L ACA + G V +
Sbjct: 732 WNILIRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAACFATKEGKQVHVEVI 791
Query: 248 KNGIKMDL 255
K G+ D+
Sbjct: 792 KYGLDCDV 799
>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 125/244 (51%), Gaps = 17/244 (6%)
Query: 21 TVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYAR 77
T+ N + L KQ K +H ++++ F D S ++ C SLE AR
Sbjct: 92 TIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCG-----SLEIAR 146
Query: 78 KMFDQIPQPNLYTWNTLIRAYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
++FD++ ++ TW ++I YS + + ++FL++V + PNEF L ++K
Sbjct: 147 QVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDG-LRPNEFALSSLVKCC 205
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
G+ IHG F++++ + +SL+ YA CG+L + VF + K+ VSWN
Sbjct: 206 GFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWN 265
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
++ISGF G E+A+ L+ +M+ E E T +L + + LE G W+ +H+ K+
Sbjct: 266 ALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKS 325
Query: 250 GIKM 253
G K+
Sbjct: 326 GKKL 329
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 118/234 (50%), Gaps = 15/234 (6%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNL 88
FL + K+IH F + + S L + C L +R +FD++ N
Sbjct: 207 FLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCG-----ELRESRLVFDELESKNE 261
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+WN LI ++ E ++ +F+++ + EFT ++ +++ G+ +H
Sbjct: 262 VSWNALISGFARKGEGEEALGLFVKM-QREGFGATEFTYSALLCSSSTTGSLEQGKWLHA 320
Query: 149 MF---EDDLV--ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
LV + N+L+H YA G++ A VF + K DVVS NSM+ G+ + G ++
Sbjct: 321 HMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKE 380
Query: 204 AIELYREMEV-ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
A+EL+ EM + ++P+++T + VL+AC+ L+ G++ ++K G++ L+
Sbjct: 381 AVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLS 434
>gi|255562460|ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538489|gb|EEF40094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 6/187 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A ++FD++ ++ +WN++I ++D P + +F +++Y F + TL V+
Sbjct: 251 IEAAYEVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSF-DLVTLVNVLA 309
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A F +G+ +H + + N+L+ Y+ CGDL A VF +G++ VVS
Sbjct: 310 ACANSGNFPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQKMGERSVVS 369
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W S+I+G+ G + I L+ EME E V+PD T+ VL ACA LE G V +++
Sbjct: 370 WTSLIAGYAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLHACACSGSLEIGKDVHDYVK 429
Query: 248 KNGIKMD 254
+N ++ D
Sbjct: 430 ENNMQKD 436
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 7/193 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S L A ++F ++ + ++ +W +LI Y+ + +F ++ P+ FT+
Sbjct: 347 SKCGDLNNAIRVFQKMGERSVVSWTSLIAGYAREGLSGEGIRLFHEMEREGVR-PDNFTV 405
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A +G+ +H ++ D ++ NSL+ YA CG + A VF+ +
Sbjct: 406 TAVLHACACSGSLEIGKDVHDYVKENNMQKDRIVCNSLMDMYAKCGSMEDANLVFLEMPN 465
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
KD+VSWN+MI G+ + G + + L+ M V+ +KPD TM +L ACA L+ G +
Sbjct: 466 KDIVSWNTMIGGYSKNGRPNETLHLFVAM-VQELKPDGRTMACILPACASLAALDRGREI 524
Query: 243 SSHIEKNGIKMDL 255
+I++NG DL
Sbjct: 525 HGYIQRNGCFDDL 537
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 14/233 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + ++ K++H+ + S+ F D +KL + C + R +FD+I ++
Sbjct: 112 LNSLQEGKKVHSFISSSGIFVDGLLGTKLVFMYVNCG-----DIREGRVIFDKIANEKVF 166
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
WN ++ Y+ +S +F +++ + N T+ ++K A + G+ +HG
Sbjct: 167 LWNLMLSGYAKIGAFEESVYLFRKML-DLGIQVNSHTVSCILKCFAALGSVKEGEWVHGY 225
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
F + NSLI FY + AY VF + +D+VSWNSMISG V EK
Sbjct: 226 LLKLGFGSYNTVVNSLISFYFKTRKIEAAYEVFDELKNRDIVSWNSMISGTVANDLPEKG 285
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
I++++EM V D VT+V VL+ACA + G + + K + +TF
Sbjct: 286 IQVFKEMLYLGVSFDLVTLVNVLAACANSGNFPLGRVLHAFAIKAQLDQRMTF 338
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 23/189 (12%)
Query: 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL 73
H + ++ G H + N Q RI S ++ C S+
Sbjct: 410 HACACSGSLEIGKDVHDYVKENNMQKDRIVCN-----------SLMDMYAKCG-----SM 453
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A +F ++P ++ +WNT+I YS + P ++ +F+ +V P+ T+ ++ A
Sbjct: 454 EDANLVFLEMPNKDIVSWNTMIGGYSKNGRPNETLHLFVAMV--QELKPDGRTMACILPA 511
Query: 134 AARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A G+ IHG + DDL ++N+LI YA CG LA+A F MI KD++SW
Sbjct: 512 CASLAALDRGREIHGYIQRNGCFDDLHVANALIDMYAKCGALALARLFFDMIPVKDLISW 571
Query: 189 NSMISGFVE 197
MI+G ++
Sbjct: 572 TVMIAGDID 580
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H +L F Y + L A S + E ARK F+ + QP+L W ++I Y
Sbjct: 333 KQVHNYLLKLGFESQLYIMTALVDMYAKSGVT--EDARKGFNYLQQPDLVLWTSMIAGYV 390
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ E + ++ ++ PNE T+ V+KA + F G+ IH ++
Sbjct: 391 QNGENEDALSLYCRMQMEG-ILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEV 449
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L YA CG+L VF + ++D++SWN+MISG + G+ ++A+EL+ EM +
Sbjct: 450 TIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQ 509
Query: 215 NVKPDEVTMVVVLSACA 231
+ KPD+VT V VLSAC+
Sbjct: 510 DTKPDDVTFVNVLSACS 526
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 8/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++ HA + F+D + S L + L AR++FD++P+ N TW T+I Y+
Sbjct: 131 QQAHAVAIKMACFYDVFVGSSLLNMYCKAGL--LFEAREVFDRMPERNEVTWATMISGYA 188
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----L 154
++F +F +L+ NEF V+ A A P G+ IH + L
Sbjct: 189 IQRLAGEAFEVF-ELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFL 247
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I N+L+ YA CG L + VF M K+ ++W++MI+G+ + G KA++L+ M
Sbjct: 248 SILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFA 307
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ P E T+V VL+AC+ +E G V +++ K G + L
Sbjct: 308 GINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQL 348
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 17/235 (7%)
Query: 30 PHFLTNQKQLKRIHAQMLSTDF--FFDPYSA-SKLFTPCALSTFSSLEYARKMFDQIPQP 86
P F+ + KQ IH + T F +A ++ C SL+ + ++F+
Sbjct: 225 PEFVDSGKQ---IHCLAVKTGLLVFLSILNALVTMYAKCG-----SLDDSLQVFEMSNDK 276
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
N TW+ +I Y+ S + ++ +F ++ + + P+EFTL V+ A + G+ +
Sbjct: 277 NSITWSAMITGYAQSGDSHKALKLFSRMHF-AGINPSEFTLVGVLNACSDACAVEEGKQV 335
Query: 147 HGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
H FE L I +L+ YA G A F + + D+V W SMI+G+V+ G
Sbjct: 336 HNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGEN 395
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
E A+ LY M++E + P+E+TM VL AC+ + G + + K G+ +++T
Sbjct: 396 EDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVT 450
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 34 TNQKQLKR---IHAQML----STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP 86
T+QK L++ +HAQ++ S+ + S + C L A+ +FD+I
Sbjct: 18 THQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCC-----HLPKAKLVFDRIHNK 72
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFL-QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
++ +WN LI YS SF++ L Q + PN T + AA+ GQ
Sbjct: 73 DVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQ 132
Query: 146 IHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
H + D+ + +SL++ Y G L A VF + +++ V+W +MISG+
Sbjct: 133 AHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRL 192
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+A E++ M E +E VLSA A
Sbjct: 193 AGEAFEVFELMRREEEDVNEFAFTSVLSALA 223
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 143 GQAIHGMF------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
G+A+H + ++NSLI+FYA C L A VF I KDV+SWN +I+G+
Sbjct: 26 GRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYS 85
Query: 197 EGGFFEKA--IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ G + +EL++ M +N+ P+ T + +A + + FG
Sbjct: 86 QQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFG 130
>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09410-like [Glycine max]
Length = 669
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 102/182 (56%), Gaps = 5/182 (2%)
Query: 52 FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF 111
+ D + + + T C ++ ARK+FDQIP+ N+ +WNT+I Y+ + ++ +F
Sbjct: 310 YKDMAAWTAMITACVDEGL--MDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGEALNLF 367
Query: 112 LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA--IHGMFEDDLVISNSLIHFYAVCGD 169
+ L+ S + PNE T+ V+ + V+ A IH FE + ++N+LI Y+ GD
Sbjct: 368 V-LMLRSCFRPNETTMTSVVTSCDGMVELMQAHAMVIHLGFEHNTWLTNALITLYSKSGD 426
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L A VF + KDVVSW +MI + G A++++ M V +KPDEVT V +LSA
Sbjct: 427 LCSARLVFEQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPDEVTFVGLLSA 486
Query: 230 CA 231
C+
Sbjct: 487 CS 488
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ L+ ARK+FD + Q N ++W +LI Y S + ++ +F Q+ N +
Sbjct: 138 AKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLFDQMPER-----NVVSW 192
Query: 128 PFVIKAAAR-PVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
V+ AR + G+ + M E +++ +++ Y G + AY +F+ + +++V
Sbjct: 193 TMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEMPERNVR 252
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
SWN MISG + ++AI L+ M N V+ ++S A+ +
Sbjct: 253 SWNIMISGCLRANRVDEAIGLFESMPDRN----HVSWTAMVSGLAQNK 296
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 37/160 (23%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
L L+ ARK+FD++PQ + ++N++I Y + + +++ +F +
Sbjct: 75 LGRHGKLDEARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAETVFKE------------- 121
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
M + ++V +++I YA G L A VF + +++
Sbjct: 122 ----------------------MPQRNVVAESAMIDGYAKVGRLDDARKVFDNMTQRNAF 159
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
SW S+ISG+ G E+A+ L+ +M NV TMVV+
Sbjct: 160 SWTSLISGYFSCGKIEEALHLFDQMPERNVV--SWTMVVL 197
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 74/148 (50%), Gaps = 12/148 (8%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+++A + F +P+ N+ W +++AY + +++ +FL++ P + I
Sbjct: 205 MDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEM-------PERNVRSWNIM 257
Query: 133 AAARPVQFRVGQAIHGMFED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ RV +AI G+FE + V +++ A + +A F ++ KD+ +W
Sbjct: 258 ISGCLRANRVDEAI-GLFESMPDRNHVSWTAMVSGLAQNKMIGIARKYFDLMPYKDMAAW 316
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENV 216
+MI+ V+ G ++A +L+ ++ +NV
Sbjct: 317 TAMITACVDEGLMDEARKLFDQIPEKNV 344
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 124/268 (46%), Gaps = 68/268 (25%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
LK+IHA ++ F + + +L A++ ++ YA ++F QI +P+++ WNT++R
Sbjct: 29 LKQIHATLIIKGFNSNRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWNTMMRGS 88
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
S S P + +++ Q+ N P++FT F++K R + G +HG FE +
Sbjct: 89 SQSKNPSKVVLLYTQM-ENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVN 147
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK------------------------------- 182
+ N+LI+F++ CGDL +A +F + +
Sbjct: 148 SFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPV 207
Query: 183 KDVVSWNSMISGFVEGGFFE-------------------------------KAIELYREM 211
KD+VSWN MI+G+V+ G E +A+E++ EM
Sbjct: 208 KDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEM 267
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
PDEVTM+ +LSACA DL+ G
Sbjct: 268 RNVGECPDEVTMLSLLSACADLGDLQVG 295
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E AR +FD+ P+ ++ TWNT+I Y E Q+ +F ++ N P+E T+ +
Sbjct: 224 GEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEM-RNVGECPDEVTMLSL 282
Query: 131 IKAAARPVQFRVGQAIHG----MFEDDL--VISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+ A A +VG+ +H M DL ++ N+L+ YA CG + +A VF + +KD
Sbjct: 283 LSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMREKD 342
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREME-VENVKPDEVTMVVVLSACAKKRDLEFG 239
V +WNS+I G G E++I+L+ EM+ ++N+KP+E+T V V+ AC+ ++E G
Sbjct: 343 VTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEEG 398
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
+ G + A+ VF I + D+ WN+M+ G + K + LY +ME VKPD+ T
Sbjct: 59 ISGAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSF 118
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+L C + + G V + K G +++
Sbjct: 119 LLKGCTRLEWRKTGFCVHGKVLKYGFEVN 147
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 28/169 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+E A ++F ++ + ++ TWN++I + +S +F ++ PNE T V
Sbjct: 326 GSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGV 385
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
I A + G+ + + I ++IH C+ ++G+
Sbjct: 386 IVACSHAGNVEEGRRYFKLMRERYDIEPNMIHH----------GCMVDLLGR-------- 427
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G +A EL +ME+E P+ + +L AC ++E G
Sbjct: 428 -------AGLLSEAFELIAKMEIE---PNAIIWRTLLGACRVHGNVELG 466
>gi|255572686|ref|XP_002527276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533369|gb|EEF35120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 129/291 (44%), Gaps = 48/291 (16%)
Query: 3 TLSTPVISIPRHPNP---TTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSAS 59
++ P I IP NP L RH + Q+ IHA+++ ++ D +
Sbjct: 120 NIALPPILIPNSKNPPNRKQLISLLQSCRHSN------QITPIHAKIIRNNYHNDAFVVF 173
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
+L C S SS+ YA K+F PN+Y + LI + S I ++ Q++ N
Sbjct: 174 ELLRVC--SNLSSINYASKIFSFTENPNVYLYTALIDGFVLSGSFISGIHLYYQMI-NLS 230
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLA--- 171
P+ + + V++A + + G +H ++ L+ FY CG L
Sbjct: 231 IVPDNYVITSVLEACGFQLALKQGIQVHCQVLKLGLSSKRLMRLKLMKFYGKCGSLKDAE 290
Query: 172 ----------------------------MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
A VF + KD V W ++I G V G +
Sbjct: 291 RLFDEMPERDVVASTIMINSYFEHGLIQEAIRVFNLTKSKDTVCWTAVIDGLVRNGEMNR 350
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
A+E++REM+ E+V+P+EVT+V VLSAC++ LE G WV S++ K GI ++
Sbjct: 351 ALEVFREMQREDVRPNEVTIVCVLSACSQLGTLELGRWVHSYMGKYGIGIN 401
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ A ++F+ + W +I + E ++ +F ++ PNE T+ V+
Sbjct: 317 IQEAIRVFNLTKSKDTVCWTAVIDGLVRNGEMNRALEVFREM-QREDVRPNEVTIVCVLS 375
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A ++ +G+ +H + + +LI+ Y+ CGD+ A+ VF + +++V++
Sbjct: 376 ACSQLGTLELGRWVHSYMGKYGIGINHFVGGALINMYSRCGDIDEAWRVFEEMKERNVIT 435
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC-AKKRDLEFGI 240
+NSMI GF G +AIEL+R M + ++P VT V L +K +D F I
Sbjct: 436 YNSMIVGFSLHGKSSEAIELFRGMTKQGLEPTSVTFVDKLEKLHSKSKDKLFQI 489
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 115/218 (52%), Gaps = 7/218 (3%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
H+ + DP++A L T A + + ARK+FD+IP + +WN++I Y+ +
Sbjct: 145 HSLLFKLALHSDPHTAHSLIT--AYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAG 202
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVIS 157
++ +F ++ + P+E +L ++ A +G+ + G + + I
Sbjct: 203 CAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIG 262
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
++LI YA CG+L A +F + +DV++WN++ISG+ + G ++AI L+ M+ + V
Sbjct: 263 SALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVT 322
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+++T+ VLSACA L+ G + + + G + D+
Sbjct: 323 ANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDI 360
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 11/228 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI-PQPNLYTWN 92
++ K L+++H QM+ P + L L F Y+ +F I P PN Y +N
Sbjct: 35 SSTKTLQQVHTQMVVNSSIHTP-NNHLLSKAIHLKNFP---YSSLLFSHIAPHPNDYAFN 90
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+IRA +++ + + + P+ FT PF + A A H +
Sbjct: 91 IMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFK 150
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
D ++SLI YA CG +A A VF I +D VSWNSMI+G+ + G +A+E+
Sbjct: 151 LALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEV 210
Query: 208 YREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+REM + +PDE+++V +L AC + DLE G WV + + G+ ++
Sbjct: 211 FREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLN 258
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE AR++FD + ++ TWN +I Y+ + ++ ++F + + N+ TL V+
Sbjct: 275 LESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDC-VTANKITLTAVLS 333
Query: 133 AAARPVQFRVGQAI-----HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A +G+ I F+ D+ ++ +LI YA G L A VF + +K+ S
Sbjct: 334 ACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEAS 393
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVE--NVKPDEVTMVVVLSAC 230
WN+MIS G ++A+ L++ M E +P+++T V +LSAC
Sbjct: 394 WNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSAC 438
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 31/201 (15%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+I F D + A+ L A S SL+ A+++F +PQ N +WN +I A +
Sbjct: 345 KQIDEYASQRGFQHDIFVATALIDMYAKS--GSLDNAQRVFKDMPQKNEASWNAMISALA 402
Query: 100 SSDEPIQSFMIFLQLV-YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISN 158
+ + ++ +F + PN+ T ++ A G+ ++ + +
Sbjct: 403 AHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHA----------GLVDEGYRLFD 452
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
M +F ++ K + ++ M+ G +A +L R+M KP
Sbjct: 453 -------------MMSTLFGLVPK--IEHYSCMVDLLARAGHLYEAWDLIRKMP---EKP 494
Query: 219 DEVTMVVVLSACAKKRDLEFG 239
D+VT+ +L AC K++++ G
Sbjct: 495 DKVTLGALLGACRSKKNVDIG 515
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 119/219 (54%), Gaps = 8/219 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ +R+H M+ T + Y ++L + L AR MFD++PQ N+ +W +I
Sbjct: 79 REGQRVHTHMIKTCYLPSVYLRTRLIV--LYNKCDCLGDARGMFDEMPQRNVVSWTAMIS 136
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
AYS ++ +F++++ S PN FT ++ + + F G+ IH + +E
Sbjct: 137 AYSQRGFAFEALNLFVEML-RSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYE 195
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + +SL+ YA G + A+ VF + ++DVV+ ++ISG+ + G E+A++L+R++
Sbjct: 196 SHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQL 255
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
++E + + VT VL+A + L G V SH+ ++G
Sbjct: 256 QIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSG 294
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 11/189 (5%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F +P+ ++ +I Y+ ++ +F QL N T V+ A +
Sbjct: 217 AHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEG-MNSNSVTYASVLTALS 275
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
G+ +H G + +V+ NSLI Y+ CG++ A +F + ++ +SWN
Sbjct: 276 GLAALNHGKQVHSHVLRSGQY-SYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWN 334
Query: 190 SMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKR--DLEFGIWVSSHI 246
+M+ G+ + G + +EL++ M EN VKPD +T + VLS C+ + D+ I+ +
Sbjct: 335 AMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVN 394
Query: 247 EKNGIKMDL 255
K+GI+ D+
Sbjct: 395 GKDGIEPDI 403
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 47/228 (20%)
Query: 21 TVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF 80
+N+G Q H H L + + ++ ++ + D YS K C YAR++F
Sbjct: 279 ALNHGKQVHSHVLRSGQ-----YSYVVLLNSLIDMYS--KCGNVC---------YARRIF 322
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
D +P+ +WN ++ YS + +F + + P+ T V+ +
Sbjct: 323 DSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS----- 377
Query: 141 RVGQAIHGMFED-DLVISNSLIHFY-AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
HG ED L I ++++ + D+ CV ++G+
Sbjct: 378 ------HGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGR---------------A 416
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G E+A + ++M P +L +C D+E GI V +
Sbjct: 417 GRVEEAFDFIKKMP---FVPTAAIWGSLLGSCRVHSDVEIGIIVGQKL 461
>gi|2832657|emb|CAA16732.1| putative protein [Arabidopsis thaliana]
gi|7268645|emb|CAB78854.1| putative protein [Arabidopsis thaliana]
Length = 565
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 4/190 (2%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
L YARK+FD +P+ N TW +I Y ++F +F V + F NE
Sbjct: 111 LGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVKHGIRFTNERMFVC 170
Query: 130 VIKAAARPVQFRVGQAIHG----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
++ +R +F +G+ +HG + +L++ +SL++FYA CG+L A F M+ +KDV
Sbjct: 171 LLNLCSRRAEFELGRQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDV 230
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+SW ++IS G KAI ++ M P+E T+ +L AC++++ L FG V S
Sbjct: 231 ISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSL 290
Query: 246 IEKNGIKMDL 255
+ K IK D+
Sbjct: 291 VVKRMIKTDV 300
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 23/214 (10%)
Query: 40 KRIHA----QMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+++H+ +M+ TD F S ++ C + RK+FD + N TW ++I
Sbjct: 285 RQVHSLVVKRMIKTDVFVGT-SLMDMYAKCG-----EISDCRKVFDGMSNRNTVTWTSII 338
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV 155
A++ ++ +F +++ N T+ Q I E ++
Sbjct: 339 AAHAREGFGEEAISLF-RIMKRRHLIANNLTVELH------------AQIIKNSIEKNVY 385
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
I ++L+ Y CG+ A+ V + +DVVSW +MISG G +A++ +EM E
Sbjct: 386 IGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEG 445
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
V+P+ T L ACA L G + S +KN
Sbjct: 446 VEPNPFTYSSALKACANSESLLIGRSIHSIAKKN 479
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 31/212 (14%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIP 84
+ H + N ++ +HAQ++ + Y S L + C S A + Q+P
Sbjct: 358 KRRHLIANNLTVE-LHAQIIKNSIEKNVYIGSTLVWLYCKCGES-----RDAFNVLQQLP 411
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
++ +W +I SS ++ + FL+ + PN FT +KA A +G+
Sbjct: 412 SRDVVSWTAMISGCSSLGHESEA-LDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGR 470
Query: 145 AIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+IH + + + +SN +LIH ++ +K++VSW +MI G+ G
Sbjct: 471 SIHSIAKKNHALSNVFVGSALIH----------------IMPEKNLVSWKAMIMGYARNG 514
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F +A++L ME E + D+ +LS C
Sbjct: 515 FCREALKLMYRMEAEGFEVDDYIFATILSTCG 546
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 161 IHFYAV-CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK-P 218
IH A+ GDL A VF + +K+ V+W +MI G+++ G ++A L+ + ++
Sbjct: 104 IHAMALKLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVKHGIRFT 163
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+E V +L+ C+++ + E G V ++ K G+
Sbjct: 164 NERMFVCLLNLCSRRAEFELGRQVHGNMVKVGV 196
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 122/257 (47%), Gaps = 39/257 (15%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N K L++IHA+++ + D KL ST + YA +F QI P +TWN +
Sbjct: 39 NFKHLRQIHAKIIRSGLSNDQLLTRKLIH--LYSTHGRIAYAILLFYQIQNPCTFTWNLI 96
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
IRA + + Q+ M++ +V ++FT PFVIKA + +G+ +HG
Sbjct: 97 IRANTINGLSEQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYG 155
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF-------- 201
F D+ + N+LI FY CG A VF + ++VVSW ++ISG + G
Sbjct: 156 FSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFD 215
Query: 202 -----------------------EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
E+A+EL++ M+ EN+ P+E TMV ++ AC + L
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTL 275
Query: 239 GIWVSSHIEKNGIKMDL 255
G + + KN I++ +
Sbjct: 276 GRGIHDYAIKNCIEIGV 292
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 6/179 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L + L+ AR++FD+IP N+ +W +I Y + +P ++ +F ++ + FPNE+
Sbjct: 200 GLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN-IFPNEY 258
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ +IKA +G+ IH E + + +LI Y+ CG + A VF +
Sbjct: 259 TMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETM 318
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+K + +WNSMI+ G ++A+ L+ EME NVKPD +T + VL AC ++++ G
Sbjct: 319 PRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 19/228 (8%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
H Q F D + +S L S L+ AR +FD+IP N+ +W ++I Y ++
Sbjct: 2038 HQQAFVFGFETDLFVSSALID--MYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNE 2095
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPF-------VIKAAARPVQFRVGQAIHGM-----F 150
+ + ++F + + +P V+ A +R + + +HG F
Sbjct: 2096 QADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGF 2155
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ + + N+L+ YA CG ++ VF + +KD +SWNSMI+ + + G +A+E++
Sbjct: 2156 DGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHG 2215
Query: 211 MEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M V+ + VT+ VL ACA L G + + IKMDL +
Sbjct: 2216 MVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV----IKMDLEY 2259
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 5/169 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
++K+FD + + + +WN++I Y+ S ++ +F +V + N TL V+ A A
Sbjct: 2178 SKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACA 2237
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R G+ IH E ++ + S+I Y CG + MA F + +K+V SW +
Sbjct: 2238 HAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTA 2297
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
M++G+ G ++A++++ +M VKP+ +T V VL+AC+ +E G
Sbjct: 2298 MVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEG 2346
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 80 FDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139
+ + + N+++WN++I + + +++ F L P + P IK+ +
Sbjct: 1972 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSL-RKLGLIPTRSSFPCTIKSCSALCD 2030
Query: 140 FRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
G+ H FE DL +S++LI Y+ CG L A +F I ++VVSW SMI+G
Sbjct: 2031 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 2090
Query: 195 FVEGGFFEKAIELYR-----EMEVE---NVKPDEVTMVVVLSACAK 232
+V+ + A+ L++ E EVE NV D V MV VLSAC++
Sbjct: 2091 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSR 2136
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 82/203 (40%), Gaps = 37/203 (18%)
Query: 40 KRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K IH Q++ D ++ S ++ C +E A+K FD++ + N+ +W ++
Sbjct: 2246 KCIHDQVIKMDLEYNVCVGTSIIDMYCKCG-----RVEMAKKTFDRMKEKNVKSWTAMVA 2300
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
Y ++ IF ++V + PN T V+ A + G+ E+
Sbjct: 2301 GYGMHGRAKEALDIFYKMV-RAGVKPNYITFVSVLAACSHA----------GLVEEGWHW 2349
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N++ H Y + + + + M+ F G +A L + M+ +
Sbjct: 2350 FNAMKHKYDI---------------EPGIEHYGCMVDLFGRAGCLNEAYNLIKRMK---M 2391
Query: 217 KPDEVTMVVVLSACAKKRDLEFG 239
KPD V +L AC ++++ G
Sbjct: 2392 KPDFVVWGSLLGACRIHKNVDLG 2414
>gi|147805255|emb|CAN71191.1| hypothetical protein VITISV_019119 [Vitis vinifera]
Length = 880
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 20/225 (8%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
Q K+ HAQ+L F + + L ++ C + L+ ARK+FD++ + N+++WN L
Sbjct: 454 QAKQTHAQILVHGFIPNITLQTDLLLVYSKCGV-----LQDARKVFDKMVERNMHSWNIL 508
Query: 95 IRAYSSSD---EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
I +Y+ + + + F FL++ + P+ FTLP V KA A +G+ +H
Sbjct: 509 IASYAHNCFFYDALGVFDSFLKMGFR----PDHFTLPPVFKACAGIGDSYLGKMLHSWVI 564
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
FE+ +V+ +S++ FY CG L A+ FV + +D V WN MI G + FF A+E
Sbjct: 565 RIGFEEYVVVGSSVLDFYEKCGGLVDAWRCFVNMSWRDSVVWNLMIVGLGKACFFRDALE 624
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+R+M E VK D T+ +LS C + DL G + + KN I
Sbjct: 625 CFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKGKEIHGQVVKNQI 669
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 146 IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
+HG F ++ + L+ Y+ CG L A VF + ++++ SWN +I+ + FF A+
Sbjct: 464 VHG-FIPNITLQTDLLLVYSKCGVLQDARKVFDKMVERNMHSWNILIASYAHNCFFYDAL 522
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
++ +PD T+ V ACA D G + S + + G +
Sbjct: 523 GVFDSFLKMGFRPDHFTLPPVFKACAGIGDSYLGKMLHSWVIRIGFE 569
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 102/200 (51%), Gaps = 6/200 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +K HA ++ T +P S S + ALS S L A F QI QP L +N LIR
Sbjct: 71 KSIKEQHAHLIRTHHHKNPKSMSNVIKSYALSR-SHLNKANFAFIQIGQPTLLIFNYLIR 129
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
S S+ P ++ +++ L+YN + T ++ KA +R GQ H F
Sbjct: 130 GLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFG 189
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
L I NSLI Y G+L A VF + +D+VSWNS+I G+ + F++ ++L+ M
Sbjct: 190 SYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLM 249
Query: 212 EVENVKPDEVTMVVVLSACA 231
NV D VTMV V+ AC+
Sbjct: 250 REANVTADSVTMVKVILACS 269
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 47/253 (18%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
H Q+L F S LF +L F L YA+K+FD++ +L +WN+LI Y
Sbjct: 180 HVQVLKLGF------GSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGY 233
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----D 153
S + + +F L+ + + T+ VI A + + V ++ ED D
Sbjct: 234 SQCNRFKEVLDLF-NLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDID 292
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG--------FFE--- 202
+ + NSLI Y G + +A VF + +K++VSWN+M++G+ G F E
Sbjct: 293 VYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPI 352
Query: 203 --------------------KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
A++L++EM NVKPDE+T+ VLSAC+ L+ G V
Sbjct: 353 RNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTV 412
Query: 243 SSHIEKNGIKMDL 255
++ ++ IK D+
Sbjct: 413 HEYMCRHDIKSDV 425
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 6/178 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+T L A+K+F+++P N+ +W +I + +++ + +F +++ ++ P+E T+
Sbjct: 335 ATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMM-DANVKPDEITV 393
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A + GQ +H + D+ + N+LI Y CG + A VF + K
Sbjct: 394 SSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKK 453
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
KD VSW SMI G GF + EL+ +M + ++P + + +L AC ++ G+
Sbjct: 454 KDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGL 511
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 121/231 (52%), Gaps = 17/231 (7%)
Query: 26 HQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY---ARKMFDQ 82
H LT+ KQL HA ++++ S ++T++ Y ARK+FD+
Sbjct: 30 HYGAAQSLTSTKQL---HAHLITSGLL------SIDIRSVLVATYAHCGYVHNARKLFDE 80
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+ Q +N +I+ Y + + ++ +FL+++ + P+ +T PFVIKA + +
Sbjct: 81 LRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEY 140
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ +HG+ F L + NSL+ Y CG++ A VF + +K VVSWN+MI+G+ +
Sbjct: 141 GRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFK 200
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
GF A+ ++ +M V+ D ++V VL AC ++LE G V +E+
Sbjct: 201 NGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEE 251
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 104/173 (60%), Gaps = 5/173 (2%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E ARK+FD + + ++ +WNT+I Y + + ++F Q+V +S + ++ V
Sbjct: 171 GEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMV-DSGVEIDGASVVSV 229
Query: 131 IKAAARPVQFRVGQAIHGMFEDDL----VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
+ A + VG+ +HG+ E+ + ++SN+L+ YA CG + A VF + ++DVV
Sbjct: 230 LPACGYLKELEVGRRVHGLVEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVV 289
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
SW SMI+G++ G + A+ L++ M++E ++P+ VT+ ++L ACA +L+ G
Sbjct: 290 SWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDG 342
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 94/185 (50%), Gaps = 6/185 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S++ AR +FD + + ++ +W ++I Y + + + +F +++ PN T+ +
Sbjct: 271 GSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLF-KIMQIEGLRPNSVTIALI 329
Query: 131 IKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A + G+ +HG ++ + SLI YA C L +++ VF +K
Sbjct: 330 LLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKT 389
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V WN+++SG V +AI L+++M +E V+ + T +L A DL+ ++S+
Sbjct: 390 VPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSY 449
Query: 246 IEKNG 250
+ ++G
Sbjct: 450 LMRSG 454
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 97/216 (44%), Gaps = 8/216 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L N K + +H ++ + + + L A L ++ +F + + WN
Sbjct: 336 LNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFS--VFTRTSRKKTVPWN 393
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYN----SPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
L+ + ++ +F +++ + N + I A +PV +
Sbjct: 394 ALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLMRS 453
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F ++ ++ SLI Y+ CG L A+ +F + + +D+ W+ +I+G+ G E A+
Sbjct: 454 GFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVS 513
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
L+++M VKP++VT VL +C+ ++ G+++
Sbjct: 514 LFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYL 549
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 128/251 (50%), Gaps = 11/251 (4%)
Query: 10 SIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALST 69
++P PT R P + L ++HA ++ + + A ++
Sbjct: 4 AVPTAALPTPGRAGPAPPRAP-LRADPSYLPQLHAALIKSGELTGSAKSFHSLLEAAAAS 62
Query: 70 FSSLEYARKMFDQIPQPNLYT--WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFT 126
+ L YA +F P+P L T +N L+RA+ + P + +F+++++ + P ++ T
Sbjct: 63 PTLLPYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHT 122
Query: 127 LPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+K+ +R VG+ + G+ D V+S SLIH YA CGD+A A VF
Sbjct: 123 AACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLS-SLIHMYASCGDVAAARLVFDAA 181
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ VV WN++++ +++ G + + +E+++ M V DEVT+V V++AC + D + G
Sbjct: 182 EESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGK 241
Query: 241 WVSSHIEKNGI 251
WV+ H+++ G+
Sbjct: 242 WVAGHVDEEGL 252
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 106/191 (55%), Gaps = 6/191 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
++ + AR +FD + + WN ++ AY + + ++ +F ++ F +E TL
Sbjct: 166 ASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAF-DEVTL 224
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A R ++G+ + G +++ + N +L+ YA CG++ A +F +
Sbjct: 225 VSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQS 284
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DVV+W++MISG+ + +A+ L+ EM++ V+P++VTMV VLSACA LE G WV
Sbjct: 285 RDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWV 344
Query: 243 SSHIEKNGIKM 253
S++ + + +
Sbjct: 345 HSYVRRKRLSL 355
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 6/169 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD + ++ W+ +I Y+ +D+ ++ +F ++ + PN+ T+ V+ A A
Sbjct: 275 ARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQL-ARVEPNDVTMVSVLSACA 333
Query: 136 RPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ +H ++ +L+ FYA CG + A F + K+ +W +
Sbjct: 334 VLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTA 393
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+I G G +A+EL+ M ++P +VT + VL AC+ +E G
Sbjct: 394 LIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEG 442
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 125/258 (48%), Gaps = 40/258 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N KQLK++H +++ +D KL S++ ++YA +FDQ+ P+++TWN
Sbjct: 36 SNFKQLKQVHGKIIRFGLTYDQLLMRKLIQLS--SSYGKMKYATLVFDQLNAPDVFTWNV 93
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IRA++ P + ++F ++ + P++FT PFVI A +G H +
Sbjct: 94 MIRAFTIGGSPKMALLLFKAMLCQG-FAPDKFTYPFVINACMASSALDLGIVAHALAIKM 152
Query: 150 -FEDDLVISNSLIHFY-------------------------------AVCGDLAMAYCVF 177
F DL + N++++ Y CG L A +F
Sbjct: 153 GFWGDLYVQNTMMNLYFKCENVDDGRKVFDKMRVRNVFAWTTVISGLVACGKLDTARELF 212
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDL 236
+ K+VVSW +MI G+V+ +A L+ M +V+NV+P+E T+V ++ AC + L
Sbjct: 213 EQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLVSLVRACTEMGSL 272
Query: 237 EFGIWVSSHIEKNGIKMD 254
+ G V KNG +++
Sbjct: 273 KLGRRVHDFALKNGFELE 290
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 5/179 (2%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L L+ AR++F+Q+P N+ +W +I Y +PI++F +F ++ PNE+
Sbjct: 198 GLVACGKLDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEY 257
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
TL +++A ++G+ +H FE + + +LI Y+ CG L A VF M+
Sbjct: 258 TLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGYLDDARTVFDMM 317
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ + +WN+MI+ G+ ++A+ L+ EME N PD +T V VLSAC DLE
Sbjct: 318 QVRTLATWNTMITSLGVHGYRDEALSLFDEMEKANEVPDAITFVGVLSACVYMNDLELA 376
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 115 VYNSPY-------FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIH 162
+ N+PY F +E L + K + F+ + +HG D ++ LI
Sbjct: 10 IINAPYLGTPRTRFGSEEALVLLQKCS----NFKQLKQVHGKIIRFGLTYDQLLMRKLIQ 65
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
+ G + A VF + DV +WN MI F GG + A+ L++ M + PD+ T
Sbjct: 66 LSSSYGKMKYATLVFDQLNAPDVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFT 125
Query: 223 MVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V++AC L+ GI + K G DL
Sbjct: 126 YPFVINACMASSALDLGIVAHALAIKMGFWGDL 158
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 6/219 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K LK+IHA+++ F + + K+ CA + + YA +F++I P+ + +NT+IR
Sbjct: 2 KDLKQIHARVIQLGFEQNRFVVGKVIVFCAAAEHGDMNYAVSVFEKIGDPDAFIFNTMIR 61
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ +++P ++F + ++ + FT F++K + +G+ +H
Sbjct: 62 GFGKANDPRKAFDYYKRM-QERGLVSDSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLN 120
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + N+L+H Y D+ + +F I ++V+WN +I V G F +A+E++ M
Sbjct: 121 SHVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFSRM 180
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
++PDE T VV+LSAC+ L+FG WV S I G
Sbjct: 181 LKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIG 219
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
TF +E +R++F++IP P L WN +I + S + ++ +F +++ P+E T
Sbjct: 134 GTFKDIEASRQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFSRML-KFGIEPDEATF 192
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ A + G+ +H + ++NSL+ YA CG L A+ +F + K
Sbjct: 193 VVILSACSALGALDFGRWVHSCISNIGHGCITEVNNSLLDMYAKCGALQEAFEIFNGMNK 252
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACA 231
K+ V+WN+MI G G+ +A+ L+ M E + PD++T +VVLSAC+
Sbjct: 253 KNTVTWNTMILGLASHGYANEALALFSNMLEQKLWAPDDITFLVVLSACS 302
>gi|27545050|gb|AAO18456.1| hypothetical protein, 3'-partial [Oryza sativa Japonica Group]
Length = 382
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 99/183 (54%), Gaps = 14/183 (7%)
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMI----FLQLVYNSPYFPNEFTLPFVIKA-AARPVQFR 141
+ + NTLIRA+++S PI S + F L+ PN+FT PF++KA AA P
Sbjct: 87 DAFLANTLIRAHATS--PIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPD 144
Query: 142 VGQAIHGM-----FEDDLVISNSLIHFYAVCGD--LAMAYCVFVMIGKKDVVSWNSMISG 194
VG H F D +SN+LIH Y+ G L A VF + K+ V+W++MI G
Sbjct: 145 VGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGG 204
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+V GG A++L+REM+ V+ DEVT++ VL+A LE WV +E+ GI
Sbjct: 205 YVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKS 264
Query: 255 LTF 257
+T
Sbjct: 265 VTL 267
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 6/194 (3%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
HA L F D Y ++ L + L AR +FD++P+ + TW+ +I Y
Sbjct: 150 HAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGG 209
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVIS 157
+ +F ++ N +E T+ V+ AA + + + E + + +
Sbjct: 210 LSSDAVDLFREMQANGVQ-ADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLC 268
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
N+LI A CGD+ A VF + ++ VVSW S+I G ++A+ ++ EM+V V
Sbjct: 269 NALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVP 328
Query: 218 PDEVTMVVVLSACA 231
PD+V + VL+AC+
Sbjct: 329 PDDVAFIGVLTACS 342
>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 700
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 117/225 (52%), Gaps = 10/225 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H+Q L D + +KL A ++SL +A K+F++ P +Y WN L+R+Y
Sbjct: 22 QLHSQCLKVGLAHDSFVVTKLNVLYA--RYASLCHAHKLFEETPCKTVYLWNALLRSYFL 79
Query: 101 SDEPIQSFMIFLQLVYN--SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDD 153
+ +++ +F Q+ + + P+ +T+ +K+ + + +G+ IHG ++D
Sbjct: 80 EGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDND 139
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + ++LI Y+ CG + A VF K+DVV W S+I+G+ + G E A+ + M V
Sbjct: 140 MFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVV 199
Query: 214 -ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
E V PD VT+V SACA+ D G V +++ G L
Sbjct: 200 LEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCL 244
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 102/202 (50%), Gaps = 10/202 (4%)
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
+L++ C + A K+F + P+ ++ W ++I Y + P + F ++V
Sbjct: 148 ELYSKCG-----QMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQ 202
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAY 174
P+ TL A A+ F +G+++HG F+ L ++NS+++ Y G + A
Sbjct: 203 VSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAA 262
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
+F + KD++SW+SM++ + + G A+ L+ EM + ++ + VT++ L ACA
Sbjct: 263 NLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSS 322
Query: 235 DLEFGIWVSSHIEKNGIKMDLT 256
+LE G + G ++D+T
Sbjct: 323 NLEEGKHIHKLAVNYGFELDIT 344
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 109/214 (50%), Gaps = 11/214 (5%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N ++ K IH ++ F D + S + FS + A +F+++P+ ++ +W
Sbjct: 322 SNLEEGKHIHKLAVNYGFELD-ITVSTALMDMYMKCFSP-KNAIDLFNRMPKKDVVSWAV 379
Query: 94 LIRAYSSSDEPIQSFMIFLQLV-YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
L Y+ +S +F ++ Y + P+ L ++ A++ + +H
Sbjct: 380 LFSGYAEIGMAHKSLGVFCNMLSYGTR--PDAIALVKILAASSELGIVQQALCLHAFVSK 437
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F+++ I SLI YA C + A VF + +KDVV+W+S+I+ + G E+A++L
Sbjct: 438 SGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEALKL 497
Query: 208 YREMEV-ENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ +M +VKP++VT V +LSAC+ +E GI
Sbjct: 498 FYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGI 531
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 93/185 (50%), Gaps = 6/185 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+ A +F ++P ++ +W++++ Y+ + + +F +++ + N T+
Sbjct: 256 GSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMI-DKRIELNRVTVISA 314
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
++A A G+ IH + FE D+ +S +L+ Y C A +F + KKDV
Sbjct: 315 LRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDV 374
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VSW + SG+ E G K++ ++ M +PD + +V +L+A ++ ++ + + +
Sbjct: 375 VSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAF 434
Query: 246 IEKNG 250
+ K+G
Sbjct: 435 VSKSG 439
>gi|224031691|gb|ACN34921.1| unknown [Zea mays]
gi|414879789|tpg|DAA56920.1| TPA: tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 6/160 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A ++F ++P+ N+ +WN +I YS + ++ +FL++ PNE T P V+ + A
Sbjct: 128 ADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGG-VSPNESTFPCVLTSVA 186
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
VG++IH + + D+ I NSL+ FYA CG L + F I +K+VVSWN+
Sbjct: 187 SAGTLGVGRSIHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKINRKNVVSWNA 246
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+I G+ + G E+A++ YR M +KPD VT++ +L C
Sbjct: 247 LICGYAQNGKGEEALDAYRMMRATGLKPDNVTLLGLLFGC 286
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 39/195 (20%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA--RPVQF 140
+P ++ + I A + + +F +++ + PNEFT V+++A R
Sbjct: 1 MPHRDVISATAAIGALTRGGRHRDALALFSRVLADG-VAPNEFTFGTVLRSATALRVRAP 59
Query: 141 RVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYC-------------------- 175
RVG +H ++ + ++L+ YA G + A
Sbjct: 60 RVGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTREPNVVSYTALIAGL 119
Query: 176 -----------VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
+F + +++VVSWN+MI G+ + G E+A+ L+ EM V P+E T
Sbjct: 120 LKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNESTFP 179
Query: 225 VVLSACAKKRDLEFG 239
VL++ A L G
Sbjct: 180 CVLTSVASAGTLGVG 194
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 7/231 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N ++ K+ HA++L F D + AS L CALS + S++YA +F Q+ + + +NT
Sbjct: 42 SNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNT 101
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
++R + D + +I + + P+ FT P ++KA AR G +H
Sbjct: 102 MMRGH-VKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKL 160
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
E+D+ + NSLI Y CG++ + VF + ++ V SW+++I+ G + + L
Sbjct: 161 GLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLL 220
Query: 209 REMEVENV-KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+M E + +E +V VLSAC L+ G V + +N +++ E
Sbjct: 221 GDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVE 271
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 7/205 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++HA +L D + + L + + +F+Q+ + ++ +W+ LI A++S
Sbjct: 152 QVHAHILKLGLENDVFVQNSLIS--MYGKCGEIGVCCAVFEQMNERSVASWSALITAHAS 209
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-----V 155
+ + + E L V+ A +G+++HG ++ +
Sbjct: 210 LGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVI 269
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ SLI Y CG L C+F + KK+ +S++ MISG G+ + + ++ EM +
Sbjct: 270 VETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQG 329
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGI 240
++PD++ V VL+AC+ ++ G+
Sbjct: 330 LEPDDIVYVGVLNACSHAGLVQEGL 354
>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
Length = 591
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 114/207 (55%), Gaps = 11/207 (5%)
Query: 40 KRIHAQMLSTDFFFD-PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+++HA + F + P S L C S FS A + F ++ Q +L TWNTLI Y
Sbjct: 215 EQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSE---ANRYFYEMNQRDLITWNTLIAGY 271
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
S+ P +S +F ++ + + PN FT ++ A A GQ IHG + +
Sbjct: 272 ERSN-PTESLYVF-SMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGN 329
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L +SN+LI Y+ CG++A ++ VF + ++D+VSW +M+ G+ G+ E+A+EL+ +M
Sbjct: 330 LALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVR 389
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGI 240
++PD V + +LSAC+ ++ G+
Sbjct: 390 SGIRPDRVVFMAILSACSHAGLVDEGL 416
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 7/191 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
S++ A +F I N +W TLI Y+ D+ +F Q++ N F+ +
Sbjct: 144 SMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVEL-NPFSFSIAV 202
Query: 132 KAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
+A G+ +H FE +L + NS++ Y C + A F + ++D++
Sbjct: 203 RACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLI 262
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+WN++I+G+ E ++ ++ ME E P+ T +++ACA L G + I
Sbjct: 263 TWNTLIAGYERSNPTE-SLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRI 321
Query: 247 EKNGIKMDLTF 257
+ G+ +L
Sbjct: 322 IRRGLDGNLAL 332
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+I Y+S + ++M+F +++ N PN FT+ V+KA G+ +HG+
Sbjct: 64 MIAGYTSCNNHTHAWMVFCEMM-NEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKH 122
Query: 150 -FEDDLVISNSLIHFYAVCG-DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ + + N+L+ YA C + A VF I K+ VSW ++I+G+ + +
Sbjct: 123 GLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRV 182
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+R+M +E V+ + + + + AC FG + + + K+G + +L
Sbjct: 183 FRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNL 230
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 34/221 (15%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMI 110
+P + S + C + F + AR++FDQ+P N+ WN +I AY + DE I FM
Sbjct: 117 NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFME 176
Query: 111 F------------------------LQLVYNSPYF--PNEFTLPFVIKAAARPVQFRVGQ 144
QL+ PY P++ T + + A +VG+
Sbjct: 177 MPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQVGK 236
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+H + + DL +SN+LI YA CG ++ A +F I DVVSWNS+I+ + G
Sbjct: 237 QLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNG 296
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+A++L+ +MEVE V PDEVT V +LSAC+ ++ G+
Sbjct: 297 NGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGL 337
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 30/208 (14%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV-------------------Y 116
AR++FD +P +L +WN+++ Y+ + E F ++
Sbjct: 46 ARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDL 105
Query: 117 NSPY-----FPNEFTLPFVIKAAARPVQFRVGQAIHGMFED----DLVISNSLIHFYAVC 167
NS + PN T+ +V ++ +A +F+ ++V N++I Y
Sbjct: 106 NSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEA-RRLFDQMPIRNVVAWNAMIAAYVQN 164
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
+ A +F+ + +K+ +SW ++I+G+V G ++A +L +M N KPD+ T L
Sbjct: 165 CHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGL 223
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMDL 255
S+CA L+ G + + K+G DL
Sbjct: 224 SSCAHLAALQVGKQLHQLVMKSGYATDL 251
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-HGMFED 152
+I Y+ + E ++ +F L PY N ++ A+ QF + + M
Sbjct: 1 MITCYTRNGELAKARNLFNLL----PYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAK 56
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
DLV NS++ Y G++ + F + ++DVVSWN M+ GFVE G + E + ++
Sbjct: 57 DLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIP 116
Query: 213 VENVKPDEVTMVVVLSACAK 232
P+ V+ V +L A+
Sbjct: 117 ----NPNTVSWVTMLCGFAR 132
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 8/186 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ AR +FD +P+ ++ +W+ LI Y+ S + +F ++ + P NE T+ V+
Sbjct: 92 LDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKMRTSGPK-ANEVTMVSVLC 150
Query: 133 AAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKKDV 185
A A G+ +H FE +LV+ SLI YA CG + A+ VF V + K DV
Sbjct: 151 ACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDV 210
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+ WN+MI G G +++++LY EM++ +KPDE+T + +LSACA ++ +V
Sbjct: 211 LIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPDEITFLCLLSACAHGGLVKQASYVFEG 270
Query: 246 IEKNGI 251
+ KNG+
Sbjct: 271 LGKNGM 276
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 36/174 (20%)
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
+P+ T PF+ KA +R ++ +G +IHG FE D ++NSLIH Y CGD+ A
Sbjct: 7 YPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGDIVYARK 66
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFE-------------------------------KA 204
VF K++VSWNSM+ G+ + G+ + A
Sbjct: 67 VFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDA 126
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ ++ +M K +EVTMV VL ACA L+ G + ++ NG +++L
Sbjct: 127 MAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLR 180
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 120/228 (52%), Gaps = 14/228 (6%)
Query: 37 KQLKRIHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
++ + IH +++ F F + L+ C +E A KMF+++PQ +L +WNT
Sbjct: 159 RRGREIHGMVITNGFQSNLFAMTAVVNLYAKC-----RQIEDAYKMFERMPQRDLVSWNT 213
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
++ Y+ + ++ + LQ+ + P+ TL V+ A A R+G++IHG
Sbjct: 214 VVAGYAQNGFARRAVQVVLQM-QEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRA 272
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
FE + ++ +++ Y CG + A VF + ++VVSWN+MI G+ + G E+A +
Sbjct: 273 GFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATF 332
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+M E V+P V+M+ L ACA DLE G +V +++ I D++
Sbjct: 333 LKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVS 380
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+ AR +F + N+ +WNT+I Y+ + E ++F FL+++ + P ++
Sbjct: 292 GSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKML-DEGVEPTNVSMMGA 350
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A G+ +H + ++ D+ + NSLI Y+ C + +A VF + K V
Sbjct: 351 LHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTV 410
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
V+WN+MI G+ + G +A+ L+ EM+ ++KPD T+V V++A A
Sbjct: 411 VTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALA 456
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 115/222 (51%), Gaps = 13/222 (5%)
Query: 28 RHP-----HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQ 82
RHP T+ K+L +I ++ F+ + +KL + F+S+ A ++F+
Sbjct: 44 RHPSAILLELCTSLKELHQILPLIIKNGFYNEHLFQTKLIS--LFCKFNSITEAARVFEP 101
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+ ++T+++ Y+ + ++ + F + + P + ++++ + + R
Sbjct: 102 VEHKLDVLYHTMLKGYAK-NSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRR 160
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ IHGM F+ +L ++++ YA C + AY +F + ++D+VSWN++++G+ +
Sbjct: 161 GREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQ 220
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
GF +A+++ +M+ KPD +T+V VL A A + L G
Sbjct: 221 NGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIG 262
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 115/227 (50%), Gaps = 11/227 (4%)
Query: 31 HFLTNQKQLKR---IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN 87
H N L+R +H + FD + L + S ++ A +F +
Sbjct: 352 HACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLIS--MYSKCKRVDIAASVFGNLKHKT 409
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA-----RPVQFRV 142
+ TWN +I Y+ + ++ +F ++ + P+ FTL VI A A R ++
Sbjct: 410 VVTWNAMILGYAQNGCVNEALNLFCEM-QSHDIKPDSFTLVSVITALADLSVTRQAKWIH 468
Query: 143 GQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
G AI + + ++ + +LI +A CG + A +F ++ ++ V++WN+MI G+ G
Sbjct: 469 GLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGR 528
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+A++L+ EM+ +VKP+E+T + V++AC+ +E G++ +++N
Sbjct: 529 EALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKEN 575
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 31/207 (14%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+ +Q K IH + T + + + L A +++ ARK+FD + + ++ TWN
Sbjct: 458 LSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHA--KCGAIQTARKLFDLMQERHVITWN 515
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
+I Y ++ ++ +F ++ N PNE T VI A + G+ E+
Sbjct: 516 AMIDGYGTNGHGREALDLFNEM-QNGSVKPNEITFLSVIAACSHS----------GLVEE 564
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ S+ Y + + + + +M+ G + A + ++M
Sbjct: 565 GMYYFESMKENYGL---------------EPTMDHYGAMVDLLGRAGRLDDAWKFIQDMP 609
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFG 239
VKP + +L AC +++E G
Sbjct: 610 ---VKPGITVLGAMLGACRIHKNVELG 633
>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Brachypodium distachyon]
Length = 564
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 112/232 (48%), Gaps = 26/232 (11%)
Query: 4 LSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFT 63
LS SI H + + G Q H L K +A + + D Y +
Sbjct: 174 LSPFTCSIALHACASIANLCVGQQLHVLCLR-----KAFNANLTVANSLIDMYCS----- 223
Query: 64 PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
CA +L AR++FD+IP+ NL TWNT+I YS + ++ LQL+ PN
Sbjct: 224 -CA-----NLLDARRLFDEIPERNLVTWNTMIAWYSQCNH-----LMALQLLREMNLQPN 272
Query: 124 EFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFV 178
FTL + A A R GQ +HG + DL + N+L+ Y+ CG +A A +F
Sbjct: 273 CFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFN 332
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
M+ KD +SW SMI+G+ G+ ++I+L+ M V PD V + ++ AC
Sbjct: 333 MMDYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFLGLICAC 384
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 11/190 (5%)
Query: 72 SLEYARKMFDQIPQPN-LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E +RK+FD + +W +++ YS + +F ++ + + FT
Sbjct: 124 GVEESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIEL-SPFTCSIA 182
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A VGQ +H + F +L ++NSLI Y C +L A +F I ++++
Sbjct: 183 LHACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNL 242
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V+WN+MI+ + + A++L REM N++P+ T+ + SACA L FG V
Sbjct: 243 VTWNTMIAWYSQCNHL-MALQLLREM---NLQPNCFTLTSITSACAGLASLRFGQQVHGA 298
Query: 246 IEKNGIKMDL 255
+ DL
Sbjct: 299 ALRRNYGKDL 308
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 24/191 (12%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+L +L +AR +FD++P ++ W ++ Y+S+ + +F +++ + PNEF
Sbjct: 12 SLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLA-AGVGPNEF 70
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDL-------------VISNSLIHFYAVCGD--- 169
TL V+ A R G A G L + N+LI YA C +
Sbjct: 71 TLSSVLTAC------RGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVG 124
Query: 170 LAMAYCVFVMIGK-KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
+ + +F +G + SW SM++G+ G + ++L++ M + ++ T + L
Sbjct: 125 VEESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALH 184
Query: 229 ACAKKRDLEFG 239
ACA +L G
Sbjct: 185 ACASIANLCVG 195
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+ +LI G L A VF + +DVV+W +M+SG+ G A++L+R M V
Sbjct: 6 ATTLIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGV 65
Query: 217 KPDEVTMVVVLSAC 230
P+E T+ VL+AC
Sbjct: 66 GPNEFTLSSVLTAC 79
>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
Length = 1073
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 116/225 (51%), Gaps = 15/225 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++IH+++ + D ++ L + C SLE ARK+F+++ + N+ +W +I
Sbjct: 221 EQIHSRIAKAGYESDVNVSTALINMYCKCG-----SLELARKVFNEMRERNVVSWTAMIS 275
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + ++ +F +L+ S PN+ + ++ A P G +H E
Sbjct: 276 GYVQHGDSREALALFRKLI-RSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLE 334
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++++ N+LI Y+ CG LA A VF + + +WN+MI+G+ EG E+A L+R M
Sbjct: 335 QEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGYGEG-LMEEAFRLFRAM 393
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
E + +PD+ T +L+ CA + DL+ G + S I G + DLT
Sbjct: 394 EQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLT 438
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 10/222 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +H+Q+ ST + D A+ L + A S E ARK+F+Q+P+ N+ +WN I
Sbjct: 422 KELHSQIASTGWQTDLTVATALISMYA--KCGSPEEARKVFNQMPERNVISWNAFISCCC 479
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG------MFEDD 153
D ++F F Q+ + P+ T ++ + P G+ IHG M ++
Sbjct: 480 RHDLGKEAFQAFKQMRRDDVN-PDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNN 538
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
V +N+LI Y CG+LA A VF I ++D+ SWN+MI+ V+ G A +L+R+
Sbjct: 539 HV-ANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRS 597
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E K D+ T + VL A A DL+ G + +EK G D+
Sbjct: 598 EGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDI 639
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 117/221 (52%), Gaps = 8/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H M S F D Y + L + S S+E A +F + ++ +WN +I Y+
Sbjct: 120 KKVHDHMRSAQFKPDIYLNNMLIS--MYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYA 177
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
++ +F Q+ PN+ T ++ A P+ G+ IH +E D+
Sbjct: 178 LHGRDQEAADLFYQM-QREGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDV 236
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+S +LI+ Y CG L +A VF + +++VVSW +MISG+V+ G +A+ L+R++
Sbjct: 237 NVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRS 296
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++P++V+ +L AC DL G+ + ++I++ G++ ++
Sbjct: 297 GIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEV 337
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 102/190 (53%), Gaps = 8/190 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPF 129
+L AR++F +I + +L +WN +I A +F +F + Y S +++T
Sbjct: 552 GNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRK--YRSEGGKGDKYTFIN 609
Query: 130 VIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V++A A G+ IHG+ E D+ + +LI Y+ CG L A VF + +KD
Sbjct: 610 VLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQEKD 669
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VV WN+M++ + + A++L+++M++E V PD T L+ACA+ +E G + +
Sbjct: 670 VVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHA 729
Query: 245 HIEKNGIKMD 254
+++ G++ D
Sbjct: 730 QLKEAGMETD 739
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 11/191 (5%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS--DEPIQSFMIFLQLVYNSPYFPNEF 125
S SL AR++FD + N TWN +I Y +E + F Q + P++F
Sbjct: 348 SRCGSLANARQVFDNLRSLNRTTWNAMIAGYGEGLMEEAFRLFRAMEQ----KGFQPDKF 403
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T ++ A G+ +H ++ DL ++ +LI YA CG A VF +
Sbjct: 404 TYASLLAICADRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQM 463
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+++V+SWN+ IS ++A + +++M ++V PD +T + +L++C DLE G
Sbjct: 464 PERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGR 523
Query: 241 WVSSHIEKNGI 251
++ I + G+
Sbjct: 524 YIHGKINQWGM 534
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 11/178 (6%)
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
K+++ C SL A +F + + ++ WN ++ AY+ SD + +F Q+
Sbjct: 647 KMYSKCG-----SLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGV 701
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAY 174
P+ T + A AR G+ IH E D +SNSLI Y+ CG L A
Sbjct: 702 N-PDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAK 760
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
VF + +D+ SWN++I+G+ + G A+E Y M ++ P++ T +LS+ A+
Sbjct: 761 QVFEKMLSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQ 818
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 143 GQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ +H F+ D+ ++N LI Y+ CG + A VF + KDVVSWN+MISG+
Sbjct: 119 GKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYAL 178
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
G ++A +L+ +M+ E +KP++ T + +LSAC LEFG + S I K G + D+
Sbjct: 179 HGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVN 237
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 6/179 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ +E ++FD +P+ N+++WN LI+ Y+ + + F ++V PN+ T+
Sbjct: 132 ANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATM 191
Query: 128 PFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
V+ A A+ F G+ +H G + D+ + N+LI Y CG + +A VF I
Sbjct: 192 TLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIK 251
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++D++SWN+MI+G G +A+ L+ EM+ + PD+VT V VL AC +E G+
Sbjct: 252 RRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGL 310
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 36/176 (20%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR+ FD P+ ++ WNT+I Y +++ +F Q+
Sbjct: 78 ARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQM--------------------- 116
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
P + D++ N+++ YA GD+ VF + +++V SWN +I G+
Sbjct: 117 -PCR-------------DVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGY 162
Query: 196 VEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ G + + ++ M E +V P++ TM +VLSACAK +FG WV + E G
Sbjct: 163 AQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLG 218
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
M E ++V+ S+I+ Y + DL A F + ++D+V WN+MISG++E G +A L+
Sbjct: 54 MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 113
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLE 237
+M +V ++ VL A D+E
Sbjct: 114 DQMPCRDV----MSWNTVLEGYANIGDME 138
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 29/169 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++E A ++F I + +L +WNT+I ++ ++ +F ++ NS P++ T V
Sbjct: 238 GAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEM-KNSGISPDKVTFVGV 296
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A G+ ED L NS+ +++ ++ CV ++ +
Sbjct: 297 LCACKH----------MGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSR-------- 338
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
GF +A+E +M VK D V +L A + ++ G
Sbjct: 339 -------AGFLTQAVEFINKMP---VKADAVIWATLLGASKVYKKVDIG 377
>gi|224148148|ref|XP_002336601.1| predicted protein [Populus trichocarpa]
gi|222836288|gb|EEE74709.1| predicted protein [Populus trichocarpa]
Length = 223
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 107/201 (53%), Gaps = 12/201 (5%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T LK IHA ++ FD ++AS L + L+YA ++F QI PNL+ +N+
Sbjct: 26 TTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNL--LDYAAQVFYQIQNPNLFIYNS 83
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
IR +S S +P +SF ++Q N P+ T PF++KA + +G HG
Sbjct: 84 FIRGFSGSKDPDKSFHFYVQSKRNG-LVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRH 142
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F+ D+ + NSL+ Y+ GD+ A VF I DVVSW SM++G+++ G A +L+
Sbjct: 143 GFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLF 202
Query: 209 REMEVENVKPDEVTMVVVLSA 229
+M +N+ VT V++S
Sbjct: 203 DKMPEKNL----VTWSVMISG 219
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L A VF I ++ +NS I GF +K+ Y + + + PD +T ++ A
Sbjct: 63 LDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKA 122
Query: 230 CAKKRDLEFGIWVSSHIEKNGIKMDL 255
C +K L+ GI I ++G D+
Sbjct: 123 CTQKGSLDMGIQAHGQIIRHGFDSDV 148
>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570 [Vitis vinifera]
Length = 607
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 114/207 (55%), Gaps = 11/207 (5%)
Query: 40 KRIHAQMLSTDFFFD-PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+++HA + F + P S L C S FS A + F ++ Q +L TWNTLI Y
Sbjct: 231 EQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSE---ANRYFYEMNQRDLITWNTLIAGY 287
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
S+ P +S +F ++ + + PN FT ++ A A GQ IHG + +
Sbjct: 288 ERSN-PTESLYVF-SMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGN 345
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L +SN+LI Y+ CG++A ++ VF + ++D+VSW +M+ G+ G+ E+A+EL+ +M
Sbjct: 346 LALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVR 405
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGI 240
++PD V + +LSAC+ ++ G+
Sbjct: 406 SGIRPDRVVFMAILSACSHAGLVDEGL 432
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 103/211 (48%), Gaps = 9/211 (4%)
Query: 53 FDPYSASKLFTPCALSTFSS--LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMI 110
F P S L T S F + AR +FD++P+ ++ W +I Y+S + ++M+
Sbjct: 37 FIPKGPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMV 96
Query: 111 FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA 165
F +++ N PN FT+ V+KA G+ +HG+ + + + N+L+ YA
Sbjct: 97 FCEMM-NEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYA 155
Query: 166 VCG-DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
C + A VF I K+ VSW ++I+G+ + ++R+M +E V+ + +
Sbjct: 156 TCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFS 215
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ + AC FG + + + K+G + +L
Sbjct: 216 IAVRACTSIGSHTFGEQLHAAVTKHGFESNL 246
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 6/179 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ +E ++FD +P+ N+++WN LI+ Y+ + + F ++V PN+ T+
Sbjct: 79 ANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATM 138
Query: 128 PFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
V+ A A+ F G+ +H G + D+ + N+LI Y CG + +A VF I
Sbjct: 139 TLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIK 198
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++D++SWN+MI+G G +A+ L+ EM+ + PD+VT V VL AC +E G+
Sbjct: 199 RRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGL 257
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 36/176 (20%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR+ FD P+ ++ WNT+I Y +++ +F Q+
Sbjct: 25 ARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQM--------------------- 63
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
P + D++ N+++ YA GD+ VF + +++V SWN +I G+
Sbjct: 64 -PCR-------------DVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGY 109
Query: 196 VEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ G + + ++ M E V P++ TM +VLSACAK +FG WV + E G
Sbjct: 110 AQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLG 165
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
M E ++V+ S+I+ Y + DL A F + ++D+V WN+MISG++E G +A L+
Sbjct: 1 MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLE 237
+M +V ++ VL A D+E
Sbjct: 61 DQMPCRDV----MSWNTVLEGYANIGDME 85
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 29/169 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++E A ++F I + +L +WNT+I ++ ++ +F ++ NS P++ T V
Sbjct: 185 GAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEM-KNSGISPDKVTFVGV 243
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A G+ ED L NS+ +++ ++ CV ++ +
Sbjct: 244 LCACKH----------MGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSR-------- 285
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
GF +A+E +M VK D V +L A + ++ G
Sbjct: 286 -------AGFLTQAVEFINKMP---VKADAVIWATLLGASKVYKKVDIG 324
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 117/227 (51%), Gaps = 14/227 (6%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
N + ++IHA + S+ F D + S ++ C S+ AR +FDQ+ + ++ +W
Sbjct: 66 NLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKC-----RSVLDARNVFDQMRRKDMVSW 120
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+LI Y+ +D P+++ + ++ + PN FT ++KAA G+ IH +
Sbjct: 121 TSLIAGYAQNDMPVEAIGLLPGML-KGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAV 179
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+ +D+ + ++L+ YA CG + MA VF + K+ VSWN++ISGF G E A+
Sbjct: 180 KCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALM 239
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
+ EM + T V S+ A+ LE G WV +H+ K+ K+
Sbjct: 240 TFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKL 286
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IHA + + D Y S L A ++ A +FD++ N +WN LI ++
Sbjct: 172 RQIHALAVKCGWHEDVYVGSALLDMYARC--GKMDMATAVFDKLDSKNGVSWNALISGFA 229
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDL 154
+ + M F +++ N + FT V + AR G+ +H +
Sbjct: 230 RKGDGESALMTFAEMLRNG-FEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTA 288
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+L+ YA G + A VF + KD+V+WNSM++ F + G ++A+ + EM
Sbjct: 289 FVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKS 348
Query: 215 NVKPDEVTMVVVLSACA 231
V +++T + +L+AC+
Sbjct: 349 GVYLNQITFLCILTACS 365
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 135 ARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
AR + +G + F D + NSLIH Y C + A VF + +KD+VSW S+I+G
Sbjct: 70 ARKIHAHLGSS---RFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAG 126
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ + +AI L M KP+ T +L A D G + + K G D
Sbjct: 127 YAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHED 186
Query: 255 L 255
+
Sbjct: 187 V 187
>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 701
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 9/226 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+ ++H+Q L D + +KL A ++SL +A K+F++ P +Y WN L+R+Y
Sbjct: 20 ITQLHSQCLKVGLALDSFVVTKLNVLYA--RYASLCHAHKLFEETPCKTVYLWNALLRSY 77
Query: 99 SSSDEPIQSFMIFLQLVYN--SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----ED 152
+ +++ +F Q+ + + P+ +T+ +K+ + + +G+ IHG +
Sbjct: 78 FLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKIDS 137
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + ++LI Y+ CG + A VF K DVV W S+I+G+ + G E A+ + M
Sbjct: 138 DMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMV 197
Query: 213 V-ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
V E V PD VT+V SACA+ D G V +++ G L
Sbjct: 198 VLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCL 243
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 113/225 (50%), Gaps = 14/225 (6%)
Query: 40 KRIHA---QMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K IH + + +D F + +L++ C + A K+F + P+P++ W ++I
Sbjct: 125 KMIHGFLKKKIDSDMFVGS-ALIELYSKCG-----QMNDAVKVFTEYPKPDVVLWTSIIT 178
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + P + F ++V P+ TL A A+ F +G+++HG F+
Sbjct: 179 GYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFD 238
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
L ++NS+++ Y G + +A +F + KD++SW+SM++ + + G A+ L+ EM
Sbjct: 239 TKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEM 298
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ ++ + VT++ L ACA +LE G + G ++D+T
Sbjct: 299 IDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDIT 343
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 19/238 (7%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N ++ K+IH ++ F D + S L FS E A ++F+++P+ ++ +W
Sbjct: 321 SNLEEGKQIHKLAVNYGFELD-ITVSTALMDMYLKCFSP-ENAIELFNRMPKKDVVSWAV 378
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
L Y+ +S +F ++ N P+ L ++ A++ + +H
Sbjct: 379 LFSGYAEIGMAHKSLGVFCNMLSNGTR-PDAIALVKILAASSELGIVQQALCLHAFVTKS 437
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F+++ I SLI YA C + A VF + DVV+W+S+I+ + G E+A++L
Sbjct: 438 GFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLS 497
Query: 209 REMEV-ENVKPDEVTMVVVLSACAKKRDLEFGI----------WVSSHIEKNGIKMDL 255
+M +VKP++VT V +LSAC+ +E GI + +IE GI +DL
Sbjct: 498 HQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDL 555
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 93/185 (50%), Gaps = 6/185 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+ A +F ++P ++ +W++++ Y+ + + +F +++ + N T+
Sbjct: 255 GSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMI-DKRIELNRVTVISA 313
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
++A A G+ IH + FE D+ +S +L+ Y C A +F + KKDV
Sbjct: 314 LRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDV 373
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VSW + SG+ E G K++ ++ M +PD + +V +L+A ++ ++ + + +
Sbjct: 374 VSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAF 433
Query: 246 IEKNG 250
+ K+G
Sbjct: 434 VTKSG 438
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 114/223 (51%), Gaps = 16/223 (7%)
Query: 40 KRIHAQMLSTDF----FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+ IHA + + F F D S L+ C ++ AR++FD +P ++ +W +LI
Sbjct: 84 RAIHAHLAGSQFAGSVFLDN-SLIHLYCKCG-----AVADARRVFDGMPARDMCSWTSLI 137
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
Y+ +D P ++ + ++ + PN FT ++KAA +G+ IH + +
Sbjct: 138 AGYAQNDMPDEALGLLPGML-RGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDW 196
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
DD+ + ++L+ YA CG + MA VF + K+ VSWN++I+GF G E + ++ E
Sbjct: 197 HDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAE 256
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
M+ + T V SA A LE G WV +H+ K+G ++
Sbjct: 257 MQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERL 299
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IHA + D+ D Y S L A ++ A +FDQ+ N +WN LI ++
Sbjct: 185 EQIHALTVKYDWHDDVYVGSALLDMYARC--GRMDMAIAVFDQLESKNGVSWNALIAGFA 242
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDLVIS- 157
+ + ++F ++ N + FT V A A G+ +H M + +S
Sbjct: 243 RKGDGETTLLMFAEMQRNG-FEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSA 301
Query: 158 ---NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
N+++ YA G + A VF + KKDVV+WNSM++ F + G +A+ + EM
Sbjct: 302 FVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKC 361
Query: 215 NVKPDEVTMVVVLSACA 231
V +++T + +L+AC+
Sbjct: 362 GVHLNQITFLSILTACS 378
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 99/183 (54%), Gaps = 14/183 (7%)
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMI----FLQLVYNSPYFPNEFTLPFVIKA-AARPVQFR 141
+ + NTLIRA+++S PI S + F L+ PN+FT PF++KA AA P
Sbjct: 87 DAFLANTLIRAHATS--PIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPD 144
Query: 142 VGQAIHGM-----FEDDLVISNSLIHFYAVCGD--LAMAYCVFVMIGKKDVVSWNSMISG 194
VG H F D +SN+LIH Y+ G L A VF + K+ V+W++MI G
Sbjct: 145 VGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGG 204
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+V GG A++L+REM+ V+ DEVT++ VL+A LE WV +E+ GI
Sbjct: 205 YVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKS 264
Query: 255 LTF 257
+T
Sbjct: 265 VTL 267
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 6/194 (3%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
HA L F D Y ++ L + L AR +FD++P+ + TW+ +I Y
Sbjct: 150 HAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGG 209
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVIS 157
+ +F ++ N +E T+ V+ AA + + + E + + +
Sbjct: 210 LSSDAVDLFREMQANGVQ-ADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLC 268
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
N+LI A CGD+ A VF + ++ VVSW S+I G ++A+ ++ EM+V V
Sbjct: 269 NALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVP 328
Query: 218 PDEVTMVVVLSACA 231
PD+V + VL+AC+
Sbjct: 329 PDDVAFIGVLTACS 342
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 114/223 (51%), Gaps = 16/223 (7%)
Query: 40 KRIHAQMLSTDF----FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+ IHA + + F F D S L+ C ++ AR++FD +P ++ +W +LI
Sbjct: 84 RAIHAHLAGSQFAGSVFLDN-SLIHLYCKCG-----AVADARRVFDGMPARDMCSWTSLI 137
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
Y+ +D P ++ + ++ + PN FT ++KAA +G+ IH + +
Sbjct: 138 AGYAQNDMPDEALGLLPGML-RGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDW 196
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
DD+ + ++L+ YA CG + MA VF + K+ VSWN++I+GF G E + ++ E
Sbjct: 197 HDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAE 256
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
M+ + T V SA A LE G WV +H+ K+G ++
Sbjct: 257 MQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERL 299
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IHA + D+ D Y S L A ++ A +FDQ+ N +WN LI ++
Sbjct: 185 EQIHALTVKYDWHDDVYVGSALLDMYARC--GRMDMAIAVFDQLESKNGVSWNALIAGFA 242
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDLVIS- 157
+ + ++F ++ N + FT V A A G+ +H M + +S
Sbjct: 243 RKGDGETTLLMFAEMQRNG-FEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSA 301
Query: 158 ---NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
N+++ YA G + A VF + KKDVV+WNSM++ F + G +A+ + EM
Sbjct: 302 FVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKC 361
Query: 215 NVKPDEVTMVVVLSACA 231
V +++T + +L+AC+
Sbjct: 362 GVHLNQITFLSILTACS 378
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 124/256 (48%), Gaps = 20/256 (7%)
Query: 1 METLSTPVISI----PRHPNPTTLTVNNGHQ-RHPHFL-------TNQKQLKRIHAQMLS 48
M TL+ P I P P TL H PH++ +N ++ IHA +++
Sbjct: 1 MATLTLPNIFFSSLSPSIHKPPTLNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLIT 60
Query: 49 TDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSF 108
+ DP S++ L + ++L+ A ++ +P WNTL+ P +
Sbjct: 61 ANLIHDPEITSQVLA--FLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVL 118
Query: 109 MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHF 163
+ +V + T F+I A + ++G +HG F + ++N+L+
Sbjct: 119 ECYYHMVTQGVLL-DISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGL 177
Query: 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
Y+ CG L +F + +DV+SWN+MIS +V G + +A++L+ EM V V PDE+TM
Sbjct: 178 YSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITM 237
Query: 224 VVVLSACAKKRDLEFG 239
V ++S CAK +DLE G
Sbjct: 238 VSLVSTCAKLKDLEMG 253
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 114/221 (51%), Gaps = 39/221 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+ ++ AR++FD++ + +L +W T++ Y +S +F Q+ + + P+E L V
Sbjct: 316 NKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFEN-VIPDEVALVTV 374
Query: 131 IKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMA----------- 173
+ A F +G+++H GM D + N+L+ YA CG L A
Sbjct: 375 LSACVHLEDFDLGRSVHAFIVTYGMLVDGF-LGNALLDLYAKCGKLDEALRTFEQLPCKS 433
Query: 174 ----------YC----------VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+C F I +KD+VSWN+M++ +V+ F ++ E++ +M+
Sbjct: 434 AASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQS 493
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
NVKPD+ T++ +LS+CAK L GIWV+ +IEKN I +D
Sbjct: 494 SNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGID 534
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 96/171 (56%), Gaps = 16/171 (9%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++ AR F++IP+ ++ +WNT++ AY D +SF IF ++ +S P++ TL +
Sbjct: 448 GGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKM-QSSNVKPDKTTLISL 506
Query: 131 IKAAARPVQFRVGQAIHGMFED----------DLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+ + A+ VG HG++ + D ++ +LI Y CG + MAY +F I
Sbjct: 507 LSSCAK-----VGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQI 561
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+K+V W +M++ + G +AI+LY EME VKPD VT + +L+AC+
Sbjct: 562 IEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACS 612
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 118/251 (47%), Gaps = 41/251 (16%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++L F + + L S L+ ++F+++ ++ +WNT+I Y
Sbjct: 155 VHGRILKCGFGRNKSLNNNLMG--LYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLK 212
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----I 156
++ +F +++ S P+E T+ ++ A+ +G+ +H D+ + +
Sbjct: 213 GMYREALDLFDEMLV-SGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSL 271
Query: 157 SNSLIHFYAVCGDLAMAY-----C----------------------------VFVMIGKK 183
N L+ Y+ CG + A+ C +F + ++
Sbjct: 272 LNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNER 331
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+VSW +M+SG+V+GG++ +++EL+++M ENV PDEV +V VLSAC D + G V
Sbjct: 332 SLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVH 391
Query: 244 SHIEKNGIKMD 254
+ I G+ +D
Sbjct: 392 AFIVTYGMLVD 402
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 12/208 (5%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI----PQPNLYTWNTLIR 96
++HA ++T D + A+ L F ++ AR+MFD+ + N +WNT+I
Sbjct: 121 QVHALAVATRLVHDVFVANALVA--VYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMIS 178
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
AY +D+ + +F ++V++ PNEF V+ A G+ +HG +E
Sbjct: 179 AYVKNDQSGDAIGVFREMVWSGER-PNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYE 237
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ +N+L+ Y+ GD+ MA VF + DVVSWN+ ISG V G +A+EL +M
Sbjct: 238 KDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQM 297
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ + P+ T+ VL ACA G
Sbjct: 298 KSSGLVPNVFTLSSVLKACAGAGAFNLG 325
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 18/204 (8%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C L + AR +FD+IP P +W++L+ AYS++ P + + F + +
Sbjct: 46 LYSRCRLPS-----AARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAF-RAMRGRGV 99
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
NEF LP V+K A R G +H + D+ ++N+L+ Y G + A
Sbjct: 100 PCNEFALPVVLKCAP---DVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARR 156
Query: 176 VF----VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+F + G+++ VSWN+MIS +V+ AI ++REM +P+E V++AC
Sbjct: 157 MFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACT 216
Query: 232 KKRDLEFGIWVSSHIEKNGIKMDL 255
RDLE G V + + G + D+
Sbjct: 217 GSRDLEAGRQVHGAVVRTGYEKDV 240
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 6/163 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+YA K+F + ++ + T++ A S D + +F+Q++ P+ F L ++
Sbjct: 460 LDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKG-LEPDSFVLSSLLN 518
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + G+ +H F D+ N+L++ YA CG + A F + ++ +VS
Sbjct: 519 ACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVS 578
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
W++MI G + G ++A++L+ M E V P+ +T+ VLSAC
Sbjct: 579 WSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSAC 621
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 10/222 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H ++ T + D ++A+ L S +E A +F+++P ++ +WN I
Sbjct: 225 RQVHGAVVRTGYEKDVFTANALVD--MYSKLGDIEMAATVFEKMPAADVVSWNAFISGCV 282
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDL 154
+ ++ + LQ+ +S PN FTL V+KA A F +G+ IHG + D
Sbjct: 283 THGHDHRALELLLQM-KSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDE 341
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ L+ YA G L A VF + ++D++ WN++ISG G + + L+ M E
Sbjct: 342 FVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKE 401
Query: 215 NVKPD--EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ D T+ VL + A + V + EK G+ D
Sbjct: 402 GLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSD 443
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 10/223 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH M+ FD + A L A F L+ ARK+FD +P+ +L WN LI S
Sbjct: 326 RQIHGFMVKAVADFDEFVAVGLVDMYAKHGF--LDDARKVFDFMPRRDLILWNALISGCS 383
Query: 100 SSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIKAAARPVQFRVGQAIH------GMFED 152
+ +F ++ N TL V+K+ A + +H G+ D
Sbjct: 384 HDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSD 443
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
VI N LI Y CG L A VF D++S +M++ + E AI+L+ +M
Sbjct: 444 SHVI-NGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQML 502
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ ++PD + +L+AC E G V +H+ K D+
Sbjct: 503 RKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDV 545
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
SN L+ Y+ C + A VF I VSW+S+++ + G A+ +R M V
Sbjct: 40 SNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGV 99
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWV 242
+E + VVL CA D+ FG V
Sbjct: 100 PCNEFALPVVLK-CAP--DVRFGAQV 122
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 131/262 (50%), Gaps = 31/262 (11%)
Query: 13 RHPNPTTLTVNNGHQRHPHFLTNQK-----QLKRIHAQMLSTDFFFDPYSASKLFTPCAL 67
R PNP++ HP +K LK++HA M++T F Y S++ +
Sbjct: 2 RGPNPSS--------NHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISST 53
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQ-SFMIFLQLVYNSPYFPNEFT 126
F+ +A +F+ IP P ++ +NTLI + ++ +F ++ +++ ++ PN FT
Sbjct: 54 IVFT---HALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFT 110
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFED------DLVISNSLIHFYAVCGDLAMAYCVFVMI 180
P + KA R G+A+H D + +L+++YA CG + +F I
Sbjct: 111 FPSLFKACGSQPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQI 170
Query: 181 GKKDVVSWNSMISGFVE--GGFFE------KAIELYREMEVENVKPDEVTMVVVLSACAK 232
K D+ SWNS++S +V G E + + L+ EM+ +K +EVT+V ++SACA+
Sbjct: 171 SKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAE 230
Query: 233 KRDLEFGIWVSSHIEKNGIKMD 254
L G W ++ K+ +K++
Sbjct: 231 LGALSQGAWAHVYVLKHNLKLN 252
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 94/177 (53%), Gaps = 14/177 (7%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPI--------QSFMIFLQLVYNSPYFPNEFTL 127
R +F+QI +P+L +WN+++ AY + I + +F+++ S NE TL
Sbjct: 163 CRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEM-QKSLIKANEVTL 221
Query: 128 PFVIKAAARPVQFRVGQAIHG-MFEDDL----VISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+I A A G H + + +L + +LI Y+ CG L +A +F +
Sbjct: 222 VALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPH 281
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+D + +N+MI GF G+ +A++L+++M +E + PD+VT+VV + +C+ +E G
Sbjct: 282 RDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEG 338
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 5/181 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD IP+ ++ +WN +++AY + +F ++ PNE T+ V+ A
Sbjct: 170 ARRVFDGIPRRDVVSWNAMMKAYERAGMAADVARMFRDMIDEGAVAPNEVTVAVVLAACR 229
Query: 136 RPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ + E ++ ++L+ Y CG++ A VF I KDVV+WN+
Sbjct: 230 DAGDLVLGRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNA 289
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI+G+ + G ++AI L+ M E PD++T+V VLSACA LE G + ++ G
Sbjct: 290 MITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVGALELGTELDAYASHRG 349
Query: 251 I 251
+
Sbjct: 350 L 350
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
Query: 84 PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG 143
P P +++N +R ++S+ P + +FL+++ + P+ +TLPF++ AAAR +
Sbjct: 78 PAPTAFSYNVTLRFFAST-RPRTALRLFLRML-RAALRPDAYTLPFLLLAAARAPEPPFA 135
Query: 144 QAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
++ H G+ D + +SL+ Y+ GD A VF I ++DVVSWN+M+ +
Sbjct: 136 RSAHALLCRLGLQAHDHTV-HSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYER 194
Query: 198 GGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
G ++R+M E V P+EVT+ VVL+AC DL G W+ + I++
Sbjct: 195 AGMAADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEV 251
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 7/170 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD I ++ WN +I Y+ + ++ +F + P++ TL V+ A A
Sbjct: 272 ARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGAS-PDKITLVGVLSACA 330
Query: 136 RPVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G A H ++ + +L+ Y+ CGDL A VF + K+ +WN+
Sbjct: 331 AVGALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATWNA 390
Query: 191 MISGFVEGGFFEKAIELYREME-VENVKPDEVTMVVVLSACAKKRDLEFG 239
+I G G +AI + M E ++PD++T + VLSAC L+ G
Sbjct: 391 LICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLLKDG 440
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 133/271 (49%), Gaps = 56/271 (20%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL---------------EYARKMFD 81
KQL ++HA ++T + + +S L T L+ F++L YA +F+
Sbjct: 29 KQLHQVHAHTITTGLLWGLHHSSLLLTN-ILTAFTALLPTTNASPTTPAALTGYALSVFN 87
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQF 140
+IP P+ + +NT+IRA++ P+ + +IF+++ S P P+ T PF +KA +
Sbjct: 88 RIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVP--PDTHTFPFCLKACSLLPAL 145
Query: 141 RVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
+ Q +H F DL + N+LIH Y+V L A VF KDVVS+N++I GF
Sbjct: 146 SLAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNETSLKDVVSYNALIGGF 205
Query: 196 VEGG-------FFEK-------------------------AIELYREMEVENVKPDEVTM 223
++ G F+K AI+L+ M + V+PD + +
Sbjct: 206 IKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRPDNIAL 265
Query: 224 VVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
V LSACA+ +LE G + +I++N I ++
Sbjct: 266 VSALSACAQLGELEQGKSIHVYIKQNRIPIN 296
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
+ AR++FD++P + +W TL+ Y+ S + + + S P+ L + A
Sbjct: 212 DRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRPDNIALVSALSA 271
Query: 134 AARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A+ + G++IH + + + +S L+ YA CG + A +F K++ +W
Sbjct: 272 CAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAREIFESSPDKNLFTW 331
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
N+++ G G ++ + M +KPD V+ + +L C
Sbjct: 332 NALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLGILVGCG 374
>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
Length = 483
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
S ++YA ++F QI PNL+ +N +IR +S S P Q+F ++Q P+ T PF
Sbjct: 14 LSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQ-SQRQGLLPDNLTFPF 72
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHF-YAVCGDLAMAYCVFVMIGKK 183
++K+ + +G HG FE D+ + NSL+H + CGD+ A +F + +K
Sbjct: 73 LVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMGFNKCGDVESARKLFDQMPEK 132
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
++V+W++MISG+ + F+KA+EL++ ++ + V+ +E MV+
Sbjct: 133 NLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVI 174
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 100/199 (50%), Gaps = 27/199 (13%)
Query: 43 HAQMLSTDFFFDPYSASKL----FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
H ++ F D Y + L F C +E ARK+FDQ+P+ NL TW+T+I Y
Sbjct: 90 HGHIIKHGFEKDVYVQNSLVHMGFNKCG-----DVESARKLFDQMPEKNLVTWSTMISGY 144
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISN 158
+ ++ ++ +F +++ + NE + VIK +GM +L++
Sbjct: 145 AQNNHFDKAVELF-KVLQSQGVRANETVM--VIK--------------NGM-TLNLILGT 186
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
+L+ YA CG + A VF + ++D +SW ++I+G G+ E++++ + M + P
Sbjct: 187 ALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTP 246
Query: 219 DEVTMVVVLSACAKKRDLE 237
++T VLSAC+ LE
Sbjct: 247 RDITFTAVLSACSHGGLLE 265
>gi|297722397|ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
gi|53749418|gb|AAU90276.1| PPR repeat containing protein [Oryza sativa Japonica Group]
gi|108710059|gb|ABF97854.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|215707171|dbj|BAG93631.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa Japonica Group]
Length = 616
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 109/185 (58%), Gaps = 6/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +FD++ ++ +W T+I AY Q+ +F ++V + + PNEFT+ V+KA A
Sbjct: 234 ASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMV-SEGFRPNEFTVCSVLKACA 292
Query: 136 RPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R G+ +H M+++D+ I ++L+ YA CG++ A VF M+ +++ ++W S
Sbjct: 293 EEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTS 352
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG+ + G EKAI L+R+M++ V + +T+V +LSAC + G + + I KN
Sbjct: 353 MISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNS 412
Query: 251 IKMDL 255
++ +L
Sbjct: 413 MEENL 417
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 117/221 (52%), Gaps = 7/221 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
++R+HA + + + A+ L + A + F + AR++FD++P+ ++ +W ++ Y
Sbjct: 99 VRRVHAVAVRSLDSLGTFVANNLIS--AYARFDEVSDAREVFDEMPERSVVSWTAMMNVY 156
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE----DDL 154
+ +F +V S N T ++K+ ++GQ +H ++
Sbjct: 157 LKLGHYGEVVRLFFDMV-GSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNV 215
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ +++ HFYA CGD+A A +F + +DV+SW +MI+ +V+ G +A+ ++ EM E
Sbjct: 216 IVDSAIAHFYAQCGDVASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSE 275
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+P+E T+ VL ACA+++ + FG + + K K D+
Sbjct: 276 GFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDI 316
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 8/214 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H +L + D + S L T + + A+ +FD +P+ N TW ++I Y+
Sbjct: 301 KQLHCAVLKKMYKNDIHIGSALVT--MYARCGEVFDAQAVFDMMPRRNTITWTSMISGYA 358
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S ++ ++F ++ F N T+ ++ A +G+ +H E++L
Sbjct: 359 QSGHGEKAILLFRKMKMRR-VFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENL 417
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L+ FY CG+ A + + +D +SW ++ISG+ G +A++ +M +
Sbjct: 418 QIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWD 477
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
VKP+ T L ACAK L++G + + K
Sbjct: 478 GVKPNTYTYSSALKACAKLEALQYGRKIHGFVNK 511
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 17/207 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +HAQ++ + S L + C T YA ++ + +P + +W LI
Sbjct: 402 KELHAQIIKNSMEENLQIGSTLVWFYCKCGEYT-----YAARILEAMPDRDAISWTALIS 456
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE----- 151
Y++ +++ ++++ PN +T +KA A+ + G+ IHG
Sbjct: 457 GYNNLGHNVEALKSLDDMLWDGVK-PNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDF 515
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ + +SLI Y CG + A VF + + ++V+W +I+GF + G E+A++ M
Sbjct: 516 SNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNLVTWKVIITGFAQNGLCEEALKYMYLM 575
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEF 238
+ E + D+ + VL++C DL++
Sbjct: 576 QQEGHEVDDFVLSTVLTSCG---DLQW 599
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 128/266 (48%), Gaps = 21/266 (7%)
Query: 2 ETLSTPVISIPRHPNPTTLTVNNGHQRHPHFLT---NQKQL---KRIHAQMLSTDFFFDP 55
+ L+T +I I H + L NQK + +R+H + + + +
Sbjct: 19 DNLTTALILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRND 78
Query: 56 YSAS----KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF 111
Y + K++ C S L+ +R +FD + NL WN L+ Y+ + +F
Sbjct: 79 YVLNTRLIKMYAMCG----SPLD-SRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVF 133
Query: 112 LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAV 166
+ LV ++ + P+ FT P VIKA + R+G+ IHGM D+ + N+L+ Y
Sbjct: 134 MDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGK 193
Query: 167 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVV 225
CG + A VF + + ++VSWNSMI F E GF + +L EM E + PD VT+V
Sbjct: 194 CGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVT 253
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGI 251
+L CA + +++ G+ + K G+
Sbjct: 254 ILPVCAGEGEVDIGMGIHGLAVKLGL 279
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 42 IHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
IH ++ D + + L + C +++ A K+FD +P+ NL +WN++I A+
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCG-----AVDEAMKVFDFMPETNLVSWNSMICAF 222
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
S + SF + ++++ P+ T+ ++ A + +G IHG+ ++
Sbjct: 223 SENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEE 282
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
++++N++++ Y+ CG L A FV K+VVSWN+MIS F G +A L +EM++
Sbjct: 283 VMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQI 342
Query: 214 --ENVKPDEVTMVVVLSACAKKRDL 236
E +K +EVT++ VL AC K L
Sbjct: 343 QGEEMKANEVTILNVLPACLDKLQL 367
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + +L A K+F I + +WN LI ++ + +P ++ + Q+ Y S P+ F
Sbjct: 394 AYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTY-SGQQPDWF 452
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ ++ A A + G+ IHG E D + SL+ Y CG + A +F +
Sbjct: 453 TISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRM 512
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
K++VSWN+MISG+ + G +++ L+R+ E ++ E+ +V V AC++ L G
Sbjct: 513 KDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLG 571
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL-VYNSPYFPNEFT 126
S L A+ F + N+ +WNT+I A+S + ++F + ++ + NE T
Sbjct: 294 SKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVT 353
Query: 127 LPFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ V+ A +Q R + +HG F+ + +SN+ I YA CG L A VF IG
Sbjct: 354 ILNVLPACLDKLQLRSLKELHGYSFRHCFQH-VELSNAFILAYAKCGALNSAEKVFHGIG 412
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
K V SWN++I G + G KA+ L +M +PD T+ +L ACA + L++G
Sbjct: 413 DKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKE 472
Query: 242 VSSHIEKNGIKMD 254
+ ++ +NG++ D
Sbjct: 473 IHGYVLRNGLETD 485
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 16/210 (7%)
Query: 40 KRIHAQML----STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
K IH +L TDFF S + C ++ AR +FD++ NL +WN +I
Sbjct: 471 KEIHGYVLRNGLETDFFVGTSLLSH-YIHCGKAS-----SARVLFDRMKDKNLVSWNAMI 524
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MF 150
YS + P +S +F + + + +E + V A ++ R+G+ HG +
Sbjct: 525 SGYSQNGLPYESLALFRKSL-SEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQ 583
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+D + S+I YA G + + VF + K+V SWN++I G ++AIELY
Sbjct: 584 TEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYER 643
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
M+ PD T + +L AC +E G+
Sbjct: 644 MKKVGQMPDRFTYIGILMACGHAGLVEEGL 673
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 9/166 (5%)
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
WNT+IR YS SD P ++ ++++ ++ PN FT PF++ + AR G +H
Sbjct: 2 WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
FE DL + N+LIH Y+V G+L +A +F +D+VS+N+MI G+ E E A+
Sbjct: 62 IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
L+ EM+ DEVT+V VLSACA+ + G + +NG+
Sbjct: 122 CLFGEMQ----NSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGV 163
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 105/193 (54%), Gaps = 17/193 (8%)
Query: 59 SKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
S LF AL S F +L AR +FD+ +L ++NT+I+ Y+ ++P + +F ++
Sbjct: 68 SDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEM 127
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCG 168
NS +E TL V+ A AR F +G+ ++ G+F + +++ +++ YA CG
Sbjct: 128 -QNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCG 182
Query: 169 DLAMAYCVFVMIGK--KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
+ A +F +GK K +NSMI+G + G E AI ++RE+ +KPDEVT V V
Sbjct: 183 SIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGV 242
Query: 227 LSACAKKRDLEFG 239
L AC +E G
Sbjct: 243 LCACGHSGLIEEG 255
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDLEFGIWVSSHI 246
WN+MI G+ +AI LY M + + P + T +L++CA+ LE G V SHI
Sbjct: 2 WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61
Query: 247 EKNGIKMDL 255
K+G + DL
Sbjct: 62 IKHGFESDL 70
>gi|125587253|gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japonica Group]
Length = 583
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 109/185 (58%), Gaps = 6/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +FD++ ++ +W T+I AY Q+ +F ++V + + PNEFT+ V+KA A
Sbjct: 201 ASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMV-SEGFRPNEFTVCSVLKACA 259
Query: 136 RPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R G+ +H M+++D+ I ++L+ YA CG++ A VF M+ +++ ++W S
Sbjct: 260 EEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTS 319
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG+ + G EKAI L+R+M++ V + +T+V +LSAC + G + + I KN
Sbjct: 320 MISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNS 379
Query: 251 IKMDL 255
++ +L
Sbjct: 380 MEENL 384
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 117/221 (52%), Gaps = 7/221 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
++R+HA + + + A+ L + A + F + AR++FD++P+ ++ +W ++ Y
Sbjct: 66 VRRVHAVAVRSLDSLGTFVANNLIS--AYARFDEVSDAREVFDEMPERSVVSWTAMMNVY 123
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE----DDL 154
+ +F +V S N T ++K+ ++GQ +H ++
Sbjct: 124 LKLGHYGEVVRLFFDMV-GSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNV 182
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ +++ HFYA CGD+A A +F + +DV+SW +MI+ +V+ G +A+ ++ EM E
Sbjct: 183 IVDSAIAHFYAQCGDVASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSE 242
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+P+E T+ VL ACA+++ + FG + + K K D+
Sbjct: 243 GFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDI 283
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 103/214 (48%), Gaps = 8/214 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H +L + D + S L T A + A+ +FD +P+ N TW ++I Y+
Sbjct: 268 KQLHCAVLKKMYKNDIHIGSALVTMYA--RCGEVFDAQAVFDMMPRRNTITWTSMISGYA 325
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S ++ ++F ++ F N T+ ++ A +G+ +H E++L
Sbjct: 326 QSGHGEKAILLFRKMKMRR-VFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENL 384
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L+ FY CG+ A + + +D +SW ++ISG+ G +A++ +M +
Sbjct: 385 QIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWD 444
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
VKP+ T L ACAK L++G + + K
Sbjct: 445 GVKPNTYTYSSALKACAKLEALQYGRKIHGFVNK 478
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 17/207 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +HAQ++ + S L + C T YA ++ + +P + +W LI
Sbjct: 369 KELHAQIIKNSMEENLQIGSTLVWFYCKCGEYT-----YAARILEAMPDRDAISWTALIS 423
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE----- 151
Y++ +++ ++++ PN +T +KA A+ + G+ IHG
Sbjct: 424 GYNNLGHNVEALKSLDDMLWDGVK-PNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDF 482
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ + +SLI Y CG + A VF + + ++V+W +I+GF + G E+A++ M
Sbjct: 483 SNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNLVTWKVIITGFAQNGLCEEALKYMYLM 542
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEF 238
+ E + D+ + VL++C DL++
Sbjct: 543 QQEGHEVDDFVLSTVLTSCG---DLQW 566
>gi|449462493|ref|XP_004148975.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 613
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 109/211 (51%), Gaps = 12/211 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE----YARKMFDQIPQPNLYTWNTLI 95
K +H ++ + D S SK C L S E +R +FDQI N+Y W ++
Sbjct: 256 KELHCYIVKNELDLD--SGSKFHIGCGLIEMYSRENNTIASRYVFDQIKSRNIYVWTAMV 313
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
Y+ +++P ++ ++F ++ PN+ +L ++ A + G+ IHG +
Sbjct: 314 SGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLMNGKQIHGYAIRKEY 373
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG-KKDVVSWNSMISGFVEGGFFEKAIELYR 209
+D+ + N+LI Y+ CG L A VF KD +SW ++IS + G EK+I LY
Sbjct: 374 HNDVTLCNALIDTYSKCGSLEYAKKVFESDSFCKDTISWTTLISAYGLYGLAEKSIRLYN 433
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+M ++KPD++T++ VLSAC + + G+
Sbjct: 434 DMVERSIKPDQITVLAVLSACGRSGLVNEGL 464
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 128/268 (47%), Gaps = 33/268 (12%)
Query: 3 TLSTP-VISIPRHPNPTTLTVNNGHQRHPHFLT------NQKQLKRIHAQMLSTDFFFDP 55
TLS P +IS P+P+ L HFL +QK++ + HA++++ +
Sbjct: 20 TLSRPDLIS----PSPSLL----------HFLQHAINHRSQKRIHQSHARVITHGLGQNT 65
Query: 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
+ +KL + A S L+ +FD +Y WN+LI Y +F F ++
Sbjct: 66 FLITKLIS--AYSICGDLKELNLIFDLASIKTVYIWNSLISGYVKKGMFHGAFGRFNEM- 122
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDL 170
P++FTL + KA+ V ++IHG F D++++NSL+ Y G+
Sbjct: 123 QKCNIVPDDFTLSILAKASNELGNVVVAKSIHGKSLRLGFISDIIVANSLMSMYFKYGEC 182
Query: 171 AMAYCVFVMIGKKDVVSWNSMISG---FVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
+ +F + +++ SWN +++G F + + ++A E R M+++ +KPD T+ +L
Sbjct: 183 KESLKLFNEMPERNSGSWNVLLAGYASFSDCFYVKEAWEAVRNMQLDGIKPDAFTISSLL 242
Query: 228 SACAK-KRDLEFGIWVSSHIEKNGIKMD 254
C L +G + +I KN + +D
Sbjct: 243 QFCGHPNGKLSYGKELHCYIVKNELDLD 270
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 112/245 (45%), Gaps = 29/245 (11%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L N K IH + L F D A+ L + + + + K+F+++P+ N +WN
Sbjct: 144 LGNVVVAKSIHGKSLRLGFISDIIVANSLMS--MYFKYGECKESLKLFNEMPERNSGSWN 201
Query: 93 TLIRAYSS-SD--------EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP-VQFRV 142
L+ Y+S SD E +++ + P+ FT+ +++ P +
Sbjct: 202 VLLAGYASFSDCFYVKEAWEAVRNMQL-------DGIKPDAFTISSLLQFCGHPNGKLSY 254
Query: 143 GQAIHGMFEDDLVISNSLIHFYAVCGDLAM---------AYCVFVMIGKKDVVSWNSMIS 193
G+ +H + + +S F+ CG + M + VF I +++ W +M+S
Sbjct: 255 GKELHCYIVKNELDLDSGSKFHIGCGLIEMYSRENNTIASRYVFDQIKSRNIYVWTAMVS 314
Query: 194 GFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
G+ + +KA+ L+ EM++++ + P++V++V +L AC+ L G + + +
Sbjct: 315 GYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLMNGKQIHGYAIRKEYH 374
Query: 253 MDLTF 257
D+T
Sbjct: 375 NDVTL 379
>gi|326512500|dbj|BAJ99605.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 621
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 110/188 (58%), Gaps = 6/188 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ A MFD++ ++ +W T+I AY ++ +F ++ + + PNEFT+ ++K
Sbjct: 237 VDGASMMFDKMTSRDVISWTTMITAYVQHGRGDKALQMFPAMI-SEGFHPNEFTVCSILK 295
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A R G+ +HG +F++D+ + ++L+ YA +++ A VF ++ +++ ++
Sbjct: 296 ACAEEKALRCGKQLHGALVKKLFKNDIHVGSALVTMYARNREVSDAQAVFDVMPRRNTIT 355
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W S+ISG+ + G E+AI L+R+M+ V + +T+V +LSAC R L G + + +
Sbjct: 356 WTSLISGYAQSGHAERAIMLFRQMKTRRVSVNNLTIVGLLSACGSLRSLCLGKELHAQVI 415
Query: 248 KNGIKMDL 255
KN I+ +L
Sbjct: 416 KNSIQENL 423
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 109/203 (53%), Gaps = 9/203 (4%)
Query: 58 ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117
A+ L T + + F + ARK+FD++P+ + +W ++ Y S + +FL ++
Sbjct: 124 ANNLIT--SYARFHEIPDARKVFDEMPERTVVSWTAMMNGYQKSGNHGEVVRLFLDMIA- 180
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAM 172
S N + ++K+ ++GQ +H G + + +++ +++ HFYA CGD+
Sbjct: 181 SGERGNSLSFVCLLKSCGEQCDGKLGQQVHCCVVKGGWSN-VIMDSAVAHFYAQCGDVDG 239
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
A +F + +DV+SW +MI+ +V+ G +KA++++ M E P+E T+ +L ACA+
Sbjct: 240 ASMMFDKMTSRDVISWTTMITAYVQHGRGDKALQMFPAMISEGFHPNEFTVCSILKACAE 299
Query: 233 KRDLEFGIWVSSHIEKNGIKMDL 255
++ L G + + K K D+
Sbjct: 300 EKALRCGKQLHGALVKKLFKNDI 322
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 8/214 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H ++ F D + S L T A + + A+ +FD +P+ N TW +LI Y+
Sbjct: 307 KQLHGALVKKLFKNDIHVGSALVTMYARN--REVSDAQAVFDVMPRRNTITWTSLISGYA 364
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S ++ M+F Q+ N T+ ++ A +G+ +H +++L
Sbjct: 365 QSGHAERAIMLFRQMKTRRVSV-NNLTIVGLLSACGSLRSLCLGKELHAQVIKNSIQENL 423
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L+ Y CG+ A + + +D V+W +MISG+ G +A++ +M +
Sbjct: 424 QIGSTLVWCYCKCGEYTYAARILEEMPDRDAVAWTAMISGYNSVGHSAEALKSLDDMLWD 483
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
V P+ T L ACAK L+ G + + K
Sbjct: 484 GVTPNTYTYSSALKACAKLEALQDGRRIHGVVNK 517
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 102/217 (47%), Gaps = 16/217 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL-FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
K +HAQ++ + S L + C ++ YA ++ +++P + W +I Y
Sbjct: 408 KELHAQVIKNSIQENLQIGSTLVWCYCKCGEYT---YAARILEEMPDRDAVAWTAMISGY 464
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DD 153
+S ++ ++++ PN +T +KA A+ + G+ IHG+ +
Sbjct: 465 NSVGHSAEALKSLDDMLWDG-VTPNTYTYSSALKACAKLEALQDGRRIHGVVNKTPAFSN 523
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + +SLI Y CG + A VF + + ++V+W +I+GF + G E+A + M+
Sbjct: 524 VFVGSSLIDMYMRCGKVDEARRVFSALPEHNLVTWKVIITGFAQNGLCEEAFKYMYLMQQ 583
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ D+ + VL++C DL+ W S I +G
Sbjct: 584 QGYDADDFMLSKVLTSCG---DLQ---WKSDSISFSG 614
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRV--GQAIHGMFEDDLVISNSLIHFYAVCGDLAMAY 174
+SP P+ TL +++ R G A+ + ++N+LI YA ++ A
Sbjct: 82 HSPISPDAETLASWLRSCGAVADVRGVHGVAVRSPDGPGIFLANNLITSYARFHEIPDAR 141
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
VF + ++ VVSW +M++G+ + G + + L+ +M + + ++ V +L +C ++
Sbjct: 142 KVFDEMPERTVVSWTAMMNGYQKSGNHGEVVRLFLDMIASGERGNSLSFVCLLKSCGEQC 201
Query: 235 DLEFGIWVSSHIEKNG 250
D + G V + K G
Sbjct: 202 DGKLGQQVHCCVVKGG 217
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 106/207 (51%), Gaps = 10/207 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP--NLYTWNTLIRA 97
K+IHA +L F D +S + L F SLE AR++FD +PQ N +WN +I A
Sbjct: 114 KQIHAHVLKFGFGADGFSLNNLIH--MYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAA 171
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED----- 152
Y S+ ++F +F ++ + ++F ++ A G+ IHG E
Sbjct: 172 YVQSNRLHEAFALFDRMRLENVVL-DKFVAASMLSACTGLGALEQGKWIHGYIEKSGIEL 230
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D ++ ++I Y CG L A VF + +K + SWN MI G G E AIEL++EME
Sbjct: 231 DSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEME 290
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFG 239
E V PD +T V VLSACA +E G
Sbjct: 291 REMVAPDGITFVNVLSACAHSGLVEEG 317
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 37/251 (14%)
Query: 14 HPNPTTLTVNNGHQRHPHFL---TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF 70
+P +L+ H+ + L + +LK+ H+Q++ D + ++ CA+S
Sbjct: 8 QASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKS 67
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L + Q+ + ++ ++ ++ S PN+FT P +
Sbjct: 68 GYLRW------QLARNCIFMYSRMLHKSVS---------------------PNKFTYPPL 100
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD- 184
I+A G+ IH F D N+LIH Y L A VF + ++D
Sbjct: 101 IRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDR 160
Query: 185 -VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
VSWN+MI+ +V+ +A L+ M +ENV D+ +LSAC LE G W+
Sbjct: 161 NSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIH 220
Query: 244 SHIEKNGIKMD 254
+IEK+GI++D
Sbjct: 221 GYIEKSGIELD 231
>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 833
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 104/204 (50%), Gaps = 8/204 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH ++ + D + AS L S F E A +F +P NL WN++I Y +
Sbjct: 465 IHGFVIKSGLQLDVFVASSLLD--MYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRN 522
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVI 156
+ P S +F Q++ N Y P+ + V+ A + G+++HG DL +
Sbjct: 523 NLPDLSINLFSQVLRNDLY-PDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQV 581
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+LI Y CG L A +F I +K++V+WNSMI G+ G KAIEL+ EM +
Sbjct: 582 ENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGI 641
Query: 217 KPDEVTMVVVLSACAKKRDLEFGI 240
KPD+VT + +LS+C +E G+
Sbjct: 642 KPDDVTFLSLLSSCNHSGLIEEGL 665
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 115/224 (51%), Gaps = 14/224 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFT---PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++H + F DPY + L T C + +E A K+F+++P + WN LI
Sbjct: 261 KQVHCDAIKVGFEDDPYVHTSLLTMYGKCQM-----IESAEKVFNEVPDKEIELWNALIS 315
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
AY + + I+ Q+ + FT+ V+ +++ + +G+ IH +
Sbjct: 316 AYVGNGYAYDALRIYKQMKL-CTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQ 374
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ I ++L+ Y+ GD A +F + ++DVV+W S+ISGF + +++A++ +R M
Sbjct: 375 SSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAM 434
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E + VKPD M ++SAC ++ G + + K+G+++D+
Sbjct: 435 EADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDV 478
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 30/231 (12%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQP--- 86
L+N + K IH+ +++T D Y S L + C TF+ A K+FDQ+P+
Sbjct: 66 LSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCG--TFTD---AVKVFDQLPKSGVS 120
Query: 87 --NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
++ WN++I Y + ++ M+ + +S Y + ++++
Sbjct: 121 VDDVTIWNSIIDGYFRFGQ-LEEGMVQFGRMQSSGYKEGKQIHSYIVR------------ 167
Query: 145 AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI-GKKDVVSWNSMISGFVEGGFFEK 203
M D + +LI Y CG A +F + + ++V+WN MI GF E G +E
Sbjct: 168 ---NMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWEN 224
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++E Y + ENVK + LSAC + + FG V K G + D
Sbjct: 225 SLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDD 275
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 17/232 (7%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIP-QPNLYTWN 92
K+ K+IH+ ++ FDP+ + L + C T AR +F ++ + N+ WN
Sbjct: 156 KEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPT-----EARYLFKKLKDRSNIVAWN 210
Query: 93 TLIRAYSSSDEPIQSFMIFL-QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG--- 148
+I + + S +L N + FT V F G+ +H
Sbjct: 211 VMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSF--GKQVHCDAI 268
Query: 149 --MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
FEDD + SL+ Y C + A VF + K++ WN++IS +V G+ A+
Sbjct: 269 KVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALR 328
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+Y++M++ V D T++ VL++ + + G + + I K ++ +T +
Sbjct: 329 IYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQ 380
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 6/196 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S F YA +F + + ++ W ++I + + + + F + + P+ +
Sbjct: 388 SKFGDSNYANSIFSTMKERDVVAWGSVISGFCQ-NRKYKEALDFFRAMEADLVKPDSDIM 446
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+I A + +G IHG + D+ +++SL+ Y+ G A +F +
Sbjct: 447 ASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPL 506
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
K++V+WNS+IS + + +I L+ ++ ++ PD V+ VL+A + L G V
Sbjct: 507 KNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSV 566
Query: 243 SSHIEKNGIKMDLTFE 258
++ + I DL E
Sbjct: 567 HGYLVRLWIPFDLQVE 582
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 112 LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAV 166
L+L SP + FT P ++KA A + G+ IH D I++SLI+ Y
Sbjct: 41 LKLYTKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVK 100
Query: 167 CGDLAMAYCVFVMIGKK-----DVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
CG A VF + K DV WNS+I G+ G E+ + + M+ K
Sbjct: 101 CGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYK 156
>gi|255569195|ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535145|gb|EEF36825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 125/229 (54%), Gaps = 22/229 (9%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
++ K IH Q++++ F ++ ++ + L+ C + + A KMFD++ + +L WNT
Sbjct: 159 RRGKEIHGQLITSGFSWNLFAMTAVVSLYCKCRV-----IGDAYKMFDRMTERDLVCWNT 213
Query: 94 LIRAYSSSDEPIQSFMIFLQLV---YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
+I Y+ + + L+LV + + P+ T+ V+ A A R G+AIH
Sbjct: 214 IISGYAQNGLT----KVALELVPKIFEEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYV 269
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
F+ + IS +L+ Y+ C L A +F +G + VV+WNSMI+G VE G E+A
Sbjct: 270 IRAGFDWLVNISTALVDMYSKCDSLGTARVIFDGMGSRTVVTWNSMIAGCVENGDPEEAK 329
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
L+++M E ++P +VT++ VL ACA DLE G +V +E +K+D
Sbjct: 330 VLFKKMMDEGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVED--LKLD 376
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 92/169 (54%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +++A +F+ + L +WN +I Y+ + ++ F ++ + P+ FT+
Sbjct: 390 SKCKQVDFAANLFENLQNRTLVSWNAMILGYAQNGRLNEALNFFCEM-QSQNIKPDSFTM 448
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
VI A A R + IHG+ +D + + +L+ YA CG + A +F M+ +
Sbjct: 449 VSVIPALAELSIPRQAKWIHGLVIRRLLDDTVFVMTALVDMYAKCGAIHTARKLFNMMSE 508
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ V++WNSMI + G ++A++L+ EM+ +KP++VT + VLSAC+
Sbjct: 509 RHVITWNSMIDAYGTHGLGKEAVQLFVEMQKGTIKPNDVTFLCVLSACS 557
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IHA ++ F + ++ L S SL AR +FD + + TWN++I
Sbjct: 263 KAIHAYVIRAGFDWLVNISTALVD--MYSKCDSLGTARVIFDGMGSRTVVTWNSMIAGCV 320
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
+ +P ++ ++F +++ + P + T+ V+ A A G+ +H + ED ++
Sbjct: 321 ENGDPEEAKVLFKKMM-DEGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNV 379
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ NSLI Y+ C + A +F + + +VSWN+MI G+ + G +A+ + EM+ +
Sbjct: 380 SVMNSLISMYSKCKQVDFAANLFENLQNRTLVSWNAMILGYAQNGRLNEALNFFCEMQSQ 439
Query: 215 NVKPDEVTMVVVLSACAK 232
N+KPD TMV V+ A A+
Sbjct: 440 NIKPDSFTMVSVIPALAE 457
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 147 HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+G + ++L LI + G L A VF I K +++M+ GF + + A+
Sbjct: 70 NGFYSEEL-FQTKLISLFCNYGSLTEAARVFEPIENKLEALYHTMLKGFAKNSSLDSALL 128
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ M+ +NV+P +L+ C DL G + + +G +L
Sbjct: 129 FFCRMKHDNVRPVVYNFTYLLTLCGDNFDLRRGKEIHGQLITSGFSWNL 177
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 97/169 (57%), Gaps = 5/169 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FD +P+ NL +WN +I Y + +P ++ +F +L ++ + PNE T+ ++ A A
Sbjct: 249 ARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIA 308
Query: 136 RPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ +H + + + SL+ Y CG+++ A VF I KK+ +WN+
Sbjct: 309 TLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETATWNA 368
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+I+GF G +A+E + EM+ E +KP+++TM VLSAC+ +E G
Sbjct: 369 LINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEG 417
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 107/216 (49%), Gaps = 15/216 (6%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
H ++ F FD Y ++ L A F +L ARK+F+ +P +L +W LI Y
Sbjct: 125 HGHVVKIGFCFDMYVSTALVDMYA--KFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRG 182
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPF--VIKAAARPVQFRVGQAIHGMFEDDLVIS-NS 159
+ ++ +F P + F +I + +++ + VIS S
Sbjct: 183 DMGNAWFLF-------KLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTS 235
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV-KP 218
+I+ Y GD+ A +F + +K++VSWN+MI G+ + +A++L+RE++ V +P
Sbjct: 236 MIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEP 295
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+EVT+V +L A A LE G WV +++ K+D
Sbjct: 296 NEVTVVSILPAIATLGALELGEWVHRFVQRK--KLD 329
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 8/182 (4%)
Query: 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP-QPNLYTWNTL 94
+K L +IHA +L + +K T C SS +AR +FD + + + N++
Sbjct: 15 RKTLLQIHALILRNAIDANVNILTKFITTCG--QLSSTRHARHLFDNRSHRGDTFLCNSM 72
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----M 149
I+++ + +F ++ L + + P+ FT + K A + G HG
Sbjct: 73 IKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLETHGHVVKIG 132
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F D+ +S +L+ YA G+L +A VF + + +VSW ++I G+V G A L++
Sbjct: 133 FCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFK 192
Query: 210 EM 211
M
Sbjct: 193 LM 194
>gi|255540955|ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550657|gb|EEF52144.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 124/254 (48%), Gaps = 43/254 (16%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+IH+ ++ P A+ L L S ++YAR++FDQ+PQP +N+LI
Sbjct: 17 QLKQIHSLII----IKHPSLATVLVRK--LLNLSDIDYARQLFDQVPQPGQILYNSLIST 70
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS + F + ++S + FT P VIKA + + VG+ +H + +
Sbjct: 71 YSKLSLHKDALKTFFSM-HHSDTRLSCFTGPPVIKACSSLLAIDVGKQVHSLIVICGIDC 129
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD---------------------------- 184
++ + SL+ FYA G+L A +F I KD
Sbjct: 130 NVYVQTSLMDFYAKIGELGSARKIFDGILVKDPISYNCLITGYSKAGDVIAARRLFDSMT 189
Query: 185 ---VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
VVSWN+MIS + G + ++ + M+ E++ P+E+T+V +LS CAK DLE G+
Sbjct: 190 ERTVVSWNAMISCYAHNGDLNEGLKTFERMQAEDISPNEITLVTLLSICAKLGDLEMGLR 249
Query: 242 VSSHIEKNGIKMDL 255
+ +IE N + +++
Sbjct: 250 IKKYIEDNNLCVNM 263
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 108/199 (54%), Gaps = 8/199 (4%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
DP S + L T S + AR++FD + + + +WN +I Y+ + + + F +
Sbjct: 161 DPISYNCLIT--GYSKAGDVIAARRLFDSMTERTVVSWNAMISCYAHNGDLNEGLKTF-E 217
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCG 168
+ PNE TL ++ A+ +G I ED+ +++S +++ Y CG
Sbjct: 218 RMQAEDISPNEITLVTLLSICAKLGDLEMGLRIKKYIEDNNLCVNMIVSTAILEMYVKCG 277
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
+ A F +G++D+V+W++MI+G+ + G +A+EL+ M E VKP++VT+V VLS
Sbjct: 278 AVDDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMRREKVKPNDVTLVSVLS 337
Query: 229 ACAKKRDLEFGIWVSSHIE 247
AC + +E G ++ S++E
Sbjct: 338 ACVQLGSVEMGNYIGSYVE 356
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 10/163 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+++ ARK FD++ Q ++ W+ +I Y+ + ++ +F + + PN+ TL V
Sbjct: 277 GAVDDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELF-ECMRREKVKPNDVTLVSV 335
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A + +G I E + SN +L+ Y+ CG+++ A VF +KD+
Sbjct: 336 LSACVQLGSVEMGNYIGSYVESQDLASNVYVASALVGMYSKCGNISKAREVFGKTPQKDI 395
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
V+WNSMI G GF + AI LYR M+ + D M V+L+
Sbjct: 396 VTWNSMIVGLAVNGFAKDAIALYRNMK----EADPALMQVLLN 434
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 14/234 (5%)
Query: 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFT-PCALSTFSSLEYARKMFDQIPQPNL 88
PH ++L++ HA ++ T +KL T CA S+ Y R++F + P+
Sbjct: 21 PHL----RRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAG---SIAYTRRLFRSVSDPDS 73
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+ +N+LI+A S + + + + +++ S P+ +T VIKA A +G +H
Sbjct: 74 FLFNSLIKASSKFGFSLDAVLFYRRMLL-SRIVPSTYTFTSVIKACADLSLLCIGTLVHS 132
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
+ D + +LI FYA +A VF + ++ +V+WNSMISG+ + G +
Sbjct: 133 HVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANE 192
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
A+E++ +M V+PD T V VLSAC++ L+FG W+ I +GI M++
Sbjct: 193 AVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVL 246
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 11/197 (5%)
Query: 44 AQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++ + F Y AS F AL F + ARK+FD++PQ ++ WN++I Y
Sbjct: 127 GTLVHSHVFVSGY-ASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYE 185
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
+ ++ +F ++ S P+ T V+ A ++ G +H ++
Sbjct: 186 QNGLANEAVEVFNKM-RESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNV 244
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V++ SL++ ++ CGD+ A VF + + +VV W +MISG+ G+ +A+E++ M+
Sbjct: 245 VLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKAR 304
Query: 215 NVKPDEVTMVVVLSACA 231
V P+ VT V VLSACA
Sbjct: 305 GVVPNSVTFVAVLSACA 321
>gi|255547359|ref|XP_002514737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546341|gb|EEF47843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 124/250 (49%), Gaps = 26/250 (10%)
Query: 7 PVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCA 66
+ S +P T L + H + K LK+IHA ++ + F LF
Sbjct: 36 ALCSTNTNPKDTCLYKEQLLKSHFKKCSTVKDLKQIHACIVQSGF------EQNLFVI-- 87
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
+F+ I P+ + WNT+IR + S+EP ++F + ++ + FT
Sbjct: 88 ------------VFENIECPDEFLWNTMIRGFGKSNEPQRAFEYYKRM-QEEGLMADNFT 134
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
F+IK + +G+ +H FE + + N+LIH Y + D ++ +F I
Sbjct: 135 FSFLIKVCGQLGSVLLGKQMHCSVLKYGFESHVFVRNTLIHMYGIFKDFEISRQLFEEIP 194
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
++V+WN++I +V+ G F++A++++ M +++PDE T+VV+L+AC+ +L+ G W
Sbjct: 195 SPELVAWNTVIGCYVDCGRFKEALDMFSRMLKLHIEPDEATLVVILAACSALGELDIGRW 254
Query: 242 VSSHIEKNGI 251
+ S I G+
Sbjct: 255 IHSCISNTGL 264
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 13/171 (7%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFT 126
F E +R++F++IP P L WNT+I Y E + F L+L P+E T
Sbjct: 180 FKDFEISRQLFEEIPSPELVAWNTVIGCYVDCGRFKEALDMFSRMLKLHIE----PDEAT 235
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIG 181
L ++ A + + +G+ IH + + I+NS+I YA CG L AY F +
Sbjct: 236 LVVILAACSALGELDIGRWIHSCISNTGLGRFVEINNSIIDMYAKCGALEEAYEAFNKMS 295
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACA 231
+++ V+WN+MI G G +A+ L+ +M E + ++PD VT + VL AC+
Sbjct: 296 QRNTVTWNTMILGLATHGHTNEALVLFSKMLEQKLMEPDSVTFLGVLCACS 346
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 10/188 (5%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H ++ Q+K+IHAQ+L + + + KL A S + A +F+QI P++
Sbjct: 25 HRCSSLNQVKQIHAQVLKANLHRESFVGQKLIA--AFSLCRQMTLAVNVFNQIQDPDVLL 82
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
+NTLIRA+ + EP+ +F +F ++ +S + FT PF++KA + V RV + IH
Sbjct: 83 YNTLIRAHVRNSEPLLAFSVFFEM-QDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQV 141
Query: 151 ED-----DLVISNSLIHFYAVCG--DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
E D+ + NSLI Y CG +A A VF ++ ++D VSWNSMI G V+ G +
Sbjct: 142 EKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGE 201
Query: 204 AIELYREM 211
A L+ EM
Sbjct: 202 ARRLFDEM 209
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 6/168 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ AR +FD++P NL W +I Y+ + ++ Q+ F ++ T+
Sbjct: 256 SKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKF-DDGTV 314
Query: 128 PFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ A A +G+ +H F+ +SN+LI YA CG L A +F + +
Sbjct: 315 ISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVR 374
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
KDVVSWN++I G G EKA++L+ M+ E PD+VT V VL AC
Sbjct: 375 KDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCAC 422
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 10/214 (4%)
Query: 42 IHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
IHAQ+ F D P S + C L ++ ARK+F+ + + + +WN++I
Sbjct: 137 IHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAA---ARKVFEVMAERDTVSWNSMIGGL 193
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISN 158
E ++ +F ++ N L +KA F + M ++V +
Sbjct: 194 VKVGELGEARRLFDEMPERDTVSWNTI-LDGYVKAGEMNAAFEL---FEKMPARNVVSWS 249
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
+++ Y+ GD+ MA +F + K++V W MISG+ E G + AI LY +ME +K
Sbjct: 250 TMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKF 309
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
D+ T++ +LSACA L G V + IE+ K
Sbjct: 310 DDGTVISILSACAVSGLLGLGKRVHASIERTRFK 343
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%)
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ LI +++C + +A VF I DV+ +N++I V A ++ EM+
Sbjct: 51 VGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSG 110
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V D T +L AC+ K + + + +EK G +D+
Sbjct: 111 VCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDI 150
>gi|147788829|emb|CAN73311.1| hypothetical protein VITISV_018159 [Vitis vinifera]
Length = 725
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 15/224 (6%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
IHA+ + + + D + + L + ++ +A+ +F I P++ +W ++I S
Sbjct: 31 EIHARAIKSGHYSDIFIQNTLLHSYVVE--NNXVFAKSVFKSISSPDVVSWTSIISGLSK 88
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLV 155
++ FL + PN TL V+ A R G+AIHG M D+++
Sbjct: 89 CGFDEEAIGEFLSMDVK----PNTSTLVSVVSACCGLRAVRFGKAIHGYSLRSMDGDNII 144
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVE 214
+ N+L+ FY CG L A +F+ + ++DV+SW +M+ G +GG E+A+E+++ M +
Sbjct: 145 LDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGG 204
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
P+EVT+V VL+AC+ L G WV S+I I+ DL +
Sbjct: 205 EAVPNEVTLVNVLTACSSLSALNLGRWVHSYIS---IRYDLVVD 245
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 89/171 (52%), Gaps = 6/171 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+ +F ++ + ++ +W T++ + ++ +F +V PNE TL V+ A +
Sbjct: 162 AKYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACS 221
Query: 136 RPVQFRVGQAIHGMF--EDDLVI----SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+G+ +H DLV+ N+LI+ YA C D+ MA VF + KD++SW+
Sbjct: 222 SLSALNLGRWVHSYISIRYDLVVDGNVGNALINMYAKCSDMYMAVRVFNELTHKDMISWS 281
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++I G G A++ + M V V PD+VT + +LSAC+ +E G+
Sbjct: 282 TIIGGMAMNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSACSHAGLVEQGL 332
>gi|449519723|ref|XP_004166884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 636
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 109/211 (51%), Gaps = 12/211 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE----YARKMFDQIPQPNLYTWNTLI 95
K +H ++ + D S SK C L S E +R +FDQI N+Y W ++
Sbjct: 256 KELHCYIVKNELDLD--SGSKFHIGCGLIEMYSRENNTIASRYVFDQIKSRNIYVWTAMV 313
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
Y+ +++P ++ ++F ++ PN+ +L ++ A + G+ IHG +
Sbjct: 314 SGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLMNGKQIHGYAIRKEY 373
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG-KKDVVSWNSMISGFVEGGFFEKAIELYR 209
+D+ + N+LI Y+ CG L A VF KD +SW ++IS + G EK+I LY
Sbjct: 374 HNDVTLCNALIDTYSKCGSLEYAKKVFESDSFCKDTISWTTLISAYGLYGLAEKSIRLYN 433
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+M ++KPD++T++ VLSAC + + G+
Sbjct: 434 DMVERSIKPDQITVLAVLSACGRSGLVNEGL 464
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 33/268 (12%)
Query: 3 TLSTP-VISIPRHPNPTTLTVNNGHQRHPHFLT------NQKQLKRIHAQMLSTDFFFDP 55
TLS P +IS P+P+ L HFL +QK++ + HA++++ +
Sbjct: 20 TLSRPDLIS----PSPSLL----------HFLQHAINHRSQKRIHQSHARVITHGLGQNT 65
Query: 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
+ +KL + A S L+ +FD +Y WN+LI Y +F F ++
Sbjct: 66 FLITKLIS--AYSICGDLKELNLIFDLASIKTVYIWNSLISGYVKKGMFHGAFGRFNEM- 122
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDL 170
P++FTL + KA+ V ++IHG F D++++NSLI Y G+
Sbjct: 123 QKCNIVPDDFTLSILAKASNELGNVVVAKSIHGKSLRLGFISDIIVANSLISMYFKYGEC 182
Query: 171 AMAYCVFVMIGKKDVVSWNSMISG---FVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
+ +F + +++ SWN +++G F + + ++A E R M+++ +KPD T+ +L
Sbjct: 183 KESLKLFNEMPERNSGSWNVLLAGYASFSDCFYVKEAWEAVRNMQIDGIKPDAFTISSLL 242
Query: 228 SACAK-KRDLEFGIWVSSHIEKNGIKMD 254
C L +G + +I KN + +D
Sbjct: 243 QFCGHPNGKLSYGKELHCYIVKNELDLD 270
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 112/245 (45%), Gaps = 29/245 (11%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L N K IH + L F D A+ L + + + + K+F+++P+ N +WN
Sbjct: 144 LGNVVVAKSIHGKSLRLGFISDIIVANSLIS--MYFKYGECKESLKLFNEMPERNSGSWN 201
Query: 93 TLIRAYSS-SD--------EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP-VQFRV 142
L+ Y+S SD E +++ I P+ FT+ +++ P +
Sbjct: 202 VLLAGYASFSDCFYVKEAWEAVRNMQI-------DGIKPDAFTISSLLQFCGHPNGKLSY 254
Query: 143 GQAIHGMFEDDLVISNSLIHFYAVCGDLAM---------AYCVFVMIGKKDVVSWNSMIS 193
G+ +H + + +S F+ CG + M + VF I +++ W +M+S
Sbjct: 255 GKELHCYIVKNELDLDSGSKFHIGCGLIEMYSRENNTIASRYVFDQIKSRNIYVWTAMVS 314
Query: 194 GFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
G+ + +KA+ L+ EM++++ + P++V++V +L AC+ L G + + +
Sbjct: 315 GYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLMNGKQIHGYAIRKEYH 374
Query: 253 MDLTF 257
D+T
Sbjct: 375 NDVTL 379
>gi|226501952|ref|NP_001151797.1| tetratricopeptide-like helical [Zea mays]
gi|195649749|gb|ACG44342.1| tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 92/160 (57%), Gaps = 6/160 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A ++F ++P+ N+ +WN +I YS + ++ +FL++ PNE T P V+ + A
Sbjct: 128 ADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGG-VSPNESTFPCVLTSVA 186
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
VG++IH + + D+ I NSL+ FYA CG L + F I +K+VVSWN+
Sbjct: 187 SAGTLGVGRSIHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKINRKNVVSWNA 246
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+I G+ + G E+A++ YR M +KPD +T++ +L C
Sbjct: 247 LICGYAQNGKGEEALDAYRMMRATGLKPDNLTLLGLLFGC 286
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 39/195 (20%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA--RPVQF 140
+P ++ + I A + + +F + V PNEFT V+++A R
Sbjct: 1 MPHRDVISATAAIGALTRGGRHRDALALFSR-VLAGGVAPNEFTFGTVLRSATALRVRAP 59
Query: 141 RVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC-------------------- 175
RVG +H ++ + ++L+ YA G + A
Sbjct: 60 RVGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTREPNVVSYTALIAGL 119
Query: 176 -----------VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
+F + +++VVSWN+MI G+ + G E+A+ L+ EM V P+E T
Sbjct: 120 LKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNESTFP 179
Query: 225 VVLSACAKKRDLEFG 239
VL++ A L G
Sbjct: 180 CVLTSVASAGTLGVG 194
>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Glycine max]
Length = 849
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 8/217 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IH ++ D ++ S L S S + AR +F++I ++ WN + YS
Sbjct: 478 QIHCLIIKFGVSLDSFAGSALID--VYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQ 535
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLV 155
E +S ++ L S PNEFT VI AA+ R GQ H +DD
Sbjct: 536 QLENEESLKLYKDLQM-SRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPF 594
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
++NSL+ YA CG + ++ F ++D+ WNSMIS + + G KA+E++ M +E
Sbjct: 595 VTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEG 654
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
VKP+ VT V +LSAC+ L+ G + K GI+
Sbjct: 655 VKPNYVTFVGLLSACSHAGLLDLGFHHFESMSKFGIE 691
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 9/233 (3%)
Query: 30 PHFLTNQKQLKRIHAQMLSTDFF-FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNL 88
P+ LT+ K+IHA ++ F D + + L A S + A+K+FD +P NL
Sbjct: 62 PNILTSH-YYKKIHAHIVVLGFHQHDVFLVNTLLH--AYSKMNLQSDAQKLFDTMPHRNL 118
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
TW++++ Y+ +++ ++F + + + PNE+ L V++A + +HG
Sbjct: 119 VTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHG 178
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
F D+ + SLI FYA G + A +F + K V+W ++I+G+ + G E
Sbjct: 179 FVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEV 238
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+++L+ +M +V PD + VLSAC+ LE G + ++ + G MD++
Sbjct: 239 SLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVS 291
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L N Q ++H ++ F D Y + L A + ++ AR +FD + TW
Sbjct: 167 LGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGY--VDEARLIFDGLKVKTTVTWT 224
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+I Y+ S +F Q+ Y P+ + + V+ A + G+ IHG
Sbjct: 225 AIIAGYAKLGRSEVSLKLFNQMREGDVY-PDRYVISSVLSACSMLEFLEGGKQIHGYVLR 283
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F+ D+ + N +I FY C + +F + KDVVSW +MI+G ++ F A++L
Sbjct: 284 RGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDL 343
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ EM + KPD VL++C + L+ G V ++ K I D
Sbjct: 344 FVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDND 390
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 108/221 (48%), Gaps = 10/221 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++HA + + D + + L A SL ARK+FD + N+ ++N +I YS
Sbjct: 376 RQVHAYAIKVNIDNDDFVKNGLIDMYA--KCDSLTNARKVFDLVAAINVVSYNAMIEGYS 433
Query: 100 SSDEPIQSFMIFLQLVYN-SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDD 153
D+ +++ +F ++ + SP P T ++ ++ + IH + D
Sbjct: 434 RQDKLVEALDLFREMRLSLSP--PTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLD 491
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
++LI Y+ C + A VF I +D+V WN+M SG+ + E++++LY+++++
Sbjct: 492 SFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQM 551
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+KP+E T V++A + L G + + K G+ D
Sbjct: 552 SRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDD 592
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 11/232 (4%)
Query: 29 HPHFLTNQKQLKRIHAQML-STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN 87
H T+ + L ++HA ++ S + P L A S + L YA +F P+P
Sbjct: 22 HAPLRTDPRYLPQLHAALIKSGELTGSPKCFHSLLEAAAASP-TLLPYAVSLFRLGPRPP 80
Query: 88 LYT--WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
L T +N L+RA + P + +F++++ + P++ T+ +K+ +R VG+
Sbjct: 81 LSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRG 140
Query: 146 IH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
I G+ D V+S SLIH YA C D+A A +F + + VV WN++I+ +++ G
Sbjct: 141 IQAYAVKRGLMADRFVLS-SLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNG 199
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ + +E+++ M V DE+T+V V++AC + D + G WV+ ++++ G+
Sbjct: 200 NWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGL 251
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 103/187 (55%), Gaps = 6/187 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+ +FD + + + WN +I AY + ++ +F ++ F +E TL V+ A
Sbjct: 173 AQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAF-DEITLVSVVTACG 231
Query: 136 RPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R ++G+ + ++ ++ N +LI YA CG+L A +F + +DVV+W++
Sbjct: 232 RIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSA 291
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG+ + +A+ L+ EM++ V+P++VTMV VLSACA LE G WV S+I +
Sbjct: 292 MISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKR 351
Query: 251 IKMDLTF 257
+ + +
Sbjct: 352 LSLTIIL 358
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L AR++FD + ++ W+ +I Y+ +D+ ++ +F ++ + PN+ T+ V
Sbjct: 269 GELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQL-AEVEPNDVTMVSV 327
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A G+ +H +++ +L+ FYA CG + A F + K+
Sbjct: 328 LSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNS 387
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+W ++I G G +A+EL+ M +++P +VT + VL AC+ +E G
Sbjct: 388 WTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEG 441
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 188 WNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+N ++ + G E A+ L+ EM +V +V PD+ T+ L +C++ L+ G + ++
Sbjct: 86 YNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYA 145
Query: 247 EKNGIKMD 254
K G+ D
Sbjct: 146 VKRGLMAD 153
>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g01580
gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 106/195 (54%), Gaps = 8/195 (4%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
FSS AR+MF ++ + +LY WNTL+++ S ++ + + ++ P+ FTLP
Sbjct: 7 FSSSVDARQMFGEMTKRSLYQWNTLLKSLSR-EKQWEEVLYHFSHMFRDEEKPDNFTLPV 65
Query: 130 VIKAAARPVQFRVGQAIHGMFE------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
+KA + G+ IHG + DL + +SLI+ Y CG + A +F + K
Sbjct: 66 ALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKP 125
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEV-ENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
D+V+W+SM+SGF + G +A+E +R M + +V PD VT++ ++SAC K + G V
Sbjct: 126 DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCV 185
Query: 243 SSHIEKNGIKMDLTF 257
+ + G DL+
Sbjct: 186 HGFVIRRGFSNDLSL 200
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 98/169 (57%), Gaps = 5/169 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +MFD++ +P++ TW++++ + + P Q+ F ++V S P+ TL ++ A
Sbjct: 115 ALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACT 174
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ R+G+ +HG F +DL + NSL++ YA A +F MI +KDV+SW++
Sbjct: 175 KLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWST 234
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+I+ +V+ G +A+ ++ +M + +P+ T++ VL ACA DLE G
Sbjct: 235 VIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQG 283
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 9/224 (4%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+N + + +H ++ F D + L A S + + A +F I + ++ +W+
Sbjct: 176 LSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKS--RAFKEAVNLFKMIAEKDVISWS 233
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
T+I Y + ++ ++F ++ + PN T+ V++A A G+ H +
Sbjct: 234 TVIACYVQNGAAAEALLVFNDMMDDGTE-PNVATVLCVLQACAAAHDLEQGRKTHELAIR 292
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
E ++ +S +L+ Y C AY VF I +KDVVSW ++ISGF G ++IE
Sbjct: 293 KGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEE 352
Query: 208 YREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ M +E N +PD + MV VL +C++ LE S++ K G
Sbjct: 353 FSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYG 396
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A +F +IP+ ++ +W LI ++ + +S F ++ + P+ + V+ +
Sbjct: 316 EEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGS 375
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ + H F+ + I SL+ Y+ CG L A VF I KD V W
Sbjct: 376 CSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVW 435
Query: 189 NSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACA 231
S+I+G+ G KA+E + M + VKP+EVT + +LSAC+
Sbjct: 436 TSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACS 479
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q K H+ ++ F +P+ S +L++ C SL A K+F+ I + W +
Sbjct: 383 EQAKCFHSYVIKYGFDSNPFIGASLVELYSRCG-----SLGNASKVFNGIALKDTVVWTS 437
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
LI Y + ++ F +V +S PNE T ++ A + G I + +D
Sbjct: 438 LITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVND 497
Query: 154 LVISNSLIHFYAVCGDL 170
++ +L H YAV DL
Sbjct: 498 YRLAPNLEH-YAVLVDL 513
>gi|115469756|ref|NP_001058477.1| Os06g0700100 [Oryza sativa Japonica Group]
gi|53791883|dbj|BAD54005.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113596517|dbj|BAF20391.1| Os06g0700100 [Oryza sativa Japonica Group]
gi|125598393|gb|EAZ38173.1| hypothetical protein OsJ_22527 [Oryza sativa Japonica Group]
gi|215767419|dbj|BAG99647.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 476
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 98/187 (52%), Gaps = 7/187 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SL ARK+FD+IP+P++ WNTL+ A + S P + + + P+ ++ +
Sbjct: 55 GSLAAARKLFDEIPRPDVPLWNTLLSACARSGLPQHALVTASTMARAGSSRPDNVSVTIL 114
Query: 131 IKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-KD 184
+ A AR G+ IHG + DL + N+L+ Y CG L A VF IG K
Sbjct: 115 LSACARLRSLVHGREIHGYAVRNLAALDLPLLNALVSMYGRCGRLVNARMVFDSIGSMKS 174
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK-KRDLEFGIWVS 243
VVSW MI+ E G +A++++ +M + VK DEVT++ V+SAC E G WV
Sbjct: 175 VVSWTCMINACCENGKPAEALQVFEQMRLAGVKVDEVTLLAVISACTMLDCRSELGEWVE 234
Query: 244 SHIEKNG 250
+ +NG
Sbjct: 235 EYAHENG 241
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 8/163 (4%)
Query: 76 ARKMFDQI-PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR +FD I ++ +W +I A + +P ++ +F Q+ +E TL VI A
Sbjct: 162 ARMVFDSIGSMKSVVSWTCMINACCENGKPAEALQVFEQMRLAGVKV-DEVTLLAVISAC 220
Query: 135 AR-PVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ +G+ A F ++ ++N+LIH + G + + +F I + VVSW
Sbjct: 221 TMLDCRSELGEWVEEYAHENGFLENTRVANALIHMHGKMGRVRRSCEIFDSITVRTVVSW 280
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++I G A+ + +M + +PDE+ + V++AC+
Sbjct: 281 TAIIQALAVHGHGVAALVQFSQMLRQGFQPDELVFLSVINACS 323
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
G+ L + ++L+ YA G LA A +F I + DV WN+++S G + A+
Sbjct: 35 GVLPSSLHLCSALVKSYAASGSLAAARKLFDEIPRPDVPLWNTLLSACARSGLPQHALVT 94
Query: 208 YREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M + +PD V++ ++LSACA+ R L G + + +N +DL
Sbjct: 95 ASTMARAGSSRPDNVSVTILLSACARLRSLVHGREIHGYAVRNLAALDL 143
>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Glycine max]
Length = 630
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 113/214 (52%), Gaps = 20/214 (9%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNL 88
FL+ ++HA ++ T DPY+ S L + C+L +ARK+FD++P P +
Sbjct: 66 FLSLPLAASQLHAHVIRTGSQPDPYTRSSLINTYAKCSLH-----HHARKVFDEMPNPTI 120
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLV------YNSPYFPNEFTLPFVIKAAARPVQFRV 142
+N +I YS + +P+ + +F ++ + N TL ++ + +
Sbjct: 121 -CYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTI 179
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G +HG F DL ++NSL+ Y CG++ +A VF + +D+++WN+MISG+ +
Sbjct: 180 GVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQ 239
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
G +E+Y EM++ V D VT++ V+SACA
Sbjct: 240 NGHARCVLEVYSEMKLSGVSADAVTLLGVMSACA 273
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 12/206 (5%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H + F D A+ L T +E ARK+FD++ +L TWN +I Y+ +
Sbjct: 183 LHGCCVRFGFVTDLAVANSLVT--MYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQN 240
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
++ ++ S + TL V+ A A +G+ + F + +
Sbjct: 241 GHARCVLEVYSEMKL-SGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFL 299
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+L++ YA CG+L A VF G+K VVSW ++I G+ G E A+EL+ EM V
Sbjct: 300 RNALVNMYARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAV 359
Query: 217 KPDEVTMVVVLSACA----KKRDLEF 238
+PD+ V VLSAC+ R LE+
Sbjct: 360 RPDKTVFVSVLSACSHAGLTDRGLEY 385
>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 16/239 (6%)
Query: 27 QRHPHFL---TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS---SLEYARKMF 80
+R H L ++ + +IHA +++T FF A+ F +++++ + AR +F
Sbjct: 8 KRLKHLLLACKDEAPVTQIHALIITTGLFF----ANSNFNGLVIASYARIGGITSARHLF 63
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
D++PQ + WN +I AYS + ++ Q+V N P+ T IKA++
Sbjct: 64 DKLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMV-NEGGKPDSSTFTVAIKASSSLKDL 122
Query: 141 RVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
G+ I D D+ + +S+++ Y CG + A VF + K+DVV W +MI+G
Sbjct: 123 EAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGL 182
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
V+ G +A++++R M E ++ D V M+ ++ ACA +L+ G+ V H + + MD
Sbjct: 183 VQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMD 241
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 117/241 (48%), Gaps = 18/241 (7%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFS 71
P+ +T TV + L + + +RI + + + D + S L+ C
Sbjct: 104 PDSSTFTVA---IKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCG----- 155
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
++ A+ +FD++ + ++ W T+I + +++ +F ++ L V
Sbjct: 156 KIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLV- 214
Query: 132 KAAARPVQFRVGQAIHG------MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+A A + ++G ++HG M DD+++ SL+ YA GDL +A VF + +K+
Sbjct: 215 QACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNA 274
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VSW ++ISGF + GF E A++L EM+ KPD +V L AC++ L+ G + +
Sbjct: 275 VSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGY 334
Query: 246 I 246
I
Sbjct: 335 I 335
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 93/176 (52%), Gaps = 5/176 (2%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ LE A ++F+Q+P+ N +W LI ++ + + + +++ + + P+ L
Sbjct: 254 AKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEM-QSLEFKPDTAVL 312
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
+ A ++ ++G++IHG +LV+ +LI YA CG L+ A+ +F + +
Sbjct: 313 VSALLACSQVGHLKLGKSIHGYIVRRLGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSR 372
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
DV+ WN+MI+ + G ++ + L+ +M+ N+ PD T +LSA + ++ G
Sbjct: 373 DVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVG 428
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 29/169 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SL A +FD++ ++ WNT+I +Y + + +FL++ + P+ T +
Sbjct: 357 GSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKM-KEANISPDHATFASL 415
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + Q VGQ ++ I S H+ C
Sbjct: 416 LSALSHSGQVDVGQYWFNAMVNECKIPPSEKHY--AC----------------------- 450
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
M+ F G E+A +L M N +P V +LS C R+L FG
Sbjct: 451 MVDLFSRAGRVEEAYQLIESM---NTEPGLAIWVALLSGCHNYRNLLFG 496
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 136/288 (47%), Gaps = 68/288 (23%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
+T+ + L ++HA +L + F D Y + L A FS+ ++A K+F IP PN++ WN
Sbjct: 43 ITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWN 102
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---- 148
+I+ +++ ++ + ++V ++ PN+FT P + KA + + G+ IHG
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVIDAR--PNKFTYPTLFKACSVAQAVQEGRQIHGHVVK 160
Query: 149 ----------------------------MF---EDDLVISNSLIHFYAVCGDLAMAYCVF 177
MF E D+V N++I Y CG L A +F
Sbjct: 161 HGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLF 220
Query: 178 ------------VMIG-------------------KKDVVSWNSMISGFVEGGFFEKAIE 206
VMI ++D +SW+SM+ G++ G +++A+E
Sbjct: 221 AQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALE 280
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++++M+ E +P + VL+AC+ ++ G WV +++++N IK+D
Sbjct: 281 IFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLD 328
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 6/171 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L+ +L ARK+FD++ + + +W++++ Y S+ ++ IF Q+ P F
Sbjct: 237 GLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETR-PGRF 295
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMI 180
L V+ A + G+ +H + D V+ +L+ YA CG L M + VF +
Sbjct: 296 ILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEM 355
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++++ +WN+MI G G E A+EL+ +++ +KP+ +T+V VL+ACA
Sbjct: 356 KEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACA 406
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 148 GMFEDDLVISNSLIHFYAV--CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
G F+D V S +L+ YA + A VF I +V WN +I G +E KAI
Sbjct: 60 GHFQDHYV-SGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAI 118
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
Y M V + +P++ T + AC+ + ++ G + H+ K+GI D+
Sbjct: 119 YFYGRM-VIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDV 167
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQ 85
HP L +Q K++HA+M + + Y + ++T C S+E A ++FD +
Sbjct: 324 HPEAL---EQGKKVHARMKEVGWDTEIYVGTAILSMYTKCG-----SMEDALEVFDLVKG 375
Query: 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
N+ +W +I ++ ++F+ F +++ S PN T ++ A + P + GQ
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMI-ESGIEPNRVTFMSILGACSSPSALKRGQQ 434
Query: 146 IH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
I G DD V +L+ YA CG L A+ VF I K++VV+WN+MI+ +V+
Sbjct: 435 IQDHIIEAGYGSDDRV-RTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHE 493
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++ A+ ++ + E +KP+ T +L+ C LE G WV I K G++ DL
Sbjct: 494 QYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDL 549
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 11/185 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+F C L A+ +F+ +P+ +L +WNT+I + + +F F +++ S
Sbjct: 558 MFVNCG-----DLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYF-KMMQESGI 611
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
P++ T ++ A A P G+ +H + F+ D+++ LI Y CG + A+
Sbjct: 612 KPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQ 671
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + KK+V SW SMI+G+ + G ++A+EL+ +M+ E VKPD +T V LSACA
Sbjct: 672 VFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGL 731
Query: 236 LEFGI 240
+E G+
Sbjct: 732 IEEGL 736
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 11/230 (4%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PN T G P L K+ ++I ++ + D + L + A SL+
Sbjct: 411 PNRVTFMSILGACSSPSAL---KRGQQIQDHIIEAGYGSDDRVRTALLSMYA--KCGSLK 465
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
A ++F++I + N+ WN +I AY ++ + F Q + PN T ++
Sbjct: 466 DAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATF-QALLKEGIKPNSSTFTSILNVC 524
Query: 135 ARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+G+ +H E DL +SN+L+ + CGDL A +F + K+D+VSWN
Sbjct: 525 KSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWN 584
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++I+GFV+ G + A + ++ M+ +KPD++T +L+ACA L G
Sbjct: 585 TIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEG 634
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 99/180 (55%), Gaps = 6/180 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+++FD + + ++Y+WN L+ Y ++F + Q+V +S P++ T ++ A A
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVK-PDKRTFVSMLNACA 222
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ ++ + ++ DL + +LI+ + CGD+ A VF + +D+V+W S
Sbjct: 223 DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTS 282
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI+G G F++A L++ ME E V+PD+V V +L AC LE G V + +++ G
Sbjct: 283 MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG 342
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 67/103 (65%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N+LI+ YA CG+ A +F + +KDV SWN ++ G+V+ G +E+A +L+ +M
Sbjct: 144 DIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++VKPD+ T V +L+ACA R+++ G + + I K G DL
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDL 246
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 79/202 (39%), Gaps = 38/202 (18%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+R+HA + F D + L +T C S+E A ++F ++P+ N+Y+W ++I
Sbjct: 635 RRLHALITEAAFDCDVLVGTGLISMYTKCG-----SIEDAHQVFHKLPKKNVYSWTSMIA 689
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
Y+ ++ +F Q+ P+ T + A A G+ E+ L
Sbjct: 690 GYAQHGRGKEALELFYQM-QQEGVKPDWITFVGALSACAHA----------GLIEEGLHH 738
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S+ F + + + M+ F G +A+E +M+VE
Sbjct: 739 FQSMKEFNI----------------EPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVE-- 780
Query: 217 KPDEVTMVVVLSACAKKRDLEF 238
PD +L AC ++E
Sbjct: 781 -PDSRVWGALLGACQVHLNVEL 801
>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 690
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 11/245 (4%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PN ++TV L K+ IH + L +F D Y S L F LE
Sbjct: 205 PNSVSITVAISACSRLLCLERGKE---IHRKYLKKEFELDEYVNSALVDMYGRCDF--LE 259
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR++F Q+ + +L WN++IR Y + + + +++ P++ TL ++ A
Sbjct: 260 MAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTR-PSQTTLTSILMAC 318
Query: 135 ARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+R G+ +HG + + D+ I+ SLI Y CG++ +A VF+ K V SWN
Sbjct: 319 SRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWN 378
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
MISG+V G + KA+++Y +M V+PD VT VLS C++ LE G + I ++
Sbjct: 379 VMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISES 438
Query: 250 GIKMD 254
++ D
Sbjct: 439 RLETD 443
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 117/221 (52%), Gaps = 8/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ IH ++ + D AS L A F+ E + ++FD++P+ ++ +WNT+I ++
Sbjct: 126 RMIHTVVVKSGHVCDVVVASSLVGMYA--KFNLFEDSVQVFDEMPERDVASWNTVISSFY 183
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ ++ +F ++ S + PN ++ I A +R + G+ IH FE D
Sbjct: 184 QRGDAEKALELFGRM-ERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDE 242
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++++L+ Y C L MA VF + +K +V+WNSMI G+V G + +EL M +E
Sbjct: 243 YVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIE 302
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+P + T+ +L AC++ R+L G +V ++ ++ + D+
Sbjct: 303 GTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADI 343
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 12/226 (5%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY--ARKMFDQIP-QPNLYTWNT 93
+Q K +H ++L+ D L F+ ++ AR +F+ I + ++Y WN+
Sbjct: 20 RQAKLVHQRILTVGLRSDVVLCKSLINV----YFACKDHCSARLVFENIDIRSDVYIWNS 75
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED- 152
L+ YS + + +F +L+ P+ FT P VIKA + +G+ IH +
Sbjct: 76 LVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFLGRMIHTVVVKS 135
Query: 153 ----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
D+V+++SL+ YA + VF + ++DV SWN++IS F + G EKA+EL+
Sbjct: 136 GHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGDAEKALELF 195
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
ME + +P+ V++ V +SAC++ LE G + K ++D
Sbjct: 196 GRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELD 241
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 123/265 (46%), Gaps = 21/265 (7%)
Query: 1 METLSTPVISIPRHPNPTTLT-VNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPY--- 56
+E L+ +I R P+ TTLT + R + L K +H ++ + D Y
Sbjct: 293 VELLNRMIIEGTR-PSQTTLTSILMACSRSRNLLHG----KFVHGYVIRSVVDADIYINC 347
Query: 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
S L+ C ++ A +F + + + +WN +I Y S ++ ++ Q+V
Sbjct: 348 SLIDLYFKCG-----EVKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMV- 401
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLA 171
+ P+ T V+ ++ G+ IH E D ++ ++L+ Y+ CG++
Sbjct: 402 SVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVK 461
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A +F I KKDVVSW MIS + G +A+ + EM+ VKPD VT + VLSAC
Sbjct: 462 EASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACG 521
Query: 232 KKRDLEFGI-WVSSHIEKNGIKMDL 255
++ G+ + S K GI+ +
Sbjct: 522 HAGLIDEGVKYFSQMRSKYGIEASI 546
>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 674
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 23/238 (9%)
Query: 17 PTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYA 76
T +++ H H +T R+ +LST S + C + YA
Sbjct: 26 AATQSISKTKALHCHVITG----GRVSGHILST--------LSVTYALCG-----HIAYA 68
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAA 135
RK+FD++PQ +L ++N +IR Y + +F+++V P+ +T PFV KAA
Sbjct: 69 RKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAG 128
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G IHG F D + N+L+ Y G + MA VF ++ +DV+SWN+
Sbjct: 129 ELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNT 188
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
MISG+ G+ A+ ++ M E V PD T+V +L C + LE G V +E+
Sbjct: 189 MISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEE 246
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 104/203 (51%), Gaps = 8/203 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH ++L + F D Y + L F +E AR +FD + ++ +WNT+I Y +
Sbjct: 139 IHGRILRSWFGMDKYVQNALLA--MYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRN 196
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DDLVI 156
+ M+F +V N P+ T+ ++ +G+ +H + E D + +
Sbjct: 197 GYMNDALMMFDWMV-NEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEV 255
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+L++ Y CG + A VF + ++DV++W MI+G++E G E A+EL R M+ E V
Sbjct: 256 KNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGV 315
Query: 217 KPDEVTMVVVLSACAKKRDLEFG 239
+P+ VT+ ++SAC L G
Sbjct: 316 RPNAVTIASLVSACGDALKLNDG 338
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 90/183 (49%), Gaps = 6/183 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ AR +F ++ + ++ TW +I Y D +++ + +L+ PN T+ ++
Sbjct: 269 MDEARFVFGRMERRDVITWTCMINGYIE-DGDVENALELCRLMQFEGVRPNAVTIASLVS 327
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A ++ G+ +HG D++I SLI YA C + + + VF +
Sbjct: 328 ACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGP 387
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W+++I+G V+ A++L++ M E+V+P+ T+ +L A A DL + + ++
Sbjct: 388 WSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLT 447
Query: 248 KNG 250
K G
Sbjct: 448 KTG 450
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
++F + + W+ +I A +E ++ + + + PN TL ++ A A
Sbjct: 375 RVFSGASRNHTGPWSAII-AGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATL 433
Query: 138 VQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK----DVVSW 188
R IH F L + L+H Y+ CG L A+ +F I +K DVV W
Sbjct: 434 ADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLW 493
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++ISG+ G A++++ EM V P+E+T L+AC+ +E G+
Sbjct: 494 GALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGL 545
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK--PDEV 221
YA+CG +A A +F + + ++S+N +I +V G + AI ++ M E +K PD
Sbjct: 59 YALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGY 118
Query: 222 TMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
T V A + + + G+ + I ++ MD
Sbjct: 119 TYPFVAKAAGELKSISLGLVIHGRILRSWFGMD 151
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 113/195 (57%), Gaps = 9/195 (4%)
Query: 65 CALSTFS---SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
C +S +S + AR++FD++ ++ +WN +I Y+ + + + ++IF Q + +
Sbjct: 167 CLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIF-QRMQDEMCE 225
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCV 176
PNE TL V+ A+ +G I + ++ ++++S +++ Y CG + V
Sbjct: 226 PNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLV 285
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + ++DVV+W++MI+G+ + G +A+EL+ M+ +KP++VT+V VLSACA+ +
Sbjct: 286 FDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSV 345
Query: 237 EFGIWVSSHIEKNGI 251
E G + S++E G+
Sbjct: 346 ETGERIGSYVESRGL 360
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 43/241 (17%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QLK+I A ++ P +L S ++YAR++FDQIP P+ + I A
Sbjct: 17 QLKQIQALIIIKYLSLTPLFIRRLLNA------SFIQYARQVFDQIPHPDQGVHCSFITA 70
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS ++ F+ + N+ FT+P + K+ A + VG+ +H + F
Sbjct: 71 YSRLSLNNEALRTFVSMHQNNVRIVC-FTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHS 129
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD---------------------------- 184
+ N+LI+FYA DL A +F I KD
Sbjct: 130 SVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMR 189
Query: 185 ---VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+VSWN+MIS + + G + K +++ M+ E +P+E+T+ VLS CAK DLE G+
Sbjct: 190 DRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLR 249
Query: 242 V 242
+
Sbjct: 250 I 250
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 98/186 (52%), Gaps = 11/186 (5%)
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
+++ C +++ R +FD + + ++ TW+ +I Y+ + ++ +F + + ++
Sbjct: 271 EMYVKCG-----AVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELF-ENMKSAQ 324
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAY 174
PN+ TL V+ A A+ G+ I E +ISN +L+ Y+ CG++ A
Sbjct: 325 IKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKAR 384
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
+F + ++D V+WNSMI G GF E AI LY M+ VKP+ +T V +++AC
Sbjct: 385 QIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAG 444
Query: 235 DLEFGI 240
+E G+
Sbjct: 445 HVELGL 450
>gi|168008904|ref|XP_001757146.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691644|gb|EDQ78005.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 16/227 (7%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+K++H +L + +PY A+KL + C ++ AR +FD++ + N++ W T+I
Sbjct: 18 VKQVHDCILKSGMDQNPYVANKLMRVYIRCG-----KVQDARHVFDKLVKKNVFNWTTMI 72
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-----HGMF 150
Y+ P + ++ Q+ PNE T ++KA A PV + G+ I HG F
Sbjct: 73 GGYAEHGRPADAIEVYNQMRQEGGR-PNEVTYLSILKACACPVGLKWGKEIHAHISHGGF 131
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D+ + +L++ YA G + A VF + +++V++WN MI G + GF ++A L+ +
Sbjct: 132 RSDVPVQTALVNMYAKSGSIKDARLVFDEMAERNVITWNVMIGGLAQHGFGQEAFSLFLQ 191
Query: 211 MEVENVKPDEVTMVVVL--SACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M+ E PD T + +L +AC+ L + V H K G D+
Sbjct: 192 MQEEGFVPDSTTYLSILTATACSSAGALGWVKEVHRHAVKAGFDSDM 238
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 10/225 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K K IHA + F D + L A S S++ AR +FD++ + N+ TWN +I
Sbjct: 117 KWGKEIHAHISHGGFRSDVPVQTALVNMYAKS--GSIKDARLVFDEMAERNVITWNVMIG 174
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-------QAIHGM 149
+ ++F +FLQ+ + P+ T ++ A A +G A+
Sbjct: 175 GLAQHGFGQEAFSLFLQM-QEEGFVPDSTTYLSILTATACSSAGALGWVKEVHRHAVKAG 233
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F+ D+ + N+L+H Y+ G + A VF + +DV+SW++MI G + G +A L+
Sbjct: 234 FDSDMRVCNALVHVYSKSGSVDDARLVFEGMLDRDVISWSAMIGGLAQNGCGHEAFSLFL 293
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+M+ E V P+ T V +L+A A LE+ V +H K G+ D
Sbjct: 294 KMQREGVIPNVTTYVSILTASASAGALEWVKQVHNHARKAGLGSD 338
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S++ AR +FDQ+ N++TWN +I + ++F +FL++ P+ T +
Sbjct: 353 GSIDDARLVFDQMSVRNVFTWNAMIGGLAQHGCGQEAFSLFLRM-RREGVVPDAITYMSI 411
Query: 131 IKAAARP-----VQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A+A V+ QA+ + D+ + N+L+H Y G ++ A +F + ++DV
Sbjct: 412 LNASASTGALGWVKEVHRQAVQAGLDSDVRVGNALVHMYCKTGSISDARLMFDGMVERDV 471
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
++W +MISG + ++A L+ +M+ E P T +L+ C
Sbjct: 472 ITWTAMISGLAQNECGQEAFSLFLQMQREGFIPVATTYASILNVC 516
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 8/222 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+K +H + F D + L S S++ AR +F+ + ++ +W+ +I
Sbjct: 222 VKEVHRHAVKAGFDSDMRVCNALVH--VYSKSGSVDDARLVFEGMLDRDVISWSAMIGGL 279
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDD 153
+ + ++F +FL++ PN T ++ A+A + +H D
Sbjct: 280 AQNGCGHEAFSLFLKM-QREGVIPNVTTYVSILTASASAGALEWVKQVHNHARKAGLGSD 338
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ N+L+H YA G + A VF + ++V +WN+MI G + G ++A L+ M
Sbjct: 339 FRVCNALVHMYAKSGSIDDARLVFDQMSVRNVFTWNAMIGGLAQHGCGQEAFSLFLRMRR 398
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E V PD +T + +L+A A L + V + G+ D+
Sbjct: 399 EGVVPDAITYMSILNASASTGALGWVKEVHRQAVQAGLDSDV 440
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 15/211 (7%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q+K++HA M+ F D + +L A+ +AR +FD+IP P+ + +NTLIR
Sbjct: 22 RQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTLIR 81
Query: 97 AYSSSDEPIQSFMIFLQLVYNSP------YFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
+ SD P + I+ ++ +S P++ T PFV++A A G +H
Sbjct: 82 GAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAHV 141
Query: 151 -----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
E D + N+LI +A GDL A +F ++D V+W++MISGF G A
Sbjct: 142 VKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAAR 201
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
EL+ E V+ D V+ V+++A AK D+
Sbjct: 202 ELFDESPVK----DLVSWNVMITAYAKLGDM 228
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + + AR++FD P ++ +WN +I Y Q+ +F Q+ P+
Sbjct: 221 AYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEK-PDTV 279
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMAYCVFV 178
T+ ++ A A G+ +HG + N+LI YA CG + A VF
Sbjct: 280 TMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFW 339
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++ K+V +WNS+I G G ++I ++R+M NVKPDE+T V VL+AC+
Sbjct: 340 LMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACS 392
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
DLV N +I YA GD+A A +F +DVVSWN+MISG+V G ++A+EL+ +M+
Sbjct: 211 DLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQ 270
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFG 239
KPD VTM+ +LSACA DL+ G
Sbjct: 271 AMGEKPDTVTMLSLLSACADSGDLDAG 297
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-------EVENVK 217
V G A A VF I D +N++I G A+ +Y M ++ ++
Sbjct: 53 GVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLR 112
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
PD+ T VL ACA E G V +H+ K G + D
Sbjct: 113 PDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESD 149
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQ 85
HP L +Q K++HA+M + + Y + ++T C S+E A ++FD +
Sbjct: 324 HPEAL---EQGKKVHARMKEVGWDTEIYVGTAILSMYTKCG-----SMEDALEVFDLVKG 375
Query: 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
N+ +W +I ++ ++F+ F +++ S PN T ++ A + P + GQ
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMI-ESGIEPNRVTFMSILGACSSPSALKRGQQ 434
Query: 146 IH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
I G DD V +L+ YA CG L A+ VF I K++VV+WN+MI+ +V+
Sbjct: 435 IQDHIIEAGYGSDDRV-RTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHE 493
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++ A+ ++ + E +KP+ T +L+ C LE G WV I K G++ DL
Sbjct: 494 QYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDL 549
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 11/185 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+F C L A+ +F+ +P+ +L +WNT+I + + +F F +++ S
Sbjct: 558 MFVNCG-----DLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYF-KMMQESGI 611
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
P++ T ++ A A P G+ +H + F+ D+++ LI Y CG + A+
Sbjct: 612 KPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQ 671
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + KK+V SW SMI+G+ + G ++A+EL+ +M+ E VKPD +T V LSACA
Sbjct: 672 VFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGL 731
Query: 236 LEFGI 240
+E G+
Sbjct: 732 IEEGL 736
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 11/230 (4%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PN T G P L K+ ++I ++ + D + L + A SL+
Sbjct: 411 PNRVTFMSILGACSSPSAL---KRGQQIQDHIIEAGYGSDDRVRTALLSMYA--KCGSLK 465
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
A ++F++I + N+ WN +I AY ++ + F Q + PN T ++
Sbjct: 466 DAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATF-QALLKEGIKPNSSTFTSILNVC 524
Query: 135 ARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+G+ +H E DL +SN+L+ + CGDL A +F + K+D+VSWN
Sbjct: 525 KSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWN 584
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++I+GFV+ G + A + ++ M+ +KPD++T +L+ACA L G
Sbjct: 585 TIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEG 634
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 99/180 (55%), Gaps = 6/180 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+++FD + + ++Y+WN L+ Y ++F + Q+V +S P++ T ++ A A
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVK-PDKRTFVSMLNACA 222
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ ++ + ++ DL + +LI+ + CGD+ A VF + +D+V+W S
Sbjct: 223 DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTS 282
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI+G G F++A L++ ME E V+PD+V V +L AC LE G V + +++ G
Sbjct: 283 MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG 342
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 67/103 (65%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N+LI+ YA CG+ A +F + +KDV SWN ++ G+V+ G +E+A +L+ +M
Sbjct: 144 DIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++VKPD+ T V +L+ACA R+++ G + + I K G DL
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDL 246
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 79/202 (39%), Gaps = 38/202 (18%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+R+HA + F D + L +T C S+E A ++F ++P+ N+Y+W ++I
Sbjct: 635 RRLHALITEAAFDCDVLVGTGLISMYTKCG-----SIEDAHQVFHKLPKKNVYSWTSMIT 689
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
Y+ ++ +F Q+ P+ T + A A G+ E+ L
Sbjct: 690 GYAQHGRGKEALELFYQM-QQEGVKPDWITFVGALSACAHA----------GLIEEGLHH 738
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S+ F + + + M+ F G +A+E +M+VE
Sbjct: 739 FQSMKEFNI----------------EPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVE-- 780
Query: 217 KPDEVTMVVVLSACAKKRDLEF 238
PD +L AC ++E
Sbjct: 781 -PDSRVWGALLGACQVHLNVEL 801
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 14/228 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
++ K IH Q++ F + ++ + ++ C L +E A KMFD++P+ +L WNT
Sbjct: 192 RKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRL-----VEEAYKMFDRMPERDLVCWNT 246
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+I Y+ + + + L++ P+ T+ ++ A A R+G++IHG
Sbjct: 247 IISGYAQNGFGKTALELVLRMQEEGKR-PDSITIVSILPAVADVGSLRIGRSIHGYSMRA 305
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
FE + +S +L+ Y+ CG + A +F + K VVSWNSMI G+V+ G A+E++
Sbjct: 306 GFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIF 365
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
++M E V+ VT++ L ACA D+E G +V +++ + D++
Sbjct: 366 QKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVS 413
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A ++F+ + L +WN +I Y+ + ++ F ++ + P+ FT+
Sbjct: 423 SKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQN-IKPDSFTM 481
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
VI A A + IHG+ + ++ ++ +L+ YA CG + A +F M+ +
Sbjct: 482 VSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDE 541
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ V +WN+MI G+ G + A+EL+ +M+ E +KP+EVT + VLSAC+ +E G
Sbjct: 542 RHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEG 598
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 6/180 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S S+ AR +FD++ + +WN++I Y + +P + IF +++ N T+
Sbjct: 322 SKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTN-VTV 380
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A A G+ +H + + D+ + NSLI Y+ C + +A +F +
Sbjct: 381 MGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQH 440
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
K +VSWN+MI G+ + G +AI+ + +M+++N+KPD TMV V+ A A+ L W+
Sbjct: 441 KTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWI 500
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 19/232 (8%)
Query: 20 LTVNNGHQRHPHFLTNQ----KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY 75
+ +G QR L + +Q+K++HA M+ F D + +L A+ +
Sbjct: 1 MLCKSGTQRQQPALWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAH 60
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP------YFPNEFTLPF 129
AR +FD+IP P+ + +NTLIR + SD P + I+ ++ +S P++ T PF
Sbjct: 61 ARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPF 120
Query: 130 VIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V++A A G +H E D + N+LI +A GDL A +F ++D
Sbjct: 121 VLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEARED 180
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
V+W++MISGF G A EL+ E V+ D V+ V+++A AK D+
Sbjct: 181 AVAWSAMISGFARRGDIGAARELFDESPVK----DLVSWNVMITAYAKLGDM 228
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + + AR++FD P ++ +WN +I Y Q+ +F Q+ P+
Sbjct: 221 AYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEK-PDTV 279
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMAYCVFV 178
T+ ++ A A G+ +HG + N+LI YA CG + A VF
Sbjct: 280 TMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFW 339
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++ K+V +WNS+I G G ++I ++R+M NVKPDE+T V VL+AC+
Sbjct: 340 LMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACS 392
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
DLV N +I YA GD+A A +F +DVVSWN+MISG+V G ++A+EL+ +M+
Sbjct: 211 DLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQ 270
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFG 239
KPD VTM+ +LSACA DL+ G
Sbjct: 271 AMGEKPDTVTMLSLLSACADSGDLDAG 297
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-------EVENVK 217
V G A A VF I D +N++I G A+ +Y M ++ ++
Sbjct: 53 GVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLR 112
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
PD+ T VL ACA E G V +H+ K G + D
Sbjct: 113 PDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESD 149
>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22150, chloroplastic; Flags: Precursor
gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 820
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 110/209 (52%), Gaps = 8/209 (3%)
Query: 54 DPYSASKLFTPCALSTFSSL---EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMI 110
D Y A+S ++ L E +R++FD + N+ WNT+I Y +D ++S +
Sbjct: 245 DEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIEL 304
Query: 111 FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYA 165
FL+ + + +E T A + Q +G+ HG + +VI NSL+ Y+
Sbjct: 305 FLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYS 364
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
CG + ++ VF+ + ++DVVSWN+MIS FV+ G ++ + L EM+ + K D +T+
Sbjct: 365 RCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTA 424
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+LSA + R+ E G + + + GI+ +
Sbjct: 425 LLSAASNLRNKEIGKQTHAFLIRQGIQFE 453
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 111/223 (49%), Gaps = 21/223 (9%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
G Q H + Q + +++ + D YS S L + F YA + DQ
Sbjct: 438 GKQTHAFLIRQGIQFEGMNS------YLIDMYSKSGLIR-ISQKLFEGSGYAER--DQA- 487
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
TWN++I Y+ + ++F++F +++ + PN T+ ++ A ++ +G+
Sbjct: 488 -----TWNSMISGYTQNGHTEKTFLVFRKMLEQNIR-PNAVTVASILPACSQIGSVDLGK 541
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+HG + ++ ++++L+ Y+ G + A +F +++ V++ +MI G+ + G
Sbjct: 542 QLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHG 601
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
E+AI L+ M+ +KPD +T V VLSAC+ ++ G+ +
Sbjct: 602 MGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKI 644
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIK 132
+ AR++FD IP+P WNT+I + ++ P ++ + + ++ +P+ + +T +K
Sbjct: 56 QLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLK 115
Query: 133 AAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYC--------VFVM 179
A A + G+A+H + V+ NSL++ Y C L C VF
Sbjct: 116 ACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSC--LNAPDCFEYDVVRKVFDN 173
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ +K+VV+WN++IS +V+ G +A + M VKP V+ V V A + R ++
Sbjct: 174 MRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIK 231
>gi|255570455|ref|XP_002526186.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534490|gb|EEF36190.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 7/171 (4%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
CA ++ A K+F + + + W T+I Y+ + + + M+F +++ N P+
Sbjct: 266 CAYFQSGYIDGATKLFSETREKDKVCWTTMIVGYTQNGKEENALMLFNEMLENVR--PDS 323
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
+T+ V+ + A+ GQ IHG+ +DDL++S SL+ Y CG + A+ VF M
Sbjct: 324 YTISSVVSSCAKLASLIHGQVIHGIALLMGIDDDLLVSTSLVDMYCKCGVTSDAWVVFSM 383
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+ + VVSWN+M+ G+ G +A+ LY +M EN++PD +T V VLSAC
Sbjct: 384 MPARSVVSWNAMLGGYARNGQDLEALALYEKMFQENIRPDNITFVGVLSAC 434
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 109/207 (52%), Gaps = 14/207 (6%)
Query: 36 QKQLKRIHAQMLSTD---FFFDPYSASKLFTPCALSTFSS----LEYARKMFDQIPQPNL 88
Q +L ++A++ + FD S +F+ A+ + + +E R +FD +P +
Sbjct: 62 QNRLLHLYAKLGKISHARYLFDKMSYRDIFSWNAMLSLYAKAGLVEDLRVVFDDMPSRDS 121
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
++NT+I ++ + ++ F+++ + P E+T V+ A + + R G+ IHG
Sbjct: 122 VSYNTVITGFAKNGRAGKAVEAFVRM-QTEGFKPTEYTHVSVLNACTQLLDLRKGKQIHG 180
Query: 149 M------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
++ I N+L YA C ++ A +F + K++VSWNSMISG+++ G FE
Sbjct: 181 RILTGNYLGGNVFIWNALTDMYAKCKEIDQARWLFDRLANKNMVSWNSMISGYLKNGQFE 240
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSA 229
I L+ EM+ +KPD+VT+ VL A
Sbjct: 241 IGINLFHEMQGLGLKPDQVTVSNVLCA 267
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 41/227 (18%)
Query: 33 LTNQKQLKRIHAQMLSTDFF----FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNL 88
L + ++ K+IH ++L+ ++ F + + ++ C ++ AR +FD++ N+
Sbjct: 169 LLDLRKGKQIHGRILTGNYLGGNVFIWNALTDMYAKC-----KEIDQARWLFDRLANKNM 223
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+WN++I Y + + F I + L F Q + G
Sbjct: 224 VSWNSMISGYLKNGQ----FEIGINL-------------------------FHEMQGL-G 253
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ D + +SN L ++ G + A +F +KD V W +MI G+ + G E A+ L+
Sbjct: 254 LKPDQVTVSNVLCAYFQ-SGYIDGATKLFSETREKDKVCWTTMIVGYTQNGKEENALMLF 312
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EM +ENV+PD T+ V+S+CAK L G + GI DL
Sbjct: 313 NEM-LENVRPDSYTISSVVSSCAKLASLIHGQVIHGIALLMGIDDDL 358
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ N+++ YA G + VF + +D VS+N++I+GF + G KA+E + M+
Sbjct: 89 DIFSWNAMLSLYAKAGLVEDLRVVFDDMPSRDSVSYNTVITGFAKNGRAGKAVEAFVRMQ 148
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
E KP E T V VL+AC + DL G + I
Sbjct: 149 TEGFKPTEYTHVSVLNACTQLLDLRKGKQIHGRI 182
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 123/226 (54%), Gaps = 8/226 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ L+++HA ++ + +KL + + T S+ YAR++F +P P+ + +++L++
Sbjct: 105 RNLQQVHAHIIVSGLHRSRSLLTKLIS--LVCTAGSITYARRLFPTVPNPDSFLFDSLLK 162
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
S I + + + +++++ N +T VIKA A R+G+ IH +
Sbjct: 163 VTSKFGFSIDTVLFYRRMLFSGAPQSN-YTFTSVIKACADLSALRLGKEIHSHVMVCGYG 221
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ + +LI YA D+ +A VF + ++ +++WNS+ISG+ + G +++I L+ M
Sbjct: 222 SDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLM 281
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+PD T+V +LS+C++ L+FG W+ + + NG +++
Sbjct: 282 MESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVL 327
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 117/214 (54%), Gaps = 8/214 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH+ ++ + D Y + L A + S ++ A+K+FD +PQ + WN+LI Y
Sbjct: 209 KEIHSHVMVCGYGSDMYVQAALIALYAKA--SDMKVAKKVFDAMPQRTIIAWNSLISGYD 266
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
+ P +S +F L+ S + P+ T+ ++ + ++ G +H F+ ++
Sbjct: 267 QNGLPQESIGLF-HLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNV 325
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ SLI+ Y CG+++ A VF + +++VV+W +MISG+ G+ +A+EL+ EM
Sbjct: 326 VLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAY 385
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+P+ +T V VLSACA ++ G V S +++
Sbjct: 386 GPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKE 419
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 33/186 (17%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++T C ++ AR++FD + + N+ TW +I Y Q+ +F ++ P
Sbjct: 334 MYTRCG-----NVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPR 388
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
PN T V+ A A G+ +D + +S+ Y + + C+ M
Sbjct: 389 -PNNITFVAVLSACAHS----------GLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMF 437
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
G+ G A + ++ + +P +L AC R+ + G+
Sbjct: 438 GR---------------AGLLNDAYQFIKKFIPK--EPGPAVWTSMLGACRMHRNFDLGV 480
Query: 241 WVSSHI 246
V+ H+
Sbjct: 481 KVAEHV 486
>gi|255549315|ref|XP_002515711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545148|gb|EEF46658.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 462
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 13/218 (5%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
R+H +++ T F D Y + L S F +++ AR +FD++P +L +WNT+I Y
Sbjct: 164 RVHCEVVITGFNLDIYVGNSLLA--MYSKFGNMKMARMVFDRMPVRDLTSWNTMISGYLK 221
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG--------MFED 152
+ +P + IF L+ ++ TL ++ A + G+ IHG +F
Sbjct: 222 NGKPREVLAIF-NLMKQIGLSVDDMTLIGLLCTCAELFAEKQGKEIHGYVVRNRHSVFNH 280
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
L+ NSLI Y C + A +F + KD VSWNSMISG+ +++ ++ M
Sbjct: 281 FLI--NSLIEMYCKCNSMVDARKLFEHMAWKDTVSWNSMISGYARNRDAFESLRVFCRMV 338
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+E KPD++T + VL AC + +EFG V S++ K G
Sbjct: 339 LEGTKPDKITFITVLGACEQITAMEFGRSVHSYLSKKG 376
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 35/244 (14%)
Query: 3 TLSTPVISIPRHPNPTTLT----VNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSA 58
+L+ P+ S+ TLT G Q H + +T S + + Y +
Sbjct: 34 SLAEPLTSLQCGTVLQTLTSIKSFTKGQQLHAYIIT-------------SGNLQNNTYLS 80
Query: 59 SKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
+KL + C L + A+ +FD I N + WN +IR Y+ + P+++ ++ Q +
Sbjct: 81 TKLAAFYASCGL-----MAAAQIIFDGIVLKNSFLWNFMIRGYACNGFPVKALFLY-QDM 134
Query: 116 YNSPYFPNEFTLPFVIKAAA--RPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCG 168
+ ++FT PFVIKA R V+F G +H F D+ + NSL+ Y+ G
Sbjct: 135 SSFGQKADKFTYPFVIKACGDLRDVEF--GWRVHCEVVITGFNLDIYVGNSLLAMYSKFG 192
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
++ MA VF + +D+ SWN+MISG+++ G + + ++ M+ + D++T++ +L
Sbjct: 193 NMKMARMVFDRMPVRDLTSWNTMISGYLKNGKPREVLAIFNLMKQIGLSVDDMTLIGLLC 252
Query: 229 ACAK 232
CA+
Sbjct: 253 TCAE 256
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 101/195 (51%), Gaps = 15/195 (7%)
Query: 36 QKQLKRIHAQMLSTDF-FFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
+KQ K IH ++ F+ + S +++ C +S+ ARK+F+ + + +W
Sbjct: 260 EKQGKEIHGYVVRNRHSVFNHFLINSLIEMYCKC-----NSMVDARKLFEHMAWKDTVSW 314
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
N++I Y+ + + +S +F ++V P++ T V+ A + G+++H
Sbjct: 315 NSMISGYARNRDAFESLRVFCRMVLEGTK-PDKITFITVLGACEQITAMEFGRSVHSYLS 373
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F + ++ +LI YA CG+LA A+ VF + +K++ W++MISG+ G +AI
Sbjct: 374 KKGFSATIFVATALIDMYAKCGNLACAHLVFEEMPEKNLFCWSAMISGYGIHGMGREAIS 433
Query: 207 LYREMEVENVKPDEV 221
L+ EM ++ PDE
Sbjct: 434 LFHEMIKNHIIPDEA 448
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 130 VIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V++ F GQ +H G +++ +S L FYA CG +A A +F I K
Sbjct: 47 VLQTLTSIKSFTKGQQLHAYIITSGNLQNNTYLSTKLAAFYASCGLMAAAQIIFDGIVLK 106
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+ WN MI G+ GF KA+ LY++M K D+ T V+ AC RD+EFG V
Sbjct: 107 NSFLWNFMIRGYACNGFPVKALFLYQDMSSFGQKADKFTYPFVIKACGDLRDVEFGWRVH 166
Query: 244 SHIEKNGIKMDL 255
+ G +D+
Sbjct: 167 CEVVITGFNLDI 178
>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
Length = 825
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 125/245 (51%), Gaps = 11/245 (4%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PNP LT + L++ K IH + T +P+ L A + +E
Sbjct: 249 PNPFVLT---SVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGY--IE 303
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR +F+ IP ++ W+ LI Y+ S + Q+F +FL+++ S PNEF+L V++A
Sbjct: 304 DARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMM-RSSVVPNEFSLSGVLQAC 362
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A +GQ IH + +E +L + N+L+ YA C ++ + +F + + VSWN
Sbjct: 363 ANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWN 422
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
++I G+ + GF E A+ +++EM +V +VT VL ACA ++ + + S IEK+
Sbjct: 423 TIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKS 482
Query: 250 GIKMD 254
D
Sbjct: 483 TFNND 487
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 10/182 (5%)
Query: 59 SKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
S+LF AL + ++E + ++F + N +WNT+I Y S + +F Q
Sbjct: 385 SELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVF-QE 443
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGD 169
+ + + T V++A A + IH + F +D ++ NSLI YA CG
Sbjct: 444 MRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGC 503
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
+ A VF I + DVVSWN++ISG+ G A+EL+ M + KP++VT V +LS
Sbjct: 504 IRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSV 563
Query: 230 CA 231
C
Sbjct: 564 CG 565
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 8/219 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IHA + + S L A S ++ +AR +FD I + TW ++ YS +
Sbjct: 172 IHACACKLGHDRNAFVGSSLID--AYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSEN 229
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----I 156
D P + F ++ PN F L V+KAA +G+ IHG L +
Sbjct: 230 DIPEDALNTFSKMRMAGAK-PNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHV 288
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+L+ YA CG + A VF +I DV+ W+ +IS + + E+A E++ M +V
Sbjct: 289 GGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSV 348
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
P+E ++ VL ACA L+ G + + + K G + +L
Sbjct: 349 VPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESEL 387
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 10/197 (5%)
Query: 40 KRIHAQMLSTDFF--FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+ +HA+++ D + A+ L + L AR++FD +P+ N+ ++ TL++
Sbjct: 67 RAVHARVVQRGGVAQLDTFCANVLLN--LYAKLGPLAAARRLFDGMPERNMVSFVTLVQG 124
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y+ ++ +F +L + N F L ++K + IH +
Sbjct: 125 YALRGGFEEAAGLFRRL-QREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDR 183
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ + +SLI Y++CG ++ A CVF I KD V+W +M+S + E E A+ + +M
Sbjct: 184 NAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMR 243
Query: 213 VENVKPDEVTMVVVLSA 229
+ KP+ + VL A
Sbjct: 244 MAGAKPNPFVLTSVLKA 260
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 141 RVGQAIH-------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
R G+A+H G+ + D +N L++ YA G LA A +F + ++++VS+ +++
Sbjct: 64 RAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQ 123
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G+ G FE+A L+R ++ E + + + +L
Sbjct: 124 GYALRGGFEEAAGLFRRLQREGHEVNHFVLTTIL 157
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 118/253 (46%), Gaps = 42/253 (16%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +HA + T D Y + L + + AR++FD +P +L +WNTL+ AY+
Sbjct: 94 KEVHAHVTKTGLDSDVYVGNALLH--LYGSTGQVTDARRLFDGMPHRDLASWNTLLGAYN 151
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
D ++ ++F +++Y + ++ V A + G+ +HG L
Sbjct: 152 --DNAVEVLVLFKRMMYEG-IGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPAL 208
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGK-------------------------------- 182
+SN+L+ Y CG++ A +FV +
Sbjct: 209 SLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSV 268
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
KD+VSWNSMI +V+ +KAIEL+R+ME E V+PDE TMV VL+ACA DL+ G
Sbjct: 269 KDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLA 328
Query: 243 SSHIEKNGIKMDL 255
I +N + DL
Sbjct: 329 HRFIIQNNPRQDL 341
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 6/168 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
S++ AR +FDQ+ +L +WN++I AY + P ++ +F ++ N P+E T+
Sbjct: 253 MGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKM-ENEMVEPDETTMVS 311
Query: 130 VIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A A + G+ H DL + +LI YA CG L A F + +D
Sbjct: 312 VLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRD 371
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
V +W + I G G +KA+ L+ EME + +KP++ T V VL AC++
Sbjct: 372 VFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQATFVSVLMACSR 419
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 21/196 (10%)
Query: 78 KMFDQIPQPNLYT--------WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
K+FDQ+ + T WN LIRA+S S PI + +I+ + FP+++T P
Sbjct: 20 KVFDQVLTQTITTAFIHATPTWNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPA 79
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
++KA R G+ +H + D+ + N+L+H Y G + A +F + +D
Sbjct: 80 MLKACWRMGSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRD 139
Query: 185 VVSWNSMISGFVEGGFFEKAIE---LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+ SWN+++ G + + A+E L++ M E + D ++MV+V SAC K EFG
Sbjct: 140 LASWNTLL-----GAYNDNAVEVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKE 194
Query: 242 VSSHIEKNGIKMDLTF 257
V ++ K GI+ L+
Sbjct: 195 VHGYVIKVGIRPALSL 210
>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 830
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 111/205 (54%), Gaps = 9/205 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IHAQ++ T++ P + L + S S E A +F I Q ++ +W+ ++ Y+
Sbjct: 377 QIHAQVIKTNYECTPTVGTALMV--SYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQ 434
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ-FRVGQAIHGM-----FEDDL 154
+ + + F+++ + PNEFT+ I A A P +G+ H + D L
Sbjct: 435 AGDCNGATNAFIKMTMHG-LKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDAL 493
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+S++L+ YA G + A CVF +D++SWNSM+SG+ + G+ +KA++++R+MEVE
Sbjct: 494 CVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVE 553
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
+ D +T + V+ CA +E G
Sbjct: 554 GIDMDGLTFLSVIMGCAHAGLVEEG 578
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 6/180 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
RK+F+ + + N+ TW +L+ Y + + +F ++ + PN FT V+ A
Sbjct: 110 GRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVW-PNPFTFSSVLSMVA 168
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+GQ +H + + NSL++ YA CG + A VF + +D+VSWN+
Sbjct: 169 SQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNT 228
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+++G V G +A++L+ + E T V++ CA + L + S + K+G
Sbjct: 229 LMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHG 288
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 15/198 (7%)
Query: 40 KRIHAQML---STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ +HAQ + F S ++ C L +E AR +F ++ ++ +WNTL+
Sbjct: 177 QHVHAQSIKFGCCSTVFVCNSLMNMYAKCGL-----VEEARVVFCRMETRDMVSWNTLMA 231
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ +++ +F +S E T VI A + + +H F
Sbjct: 232 GLVLNGRDLEALQLFHD-SRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFH 290
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMI-GKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ +L+ Y G L A VF+++ G ++VVSW +MI G ++ G A L+
Sbjct: 291 SYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSR 350
Query: 211 MEVENVKPDEVTMVVVLS 228
M + V P+++T +L+
Sbjct: 351 MREDGVAPNDLTYSTILT 368
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 15/215 (6%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H +N + +IHAQ+L + D + A KL A S L A +F+ +P PN++
Sbjct: 29 HKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIA--AFSLCRHLASAVNVFNHVPHPNVHL 86
Query: 91 WNTLIRAYS-SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+N++IRA++ ++ P F F Q+ N FP+ FT PF++KA P + + IH
Sbjct: 87 YNSIIRAHAHNTSHPSLPFNAFFQMQKNG-LFPDNFTYPFLLKACTGPSSLPLVRMIHAH 145
Query: 150 FE-----DDLVISNSLIHFYAVCGDLAM--AYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
E D+ + NSLI Y+ CG + A +F+ + ++DVV+WNSMI G V G E
Sbjct: 146 VEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELE 205
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
A +L+ EM + D V+ +L AK +++
Sbjct: 206 GACKLFDEMP----ERDMVSWNTMLDGYAKAGEMD 236
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 7/172 (4%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C S ++ AR +FD+ P N+ W T+I Y+ ++ ++ ++ + P++
Sbjct: 258 CGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKM-EEAGLRPDD 316
Query: 125 FTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFV- 178
L ++ A A +G+ IH F + N+ I YA CG L A+ VF
Sbjct: 317 GFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSG 376
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
M+ KKDVVSWNSMI GF G EKA+EL+ M E +PD T V +L AC
Sbjct: 377 MMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCAC 428
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 35/183 (19%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L LE A K+FD++P+ ++ +WNT++ Y+ + E ++F +F +
Sbjct: 197 GLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFER------------ 244
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
M + ++V ++++ Y+ GD+ MA +F K+V
Sbjct: 245 -----------------------MPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNV 281
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V W ++I+G+ E GF +A ELY +ME ++PD+ ++ +L+ACA+ L G + +
Sbjct: 282 VLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHAS 341
Query: 246 IEK 248
+ +
Sbjct: 342 MRR 344
>gi|302796918|ref|XP_002980220.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
gi|300151836|gb|EFJ18480.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
Length = 739
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 112/219 (51%), Gaps = 6/219 (2%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
++ +H +M++ D Y + L F L+ A FD+I N+++W +I A+
Sbjct: 53 VEELHCRMIAQGLDADTYLGNNLVR--VYGKFGGLDRAWAAFDRIAAKNVFSWTIVISAF 110
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLV 155
+ + ++ ++F Q+ NE TL V+ + G++IHG + D+V
Sbjct: 111 AQNGHHREALVLFRQM-EREGVKANEVTLAAVLGICSSIKDLAGGRSIHGRVIAAKKDVV 169
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
I N+L++ Y+ CG L A F + +DVVSW +MI+ E G + +A+E++ EM EN
Sbjct: 170 IGNALVNMYSKCGSLREARASFQEMVVRDVVSWTTMITALSEHGEWNEAVEIFWEMVSEN 229
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
V P+E++ + VL AC+ D + I G+++D
Sbjct: 230 VAPNEISCLAVLGACSNLGDRSQVRVIHEFIASGGLELD 268
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 111/221 (50%), Gaps = 16/221 (7%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQP-- 86
L ++ Q++ IH + S D KL L S AR++FD +
Sbjct: 247 LGDRSQVRVIHEFIASGGLELDK----KLVVANTLIHTYGRCGSPSDARRVFDSLQHSAR 302
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE-FTLPFVIKAAARPVQFRVGQA 145
N +W ++I AY+S+++ ++ +++ + V++A + +VG+
Sbjct: 303 NAVSWASMIAAYTSNEQAKAGVELYQEMIQREESKKMDPVAYLCVLEACSSLSALKVGRQ 362
Query: 146 IH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
+H F D+L ++ ++++ Y CG L A VF + +++++WNSM+ G+ + G
Sbjct: 363 VHEEIVAAGFGDELPLAGAIVNMYCKCGSLVEAREVFDGMKARNMIAWNSMMGGYTQHGH 422
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
++A++L+ ++ V PDE+T V +L+AC+ ++ G+W
Sbjct: 423 PKRALQLFELACLDGVLPDEITFVTILTACSHAGMVKPGVW 463
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 12/199 (6%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S SL AR F ++ ++ +W T+I A S E ++ IF ++V + PNE +
Sbjct: 179 SKCGSLREARASFQEMVVRDVVSWTTMITALSEHGEWNEAVEIFWEMV-SENVAPNEISC 237
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDD--LVISNSLIHFYAVCGDLAMAYCVF--V 178
V+ A + + IH G E D LV++N+LIH Y CG + A VF +
Sbjct: 238 LAVLGACSNLGDRSQVRVIHEFIASGGLELDKKLVVANTLIHTYGRCGSPSDARRVFDSL 297
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREM--EVENVKPDEVTMVVVLSACAKKRDL 236
++ VSW SMI+ + + +ELY+EM E+ K D V + VL AC+ L
Sbjct: 298 QHSARNAVSWASMIAAYTSNEQAKAGVELYQEMIQREESKKMDPVAYLCVLEACSSLSAL 357
Query: 237 EFGIWVSSHIEKNGIKMDL 255
+ G V I G +L
Sbjct: 358 KVGRQVHEEIVAAGFGDEL 376
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 89/216 (41%), Gaps = 35/216 (16%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFD-PYSAS--KLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L+ K +++H ++++ F + P + + ++ C SL AR++FD + N+
Sbjct: 354 LSALKVGRQVHEEIVAAGFGDELPLAGAIVNMYCKCG-----SLVEAREVFDGMKARNMI 408
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
WN+++ Y+ P ++ +F +L P+E T ++ A + + G G
Sbjct: 409 AWNSMMGGYTQHGHPKRALQLF-ELACLDGVLPDEITFVTILTACSHAGMVKPGVWHFGS 467
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
D + S+ H+ C+ M+G+ G+ + A L
Sbjct: 468 IRADFGMEPSVDHY----------VCMVDMLGR---------------AGWLDAAERLVE 502
Query: 210 EMEVENVKPDE-VTMVVVLSACAKKRDLEFGIWVSS 244
M + DE V + +L++C D++ +SS
Sbjct: 503 RMPAFSNPADEFVPWMALLASCKVHTDVKRAARISS 538
>gi|302142723|emb|CBI19926.3| unnamed protein product [Vitis vinifera]
Length = 486
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 124/249 (49%), Gaps = 13/249 (5%)
Query: 7 PVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCA 66
P + P T+L+ + H L + K +HAQ++ F + ++
Sbjct: 3 PFLKKAHGPLATSLSYYSNLIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNR-----C 57
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
L F LE AR +FD++P+ ++ +WNT+I Y S +F F ++ + P+ FT
Sbjct: 58 LDLFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEM-QKAGIRPSGFT 116
Query: 127 LPFVIKAAARPVQFRV--GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
+I +A + V G IH + E D+++++SL+ YA G + A F
Sbjct: 117 YSTLIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAK 176
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
IG +D++SWN+MI G G KA+E+++E+ + PDE+T+ VL AC ++ G
Sbjct: 177 IGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEG 236
Query: 240 IWVSSHIEK 248
+ + S +EK
Sbjct: 237 LSIFSSMEK 245
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 115/218 (52%), Gaps = 9/218 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IH ++ F D + L + ++ A K+FD++ + ++ +WN LI ++
Sbjct: 126 QIHTHIVRKGFIADALLGTTLLD--VYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQ 183
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLV 155
+P ++ +F ++ + + PNE ++ + A A+ F+ G+ IHG F+ +
Sbjct: 184 GSKPTEALSLFKRMEIDG-FKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQ 242
Query: 156 ISNSLIHFYAVCGDLAMAYCVF-VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N +I YA CG + AY VF M +KD+V+WN+MI F G KA+EL+ +M+
Sbjct: 243 VCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQS 302
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
V PD+V+ + VL AC +E G + + +E G+K
Sbjct: 303 GVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVK 340
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 114/215 (53%), Gaps = 9/215 (4%)
Query: 40 KRIHAQMLSTDFFFDPYS--ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
K++HA + +T F P S SKL ALS +L +A F QI P+ WN +IR
Sbjct: 21 KQLHAHLFTTGQFRLPISPARSKLLELYALS-LGNLSFAILTFSQIRTPSTNDWNAIIRG 79
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFED 152
+ S P +F + ++ S + T FV+KA AR + IH F
Sbjct: 80 FIQSPNPTNAFAWYKSMISKSRKV-DALTCSFVLKACARVLARLESIQIHTHIVRKGFIA 138
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D ++ +L+ YA G++ A VF + K+D+ SWN++ISGF +G +A+ L++ ME
Sbjct: 139 DALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRME 198
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
++ KP+E++++ LSACA+ D + G + +I+
Sbjct: 199 IDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIK 233
>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
Length = 506
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP- 119
+F C SL+ +R++FD ++ WN++I AYS S P ++ +F + +SP
Sbjct: 1 MFAKCG-----SLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPP 55
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAY 174
PN T V+ A + G+ +H F+ D NSL++ YA CG + A
Sbjct: 56 VEPNAITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAR 115
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
VF + ++ VVSW +IS +V G +A++LYR+M E V+P+ +T VLSAC+
Sbjct: 116 EVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLG 175
Query: 235 DLEFGIWVSSHIEKNGIKMDLT 256
LE G V + ++ G K DL
Sbjct: 176 ALEEGKAVHAQMKAAGYKPDLA 197
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 20/236 (8%)
Query: 12 PRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALS 68
P PN T T L +Q K +H QM+ F FD + + L + C
Sbjct: 55 PVEPNAITYTTVLAACSAVEAL---EQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCG-- 109
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
S+ AR++FD + Q + +W +I AY P ++ ++ ++ + PN T
Sbjct: 110 ---SITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKM-GSEGVEPNGITFA 165
Query: 129 FVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V+ A + G+A+H ++ DL ++N+L+ Y CG + A VF + +
Sbjct: 166 SVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIR 225
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+VVSW +MIS + E+AI+LY+ M +V P+ VT+ VLSACA + E G
Sbjct: 226 NVVSWTAMISSYAHHRHSEEAIQLYKAM---DVAPNAVTLASVLSACASLGNAEEG 278
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 21/212 (9%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ K +HAQM + + D A+ L + S++ ARK+FD++ N+ +W +I
Sbjct: 178 EEGKAVHAQMKAAGYKPDLAVANALVSL--YGKCGSVDSARKVFDRMKIRNVVSWTAMIS 235
Query: 97 AYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------ 147
+Y+ S+E IQ + PN TL V+ A A G+A+H
Sbjct: 236 SYAHHRHSEEAIQLYKAM-------DVAPNAVTLASVLSACASLGNAEEGRAVHEKLAST 288
Query: 148 --GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
G+ D+ V+ N+L++ YA CGD A +F + +D +SW+++I+ + + G +A+
Sbjct: 289 TTGLATDE-VLQNALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQHGRGGEAV 347
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
E+ R ME+E V+ VL+AC++ LE
Sbjct: 348 EMCRSMELEGVQASSFIYGTVLTACSQAGLLE 379
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN--VKPDE 220
+A CG L + VF KDV+ WNSMI + + G +AIEL++ M + V+P+
Sbjct: 1 MFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNA 60
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+T VL+AC+ LE G V + G + D E
Sbjct: 61 ITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAE 98
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 102/187 (54%), Gaps = 6/187 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A S LE RK+FD++ + ++ +W TL+ AYS S ++ F L+ + PN+F
Sbjct: 470 AYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFC-LMREEGFAPNQF 528
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T V+ + A G+ +HG+ + + I ++LI YA CG + A VF I
Sbjct: 529 TFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKI 588
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
D+VSW ++ISG+ + G E A++L+R ME+ +K + VT++ VL AC+ +E G+
Sbjct: 589 SNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGL 648
Query: 241 WVSSHIE 247
+ +E
Sbjct: 649 FYFQQME 655
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +HAQ++ F + ++ L A S+E + +F+ + + N +WN +I +
Sbjct: 241 KMVHAQIVMRGFATHIFVSTSLLNMYA--KLGSIEDSYWVFNMMTEHNQVSWNAMISGCT 298
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S+ +++F +F+++ N PN +TL V KA + V +G+ + E ++
Sbjct: 299 SNGLHLEAFDLFVRM-KNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNV 357
Query: 155 VISNSLIHFYAVCGDLAMAYCVF--VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++ +LI Y+ CG L A VF I WN+MISG+ + G ++A+ELY +M
Sbjct: 358 LVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMC 417
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
+ D T V +A A + L+FG V + K G+ +
Sbjct: 418 QNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDL 458
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 10/226 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCA--LSTFSSLEYARKMFDQIPQPNLYTWNTL 94
++ K +H +L ++F + LF A S S A +FD++PQ N+++W +
Sbjct: 135 REAKAVHGLVLKSNF--EDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVM 192
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
I + F F +++ NS P++F +I++ +G+ +H
Sbjct: 193 IVGSTEHGLFFDGFKFFCEML-NSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRG 251
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F + +S SL++ YA G + +Y VF M+ + + VSWN+MISG G +A +L+
Sbjct: 252 FATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFV 311
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M+ P+ T+V V A K D+ G V + + GI+ ++
Sbjct: 312 RMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNV 357
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 9/199 (4%)
Query: 68 STFSSLEYARKMFD-QIPQPNLYT-WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
S SL AR +FD + T WN +I YS S ++ +++Q+ N + +
Sbjct: 368 SKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGIT-SDLY 426
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFE----DDLVIS--NSLIHFYAVCGDLAMAYCVFVM 179
T V A A + G+ +HGM D +V+S N++ Y+ CG L VF
Sbjct: 427 TYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDR 486
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++D+VSW ++++ + + E+A+ + M E P++ T VL +CA LE+G
Sbjct: 487 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 546
Query: 240 IWVSSHIEKNGIKMDLTFE 258
V + K G+ + E
Sbjct: 547 RQVHGLLCKAGLDTEKCIE 565
>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 9/197 (4%)
Query: 39 LKRIHAQMLSTDFF-FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
LK++H ++L+ + ++P KL A L AR +FD+I N+ +N +IR+
Sbjct: 37 LKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGL--ARHIFDEITDKNVVFFNVMIRS 94
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y ++ + +++ + +Y + P+ +T P V+KA++R VG IHG +
Sbjct: 95 YVNNHLYKDALLVY-KTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDL 153
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+L + N LI Y C L A V I +DVVSWNSM+S + + G F A+EL REME
Sbjct: 154 NLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREME 213
Query: 213 VENVKPDEVTMVVVLSA 229
N+KP++ TM +L A
Sbjct: 214 ALNLKPNDCTMASLLPA 230
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 100/189 (52%), Gaps = 6/189 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+T ++ Y ++MF ++ + ++ +WN +I Y ++ P ++ +++ Q+ N P+ ++
Sbjct: 234 TTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANG-VEPDVVSI 292
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A +G+ +H E +L++ N+LI YA CG L A VF +
Sbjct: 293 VSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQF 352
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DVVSW S+IS + + G A+ ++ EM + PD + V VL+AC+ L+ G +
Sbjct: 353 RDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYY 412
Query: 243 SSHIEKNGI 251
+ + + GI
Sbjct: 413 FNLMAECGI 421
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%)
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
L+ YA CG+ +A +F I K+VV +N MI +V ++ A+ +Y+ M + PD
Sbjct: 60 LMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPD 119
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
T VL A ++ L G+ + + K G+ ++L
Sbjct: 120 MYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNL 155
>gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa]
gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa]
Length = 691
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 13/233 (5%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN 87
RH + KQ K H+ ++ T + + Y A L + A TF L A K+FD++P N
Sbjct: 11 RHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTF--LIDAYKLFDEMPVKN 68
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
+ TW T++ AY+S+ +P ++ ++ +++ + PN F V+KA + +G+ IH
Sbjct: 69 IVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIELGRLIH 128
Query: 148 GMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMI-GKKDVVSWNSMISGFVEGGFF 201
F D+V+ N+L+ Y CG L+ A VF I + + SWN+MISG+ + G
Sbjct: 129 KRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISGYFKEGLV 188
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E+A+ L+ +M NV T++ L+ R L+F + + GIK+D
Sbjct: 189 EEAVNLFNQMPDRNVVSWN-TIIAGLAENGSSRALQF----VCKMHREGIKLD 236
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 99/203 (48%), Gaps = 8/203 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L N + ++HA ++++ D S L A +++ A K+F ++P+ ++ W+
Sbjct: 357 LLNVRLGIQVHALIVTSGHELDYVVGSILVDLYA--KLGNMKDAFKLFHRLPKKDIVAWS 414
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
L+ + + + +F +V +++ + V+K + G+ +H
Sbjct: 415 GLLMGCAKMELNSLALSLFRDMVTFGVEV-DQYIVSNVLKVCSSLASIGTGKQVHAFCIK 473
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+E + V +LI Y+ CG++ +F + +DVV W +I G + G +A+E+
Sbjct: 474 RGYETEQVTITALIDMYSKCGEVEDGLVLFGCVADRDVVCWTGIIVGCAQNGRANEALEI 533
Query: 208 YREMEVENVKPDEVTMVVVLSAC 230
+R+M +KP+EVT + VL+AC
Sbjct: 534 FRQMVQSGLKPNEVTYLGVLTAC 556
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 14/222 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP------NLYTWNT 93
K+IH +L + ++ S L S + L+ A ++FDQ +L WN+
Sbjct: 257 KQIHCYVLKSGLESSCFAVSALVD--MYSNCNGLDDAIRLFDQYSGGTGSICDSLVLWNS 314
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--- 150
++ Y ++ + + Q +++S + +TL +K + R+G +H +
Sbjct: 315 MLSGYVVHEKNRAAVNMIAQ-IHHSGASVDSYTLSSALKVCINLLNVRLGIQVHALIVTS 373
Query: 151 --EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
E D V+ + L+ YA G++ A+ +F + KKD+V+W+ ++ G + A+ L+
Sbjct: 374 GHELDYVVGSILVDLYAKLGNMKDAFKLFHRLPKKDIVAWSGLLMGCAKMELNSLALSLF 433
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
R+M V+ D+ + VL C+ + G V + K G
Sbjct: 434 RDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQVHAFCIKRG 475
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I+ R + G++ H + ++ I+ +L+ YA L AY +F + K++
Sbjct: 10 IRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLFDEMPVKNI 69
Query: 186 VSWNSMISGFVEGGFFEKAIELY-REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
V+W +M+S + G +AI+LY R ++ ++ P+ VVL AC ++E G +
Sbjct: 70 VTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIELGRLIHK 129
Query: 245 HIEKNGIKMDLTF 257
+ + D+
Sbjct: 130 RFSRENLDYDIVL 142
>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 115/221 (52%), Gaps = 13/221 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
Q K +H ++ Y + L+ C + + AR +FD++ ++ +W +
Sbjct: 221 QGKWLHGYLIKCGIELGSYLVTALLDLYAKCGV-----VRDARSVFDELHGIDIVSWTAM 275
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----F 150
I Y+ + P ++ +FLQ PN+ T+ V + ++ + +G++IHG+
Sbjct: 276 IVGYTQNGCPEEALKLFLQ-KEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLG 334
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D +++NSL+ FYA C A VF I +DVV+WNS+IS F + G +A+EL+ +
Sbjct: 335 SRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQ 394
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
M + +V PD VT+V VLSACA L+ G ++ K G+
Sbjct: 395 MRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGL 435
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 7/223 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N L +HA ++ D ++KL + +F L+ AR +FD IP P+ +W +
Sbjct: 17 NINTLMEMHAYLVVQGLTRDLSCSTKLVS--LYGSFGRLDLARLVFDTIPHPDFLSWKVI 74
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---- 150
IR Y + E + + F + + V+KA + F G+ +H
Sbjct: 75 IRWYFLNSE-FRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG 133
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D + L+ YA CG++ + VF ++V SW+SMI+G+V+ + + L+
Sbjct: 134 NPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNR 193
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
M E ++ +++T+ +++ AC K L G W+ ++ K GI++
Sbjct: 194 MREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIEL 236
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 7/162 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +F+ I ++ WN++I A+S + ++ +F Q+ S P+ TL V+ A A
Sbjct: 357 ARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGS-VLPDAVTLVSVLSACA 415
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+VG + H G+ ++ + +L+ FYA CGD A +F + +K V+W+
Sbjct: 416 SLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWS 475
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+MISG+ G ++ ++ +M +KP+E +LSAC+
Sbjct: 476 AMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACS 517
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 104/215 (48%), Gaps = 19/215 (8%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYS-----ASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
N + +++H Q++ F +P S ++ C +E +R +FD+ N++
Sbjct: 118 NFDEGRKVHCQIVK---FGNPDSFVFTGLVDMYAKCG-----EIECSRSVFDENLDRNVF 169
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+W+++I Y ++ Q ++ + N+ TL ++ A + G+ +HG
Sbjct: 170 SWSSMIAGYVQNNLA-QDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGY 228
Query: 150 F-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
E + +L+ YA CG + A VF + D+VSW +MI G+ + G E+A
Sbjct: 229 LIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEA 288
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++L+ + E V P++VT+ V S+C++ +L G
Sbjct: 289 LKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLG 323
>gi|302790281|ref|XP_002976908.1| hypothetical protein SELMODRAFT_106129 [Selaginella moellendorffii]
gi|300155386|gb|EFJ22018.1| hypothetical protein SELMODRAFT_106129 [Selaginella moellendorffii]
Length = 704
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 20/260 (7%)
Query: 12 PRHPNPTTLTVNNGHQRHPHFL---TNQKQLKR---IHAQMLSTDFFFDPYSASK---LF 62
PR + ++ + H L N K L+ IH +++S DP A ++
Sbjct: 9 PRARAARSGEMDTATAAYIHLLRAYANSKDLQAGILIHDRIVSRGLDRDPTIADHVVYMY 68
Query: 63 TPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP 122
C S E A+ +F ++P P + +WN +I ++ E ++ F +L+ P
Sbjct: 69 VKCG-----SFETAKSVFQRMPDPGILSWNRIIAGHAQRHELEEAIATFRRLLLQG-VTP 122
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
T + A VG+ IH ++ L++S +LI YA CG L A VF
Sbjct: 123 GRITYVAALGACCGSRFLPVGKQIHSQIVAAGWDSSLIVSTALIDMYAACGSLRGAIRVF 182
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ K+DVV+W ++I+ F + G EKA YR M +E P VT + +L+A A++RD +
Sbjct: 183 QGMKKRDVVAWTAIIAAFAQYGHLEKAFLTYRGMLLEGFLPVLVTFLALLNALAEERDWD 242
Query: 238 FGIWVSSHIEKNGIKMDLTF 257
G W+ HI + ++ +L+
Sbjct: 243 RGRWIHRHITEMKLESELSM 262
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 10/185 (5%)
Query: 59 SKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
S+L AL T L+ AR++F +I QP+L +N L+ A++ + E + ++F ++
Sbjct: 258 SELSMAAALITMFGKCGDLKKARRVFRRIHQPDLEVYNALLAAHTENGEFWNALLLFRRM 317
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGD 169
+ P+ T+ + A RPV G+ IH E D+ ++N+LI+ Y+ CG
Sbjct: 318 QEDG-VAPDRETVLVALGACIRPVDLEHGKGIHVSVINHDLEKDIDVANALIYMYSKCGS 376
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L A +F + + +VSW ++++ +V+ G E+A+ +R+M +E + P V L A
Sbjct: 377 LEDAEWMFQRVERPSMVSWRTLLAAYVKHGRNEEALISFRKMLLEGISPGRGACVSALRA 436
Query: 230 CAKKR 234
C R
Sbjct: 437 CGSLR 441
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 16/225 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLI 95
K+IH+Q+++ + S L AL + SL A ++F + + ++ W +I
Sbjct: 144 KQIHSQIVAAGW------DSSLIVSTALIDMYAACGSLRGAIRVFQGMKKRDVVAWTAII 197
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MF 150
A++ ++F+ + ++ + P T ++ A A + G+ IH
Sbjct: 198 AAFAQYGHLEKAFLTYRGMLLEG-FLPVLVTFLALLNALAEERDWDRGRWIHRHITEMKL 256
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E +L ++ +LI + CGDL A VF I + D+ +N++++ E G F A+ L+R
Sbjct: 257 ESELSMAAALITMFGKCGDLKKARRVFRRIHQPDLEVYNALLAAHTENGEFWNALLLFRR 316
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M+ + V PD T++V L AC + DLE G + + + ++ D+
Sbjct: 317 MQEDGVAPDRETVLVALGACIRPVDLEHGKGIHVSVINHDLEKDI 361
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 110/231 (47%), Gaps = 20/231 (8%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFS 71
P+ T+ V G P + + K IH +++ D D A+ L ++ C
Sbjct: 324 PDRETVLVALGACIRP---VDLEHGKGIHVSVINHDLEKDIDVANALIYMYSKCG----- 375
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
SLE A MF ++ +P++ +W TL+ AY ++ + F +++ P +
Sbjct: 376 SLEDAEWMFQRVERPSMVSWRTLLAAYVKHGRNEEALISFRKMLLEG-ISPGRGACVSAL 434
Query: 132 KAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+A G+ IH G+ + V+ +++ Y C L A VF I + +
Sbjct: 435 RACGSLRLPGQGRLIHLIVRELGLESHNRVVC-TVVEMYGKCKCLEDARSVFEKIEQPNP 493
Query: 186 VSWNSMISGFVEGGFFEKAI-ELYREMEVENVKPDEVTMVVVLSACAKKRD 235
SWNS+++ +++ G E+A +L+R M ++ VKPD+ T +VLSAC + ++
Sbjct: 494 SSWNSIVAAYLDCGCMEEAFGQLFRRMLLDGVKPDKTTFTLVLSACMEAQE 544
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 85/193 (44%), Gaps = 11/193 (5%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE AR +F++I QPN +WN+++ AY ++F + + P++ T V+
Sbjct: 478 LEDARSVFEKIEQPNPSSWNSIVAAYLDCGCMEEAFGQLFRRMLLDGVKPDKTTFTLVLS 537
Query: 133 A---------AARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
A +A V F I E D I+ L+ Y C L AY VF
Sbjct: 538 ACMEAQEAPVSADQVAFIHSFIIECELETDATIAVFLLSAYGRCKALQEAYAVFSKNHHL 597
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK--KRDLEFGIW 241
V WN+MIS F E G + L++ M E V P+ T VL+A LE G
Sbjct: 598 GVAVWNAMISAFAENGVPKNGFLLFQRMAREGVMPNRSTFAGVLNAIGSVGASGLEQGKI 657
Query: 242 VSSHIEKNGIKMD 254
V S + GI++D
Sbjct: 658 VHSEAVQLGIELD 670
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 123/226 (54%), Gaps = 8/226 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ L+++HA ++ + +KL + + T S+ YAR++F +P P+ + +++L++
Sbjct: 41 RNLQQVHAHIIVSGLHRSRSLLTKLIS--LVCTAGSITYARRLFPTVPNPDSFLFDSLLK 98
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
S I + + + +++++ N +T VIKA A R+G+ IH +
Sbjct: 99 VTSKFGFSIDTVLFYRRMLFSGAPQSN-YTFTSVIKACADLSALRLGKEIHSHVMVCGYG 157
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ + +LI YA D+ +A VF + ++ +++WNS+ISG+ + G +++I L+ M
Sbjct: 158 SDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLM 217
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+PD T+V +LS+C++ L+FG W+ + + NG +++
Sbjct: 218 MESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVL 263
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 117/214 (54%), Gaps = 8/214 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH+ ++ + D Y + L A + S ++ A+K+FD +PQ + WN+LI Y
Sbjct: 145 KEIHSHVMVCGYGSDMYVQAALIALYAKA--SDMKVAKKVFDAMPQRTIIAWNSLISGYD 202
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
+ P +S +F L+ S + P+ T+ ++ + ++ G +H F+ ++
Sbjct: 203 QNGLPQESIGLF-HLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNV 261
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ SLI+ Y CG+++ A VF + +++VV+W +MISG+ G+ +A+EL+ EM
Sbjct: 262 VLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAY 321
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+P+ +T V VLSACA ++ G V S +++
Sbjct: 322 GPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKE 355
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 33/186 (17%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++T C ++ AR++FD + + N+ TW +I Y Q+ +F ++ P
Sbjct: 270 MYTRCG-----NVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPR 324
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
PN T V+ A A G+ +D + +S+ Y + + C+ M
Sbjct: 325 -PNNITFVAVLSACAHS----------GLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMF 373
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
G+ G A + ++ + +P +L AC R+ + G+
Sbjct: 374 GR---------------AGLLNDAYQFIKKFIPK--EPGPAVWTSMLGACRMHRNFDLGV 416
Query: 241 WVSSHI 246
V+ H+
Sbjct: 417 KVAEHV 422
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 114/227 (50%), Gaps = 14/227 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+++H +++ +P + L + C + AR +FD++P+ N+ TW LI
Sbjct: 168 QKVHMEIVEAGLELEPRVGTSLVGMYAKCG-----DISKARVIFDRLPEKNVVTWTLLIA 222
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
Y+ + + + L+ + + PN+ T +++ P G+ +H +
Sbjct: 223 GYAQQGQ-VDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYG 281
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+L + NSLI Y CG L A +F + +DVV+W +M++G+ + GF ++AI L+R M
Sbjct: 282 RELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRM 341
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ + +KPD++T VL++C+ L+ G + + G +D+ +
Sbjct: 342 QQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ 388
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 117/228 (51%), Gaps = 8/228 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + +Q + +HA +L + + Y + L + + SL AR++FD I N+ +W
Sbjct: 60 LRSLEQGREVHAAILKSGIQPNRYLENTLLS--MYAKCGSLTDARRVFDSIRDRNIVSWT 117
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----- 147
+I A+ + ++ +++F + + + + P++ T ++ A P ++GQ +H
Sbjct: 118 AMIEAFVAGNKNLEAFKCY-ETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVE 176
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
E + + SL+ YA CGD++ A +F + +K+VV+W +I+G+ + G + A+EL
Sbjct: 177 AGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALEL 236
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M+ V P+++T +L C LE G V +I ++G +L
Sbjct: 237 LETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGREL 284
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 101/200 (50%), Gaps = 15/200 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H ++ + + + + + L T LE ARK+F +P ++ TW ++ Y+
Sbjct: 269 KKVHRYIIQSGYGRELWVVNSLIT--MYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYA 326
Query: 100 S---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-----QAIHGMFE 151
DE I F Q P++ T V+ + + P + G Q +H +
Sbjct: 327 QLGFHDEAINLFRRMQQ----QGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYN 382
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG-FVEGGFFEKAIELYRE 210
D+ + ++L+ YA CG + A VF + +++VV+W ++I+G + G +A+E + +
Sbjct: 383 LDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQ 442
Query: 211 MEVENVKPDEVTMVVVLSAC 230
M+ + +KPD+VT VLSAC
Sbjct: 443 MKKQGIKPDKVTFTSVLSAC 462
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 130 VIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+++ AR G+ +H + + + N+L+ YA CG L A VF I ++
Sbjct: 53 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRN 112
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+VSW +MI FV G +A + Y M++ KPD+VT V +L+A L+ G V
Sbjct: 113 IVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHM 172
Query: 245 HIEKNGIKMD 254
I + G++++
Sbjct: 173 EIVEAGLELE 182
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 102/187 (54%), Gaps = 6/187 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A S LE RK+FD++ + ++ +W TL+ AYS S ++ F L+ + PN+F
Sbjct: 416 AYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFC-LMREEGFAPNQF 474
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T V+ + A G+ +HG+ + + I ++LI YA CG + A VF I
Sbjct: 475 TFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKI 534
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
D+VSW ++ISG+ + G E A++L+R ME+ +K + VT++ VL AC+ +E G+
Sbjct: 535 SNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGL 594
Query: 241 WVSSHIE 247
+ +E
Sbjct: 595 FYFQQME 601
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +HAQ++ F + ++ L A S+E + +F+ + + N +WN +I +
Sbjct: 187 KMVHAQIVMRGFATHIFVSTSLLNMYA--KLGSIEDSYWVFNMMTEHNQVSWNAMISGCT 244
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S+ +++F +F+++ N PN +TL V KA + V +G+ + E ++
Sbjct: 245 SNGLHLEAFDLFVRM-KNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNV 303
Query: 155 VISNSLIHFYAVCGDLAMAYCVF--VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++ +LI Y+ CG L A VF I WN+MISG+ + G ++A+ELY +M
Sbjct: 304 LVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMC 363
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
+ D T V +A A + L+FG V + K G+ +
Sbjct: 364 QNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDL 404
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 10/223 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCA--LSTFSSLEYARKMFDQIPQPNLYTWNTL 94
++ K +H +L ++F + LF A S S A +FD++PQ N+++W +
Sbjct: 81 REAKAVHGLVLKSNF--EDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVM 138
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
I + F F +++ NS P++F +I++ +G+ +H
Sbjct: 139 IVGSTEHGLFFDGFKFFCEML-NSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRG 197
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F + +S SL++ YA G + +Y VF M+ + + VSWN+MISG G +A +L+
Sbjct: 198 FATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFV 257
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
M+ P+ T+V V A K D+ G V + + GI+
Sbjct: 258 RMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIE 300
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 9/199 (4%)
Query: 68 STFSSLEYARKMFDQ--IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
S SL AR +FD I WN +I YS S ++ +++Q+ N + +
Sbjct: 314 SKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNG-ITSDLY 372
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFE----DDLVIS--NSLIHFYAVCGDLAMAYCVFVM 179
T V A A + G+ +HGM D +V+S N++ Y+ CG L VF
Sbjct: 373 TYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDR 432
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++D+VSW ++++ + + E+A+ + M E P++ T VL +CA LE+G
Sbjct: 433 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 492
Query: 240 IWVSSHIEKNGIKMDLTFE 258
V + K G+ + E
Sbjct: 493 RQVHGLLCKAGLDTEKCIE 511
>gi|125556645|gb|EAZ02251.1| hypothetical protein OsI_24351 [Oryza sativa Indica Group]
Length = 476
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 7/187 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SL ARK+FD+IP+P++ WNTL+ A + S P + + + PN ++ +
Sbjct: 55 GSLAAARKLFDEIPRPDVPLWNTLLSACARSGLPQHALVTASTMARAGSSRPNNVSVTIL 114
Query: 131 IKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-KD 184
+ A AR G+ IHG + DL + N+L+ Y CG L A VF IG K
Sbjct: 115 LSACARLRSLVHGREIHGYAVRNLAALDLPLLNALVSMYGRCGRLVNARMVFDSIGSMKS 174
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK-KRDLEFGIWVS 243
VVSW MI+ E G +A++++ +M + VK DEVT++ V+SAC E G W
Sbjct: 175 VVSWTCMINACCENGKPAEALQVFEQMRLAGVKVDEVTLLAVISACTMLDCRSELGEWEE 234
Query: 244 SHIEKNG 250
+ +NG
Sbjct: 235 EYAHENG 241
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 76 ARKMFDQI-PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR +FD I ++ +W +I A + +P ++ +F Q+ +E TL VI A
Sbjct: 162 ARMVFDSIGSMKSVVSWTCMINACCENGKPAEALQVFEQMRLAGVKV-DEVTLLAVISAC 220
Query: 135 AR-PVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ +G+ A F ++ ++N+LIH + G + + +F I + VVSW
Sbjct: 221 TMLDCRSELGEWEEEYAHENGFLENTRVANALIHMHGKMGRVRRSCEIFDSITVRTVVSW 280
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++I G A+ + +M + +PDE+ + V++AC
Sbjct: 281 TAIIQALAVHGHGVAALVRFSQMLRQGFQPDELVFLSVINACG 323
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
G+ L + ++L+ YA G LA A +F I + DV WN+++S G + A+
Sbjct: 35 GVLPSSLHLCSALVKSYAASGSLAAARKLFDEIPRPDVPLWNTLLSACARSGLPQHALVT 94
Query: 208 YREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M + +P+ V++ ++LSACA+ R L G + + +N +DL
Sbjct: 95 ASTMARAGSSRPNNVSVTILLSACARLRSLVHGREIHGYAVRNLAALDL 143
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 107/186 (57%), Gaps = 6/186 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFM-IFLQLVYNSPYFPNEFTLP 128
+E A+ +FDQ+PQ +L +WN+L+ YS ++ +F +++ P+ T+
Sbjct: 312 LGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMV 371
Query: 129 FVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
+I AA + G+ +HG+ E D +S++LI Y CG + A+ VF +K
Sbjct: 372 SLISGAANNGELSHGRWVHGLMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEK 431
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
DV W SMI+GF G+ ++A++L++ M+ E+V P++VT++ VL+AC+ +E G+ V
Sbjct: 432 DVPLWTSMITGFAFHGYGQQALQLFKRMQEEDVTPNKVTLLAVLTACSHSGLVEEGLHVF 491
Query: 244 SHIEKN 249
H+++
Sbjct: 492 YHMKEK 497
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 41/213 (19%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
SL +A K+F +PQP++ ++N +I Y+ +++ ++ ++V + P+E+TL
Sbjct: 178 LGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGIE-PDEYTLLG 236
Query: 130 VIKAAARPVQFRVGQAIHGMFE-------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ R+G+ +HG E +L++ N+L+ Y C + +A F + K
Sbjct: 237 LLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILRNALLDMYFKCKESGLAKRAFDALKK 296
Query: 183 KDVVSWNSMISGFVEGGFFEKA--------------------------------IELYRE 210
KD+ SWN+M+ GFV G E A EL+ E
Sbjct: 297 KDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKGCDQRAVRELFYE 356
Query: 211 ME-VENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
M VE VKPD VTMV ++S A +L G WV
Sbjct: 357 MLIVEKVKPDRVTMVSLISGAANNGELSHGRWV 389
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 7/221 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF-DQIPQPNLYTWN 92
+++ Q K++ AQ++ + + S+L A++ +L+ A+ +F D P PN++ +N
Sbjct: 44 SSRNQFKQVLAQIMRFNLIGVTFPMSRLIFFSAITYPENLDLAKLLFLDFTPNPNVFVYN 103
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA---RPVQFRVGQAIHGM 149
T+I A SSS + F ++ ++ P+ T ++KA++ Q + G
Sbjct: 104 TMISAVSSSKN--ECFGLYSSMI-RYRVSPDRQTFLHLMKASSFLSEVKQIHCHIIVSGC 160
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ NSL+ FY G L A VF ++ + DV S+N MI G+ + GF +A+ELY
Sbjct: 161 LSLGNYLWNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYY 220
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+M + ++PDE T++ +L C D+ G V IE+ G
Sbjct: 221 KMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRG 261
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 132/266 (49%), Gaps = 37/266 (13%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLT--------NQKQLKRIHAQMLSTDFFFDPYSASK-- 60
I +H T+ N H P FL + K L++IH Q F +S K
Sbjct: 3 ISKHKIFKTINTNTNHS--PIFLLLSLLKQCPSTKTLQQIHTQ-------FTIHSIHKPN 53
Query: 61 --LFTPCALSTFSSLEYARKMFDQI-PQPNLYTWNTLIRAYSSS--DEPIQSFMIFLQLV 115
L +L F+ Y+ +F I P PN Y +N ++RA +++ D P+ +
Sbjct: 54 HLLSQSISLKDFT---YSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKT 110
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGD 169
N PN FT PFV A A + R+ + H G+ D + NS++ Y CG+
Sbjct: 111 LNIS--PNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTV-NSMVTMYFRCGE 167
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY-REMEVENVKPDEVTMVVVLS 228
+A VF I +KD+VSWNS++SG+ + GF +A+E++ R E +PDE+++V VL
Sbjct: 168 NGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLG 227
Query: 229 ACAKKRDLEFGIWVSSHIEKNGIKMD 254
AC + DLE G WV + + G+K++
Sbjct: 228 ACGELGDLELGRWVEGFVVERGMKVN 253
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 100/185 (54%), Gaps = 5/185 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD+I + +L +WN+L+ Y+ ++ +F +L S + P+E +L V+ A
Sbjct: 171 ARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACG 230
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ + G + + I ++LI Y+ CG+L + +F + +D ++WN+
Sbjct: 231 ELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNA 290
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
IS + + G ++AI L+ M+ V P++VT+ VLSACA L+ G + + G
Sbjct: 291 AISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRG 350
Query: 251 IKMDL 255
++ D+
Sbjct: 351 LQHDI 355
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S L +R++FD +P + TWN I AY+ + ++ +F + N PN+ TL
Sbjct: 265 SKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENG-VDPNKVTL 323
Query: 128 PFVIKAAARPVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A +G+ A H + D+ ++ +LI YA CG L A VF + +
Sbjct: 324 TAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPR 383
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVE--NVKPDEVTMVVVLSAC 230
K+ SWN+MIS G ++A+ L+ M E + +P+++T V +LSAC
Sbjct: 384 KNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSAC 433
>gi|296083914|emb|CBI24302.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 112/212 (52%), Gaps = 12/212 (5%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IHA+ + + + D + + L + ++ +A+ +F I P++ +W ++I S
Sbjct: 98 IHARAIKSGHYSDIFIQNTLLHSYVVE--NNFVFAKSVFKSISSPDVVSWTSIISGLSKC 155
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVI 156
++ FL + PN TL V+ A R G+AIHG M D++++
Sbjct: 156 GFDEEAIGEFLSM----DVKPNTSTLVSVVSACCGLRAVRFGKAIHGYSLRSMDGDNIIL 211
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVEN 215
N+L+ FY CG L A +F+ + ++DV+SW +M+ G +GG E+A+E+++ M +
Sbjct: 212 DNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGE 271
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
P+EVT+V VL+AC+ L G WV S+I
Sbjct: 272 AVPNEVTLVNVLTACSSLSALNLGRWVHSYIS 303
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 6/174 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L A+ +F ++ + ++ +W T++ + ++ +F +V PNE TL V+
Sbjct: 225 LVSAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLT 284
Query: 133 AAARPVQFRVGQAIHGMFED--DLVI----SNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A + +G+ +H DLV+ N+LI+ YA C D+ MA VF + KD++
Sbjct: 285 ACSSLSALNLGRWVHSYISTRYDLVVDGNVGNALINMYAKCSDMYMAVRVFNELTHKDMI 344
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
SW+++I G G A++ + M V V PD+VT + +LSAC+ +E G+
Sbjct: 345 SWSTIIGGMAMNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSACSHAGLVEQGL 398
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 9/217 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+R+H++++ D Y + L A F + AR +FD++ + +L +WNT+I Y+
Sbjct: 181 RRVHSEVVVCGLESDIYVGNSLLAMYA--KFGDMGTARMVFDRMAERDLTSWNTMISGYA 238
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV---- 155
+ + +F++F L+ + F + TL ++ A A + G+ IHG + +
Sbjct: 239 KNADSGTAFLVF-DLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYN 297
Query: 156 --ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+NSLI Y C + A +F + KD VSWNSMI G+ G +++ L+R M +
Sbjct: 298 KFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMAL 357
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ PD+VT + VL AC + L +G+ + S++ K G
Sbjct: 358 DGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKG 394
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 15/224 (6%)
Query: 37 KQLKRIHAQMLSTDFF-FDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
KQ +++HA M+S + Y +KL + C L + A +FD I N + WN
Sbjct: 76 KQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGL-----MSQAEVIFDGIVLKNSFLWN 130
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---- 148
+IR Y+S+ P++S +++ +++ N FT PFV+KA + +G+ +H
Sbjct: 131 FMIRGYASNGLPMKSLVLYREMLCFGQRADN-FTYPFVLKACGDLLLVEIGRRVHSEVVV 189
Query: 149 -MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
E D+ + NSL+ YA GD+ A VF + ++D+ SWN+MISG+ + A +
Sbjct: 190 CGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLV 249
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ M + D T++ +LSACA + ++ G + + +N I
Sbjct: 250 FDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSI 293
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++F+++ + +WN++I Y+ + + +S +F ++ + P++ T V+ A
Sbjct: 317 ARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGS-GPDQVTFIAVLGACD 375
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ R G +IH F+ + ++ +L+ Y+ CG LA + VF + K +VSW++
Sbjct: 376 QIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSA 435
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
M++G+ G +AI + M+ +V PD +LSAC+
Sbjct: 436 MVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACS 476
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 140 FRVGQAIHG------MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
F+ GQ +H + E++ ++ L FYA CG ++ A +F I K+ WN MI
Sbjct: 75 FKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIR 134
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
G+ G K++ LYREM + D T VL AC +E G V S + G++
Sbjct: 135 GYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLES 194
Query: 254 DL 255
D+
Sbjct: 195 DI 196
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 10/197 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IHA+ D + L S S++ AR++FD++P+ ++ +W TL+ Y+
Sbjct: 351 KEIHARAAKDGLVSDVRFGNALIN--MYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYA 408
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDD 153
D+ ++SF F Q++ N+ T V+KA + PV + G+ IH G+ D
Sbjct: 409 DCDQVVESFTTFKQMLQQGVK-ANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLAD- 466
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L ++N+L+ Y CG + A VF + +DVV+WN++I G + G +A++ Y M+
Sbjct: 467 LAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKS 526
Query: 214 ENVKPDEVTMVVVLSAC 230
E ++P+ T V VLSAC
Sbjct: 527 EGMRPNAATFVNVLSAC 543
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 14/215 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++H +L + Y + KL+ C S+ AR++FD+ ++ +WN +I
Sbjct: 48 KQVHEHILRCGVKPNVYITNTLLKLYAHCG-----SVNEARQLFDKFSNKSVVSWNVMIS 102
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
Y+ ++F +F L+ P++FT ++ A + P G+ IH
Sbjct: 103 GYAHRGLAQEAFNLF-TLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLA 161
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+D + N+LI YA CG + A VF + +D VSW ++ + E G+ E++++ Y M
Sbjct: 162 NDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAM 221
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
E V+P +T + VLSAC LE G + +HI
Sbjct: 222 LQERVRPSRITYMNVLSACGSLAALEKGKQIHAHI 256
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 14/226 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ IH +++ D + L + + S+ AR++FD + + +W TL AY+
Sbjct: 149 REIHVRVMEAGLANDTTVGNALIS--MYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 206
Query: 100 SS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
S +E ++++ LQ P+ T V+ A G+ IH +
Sbjct: 207 ESGYGEESLKTYHAMLQ----ERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYH 262
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ +S +L Y CG A VF + +DV++WN+MI GFV+ G E+A + M
Sbjct: 263 SDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRM 322
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
E V PD T VLSACA+ L G + + K+G+ D+ F
Sbjct: 323 LEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRF 368
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 116/225 (51%), Gaps = 14/225 (6%)
Query: 40 KRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+IHA ++ +++ D + +K++ C + + AR++F+ + ++ WNT+IR
Sbjct: 250 KQIHAHIVESEYHSDVRVSTALTKMYMKCG-----AFKDAREVFECLSYRDVIAWNTMIR 304
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
+ S + ++ F +++ P+ T V+ A ARP G+ IH D ++
Sbjct: 305 GFVDSGQLEEAHGTFHRML-EEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLV 363
Query: 157 S-----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
S N+LI+ Y+ G + A VF + K+DVVSW +++ + + ++ +++M
Sbjct: 364 SDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQM 423
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ VK +++T + VL AC+ L++G + + + K G+ DL
Sbjct: 424 LQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLA 468
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 130 VIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
++++ + VG+ +H + ++ I+N+L+ YA CG + A +F K
Sbjct: 34 LLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKS 93
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VVSWN MISG+ G ++A L+ M+ E ++PD+ T V +LSAC+ L +G +
Sbjct: 94 VVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHV 153
Query: 245 HIEKNGIKMDLT 256
+ + G+ D T
Sbjct: 154 RVMEAGLANDTT 165
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 132/266 (49%), Gaps = 37/266 (13%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLT--------NQKQLKRIHAQMLSTDFFFDPYSASK-- 60
I +H T+ N H P FL + K L++IH Q F +S K
Sbjct: 3 ISKHKIFKTINTNTNHS--PIFLLLSLLKQCPSTKTLQQIHTQ-------FTIHSIHKPN 53
Query: 61 --LFTPCALSTFSSLEYARKMFDQI-PQPNLYTWNTLIRAYSSS--DEPIQSFMIFLQLV 115
L +L F+ Y+ +F I P PN Y +N ++RA +++ D P+ +
Sbjct: 54 HLLSQSISLKDFT---YSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKT 110
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGD 169
N PN FT PFV A A + R+ + H G+ D + NS++ Y CG+
Sbjct: 111 LNIS--PNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTV-NSMVTMYFRCGE 167
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY-REMEVENVKPDEVTMVVVLS 228
+A VF I +KD+VSWNS++SG+ + GF +A+E++ R E +PDE+++V VL
Sbjct: 168 NGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLG 227
Query: 229 ACAKKRDLEFGIWVSSHIEKNGIKMD 254
AC + DLE G WV + + G+K++
Sbjct: 228 ACGELGDLELGRWVEGFVVERGMKVN 253
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 100/185 (54%), Gaps = 5/185 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD+I + +L +WN+L+ Y+ ++ +F +L S + P+E +L V+ A
Sbjct: 171 ARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACG 230
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ + G + + I ++LI Y+ CG+L + +F + +D ++WN+
Sbjct: 231 ELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNA 290
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
IS + + G ++AI L+ M+ V P++VT+ VLSACA L+ G + + G
Sbjct: 291 AISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRG 350
Query: 251 IKMDL 255
++ D+
Sbjct: 351 LQHDI 355
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S L +R++FD +P + TWN I AY+ + ++ +F + N PN+ TL
Sbjct: 265 SKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENG-VDPNKVTL 323
Query: 128 PFVIKAAARPVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A +G+ A H + D+ ++ +LI YA CG L A VF + +
Sbjct: 324 TAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPR 383
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVE--NVKPDEVTMVVVLSAC 230
K+ SWN+MIS G ++A+ L+ M E + +P+++T V +LSAC
Sbjct: 384 KNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSAC 433
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+ H +L + + Y+A+ L A F+ ARK FD + +P+L W ++I Y
Sbjct: 334 KQTHGYLLKSGYETQIYTATALVDMYAKFGFTG--DARKGFDFLLEPDLVLWTSIIAGYV 391
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ + ++ ++ ++ PNE T+ V+KA + G+ IH +L
Sbjct: 392 QNGKNEEALSMYGRMQMR-KILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPEL 450
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L YA CG L +F + ++D+VSWN+MISG + G +A+EL+ EM +E
Sbjct: 451 SIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLE 510
Query: 215 NVKPDEVTMVVVLSACA 231
KPD +T V VLSAC+
Sbjct: 511 GTKPDHITFVTVLSACS 527
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 115/234 (49%), Gaps = 11/234 (4%)
Query: 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
P F+ + KQ+ + + +F + ++ C +L Y+ +F+ N
Sbjct: 226 PEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCG-----NLNYSLMLFEMCSDKNAI 280
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TW+ LI YS + + ++ +F ++ Y + + P+EFTL V+KA + G+ HG
Sbjct: 281 TWSALITGYSQAGDSHKALKLFSKMHY-AGFVPSEFTLVGVLKACSDVAAIEEGKQTHGY 339
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+E + + +L+ YA G A F + + D+V W S+I+G+V+ G E+A
Sbjct: 340 LLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEA 399
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ +Y M++ + P+E+TM VL AC+ LE G + + K G+ +L+
Sbjct: 400 LSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIR 453
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 10/182 (5%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKA 133
ARK+FD++P+ NL +W T+I Y+S ++ +F ++LV + NEF V+ A
Sbjct: 166 ARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNL---NEFVFTSVLSA 222
Query: 134 AARPVQFRVGQAIHGMFEDDLVIS-----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
P G+ +H + + V+ N+L+ YA CG+L + +F M K+ ++W
Sbjct: 223 LVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITW 282
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+++I+G+ + G KA++L+ +M P E T+V VL AC+ +E G ++ K
Sbjct: 283 SALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLK 342
Query: 249 NG 250
+G
Sbjct: 343 SG 344
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 15/230 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLY 89
+QK LK+ Q+L PY +S + L F L A+ +F+ + N+
Sbjct: 18 ADQKSLKK--GQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVV 75
Query: 90 TWNTLIRAYSSSDEPIQSFMI--FLQLVYNSPYFPNEFTLPFVIKAAARPV--QFRVGQ- 144
++N LI S + +F++ F +++ N+ P+ T P V AAA + F Q
Sbjct: 76 SYNCLIHGLSHNGSKGSNFVLELFRRMIANN-ILPDAHTFPGVFTAAALNLGCNFDARQV 134
Query: 145 ---AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
I DD+ + +SL++FY G + A +F + ++++VSW +MISG+
Sbjct: 135 HVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMA 194
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
++A+ ++ M + +E VLSA ++ G V + KNG+
Sbjct: 195 KEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGV 244
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 6/173 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L A+++F+ +P+ N+ +W TLI +S + + + + +++ PNE+T+ V+
Sbjct: 243 LNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEML-EKGLKPNEYTIAAVLS 301
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A ++ G IHG D D I +L+ YA CG+L A VF + KD++S
Sbjct: 302 ACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILS 361
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
W +MI G+ G F +AI+ +R+M KPDEV + VL+AC +++ G+
Sbjct: 362 WTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGL 414
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 126/299 (42%), Gaps = 83/299 (27%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H + L+ +HAQ+L +A C+ S S +Y+ +F + N +
Sbjct: 37 HACKDTASLRHVHAQILRRGVLSSRVAAQ--LVSCS-SLLKSPDYSLSIFRNSEERNPFV 93
Query: 91 WNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR-VGQAI 146
N LIR + + + ++ F++ L+L P+ T PFV+K+ ++ + FR +G+A+
Sbjct: 94 LNALIRGLTENARFESSVRHFILMLRLGVK----PDRLTFPFVLKSNSK-LGFRWLGRAL 148
Query: 147 HG--------------------------------MFEDD--------LVISNSLIHFYAV 166
H +FE+ ++I N LI+ Y
Sbjct: 149 HAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCR 208
Query: 167 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF-------------------------- 200
D+ MA +F + +++ SW+++I G+V+ G
Sbjct: 209 AKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGF 268
Query: 201 -----FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+E AI Y EM + +KP+E T+ VLSAC+K L GI + +I NGIK+D
Sbjct: 269 SQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 69/259 (26%)
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
+L C + + YARK+FD IP+P+L+ N ++R Y+ + P +F ++ ++ S
Sbjct: 36 ELLLSCVATFRGRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASR 95
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMA- 173
P+ FT ++++A A R G+ +HG F D + N+LI+ +A CGDL +A
Sbjct: 96 LRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVAS 155
Query: 174 ------------------------------------------YCVFVMIG---------- 181
C VM+G
Sbjct: 156 VLLDEAGEGDVVAWSAVIAGHAARGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMEN 215
Query: 182 ---------KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
+KDVVSWN++I+G+ G + A+E++ EM PDE T+V +LS CA
Sbjct: 216 ARELFDRAPEKDVVSWNTIITGYAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCAN 275
Query: 233 KRDLEFGIWVSS--HIEKN 249
L+ G + H+E+
Sbjct: 276 TGLLDAGRMIHHQLHLERR 294
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 20/205 (9%)
Query: 54 DPYSASKLFTPC-------------ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
D +A K+F C A + +E AR++FD+ P+ ++ +WNT+I Y++
Sbjct: 181 DMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAA 240
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD------L 154
+ +F ++ + + P+E T+ ++ A G+ IH + +
Sbjct: 241 QGMLKHALEVFDEM-RAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISI 299
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ N+L+ YA CGDL A F + DV +WNS+I G G E+++ +++M +
Sbjct: 300 VVGNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEK 359
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
+ P+E++ + VL AC+ +E G
Sbjct: 360 RIHPNEISFLCVLGACSHAGLVEDG 384
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 124/256 (48%), Gaps = 40/256 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q+K++HA++++T P +KL + S F+ + YA +FD PQP+L+ +NT+I+
Sbjct: 15 RQIKQVHARLITTGLILHPIPTNKLLKQLS-SIFAPISYAHMVFDHFPQPDLFLYNTIIK 73
Query: 97 AYS-SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV------QFRVGQAIHGM 149
+ S+ SF F L+ PN+++ F K V Q RV AI
Sbjct: 74 VLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRV-HAIKLG 132
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN-------------------- 189
E++L ++N+LI Y + A VF +D+ SWN
Sbjct: 133 LENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFD 192
Query: 190 -----------SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+MISG ++ G+F +A++++ M + + P+E T+ L+ACA L+
Sbjct: 193 EMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQ 252
Query: 239 GIWVSSHIEKNGIKMD 254
G W+ +I+KN I+M+
Sbjct: 253 GRWMHVYIKKNNIQMN 268
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 102/196 (52%), Gaps = 16/196 (8%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D YS + + + + ++ AR++FD++P+ ++ +W T+I S + FM L
Sbjct: 167 DMYSWNIMLS--GYARLGKMDEARQLFDEMPEKDVVSWTTMI----SGCLQVGYFMEALD 220
Query: 114 LVYN---SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYA 165
+ +N PNE+TL + A A V G+ +H + + + N LI YA
Sbjct: 221 IFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYA 280
Query: 166 VCGDLAMAYCVFVMIG--KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
CG+L A +F K+ V WN+MI GF G ++AIE++ +M++E V P++VT
Sbjct: 281 KCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTF 340
Query: 224 VVVLSACAKKRDLEFG 239
V +L+AC+ +E G
Sbjct: 341 VALLNACSHGNRVEEG 356
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++HA++ ++ A+KL S +SL A +FD+IP+ NL+ WN LIRAY+
Sbjct: 78 KQLHARLCQLGIAYNLDLATKLVN--FYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYA 135
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
+ + ++ Q++ P+ FTLPFV+KA + G+ IH +E D+
Sbjct: 136 WNGPHETAISLYHQML-EYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDV 194
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +L+ YA CG + A VF I +D V WNSM++ + + G ++++ L EM +
Sbjct: 195 FVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAK 254
Query: 215 NVKPDEVTMVVVLSACA 231
V+P E T+V V+S+ A
Sbjct: 255 GVRPTEATLVTVISSSA 271
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FD+I + WN+++ AY+ + P +S + ++ P E TL VI ++A
Sbjct: 213 ARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVR-PTEATLVTVISSSA 271
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ IHG F+ + + +LI YA CG + +A +F + +K VVSWN+
Sbjct: 272 DIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNA 331
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+I+G+ G +A++L+ M ++ +PD +T V L+AC++ R L+ G
Sbjct: 332 IITGYAMHGLAVEALDLFERM-MKEAQPDHITFVGALAACSRGRLLDEG 379
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+L ++ L++FY+VC L A+ +F I K ++ WN +I + G E AI LY +M
Sbjct: 92 NLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQML 151
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+KPD T+ VL AC+ + G + + ++G + D+
Sbjct: 152 EYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDV 194
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 113/219 (51%), Gaps = 8/219 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+HAQ + + Y S L A +E A+K+FD + + NL WN ++ Y+ +
Sbjct: 371 VHAQAIKQGLNSNVYVGSSLINMYA--KCEKMEAAKKVFDALDERNLVLWNAMLGGYAQN 428
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
+ +F ++ ++P+EFT ++ A A +G+ +H FE +L +
Sbjct: 429 GYASKVMKLFSEM-RGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFV 487
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+L+ YA CG L A F I +D VSWN++I G+V+ ++A ++R M ++ +
Sbjct: 488 ENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGI 547
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
PDEV++ +LS CA + LE G V + K+G++ L
Sbjct: 548 APDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCL 586
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 20/217 (9%)
Query: 28 RHPHFLTNQK------QLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARK 78
RHP T Q+ K IHAQ L F S L+ C ++E+A K
Sbjct: 83 RHPFDETPQRLAQASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCG-----NVEFAAK 137
Query: 79 MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138
F+Q+ + ++ WN+++ YS Q F L N PN+FT V+ + AR V
Sbjct: 138 AFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSL-QNCGVSPNQFTYAIVLSSCARLV 196
Query: 139 QFRVGQAIH-GM----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
+G+ +H G+ FE + SLI Y+ CG L A +F + D VSW +MI+
Sbjct: 197 DIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIA 256
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
G+V+ G E+A++++ +M+ + PD+V V V++AC
Sbjct: 257 GYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITAC 293
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+++H+ ++ +F ++ + + L + C +LE AR+ F+ I + +WN +I
Sbjct: 470 RQLHSFIIKHNFEYNLFVENTLVDMYAKCG-----ALEEARQQFEFIRNRDNVSWNAIIV 524
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
Y ++ ++F +F +++ + P+E +L ++ A G+ +H +
Sbjct: 525 GYVQEEDEDEAFNMFRRMILDG-IAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQ 583
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
L +SLI Y CG + A VF + + VVS N++I+G+ + E AI+L++EM
Sbjct: 584 TCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLVE-AIDLFQEM 642
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ E + P E+T +L AC L G + I+K G+ D F
Sbjct: 643 QNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDF 688
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 8/203 (3%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+ T C L+ A +F Q+P N+ WN +I + I++ + F + ++ +
Sbjct: 289 VITACV--GLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEA-IDFFKNMWKTGV 345
Query: 121 FPNEFTLPFVIKAAARPVQFRVG-----QAIHGMFEDDLVISNSLIHFYAVCGDLAMAYC 175
TL V+ A A G QAI ++ + +SLI+ YA C + A
Sbjct: 346 KSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKK 405
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + ++++V WN+M+ G+ + G+ K ++L+ EM PDE T +LSACA
Sbjct: 406 VFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLEC 465
Query: 236 LEFGIWVSSHIEKNGIKMDLTFE 258
LE G + S I K+ + +L E
Sbjct: 466 LEMGRQLHSFIIKHNFEYNLFVE 488
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 88/156 (56%), Gaps = 8/156 (5%)
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
Q P+ + W +I ++ + ++ ++ ++ N+ P++ T V++A +
Sbjct: 714 QYPKSTIL-WTAIISGHTQNGCSEEALQLYQEMHRNNAR-PDQATFASVLRACSILASLG 771
Query: 142 VGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG-KKDVVSWNSMISGF 195
G+ IH + + D + ++++ YA CGD+ + VF +G K DV+SWNSMI GF
Sbjct: 772 DGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGF 831
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ G+ E A++++ EM+ ++PD+VT + VL+AC+
Sbjct: 832 AKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACS 867
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 21/230 (9%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q +++H ++ + Y+ S L + C ++E AR +F +P ++ + N
Sbjct: 568 EQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCG-----AIEAARYVFSCMPSRSVVSMNA 622
Query: 94 LIRAYSSSD--EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH---- 147
+I Y+ +D E I F Q + N P+E T ++ A P + +G+ IH
Sbjct: 623 IIAGYAQNDLVEAIDLF----QEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQ 678
Query: 148 --GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG-KKDVVSWNSMISGFVEGGFFEKA 204
G+ D + SL+ Y A +F K + W ++ISG + G E+A
Sbjct: 679 KRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEA 738
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++LY+EM N +PD+ T VL AC+ L G + S I G+ D
Sbjct: 739 LQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSD 788
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 66/127 (51%)
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
P + A+R + Q + F + ++++ YA CG++ A F + K+D+++
Sbjct: 90 PQRLAQASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILA 149
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WNS++S + G E+ I + ++ V P++ T +VLS+CA+ D++ G V +
Sbjct: 150 WNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVI 209
Query: 248 KNGIKMD 254
K G + +
Sbjct: 210 KMGFEFN 216
>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 677
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 119/246 (48%), Gaps = 11/246 (4%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLTNQK--QLKRIHAQMLSTDFFFDPYSASKLFTPCALS 68
+ R N +V HF Q + K +H ++ T + S L AL
Sbjct: 4 VLRRANNALSSVKQYQSLLNHFAATQSISKTKALHCHVI-TGGRVSGHILSTLSVTYALC 62
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTL 127
+ YARK+F+++PQ +L ++N +IR Y + +F+++V P+ +T
Sbjct: 63 --GHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTY 120
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
PFV KAA ++G +HG F D + N+L+ Y G + MA VF ++
Sbjct: 121 PFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKN 180
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DV+SWN+MISG+ G+ A+ ++ M E+V D T+V +L C +DLE G V
Sbjct: 181 RDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNV 240
Query: 243 SSHIEK 248
+E+
Sbjct: 241 HKLVEE 246
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 99/195 (50%), Gaps = 8/195 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++L + F D Y + L F +E AR +FD + ++ +WNT+I Y +
Sbjct: 139 VHGRILRSWFGRDKYVQNALLA--MYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRN 196
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DDLVI 156
+ M+F +V N + T+ ++ +G+ +H + E D + +
Sbjct: 197 GYMNDALMMFDWMV-NESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEV 255
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+L++ Y CG + A VF + ++DV++W MI+G+ E G E A+EL R M+ E V
Sbjct: 256 KNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGV 315
Query: 217 KPDEVTMVVVLSACA 231
+P+ VT+ ++S C
Sbjct: 316 RPNAVTIASLVSVCG 330
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 90/183 (49%), Gaps = 6/183 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ AR +FD++ + ++ TW +I Y+ D +++ + +L+ PN T+ ++
Sbjct: 269 MDEARFVFDRMERRDVITWTCMINGYTE-DGDVENALELCRLMQFEGVRPNAVTIASLVS 327
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
++ G+ +HG D++I SLI YA C + + + VF K
Sbjct: 328 VCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGP 387
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W+++I+G V+ A+ L++ M E+V+P+ T+ +L A A DL + + ++
Sbjct: 388 WSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLT 447
Query: 248 KNG 250
K G
Sbjct: 448 KTG 450
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 10/159 (6%)
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
W+ +I A +E + + + + PN TL ++ A A R IH
Sbjct: 388 WSAII-AGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYL 446
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK----DVVSWNSMISGFVEGGFF 201
F L + L+H Y+ CG L A+ +F I +K DVV W ++ISG+ G
Sbjct: 447 TKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDG 506
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
A++++ EM V P+E+T L+AC+ +E G+
Sbjct: 507 HNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGL 545
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 125/253 (49%), Gaps = 38/253 (15%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H + +L +IH +++ + S+ + ALS+ ++YA K ++ P Y
Sbjct: 16 HQCKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYG 75
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH--- 147
WN +IR +S+S P +S +++Q++ P+ T PF++K+++R ++G ++H
Sbjct: 76 WNFVIRGFSNSRNPEKSISVYIQML-RFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSV 134
Query: 148 --GMFEDDLVISNSLIHFY-------------------------------AVCGDLAMAY 174
E DL I N+LIH Y A GD+ A
Sbjct: 135 VKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSAR 194
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE-MEVENVKPDEVTMVVVLSACAKK 233
VF + ++DVV+W+SMI G+V+ G + KA+E++ + M + + K +EVTMV V+ ACA
Sbjct: 195 LVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHL 254
Query: 234 RDLEFGIWVSSHI 246
L G V +I
Sbjct: 255 GALNRGKTVHRYI 267
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 40/237 (16%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+N+K +H ++ + +D + + L +F ARK+FD++P NL TWN
Sbjct: 121 LSNRKLGGSLHCSVVKSGLEWDLFICNTLIH--MYGSFRDQASARKLFDEMPHKNLVTWN 178
Query: 93 TLIRAYSSSDEPI-------------------------------QSFMIFLQLVYNSPYF 121
+++ AY+ S + + ++ IF Q++
Sbjct: 179 SILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSK 238
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCV 176
NE T+ VI A A G+ +H D +++ SLI YA CG + A+ V
Sbjct: 239 ANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSV 298
Query: 177 F--VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F + + D + WN++I G GF ++++L+ +M + PDE+T + +L+AC+
Sbjct: 299 FYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACS 355
>gi|302804037|ref|XP_002983771.1| hypothetical protein SELMODRAFT_180422 [Selaginella moellendorffii]
gi|300148608|gb|EFJ15267.1| hypothetical protein SELMODRAFT_180422 [Selaginella moellendorffii]
Length = 492
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 15/211 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ IHA++ S D S L + F +LE AR +FD++ N+ TW +I AY+
Sbjct: 185 RSIHARICSAGLELDVVVGSALVSM--HGRFGALEAARDVFDRMEHKNVITWCAMISAYA 242
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ P Q+ F ++ PN T V++A + +G+ +HG F+ +
Sbjct: 243 QNGHPRQALDGFARM---GRIKPNSVTFLAVLEACSLLGDLEIGRGVHGQIVEAGFDGEE 299
Query: 155 VISNSLIHFYAVCGDLAMAYCVF-----VMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+SN LI+ Y CG + A VF + + VVSWNSMI + + G +A+E+++
Sbjct: 300 NVSNGLINMYGKCGSWSDARVVFDAARRSSLRRNTVVSWNSMIEAYAQLGHANEAVEVFQ 359
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
EM ++ KPD+VT + ++ AC+ +E GI
Sbjct: 360 EMRLDGTKPDQVTFLEMMFACSHAGLVEQGI 390
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 20/200 (10%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE-FTLPF 129
L AR+ FD I +PNL++W L+ AY + + +F + + P E TL
Sbjct: 6 GELSRAREAFDAIEEPNLFSWAILMAAYVLNGHDRAALRLFRAM--DQQGIPAESATLVS 63
Query: 130 VIKAAA--------RPVQFRVGQAI------HGMFEDDLVISNSLIHFYAVCGDLAMAYC 175
I A A R ++ RV + + G D+++ ++I+ ++ CG + A
Sbjct: 64 AIGAIAGIGDLALARAIEVRVRRTVLDRIIVAGGARSDVIVETAMINMFSKCGAVIEALA 123
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF I +++VSWN+MI+ F + G +A+ELYR ME E ++ DE T VL AC +
Sbjct: 124 VFDRIQDRNLVSWNAMITAFAQNGHRREAVELYRRMEEEGIRADESTYPSVLGAC---QS 180
Query: 236 LEFGIWVSSHIEKNGIKMDL 255
L G + + I G+++D+
Sbjct: 181 LAEGRSIHARICSAGLELDV 200
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 16/195 (8%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+F+ C ++ A +FD+I NL +WN +I A++ + ++ ++ ++
Sbjct: 111 MFSKCG-----AVIEALAVFDRIQDRNLVSWNAMITAFAQNGHRREAVELYRRM-EEEGI 164
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
+E T P V+ A + G++IH E D+V+ ++L+ + G L A
Sbjct: 165 RADESTYPSVLGACQSLAE---GRSIHARICSAGLELDVVVGSALVSMHGRFGALEAARD 221
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + K+V++W +MIS + + G +A++ + M +KP+ VT + VL AC+ D
Sbjct: 222 VFDRMEHKNVITWCAMISAYAQNGHPRQALDGFARMG--RIKPNSVTFLAVLEACSLLGD 279
Query: 236 LEFGIWVSSHIEKNG 250
LE G V I + G
Sbjct: 280 LEIGRGVHGQIVEAG 294
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
Y CG+L+ A F I + ++ SW +++ +V G A+ L+R M+ + + + T
Sbjct: 1 MYGRCGELSRAREAFDAIEEPNLFSWAILMAAYVLNGHDRAALRLFRAMDQQGIPAESAT 60
Query: 223 MVVVLSACAKKRDLEF 238
+V + A A DL
Sbjct: 61 LVSAIGAIAGIGDLAL 76
>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
Length = 625
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 11/230 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+ +++L I A + ++DF + + L + A + L ARK+FD I +L +WN+
Sbjct: 21 SGREELDTIQASIAASDFHSNVVVKNSLVS--AYTRSGDLRSARKVFDSIENKDLISWNS 78
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
++ AYS + +F ++ P+ T ++ A + +G+ +H
Sbjct: 79 MVVAYSQHGHGEEMLELFRKM----DVEPDSITYASILGACSAMELLELGKEVHARVSRS 134
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F+ D ++ +LI+ Y+ CG L A VF I D WN+MISG V+ G +A+ L+
Sbjct: 135 RFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHGRAREALGLF 194
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
M+ E+V+ D+V+ + +LSAC DL GI + H G+ DL E
Sbjct: 195 ERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGMDKDLVVE 244
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
RI + TD F D + ++ C LE A F+++ + N TW+ ++ A+
Sbjct: 333 RITESKIRTDVFLDT-AIVNMYAKCG-----ELETAMSYFEKMRRKNAVTWSAMVGAFIQ 386
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG------MFEDDL 154
++ ++L++V + + P+E TL + A +R + G+AIH ++ L
Sbjct: 387 QGYDREALDLYLRMV-SEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETLQNCL 445
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ NSL++ YA CG LA+A +F + ++D SWN++I G G ++ + L+ EM +
Sbjct: 446 FLQNSLLNMYAKCGCLAIANTMFSNLQRRDSFSWNTIIVGHAHHGDVDEVLSLHGEMVQD 505
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
V PD VT VL AC+ L+ G
Sbjct: 506 GVDPDYVTFACVLLACSHAGLLDRG 530
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 98/186 (52%), Gaps = 7/186 (3%)
Query: 68 STFSSLEYARKMFDQI-PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
S ++ ARKMFD + + N+ +WN++I AY+ S ++ ++ +L+ P++ T
Sbjct: 252 SKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELY-ELMKEEGVQPDDIT 310
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ A G IH + D+ + ++++ YA CG+L A F +
Sbjct: 311 YAGALGACTSYGGSAKGAEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMR 370
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+K+ V+W++M+ F++ G+ +A++LY M E +P E+T+ L+AC++ L+ G
Sbjct: 371 RKNAVTWSAMVGAFIQQGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGKA 430
Query: 242 VSSHIE 247
+ S I+
Sbjct: 431 IHSRIQ 436
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 17/226 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +HA++ + F DP A+ L ++ C + LE AR++FD I + WN +I
Sbjct: 125 KEVHARVSRSRFKSDPALAAALINMYSKCGV-----LESARRVFDGIQSVDPSPWNAMIS 179
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMF 150
++ +F ++ S ++ + ++ A G IH GM
Sbjct: 180 GLVQHGRAREALGLFERMKAESVRI-DKVSYLTILSACCALEDLHEGIRIHEHASACGM- 237
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVF-VMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ DLV+ ++ + Y+ C + +A +F M K +VVSWNSMI+ + + G +A+ELY
Sbjct: 238 DKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELYE 297
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M+ E V+PD++T L AC G + S I ++ I+ D+
Sbjct: 298 LMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESKIRTDV 343
>gi|255565583|ref|XP_002523781.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536869|gb|EEF38507.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 661
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 106/196 (54%), Gaps = 11/196 (5%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+HAQ++ +D+ P + L A +L A K+F++I ++ W+ ++ Y+ +
Sbjct: 419 VHAQVIKSDYEKSPSVGTALLD--AYVKLGNLNEASKVFERIDDKDIVAWSAMVAGYAQT 476
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV-------QFRVGQAIHGMFEDDL 154
+ + I +Q+ PNE+T VI A P QF +I F D L
Sbjct: 477 GDTEGAVKILIQMAKKGVE-PNEYTFSSVINACTAPTAAVEQGKQFH-AWSIKSRFNDAL 534
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+S++L+ YA G++ A VF G +D+VSWNSM+SG+ + G KA+E+++EM+ +
Sbjct: 535 CVSSALVTMYAKRGEIESANEVFRRQGVRDLVSWNSMVSGYAQHGHARKALEVFKEMQDQ 594
Query: 215 NVKPDEVTMVVVLSAC 230
N++ D VT + V+SAC
Sbjct: 595 NLELDGVTFIGVISAC 610
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 9/220 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H + + F D + L S + +E +++FD++ + N+ +W +L+ Y+
Sbjct: 117 QVHDYCVKSGFLEDISVGTSLVDMYMKSEY--VEEGKRVFDEMEERNVVSWTSLLVGYAH 174
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR-VGQAIHGM-----FEDDL 154
+ +++ F ++ + PN FT V+ A A G IH M FE +
Sbjct: 175 NGLNMEALECFFEMQAGAIK-PNPFTFATVLGALADSKAIADKGVQIHTMVIKNGFEATI 233
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ NSLI+ Y+ G + A VF + +D +SWNSM++G+V G + +AIE++ + +
Sbjct: 234 FVCNSLINMYSKSGMVKNAKAVFDNMVTRDAISWNSMVAGYVANGLYLEAIEMFYHLRLA 293
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
VK V+ +CA ++L F + + K G + D
Sbjct: 294 GVKLTNFIFSSVIKSCANIKELGFARQLHGQVLKGGFEYD 333
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 11/221 (4%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PNP T G + ++ +IH ++ F + + L + S ++
Sbjct: 195 PNPFTFATVLGALADSKAIADKGV--QIHTMVIKNGFEATIFVCNSLINMYSKSGM--VK 250
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
A+ +FD + + +WN+++ Y ++ +++ +F L N F VIK+
Sbjct: 251 NAKAVFDNMVTRDAISWNSMVAGYVANGLYLEAIEMFYHLRLAGVKLTN-FIFSSVIKSC 309
Query: 135 ARPVQFRV-----GQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI-GKKDVVSW 188
A + GQ + G FE D I +L+ Y ++ A+ +F M+ G ++VVSW
Sbjct: 310 ANIKELGFARQLHGQVLKGGFEYDHNIRTALMVAYNKGREIDDAFKIFSMMYGIRNVVSW 369
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
++ISG ++ G E+A+ L+ EM E V+P++ T +L+A
Sbjct: 370 TAIISGHLQNGLAEQAVNLFCEMSREGVRPNDYTFSTILAA 410
>gi|255580945|ref|XP_002531291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529124|gb|EEF31104.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 15/203 (7%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D S + + CA + LE AR +FDQ+P + +WN+LI Y++ + F+I
Sbjct: 293 DVVSWNTIIAGCAKA--GDLELARTLFDQMPCRDFVSWNSLIAEYANRGD----FIIVRD 346
Query: 114 LVYN---SPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYA 165
L+Y+ PN T+ +I AAA G+ HG + D V+ ++LI Y
Sbjct: 347 LLYDMVAENVVPNNTTMASLISAAAEIGALDQGRWAHGWVIRMQIKIDAVLGSALIDMYC 406
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
CG + A+ +F I +KDV+ W +MI+GF G+ KA+EL+ EM+ NV P+E+T V
Sbjct: 407 KCGSINNAFLIFNEIIEKDVILWTTMITGFAFHGYGSKALELFYEMQA-NVTPNEITFVS 465
Query: 226 VLSACAKKRDLEFGIWVSSHIEK 248
VL+AC+ ++ GI + + +++
Sbjct: 466 VLAACSHSGLVDQGIEIFNSLKQ 488
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 15/229 (6%)
Query: 29 HPHFLTNQK-----QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQ- 82
HP L +K K+I QM+ ++ + S+L A+S +L+ A +F+
Sbjct: 32 HPSLLLLEKSNSRDNFKQILGQMMRSNLIGQTFPMSRLIFFSAISHPENLDMALILFNHY 91
Query: 83 IPQPNLYTWNTLIRAYSSSD-EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
P PNLY +NT+I A SS+ +P+ + M+ ++ P++ TL +++ +A + +
Sbjct: 92 TPYPNLYIYNTMISALSSATAQPLYNSML------STGIGPDKHTLLYLLHSARHVSEVK 145
Query: 142 VGQ--AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
Q AI + NSLI Y G +A+ +F + DVVS+N MI+G + G
Sbjct: 146 QVQCHAIILGLSTYRYLQNSLIKVYLENGLFCLAHKIFRQMPAPDVVSFNIMITGCAKQG 205
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+AI+L +M ++KPDE TM+ +L +C K + FG V + IE+
Sbjct: 206 CGLEAIQLLYDMMALDLKPDEFTMLGLLVSCGKLGEARFGKTVHAWIER 254
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 103/220 (46%), Gaps = 45/220 (20%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF---PNEFTLPFVIK 132
A K+F Q+P P++ ++N +I + +++ +QL+Y+ P+EFT+ ++
Sbjct: 179 AHKIFRQMPAPDVVSFNIMITGCAKQGCGLEA----IQLLYDMMALDLKPDEFTMLGLLV 234
Query: 133 AAARPVQFRVGQAIHGMFE-------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ + + R G+ +H E +L++ N+L+ Y C +L +A+ F + +KDV
Sbjct: 235 SCGKLGEARFGKTVHAWIERRKSITSSNLILGNALLDMYVKCQELDLAHRTFSALTEKDV 294
Query: 186 VSWNSMISGFVEGGFFEKAIELYREME-------------------------------VE 214
VSWN++I+G + G E A L+ +M E
Sbjct: 295 VSWNTIIAGCAKAGDLELARTLFDQMPCRDFVSWNSLIAEYANRGDFIIVRDLLYDMVAE 354
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
NV P+ TM ++SA A+ L+ G W + + IK+D
Sbjct: 355 NVVPNNTTMASLISAAAEIGALDQGRWAHGWVIRMQIKID 394
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 102/188 (54%), Gaps = 7/188 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S L Y +FD++ P ++ WNT+IR +S+S +P Q ++ + N P+ T
Sbjct: 49 SATKDLGYTLLLFDRLATPYIFLWNTIIRGFSASSQP-QMVLVAYSRLRNHGVIPDRHTF 107
Query: 128 PFVIKAAAR-----PVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
P ++KA ++ P QF G+ + D + NSL+ +A CG + + +F+ K
Sbjct: 108 PLLLKAFSKLRNENPFQFYAHIVKFGL-DFDAFVQNSLVSAFAHCGYVDCSRRLFIETAK 166
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
KDVVSW ++I+G + G +A+E + EM V+ DEVT+V VL A A RD+ FG WV
Sbjct: 167 KDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWV 226
Query: 243 SSHIEKNG 250
++G
Sbjct: 227 HGFYVESG 234
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 122/220 (55%), Gaps = 9/220 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+ +A ++ FD + + L + A + ++ +R++F + + ++ +W LI
Sbjct: 124 QFYAHIVKFGLDFDAFVQNSLVS--AFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLR 181
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED------DL 154
+ +++ F+++ +S +E T+ V+ AAA G+ +HG + + D+
Sbjct: 182 NGRAVEALECFVEM-RSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDV 240
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ ++L+ Y+ CG A VF + +++VSW ++I+G+V+ +++A+++++EM +E
Sbjct: 241 YVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIE 300
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++P++ T+ L+ACA+ L+ G W+ +++++ + ++
Sbjct: 301 GIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLN 340
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 14/201 (6%)
Query: 48 STDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEP 104
S +D Y S L ++ C + A K+F+++P NL +W LI Y +
Sbjct: 233 SGRVIWDVYVGSALVDMYSKCGYC-----DDAVKVFNEMPTRNLVSWGALIAGYVQCNRY 287
Query: 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS----- 159
++ +F +++ PN+ T+ + A A+ G+ +H + + NS
Sbjct: 288 KEALKVFQEMIIEGIE-PNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTA 346
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
L+ Y+ CG + A VF + KDV W +MI+G G ++ L+ +M V+P+
Sbjct: 347 LVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPN 406
Query: 220 EVTMVVVLSACAKKRDLEFGI 240
VT + VLSACA ++ G+
Sbjct: 407 GVTFLGVLSACAHGGLVDEGL 427
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 17/232 (7%)
Query: 17 PTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSL 73
P ++T+ L + ++ IH +++++ F D + +S L + C L
Sbjct: 205 PNSVTITTAISSCARLLDLNRGME-IHEELINSGFLLDSFISSALVDMYGKCG-----HL 258
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A ++F+Q+P+ + WN++I Y + I +F ++ YN P TL +I
Sbjct: 259 EMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRM-YNEGVKPTLTTLSSLIMV 317
Query: 134 AARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+R + G+ +HG + D+ +++SL+ Y CG + +A +F +I K VVSW
Sbjct: 318 CSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSW 377
Query: 189 NSMISGFV-EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
N MISG+V EG FE A+ L+ EM V+ D +T VL+AC++ LE G
Sbjct: 378 NVMISGYVAEGKLFE-ALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKG 428
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 14/224 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K IH ++ T D S L + C ++ E A +F+++P+ ++ WNT+I
Sbjct: 126 KMIHTCLIKTGLMMDIVVGSSLVGMYGKC-----NAFEKAIWLFNEMPEKDVACWNTVIS 180
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
Y S + + + L+ + PN T+ I + AR + G IH F
Sbjct: 181 CYYQSGN-FKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFL 239
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D IS++L+ Y CG L MA +F + KK VV+WNSMISG+ G I+L++ M
Sbjct: 240 LDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRM 299
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E VKP T+ ++ C++ L G +V + +N I+ D+
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDV 343
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 6/176 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E A K+F IP+ + +WN +I Y + + ++ +F ++ S + T V
Sbjct: 357 GKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEM-RKSYVESDAITFTSV 415
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A ++ G+ IH + +++ V+ +L+ YA CG + A+ VF + K+D+
Sbjct: 416 LTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDL 475
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
VSW SMI+ + G A+EL+ EM NVKPD V + +LSAC ++ G +
Sbjct: 476 VSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCY 531
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 16/228 (7%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQP-NLYTWN 92
KQ K IH ++++ D + L + C L ++A+ +FD + P + WN
Sbjct: 20 KQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHL-----YDHAKCVFDNMENPCEISLWN 74
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
L+ Y+ + +++ +F +L++ PY P+ +T P V KA ++ +G+ IH
Sbjct: 75 GLMAGYTKNYMYVEALELFEKLLH-YPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLI 133
Query: 152 D-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
D+V+ +SL+ Y C A +F + +KDV WN++IS + + G F+ A+E
Sbjct: 134 KTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALE 193
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ M +P+ VT+ +S+CA+ DL G+ + + +G +D
Sbjct: 194 YFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLD 241
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF-VMIGKK 183
+++A + G+ IH ++D+ + +LI+ Y C A CVF M
Sbjct: 9 LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPC 68
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
++ WN +++G+ + + +A+EL+ ++ +KPD T V AC G +
Sbjct: 69 EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMI 128
Query: 243 SSHIEKNGIKMDLT 256
+ + K G+ MD+
Sbjct: 129 HTCLIKTGLMMDIV 142
>gi|195615078|gb|ACG29369.1| pentatricopeptide repeat protein PPR1106-17 [Zea mays]
gi|414868049|tpg|DAA46606.1| TPA: pentatricopeptide repeat protein PPR1106-17 [Zea mays]
Length = 618
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 117/228 (51%), Gaps = 7/228 (3%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
F + ++R HA L + + ++ L + A F + ARK+FD++P+ ++ +W
Sbjct: 101 FCRRELDVRRAHAVALRSLGSLGVFVSNNLIS--AYVRFDEVANARKVFDEMPERSIVSW 158
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
++ Y + + + ++ + N T ++K+ R+GQ +H
Sbjct: 159 TAMMNGYQKLGCHGEVARLLMDMLI-AGVQGNSLTFVCLLKSCGERCDARLGQQVHCCVV 217
Query: 152 ----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
++++ +++ HFYA CGD+A A VF + +DV+SW +MI+ +V+ G +KA+++
Sbjct: 218 KGGWSNVIVDSAITHFYAQCGDVAAASTVFDRMASRDVISWTTMITAYVQHGHSDKALQM 277
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ M E +P+E T+ L ACA+++ L FG + I K K D+
Sbjct: 278 FPTMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHGAIVKKLYKYDI 325
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 107/185 (57%), Gaps = 6/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +FD++ ++ +W T+I AY ++ +F +V + + PNEFT+ +KA A
Sbjct: 243 ASTVFDRMASRDVISWTTMITAYVQHGHSDKALQMFPTMV-SEGFRPNEFTVCSALKACA 301
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R G+ +HG +++ D+ + ++L+ YA CG++ A VF + +++ ++W S
Sbjct: 302 EEKALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTS 361
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG+ + G E+A+ L+R+M++ V + +T+V +LSAC + + G + + I KN
Sbjct: 362 MISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQIIKNC 421
Query: 251 IKMDL 255
++ +L
Sbjct: 422 MEENL 426
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
YA ++ + +P + W +I Y++ +++ +++++ PN +T +KA
Sbjct: 444 YATRILEAMPDRDAVAWTAMISGYNNLGHNVEALKSLDEMLWDG-VVPNTYTYSSALKAC 502
Query: 135 ARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
AR + G+ IHG+ SN SLI Y CG + A VF + + ++V+W
Sbjct: 503 ARLEALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWK 562
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI+GF + G E+A++ M+ E DE + VLS+C
Sbjct: 563 VMITGFTQNGRSEEALKYMFLMQQEGYVVDEFVLSTVLSSCG 604
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 8/214 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H ++ + +D + S L T + + A+ +FD++P+ N TW ++I Y+
Sbjct: 310 KQLHGAIVKKLYKYDIHVGSALVT--MYARCGEVFDAQTVFDKMPRRNTITWTSMISGYA 367
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S ++ ++F ++ F N T+ ++ A G+ +H E++L
Sbjct: 368 QSGCGEEAVLLFRKMKMRR-VFVNHLTIVSLLSACGSMQSIYHGKELHAQIIKNCMEENL 426
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L+ FY G+ A + + +D V+W +MISG+ G +A++ EM +
Sbjct: 427 QIGSTLVWFYNRRGEHTYATRILEAMPDRDAVAWTAMISGYNNLGHNVEALKSLDEMLWD 486
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
V P+ T L ACA+ L+ G + + K
Sbjct: 487 GVVPNTYTYSSALKACARLEALQDGRRIHGVVNK 520
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLI 95
+RIH + T F S +F C+L ++ AR++FD +P+ NL TW +I
Sbjct: 512 RRIHGVVNKTQAF------SNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMI 565
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
++ + ++ + ++ L+ Y +EF L V+ +
Sbjct: 566 TGFTQNGRSEEA-LKYMFLMQQEGYVVDEFVLSTVLSSCG 604
>gi|357446587|ref|XP_003593569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482617|gb|AES63820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 528
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 16/225 (7%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
IHA+++ + FD + + L LS+ + + A ++F IP P++ +W +LI S
Sbjct: 79 EIHARLIKSGHIFDGFIKNTLLYF-YLSS-NDVVSATRVFKSIPSPDVVSWTSLISGLSK 136
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG------MFEDDL 154
++ F + PN TL I A + + G+AIH M + ++
Sbjct: 137 CGFETEAIEAFSSINVK----PNALTLVSAISACSSIGAIKFGKAIHAYGLKSLMIDGNI 192
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V N+ + YA CG + A VFV + K+DV+SW +++ + GG +A+E++++M V
Sbjct: 193 VFYNAALDLYAKCGFFSNARNVFVKMSKRDVISWTTLLMAYARGGQCGEAVEVFKQMIVS 252
Query: 215 N-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+P+E T+V VLSACA L G WV +IEK ++DL +
Sbjct: 253 GEAEPNESTVVTVLSACASIGSLSLGCWVHDYIEK---RIDLDVD 294
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 108/204 (52%), Gaps = 19/204 (9%)
Query: 40 KRIHAQ-----MLSTDFFFDPYSAS-KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K IHA M+ + F Y+A+ L+ C FS+ AR +F ++ + ++ +W T
Sbjct: 176 KAIHAYGLKSLMIDGNIVF--YNAALDLYAKCGF--FSN---ARNVFVKMSKRDVISWTT 228
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED- 152
L+ AY+ + ++ +F Q++ + PNE T+ V+ A A +G +H E
Sbjct: 229 LLMAYARGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSLGCWVHDYIEKR 288
Query: 153 -----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
D I N+L++ Y CGD+ M VF M+ KDV+SW ++I G G+ ++ +++
Sbjct: 289 IDLDVDGNIGNALVNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICGLAMNGYGKQVVQM 348
Query: 208 YREMEVENVKPDEVTMVVVLSACA 231
+ M V V PD+VT + +LSAC+
Sbjct: 349 FSHMLVHGVLPDDVTFIGLLSACS 372
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
QI PN N ++ S S + +++F + + N +T +KA
Sbjct: 16 QIINPNPQLLNQNLKLLSKSHDNVKAFFNLCNQMLSCSSSHNHYTFTHALKACCSYHAHA 75
Query: 142 VGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
G IH D I N+L++FY D+ A VF I DVVSW S+ISG
Sbjct: 76 KGLEIHARLIKSGHIFDGFIKNTLLYFYLSSNDVVSATRVFKSIPSPDVVSWTSLISGLS 135
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ GF +AIE + + NVKP+ +T+V +SAC+ ++FG
Sbjct: 136 KCGFETEAIEAFSSI---NVKPNALTLVSAISACSSIGAIKFG 175
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 14/226 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K L +++ Q++ + + K C F + YA K F ++ +P++ WN +I+
Sbjct: 1 KHLDQVYVQLIVSGLHKCRFLMIKFINACL--HFGDVNYAHKAFREVSEPDILLWNAIIK 58
Query: 97 AYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
Y+ D PI+ +M +Q+ S PN FT +V+KA +G+ IHG
Sbjct: 59 GYTQKNIVDAPIRMYMD-MQI---SQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKY 114
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F ++ + NSL+ YA G ++ A VF + + VVSW S+ISG+V+ G +A+ ++
Sbjct: 115 GFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVF 174
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+EM NVKPD + +V V++A DL G + + K G++ +
Sbjct: 175 KEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFE 220
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 114/222 (51%), Gaps = 12/222 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH Q F + + + L + A F + YAR +FD++ + +W ++I Y
Sbjct: 105 KQIHGQTFKYGFGSNVFVQNSLVSMYA--KFGQISYARIVFDKLHDRTVVSWTSIISGYV 162
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-------FED 152
+ +P+++ +F ++ P+ L V+ A G++IHG+ FE
Sbjct: 163 QNGDPMEALNVFKEM-RQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEP 221
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+VIS L YA G + +A F + K +++ WN+MISG+ G+ E+AI+L+REM
Sbjct: 222 DIVIS--LTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMI 279
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+N++ D +TM + A A+ LE W+ +I K+ + D
Sbjct: 280 TKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDD 321
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 8/198 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q K IH + F+P L T A +E AR F+++ +PNL WN +I
Sbjct: 204 QGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGL--VEVARFFFNRMEKPNLILWNAMISG 261
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y+++ ++ +F +++ + + T+ + A+A+ + + + G + D
Sbjct: 262 YANNGYGEEAIKLFREMITKNIRV-DSITMRSAVLASAQVGSLELARWLDGYISKSEYRD 320
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D ++ LI YA CG + +A CVF + KDVV W+ MI G+ G ++AI LY EM+
Sbjct: 321 DTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMK 380
Query: 213 VENVKPDEVTMVVVLSAC 230
V P++ T + +L+AC
Sbjct: 381 QAGVCPNDGTFIGLLTAC 398
>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Glycine max]
Length = 667
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 126/231 (54%), Gaps = 13/231 (5%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q K++HA+++ D + ASKL + S + +ARK+FD P N +TWN ++
Sbjct: 51 RQGKQLHARLILLSVTPDNFLASKLILFYSKSNHA--HFARKVFDTTPHRNTFTWNAMLL 108
Query: 97 AYSSSDEPIQSFMIFLQLVYNSP--YFPNEFTLPFVIKAAARP-VQFRVGQAIH------ 147
YS + + +F +++ P+ FT+ V+KA A + + +H
Sbjct: 109 GYSFNSMFRHALNLFGSFTFSTTPNASPDNFTISCVLKALASSFCSPELAKEVHCLILRR 168
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
G++ D V+ N+LI Y C ++ +A VF + ++D+V+WN+MI G+ + +++ L
Sbjct: 169 GLYSDIFVL-NALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQRRLYDECKRL 227
Query: 208 YREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
Y EM V V P+ VT V V+ AC + DL FG+ + ++++GI++D++
Sbjct: 228 YLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEIDVSL 278
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 108/252 (42%), Gaps = 38/252 (15%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +H +L + D + + L T + AR +FD + + ++ TWN +I YS
Sbjct: 159 KEVHCLILRRGLYSDIFVLNALIT--CYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYS 216
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
+ ++L+++ S PN T V++A + + G +H E D+
Sbjct: 217 QRRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEIDV 276
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS--------------------------- 187
+SN+++ YA CG L A +F + +KD V+
Sbjct: 277 SLSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRGVENP 336
Query: 188 ----WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
WN++ISG V+ FE +L R+M+ + P+ VT+ +L + + +L G V
Sbjct: 337 GLNMWNAVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKEVH 396
Query: 244 SHIEKNGIKMDL 255
+ + G + ++
Sbjct: 397 GYAIRRGYEQNV 408
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+ ++ A +F + P L WN +I + + F + Q+ S PN TL
Sbjct: 320 YGLVDDAMGVFRGVENPGLNMWNAVISGMVQNKQFEGVFDLVRQM-QGSGLSPNAVTLAS 378
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
++ + + R G+ +HG +E ++ +S S+I Y G + A VF + +
Sbjct: 379 ILPSFSYFSNLRGGKEVHGYAIRRGYEQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRS 438
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++ W S+IS + G A+ LY +M + ++PD VT+ VL+ACA
Sbjct: 439 LIIWTSIISAYAAHGDAGLALGLYAQMLDKGIRPDPVTLTSVLTACA 485
>gi|217074958|gb|ACJ85839.1| unknown [Medicago truncatula]
gi|388521431|gb|AFK48777.1| unknown [Medicago truncatula]
Length = 515
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 16/225 (7%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
IHA+++ + FD + + L LS+ + + A ++F IP P++ +W +LI S
Sbjct: 79 EIHARLIKSGHIFDGFIKNTLLYF-YLSS-NDVVSATRVFKSIPSPDVVSWTSLISGLSK 136
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG------MFEDDL 154
++ F + PN TL I A + + G+AIH M + ++
Sbjct: 137 CGFETEAIEAFSSINVK----PNALTLVSAISACSSIGAIKFGKAIHAYGLKSLMIDGNI 192
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V N+ + YA CG + A VFV + K+DV+SW +++ + GG +A+E++++M V
Sbjct: 193 VFYNAALDLYAKCGFFSNARNVFVKMSKRDVISWTTLLMAYARGGQCGEAVEVFKQMIVS 252
Query: 215 N-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+P+E T+V VLSACA L G WV +IEK ++DL +
Sbjct: 253 GEAEPNESTVVTVLSACASIGSLSLGCWVHDYIEK---RIDLDVD 294
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 19/204 (9%)
Query: 40 KRIHAQ-----MLSTDFFFDPYSAS-KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K IHA M+ + F Y+A+ L+ C FS+ AR +F ++ + ++ +W T
Sbjct: 176 KAIHAYGLKSLMIDGNIVF--YNAALDLYAKCGF--FSN---ARNVFVKMSKRDVISWTT 228
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED- 152
L+ AY+ + ++ +F Q++ + PNE T+ V+ A A +G +H E
Sbjct: 229 LLMAYARGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSLGCWVHDYIEKR 288
Query: 153 -----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
D I N+L++ Y CGD+ M VF M+ KDV+SW ++I G + ++ +++
Sbjct: 289 IDLDVDGNIGNALVNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICGLAMNEYGKQVVQM 348
Query: 208 YREMEVENVKPDEVTMVVVLSACA 231
+ M V V PD+VT + +LSAC+
Sbjct: 349 FSHMLVHGVLPDDVTFIGLLSACS 372
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
QI PN N ++ S S + +++F + + N +T +KA
Sbjct: 16 QIINPNPQLLNQNLKLLSKSHDNVKAFFNLCNQMLSCSSSHNHYTFTHALKACCSYHAHA 75
Query: 142 VGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
G IH D I N+L++FY D+ A VF I DVVSW S+ISG
Sbjct: 76 KGLEIHARLIKSGHIFDGFIKNTLLYFYLSSNDVVSATRVFKSIPSPDVVSWTSLISGLS 135
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ GF +AIE + + NVKP+ +T+V +SAC+ ++FG
Sbjct: 136 KCGFETEAIEAFSSI---NVKPNALTLVSAISACSSIGAIKFG 175
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 135/288 (46%), Gaps = 68/288 (23%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
+T+ + L ++H +L + F D Y + L A FS+ ++A K+F IP PN++ WN
Sbjct: 43 ITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWN 102
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---- 148
+I+ +++ ++ + ++V ++ PN+FT P + KA + + G+ IHG
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVIDAR--PNKFTYPTLFKACSVAQAVQEGRQIHGHVVK 160
Query: 149 ----------------------------MF---EDDLVISNSLIHFYAVCGDLAMAYCVF 177
MF E D+V N++I Y CG L A +F
Sbjct: 161 HGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLF 220
Query: 178 ------------VMIG-------------------KKDVVSWNSMISGFVEGGFFEKAIE 206
VMI ++D +SW+SM+ G++ G +++A+E
Sbjct: 221 AQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALE 280
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++++M+ E +P + VL+AC+ ++ G WV +++++N IK+D
Sbjct: 281 IFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLD 328
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 6/171 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L+ +L ARK+FD++ + + +W++++ Y S+ ++ IF Q+ P F
Sbjct: 237 GLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETR-PGRF 295
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMI 180
L V+ A + G+ +H + D V+ +L+ YA CG L M + VF +
Sbjct: 296 ILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEM 355
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++++ +WN+MI G G E A+EL+ +++ +KP+ +T+V VL+ACA
Sbjct: 356 KEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACA 406
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 148 GMFEDDLVISNSLIHFYAV--CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
G F+D V S +L+ YA + A VF I +V WN +I G +E KAI
Sbjct: 60 GHFQDHYV-SGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAI 118
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
Y M V + +P++ T + AC+ + ++ G + H+ K+GI D+
Sbjct: 119 YFYGRM-VIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDV 167
>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 102/181 (56%), Gaps = 13/181 (7%)
Query: 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
+A+ +F C +E ARK+FD I +L TW T I AY +D P+++ + Q++
Sbjct: 148 AAAGMFARCG-----RVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMML 202
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCGDL 170
FP+ TL VI+A + F++ +HG+ + L + +LI Y CG L
Sbjct: 203 QG-IFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSL 261
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
A VF + ++++++W++MISG+ G+ +A+ L+ +M+ +VKPD +T V +LSAC
Sbjct: 262 TYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKA-SVKPDHITFVSILSAC 320
Query: 231 A 231
+
Sbjct: 321 S 321
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 94/196 (47%), Gaps = 11/196 (5%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
RIH ++ + + ++ L T E +R++FD++P N +W+ +I A
Sbjct: 31 RIHQDVVKFGYQSQVFISNSLIT--MYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQ 88
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ-----FRVGQAIHGMFEDDLV 155
D + F +F Q++ P+ + + A R + +RV + + D
Sbjct: 89 DDRCKEGFSLFRQMLSEGSR-PSRGAILNAM-ACVRSHEEADDVYRV--VVENGLDFDQS 144
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ ++ +A CG + +A +F I KD+V+W + I +V+ +A+ L ++M ++
Sbjct: 145 VQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQG 204
Query: 216 VKPDEVTMVVVLSACA 231
+ PD +T++ V+ AC+
Sbjct: 205 IFPDAITLLGVIRACS 220
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ FT PF+IKA + F G IH ++ + ISNSLI Y C ++ V
Sbjct: 8 PDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQV 67
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + K+ VSW+++I ++ ++ L+R+M E +P + +L+A A R
Sbjct: 68 FDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP---SRGAILNAMACVRSH 124
Query: 237 EFGIWVSSHIEKNGIKMDLTFE 258
E V + +NG+ D + +
Sbjct: 125 EEADDVYRVVVENGLDFDQSVQ 146
>gi|242054925|ref|XP_002456608.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
gi|241928583|gb|EES01728.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
Length = 458
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 103/183 (56%), Gaps = 8/183 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A ++F ++P+ N+ +WN +I S + ++ +FL++ PNE T P V+ + A
Sbjct: 126 ADRLFRRMPERNVVSWNAMIGGCSQAGLSEEAVNLFLEMCREG-VTPNESTFPCVLTSVA 184
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
VG+++H + + D+ I NSL+ FYA CG L + F + +K+VVSWN+
Sbjct: 185 NAGALGVGRSVHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKMNRKNVVSWNA 244
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC--AKKRDLEFGIWVSSHIEK 248
+I G+ + G E+A++ YR M +KPD VT++ +L C A D + ++ ++ +E+
Sbjct: 245 LICGYAQNGKGEEALDAYRMMRATGLKPDNVTLLGLLFGCNHAGLVDEGYALFKTTEMEQ 304
Query: 249 NGI 251
GI
Sbjct: 305 PGI 307
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+P ++ + I A + + +F Q++ + PNEFT V+++A R
Sbjct: 1 MPHRDVVSATAAIGALTRRGRHRDALALFSQVLADG-VAPNEFTFGTVLRSATALRAPRA 59
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCV--------------------- 176
G +H ++ + ++L+ YA G + A+ V
Sbjct: 60 GVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMREAHGVLDDTREPNVVSYTALIAGLLK 119
Query: 177 ----------FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
F + +++VVSWN+MI G + G E+A+ L+ EM E V P+E T V
Sbjct: 120 NGMFDEADRLFRRMPERNVVSWNAMIGGCSQAGLSEEAVNLFLEMCREGVTPNESTFPCV 179
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
L++ A L G V + K K+D+
Sbjct: 180 LTSVANAGALGVGRSVHASAIKFLGKLDV 208
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 14/226 (6%)
Query: 40 KRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++H+ +L FD S L+ C +E A +F+ + N+ WN ++
Sbjct: 265 KQLHSYLLKAGMSFDYITEGSLLDLYVKCG-----DIETAHDIFNLGDRTNVVLWNLMLV 319
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
AY + +SF IF Q+ + PN+FT P +++ Q +G+ IH + FE
Sbjct: 320 AYGQISDLAKSFEIFGQMQATGIH-PNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFE 378
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ +S LI Y+ L A + M+ K+DVVSW SMI+G+V+ F E+A+ ++EM
Sbjct: 379 SDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM 438
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ V PD + + SACA + + G+ + + + +G D++
Sbjct: 439 QDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISI 484
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 106/212 (50%), Gaps = 14/212 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q +IHA++ + + D + L+ C S E A +F +I + TWN
Sbjct: 464 RQGLQIHARVYVSGYAADISIWNTLVNLYARCGRS-----EEAFSLFREIDHKDEITWNG 518
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
LI + S Q+ M+F+++ + N FT I A A + G+ +HG
Sbjct: 519 LISGFGQSRLYEQALMVFMKMSQAGAKY-NVFTFISAISALANLADIKQGKQVHGRAVKT 577
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ ++N+LI Y CG + A +F + ++ VSWN++I+ + G +A++L+
Sbjct: 578 GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLF 637
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+M+ E +KP++VT + VL+AC+ +E G+
Sbjct: 638 DQMKQEGLKPNDVTFIGVLAACSHVGLVEEGL 669
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 9/223 (4%)
Query: 34 TNQKQL-KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
T Q +L ++IH+ + F D Y + L S + L+ ARK+ + + + ++ +W
Sbjct: 359 TGQIELGEQIHSLSIKNGFESDMYVSGVLID--MYSKYRCLDKARKILEMLEKRDVVSWT 416
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
++I Y D ++ F ++ + +P+ L A A R G IH
Sbjct: 417 SMIAGYVQHDFCEEALATFKEM-QDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYV 475
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ D+ I N+L++ YA CG A+ +F I KD ++WN +ISGF + +E+A+ +
Sbjct: 476 SGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMV 535
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ +M K + T + +SA A D++ G V K G
Sbjct: 536 FMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTG 578
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 97/188 (51%), Gaps = 6/188 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++F ++ + +W ++ Y+ ++F ++ Q+ + + P + L V+ A
Sbjct: 97 ARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHW-TAVIPTPYVLSSVLSACT 155
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ F G+ IH F + + N+LI Y G +A VF + D V++N+
Sbjct: 156 KGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNT 215
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ISG + G E A++++ EM++ ++PD VT+ +L+ACA DL+ G + S++ K G
Sbjct: 216 LISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAG 275
Query: 251 IKMDLTFE 258
+ D E
Sbjct: 276 MSFDYITE 283
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 146 IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
+ G+ D L I N LI YA G + A VF + +D VSW +M+SG+ + G ++A
Sbjct: 71 VRGLGADRL-IGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAF 129
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
LY +M V P + VLSAC K + G + + + K
Sbjct: 130 RLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQ 173
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 87/214 (40%), Gaps = 31/214 (14%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + KQ K++H + + T + A+ L + S+E A+ +F ++ N +WN
Sbjct: 561 LADIKQGKQVHGRAVKTGHTSETEVANALIS--LYGKCGSIEDAKMIFSEMSLRNEVSWN 618
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
T+I + S +++ +F Q+ PN+ T V+ A + G+ E+
Sbjct: 619 TIITSCSQHGRGLEALDLFDQM-KQEGLKPNDVTFIGVLAACSHV----------GLVEE 667
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
L S+ + Y + CV ++G+ G ++A EM
Sbjct: 668 GLSYFKSMSNVYGLNPIPDHYACVVDILGR---------------AGQLDRARRFVDEMP 712
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+ + + +LSAC +++E G + H+
Sbjct: 713 I---TANAMIWRTLLSACKVHKNIEIGELAAKHL 743
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 14/226 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K L +++ Q++ + + K C F + YA K F ++ +P++ WN +I+
Sbjct: 16 KHLDQVYVQLIVSGLHKCRFLMIKFINACL--HFGDVNYAHKAFREVSEPDILLWNAIIK 73
Query: 97 AYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
Y+ D PI+ +M +Q+ S PN FT +V+KA +G+ IHG
Sbjct: 74 GYTQKNIVDAPIRMYMD-MQI---SQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKY 129
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F ++ + NSL+ YA G ++ A VF + + VVSW S+ISG+V+ G +A+ ++
Sbjct: 130 GFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVF 189
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+EM NVKPD + +V V++A DL G + + K G++ +
Sbjct: 190 KEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFE 235
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 114/222 (51%), Gaps = 12/222 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH Q F + + + L + A F + YAR +FD++ + +W ++I Y
Sbjct: 120 KQIHGQTFKYGFGSNVFVQNSLVSMYA--KFGQISYARIVFDKLHDRTVVSWTSIISGYV 177
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-------FED 152
+ +P+++ +F ++ P+ L V+ A G++IHG+ FE
Sbjct: 178 QNGDPMEALNVFKEM-RQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEP 236
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+VIS L YA G + +A F + K +++ WN+MISG+ G+ E+AI+L+REM
Sbjct: 237 DIVIS--LTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMI 294
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+N++ D +TM + A A+ LE W+ +I K+ + D
Sbjct: 295 TKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDD 336
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 8/198 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q K IH + F+P L T A +E AR F+++ +PNL WN +I
Sbjct: 219 QGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGL--VEVARFFFNRMEKPNLILWNAMISG 276
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y+++ ++ +F +++ + + T+ + A+A+ + + + G + D
Sbjct: 277 YANNGYGEEAIKLFREMITKNIRV-DSITMRSAVLASAQVGSLELARWLDGYISKSEYRD 335
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D ++ LI YA CG + +A CVF + KDVV W+ MI G+ G ++AI LY EM+
Sbjct: 336 DTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMK 395
Query: 213 VENVKPDEVTMVVVLSAC 230
V P++ T + +L+AC
Sbjct: 396 QAGVCPNDGTFIGLLTAC 413
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 118/225 (52%), Gaps = 8/225 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ K++H+ +L D L S +E A ++FD + N+ WN ++
Sbjct: 261 RKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKS--GDIEEALQIFDSGDRTNVVLWNLMLV 318
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
AY D+ +SF IF +++ + PN+FT P +++ + +G+ IH + F+
Sbjct: 319 AYGQIDDLAKSFDIFYRML-AAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQ 377
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ +S LI Y+ G L A + MI +KDVVSW SMI+G+V+ F ++A+E ++EM
Sbjct: 378 SDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEM 437
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ + PD + + +SACA + + G + + + +G D++
Sbjct: 438 QACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVS 482
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 103/216 (47%), Gaps = 8/216 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH+ + F D Y + L S + L+ A+++ D I + ++ +W ++I Y
Sbjct: 365 EQIHSLTIKNGFQSDMYVSGVLID--MYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYV 422
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ ++ F ++ +P+ L I A A G IH + D+
Sbjct: 423 QHEFCKEALETFKEM-QACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADV 481
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I N L++ YA CG A+ F I K+ ++WN +ISGF + G +E+A++++ +M+
Sbjct: 482 SIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQA 541
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
K + T V +SA A D++ G + + + K G
Sbjct: 542 GAKYNVFTFVSSISASANLADIKQGKQIHARVIKTG 577
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 100/189 (52%), Gaps = 8/189 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++F+++ + +W ++ Y+ + ++ ++ ++ + S P + L ++ A
Sbjct: 96 ARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREM-HRSGVVPTPYVLSSILSACT 154
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ F++G+ IH G F + V N+LI Y C +A VF + D V++N
Sbjct: 155 KTELFQLGRLIHVQVYKQGFFSETFV-GNALISLYLRCRSFRLADRVFCDMLYCDSVTFN 213
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
++ISG + G ++A+ ++ EM++ + PD VT+ +L+AC+ DL G + S++ K
Sbjct: 214 TLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKA 273
Query: 250 GIKMDLTFE 258
G+ +D E
Sbjct: 274 GMSLDYIME 282
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 18/213 (8%)
Query: 38 QLKRIHAQMLSTDFFFDPY---SASKLFTPCALS--TFSSLEYARKMFDQIPQPNLYTWN 92
Q +IHA++ + + D L+ C +S FSS F+ I TWN
Sbjct: 464 QGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSS-------FEAIEHKEGITWN 516
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
LI ++ S ++ +F+++ + N FT I A+A + G+ IH
Sbjct: 517 GLISGFAQSGLYEEALKVFMKMDQAGAKY-NVFTFVSSISASANLADIKQGKQIHARVIK 575
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ + ISN+LI Y CG + A F + K++ VSWN++I+ + G +A++L
Sbjct: 576 TGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDL 635
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ +M+ + +KP +VT V VL+AC+ +E G+
Sbjct: 636 FDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGL 668
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%)
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+I N LI YA G + A VF + +D VSW +++SG+ + G E+A+ LYREM
Sbjct: 78 IIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRS 137
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
V P + +LSAC K + G + + K G
Sbjct: 138 GVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQG 173
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 90/214 (42%), Gaps = 31/214 (14%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + KQ K+IHA+++ T + + ++ L + S+E A+ F ++ + N +WN
Sbjct: 560 LADIKQGKQIHARVIKTGYTSETEISNALIS--LYGKCGSIEDAKMDFFEMTKRNEVSWN 617
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
T+I S +++ +F Q+ P++ T V+ A + G+ E+
Sbjct: 618 TIITCCSQHGRGLEALDLFDQM-KQQGLKPSDVTFVGVLTACSHV----------GLVEE 666
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
L S+ + + + CV ++G+ G ++A EM
Sbjct: 667 GLCYFKSMSNEHGIHPRPDHYACVVDILGR---------------AGQLDRAKRFVEEMP 711
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+ D + +LSAC ++LE G + + H+
Sbjct: 712 I---PADSMVWRTLLSACKVHKNLEIGEFAAKHL 742
>gi|218192568|gb|EEC74995.1| hypothetical protein OsI_11055 [Oryza sativa Indica Group]
Length = 1018
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 129/232 (55%), Gaps = 21/232 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IHA++++ + ASKL + S L AR++FD IPQP+L+ WN ++ + S
Sbjct: 34 RQIHARLVAASVTPSNFLASKLIS--LYSRADRLRDARRVFDSIPQPSLFAWNAILISLS 91
Query: 100 -SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK--AAARP-VQFRVGQAIHGM-----F 150
S +P + +F +S P+E TL +++ AA+ P + V +H + F
Sbjct: 92 LHSPDPSAAVRLF----ASSAVSPDEITLSTLLRSLAASGPALSPLVTGELHAVAFLWGF 147
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
DL +SN+LI YA GD+ A VF + ++DVVSWNS+IS G++ + ++L++E
Sbjct: 148 GSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLISACARAGWYRECLDLFQE 207
Query: 211 M------EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ + V P+ VT+ VL ACA+ + ++FGI V ++G+ MD+
Sbjct: 208 FVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRFAAESGLDMDMA 259
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 6/164 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E ++F Q + WN++I + + LQ + S PN TL V+
Sbjct: 267 VEEGMQLFRQASARGISMWNSVIAGLVQNGRQ-SDVLRLLQEMIASKVLPNSATLSIVMP 325
Query: 133 AAAR-----PVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ + G AI ++ + + ++LI YA G L A VF + + +
Sbjct: 326 SVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSALIDAYAKAGFLDTARKVFKLTEHRSTIV 385
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
W S+IS G +A+ L+ +M KPD VT VLSACA
Sbjct: 386 WTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLSACA 429
>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 701
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 14/250 (5%)
Query: 1 METLSTPVISIPRHPNPTTLTVNN--GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYS- 57
M +LS P RH P+ L + H + H L + + + + + Y+
Sbjct: 101 MRSLSVPP---NRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAK 157
Query: 58 ---ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
A K+F S ++ +K+FD +P ++ +WNT+I ++ + +++ + ++
Sbjct: 158 FHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREM 217
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGD 169
N P+ FTL ++ A V G+ IHG F+ D+ I +SLI YA C
Sbjct: 218 GKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNR 277
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L + F ++ +KD +SWNS+I+G V+ G F++ + +R M ENVKP V+ V+ A
Sbjct: 278 LECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPA 337
Query: 230 CAKKRDLEFG 239
CA L G
Sbjct: 338 CAHLTALSLG 347
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH + F D + S L A + LE + + F +P+ + +WN++I
Sbjct: 247 KEIHGYAVRNGFDGDVFIGSSLIDMYA--KCNRLECSLRAFYILPRKDAISWNSIIAGCV 304
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ E + F +++ + P + VI A A +G+ +HG F+D+
Sbjct: 305 QNGEFDRGLGFFRRMLKENVK-PMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNE 363
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I++SL+ YA CG++ MA VF I K+D+V+W ++I G G A+ L+ M +
Sbjct: 364 FIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLED 423
Query: 215 NVKPDEVTMVVVLSACA 231
V+P V + VL+AC+
Sbjct: 424 GVRPCYVAFMAVLTACS 440
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 126/265 (47%), Gaps = 30/265 (11%)
Query: 16 NPTTLTVNNGHQRHPH--FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL 73
N T T++ ++ P+ + +Q K++HA ++ T + + S + L
Sbjct: 3 NSTQHTISKILRKTPNKTLSVSTRQAKQLHAHIVKTK---GTLHSDNILVLSLYSNLNLL 59
Query: 74 EYARKMFDQIPQPNLY-TWNTLIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVI 131
+++ +F+ +P P W+++I+ Y+S SF F + S P PN P ++
Sbjct: 60 QHSLHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVP--PNRHVFPSLL 117
Query: 132 KAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAY------------ 174
KA+ ++ ++H + DL I+N+LI+ YA + +
Sbjct: 118 KASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGID 177
Query: 175 CV---FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSAC 230
CV F M+ +DVVSWN++I+GF + G + +A+++ REM + +KPD T+ +L
Sbjct: 178 CVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIF 237
Query: 231 AKKRDLEFGIWVSSHIEKNGIKMDL 255
A+ D+ G + + +NG D+
Sbjct: 238 AEHVDVNKGKEIHGYAVRNGFDGDV 262
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 9/209 (4%)
Query: 10 SIPRHPNPTTLTVNNG-HQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTP-CAL 67
+I N TL +N+ Q+ TN KQ +IH Q+ F P++AS+ CA
Sbjct: 44 TISNSSNAPTLDLNHPILQKLEQSCTNIKQFNQIHTQLTVLGLFQHPFAASRYIKKLCA- 102
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+S+ + +++ I +P+ + NT++R++ + ++P + + + + PN +T
Sbjct: 103 -CLNSVSHCVSLYNHIEEPDAFMCNTIMRSFVNVNDPFGALRFYYEKMIAKWVLPNHYTF 161
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
P V K A R GQ +H + FE DL + NS I FY+VCG + A VF
Sbjct: 162 PLVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTSDARMVFDNGFV 221
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+VSWNSMI G+V+ G A E++ EM
Sbjct: 222 LDLVSWNSMIDGYVKNGELGLAREIFDEM 250
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%)
Query: 65 CALSTFSSLE---YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
C + F+ ++ A K FD++P N+ +WN ++ Y + + F ++ +
Sbjct: 291 CMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRC-KKYSDCLRFFDMMVGGDFV 349
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCV 176
P+E +L V+ A A G+ +H +D D+++S +L+ YA CG + +A V
Sbjct: 350 PDEASLVSVLTACAELKMLDQGKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMDLAREV 409
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + +K VVSWNSMI G+ G +KA+E++REME P++ T + VLSAC+ +
Sbjct: 410 FDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLSACSHSGMV 469
Query: 237 EFGIW 241
G W
Sbjct: 470 WNGWW 474
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 114/226 (50%), Gaps = 20/226 (8%)
Query: 37 KQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
++ +++HA ++ F D + S + ++ C ++ AR +FD +L +WN+
Sbjct: 175 REGQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTS-----DARMVFDNGFVLDLVSWNS 229
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED- 152
+I Y + E + + +++ Y + FT +I V +A G+F+
Sbjct: 230 MIDGYVKNGE-----LGLAREIFDEMYERDIFTWNSMISGY---VGVGDMEAARGLFDKM 281
Query: 153 ---DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
D+V N +I +A D++MA F + ++VVSWN M++ ++ + + +
Sbjct: 282 PSRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFD 341
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M + PDE ++V VL+ACA+ + L+ G WV S+++ NGIK D+
Sbjct: 342 MMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDNGIKPDM 387
>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Glycine max]
Length = 611
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 109/234 (46%), Gaps = 44/234 (18%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL---EYARKMFDQIPQPNLYTWNT 93
KQ K++HA+ FF P+S + + ++ +Y R +FD I N +W T
Sbjct: 123 KQGKQVHAR-----FFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTT 177
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPY-------------------------------FP 122
+I Y+ S ++F +F Q Y + +
Sbjct: 178 MISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVT 237
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
+ L V+ A A + +G+ +HG+ +E L ISN+LI YA C DL A +F
Sbjct: 238 DPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIF 297
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ +KDVVSW S+I G + G E+A+ LY EM + VKP+EVT V ++ AC+
Sbjct: 298 CEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACS 351
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
I N+L++ Y CG + A +F + ++D V+W S+++ +A+ + R +
Sbjct: 40 IPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTG 99
Query: 216 VKPDEVTMVVVLSACA 231
PD ++ ACA
Sbjct: 100 FHPDHFVFASLVKACA 115
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 112/200 (56%), Gaps = 6/200 (3%)
Query: 46 MLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI 105
M+ T DP+ + L + A + ++L ++ +F QIP P+L+ +N +IRA+S S P
Sbjct: 1 MVVTGRHHDPFLMTPLISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPH 60
Query: 106 QSFMIFLQLVYNSP-YFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNS 159
+ ++ +++ +SP FP+ FT PF++K+ A+ R+G +H FE ++ + N+
Sbjct: 61 NALSLYKKMLSSSPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNA 120
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
L+ Y V GD A VF +D VS+N++I+G V G ++ ++ EM V+PD
Sbjct: 121 LLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPD 180
Query: 220 EVTMVVVLSACAKKRDLEFG 239
E T V +LSAC+ D G
Sbjct: 181 EYTFVALLSACSLLEDRGIG 200
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 40/210 (19%)
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
F A ++FD+ P + ++NT+I + S IF ++ P+E+T
Sbjct: 127 VFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEM-RGGFVEPDEYTFV 185
Query: 129 FVIKAAARPVQFRVGQAIHGM-------FEDDLVISNSLIHFYAVCGDLAMAYCV----- 176
++ A + +G+ +HG+ F ++ ++ N+L+ YA CG L +A V
Sbjct: 186 ALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERVVRNGN 245
Query: 177 ---------------------------FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F +G++DVVSW +MISG+ G F++A+EL+
Sbjct: 246 GKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFV 305
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
E+E ++PDEV +V LSACA+ LE G
Sbjct: 306 ELEDLGMEPDEVVVVAALSACARLGALELG 335
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 10/183 (5%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + +E AR++FDQ+ + ++ +W +I Y + ++ +F++L + P+E
Sbjct: 259 AYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVEL-EDLGMEPDEV 317
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDD-------LVISNSLIHFYAVCGDLAMAYCVFV 178
+ + A AR +G+ IH ++ D + +++ YA CG + A VF+
Sbjct: 318 VVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVFL 377
Query: 179 MIGK--KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
K +NS++SG G E A+ L+ EM + ++PDEVT V +L AC +
Sbjct: 378 KTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLCACGHSGLV 437
Query: 237 EFG 239
+ G
Sbjct: 438 DHG 440
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 15/230 (6%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE---YARKMFDQI-PQPNLYT 90
N QL+ +H+ ++++ S S +F+ +S ++ ++ + +F I P N+Y
Sbjct: 34 NTPQLRTVHSLIITSGL-----SLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYL 88
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
WN++IRA + + Q+ + ++ P+ FT P VI + AR + +G +H
Sbjct: 89 WNSIIRALTHNGLFTQALGYYTEM-REKKLQPDAFTFPSVINSCARILDLELGCIVHEHA 147
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
FE DL I N+LI Y+ DL A VF + +D VSWNS+ISG+ GF+E A+
Sbjct: 148 MEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDAL 207
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++Y + + + PD TM VL AC ++ G+ V IEK GI D+
Sbjct: 208 DMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDV 257
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 15/221 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H + F D Y + L S F L+ AR +F+++ + +WN+LI Y S+
Sbjct: 143 VHEHAMEMGFESDLYIGNALID--MYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSN 200
Query: 102 ---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DD 153
++ + + F + P+ FT+ V+ A + + G A+HG+ E D
Sbjct: 201 GFWEDALDMYHKFRM----TGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGD 256
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
++I N L+ Y L A VF + KD V+WN+MI G+ + G E +++L+ +M +
Sbjct: 257 VIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-I 315
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ PD +++ + AC + DL+ G +V ++ +G + D
Sbjct: 316 DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECD 356
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
K+F + ++ +WNT+I + D+ F + ++ P+E T+ ++ +
Sbjct: 478 KVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEM-RTEGLMPDEATVLGILPMCSLL 536
Query: 138 VQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
R G+ IHG FE ++ I N+LI Y+ CG L VF + +KDVV+W ++I
Sbjct: 537 AVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALI 596
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
S F G +KA++ +++ME+ V PD V + + AC+
Sbjct: 597 SAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACS 635
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 21/222 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H ++ + F D + + ++ C L A+++FD + TWN+LI
Sbjct: 342 KFVHKYLIGSGFECDTVACNILIDMYAKCG-----DLLAAQEVFDTTKCKDSVTWNSLIN 396
Query: 97 AYSSSD---EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG----- 148
Y+ S E ++SF + P+ T ++ ++ G+ IH
Sbjct: 397 GYTQSGYYKEGLESFKMM-----KMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKF 451
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
FE +L+I NSL+ YA CG++ VF + D++SWN++I+ V ++
Sbjct: 452 GFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMI 511
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
EM E + PDE T++ +L C+ G + +I K+G
Sbjct: 512 NEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSG 553
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 14/227 (6%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNL 88
+L KQ + IHA + S+ F D + ++ C SLE A+ +FD++P ++
Sbjct: 117 YLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCG-----SLEEAQDLFDKMPTKDM 171
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+W LI YS S + ++ +F ++++ + PNEFTL ++KA+ G+ +H
Sbjct: 172 VSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSLLKASGTGPSDHHGRQLHA 230
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
++ ++ + +SL+ YA + A +F + K+VVSWN++I+G G E
Sbjct: 231 FSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEH 290
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ L+ +M + +P T V +ACA LE G WV +H+ K+G
Sbjct: 291 VMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSG 337
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 110/218 (50%), Gaps = 8/218 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++HA L + + + S L A ++ + A+ +F+ + N+ +WN LI ++
Sbjct: 226 RQLHAFSLKYGYDMNVHVGSSLLDMYA--RWAHMREAKVIFNSLAAKNVVSWNALIAGHA 283
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDL 154
E +FLQ++ + P FT V A A G+ +H +
Sbjct: 284 RKGEGEHVMRLFLQMLRQG-FEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIA 342
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I N+LI YA G + A VF + K+D+VSWNS+ISG+ + G +A++L+ +M
Sbjct: 343 YIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKA 402
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
V+P+E+T + VL+AC+ L+ G + ++K+ I+
Sbjct: 403 KVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIE 440
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 126/258 (48%), Gaps = 28/258 (10%)
Query: 12 PRHPNPTTLTVNNGHQRHP---HF--LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCA 66
P+ P P Q+HP H T+ + L ++HA + P ++L T C
Sbjct: 18 PKSPPP---------QQHPVLSHLPHCTSLRTLAQLHAAAVKAGLAAHPALVTRLLTLCT 68
Query: 67 L--STFSSLEYARKMFDQIPQPNLYTW-NTLIRAYS-----SSDEPIQSFMIFLQLVYNS 118
+ + L YAR++FD++P P W NTL+R Y+ SS E + +F++++
Sbjct: 69 GPDAGPAHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEG 128
Query: 119 PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMA 173
P+ +T ++KA A G+ H + D + +LI+ YA CGD A
Sbjct: 129 -VAPDTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAA 187
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+F VVS+N+MI+ V +A+ L+REM+ + +KP VT++ VLSACA
Sbjct: 188 RVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALL 247
Query: 234 RDLEFGIWVSSHIEKNGI 251
LE G WV ++ K G+
Sbjct: 248 GALELGRWVHDYVRKIGL 265
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 6/181 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR MF + ++N +I A S P ++ ++F ++ P T+ V+ A A
Sbjct: 187 ARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREM-QGKGLKPTSVTVISVLSACA 245
Query: 136 RPVQFRVGQAIHGMFE----DDLV-ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ +H LV +S +LI YA CG L A VF + KD +W+
Sbjct: 246 LLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSV 305
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI + G+ +AI L+ EM+ E +KPD++T + VL AC+ + G+ ++ +G
Sbjct: 306 MIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMKDHG 365
Query: 251 I 251
I
Sbjct: 366 I 366
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 15/230 (6%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE---YARKMFDQI-PQPNLYT 90
N QL+ +H+ ++++ S S +F+ +S ++ ++ + +F I P N+Y
Sbjct: 34 NTPQLRTVHSLIITSGL-----SLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYL 88
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
WN++IRA + + Q+ + ++ P+ FT P VI + AR + +G +H
Sbjct: 89 WNSIIRALTHNGLFTQALGYYTEM-REKKLQPDAFTFPSVINSCARILDLELGCIVHEHA 147
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
FE DL I N+LI Y+ DL A VF + +D VSWNS+ISG+ GF+E A+
Sbjct: 148 MEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDAL 207
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++Y + + + PD TM VL AC ++ G+ V IEK GI D+
Sbjct: 208 DMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDV 257
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 15/221 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H + F D Y + L S F L+ AR +F+++ + +WN+LI Y S+
Sbjct: 143 VHEHAMEMGFESDLYIGNALID--MYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSN 200
Query: 102 ---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DD 153
++ + + F + P+ FT+ V+ A + + G A+HG+ E D
Sbjct: 201 GFWEDALDMYHKFRM----TGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGD 256
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
++I N L+ Y L A VF + KD V+WN+MI G+ + G E +++L+ +M +
Sbjct: 257 VIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-I 315
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ PD +++ + AC + DL+ G +V ++ +G + D
Sbjct: 316 DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECD 356
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
K+F + ++ +WNT+I + D+ F + ++ P+E T+ ++ +
Sbjct: 478 KVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEM-RTEGLMPDEATVLGILPMCSLL 536
Query: 138 VQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
R G+ IHG FE ++ I N+LI Y+ CG L VF + +KDVV+W ++I
Sbjct: 537 AVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALI 596
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
S F G +KA++ +++ME+ V PD V + + AC+
Sbjct: 597 SAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACS 635
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 21/222 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H ++ + F D + + ++ C L A+++FD + TWN+LI
Sbjct: 342 KFVHKYLIGSGFECDTVACNILIDMYAKCG-----DLLAAQEVFDTTKCKDSVTWNSLIN 396
Query: 97 AYSSSD---EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG----- 148
Y+ S E ++SF + P+ T ++ ++ G+ IH
Sbjct: 397 GYTQSGYYKEGLESFKMM-----KMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKF 451
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
FE +L+I NSL+ YA CG++ VF + D++SWN++I+ V ++
Sbjct: 452 GFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMI 511
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
EM E + PDE T++ +L C+ G + +I K+G
Sbjct: 512 NEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSG 553
>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 793
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 124/230 (53%), Gaps = 11/230 (4%)
Query: 33 LTNQKQLKRIHAQM--LSTDFFFDPYS-ASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + K +H + L +++ D Y +S +F L LE+A+K+FD + N
Sbjct: 199 LGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGC---LEFAKKVFDNCLERNTE 255
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
WNT+I A+ ++ ++ +F Q V + +E TL I AA+ +F + + +H
Sbjct: 256 VWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAF 315
Query: 150 FEDDLVIS-----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
++ ++ N+LI Y+ C + ++ +F + +KDVVSWN+MIS FV+ G ++A
Sbjct: 316 VIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEA 375
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ L+ EM+ +++ D VT+ +LSA + R+ + G ++ +NGI+ +
Sbjct: 376 LMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE 425
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 112/225 (49%), Gaps = 25/225 (11%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI- 83
G Q H + L N Q + + + + D Y+ S L +E A+ +F++
Sbjct: 410 GKQTHGYLLRNGIQFEGMDS------YLIDMYAKSGL-----------IEAAQNVFEKSF 452
Query: 84 -PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+ + TWN+++ Y+ + Q+F+I Q++ + PN TL ++ A
Sbjct: 453 SHERDQATWNSMMSGYTQNGLVDQAFLILRQML-DQKVMPNVVTLASILPACNPSGYIDW 511
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ +HG + ++ ++ +LI Y+ G +A A VF +K +V++++MI G+ +
Sbjct: 512 GKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQ 571
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
G E A+ ++ M+ ++PD VT+V VLSAC+ ++ G+ +
Sbjct: 572 HGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQI 616
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-N 123
C L L AR++FD +P+P+ WNT+I ++ P ++ + + + +SP +
Sbjct: 12 CRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCD 71
Query: 124 EFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-----VISNSLIHFYAVC------GDLAM 172
+T V+KA A VG+A+H F L ++ NSL++ Y++C G +
Sbjct: 72 SYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVS 131
Query: 173 AYC-------VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
Y VF + K+ VV+WN++I+ +V + +A++ + M +KP V+ V
Sbjct: 132 GYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVN 191
Query: 226 VLSACAKKRDLE 237
V A + D +
Sbjct: 192 VFPAFSSLGDFK 203
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 93/178 (52%), Gaps = 7/178 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +S++ + K+FD +P+ ++ +WNT+I A+ + ++ M+F ++ + T+
Sbjct: 336 SRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEM-KKQDLMVDSVTV 394
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLV----ISNSLIHFYAVCGDLAMAYCVF--VMIG 181
++ AA+ +G+ HG + + + + LI YA G + A VF
Sbjct: 395 TALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSH 454
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++D +WNSM+SG+ + G ++A + R+M + V P+ VT+ +L AC +++G
Sbjct: 455 ERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWG 512
>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 764
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 112/216 (51%), Gaps = 8/216 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H Q+L T F D + + L +++ A +MF++ ++ W +I +
Sbjct: 290 LHGQILRTCFDLDAHVETSLIV--MYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQN 347
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFED----DLVI 156
++ +F Q++ + T+ VI A A+ + +G ++HG MF D+
Sbjct: 348 GSADKALAVFRQML-KFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIAT 406
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
NSL+ +A CG L + VF + K+++VSWN+MI+G+ + G+ KA+ L+ EM ++
Sbjct: 407 QNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQ 466
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
PD +T+V +L CA L G W+ S + +NG++
Sbjct: 467 TPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLR 502
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 104/190 (54%), Gaps = 6/190 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
++EY+RK+FD + Q +L +WN+L+ AY+ I ++ L+ + + P+ T V+
Sbjct: 217 NIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGY-ICEVLLLLKTMRIQGFEPDPQTFGSVL 275
Query: 132 KAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
AA + ++G+ +HG F+ D + SLI Y G++ +A+ +F KDVV
Sbjct: 276 SVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVV 335
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
W +MISG V+ G +KA+ ++R+M VK TM V++ACA+ G V ++
Sbjct: 336 LWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYM 395
Query: 247 EKNGIKMDLT 256
++ + MD+
Sbjct: 396 FRHELPMDIA 405
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 5/219 (2%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++L + D Y AS L A F + ARK+FD +P+ N+ W ++I YS +
Sbjct: 91 LHQRILVSGLSLDAYIASSLINFYA--KFGFADVARKVFDFMPERNVVPWTSIIGCYSRT 148
Query: 102 DEPIQSFMIFLQLVYNS--PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS 159
++F +F ++ P +L F + A VQ G AI F D+ +SNS
Sbjct: 149 GRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSELAH-VQCLHGSAILYGFMSDINLSNS 207
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
++ Y C ++ + +F + ++D+VSWNS++S + + G+ + + L + M ++ +PD
Sbjct: 208 MLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPD 267
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
T VLS A + +L+ G + I + +D E
Sbjct: 268 PQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVE 306
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 99/204 (48%), Gaps = 8/204 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H M + D + + L T A L+ + +FD++ + NL +WN +I Y+ +
Sbjct: 391 VHGYMFRHELPMDIATQNSLVTMHA--KCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQN 448
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVI 156
++ +F ++ + P+ T+ +++ A Q +G+ IH + +++
Sbjct: 449 GYVCKALFLFNEMRSDHQT-PDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILV 507
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
SL+ Y CGDL +A F + D+VSW+++I G+ G E A+ Y + +
Sbjct: 508 DTSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGM 567
Query: 217 KPDEVTMVVVLSACAKKRDLEFGI 240
KP+ V + VLS+C+ +E G+
Sbjct: 568 KPNHVIFLSVLSSCSHNGLVEQGL 591
>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
Length = 624
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 14/227 (6%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
N ++IH + S+ F D + S L+ C S+ A K+FD++ + ++ +W
Sbjct: 66 NLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCG-----SVVEAHKVFDKMRKKDMVSW 120
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+LI Y+ +D P ++ + ++ + PN FT ++KAA +G IH +
Sbjct: 121 TSLIAGYAQNDMPAEAIGLLPGML-KGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAV 179
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+ +D+ + ++L+ YA CG + MA VF + K+ VSWN++ISGF G E A+
Sbjct: 180 KCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALM 239
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
++ EM+ + T + S A LE G WV +H+ K+ K+
Sbjct: 240 VFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKL 286
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 8/196 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IHA + D+ D Y S L A ++ A +FD++ N +WN LI ++
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARC--GKMDMATAVFDKLDSKNGVSWNALISGFAR 230
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LV 155
+ + M+F ++ N + FT + A G+ +H
Sbjct: 231 KGDGETALMVFAEMQRNG-FEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAF 289
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ N+++ YA G + A VF + KD+V+WNSM++ F + G ++A+ + EM
Sbjct: 290 VGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSG 349
Query: 216 VKPDEVTMVVVLSACA 231
+ +++T + +L+AC+
Sbjct: 350 IYLNQITFLCILTACS 365
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 129/263 (49%), Gaps = 23/263 (8%)
Query: 13 RHPNPTTLTVNNGHQRHP---------HFLTN--QKQL----KRIHAQMLSTDFFFDPYS 57
RH P V+N HQ P L N +K+L KRIHAQM+ D +
Sbjct: 5 RHCGPDREDVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIF- 63
Query: 58 ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117
S L + S L+ A ++F ++P+ ++ +WN+LI Y+ ++F +F ++ N
Sbjct: 64 LSNLLINMYVKCRSVLD-AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM-QN 121
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAM 172
+ + PN+ T ++ A P + G+ IH ++ D + NSL+ Y CGDL
Sbjct: 122 AGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPR 181
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
A VF I +DVVS+N+M+ + + + ++ + L+ +M E + PD+VT + +L A
Sbjct: 182 ARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTT 241
Query: 233 KRDLEFGIWVSSHIEKNGIKMDL 255
L+ G + + G+ D+
Sbjct: 242 PSMLDEGKRIHKLTVEEGLNSDI 264
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 102/192 (53%), Gaps = 6/192 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L AR++F +P+ +L +WN +I Y+ ++ ++ ++ Q+ + P T +
Sbjct: 379 GDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM-QSEGVKPGRVTFLHL 437
Query: 131 IKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A + G+ IH + + ++N+L++ Y CG L A VF +DV
Sbjct: 438 LSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDV 497
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+SWNSMI+G + G +E A +L++EM+ E ++PD +T VLS C LE G +
Sbjct: 498 ISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGR 557
Query: 246 IEKNGIKMDLTF 257
I ++G+++D+
Sbjct: 558 ITESGLQLDVNL 569
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
KRIH + D + L T C ++ A++ F I ++ +N LI A +
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCV--RCGDVDSAKQAFKGIADRDVVVYNALIAALA 306
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----L 154
+++F + ++ + N T ++ A + G+ IH +D +
Sbjct: 307 QHGHNVEAFEQYYRMRSDGVAL-NRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDV 365
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I N+LI YA CGDL A +F + K+D++SWN++I+G+ +A+ LY++M+ E
Sbjct: 366 QIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSE 425
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
VKP VT + +LSACA G + I ++GIK
Sbjct: 426 GVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIK 463
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 9/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH +L + + + A+ L SL A+ +F+ ++ +WN++I ++
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMN--MYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA 508
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
++ +F Q + N P+ T V+ P +G+ IHG + D+
Sbjct: 509 QHGSYETAYKLF-QEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDV 567
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+LI+ Y CG L A VF + +DV+SW +MI G + G KAIEL+ +M+ E
Sbjct: 568 NLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNE 627
Query: 215 NVK-PDEVTMVVVLSAC 230
+ PD T +LSAC
Sbjct: 628 GFRPPDGSTFTSILSAC 644
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 8/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH+Q++ + DP + L + L AR++F I ++ ++NT++ Y+
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLS--MYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ +F Q+ + P++ T ++ A P G+ IH + D+
Sbjct: 206 QKAYVKECLGLFGQMS-SEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDI 264
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +L+ CGD+ A F I +DVV +N++I+ + G +A E Y M +
Sbjct: 265 RVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSD 324
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V + T + +L+AC+ + LE G + SHI ++G D+
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDV 365
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 109/204 (53%), Gaps = 6/204 (2%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
L +HA + D + S L A L+ R++FD++ +L WN++I +
Sbjct: 198 LAALHASTVKVGLDSDVFVRSSLID--AYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGF 255
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---MFEDDLV 155
+ S + + + +F+++ ++ + N+ TL V++A V G+ +H +E DL+
Sbjct: 256 AQSGDGVGAIELFMRM-KDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLKYERDLI 314
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ N+L+ Y CG L A +F + ++DV+SW++MISG + G +A+ ++ M+ E
Sbjct: 315 LHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEG 374
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG 239
V P+ +TMV VL AC+ +E G
Sbjct: 375 VAPNRITMVGVLFACSHAGLVEDG 398
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 8/186 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F L+ A ++FD++P+ N+ TW T++ A +++D + + FL ++ PN +T
Sbjct: 126 AKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTF 185
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A P V A+H + D+ + +SLI Y GDL VF +
Sbjct: 186 SSVLGACGTP---GVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVT 242
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+D+V WNS+I+GF + G AIEL+ M+ ++ T+ VL AC LE G V
Sbjct: 243 RDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQV 302
Query: 243 SSHIEK 248
+H+ K
Sbjct: 303 HAHVLK 308
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 47/224 (20%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
G Q H H L ++ L +H +L ++ C SLE A +F ++P
Sbjct: 299 GRQVHAHVLKYERDLI-LHNALLD------------MYCKCG-----SLEDAEALFHRMP 340
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
Q ++ +W+T+I + + + ++ +F L+ + PN T+ V+ A +
Sbjct: 341 QRDVISWSTMISGLAQNGKSAEALRVF-DLMKSEGVAPNRITMVGVLFACSHA------- 392
Query: 145 AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
G+ ED S+ + + + C+ ++G+ G ++A
Sbjct: 393 ---GLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGR---------------AGKLDEA 434
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+E R+M N++PD V +L AC + + + I K
Sbjct: 435 VEFIRDM---NLEPDAVIWRTLLGACRMHKSGNLAAYAAREILK 475
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 31/185 (16%)
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-------------- 122
+ +F + P+ L R + P S IF +L P FP
Sbjct: 10 KSLFKRPPRNRLAATRRSSRPVHTQPPPHPSLAIFSRLCVEGP-FPAALALLPDLAAAGL 68
Query: 123 --NEFTLPFVIKAAARPVQFRVGQAIH-------------GMFEDDLVISNSLIHFYAVC 167
+ +L ++K R G+ IH G + +SNSL+ YA
Sbjct: 69 RADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKF 128
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEG-GFFEKAIELYREMEVENVKPDEVTMVVV 226
G L A +F + +++VV+W ++++ G E+A+ M + V P+ T V
Sbjct: 129 GLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSV 188
Query: 227 LSACA 231
L AC
Sbjct: 189 LGACG 193
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
+++ AR FD++P+ ++ W+T+I YS + P +S +F ++ + PNE TL V+
Sbjct: 355 AIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATN-CKPNEVTLVGVL 413
Query: 132 KAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A A+ +G+ I E + + ++LI Y CG +A A VF + +K VV
Sbjct: 414 SACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVV 473
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+WNSMI G GF E AI LYR+M + ++P+EVT V +L+AC ++ GI
Sbjct: 474 TWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGI 527
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 26/252 (10%)
Query: 24 NGHQRHPHFLTNQKQLKRIHAQMLSTDFFF------------------DPYSASKLFTPC 65
G Q H H L + L + Q DF+ DP + L T
Sbjct: 192 QGSQTHCHALV-RGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLIT-- 248
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
S +E AR++FD +P+ +WN++I Y+ E ++ +F Q++ PN
Sbjct: 249 GYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGAS-PNAI 307
Query: 126 TLPFVIKAAARPVQFRVGQAIHG-MFEDDL---VISNSLIHFYAVCGDLAMAYCVFVMIG 181
T+ V A+ G+ + E+DL ++ +L+ Y C + A F +
Sbjct: 308 TITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMP 367
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
++DVV+W++MI+G+ + G +++EL+ M+ N KP+EVT+V VLSACA+ E G
Sbjct: 368 RRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQ 427
Query: 242 VSSHIEKNGIKM 253
+ ++IE + +
Sbjct: 428 IGNYIESQTLPL 439
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 88/223 (39%), Gaps = 39/223 (17%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
LS S+ AR +FD +P+P + S + + L P+
Sbjct: 118 LSNASTYRAARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSG-C 176
Query: 127 LPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+P V+K+ A+ G H GM D+ + +L+ FYA GD+ A F +
Sbjct: 177 IPLVLKSCAQSAASCQGSQTHCHALVRGML-GDVFVQTALVDFYAKNGDMDSALMAFKEM 235
Query: 181 GKKDVV-------------------------------SWNSMISGFVEGGFFEKAIELYR 209
KD + SWNSMI+ + GG F +A+ L+
Sbjct: 236 PVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFD 295
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+M E P+ +T+ V S CAK DL+ G + I + ++
Sbjct: 296 QMLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQ 338
>gi|255564460|ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537522|gb|EEF39147.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 488
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 127/237 (53%), Gaps = 28/237 (11%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKL---------FTPCALSTFSSLEYARKMFDQIPQPNL 88
L+ +HA++L T + + +SKL TP +LSTF +P N+
Sbjct: 52 HLRHLHARLLRTSLYDNVVLSSKLVLMYSHHNRLTPHSLSTFF----------HMPCKNI 101
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
Y+WN +I ++ S+ P +S +F+ + +S + P++F+LP V++A A ++G ++HG
Sbjct: 102 YSWNIIIGEFARSNLPEKSVDLFIDMRRDSHFQPDDFSLPLVLRACAGSGLGKLGSSVHG 161
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
+ L + ++L+ Y G+++ A VF + K+D V W +++SG+ + G +
Sbjct: 162 LCVKMGLAVSLFVGSALVFMYVTFGNVSNARVVFDEMAKRDSVLWTALLSGYAQNGEPKL 221
Query: 204 AIELYREMEVEN---VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
++++REM V+N VK D V MV +L C + L+ G V +N ++++L+
Sbjct: 222 GLQVFREM-VDNSTRVKLDWVVMVSLLLVCGQLGSLKHGKSVHGWCVRNCLRLELSL 277
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 96/184 (52%), Gaps = 10/184 (5%)
Query: 58 ASKLFTPCALS----TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
A LF AL TF ++ AR +FD++ + + W L+ Y+ + EP +F +
Sbjct: 169 AVSLFVGSALVFMYVTFGNVSNARVVFDEMAKRDSVLWTALLSGYAQNGEPKLGLQVFRE 228
Query: 114 LVYNSPYFPNEFTLPF-VIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVC 167
+V NS ++ + ++ + + G+++HG +L + N+++H Y C
Sbjct: 229 MVDNSTRVKLDWVVMVSLLLVCGQLGSLKHGKSVHGWCVRNCLRLELSLGNAIVHMYIKC 288
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G LA A+ F + ++DV SW+S+I G+ G A+ L+ +M + +KP++VT + +L
Sbjct: 289 GMLAYAHRFFDKMPERDVFSWSSLILGYGLSGNVSVALCLFDQMHMRGIKPNDVTFLGIL 348
Query: 228 SACA 231
SAC
Sbjct: 349 SACG 352
>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 831
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 122/242 (50%), Gaps = 12/242 (4%)
Query: 13 RHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS 72
++P+ TTL + L KQ +HA F+ D Y AS L S
Sbjct: 414 QNPDRTTLAIILSSCAELGLLEAGKQ---VHAVSQKLGFYDDVYVASSLIN--VYSKCGK 468
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E ++ +F ++ + ++ WN++I +S + + F ++ +FP+EF+ +
Sbjct: 469 MEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDALACFKRM-RQFGFFPSEFSFATIAS 527
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ A+ GQ IH + D++ + +SL+ Y CGD+ A F M+ K++V+
Sbjct: 528 SCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVT 587
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV-SSHI 246
WN MI G+ G+ +A+ LY++M KPD++T V VL+AC+ ++ G+ + SS +
Sbjct: 588 WNEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTACSHSALVDEGVEIFSSML 647
Query: 247 EK 248
+K
Sbjct: 648 QK 649
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 26/220 (11%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+R H +L F + Y ++ L +T C L+ E A ++F+ I +PN T+ T++
Sbjct: 158 RRNHGLVLKVGFDSNIYVSNALLCMYTKCGLN-----EDAFRVFEGIVEPNEVTFTTMMG 212
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV------------GQ 144
S +++ + +F +L+ + +L ++ A+ V F V G+
Sbjct: 213 GLSQTNQVKEGLELF-RLMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGK 271
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
IH + FE DL + NSL+ YA GD+ A VF + K VVSWN MISG+
Sbjct: 272 QIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRC 331
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
EKA+E ++ M+ +PD+VT + +L+AC K D++ G
Sbjct: 332 DSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVG 371
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D + + T C S ++ R++FD + P+L +WN ++ Y+ S + ++ +F +
Sbjct: 351 DDVTYINMLTACVKS--GDVKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRK 408
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG 168
+ + P+ TL ++ + A G+ +H + F DD+ +++SLI+ Y+ CG
Sbjct: 409 MQFQWQN-PDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCG 467
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
+ ++ VF + + DVV WNSMI+GF + A+ ++ M P E + + S
Sbjct: 468 KMEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIAS 527
Query: 229 ACAKKRDLEFGIWVSSHIEKNG 250
+CAK L G + + I K+G
Sbjct: 528 SCAKLSSLFQGQQIHAQIIKDG 549
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 42/238 (17%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IHA++ F D + + L S + + A +FD+IP N++++N ++ A+
Sbjct: 25 KIIHARIFRFTLFSDTFLCNHLID--LYSKCNQITSAHHVFDKIPHKNIFSYNAILSAFC 82
Query: 100 SSDEPIQSFMIFLQ--------------------------------LVYNSPYFPNEFTL 127
S+ + +FLQ +VY S P+ T
Sbjct: 83 KSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVK-PSHITF 141
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V A G+ HG+ F+ ++ +SN+L+ Y CG A+ VF I +
Sbjct: 142 ATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVE 201
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ V++ +M+ G + ++ +EL+R M + + D V++ +L CAK + FG+
Sbjct: 202 PNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKG--VSFGV 257
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 33/223 (14%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+ Q K+IH + F D + + L A + ++ A +F+ + + ++ +WN
Sbjct: 264 LSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKT--GDMDSAENVFENLDKHSVVSWN 321
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
+I Y + + ++ F Q + Y P++ T ++ A + +VG+ I
Sbjct: 322 IMISGYGNRCDSEKALECF-QRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQIF----- 375
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D + S SLI SWN+++SG+ + +A+EL+R+M+
Sbjct: 376 DCMSSPSLI-------------------------SWNAILSGYNQSADHGEAVELFRKMQ 410
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ PD T+ ++LS+CA+ LE G V + +K G D+
Sbjct: 411 FQWQNPDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDV 453
>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 817
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 124/230 (53%), Gaps = 11/230 (4%)
Query: 33 LTNQKQLKRIHAQM--LSTDFFFDPYS-ASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + K +H + L +++ D Y +S +F L LE+A+K+FD + N
Sbjct: 223 LGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGC---LEFAKKVFDNCLERNTE 279
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
WNT+I A+ ++ ++ +F Q V + +E TL I AA+ +F + + +H
Sbjct: 280 VWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAF 339
Query: 150 FEDDLVIS-----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
++ ++ N+LI Y+ C + ++ +F + +KDVVSWN+MIS FV+ G ++A
Sbjct: 340 VIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEA 399
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ L+ EM+ +++ D VT+ +LSA + R+ + G ++ +NGI+ +
Sbjct: 400 LMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE 449
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 112/225 (49%), Gaps = 25/225 (11%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI- 83
G Q H + L N Q + + + + D Y+ S L +E A+ +F++
Sbjct: 434 GKQTHGYLLRNGIQFEGMDS------YLIDMYAKSGL-----------IEAAQNVFEKSF 476
Query: 84 -PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+ + TWN+++ Y+ + Q+F+I Q++ + PN TL ++ A
Sbjct: 477 SHERDQATWNSMMSGYTQNGLVDQAFLILRQML-DQKVMPNVVTLASILPACNPSGYIDW 535
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ +HG + ++ ++ +LI Y+ G +A A VF +K +V++++MI G+ +
Sbjct: 536 GKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQ 595
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
G E A+ ++ M+ ++PD VT+V VLSAC+ ++ G+ +
Sbjct: 596 HGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQI 640
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 22/238 (9%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCA--LSTFSSLEYARKMFDQ 82
G H HFL RI L + YS TP +S +S + RK+FD
Sbjct: 115 GKAVHAHFLRCLMNPSRIVYNSL-----LNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDT 169
Query: 83 IPQPNLYTWNTLIRAYSSSD---EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139
+ + + WNTLI Y ++ E ++ F + +++ P+ + V A +
Sbjct: 170 MRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIK----PSPVSFVNVFPAFSSLGD 225
Query: 140 FRVGQAIHGM-------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
F+ +HGM + +DL + +S I YA G L A VF +++ WN+MI
Sbjct: 226 FKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMI 285
Query: 193 SGFVEGGFFEKAIEL-YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
S FV+ F + I+L ++ +E E+ DEVT++ +SA + + E + + + KN
Sbjct: 286 SAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKN 343
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 92/184 (50%), Gaps = 19/184 (10%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVI 131
L AR++FD +P+P+ WNT+I ++ P ++ + + + +SP + +T V+
Sbjct: 44 LHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVL 103
Query: 132 KAAARPVQFRVGQAIHGMFEDDL-----VISNSLIHFYAVC------GDLAMAYC----- 175
KA A VG+A+H F L ++ NSL++ Y++C G + Y
Sbjct: 104 KACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLV 163
Query: 176 --VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF + K+ VV+WN++I+ +V + +A++ + M +KP V+ V V A +
Sbjct: 164 RKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSL 223
Query: 234 RDLE 237
D +
Sbjct: 224 GDFK 227
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 93/178 (52%), Gaps = 7/178 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +S++ + K+FD +P+ ++ +WNT+I A+ + ++ M+F ++ + T+
Sbjct: 360 SRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEM-KKQDLMVDSVTV 418
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLV----ISNSLIHFYAVCGDLAMAYCVF--VMIG 181
++ AA+ +G+ HG + + + + LI YA G + A VF
Sbjct: 419 TALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSH 478
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++D +WNSM+SG+ + G ++A + R+M + V P+ VT+ +L AC +++G
Sbjct: 479 ERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWG 536
>gi|147844170|emb|CAN80560.1| hypothetical protein VITISV_031385 [Vitis vinifera]
Length = 730
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 7/201 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N K+ +H Q + + P+ + + T S + ++ A K F I + ++ +WNTL
Sbjct: 224 NLKRGTELHCQTVKLNLDSTPFIGNVIIT--MYSELNLIQEAEKAFRLIEEKDVISWNTL 281
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-- 152
I A S D+ + +F + + P++FT + A A G+ IH
Sbjct: 282 IAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTS 341
Query: 153 ---DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
DL + N+L++ YA CG + AY +F + ++VSWN++I+GF G E+A+EL+
Sbjct: 342 LYRDLGVDNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFE 401
Query: 210 EMEVENVKPDEVTMVVVLSAC 230
+M ++PD VT + +L+AC
Sbjct: 402 QMNAIGIRPDSVTFIGLLTAC 422
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 17/206 (8%)
Query: 42 IHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+HA +L T D + ++ ++ C +TF AR++FD++ + NL +W+ +I Y
Sbjct: 32 LHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTF-----ARQVFDEMFEKNLVSWSAMISGY 86
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ EP + ++ Q+ PNE+ VI A A GQ IH +E
Sbjct: 87 DQAGEPQMAIDLYSQMFL----VPNEYVFASVISACASLSALTQGQKIHSRSLKFGYESI 142
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+SNSLI Y C + A VF + + VS+N++I+GFVE E+ E ++ M
Sbjct: 143 SFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGFEFFKLMXQ 202
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFG 239
+ + PD + VL C +L+ G
Sbjct: 203 QGLIPDRFAFMGVLGICTTTENLKRG 228
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 7/189 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F P+PN ++N LI + + + + F F +L+ P+ F V+
Sbjct: 162 ALSVFTNTPEPNCVSYNALITGFVENQQLERGFE-FFKLMXQQGLIPDRFAFMGVLGICT 220
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G +H + I N +I Y+ + A F +I +KDV+SWN+
Sbjct: 221 TTENLKRGTELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNT 280
Query: 191 MISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+I+ K + +++ M E NV+PD+ T L+ACA + G + +H+ +
Sbjct: 281 LIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRT 340
Query: 250 GIKMDLTFE 258
+ DL +
Sbjct: 341 SLYRDLGVD 349
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 118/218 (54%), Gaps = 14/218 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
++ +R+HA M+ T + Y ++L + C LE ARK+ D++P+ N+ +W
Sbjct: 68 REGQRVHAHMIKTRYLPATYLRTRLLIFYGKC-----DCLEDARKVLDEMPEKNVVSWTA 122
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+I YS + ++ +F +++ S PNEFT V+ + R +G+ IHG+
Sbjct: 123 MISRYSQTGHSSEALSVFAEMM-RSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKW 181
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
++ + + +SL+ YA G + A +F + ++DVVS ++I+G+ + G E+A+E++
Sbjct: 182 NYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMF 241
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+ ++ E ++P+ VT +L+A + L+ G H+
Sbjct: 242 QRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHV 279
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 11/223 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH ++ ++ + S L A + +E AR++F+ +P+ ++ + +I Y+
Sbjct: 172 KQIHGLIVKWNYDSHIFVGSSLLDMYAKA--GQIEEAREIFECLPERDVVSCTAIIAGYA 229
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDL---- 154
++ +F Q + + PN T ++ A + G+ H + +L
Sbjct: 230 QLGLDEEALEMF-QRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYA 288
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ NSLI Y+ CG+L+ A +F + ++ +SWN+M+ G+ + G + +EL+R M E
Sbjct: 289 VLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDE 348
Query: 215 N-VKPDEVTMVVVLSACA--KKRDLEFGIWVSSHIEKNGIKMD 254
VKPD VT++ VLS C+ K D I+ + GIK D
Sbjct: 349 KRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPD 391
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 130 VIKAAARPVQFRVGQAIHG-MFEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
++ A R GQ +H M + + + L+ FY C L A V + +K+
Sbjct: 57 LLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 116
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VVSW +MIS + + G +A+ ++ EM + KP+E T VL++C + L G +
Sbjct: 117 VVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHG 176
Query: 245 HIEK 248
I K
Sbjct: 177 LIVK 180
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 12/189 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+++ AR +FD+IP NL WN+LI Y+ S+E +++F + + P+E T+
Sbjct: 269 GNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF----GKMQAEGFEPDEVTI 324
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A ++ G+ IH M + + N L+ YA CGDLA A +F +
Sbjct: 325 ASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAH 384
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
++ WNSMISGF G ++A+E + ME + PDE+T + VLSACA + G+ +
Sbjct: 385 RNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEI 444
Query: 243 SSHIEKNGI 251
S +EK G+
Sbjct: 445 FSRMEKYGL 453
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 117/247 (47%), Gaps = 31/247 (12%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K K +HA+ + FD + L C + ++ +RK+FD +P+ N TWN +I
Sbjct: 111 KHGKALHAESIKNGVDFDVMIGTSLV--CMYAKCGNVVDSRKVFDYMPERNAVTWNAMIC 168
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPY------------------------FPNEF----TLP 128
Y + + + ++F ++ + P+E T
Sbjct: 169 GYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWT 228
Query: 129 FVIKAAARPVQFRVGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
++ AR + + + GM + + +S+I Y G++ A +F I +++V+
Sbjct: 229 VMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVN 288
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WNS+ISG+ + GF E+A+E + +M+ E +PDEVT+ VLSAC++ L+ G + +
Sbjct: 289 WNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMN 348
Query: 248 KNGIKMD 254
GIK++
Sbjct: 349 HKGIKLN 355
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
P+L W LIR+Y S P ++ +++ L Y P V+KA A + G+A
Sbjct: 58 PSLSNWCHLIRSYLSQGAPREALLVYTGLRRKGVYLLG--VAPLVLKACASLSIVKHGKA 115
Query: 146 IHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
+H + D++I SL+ YA CG++ + VF + +++ V+WN+MI G++ G
Sbjct: 116 LHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGD 175
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ A+ L+ +M + VT + ++ A+ D E
Sbjct: 176 SKSAVLLFEKMSIRTA----VTWIEMIDGFARSGDTE 208
>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 998
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IH ++ D ++ S L S S + AR +F++I ++ W + Y+
Sbjct: 465 QIHGLIIKYGVSLDEFAGSALID--VYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQ 522
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLV 155
E +S ++ + + S PNEFT VI AA+ R GQ H F+DD
Sbjct: 523 QSENEESLKLY-KCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPF 581
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
++N+L+ YA G + A+ F+ KD WNSMI+ + + G EKA++++ +M +E
Sbjct: 582 VANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEG 641
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG 239
+KP+ VT V VLSAC+ L+ G
Sbjct: 642 LKPNYVTFVGVLSACSHTGLLDLG 665
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 118/223 (52%), Gaps = 8/223 (3%)
Query: 40 KRIHAQMLSTDFF-FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
K+IH++++ F D + + L A S + + +A K+FD + NL TW++++ Y
Sbjct: 58 KKIHSKIVVFGFHKHDIFLVNTLLH--AYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMY 115
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ +++ M+F+Q + + PNE+ L V++A + IHG+ + D
Sbjct: 116 THHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQD 175
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + SLI FY + A +F + K +W ++I+G+ + G + +++L+ +M+
Sbjct: 176 VYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKE 235
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+V PD+ + VLSAC + LE G + ++ ++GI MD++
Sbjct: 236 GHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVS 278
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 16/224 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++HA + + D + + L A SL ARK+F+ + +L ++N +I YS
Sbjct: 363 RQVHAYAIKVNIDNDDFVKNGLIDMYA--KCDSLTDARKVFNLMAAIDLVSYNAMIEGYS 420
Query: 100 SSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFV--IKAAARPVQFRVGQAIHGMFED--- 152
D+ ++ +F ++L +SP L FV + +A + IHG+
Sbjct: 421 RQDKLCEALDLFREMRLSLSSPTL-----LIFVSLLGVSASLYHLELSNQIHGLIIKYGV 475
Query: 153 --DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D ++LI Y+ C + A VF I KD+V W +M SG+ + E++++LY+
Sbjct: 476 SLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKC 535
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+++ +KP+E T V++A + L G + + K G D
Sbjct: 536 LQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDD 579
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 10/220 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IH ++ + D Y + L + + ++ AR +FD + +TW T+I YS
Sbjct: 162 QIHGLVVKGGYVQDVYVCTSLID--FYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSK 219
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDL 154
S +F Q+ P+++ L V+ A G+ IH G+ D +
Sbjct: 220 QGRSQVSLKLFDQM-KEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMD-V 277
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N I FY C + + +F + K+VVSW ++I+G ++ F A++L+ EM
Sbjct: 278 SMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARM 337
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
PD VL++C LE G V ++ K I D
Sbjct: 338 GWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDND 377
>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Cucumis sativus]
Length = 743
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 5/219 (2%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ D Y S L + A F + RK+FD + + N+ W T+I +YS
Sbjct: 71 LHQSVVVNGLSHDSYIGSSLISFYA--KFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSRE 128
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR--PVQFRVGQAIHGMFEDDLVISNS 159
+ +F +F Q+ S P TL ++ ++ + I FE DL +SNS
Sbjct: 129 GDIDIAFSMFKQM-RESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALSNS 187
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
+++ Y CG +A A +F IG +D+VSWNS++S + + G E+ ++L + M++E++KPD
Sbjct: 188 MVNMYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPD 247
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ T LSA A K DL G V + K+G+ +D E
Sbjct: 248 KQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVE 286
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 102/188 (54%), Gaps = 12/188 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYS---SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
AR++F+ I ++ +WN+L+ AYS +++E +Q LQ + P++ T +
Sbjct: 201 ARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQ----LLQAMKIEDIKPDKQTFCSALS 256
Query: 133 AAARPVQFRVGQAIHG-MFEDDLVIS----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A+A R+G+ +HG M +D L I ++L+ Y C L AY VF +KDVV
Sbjct: 257 ASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVM 316
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W +MISG V+ +KA+ ++ +M NVKP T+ L+ACA+ + G + ++
Sbjct: 317 WTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVL 376
Query: 248 KNGIKMDL 255
+ GI +D+
Sbjct: 377 RQGIMLDI 384
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 14/220 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H ML D + S L + C L+ A K+F + ++ W +I
Sbjct: 268 KLVHGLMLKDGLNIDQHVESALVVLYLRC-----RCLDPAYKVFKSTTEKDVVMWTAMIS 322
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---- 152
+D ++ +F Q++ S P+ TL + A A+ +G +IHG
Sbjct: 323 GLVQNDCADKALGVFYQMI-ESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIM 381
Query: 153 -DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ NSL+ YA C L + +F + +KD+VSWN++++G + G+ K I + EM
Sbjct: 382 LDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEM 441
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
++PD +T+ +L AC L G W+ + + ++ +
Sbjct: 442 RKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSL 481
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 98/213 (46%), Gaps = 8/213 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH +L D + + L T A + L+ + +F+++ + +L +WN ++ ++
Sbjct: 371 IHGYVLRQGIMLDIPAQNSLVTMYA--KCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAK- 427
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI----- 156
+ + + F + S P+ T+ +++A G+ IH +I
Sbjct: 428 NGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIMT 487
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+L+ Y CG+L A F + ++D+V+W+++I G+ G E A+ Y E +
Sbjct: 488 ETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLGTGM 547
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+P+ V + VLSAC+ + G+ + + K+
Sbjct: 548 EPNHVIFISVLSACSHGGLISKGLSIYESMTKD 580
>gi|297836444|ref|XP_002886104.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331944|gb|EFH62363.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 723
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 14/223 (6%)
Query: 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL 73
PN +TL + R F ++IH ++ + F+ S+ + C S F SL
Sbjct: 132 EPNVSTLVLVIHACRSLWF-----DGEKIHGYVIRSGFW--RISSVQNSILCLYSEFDSL 184
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
ARK+FD++ + ++ +W+ +IR+Y S EP+ +F ++V + P+ T+ V+KA
Sbjct: 185 S-ARKLFDEMSERDVISWSVVIRSYVQSQEPVLGLELFKEMVREAKTEPDCVTVTSVLKA 243
Query: 134 AARPVQFRVGQAIHGM-----FE-DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A VG+++HG F+ D+ + NSLI Y+ D A+ VF +++VS
Sbjct: 244 CAVLDDIDVGRSVHGFSIRRGFDLVDVFVRNSLIDMYSKGYDADSAFRVFDETTCRNIVS 303
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
WNS+++GFV +++A+E++R M+ E ++ DEVT+V +L C
Sbjct: 304 WNSILAGFVYNQRYDEALEMFRLMKKEALEADEVTLVSLLQVC 346
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 18/200 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K IH ++ + + + S L +T C+L ++ AR +FD + ++ + +T+I
Sbjct: 356 KSIHGVIIRRGYESNEVALSSLMDAYTSCSL-----VDDARTVFDSMSYKDVVSCSTMIS 410
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG------MF 150
++ IF Q+ PN T+ ++ A + R + HG +
Sbjct: 411 GLGRCGRSDEAISIFCQMRDK----PNAITVISLLSACSVSAVLRTSKWAHGIAIRRGLA 466
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+D+ + S++ YA CG + +A F I +K +VSW +IS + G +KA+ + E
Sbjct: 467 INDISVDTSIVDAYAKCGAIDIARRTFDQITEKSIVSWTVIISAYAINGLPDKALASFDE 526
Query: 211 MEVENVKPDEVTMVVVLSAC 230
M+ ++ P+ VT + LSAC
Sbjct: 527 MKRDSYTPNAVTYLAALSAC 546
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 19/140 (13%)
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
W ++ YS IQS I F + F P V KA A+ G F
Sbjct: 25 WREVVSGYS----EIQSAGI---------QFNDPFVFPIVFKACAKLSWLLQG------F 65
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E + + NS+ FY CGDL F + +D VSWN ++ G ++ GF E+ + + +
Sbjct: 66 ESYVSVGNSIADFYMKCGDLCSGLRAFDCMNSRDSVSWNVIVFGLLDHGFEEEGLWWFSK 125
Query: 211 MEVENVKPDEVTMVVVLSAC 230
+ V +P+ T+V+V+ AC
Sbjct: 126 LRVWGFEPNVSTLVLVIHAC 145
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 15/189 (7%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAY---SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+ A ++FD+ N+ +WN+++ + DE ++ F +L+ +E TL +
Sbjct: 287 DSAFRVFDETTCRNIVSWNSILAGFVYNQRYDEALEMF----RLMKKEALEADEVTLVSL 342
Query: 131 IKAAA-----RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
++ P + G I +E + V +SL+ Y C + A VF + KDV
Sbjct: 343 LQVCKFFEHPLPCKSIHGVIIRRGYESNEVALSSLMDAYTSCSLVDDARTVFDSMSYKDV 402
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VS ++MISG G ++AI ++ +M KP+ +T++ +LSAC+ L W
Sbjct: 403 VSCSTMISGLGRCGRSDEAISIFCQMRD---KPNAITVISLLSACSVSAVLRTSKWAHGI 459
Query: 246 IEKNGIKMD 254
+ G+ ++
Sbjct: 460 AIRRGLAIN 468
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 12/169 (7%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL-VYNSPYFPNEFTLPFVIKAAAR 136
+ FD + + +WN ++ + F +L V+ + PN TL VI A R
Sbjct: 90 RAFDCMNSRDSVSWNVIVFGLLDHGFEEEGLWWFSKLRVWG--FEPNVSTLVLVIHAC-R 146
Query: 137 PVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
+ F G+ IHG F + NS++ Y+ L+ A +F + ++DV+SW+ +
Sbjct: 147 SLWFD-GEKIHGYVIRSGFWRISSVQNSILCLYSEFDSLS-ARKLFDEMSERDVISWSVV 204
Query: 192 ISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFG 239
I +V+ +EL++EM E +PD VT+ VL ACA D++ G
Sbjct: 205 IRSYVQSQEPVLGLELFKEMVREAKTEPDCVTVTSVLKACAVLDDIDVG 253
>gi|255564603|ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537384|gb|EEF39012.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 353
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 123/256 (48%), Gaps = 44/256 (17%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
QLK+IHA L ++ +L ++ YA K+ D IP PN++ +N LI+
Sbjct: 2 NQLKQIHAYTLRNGIDYNKTLTERLIQ------IPNVPYAHKLIDLIPSPNVFLYNKLIQ 55
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
AYS ++ Q F I+ Q+ + N+ T F+ A A Q +H FE
Sbjct: 56 AYSFQNQLHQCFSIYSQM-RSRNCTGNQHTFTFLFAACASFFSPLHAQMLHTHFKKSGFE 114
Query: 152 DDLVIS-------------------------------NSLIHFYAVCGDLAMAYCVFVMI 180
D++ N+LI Y+ CGD+ A +F ++
Sbjct: 115 SDVIALTALVDMYCKLGMVAFAHRVFDEIPVRDIPTWNALIAGYSRCGDMEGALKIFKLM 174
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFG 239
++VVSW +MISG+ + G + KA+EL+ +ME EN ++P+EVT+ +L ACA LE G
Sbjct: 175 PDRNVVSWTAMISGYSQNGRYAKALELFLKMEKENGLRPNEVTIASILPACANLGALEVG 234
Query: 240 IWVSSHIEKNGIKMDL 255
+ ++ +NG+ +L
Sbjct: 235 DRIETYARENGLLRNL 250
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 91/171 (53%), Gaps = 9/171 (5%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +E A K+F +P N+ +W +I YS + ++ +FL++ + PNE T+
Sbjct: 159 SRCGDMEGALKIFKLMPDRNVVSWTAMISGYSQNGRYAKALELFLKMEKENGLRPNEVTI 218
Query: 128 PFVIKAAARPVQFRVGQAI------HGMFEDDLVISNSLIHFYAVCGDLAMAYCVF-VMI 180
++ A A VG I +G+ + L +SN+L+ YA CG + MA VF +I
Sbjct: 219 ASILPACANLGALEVGDRIETYARENGLLRN-LYVSNALLEMYARCGKIDMARKVFDKII 277
Query: 181 GKK-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
GK+ ++ SWNSMI G G A+ LY M +E + PD+VT V +L AC
Sbjct: 278 GKRRNLCSWNSMIMGLAIHGRSHDALHLYNRMLIEGIAPDDVTFVGILLAC 328
>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
Length = 917
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLI 95
K IH+Q+L F S + CA+ SLE AR++F+++P PN +WN ++
Sbjct: 224 KLIHSQVLEDGF------ESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIV 277
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
A + +++ F ++ P++ T ++ A + P G+ +H +
Sbjct: 278 AACTQHGCCVEALWYFQRMQLQGGITPDKVTFITILNACSSPATLTFGELLHECILQCGY 337
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ L++ N ++ Y+ CG + A F + ++D +SWN++ISG + GF ++A+ L+R
Sbjct: 338 DTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRR 397
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M E + PD+ T + ++ A+ ++ + +S + ++G+++D+
Sbjct: 398 MLAEGITPDKFTFISIIDGTARMQEAKI---LSELMVESGVELDV 439
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 13/172 (7%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAY---SSSDEPIQSFMIFLQLVYNSPYFPNE 124
S + ++ AR +FD + ++ W ++I +Y SSD+ + +L+ N+
Sbjct: 450 SRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGC----TRLMRLEGLMGND 505
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
FTL + A A G+ IH F + N+LI+ YA CG L A VF
Sbjct: 506 FTLVTALNACASLTALSEGKLIHAHAIERGFAASPAVGNALINMYAKCGCLEEADRVFHQ 565
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
GK ++VSWN++ + +V+ + +A++L++EM++E +K D+V+ V VL+ C+
Sbjct: 566 CGK-NLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCS 616
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 20 LTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKM 79
+TV NG ++ + ++IH +L T D ++ L S SL+ A ++
Sbjct: 609 VTVLNG-------CSSASEGRKIHNILLETGMESDHIVSTALLNMYTAS--KSLDEASRI 659
Query: 80 FDQIPQPNLYTWNTLIRA---YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA--A 134
F ++ ++ +WN +I + S E IQ F Q + P++ + V+ A
Sbjct: 660 FSRMEFRDIVSWNAMIAGKAEHGLSREAIQMF----QRMQLEGVAPDKISFVTVLNAFSG 715
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ P + + + + +E D ++ N+++ + G LA A F I ++D SWN
Sbjct: 716 SSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASWN 775
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+++ + G E+A++L+R M+ E+ +PD +T+V VLSAC+ +E G
Sbjct: 776 VIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACSHGGLIEEG 825
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 14/222 (6%)
Query: 42 IHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+H+++ +++F D + ++ C +E A +F + P+ +WN+L+ A+
Sbjct: 24 VHSRVEASEFRRDDLVQNATIHMYGKCG-----CVEDAVSVFQSLDHPSQVSWNSLLAAF 78
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ + Q+F IF ++ P+ T V+ + G+ +HG E +
Sbjct: 79 ARDGQFQQAFQIFQRMKLQG-LAPDRITFVTVLDGCSAIGDLSRGKLLHGFVLEAGLERN 137
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+++ SLI Y CG + A VF + +DVVSW SMI +V+ +A+EL+ M
Sbjct: 138 VMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRP 197
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V P+ +T +SACA + G + S + ++G + D+
Sbjct: 198 SGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDV 239
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 98/203 (48%), Gaps = 12/203 (5%)
Query: 56 YSASKLFTPCALSTFSS---LEYARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFM 109
Y + C ++ +SS ++ A F + + + +WNT+I ++ + DE + F
Sbjct: 337 YDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFR 396
Query: 110 IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA--IHGMFEDDLVISNSLIHFYAVC 167
L P++FT +I AR + ++ + E D+ + ++LI+ ++
Sbjct: 397 RMLA----EGITPDKFTFISIIDGTARMQEAKILSELMVESGVELDVFLVSALINMHSRY 452
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G++ A +F + +D+V W S+IS +V+ G + A+ R M +E + ++ T+V L
Sbjct: 453 GNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTAL 512
Query: 228 SACAKKRDLEFGIWVSSHIEKNG 250
+ACA L G + +H + G
Sbjct: 513 NACASLTALSEGKLIHAHAIERG 535
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 130/297 (43%), Gaps = 72/297 (24%)
Query: 26 HQRH--PHFLTN---QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF 80
H +H LTN K LK++HA + T DP A KL A+S +L+YAR++F
Sbjct: 3 HTQHLCSSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLF 62
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA----- 135
P P+++ NTLIR + SD P S + F+++ + F+ F++KAAA
Sbjct: 63 LHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSL 122
Query: 136 -RPVQFRVGQAIHG------------------------------MFEDDLVISNSLIHFY 164
+Q +HG MFE ++V N+++
Sbjct: 123 ESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTAC 182
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG------------------------- 199
CGD+ A +F + +++ SWN M++G+ + G
Sbjct: 183 FRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIV 242
Query: 200 ------FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
FF +A +RE++ ++P+EV++ LSACA +EFG + IEK+G
Sbjct: 243 GFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSG 299
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE ARK+F ++P + +W+T+I ++ + ++F F +L PNE +L
Sbjct: 217 GELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFREL-QQVGMRPNEVSLTGA 275
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVF-VMIGKKD 184
+ A A G+ +HG E + ++N+L+ Y+ CG++ MA VF M K+
Sbjct: 276 LSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRS 335
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+VSW SMI+G G+ E+AI+L+ EME ++PD + + +L AC+ +E G
Sbjct: 336 IVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKG 390
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S L Y +FD++ P ++ WNT++R++S+S +P Q ++ + N P+ T
Sbjct: 49 SATKDLGYTLLLFDRLATPYIFLWNTIVRSFSASSQP-QMVLVAYSRLRNHGVIPDRHTF 107
Query: 128 PFVIKAAAR-----PVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
P ++KA ++ P QF G+ + D + NSL+ +A CG + + +F+ K
Sbjct: 108 PLLLKAFSKLRNENPFQFYAHIVKFGL-DFDAFVQNSLVSAFAHCGYVDCSRRLFIETAK 166
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
KDVVSW ++I+G + G +A+E + EM V+ DEVT+V VL A A RD+ FG WV
Sbjct: 167 KDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWV 226
Query: 243 SSHIEKNG 250
++G
Sbjct: 227 HGFYVESG 234
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 122/220 (55%), Gaps = 9/220 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+ +A ++ FD + + L + A + ++ +R++F + + ++ +W LI
Sbjct: 124 QFYAHIVKFGLDFDAFVQNSLVS--AFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLR 181
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED------DL 154
+ +++ F+++ +S +E T+ V+ AAA G+ +HG + + D+
Sbjct: 182 NGRAVEALECFVEM-RSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDV 240
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ ++L+ Y+ CG A VF + +++VSW ++I+G+V+ +++A+++++EM +E
Sbjct: 241 YVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIE 300
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++P++ T+ L+ACA+ L+ G W+ +++++ + ++
Sbjct: 301 GIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLN 340
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 14/201 (6%)
Query: 48 STDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEP 104
S +D Y S L ++ C + A K+F+++P NL +W LI Y +
Sbjct: 233 SGRVIWDVYVGSALVDMYSKCGYC-----DDAVKVFNEMPTRNLVSWGALIAGYVQCNRY 287
Query: 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS----- 159
++ +F +++ PN+ T+ + A A+ G+ +H + + NS
Sbjct: 288 KEALKVFQEMIIEGIE-PNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTA 346
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
L+ Y+ CG + A VF + KDV W +MI+G G ++ L+ +M V+P+
Sbjct: 347 LVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPN 406
Query: 220 EVTMVVVLSACAKKRDLEFGI 240
VT + VLSACA ++ G+
Sbjct: 407 GVTFLGVLSACAHGGLVDEGL 427
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 16/226 (7%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY---ARKMFDQIPQ--PNLYTWNTLIRA 97
HA L D + + L ++ +SS Y AR + D P+ ++ +WNT+I
Sbjct: 116 HALSLKLSLASDSFVLNAL-----INMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAG 170
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y P ++ F Q+ +E TL V+ A AR +VG H + FE
Sbjct: 171 YIRGGMPNKALQSFHQMAKEQVRL-DEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEI 229
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ I +SL+ YA CG + A VF + +++VV W SMI+G + G F++A++L+R+M+
Sbjct: 230 NCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQ 289
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ VK D+ T+ V+S+C + L+ G ++ ++ + +G+ +L+ +
Sbjct: 290 IAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVK 335
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 15/206 (7%)
Query: 43 HAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
HA ++ F + Y S L + C + +E AR++F+++P+ N+ W ++I +
Sbjct: 219 HALVVLNGFEINCYIGSSLVSMYAKCGM-----VEEARRVFNRMPERNVVCWTSMIAGCT 273
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
S ++ +F + + ++ T+ V+ + + +G+ +H + +L
Sbjct: 274 QSGRFKEAVDLFRDMQI-AGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKEL 332
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ NSLI Y+ CGD+ AY +F + K+DV +W MI GF G +A++L+ +ME E
Sbjct: 333 SVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGE 392
Query: 215 N-VKPDEVTMVVVLSACAKKRDLEFG 239
+ V P+EV + VL+AC+ +E G
Sbjct: 393 DKVMPNEVIFLGVLTACSHGGLVEQG 418
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 8/217 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IHA ++ F D + L T + AR +FD++P+ + +WN +I Y
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALIT--MYVKCGDISNARMLFDKMPKRDRISWNAMISGYF 275
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ ++ +F ++ P+ T+ V A R+G+ +HG F D+
Sbjct: 276 ENGGGLEGLELF-SMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDI 334
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++NSLI Y+ G L A VF + KDVVSW +MI+ V KA+E Y+ ME+E
Sbjct: 335 SMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELE 394
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ PDE+T+V VLSACA L+ GI + K G+
Sbjct: 395 GILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL 431
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 103/193 (53%), Gaps = 6/193 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F +L A +F ++ + ++++WN L+ Y+ + ++ ++ ++++ + PN +T P
Sbjct: 145 FGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW-AEIRPNVYTFPS 203
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+K A G+ IH FE D+ + N+LI Y CGD++ A +F + K+D
Sbjct: 204 VLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRD 263
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+SWN+MISG+ E G + +EL+ M +V PD +TM V SAC + G V
Sbjct: 264 RISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHG 323
Query: 245 HIEKNGIKMDLTF 257
++ K+ D++
Sbjct: 324 YVVKSEFGGDISM 336
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 9/228 (3%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
L N++ + +H ++ ++F D + L S+ LE A +F ++ ++ +W
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQ--MYSSLGRLEEAETVFSRMESKDVVSW 368
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+I + S P ++ + +++ P+E TL V+ A A +G +H +
Sbjct: 369 TAMIASLVSHKLPFKAVETY-KMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAI 427
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+++SNSLI Y+ C + A VF I K+VVSW S+I G +A+
Sbjct: 428 KTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALL 487
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+R+M+ E++KP+ VT++ VLSACA+ L G + +H + G+ D
Sbjct: 488 FFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFD 534
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A ++F I N+ +W +LI ++ ++ + F Q+ PN TL
Sbjct: 446 SKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM--KESMKPNSVTL 503
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A AR G+ IH D + N+++ Y CG A F K
Sbjct: 504 ISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QK 562
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
KDV +WN +++G+ + G + A+EL+ +M + PDE+T + +L AC+K
Sbjct: 563 KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSK 612
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 34/246 (13%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF 70
+P + NP TL+ + Q H H L +++ + A + + D +L C
Sbjct: 21 VPNNHNPKTLSFSKNLQTHKHTLRKTQEISVVGAAV--SHSAIDQTQNLELRELCLQG-- 76
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF- 129
+LE A K + + + +R D +++ L+L P+E + +
Sbjct: 77 -NLEQAMKRLESMLE---------LRIEVEED----AYIALLRLC-EWRRAPDEGSRVYE 121
Query: 130 VIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
++ ++ + R+G A+ MF + F G+L A+ VF + ++DV SWN
Sbjct: 122 LVSSSKSCLCVRLGNALLSMF----------VRF----GNLLDAWYVFGKMSERDVFSWN 167
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
++ G+ + G F++A+ LY M ++P+ T VL CA D+ G + +H+ +
Sbjct: 168 VLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRF 227
Query: 250 GIKMDL 255
G + D+
Sbjct: 228 GFESDV 233
>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
Length = 745
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 117/239 (48%), Gaps = 13/239 (5%)
Query: 8 VISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLK-RIHAQMLSTDFFFDPYSASKLFTPCA 66
+ ++ P+ T + G P L + + L RI A+ DF S +FT C
Sbjct: 262 MCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLIS-MFTRCG 320
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
SLE AR+ F I + L WNT++ AY+ D+ + ++ ++ + P+ FT
Sbjct: 321 -----SLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEG-FTPDRFT 374
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
V+ + A R G+ IH FE D+++ +L++ YA CG LA A F I
Sbjct: 375 FSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGIS 434
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
KDVVSW++MI+ + G E+A+EL M ++ + +EVT VL AC+ L GI
Sbjct: 435 NKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGI 493
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 7/179 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E AR++FD+I Q N ++W+ L+ Y + ++ ++ ++V + +TL V+ A
Sbjct: 19 EDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKEISI-DAYTLSSVLAA 77
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-KDVVS 187
+ + G+ + FE D+V++ SLIH +A CG L A VF +G +D++S
Sbjct: 78 CTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIIS 137
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+MI +V G + A++ Y +M + ++PD T +L AC+ L G + HI
Sbjct: 138 VTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHI 196
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 11/246 (4%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
P+ T G P FL + K IH +L + F + + L T A SL+
Sbjct: 168 PDAFTYAAILGACSSPDFLLDGKH---IHKHILESKHFGNISVRNALITMYA--KCGSLK 222
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
++ +F + ++ +WN +I AY+ +F +F ++ + P+ +T ++ A
Sbjct: 223 DSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMC-TLGHTPDIYTFSSILGAC 281
Query: 135 ARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A P + G+ +H F+ D + N+LI + CG L A F I KK++ +WN
Sbjct: 282 ASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWN 341
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+M++ + + + A+ LY+ M +E PD T V+ +CA L G ++
Sbjct: 342 TMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSC 401
Query: 250 GIKMDL 255
G + D+
Sbjct: 402 GFEKDV 407
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCV 176
P+ FT ++ A + P G+ IH + ++ + N+LI YA CG L + +
Sbjct: 168 PDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSL 227
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F+ + KDVVSWN+MI+ + G + A L+ M PD T +L ACA + L
Sbjct: 228 FLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRL 287
Query: 237 EFGIWVSSHIEKNGIKMDLTFE 258
E G + I G D +
Sbjct: 288 EDGRMLHVRITARGFDRDFAMQ 309
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D ++N +I Y C A VF I +++ SW+ ++ +V+ +++A+E+Y+EM
Sbjct: 1 DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ + D T+ VL+AC K D+E G V E+ G + D+
Sbjct: 61 RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDV 103
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 18/228 (7%)
Query: 30 PHFL------TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMFDQ 82
PH + T K+LK+I A + T++ + +K C + T +S+E+A ++FDQ
Sbjct: 27 PHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQ 86
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
I QPN+ +NT+ R Y+ ++P++ MI +F L +KA A Q
Sbjct: 87 ITQPNIVLFNTMARGYARLNDPLR--MI--------THFRRCLRLVSKVKALAEGKQLHC 136
Query: 143 GQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
G+ D++ + +LI+ Y CGD+ + VF I + VV++N++I
Sbjct: 137 FAVKLGV-SDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRAN 195
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+A+ L+RE++ +KP +VTM+VVLS+CA L+ G W+ +++K G
Sbjct: 196 EALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYG 243
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 106/212 (50%), Gaps = 11/212 (5%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L KQL ++ +D + + ++T C ++ +R++FD+I +P + +N
Sbjct: 128 LAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACG-----DIDASRRVFDKIDEPCVVAYN 182
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+I + + ++ ++ +F +L P + T+ V+ + A +G+ +H
Sbjct: 183 AIIMSLARNNRANEALALFREL-QEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKK 241
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F+ + ++ +LI YA CG L A VF + K+D +W+++I + G +AI +
Sbjct: 242 YGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISM 301
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
EM+ E V+PDE+T + +L AC+ +E G
Sbjct: 302 LNEMKKEKVQPDEITFLGILYACSHNGLVEEG 333
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 8/217 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IHA ++ F D + L T + AR +FD++P+ + +WN +I Y
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALIT--MYVKCGDISNARMLFDKMPKRDRISWNAMISGYF 275
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ ++ +F ++ P+ T+ V A R+G+ +HG F D+
Sbjct: 276 ENGGGLEGLELF-SMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDI 334
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++NSLI Y+ G L A VF + KDVVSW +MI+ V KA+E Y+ ME+E
Sbjct: 335 SMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELE 394
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ PDE+T+V VLSACA L+ GI + K G+
Sbjct: 395 GILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL 431
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 103/193 (53%), Gaps = 6/193 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F +L A +F ++ + ++++WN L+ Y+ + ++ ++ ++++ + PN +T P
Sbjct: 145 FGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW-AEIRPNVYTFPS 203
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+K A G+ IH FE D+ + N+LI Y CGD++ A +F + K+D
Sbjct: 204 VLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRD 263
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+SWN+MISG+ E G + +EL+ M +V PD +TM V SAC + G V
Sbjct: 264 RISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHG 323
Query: 245 HIEKNGIKMDLTF 257
++ K+ D++
Sbjct: 324 YVVKSEFGGDISM 336
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 9/228 (3%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
L N++ + +H ++ ++F D + L S+ LE A +F ++ ++ +W
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQ--MYSSLGRLEEAETVFSRMESKDVVSW 368
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+I + S P ++ + +++ P+E TL V+ A A +G +H +
Sbjct: 369 TAMIASLVSHKLPFKAVETY-KMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAI 427
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+++SNSLI Y+ C + A VF I K+VVSW S+I G +A+
Sbjct: 428 KTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALL 487
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+R+M+ E++KP+ VT++ VLSACA+ L G + +H + G+ D
Sbjct: 488 FFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFD 534
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A ++F I N+ +W +LI ++ ++ + F Q+ PN TL
Sbjct: 446 SKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM--KESMKPNSVTL 503
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A AR G+ IH D + N+++ Y CG A F K
Sbjct: 504 ISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QK 562
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
KDV +WN +++G+ + G + A+EL+ +M + PDE+T + +L AC+K
Sbjct: 563 KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSK 612
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 34/246 (13%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF 70
+P + NP TL+ + Q H H L +++ + A + + D +L C
Sbjct: 21 VPNNHNPKTLSFSKNLQTHKHTLRKTQEISVVGAAV--SHSAIDQTQNLELRELCLQG-- 76
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF- 129
+LE A K + + + +R D +++ L+L P+E + +
Sbjct: 77 -NLEQAMKRLESMLE---------LRIEVEED----AYIALLRLC-EWRRAPDEGSRVYE 121
Query: 130 VIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
++ ++ + R+G A+ MF + F G+L A+ VF + ++DV SWN
Sbjct: 122 LVSSSKSCLCVRLGNALLSMF----------VRF----GNLLDAWYVFGKMSERDVFSWN 167
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
++ G+ + G F++A+ LY M ++P+ T VL CA D+ G + +H+ +
Sbjct: 168 VLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRF 227
Query: 250 GIKMDL 255
G + D+
Sbjct: 228 GFESDV 233
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 14/208 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++H +L F Y + L + C SS+ ARK FD + +P++ W ++I
Sbjct: 330 KQVHDYLLKLGFESQIYVMTALVDMYAKC-----SSIVDARKGFDYLQEPDIVLWTSMIG 384
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + E + ++ ++ PNE T+ V+KA + G+ IH F
Sbjct: 385 GYVQNGENEDALSLYGRMEMEG-ILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFG 443
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ I ++L YA CG L VF + +DV+SWN+MISG + G ++A+EL+ EM
Sbjct: 444 LEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEM 503
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
++E KPD VT V +LSAC+ +E G
Sbjct: 504 QLEGTKPDYVTFVNILSACSHMGLVERG 531
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 11/231 (4%)
Query: 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
P + N KQ+ I + + ++ C SL+ A + F+ N
Sbjct: 222 PELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCG-----SLDDALQTFETSSDKNSI 276
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TW+ +I + S + ++ +F + + S P+EFT VI A + G+ +H
Sbjct: 277 TWSAMITGXAQSGDSDKALKLFSSM-HLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDY 335
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
FE + + +L+ YA C + A F + + D+V W SMI G+V+ G E A
Sbjct: 336 LLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDA 395
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ LY ME+E + P+E+TM VL AC+ LE G + + K G +++
Sbjct: 396 LSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEV 446
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD +P+ N +W T+I Y+S ++ +F +L+ NEF V+ A
Sbjct: 162 ARKVFDTMPERNSVSWATMISGYASQKLAAEALGLF-RLMRREEEGENEFVFTSVLSALT 220
Query: 136 RPVQFRVGQAIHGMFEDDLVIS-----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
P G+ IH + + ++S N+L+ YA CG L A F K+ ++W++
Sbjct: 221 LPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSA 280
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI+G + G +KA++L+ M + ++P E T V V++AC+
Sbjct: 281 MITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 14/232 (6%)
Query: 28 RHPHFLTNQKQLKRIHAQML--STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ 85
++ H + QK K +HAQ++ S+ + S L+ C L A+ +F++I
Sbjct: 15 QYTHNRSLQKG-KALHAQIIKSSSSCVYIANSLVNLYAKC-----QRLREAKFVFERIQN 68
Query: 86 PNLYTWNTLIRAYSSSDEPIQS-FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
++ +WN +I YS S M Q + PN T V AA+ V G+
Sbjct: 69 KDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGR 128
Query: 145 AIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
H + D+ + +SL++ Y G A VF + +++ VSW +MISG+
Sbjct: 129 LAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQK 188
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+A+ L+R M E +E VLSA + G + KNG+
Sbjct: 189 LAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGL 240
>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g01510, mitochondrial; Flags: Precursor
gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 584
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 8/227 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQLK+IHA +L T F ++L L + YAR++FD++ +P ++ WNTL +
Sbjct: 25 KQLKKIHAIVLRTGFSEKNSLLTQLLEN--LVVIGDMCYARQVFDEMHKPRIFLWNTLFK 82
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + P +S +++ ++ + P+EFT PFV+KA ++ F G A+H F
Sbjct: 83 GYVRNQLPFESLLLYKKM-RDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFG 141
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+++ L+ Y G+L+ A +F + KD+V+WN+ ++ V+ G A+E + +M
Sbjct: 142 CLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKM 201
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ V+ D T+V +LSAC + LE G + K I ++ E
Sbjct: 202 CADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVE 248
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F L A +F+ + +L WN + + + F ++ ++ F + FT+
Sbjct: 157 FGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQF-DSFTVVS 215
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
++ A + +G+ I+ + ++++ N+ + + CG+ A +F + +++
Sbjct: 216 MLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRN 275
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
VVSW++MI G+ G +A+ L+ M+ E ++P+ VT + VLSAC+
Sbjct: 276 VVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACS 322
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 122/233 (52%), Gaps = 15/233 (6%)
Query: 32 FLTNQKQLKRIHAQMLSTDFF---FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP-N 87
L +++ +H + + F S ++T C + L AR++FD++P+ +
Sbjct: 192 LLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKC-----NDLNGARQLFDRMPEKED 246
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
+ +WN++I AYSS+ + I++ +F ++ + PN +T ++A + G IH
Sbjct: 247 VVSWNSMISAYSSNGQSIEALRLFGEM-QKASLAPNTYTFVAALQACEDSSFIKQGMFIH 305
Query: 148 GM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
+ ++ ++N+LI YA G + A +F + D +SWNSM+SGFV+ G +
Sbjct: 306 ATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYH 365
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+A++ Y EM KPD V ++ +++A A+ + G+ + ++ KNG+ DL
Sbjct: 366 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDL 418
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 126/248 (50%), Gaps = 21/248 (8%)
Query: 16 NPTTLTVNNGHQRHPHFLTNQKQL---KRIHAQMLSTDFFFDPYSASK----LFTPCALS 68
+P+ +++ + ++K L +++HA M++++ F+ S ++ C
Sbjct: 71 SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCG-- 128
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL-VYNSPYFPNEFTL 127
L A K+FD +P ++TWN +I AY ++ EP+ S ++ ++ V P + T
Sbjct: 129 ---CLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPL--DACTF 183
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF-VMIG 181
P ++KA R G +HG+ + + ++NS++ Y C DL A +F M
Sbjct: 184 PCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPE 243
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
K+DVVSWNSMIS + G +A+ L+ EM+ ++ P+ T V L AC ++ G++
Sbjct: 244 KEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMF 303
Query: 242 VSSHIEKN 249
+ + + K+
Sbjct: 304 IHATVLKS 311
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 6/166 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+++YA +MF+ I ++ +W ++I Y + ++ +F L+ + P+ +L +
Sbjct: 532 GNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELF-HLMKETGVEPDSISLVSI 590
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ AAA + G+ IHG F + ++++L+ YA CG L + VF I KD+
Sbjct: 591 LSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDL 650
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
V W SMI+ + G AI+L+R ME E++ PD + V VL AC+
Sbjct: 651 VLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 696
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 25/235 (10%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQ IHA +L + ++ + + A+ L A F + A +F + + +WN+++
Sbjct: 299 KQGMFIHATVLKSSYYINVFVANALIAMYA--RFGKMGEAANIFYNMDDWDTISWNSMLS 356
Query: 97 AYSSSD---EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+ + E +Q F + ++ P+ + +I A+AR G +HGM
Sbjct: 357 GFVQNGLYHEALQ----FYHEMRDAGQKPDLVAVISIIAASARS-----GNTLHGMQIHA 407
Query: 150 ------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
+ DL + NSL+ YA + C+F + KDVVSW ++I+G + G +
Sbjct: 408 YAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSR 467
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
A+EL+RE+++E + D + + +L AC+ + + + S+I + G+ DL +
Sbjct: 468 ALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQ 521
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F S++Y +FD++P ++ +W T+I ++ + ++ +F ++
Sbjct: 429 AKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMIS 488
Query: 128 PFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
++ + + V + IH DLV+ N ++ Y CG++ A +F +I K
Sbjct: 489 SILLACSGLKLISSV-KEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFK 547
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
DVVSW SMIS +V G +A+EL+ M+ V+PD +++V +
Sbjct: 548 DVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSI 590
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 10/139 (7%)
Query: 122 PNEFTL----PFVIKAAARPVQFRVGQAIHG------MFEDDLVISNSLIHFYAVCGDLA 171
P++F+L V++ GQ +H + + +S L+ Y CG L
Sbjct: 72 PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 131
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A +F + K + +WN+MI +V G ++ELYREM V + D T +L AC
Sbjct: 132 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 191
Query: 232 KKRDLEFGIWVSSHIEKNG 250
+D +G V K G
Sbjct: 192 LLKDRRYGAEVHGLAIKEG 210
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 6/173 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L A+++F+ +P+ N+ +W TLI +S + + + + +++ PNE+T+ V+
Sbjct: 243 LNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEML-EKGLKPNEYTVAAVLS 301
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A ++ G IHG D D I SL+ YA CG++ A VF + KD++S
Sbjct: 302 ACSKSGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKCGEVDCAATVFSNMNHKDILS 361
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
W +MI G+ G F +AI+ +R+M KPDEV + VL+AC +++ G+
Sbjct: 362 WTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLGL 414
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 62/97 (63%)
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
++LI Y G+L A +F ++ +K+VVSW ++I+GF + G +E AI Y EM + +K
Sbjct: 231 STLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLK 290
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
P+E T+ VLSAC+K L GI + +I NGIK+D
Sbjct: 291 PNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 21/198 (10%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H + L+ +HA +L +A C+ S S +Y+ +F + N +
Sbjct: 37 HTCKDTVSLRLVHAHILRRGVLSSRVAAQ--LVSCS-SLLKSPDYSLSIFRNSEERNPFV 93
Query: 91 WNTLIRAYSSSDE---PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR-VGQAI 146
+N LIR + + ++ F++ L L P+ T PFV+K+ ++ + FR +G+A+
Sbjct: 94 FNALIRGLTENARFECSVRHFILMLTLGVK----PDRLTFPFVLKSNSK-LGFRWLGRAL 148
Query: 147 HGM----FED-DLVISNSLIHFYAVCGDLAMAYCVFV----MIGKKDVVSWNSMISGFVE 197
H F D D + SL+ YA G L A+ VF I K+ ++ WN +++G+
Sbjct: 149 HAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYCR 208
Query: 198 GGFFEKAIELYREMEVEN 215
+ A L+R M N
Sbjct: 209 AKDMQMATTLFRSMPERN 226
>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Brachypodium distachyon]
Length = 802
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 14/227 (6%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
N ++IHA + S+ F D + S L+ C S+ A K+FD++ ++ +W
Sbjct: 66 NLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCG-----SVVEAHKVFDKMRNKDMVSW 120
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+LI Y+ +D P ++ + ++ + PN FT ++KA +G IH +
Sbjct: 121 TSLIAGYAQNDMPAEAIGLLPGML-KGRFKPNGFTFASLLKAVGAYADSGIGGQIHALAV 179
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+ +D+ + ++L+ YA CG + MA VF + K+ VSWN++ISGF G E A+
Sbjct: 180 KCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALM 239
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
++ EM+ + T + SA A LE G WV +H+ K+ K+
Sbjct: 240 VFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKL 286
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 8/196 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IHA + D+ D Y S L A ++ A +FD++ N +WN LI ++
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARC--GKMDMATAVFDKLDSKNGVSWNALISGFAR 230
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLV 155
+ + M+F ++ N + FT + A A G+ +H +
Sbjct: 231 KGDGETALMVFAEMQRNG-FEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAF 289
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ N+++ YA G + A VF + KD+V+WNSM++ F + G ++A+ + EM
Sbjct: 290 VGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSG 349
Query: 216 VKPDEVTMVVVLSACA 231
+ ++++ + +L+AC+
Sbjct: 350 IYLNQISFLCILTACS 365
>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 823
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 123/245 (50%), Gaps = 11/245 (4%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PNP LT + L++ K IH + T + +P+ L A +E
Sbjct: 247 PNPFVLT---SALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYA--KCGDIE 301
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
A +F+ IP ++ W+ LI Y+ S + Q+F +FL+++ S PNEF+L V++A
Sbjct: 302 DAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMM-RSFVVPNEFSLSGVLQAC 360
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A +G+ IH + +E +L + N+L+ YA C ++ + +F + + VSWN
Sbjct: 361 ANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWN 420
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
++I G+ + GF E A+ ++ EM ++ +VT VL ACA ++ + + S IEK+
Sbjct: 421 TIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKS 480
Query: 250 GIKMD 254
D
Sbjct: 481 TFNND 485
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 10/193 (5%)
Query: 59 SKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
S+LF AL + ++E + ++F + N +WNT+I Y S + +F ++
Sbjct: 383 SELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEM 442
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGD 169
+ + T V++A A + IH + F +D ++ NSLI YA CG
Sbjct: 443 -RAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGF 501
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
+ A VF I + DVVSWNS+IS + G A+EL+ M ++K ++VT V +LS
Sbjct: 502 IRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSV 561
Query: 230 CAKKRDLEFGIWV 242
C + G+W+
Sbjct: 562 CGSTGLVNQGLWL 574
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A S ++ +AR +FD I + TW ++ YS +D P + F ++ + + PN F
Sbjct: 192 AYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRM-TGFKPNPF 250
Query: 126 TLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
L +KAA +G+ IHG +++ + + +L+ YA CGD+ A+ +F MI
Sbjct: 251 VLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMI 310
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
DV+ W+ +IS + + E+A E++ M V P+E ++ VL ACA LE G
Sbjct: 311 PHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELG 369
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L AR++FD +P+ N ++ TL++ Y+ E ++ +F +L + N F L ++K
Sbjct: 98 LATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRL-QREGHEVNHFVLTTILK 156
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ IH + + + +LI Y++CG + A CVF I KD V+
Sbjct: 157 VLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVT 216
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
W +M+S + E E A+ + +M + KP+ + L A
Sbjct: 217 WTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKA 258
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 129 FVIKAAARPVQFRVGQAIH-------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
F+ + AR R G+A+H G+ + D +N L++FYA G LA A +F +
Sbjct: 51 FLQRCIARG-DARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMP 109
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
+++ VS+ +++ G+ G FE+A+EL+R ++ E + + + +L
Sbjct: 110 ERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTIL 155
>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 597
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 8/227 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQLK+IHA ++ T F ++L L + YAR++FD++P+P ++ WNTL +
Sbjct: 25 KQLKKIHAVVIRTGFSEKNSLLTQLLENLVL--VGDMCYARQVFDEMPKPRIFLWNTLFK 82
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + P +S +++ ++ + P+EFT PFV+KA ++ G ++H FE
Sbjct: 83 GYVRNQLPFESVLLYKKM-RDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFE 141
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+++ L+ Y G+L+ A +F + KD+V+WN+ I+ V+ G A+E + +M
Sbjct: 142 CLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKM 201
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ V+ D T+V +LSAC + L+ G + K I+ ++ E
Sbjct: 202 CADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVE 248
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 93/195 (47%), Gaps = 8/195 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+HA +L F A++L F L A +F+ + +L WN I +
Sbjct: 131 LHAHVLKNGFECLGIVATELVM--MYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQT 188
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
+ F ++ ++ F + FT+ ++ A + +G+ I+ E ++++
Sbjct: 189 GNSAIALEYFNKMCADAVQF-DSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIV 247
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+ + + CG A +F + +++VVSW++MI G+ G +A+ L+ M+ E +
Sbjct: 248 ENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGL 307
Query: 217 KPDEVTMVVVLSACA 231
+P+ VT + VLSAC+
Sbjct: 308 RPNYVTFLGVLSACS 322
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 14/208 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++H +L F Y + L + C SS+ ARK FD + +P++ W ++I
Sbjct: 330 KQVHDYLLKLGFESQIYVMTALVDMYAKC-----SSIVDARKGFDYLQEPDIVLWTSMIG 384
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + E + ++ ++ PNE T+ V+KA + G+ IH F
Sbjct: 385 GYVQNGENEDALSLYGRMEMEG-ILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFG 443
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ I ++L YA CG L VF + +DV+SWN+MISG + G ++A+EL+ EM
Sbjct: 444 LEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEM 503
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
++E KPD VT V +LSAC+ +E G
Sbjct: 504 QLEGTKPDYVTFVNILSACSHMGLVERG 531
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 11/231 (4%)
Query: 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
P + N KQ+ I + + ++ C SL+ A + F+ N
Sbjct: 222 PELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCG-----SLDDALQTFETSSDKNSI 276
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TW+ +I Y+ S + ++ +F + + S P+EFT VI A + G+ +H
Sbjct: 277 TWSAMITGYAQSGDSDKALKLFSSM-HLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDY 335
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
FE + + +L+ YA C + A F + + D+V W SMI G+V+ G E A
Sbjct: 336 LLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDA 395
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ LY ME+E + P+E+TM VL AC+ LE G + + K G +++
Sbjct: 396 LSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEV 446
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD +P+ N +W T+I Y+S ++ +F +L+ NEF V+ A
Sbjct: 162 ARKVFDTMPERNSVSWATMISGYASQKLAAEALGLF-RLMRREEEGENEFVFTSVLSALT 220
Query: 136 RPVQFRVGQAIHGMFEDDLVIS-----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
P G+ IH + + ++S N+L+ YA CG L A F K+ ++W++
Sbjct: 221 LPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSA 280
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI+G+ + G +KA++L+ M + ++P E T V V++AC+
Sbjct: 281 MITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 28 RHPHFLTNQKQLKRIHAQML--STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ 85
++ H + QK K +HAQ++ S+ + S L+ C L A+ +F++I
Sbjct: 15 QYTHNRSLQKG-KALHAQIIKSSSSCVYIANSLVNLYAKC-----QRLREAKFVFERIQN 68
Query: 86 PNLYTWNTLIRAYSSSDEPIQS-FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
++ +WN +I YS S M Q + PN T V AA+ V G+
Sbjct: 69 KDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGR 128
Query: 145 AIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
H + D+ + +SL++ Y G A VF + +++ VSW +MISG+
Sbjct: 129 LAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQK 188
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSA 229
+A+ L+R M E +E VLSA
Sbjct: 189 LAAEALGLFRLMRREEEGENEFVFTSVLSA 218
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 143 GQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
G+A+H + I+NSL++ YA C L A VF I KDVVSWN +I+G+ +
Sbjct: 25 GKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQH 84
Query: 199 G--FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G +EL++ M EN P+ T V +A + D G
Sbjct: 85 GPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGG 127
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 18/224 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +HAQ ++ D A+ +++T C S+E AR++FD + ++ +W +I
Sbjct: 279 KAVHAQCMNAGLVDDIRVATSLIRMYTTCG-----SIEGARRVFDNMKVRDVVSWTVMIE 333
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y+ + +F +F + P+ T ++ A A + IH F
Sbjct: 334 GYAENGNIEDAFGLFATM-QEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFG 392
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL++S +L+H YA CG + A VF + ++DVVSW++MI +VE G+ +A E + M
Sbjct: 393 TDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLM 452
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ N++PD VT + +L+AC L+ G+ I IK DL
Sbjct: 453 KRSNIEPDGVTYINLLNACGHLGALDVGM----EIYTQAIKADL 492
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 22/236 (9%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
G Q H + +QL ++ + KL++ C ++ AR++FD +
Sbjct: 76 GKQVRDHIIQGGRQLN-----------IYELNTLIKLYSICG-----NVTEARQIFDSVE 119
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ TWN LI Y+ ++F +F Q+V + P+ T V+ A + P G+
Sbjct: 120 NKTVVTWNALIAGYAQVGHVKEAFALFRQMV-DEGLEPSIITFLSVLDACSSPAGLNWGK 178
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+H F D I +L+ Y G + A VF + +DV ++N M+ G+ + G
Sbjct: 179 EVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSG 238
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+EKA EL+ M+ +KP++++ + +L C L +G V + G+ D+
Sbjct: 239 DWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDI 294
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 14/207 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYT 90
N + IH+Q+ F D ++ L + C +++ AR++FD +P+ ++ +
Sbjct: 374 ANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCG-----AIKDARQVFDAMPRRDVVS 428
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
W+ +I AY + ++F F L+ S P+ T ++ A VG I+
Sbjct: 429 WSAMIGAYVENGYGTEAFETF-HLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQA 487
Query: 150 FEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
+ DLV + N+LI A G + A +F + ++DV++WN+MI G+ G +A+
Sbjct: 488 IKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREAL 547
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAK 232
L+ M E +P+ VT V VLSAC++
Sbjct: 548 YLFDRMLKERFRPNSVTFVGVLSACSR 574
>gi|302801760|ref|XP_002982636.1| hypothetical protein SELMODRAFT_116842 [Selaginella moellendorffii]
gi|300149735|gb|EFJ16389.1| hypothetical protein SELMODRAFT_116842 [Selaginella moellendorffii]
Length = 567
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQP--NLYTWNTL 94
+R+HA ++ST +P+ + +++ C SL AR+ FD IP+ N+Y+W +
Sbjct: 69 RRVHAHIVSTGQSQNPFLGNLLVQMYGKCG-----SLGEARRAFDGIPESKRNVYSWGLM 123
Query: 95 IRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----- 147
I AY+ S Q+ +F +Q + L V+ + A + G+AIH
Sbjct: 124 ISAYAQSGHHKQAIDLFQTMQETKTMVVKADCVILASVLGSCAASGDLQTGKAIHEKISS 183
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
G + +LV+ +L+ YA CG +A A F + ++DV+SWN+M++ + + G AI L
Sbjct: 184 GCLDSNLVVETALLDMYAKCGKVAEARGTFDRMKERDVISWNAMLAAYAQTGHNTHAINL 243
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
Y M E V PDE T ++++C+ R L V + I ++G++ D
Sbjct: 244 YHGMCCEGVFPDEFTFSTIVTSCSSLRLLNL---VHAVIVESGMQHD 287
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR FD++ + ++ +WN ++ AY+ + + ++ + FP+EFT ++ + +
Sbjct: 209 ARGTFDRMKERDVISWNAMLAAYAQTGHNTHAINLYHGMCCEG-VFPDEFTFSTIVTSCS 267
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
R+ +H GM DD + LI YA + + +F +D V WN
Sbjct: 268 ---SLRLLNLVHAVIVESGMQHDDGIYCG-LIKSYAKLNQIEESERIF-----RDPVYWN 318
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++I+ G + + L+ M++E + PDEVT VL+ C + R G
Sbjct: 319 ALIAAHGLYGHTPRVLRLFSAMQLEGLAPDEVTFTSVLATCGRSRVARCG 368
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMI--GKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ N L+ Y CG L A F I K++V SW MIS + + G ++AI+L++ M+
Sbjct: 86 LGNLLVQMYGKCGSLGEARRAFDGIPESKRNVYSWGLMISAYAQSGHHKQAIDLFQTMQE 145
Query: 214 EN---VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
VK D V + VL +CA DL+ G + I + +L E
Sbjct: 146 TKTMVVKADCVILASVLGSCAASGDLQTGKAIHEKISSGCLDSNLVVE 193
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 12/245 (4%)
Query: 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL 73
HP+ TTL + L +Q +HA F D Y AS L S +
Sbjct: 387 HPDRTTLAIILSSLAGMMLLEGGRQ---VHAVSQKAVFRTDIYLASGLIG--MYSKCGKV 441
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A+++FD+I + ++ WN+++ S + ++F F ++ FP++F+ V+
Sbjct: 442 EMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKM-REKGMFPSQFSYATVLSC 500
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A+ G+ +H + +D + ++LI Y+ CGD+ A VF M+ K+ V+W
Sbjct: 501 CAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTW 560
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV-SSHIE 247
N MI G+ + G ++A+ LY +M KPD +T V VL+AC+ ++ GI + +S +
Sbjct: 561 NEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQ 620
Query: 248 KNGIK 252
++G++
Sbjct: 621 EHGVE 625
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 105/207 (50%), Gaps = 6/207 (2%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F+P + + A +E R+MFD + P+L +WNT++ YS ++ ++ +F
Sbjct: 320 FEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFR 379
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVC 167
++ + S + P+ TL ++ + A + G+ +H + F D+ +++ LI Y+ C
Sbjct: 380 EMQFRSVH-PDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKC 438
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G + MA +F I + D+V WNSM++G ++A +++M + + P + + VL
Sbjct: 439 GKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVL 498
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMD 254
S CAK L G V S I + G D
Sbjct: 499 SCCAKLSSLSQGRQVHSQIAREGYMND 525
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 20/183 (10%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A + F +P+PN ++ ++ + SD+ ++F +F ++ N + + +L V+ +
Sbjct: 162 AIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHV-DSVSLSSVLGVCS 220
Query: 136 RPV--QFRV------------GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCV 176
R +F + GQ +H + FE DL ++NSL+ YA G++ A +
Sbjct: 221 RGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMI 280
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
FV + + VVSWN MI+G+ + KAIE + M+ +PDE+T V +L AC K D+
Sbjct: 281 FVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDI 340
Query: 237 EFG 239
E G
Sbjct: 341 EAG 343
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 105/216 (48%), Gaps = 14/216 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K IHA ML + D + +++L + C ++++ +R++FDQ+P+ ++YTWN ++
Sbjct: 25 KLIHAHMLRSRLSDDTFLSNRLIEFYAKC-----NAIDASRRLFDQMPKRDIYTWNAILG 79
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP-VQFRVGQAIHGM-----F 150
AY + E + ++F ++ + N A V G+ HG+
Sbjct: 80 AYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGL 139
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
++++ + N+L+ YA C + A F + + + VS+ +M+ G + +A L+R
Sbjct: 140 DNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRL 199
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
M + D V++ VL C++ EFG+ S+ +
Sbjct: 200 MLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDV 235
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 86/172 (50%), Gaps = 2/172 (1%)
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA-AARPVQFRVG 143
+ +L+ N+L+ Y+ + + MIF+ + S N + K+ +++ +++
Sbjct: 255 ESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQR 314
Query: 144 QAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
HG D++ N L+ GD+ +F + + SWN+++SG+ + ++
Sbjct: 315 MQYHGFEPDEITYVNMLVACIKS-GDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKE 373
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
A++L+REM+ +V PD T+ ++LS+ A LE G V + +K + D+
Sbjct: 374 AVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDI 425
>gi|297834252|ref|XP_002885008.1| hypothetical protein ARALYDRAFT_478816 [Arabidopsis lyrata subsp.
lyrata]
gi|297330848|gb|EFH61267.1| hypothetical protein ARALYDRAFT_478816 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 101/206 (49%), Gaps = 8/206 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K L +IH ++ + D + +L +LS L +AR + TWN L R
Sbjct: 21 KHLLQIHGKIHVSSLQNDSFIIIELVRVSSLSLVKDLTFARTLLLHSSDSTPSTWNMLNR 80
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI------HGMF 150
YSSSD P++S + ++ PN+ T PF++KA A + G+ I HG F
Sbjct: 81 GYSSSDTPVESIWFYSEMERRGIN-PNKLTFPFLLKACASFLGLTAGRQIQVEVLKHG-F 138
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ D+ + N+LIH Y C A +F + ++ VSWNS+++ VE G F E + E
Sbjct: 139 DSDVYVGNNLIHLYGSCKKTYDARKMFDEMTDRNFVSWNSIMTALVENGKFNLVFECFCE 198
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDL 236
+ PDE TMVV+LSAC L
Sbjct: 199 IIGRRFCPDETTMVVLLSACCGNLSL 224
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 15/201 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++I ++L F D Y + L + C T+ ARKMFD++ N +WN+++
Sbjct: 127 RQIQVEVLKHGFDSDVYVGNNLIHLYGSCK-KTYD----ARKMFDEMTDRNFVSWNSIMT 181
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF-----RVGQAIHGMFE 151
A + + F F +++ + P+E T+ ++ A + + + + E
Sbjct: 182 ALVENGKFNLVFECFCEII-GRRFCPDETTMVVLLSACCGNLSLGKFHSQSRRVVVRELE 240
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + +L+ YA G L A VF + K+V +WN+MI G + GF E+A++L+ +M
Sbjct: 241 LNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWNAMIVGLAQYGFVEEALQLFAKM 300
Query: 212 EVEN-VKPDEVTMVVVLSACA 231
E+ V+P VT + VL AC+
Sbjct: 301 MKESTVRPKYVTFLGVLCACS 321
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LEYAR +F+++ N++TWN +I + ++ +F +++ S P T V
Sbjct: 257 GGLEYARLVFERMVDKNVWTWNAMIVGLAQYGFVEEALQLFAKMMKESTVRPKYVTFLGV 316
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMA 173
+ A + G E I +IH+ A+ L A
Sbjct: 317 LCACSHTALVDDGYKYFHEMEKAHKIKPMIIHYRAMVDILGRA 359
>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 100/168 (59%), Gaps = 7/168 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L +ARK+F+++P+ N+ +W T+I Y E + +F++++ + PNE T V
Sbjct: 207 GELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNV 266
Query: 131 IKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKK 183
+ A + GQ +H +++D ++++L++ Y+ CG+L++A +F V+I ++
Sbjct: 267 LGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQR 326
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
D+V WN MI+ + G +AIEL+ +M+ KP++V+ V +LSAC+
Sbjct: 327 DLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACS 374
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 12/196 (6%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
AL +E AR+ FD++P+ ++ +W T++ + S ++ +F ++ P
Sbjct: 109 ALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRM-------PERN 161
Query: 126 TLPFVIKAAARPVQFRVGQAI---HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ + R+ +A M E +L N++I + G+LA A VF + +
Sbjct: 162 VVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPE 221
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
K+VVSW +MI+G+V+ G E A++++ EM + +P+E T V VL AC+ L G
Sbjct: 222 KNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQ 281
Query: 242 VSSHIEKNGIKMDLTF 257
V I K+ + D TF
Sbjct: 282 VHLLISKS-VYQDRTF 296
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+E A ++F+ +P N+ +WNT+I Y + E ++ +F ++ + N
Sbjct: 51 LKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAAL 110
Query: 130 VIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
V + R + M + D++ +++ A G + A VF + +++VVSWN
Sbjct: 111 VQCGRVEEARRRFDE----MPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWN 166
Query: 190 SMISGFVEGGFFEKAIELYREMEVENV 216
+M++G+ + ++A +L+ M N+
Sbjct: 167 AMVTGYAKNMRLDEAFDLFERMPERNL 193
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-KDVVSWNSMISGFVEGGFFEKAIEL 207
M E D+V ++I Y CG + A +F + KDVV+W +M+SG+V E+A L
Sbjct: 1 MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERL 60
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ M V+NV V+ ++ K R+++ I
Sbjct: 61 FEVMPVKNV----VSWNTMIDGYGKNREVDKAI 89
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+V +++ Y + A +F ++ K+VVSWN+MI G+ + +KAIE++ M
Sbjct: 37 DVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMH 96
Query: 213 VENV 216
N+
Sbjct: 97 ERNM 100
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 13/228 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARK------MFDQIPQPNLYTW 91
LK+IHAQ+L ++ P + + L + ALS + + +F QIP P+ +
Sbjct: 31 HLKQIHAQILHSNT--TPENTNTLLSKLALSICTLSSSSSSLHYALSVFSQIPNPHTHFS 88
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
N L+R S S P ++ ++ L + + + F+ P ++KA ++ F G IHG+
Sbjct: 89 NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
F DD I LI YA C + A +F + D V+WN +I G+ + G ++ A+
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
L+ +M ++KPD V + VLSAC +L +G + ++ NG +D
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAID 256
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 126/242 (52%), Gaps = 17/242 (7%)
Query: 23 NNGHQRHPHFLTNQKQLKRIHAQMLSTDF---FFDPYSASKLFTPCA-LSTFSSL---EY 75
+NG+ H Q L ++A + D +D S+ L A LS ++ L +
Sbjct: 250 DNGYAIDSHL---QTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKD 306
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FDQ+ + +L W+ +I Y+ SD+P ++ +F +++ P++ T+ VI A +
Sbjct: 307 ARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRS-VPDQITMLSVISACS 365
Query: 136 RPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
IH F L ++N+LI YA CG+L A VF + +K+V+SW+S
Sbjct: 366 HVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSS 425
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV-SSHIEKN 249
MI+ F G + AI+L+R M+ N++P+ VT + VL AC +E G + SS I ++
Sbjct: 426 MINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEH 485
Query: 250 GI 251
GI
Sbjct: 486 GI 487
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 12/189 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+++ AR +FD+IP NL WN+LI Y+ S+E +++F + + P+E T+
Sbjct: 140 GNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF----GKMQAEGFEPDEVTI 195
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A ++ G+ IH M + + N L+ YA CGDLA A +F +
Sbjct: 196 ASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAH 255
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
++ WNSMISGF G ++A+E + ME + PDE+T + VLSACA + G+ +
Sbjct: 256 RNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEI 315
Query: 243 SSHIEKNGI 251
S +EK G+
Sbjct: 316 FSRMEKYGL 324
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 106/219 (48%), Gaps = 29/219 (13%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY---- 120
C + ++ +RK+FD +P+ N TWN +I Y + + + ++F ++ +
Sbjct: 8 CMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIE 67
Query: 121 --------------------FPNEF----TLPFVIKAAARPVQFRVGQAI-HGMFEDDLV 155
P+E T ++ AR + + + GM + +
Sbjct: 68 MIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFF 127
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+S+I Y G++ A +F I +++V+WNS+ISG+ + GF E+A+E + +M+ E
Sbjct: 128 AWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEG 187
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+PDEVT+ VLSAC++ L+ G + + GIK++
Sbjct: 188 FEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLN 226
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+I SL+ YA CG++ + VF + +++ V+WN+MI G++ G + A+ L+ +M +
Sbjct: 1 MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR 60
Query: 215 NVKPDEVTMVVVLSACAKKRDLE 237
VT + ++ A+ D E
Sbjct: 61 TA----VTWIEMIDGFARSGDTE 79
>gi|115452309|ref|NP_001049755.1| Os03g0283500 [Oryza sativa Japonica Group]
gi|24796822|gb|AAN64498.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108707537|gb|ABF95332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548226|dbj|BAF11669.1| Os03g0283500 [Oryza sativa Japonica Group]
gi|215737043|dbj|BAG95972.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 598
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 129/232 (55%), Gaps = 21/232 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IHA++++ + ASKL + S L AR++FD IPQP+L+ WN ++ + S
Sbjct: 34 RQIHARLVAASVTPSNFLASKLIS--LYSRADRLRDARRVFDSIPQPSLFAWNAILISLS 91
Query: 100 -SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK--AAARP-VQFRVGQAIHGM-----F 150
S +P + +F +S P+E TL +++ AA+ P + V +H + F
Sbjct: 92 LHSPDPSAAVRLF----ASSAVSPDEITLSTLLRSLAASGPALSPLVTGELHAVAFLRGF 147
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
DL +SN+LI YA GD+ A VF + ++DVVSWNS+IS G++ + ++L++E
Sbjct: 148 GSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLISACARAGWYRECLDLFQE 207
Query: 211 M------EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ + V P+ VT+ VL ACA+ + ++FGI V ++G+ MD+
Sbjct: 208 FVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRFAAESGLDMDMA 259
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 12/185 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+HA F D + ++ L T A + + AR +FD++P+ ++ +WN+LI A + +
Sbjct: 138 LHAVAFLRGFGSDLFVSNALIT--AYANAGDMRSARAVFDEMPRRDVVSWNSLISACARA 195
Query: 102 DEPIQSFMIFLQLVY-----NSPYFPNEFTLPFVIKAAA--RPVQFRVGQ---AIHGMFE 151
+ +F + V PN T+ V+ A A + V F +G A +
Sbjct: 196 GWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRFAAESGLD 255
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ + NS+I FYA CG L A + + +KD +S+++MI+G++ G E+ ++L+R+
Sbjct: 256 MDMAVWNSIIGFYAKCGRLQYARQLLDGMTRKDSISYSAMITGYMNNGHVEEGMQLFRQA 315
Query: 212 EVENV 216
+
Sbjct: 316 SARGI 320
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 12/167 (7%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E ++F Q + WN++I + + LQ + S PN TL V+
Sbjct: 305 VEEGMQLFRQASARGISMWNSVIAGLVQNGRQ-SDVLRLLQEMIASKVLPNSATLSIVMP 363
Query: 133 A--------AARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+ A+ G AI ++ + + ++LI YA G L A VF + +
Sbjct: 364 SVPSFSTLLGAKQAH---GYAIRNDYDQSIRLVSALIDAYAKAGFLDTARKVFKLTEHRS 420
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ W S+IS G +A+ L+ +M KPD VT VLSACA
Sbjct: 421 TIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLSACA 467
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 15/215 (6%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H TN + +IHAQ+L + D + A KL A S L A +F+ +P PN++
Sbjct: 29 HKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIA--AFSLCRHLASAVNVFNHVPHPNVHL 86
Query: 91 WNTLIRAYS-SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+N++IRA++ +S F F Q+ N FP+ FT PF++KA + P + + IH
Sbjct: 87 YNSIIRAHAHNSSHRSLPFNAFFQMQKNG-LFPDNFTYPFLLKACSGPSSLPLVRMIHAH 145
Query: 150 FE-----DDLVISNSLIHFYAVCGDLAM--AYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
E D+ + NSLI Y+ CG+ + A +F+ + ++DVV+WNSMI G V G +
Sbjct: 146 VEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQ 205
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
A +L+ EM D V+ +L AK +++
Sbjct: 206 GACKLFDEMP----DRDMVSWNTMLDGYAKAGEMD 236
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 7/172 (4%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C S ++ AR +FD+ P N+ W T+I Y+ ++ ++ ++ + P++
Sbjct: 258 CGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKM-EEAGMRPDD 316
Query: 125 FTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFV- 178
L ++ A A +G+ IH F + N+ I YA CG L A+ VF
Sbjct: 317 GFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSG 376
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
M+ KKDVVSWNSMI GF G EKA+EL+ M E +PD T V +L AC
Sbjct: 377 MMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCAC 428
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 35/183 (19%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L L+ A K+FD++P ++ +WNT++ Y+ + E +F +F ++ +
Sbjct: 197 GLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWR-------- 248
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
++V ++++ Y+ GD+ MA +F K+V
Sbjct: 249 ---------------------------NIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNV 281
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V W ++I+G+ E G +A ELY +ME ++PD+ ++ +L+ACA+ L G + +
Sbjct: 282 VLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHAS 341
Query: 246 IEK 248
+ +
Sbjct: 342 MRR 344
>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 558
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 113/212 (53%), Gaps = 15/212 (7%)
Query: 37 KQLKRIHAQMLSTDFF----FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
K+ K +H + F + S ++ C L L+ ARK+F+ + N+ W
Sbjct: 227 KEGKCVHGLSIRRSFIDQSGYLEASIIDMYVKCRL-----LDNARKLFETSVERNVVMWT 281
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-- 150
TLI ++ + +++ +F Q++ S PN TL ++ + + R G+++HG
Sbjct: 282 TLISGFAKCERAVEAIDLFRQMLGES-ILPNHCTLAAILVSCSSLGSLRHGKSVHGYMIR 340
Query: 151 ---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
E D V S I YA CG++ MA VF M+ K++V+SW+SMI+ F G FE+A++
Sbjct: 341 NGIEMDAVNFTSFIDTYARCGNIQMARKVFDMMPKRNVISWSSMINAFGINGLFEEALDC 400
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ M+ +N+ P+ VT V +LSAC+ +++ G
Sbjct: 401 FDNMKSQNLVPNSVTFVSLLSACSHSGNVKEG 432
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 9/219 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH + D Y A L A F ++E A+K+FD++P N W L++ Y
Sbjct: 131 IHGLAMKNGLDKDDYVAPSLVEMYA--QFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKY 188
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FEDDLV 155
+ + F +F L+ ++ + TL ++KA + G+ +HG+ +
Sbjct: 189 SKDSEVFRLFY-LMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGY 247
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ S+I Y C L A +F +++VV W ++ISGF + +AI+L+R+M E+
Sbjct: 248 LEASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGES 307
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ P+ T+ +L +C+ L G V ++ +NGI+MD
Sbjct: 308 ILPNHCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMD 346
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 16/203 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP--QPNLYTWNTLIRA 97
+++HA+++ F + S L A + L++A FD+IP + N ++WNT++
Sbjct: 24 QQVHAKVIIHGFQDEVVLGSSLTN--AYIQSNRLDFATASFDRIPCWKRNRHSWNTILSG 81
Query: 98 YSSSDEPIQSFMIFLQLVYNSPY----FPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
YS S S ++ L+YN + F L F IKA G IHG+
Sbjct: 82 YSKSKSCYYSDVL---LLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGMLIHGLAMKN 138
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ D ++ SL+ YA G + A VF + ++ V W ++ G+++ + L+
Sbjct: 139 GLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYSKDSEVFRLF 198
Query: 209 REMEVENVKPDEVTMVVVLSACA 231
M + D +T++ ++ AC
Sbjct: 199 YLMRDTGLALDALTLICLVKACG 221
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 146 IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI--GKKDVVSWNSMISGFVEGG--FF 201
IHG F+D++V+ +SL + Y L A F I K++ SWN+++SG+ + ++
Sbjct: 32 IHG-FQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCWKRNRHSWNTILSGYSKSKSCYY 90
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ LY M D +V + AC LE G+ + KNG+ D
Sbjct: 91 SDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGMLIHGLAMKNGLDKD 143
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 121/234 (51%), Gaps = 14/234 (5%)
Query: 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFT-PCALSTFSSLEYARKMFDQIPQPNL 88
PH ++L++ HA ++ T +KL T CA S+ Y R++F + P+
Sbjct: 21 PHL----RRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAG---SIAYTRRLFRSVSDPDS 73
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+ +N+LI+A S+ + + + ++++ S P+ +T VIKA A R+G +H
Sbjct: 74 FLFNSLIKASSNFGFSLDAVFFYRRMLH-SRIVPSTYTFTSVIKACADLSLLRLGTIVHS 132
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
+ + + +L+ FYA +A VF + ++ +++WNSMISG+ + G +
Sbjct: 133 HVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASE 192
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
A+E++ +M +PD T V VLSAC++ L+ G W+ I GI+M++
Sbjct: 193 AVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVL 246
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 44 AQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++ + F Y AS F AL TF + ARK+FD++PQ ++ WN++I Y
Sbjct: 127 GTIVHSHVFVSGY-ASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYE 185
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
+ ++ +F ++ S P+ T V+ A ++ +G +H ++
Sbjct: 186 QNGLASEAVEVFNKM-RESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNV 244
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V++ SL++ ++ CGD+ A VF + + +VVSW +MISG+ G+ +A+E++ M+
Sbjct: 245 VLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKAC 304
Query: 215 NVKPDEVTMVVVLSACA 231
V P+ VT V VLSACA
Sbjct: 305 GVVPNRVTYVAVLSACA 321
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 16/226 (7%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY---ARKMFDQIPQ--PNLYTWNTLIRA 97
HA L D + + L ++ +SS Y AR + D P+ ++ +WNT+I
Sbjct: 28 HALSLKLSLASDSFVLNAL-----INMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAG 82
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y P ++ F Q+ +E TL V+ A AR +VG H + FE
Sbjct: 83 YIRGGMPNKALQSFHQMAKEQVRL-DEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEI 141
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ I +SL+ YA CG + A VF + +++VV W SMI+G + G F++A++L+R+M+
Sbjct: 142 NCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQ 201
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ VK D+ T+ V+S+C + L+ G ++ ++ + +G+ +L+ +
Sbjct: 202 IAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVK 247
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 15/206 (7%)
Query: 43 HAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
HA ++ F + Y S L + C + +E AR++F+++P+ N+ W ++I +
Sbjct: 131 HALVVLNGFEINCYIGSSLVSMYAKCGM-----VEEARRVFNRMPERNVVCWTSMIAGCT 185
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
S ++ +F + + ++ T+ V+ + + +G+ +H + +L
Sbjct: 186 QSGRFKEAVDLFRDMQI-AGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKEL 244
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ NSLI Y+ CGD+ AY +F + K+DV +W MI GF G +A++L+ +ME E
Sbjct: 245 SVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGE 304
Query: 215 N-VKPDEVTMVVVLSACAKKRDLEFG 239
+ V P+EV + VL+AC+ +E G
Sbjct: 305 DKVMPNEVIFLGVLTACSHGGLVEQG 330
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 117/206 (56%), Gaps = 6/206 (2%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
L+++H ++ D + S L S + LE A ++FD++ +L W+++I +
Sbjct: 82 LRQLHCCIIKIGLDSDVFVRSALID--VYSRWGELENALRVFDEMVTGDLVVWSSIIAGF 139
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---MFEDDLV 155
+ + + ++ +F ++ + + + TL V++A +G+ +H ++ DL+
Sbjct: 140 AQNSDGDEALRLFKRM-KRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYDQDLI 198
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
++N+L+ Y CG L A VFV + +KDV+SW++MI+G + G+ ++A++L+ M+V
Sbjct: 199 LNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLG 258
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIW 241
+KP+ VT+V VL AC+ +E G++
Sbjct: 259 IKPNYVTIVGVLFACSHAGLVEEGLY 284
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 9/184 (4%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFT 126
F L A+ +FD++P N+ +W T+I AYS++ D+ ++ FL L+ PN FT
Sbjct: 13 FGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALE----FLVLMLREGVRPNMFT 68
Query: 127 LPFVIKAAARPVQFRVGQA--IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V++A R I + D+ + ++LI Y+ G+L A VF + D
Sbjct: 69 YSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGD 128
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+V W+S+I+GF + ++A+ L++ M+ + T+ VL AC LE G V
Sbjct: 129 LVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHV 188
Query: 245 HIEK 248
H+ K
Sbjct: 189 HVLK 192
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
N LI+ Y G L A VF + ++VVSW +MIS + +KA+E M E V+
Sbjct: 4 NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63
Query: 218 PDEVTMVVVLSAC 230
P+ T VL AC
Sbjct: 64 PNMFTYSSVLRAC 76
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 52/249 (20%)
Query: 6 TPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPC 65
T + S+ R L + G Q H H L + L + + D Y
Sbjct: 165 TTLTSVLRACTGLAL-LELGRQVHVHVLKYDQDL-------ILNNALLDMYCKC------ 210
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
SLE A +F ++ + ++ +W+T+I + + ++ +F + PN
Sbjct: 211 -----GSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIK-PNYV 264
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
T+ V+ A + G+ E+ L +S+ + + C+ ++G+
Sbjct: 265 TIVGVLFACSHA----------GLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGR--- 311
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
G +A++L EME E PD VT +L+AC R+++ I H
Sbjct: 312 ------------AGRLSEAVDLINEMECE---PDAVTWRALLNACRVHRNVDVAI----H 352
Query: 246 IEKNGIKMD 254
K +++D
Sbjct: 353 AAKQILRLD 361
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 104/181 (57%), Gaps = 7/181 (3%)
Query: 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
K+ K++HA + T+ F P +S L + A ++LEY +F++I +P L +N LI
Sbjct: 21 DKETKQLHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYVLSIFNKIQEPALVLYNILI 80
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
+ Y + + +F QL++ + P+ FTLP VIK AR + G+ IHG+ F
Sbjct: 81 KCYIQNQLSHDAITLFSQLLH--EFNPDGFTLPCVIKGCARLHATKEGKQIHGLVLKLGF 138
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ +S+SL++ Y+ C D+ A VF+ + KD+VSWNS+I G+V+ G E ++L+ E
Sbjct: 139 GLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGYVKCGQVELGMKLFEE 198
Query: 211 M 211
M
Sbjct: 199 M 199
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A ++FD++P+ NL +WN+++ Y ++ ++ +FL ++ + PN TL A +
Sbjct: 254 ASELFDKMPEKNLISWNSMVAGYDLNERFKEALDLFLTML-ERDFTPNHATLVSTFSAVS 312
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ +H F+ D V++ SLI+ Y+ CG++ A VF +I KK + W +
Sbjct: 313 GLASLSTGKWMHSYMVKNGFQLDGVLATSLINMYSKCGNIESALSVFQLITKKKLGHWTA 372
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+I G G + A+E + EM ++P +T + VL+AC+ +E G
Sbjct: 373 IIVGLGMHGMADNALEFFHEMCRTGMRPHAITFIGVLNACSHAGLVEDG 421
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 110/219 (50%), Gaps = 8/219 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+ K+IH +L F + + +S L S ++ A+K+F + +L +WN+LI
Sbjct: 124 KEGKQIHGLVLKLGFGLNKFVSSSLVN--MYSKCKDIDSAKKVFLSMDDKDLVSWNSLID 181
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-HGMFEDDLV 155
Y + +F ++ + F+ +I ++ + V + + M +LV
Sbjct: 182 GYVKCGQVELGMKLFEEMPER-----DLFSWTVLIDGFSKCGKVDVARELFDKMPSRNLV 236
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
N++I+ Y GD +A +F + +K+++SWNSM++G+ F++A++L+ M +
Sbjct: 237 SWNAMINGYMKAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERFKEALDLFLTMLERD 296
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
P+ T+V SA + L G W+ S++ KNG ++D
Sbjct: 297 FTPNHATLVSTFSAVSGLASLSTGKWMHSYMVKNGFQLD 335
>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
Length = 310
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 105/189 (55%), Gaps = 6/189 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S LE A +F Q+ + ++ +W T++ Y+ + + ++ ++F Q++ + P+E T+
Sbjct: 118 SKLRDLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVFNQMI-KTGICPDEVTM 176
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
VI A A +G+ IH F+ D+ I +SLI YA CG L + VF + +
Sbjct: 177 ATVISACAHLGALDLGKEIHLYVMQNGFDLDVYIGSSLIDMYAKCGSLDRSLLVFFKLQE 236
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
K++ WNS+I G G+ ++A+E++R+M E +KP+ VT + VL+ACA +E G+ +
Sbjct: 237 KNLFCWNSVIEGLAAHGYAKEALEMFRKMGREKIKPNGVTFISVLNACAHAGLVEEGLAL 296
Query: 243 SSHIEKNGI 251
+ GI
Sbjct: 297 RKKAPERGI 305
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 102/217 (47%), Gaps = 16/217 (7%)
Query: 46 MLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNL----YTWNTLIRAYSSS 101
ML + Y+ S L C L+ S +++ + + + L + L+ YS+
Sbjct: 1 MLRSKILPSSYTFSSLIKACGLA--SEVKFGEVVHGHVWRHGLESHVFVQTALVDFYSTV 58
Query: 102 DEPIQSFMIFLQLVYNSPYFPNE--FTLPFVIKAAARPVQFRVGQAIHGMF-EDDLVISN 158
I+S +F ++ P F ++ + AR + + M E + N
Sbjct: 59 GRIIESKKVFDEM-------PERDIFAWATMVTSLARIGDMSSARRLFDMMPEKNTAAWN 111
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
+LI+ Y+ DL A +F + ++D++SW +M++ + + F +A+ ++ +M + P
Sbjct: 112 TLIYGYSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVFNQMIKTGICP 171
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
DEVTM V+SACA L+ G + ++ +NG +D+
Sbjct: 172 DEVTMATVISACAHLGALDLGKEIHLYVMQNGFDLDV 208
>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 1 [Cucumis sativus]
gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 2 [Cucumis sativus]
Length = 517
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 12/221 (5%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
FL ++ IHA ++ + D + + L L + A +FD IP P++ +W
Sbjct: 75 FLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILD--GDVSSASLIFDSIPDPDVVSW 132
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF- 150
++I S ++ FL + PN TL + A + ++G+AIHG+
Sbjct: 133 TSIISGLSKLGFEKEALSKFLSMNVR----PNSTTLVTALSACSSLRCLKLGKAIHGLRM 188
Query: 151 ----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
E+++++ N+L+ FY C L A +F + K+DVVSW +MI G+ + G E+A+
Sbjct: 189 RTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVR 248
Query: 207 LYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+++ M V P+E T+V VLSAC+ L G WV S+I
Sbjct: 249 VFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYI 289
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 11/240 (4%)
Query: 9 ISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS 68
+S+ PN TTL L K + + + L+ + + + CA
Sbjct: 153 LSMNVRPNSTTLVTALSACSSLRCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAY- 211
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
L A +F+++P+ ++ +W T+I Y+ S ++ +F +V+ PNE TL
Sbjct: 212 ----LRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLV 267
Query: 129 FVIKAAARPVQFRVGQAIHGMFED--DLVI----SNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A + +GQ +H D++I N+LI+ Y CG++ MA +F I
Sbjct: 268 NVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKAIEH 327
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
KD+VSW+++ISG G ++A L+ M V V PD++T + +LSAC+ + G+ V
Sbjct: 328 KDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGVSPDDITFLGLLSACSHGGLINQGMMV 387
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 11/161 (6%)
Query: 84 PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG 143
P+P+++ N L+ + +S P ++ Q++ P N FT + +KA Q + G
Sbjct: 26 PKPHIF--NPLLGSLVNSIFPENGLFLYNQML-RYPSSHNHFTFTYALKACCFLHQTQKG 82
Query: 144 QAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
IH D+ I NSL+HFY + GD++ A +F I DVVSW S+ISG +
Sbjct: 83 LEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKL 142
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
GF ++A+ + M NV+P+ T+V LSAC+ R L+ G
Sbjct: 143 GFEKEALSKFLSM---NVRPNSTTLVTALSACSSLRCLKLG 180
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 12/245 (4%)
Query: 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL 73
HP+ TTL + L +Q +HA F D Y AS L S +
Sbjct: 416 HPDRTTLAIILSSLAGMMLLEGGRQ---VHAVSQKAVFRTDIYLASGLIG--MYSKCGKV 470
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A+++FD+I + ++ WN+++ S + ++F F ++ FP++F+ V+
Sbjct: 471 EMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKM-REKGMFPSQFSYATVLSC 529
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A+ G+ +H + +D + ++LI Y+ CGD+ A VF M+ K+ V+W
Sbjct: 530 CAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTW 589
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV-SSHIE 247
N MI G+ + G ++A+ LY +M KPD +T V VL+AC+ ++ GI + +S +
Sbjct: 590 NEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQ 649
Query: 248 KNGIK 252
++G++
Sbjct: 650 EHGVE 654
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 6/189 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E R+MFD + P+L +WNT++ YS ++ ++ +F ++ + S + P+ TL +
Sbjct: 367 GDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVH-PDRTTLAII 425
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ + A + G+ +H + F D+ +++ LI Y+ CG + MA +F I + D+
Sbjct: 426 LSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDI 485
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V WNSM++G ++A +++M + + P + + VLS CAK L G V S
Sbjct: 486 VCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQ 545
Query: 246 IEKNGIKMD 254
I + G D
Sbjct: 546 IAREGYMND 554
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 112/245 (45%), Gaps = 43/245 (17%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K IHA ML + D + +++L + C ++++ +R++FDQ+P+ ++YTWN ++
Sbjct: 25 KLIHAHMLRSRLSDDTFLSNRLIEFYAKC-----NAIDASRRLFDQMPKRDIYTWNAILG 79
Query: 97 AYSSSDEPIQSFMIFLQL--------------------------VY----NSPYFPNEFT 126
AY + E + ++F ++ VY + P FT
Sbjct: 80 AYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFT 139
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
L V+ A V G+ HG+ ++++ + N+L+ YA C + A F +
Sbjct: 140 LASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVP 199
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+ + VS+ +M+ G + +A L+R M + D V++ VL C++ EFG+
Sbjct: 200 EPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLH 259
Query: 242 VSSHI 246
S+ +
Sbjct: 260 DSNDV 264
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 20/183 (10%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A + F +P+PN ++ ++ + SD+ ++F +F ++ N + + +L V+ +
Sbjct: 191 AIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHV-DSVSLSSVLGVCS 249
Query: 136 RPV--QFRV------------GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCV 176
R +F + GQ +H + FE DL ++NSL+ YA G++ A +
Sbjct: 250 RGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMI 309
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
FV + + VVSWN MI+G+ + KAIE + M+ +PDE+T V +L AC K D+
Sbjct: 310 FVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDI 369
Query: 237 EFG 239
E G
Sbjct: 370 EAG 372
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 86/172 (50%), Gaps = 2/172 (1%)
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA-AARPVQFRVG 143
+ +L+ N+L+ Y+ + + MIF+ + S N + K+ +++ +++
Sbjct: 284 ESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQR 343
Query: 144 QAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
HG D++ N L+ GD+ +F + + SWN+++SG+ + ++
Sbjct: 344 MQYHGFEPDEITYVNMLVACIK-SGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKE 402
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
A++L+REM+ +V PD T+ ++LS+ A LE G V + +K + D+
Sbjct: 403 AVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDI 454
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 14/227 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KR+H + D FD + ++ L + C S+ A +F ++ ++ +WNT+I
Sbjct: 417 KRVHEWIKENDMGFDIFVSNALMDMYAKCG-----SMREAELVFSEMRVKDIISWNTVIG 471
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
YS + ++ +F L+ + P+E T+ V+ A A F G+ IHG +
Sbjct: 472 GYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 531
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D ++NSL+ YA CG L +A +F I KD+VSW MI+G+ GF ++AI L+ +M
Sbjct: 532 SDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQM 591
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
++PDE++ V +L AC+ ++ G W +I ++ K++ T E
Sbjct: 592 RQAGIEPDEISFVSLLYACSHSGLVDEG-WRFFNIMRHECKIEPTVE 637
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ ARK+FD++ + ++ +WN++I Y S+ + +F+Q+++ S + T+ V
Sbjct: 246 VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLF-SGIEIDLATIVSVFA 304
Query: 133 AAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A +G+A+H F + N+L+ Y+ CGDL A VF + + VVS
Sbjct: 305 GCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVS 364
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+ SMI+G+ G +A++L+ EME E + PD T+ VL+ CA+ R L+ G V I+
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIK 424
Query: 248 KNGIKMDL 255
+N + D+
Sbjct: 425 ENDMGFDI 432
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 14/211 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K K + + F D SKL +T C L+ A ++FDQ+ WN
Sbjct: 111 KDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCG-----DLKEASRVFDQVKIEKALFWNI 165
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
L+ + S + S +F +++ +S + +T V K+ + G+ +HG
Sbjct: 166 LMNELAKSGDFSGSIGLFKKMM-SSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKS 224
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F + + NSL+ FY + A VF + ++DV+SWNS+I+G+V G EK + ++
Sbjct: 225 GFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVF 284
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+M ++ D T+V V + CA R + G
Sbjct: 285 VQMLFSGIEIDLATIVSVFAGCADSRLISLG 315
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 81/195 (41%), Gaps = 12/195 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+F +L T S + FD+ ++ NT +R + S +++ + L +
Sbjct: 38 IFNRASLRTVSDRADSITTFDR----SVTDANTQLRRFCESGN-LKNAVKLLHVSGKWDI 92
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYC 175
P TL V++ A + G+ + D + + L Y CGDL A
Sbjct: 93 DPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASR 150
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + + + WN +++ + G F +I L+++M V+ D T V + + R
Sbjct: 151 VFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 210
Query: 236 LEFGIWVSSHIEKNG 250
+ G + +I K+G
Sbjct: 211 VNGGEQLHGYILKSG 225
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 120/223 (53%), Gaps = 14/223 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
++ +R+HA M+ T + Y ++L + C SL AR +FD +P+ N+ +W
Sbjct: 75 REGQRVHAHMIKTHYLPCVYLRTRLIVFYVKC-----DSLRDARHVFDVMPERNVVSWTA 129
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+I AYS Q+ +F+Q++ S PNEFT V+ + F +G+ IH
Sbjct: 130 MISAYSQRGYASQALSLFVQML-RSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKL 188
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+E + + +SL+ YA G + A +F + ++DVVS ++ISG+ + G E+A+EL+
Sbjct: 189 NYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELF 248
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
R ++ E ++ + VT VL+A + L+ G V +H+ ++ +
Sbjct: 249 RRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEV 291
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 9/198 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH+ ++ ++ Y S L A + AR +F +P+ ++ + +I Y+
Sbjct: 179 RQIHSHIIKLNYEAHVYVGSSLLDMYAKD--GKIHEARGIFQCLPERDVVSCTAIISGYA 236
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----L 154
++ +F +L N T V+ A + G+ +H +
Sbjct: 237 QLGLDEEALELFRRL-QREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYV 295
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ NSLI Y+ CG+L A +F + ++ V+SWN+M+ G+ + G + +EL+ M E
Sbjct: 296 VLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDE 355
Query: 215 N-VKPDEVTMVVVLSACA 231
N VKPD VT++ VLS C+
Sbjct: 356 NKVKPDSVTVLAVLSGCS 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 130 VIKAAARPVQFRVGQAIHG-MFEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ R R GQ +H M + + + LI FY C L A VF ++ +++
Sbjct: 64 VLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERN 123
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VVSW +MIS + + G+ +A+ L+ +M +P+E T VL++C G + S
Sbjct: 124 VVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHS 183
Query: 245 HIEK 248
HI K
Sbjct: 184 HIIK 187
>gi|302798965|ref|XP_002981242.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
gi|300151296|gb|EFJ17943.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
Length = 734
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 110/233 (47%), Gaps = 18/233 (7%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS---LEYARKMFDQIPQPNLYTW 91
N + +R+H D Y S C + ++ L A+ FD+I N + W
Sbjct: 29 NVSEGRRLH-----DDLRRSGYGDSSYLRRCVVQMYAKCGCLADAKAAFDEIADKNDFVW 83
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
N +I Y+ S + ++ L+L + PN F + A A G+ IH
Sbjct: 84 NLMISGYARSGKNREA----LELFHKMDIPPNGFIFASALAACAGLGDLEQGREIHKRVL 139
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
D+V+ NSL+ YA CG + +F + +K++VSWN+MIS FV+ + E+A+
Sbjct: 140 ESPSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMISAFVQCDYPEQAL 199
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
ELY M+ E ++P+ +L+ACA +LE G + I G++ D+ E
Sbjct: 200 ELYHRMKRERLEPNGFVFASLLTACASLGNLELGSSIHQRITSLGLQRDIVME 252
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 23/212 (10%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYAR--------KMFDQIP 84
L + +Q + IH ++L + P AS + +L T YAR K+FD +P
Sbjct: 125 LGDLEQGREIHKRVLES-----PSIASDVVVQNSLVTM----YARCGSVLEGIKIFDAMP 175
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ NL +WN +I A+ D P Q+ ++ ++ PN F ++ A A +G
Sbjct: 176 RKNLVSWNAMISAFVQCDYPEQALELYHRM-KRERLEPNGFVFASLLTACASLGNLELGS 234
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+IH + D+V+ N+LI+ Y+ CG + A VF + +DV +W SMI+G+ + G
Sbjct: 235 SIHQRITSLGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLG 294
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F +A Y M + V P T V +LSAC+
Sbjct: 295 FGSEAFAFYDGMRRDCVSPTSATFVALLSACS 326
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A S +E ARK+FD++ ++ TW +I+ Y+ + + +F ++ P+
Sbjct: 457 AYSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVE-PDSV 515
Query: 126 TLPFVIKAAA-----RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T V++A + R V R+ A G D + N LI+ YA CG + A +F +
Sbjct: 516 TFSSVLQACSNLEDGREVHARILAAQGGKMSD--FLGNGLINMYARCGSMRDARQIFESM 573
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ +SW+++++ G + I+ YR M E V PD VT++ +L++C+
Sbjct: 574 DRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLIAILNSCS 624
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 99/195 (50%), Gaps = 16/195 (8%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S SLE A +F ++ Q + +W+ ++ +++ +P ++ +F Q++ + +L
Sbjct: 358 SRCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQFGDPGKALTLFRQMILEGM----QLSL 413
Query: 128 PF---VIKAAARPVQFRVGQAIHGMFE----DDL-VISNSLIHFYAVCGDLAMAYCVFVM 179
P ++A + R+ + I + + D + I L+ Y+ CGD+ A +F
Sbjct: 414 PTFCSALQACSLKRDSRLSKTIRELIDWSGIDKMDSIRADLVSAYSKCGDMEEARKIFDR 473
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ +DV++W MI G+ + G + A+EL+ M+ E V+PD VT VL AC+ +LE G
Sbjct: 474 MESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACS---NLEDG 530
Query: 240 IWVSSHI-EKNGIKM 253
V + I G KM
Sbjct: 531 REVHARILAAQGGKM 545
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 10/193 (5%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A ++F + +++TW ++I Y+ ++F F + P T
Sbjct: 260 SKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGFGSEAF-AFYDGMRRDCVSPTSATF 318
Query: 128 PFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ A + Q G+ +H FE V+ +L+ Y+ CG L A +F + +
Sbjct: 319 VALLSACSTLEQ---GKHLHEEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQ 375
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
KD VSW++M++ + G KA+ L+R+M +E ++ T L AC+ KRD +
Sbjct: 376 KDYVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTI 435
Query: 243 SSHIEKNGI-KMD 254
I+ +GI KMD
Sbjct: 436 RELIDWSGIDKMD 448
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 129/267 (48%), Gaps = 31/267 (11%)
Query: 13 RHPNPTTLTVNNGHQRHP---------HFLTN--QKQL----KRIHAQMLST----DFFF 53
RH P V+N HQ P L N +K+L KRIHAQM+ D F
Sbjct: 5 RHCGPDREDVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFL 64
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
S L + S L+ A ++F ++P+ ++ +WN+LI Y+ ++F +F +
Sbjct: 65 -----SNLLINMYVKCRSVLD-AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEE 118
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG 168
+ N+ + PN+ T ++ A P + G+ IH ++ D + NSL+ Y CG
Sbjct: 119 M-QNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCG 177
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
DL A VF I +DVVS+N+M+ + + + ++ + L+ +M E + PD+VT + +L
Sbjct: 178 DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLD 237
Query: 229 ACAKKRDLEFGIWVSSHIEKNGIKMDL 255
A L+ G + + G+ D+
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGLNSDI 264
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 102/192 (53%), Gaps = 6/192 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L AR++F +P+ +L +WN +I Y+ ++ ++ ++ Q+ + P T +
Sbjct: 379 GDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM-QSEGVKPGRVTFLHL 437
Query: 131 IKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A + G+ IH + + ++N+L++ Y CG L A VF +DV
Sbjct: 438 LSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDV 497
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+SWNSMI+G + G +E A +L++EM+ E ++PD +T VLS C LE G +
Sbjct: 498 ISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGR 557
Query: 246 IEKNGIKMDLTF 257
I ++G+++D+
Sbjct: 558 ITESGLQLDVNL 569
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 8/218 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
KRIH + D + L T C ++ A++ F ++ +N LI A +
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCV--RCGDVDSAKQAFKGTADRDVVVYNALIAALA 306
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFED----DL 154
+++F + ++ + N T ++ A + G+ IH + ED D+
Sbjct: 307 QHGHNVEAFEQYYRMRSDGVAL-NRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDV 365
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I N+LI YA CGDL A +F + K+D++SWN++I+G+ +A+ LY++M+ E
Sbjct: 366 QIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSE 425
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
VKP VT + +LSACA G + I ++GIK
Sbjct: 426 GVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIK 463
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 101/196 (51%), Gaps = 8/196 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++ A +L++ + D + L + A S S+ AR++FD++P ++ +WN +I Y+
Sbjct: 653 KKVIAYILNSGYELDTGVGNALIS--AYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYA 710
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDL 154
+ Q+ + F + PN+F+ ++ A + G+ +H + D+
Sbjct: 711 QNGLG-QTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDV 769
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +LI YA CG A VF I +K+VV+WN+MI+ + + G KA+ + ME E
Sbjct: 770 RVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKE 829
Query: 215 NVKPDEVTMVVVLSAC 230
+KPD T +LSAC
Sbjct: 830 GIKPDGSTFTSILSAC 845
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 8/220 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH +L + + + A+ L SL A+ +F+ ++ +WN++I ++
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMN--MYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA 508
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
++ +F Q + N P+ T V+ P +G+ IHG + D+
Sbjct: 509 QHGSYETAYKLF-QEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDV 567
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+LI+ Y CG L A VF + +DV+SW +MI G + G KAIEL+ +M+ E
Sbjct: 568 NLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNE 627
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+P + T +L C L+ G V ++I +G ++D
Sbjct: 628 GFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELD 667
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 109/224 (48%), Gaps = 14/224 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+IH ++ + D + L + C SL+ AR +F + ++ +W +I
Sbjct: 552 KQIHGRITESGLQLDVNLGNALINMYIRCG-----SLQDARNVFHSLQHRDVMSWTAMIG 606
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-----HGMFE 151
+ E +++ +F Q+ N + P + T ++K G+ + + +E
Sbjct: 607 GCADQGEDMKAIELFWQM-QNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYE 665
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + N+LI Y+ G + A VF + +D+VSWN +I+G+ + G + A+E +M
Sbjct: 666 LDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQM 725
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ ++V P++ + V +L+AC+ LE G V + I K ++ D+
Sbjct: 726 QEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDV 769
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 8/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH+Q++ + DP + L + L AR++F I ++ ++NT++ Y+
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLS--MYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ +F Q+ + P++ T ++ A P G+ IH + D+
Sbjct: 206 QKAYVKECLGLFGQMS-SEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDI 264
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +L+ CGD+ A F +DVV +N++I+ + G +A E Y M +
Sbjct: 265 RVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSD 324
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V + T + +L+AC+ + LE G + SHI ++G D+
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDV 365
>gi|449442080|ref|XP_004138810.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
gi|449490224|ref|XP_004158542.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
Length = 619
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 7/223 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+L+ +HA +L F Y + L + + L ARK+FD++P ++ TW +I
Sbjct: 104 KKLRAVHAFILRNFTSFGIYVGNNLLS--SYLRLGMLVDARKVFDEMPMRSVVTWTAIIN 161
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----ED 152
Y D ++ +F V S N ++ A+ + F +G+ IHG+
Sbjct: 162 GYIDLDLTEEALALFSDSV-KSGVLANGQMFVCILNLCAKRLDFELGRQIHGVIVKGNRG 220
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+L++ +++I+FYA C D++ A+ F + ++DVV W SMI+ + G +AI ++ M
Sbjct: 221 NLIVDSAIIYFYAQCKDISSAFVAFERMRRRDVVCWTSMITSCSQQGLGREAISMFSNML 280
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ P+E ++ VL AC ++R+L+ G + I K IK D+
Sbjct: 281 SDEFLPNEFSVCSVLKACGEERELKIGRQLHGLIIKKIIKNDV 323
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 100/181 (55%), Gaps = 6/181 (3%)
Query: 80 FDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139
F+++ + ++ W ++I + S ++ +F ++ + + PNEF++ V+KA +
Sbjct: 245 FERMRRRDVVCWTSMITSCSQQGLGREAISMFSNML-SDEFLPNEFSVCSVLKACGEERE 303
Query: 140 FRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
++G+ +HG+ ++D+ + SL+ YA CG+LA + VF + ++ V+W S+I+G
Sbjct: 304 LKIGRQLHGLIIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFDGMRNRNTVTWTSIIAG 363
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ G E+A+ L+R M+ + + + +T+V +L AC G V + I KN + +
Sbjct: 364 YAREGLGEEALNLFRLMKRQRIPANNLTIVSILRACGSIEASLTGREVHAQIVKNSFQTN 423
Query: 255 L 255
+
Sbjct: 424 I 424
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 12/212 (5%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
I +++ D F S ++ C +L +R++FD + N TW ++I Y+
Sbjct: 314 IIKKIIKNDVFVGT-SLVDMYAKCG-----NLADSREVFDGMRNRNTVTWTSIIAGYARE 367
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
++ +F +L+ N T+ +++A G+ +H F+ ++ I
Sbjct: 368 GLGEEALNLF-RLMKRQRIPANNLTIVSILRACGSIEASLTGREVHAQIVKNSFQTNIHI 426
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
++L+ FY C + A V ++ +DVVSW ++ISG G +A+E + M E V
Sbjct: 427 GSTLVWFYCKCRNQLKASMVLQLMPLRDVVSWTAIISGCAHLGHESEALEFLKNMIEEGV 486
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+P+ T L ACAK + G + S K
Sbjct: 487 EPNSFTYSSTLKACAKMEAVLQGKMIHSSANK 518
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 14/200 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ +HAQ++ F + + S L + C +S+ + +P ++ +W +I
Sbjct: 409 REVHAQIVKNSFQTNIHIGSTLVWFYCKCRNQLKASM-----VLQLMPLRDVVSWTAIIS 463
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
+ ++ + FL+ + PN FT +KA A+ G+ IH +
Sbjct: 464 GCAHLGHESEA-LEFLKNMIEEGVEPNSFTYSSTLKACAKMEAVLQGKMIHSSANKTSAL 522
Query: 157 SN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
SN +LI+ YA CG + A VF + +++VSW +MI + G +A++L M
Sbjct: 523 SNVFVGSALIYMYAKCGYVTEASQVFDSMPVRNLVSWKAMILCYARNGLCREALKLMYRM 582
Query: 212 EVENVKPDEVTMVVVLSACA 231
+ E + D+ + V AC
Sbjct: 583 QAEGFEVDDYILGTVYGACG 602
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 6/176 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F +E A ++F ++ L TWN +I Y + +F ++ + PN +L
Sbjct: 210 FGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTML-ETGVKPNALSLTS 268
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ + ++G+ +H + D SL+ Y+ CGDL A+ +F+ I +KD
Sbjct: 269 VLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKD 328
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
VV WN+MISG+ + G +KA+ L+ EM+ E +KPD +T V VL AC ++ G+
Sbjct: 329 VVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGV 384
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 37/215 (17%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
EYAR++F++IPQPN ++N ++ A + F ++S + + +I A
Sbjct: 90 EYARQLFEKIPQPNTVSYNIML-ACHWHHLGVHDARGF----FDSMPLKDVASWNTMISA 144
Query: 134 AAR-PVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDL---------------------- 170
A+ + + M E + V ++++ Y CGDL
Sbjct: 145 LAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMI 204
Query: 171 ---------AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV 221
+A +F + + +V+WN+MI+G+VE G E + L+R M VKP+ +
Sbjct: 205 TGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNAL 264
Query: 222 TMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
++ VL C+ L+ G V + K + D T
Sbjct: 265 SLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTT 299
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 147 HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG-GFFEKAI 205
H ++++ SN LI Y CGD+ A VF + K V+WNS+++ F + G FE A
Sbjct: 34 HEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYAR 93
Query: 206 ELYREMEVENVKPDEVTMVVVLSAC 230
+L+ ++ +P+ V+ ++L AC
Sbjct: 94 QLFEKIP----QPNTVSYNIML-AC 113
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 15/223 (6%)
Query: 43 HAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
HA +L F D + + L ++ C L E+ ++FD ++ +W +I +
Sbjct: 126 HAHILKFGFDSDLFVRNSLISGYSNCGL-----FEFGSRVFDGTEDKDVVSWTAMIDGFV 180
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED------D 153
+D +++ F+++ S NE T+ V+KA + R G++IHG + + D
Sbjct: 181 RNDSSLEAMTYFVEM-KRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCD 239
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ I +SL+ Y CG A VF + ++VV+W ++I+G+V+G FEK + ++ EM
Sbjct: 240 VFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLK 299
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+V P+E T+ VLSACA L G V ++ KN I+++ T
Sbjct: 300 SDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTT 342
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+K+FD++P N+ TW LI Y + +F +++ S PNE TL V+ A A
Sbjct: 259 AQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEML-KSDVAPNEKTLSSVLSACA 317
Query: 136 RPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ +H E + + +LI FYA CG L A VF + +K+V +W +
Sbjct: 318 HVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTA 377
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
MI+GF G+ A++L+ M +V P+EVT +VVLSACA +E G
Sbjct: 378 MINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEG 426
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 14/226 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSA--SKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
K+IH +L++ F+ S+L C +T YAR++ QI P++ W++L+
Sbjct: 19 KQIHCLVLTSPIFYTRRDLFLSRLLRRCTAAT--QFRYARRLLCQIQTPSIQLWDSLVGH 76
Query: 98 YSS--SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA-----ARPVQFRVGQAIHGMF 150
+S + SF+ + Q+ N P+ T P ++KA A P QF G F
Sbjct: 77 FSGRVTLNRRLSFLSYRQMRRNG-VVPSRHTFPPLLKAVFKLRDANPFQFHAHILKFG-F 134
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ DL + NSLI Y+ CG VF KDVVSW +MI GFV +A+ + E
Sbjct: 135 DSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVE 194
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS-HIEKNGIKMDL 255
M+ V +E+T+V VL A K D+ FG + ++E ++ D+
Sbjct: 195 MKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDV 240
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/212 (19%), Positives = 81/212 (38%), Gaps = 37/212 (17%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+R+H ++ + + L + C LE A +F+++ + N+YTW +I
Sbjct: 326 RRVHCYVIKNSIEINTTVGTTLIDFYAKCG-----CLEEAILVFERLREKNVYTWTAMIN 380
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
+++ I + +F ++ +S PNE T V+ A A G+ + ++ +
Sbjct: 381 GFAAHGYAIGAVDLFHTML-SSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNL 439
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
H+ C+ + G+K G E+A L M +E
Sbjct: 440 EPKADHY----------ACMVDLFGRK---------------GLLEEAKALIERMPME-- 472
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
P + +C +D E G + +S + K
Sbjct: 473 -PTNAVWGALFGSCLIHKDYELGKYAASRVIK 503
>gi|242040141|ref|XP_002467465.1| hypothetical protein SORBIDRAFT_01g028590 [Sorghum bicolor]
gi|241921319|gb|EER94463.1| hypothetical protein SORBIDRAFT_01g028590 [Sorghum bicolor]
Length = 529
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 8/183 (4%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
CA + L AR++FDQ+P+ N ++WN LI Y +P+ + +F L+ P++
Sbjct: 267 CACAEDGQLTIARQLFDQMPERNAFSWNALIEGYVCHGQPMDALSMFQHLMEEG-LQPDQ 325
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
TL + A A ++GQ IHGM F+ ++I +S+I Y+ C L+ A VF +
Sbjct: 326 ITLGCCLSACAAMRSLKLGQQIHGMLLRCGFDQSVMIISSIIDMYSECSFLSGAIEVFSL 385
Query: 180 IGK--KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
G+ K+ V WN M+S G + AI L+ +M E KPD T +VL+AC +E
Sbjct: 386 TGRERKNAVLWNGMLSALCRHGHGQDAIGLFVQMIHERQKPDANTFFLVLTACCHCGLVE 445
Query: 238 FGI 240
G+
Sbjct: 446 EGM 448
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 51/257 (19%)
Query: 45 QMLSTDFFFD-PYSASKLFTP----------CALSTFSSLEYA---RKMFDQIPQPNLYT 90
++LS +F P A +LFT L+ ++ L A ++F +P L +
Sbjct: 99 RLLSLNFLLGRPRDARRLFTKMPRPSVHSYNAMLTGYARLALAGPASEVFASMPHRELVS 158
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIKAAARPVQFRVGQAIHGM 149
+N ++ A E + ++ +L P + T ++ A A + + + HG
Sbjct: 159 YNAVMLALGRGGEARGAVELYSELRNMYPSLGYSHHTFLALLAAGAELMDRELARQFHGH 218
Query: 150 -----FEDDLVISNSLIHFYAVC-------------------------------GDLAMA 173
F D+ I++SL+ Y C G L +A
Sbjct: 219 LMVLGFLSDVNIASSLLDVYRKCHCVDDARNLFDEMHIKDVHMWTTVVCACAEDGQLTIA 278
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+F + +++ SWN++I G+V G A+ +++ + E ++PD++T+ LSACA
Sbjct: 279 RQLFDQMPERNAFSWNALIEGYVCHGQPMDALSMFQHLMEEGLQPDQITLGCCLSACAAM 338
Query: 234 RDLEFGIWVSSHIEKNG 250
R L+ G + + + G
Sbjct: 339 RSLKLGQQIHGMLLRCG 355
>gi|357154306|ref|XP_003576739.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Brachypodium distachyon]
Length = 620
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 6/186 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A +F P N +W +I ++ + ++ +F++++ P+ FT V+
Sbjct: 282 IEQAAVLFRIAPATNAISWTAMIGGFARNGSADEALALFVKMLTQDDIHPDSFTFGAVLH 341
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G+ IHG + L ++NSL+ YA CGD+ A VF + KKD+VS
Sbjct: 342 ACATASSLASGRMIHGCAFRTGYASYLYVANSLMDMYAKCGDVEGATNVFHAVLKKDLVS 401
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG-IWVSSHI 246
WN+M+ GF G+ ++A+E+YR M + PDEVT +L+AC+ LE G + S +
Sbjct: 402 WNTMLFGFAINGWAKEALEVYRRMLSHDACPDEVTFAGLLTACSHSGLLEQGRTFFESMV 461
Query: 247 EKNGIK 252
+G+K
Sbjct: 462 SVHGLK 467
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 18/184 (9%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ A+++FD++P N WNTL+ YS S Q ++F ++ S ++ TL ++
Sbjct: 170 MKVAQELFDEMPIGNNVAWNTLLMGYSRSGNAKQCLLVFNKMRM-SGLCCDDATLCILVD 228
Query: 133 AAAR----PVQFRVGQ--------AIHGMFED----DLVISNSLIHFYAVCGDLAMAYCV 176
A A P F + + AI +FE +V NSLI Y G + A +
Sbjct: 229 ACAELPYPPTGFAIHKIVVQSGWNAIPEIFESMESRTIVSWNSLIDAYMRLGHIEQAAVL 288
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRD 235
F + + +SW +MI GF G ++A+ L+ +M + ++ PD T VL ACA
Sbjct: 289 FRIAPATNAISWTAMIGGFARNGSADEALALFVKMLTQDDIHPDSFTFGAVLHACATASS 348
Query: 236 LEFG 239
L G
Sbjct: 349 LASG 352
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 86/190 (45%), Gaps = 41/190 (21%)
Query: 79 MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA---- 134
+FD +P + WN ++ AY+ + +P + +F++ + P+ F+L + AA
Sbjct: 48 VFDAMPCRDAVAWNAMLTAYARAGQPRAALGLFVR-----AHAPDAFSLTAALSAAADLR 102
Query: 135 ---------ARPVQFR------VGQAIHGMF-----------------EDDLVISNSLIH 162
AR ++ VG A+ M+ E + + SL+H
Sbjct: 103 SPDAGAQLHARLLRLGLRAPLPVGNALVAMYARCARADDAARAFREMPERNALSWCSLLH 162
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
Y G + +A +F + + V+WN+++ G+ G ++ + ++ +M + + D+ T
Sbjct: 163 AYVASGQMKVAQELFDEMPIGNNVAWNTLLMGYSRSGNAKQCLLVFNKMRMSGLCCDDAT 222
Query: 223 MVVVLSACAK 232
+ +++ ACA+
Sbjct: 223 LCILVDACAE 232
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 14/201 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K L+ +H++++S D ++ KL A ++ + ARK+FD+IP+ N+ N +IR
Sbjct: 57 KTLRTVHSRIISEDLRYNSSLGVKLMR--AYASLKDVATARKVFDEIPERNVIIINVMIR 114
Query: 97 AYSSSD---EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+Y ++ E IQ F P+ +T P V+KA + +G+ IHG
Sbjct: 115 SYVNNGFYREGIQVFGTMCSCHVK----PDHYTFPCVLKACSCSGNIVIGKKIHGSATKV 170
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
L + N L+ Y CG L+ A V + ++DVVSWNS+++G+ + F+ A+E+
Sbjct: 171 GLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVC 230
Query: 209 REMEVENVKPDEVTMVVVLSA 229
REME + D TM +L A
Sbjct: 231 REMESVKISHDAGTMASLLPA 251
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 6/200 (3%)
Query: 45 QMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEP 104
+M S D + + L + +T ++ Y + MF ++ + +L +WN +I Y + P
Sbjct: 232 EMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMP 291
Query: 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNS 159
+++ ++ + + + P+ ++ V+ A +G+ IHG E +L++ N+
Sbjct: 292 VEAVELYSGMEADG-FEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 350
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
LI YA CG L A VF + +DVVSW +MIS + G A+ L+ +M+ + PD
Sbjct: 351 LIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPD 410
Query: 220 EVTMVVVLSACAKKRDLEFG 239
+ V L+AC+ LE G
Sbjct: 411 SIAFVTTLAACSHAGLLEEG 430
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
L+ YA D+A A VF I +++V+ N MI +V GF+ + I+++ M +VKPD
Sbjct: 81 LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
T VL AC+ ++ G + K G+ L
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTL 176
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 14/227 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KR+H + D FD + ++ L + C S++ A +F ++ ++ +WNT+I
Sbjct: 417 KRVHEWIKENDLGFDIFVSNALMDMYAKCG-----SMQEAELVFSEMRVKDIISWNTIIG 471
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
YS + ++ +F L+ + P+E T+ V+ A A F G+ IHG +
Sbjct: 472 GYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 531
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D ++NSL+ YA CG L +A+ +F I KD+VSW MI+G+ GF ++AI L+ +M
Sbjct: 532 SDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQM 591
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
++ DE++ V +L AC+ ++ G W +I ++ K++ T E
Sbjct: 592 RQAGIEADEISFVSLLYACSHSGLVDEG-WRFFNIMRHECKIEPTVE 637
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ ARK+FD++ + ++ +WN++I Y S+ + +F+Q++ S + T+ V
Sbjct: 246 VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLV-SGIEIDLATIVSVFA 304
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A +G+A+H + F + N+L+ Y+ CGDL A VF + + VVS
Sbjct: 305 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 364
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+ SMI+G+ G +A++L+ EME E + PD T+ VL+ CA+ R L+ G V I+
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 424
Query: 248 KNGIKMDL 255
+N + D+
Sbjct: 425 ENDLGFDI 432
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 14/216 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K K + + F D SKL +T C L+ A ++FD++ WN
Sbjct: 111 KDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCG-----DLKEASRVFDEVKIEKALFWNI 165
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
L+ + S + S +F +++ +S + +T V K+ + G+ +HG
Sbjct: 166 LMNELAKSGDFSGSIGLFKKMM-SSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKS 224
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F + + NSL+ FY + A VF + ++DV+SWNS+I+G+V G EK + ++
Sbjct: 225 GFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVF 284
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+M V ++ D T+V V + CA R + G V S
Sbjct: 285 VQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS 320
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 12/195 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+F +L T S + FD+ ++ NT +R + S + + L + +
Sbjct: 38 IFNRASLRTVSDCVDSITTFDR----SVTDANTQLRRFCESGNLENAVKL---LCVSGKW 90
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYC 175
+ TL V++ A + G+ + D + + L Y CGDL A
Sbjct: 91 DIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASR 150
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + + + WN +++ + G F +I L+++M V+ D T V + + R
Sbjct: 151 VFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 210
Query: 236 LEFGIWVSSHIEKNG 250
+ G + I K+G
Sbjct: 211 VHGGEQLHGFILKSG 225
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 16/226 (7%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY---ARKMFDQIPQ--PNLYTWNTLIRA 97
HA L D + + L ++ +SS Y AR + D P+ ++ +WNT+I
Sbjct: 28 HALSLKLSLASDSFVLNAL-----INMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAG 82
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y P ++ F Q+ +E TL V+ A AR +VG H + FE
Sbjct: 83 YIRGGMPNKALQSFHQMAKEQVRL-DEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEI 141
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ I +SL+ YA CG + A VF + +++VV W SMI+G + G F++A++L+R+M+
Sbjct: 142 NCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQ 201
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ VK D+ T+ V+S+C + L+ G ++ ++ + +G+ +L+ +
Sbjct: 202 IAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVK 247
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 15/206 (7%)
Query: 43 HAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
HA ++ F + Y S L + C + +E AR++F+++P+ N+ W ++I +
Sbjct: 131 HALVVLNGFEINCYIGSSLVSMYAKCGM-----VEEARRVFNRMPERNVVCWTSMIAGCT 185
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
S ++ +F + + ++ T+ V+ + + +G+ +H + +L
Sbjct: 186 QSGRFKEAVDLFRDMQI-AGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKEL 244
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ NSLI Y+ CGD+ AY +F + K+DV +W MI GF G +A++L+ +ME E
Sbjct: 245 SVKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGE 304
Query: 215 N-VKPDEVTMVVVLSACAKKRDLEFG 239
+ V P+EV + VL+AC+ +E G
Sbjct: 305 DKVMPNEVIFLGVLTACSHGGLVEQG 330
>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
Length = 611
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
Query: 68 STFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
S LE ARK+FD I + WN +I AY+ Q+ ++ + + P + T
Sbjct: 182 SKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGT 241
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
VI A + G+AIH F+ +L++SN+L+H Y CG L A VF +
Sbjct: 242 FVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMK 301
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
KD +SWN++IS + G ++A+ LY+EM+++ VKP EVT V +LSAC+
Sbjct: 302 LKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACS 351
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 10/193 (5%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVI 131
L+ AR F+++ N TWN ++ Y ++ +F ++ S P++F+ I
Sbjct: 82 LDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDKFSFSIAI 141
Query: 132 KAAARPVQFRVGQAIHGMFE-------DDLVISNSLIHFYAVCGDLAMAYCVFVMIG-KK 183
+A + G+ IH M D+V+ +L++ Y+ CGDL A VF I
Sbjct: 142 EACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDA 201
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
D V WN+MI+ + + G ++A++LYR M + ++ P + T V V+ CA+ L+ G +
Sbjct: 202 DSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAI 261
Query: 243 SSHIEKNGIKMDL 255
+ + +L
Sbjct: 262 HARVRATNFDANL 274
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 109 MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV--GQAIH------GMFEDDLVISNSL 160
++F + +Y S P+ T ++ A A+ + G+ IH G+ + +V+ ++
Sbjct: 14 LVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPN-VVVGTAV 72
Query: 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM--EVENVKP 218
I Y CG L A F + K+ V+WN+M++ + G +A+EL+REM + +P
Sbjct: 73 ISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARP 132
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
D+ + + + AC+ DLE G + + + G ++
Sbjct: 133 DKFSFSIAIEACSNLEDLEQGREIHEMLRREGKEL 167
>gi|326490838|dbj|BAJ90086.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 470
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 7/184 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L AR++FD+ P+ ++ WNTL+ A + S +P + + +V PN ++ ++
Sbjct: 56 LASARQLFDETPRRDIPLWNTLVSACARSRQPQHALLAVSSMVGEGSR-PNNLSVTSLLS 114
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A+ G+ +HG DL + N+L+ Y CG + A VF +G K VVS
Sbjct: 115 ACAQLGSLVHGRELHGYAVRNVPVLDLRVLNALVSMYGRCGRFSKASAVFAGMGNKSVVS 174
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK-KRDLEFGIWVSSHI 246
W MI+ E G +A+ ++ EM + VK DEVT++ V+SAC K E G WV +
Sbjct: 175 WTCMINACCENGRPAEALAVFNEMRLAVVKVDEVTLLAVISACTKLDCASELGEWVEEYA 234
Query: 247 EKNG 250
+NG
Sbjct: 235 SENG 238
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 7/170 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F + ++ +W +I A + P ++ +F ++ + +E TL VI A
Sbjct: 160 ASAVFAGMGNKSVVSWTCMINACCENGRPAEALAVFNEMRL-AVVKVDEVTLLAVISACT 218
Query: 136 R-PVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ +G+ A F + ++NS IH + G + + +F + + VVSW
Sbjct: 219 KLDCASELGEWVEEYASENGFLEKTRVANSFIHMHGKMGRVKKSCQIFDSMSARTVVSWT 278
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+MI G A+ + +M + PDEV + +++AC R + G
Sbjct: 279 AMIQALAVHGHGVAALVRFSQMLRQGFWPDEVIFLSMINACCHSRLVSEG 328
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%)
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
G L + +S + YA G LA A +F ++D+ WN+++S + A+
Sbjct: 34 GFLPSCLHLCSSFLKSYAASGRLASARQLFDETPRRDIPLWNTLVSACARSRQPQHALLA 93
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M E +P+ +++ +LSACA+ L G + + +N +DL
Sbjct: 94 VSSMVGEGSRPNNLSVTSLLSACAQLGSLVHGRELHGYAVRNVPVLDL 141
>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
Length = 653
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 13/239 (5%)
Query: 8 VISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLK-RIHAQMLSTDFFFDPYSASKLFTPCA 66
+ ++ P+ T + G P L + + L RI A+ DF S ++T C
Sbjct: 170 MCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLIS-MYTRCG 228
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
SLE AR+ F I + L WNT++ AY+ D+ + ++ ++ + P+ FT
Sbjct: 229 -----SLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEG-FTPDRFT 282
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
V+ + A R G+ IH FE D+++ +L++ YA CG LA A F I
Sbjct: 283 FSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGIS 342
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
KDVVSW++MI+ + G E+A+EL M ++ + +EVT VL AC+ L GI
Sbjct: 343 NKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGI 401
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 36/218 (16%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD+I Q N ++W+ L+ Y + ++ ++ ++V + +TL V+ A
Sbjct: 1 ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISI-DAYTLSSVLAACT 59
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF------------- 177
+ + G+ + FE D+V++ SLIH +A CG L A VF
Sbjct: 60 KLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVT 119
Query: 178 VMIGK-----------------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220
MIG KDVVSWN+MI+ + G + A L+ M PD
Sbjct: 120 AMIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDI 179
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
T +L ACA + LE G + I G D +
Sbjct: 180 YTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQ 217
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 6/190 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SL+ ++ +F + ++ +WN +I AY+ +F +F ++ + P+ +T +
Sbjct: 127 GSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMC-TLGHTPDIYTFSSI 185
Query: 131 IKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A P + G+ +H F+ D + N+LI Y CG L A F I KK++
Sbjct: 186 LGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKEL 245
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+WN+M++ + + + A+ LY+ M +E PD T V+ +CA L G ++
Sbjct: 246 GAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHEC 305
Query: 246 IEKNGIKMDL 255
G + D+
Sbjct: 306 STSCGFEKDV 315
>gi|361066941|gb|AEW07782.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
Length = 142
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 89/139 (64%), Gaps = 5/139 (3%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ FT PFVIKA A + G+AIH F+ D+ ++NSL+ Y+ CG + +A V
Sbjct: 2 PDNFTFPFVIKACAGLSALQEGKAIHDHIVRTGFQWDVFVANSLVTLYSQCGSVDVARHV 61
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + ++D+VSWN+MI G+ + + ++A+ L+R+M++ VKPD VT+V VLSAC K L
Sbjct: 62 FDKMPERDLVSWNAMIDGYAQNDYGDQALMLFRQMQIAGVKPDPVTIVNVLSACIKIAGL 121
Query: 237 EFGIWVSSHIEKNGIKMDL 255
+W+ S I ++G + D+
Sbjct: 122 CERMWIHSCIIRSGFEADV 140
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+ ++ K IH ++ T F +D + A+ L T S S++ AR +FD++P+ +L +WN
Sbjct: 17 LSALQEGKAIHDHIVRTGFQWDVFVANSLVT--LYSQCGSVDVARHVFDKMPERDLVSWN 74
Query: 93 TLIRAYSSSDEPIQSFMIFLQL 114
+I Y+ +D Q+ M+F Q+
Sbjct: 75 AMIDGYAQNDYGDQALMLFRQM 96
>gi|357130868|ref|XP_003567066.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Brachypodium distachyon]
Length = 433
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 122/254 (48%), Gaps = 15/254 (5%)
Query: 14 HPNPTT--LTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS 71
HP+ T L + Q P + ++Q HA P++ S L + S
Sbjct: 81 HPDRYTFPLALKAAAQGEPPISSLRRQF---HAAAAKRGLARHPFTESALIS--CYSKAG 135
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
L+ AR++FD+ P L +WN +I S + E + +F+++ P++ T+ ++
Sbjct: 136 DLDAARRVFDENPHRGLGSWNAIISGLSQAGESKEPLALFVKM-RRCGVVPDDLTMVSLV 194
Query: 132 KAAARPVQFRVGQAIHGMFED-------DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+ + + +H D+ +SN+LI YA CG +A VF + +D
Sbjct: 195 SSCCAVGDIGLVEQLHKCMLQCKHSSRLDVTLSNALIDMYAKCGRTDLAGRVFERMPLRD 254
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
V SW +MI+G G ++A++ + EM+ E V P+ VTM+ VLSACA + ++ G+ +
Sbjct: 255 VSSWTTMITGLATHGEEQRALKKFDEMKSEGVPPNRVTMLAVLSACAHRGLVDTGMGLLK 314
Query: 245 HIEKNGIKMDLTFE 258
+E IK+ T E
Sbjct: 315 QMEDGEIKVAPTVE 328
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 29/169 (17%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S+ S+L A MF P+ YT+ ++A + + PI S
Sbjct: 64 SSRSALCVAAHMFRCAAHPDRYTFPLALKAAAQGEPPISSLR------------------ 105
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
QF A G+ S +LI Y+ GDL A VF + + S
Sbjct: 106 ----------RQFHAAAAKRGLARHPFTES-ALISCYSKAGDLDAARRVFDENPHRGLGS 154
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
WN++ISG + G ++ + L+ +M V PD++TMV ++S+C D+
Sbjct: 155 WNAIISGLSQAGESKEPLALFVKMRRCGVVPDDLTMVSLVSSCCAVGDI 203
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 120/237 (50%), Gaps = 23/237 (9%)
Query: 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYSA--SKLFTPC---ALSTFSSLEYARKMFDQIP 84
PH T+ + L ++HA + + A ++L T C + L YAR++FD+IP
Sbjct: 36 PH-CTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIP 94
Query: 85 QPNLYTW-NTLIRAYS-------SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
P W NTL+R Y+ ++E + F+ ++ P+ +T ++KA A
Sbjct: 95 HPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMME----EGVAPDTYTFVSLLKACAS 150
Query: 137 PVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
G+ HG+ + ++ +LI+ YA CGD+ A +F + + VVS+N+M
Sbjct: 151 ARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAM 210
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
I+ V +A+ L+REM+ + +KP VT++ VLSACA LE G W+ +I K
Sbjct: 211 ITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRK 267
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 6/181 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR MFD++ + ++N +I A S P ++ ++F ++ P TL V+ A A
Sbjct: 192 ARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKG-LKPTSVTLISVLSACA 250
Query: 136 RPVQFRVGQAIHG----MFEDDLV-ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ IH M D LV ++ +LI YA CG L A VF + +D +W+
Sbjct: 251 LLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSV 310
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
M+ + G+ +AI ++ EM+ + +KPD+VT + VL AC+ + G+ + + G
Sbjct: 311 MMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYG 370
Query: 251 I 251
I
Sbjct: 371 I 371
>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 824
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 108/209 (51%), Gaps = 8/209 (3%)
Query: 54 DPYSASKLFTPCALSTFS---SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMI 110
D Y A+S ++ LE +R++FD + N+ WNT+I Y +D ++S +
Sbjct: 249 DEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIEL 308
Query: 111 FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYA 165
FL+ + + +E T A + Q +G+ HG + +VI NSL+ Y+
Sbjct: 309 FLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYS 368
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
CG + ++ VF + ++DVVSWN+MIS FV+ G ++ + L EM+ + K D +T+
Sbjct: 369 RCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTA 428
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+LSA + R+ E G + + GI+ +
Sbjct: 429 LLSAASNLRNKEIGKQTHGFLIRQGIQFE 457
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 105/212 (49%), Gaps = 21/212 (9%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
G Q H + Q + +++ + D Y+ S L + F YA + DQ
Sbjct: 442 GKQTHGFLIRQGIQFEGMNS------YLIDMYAKSGLIR-ISQKLFEGSGYAER--DQA- 491
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
TWN++I Y+ + ++F++F +++ + PN T+ ++ A ++ +G+
Sbjct: 492 -----TWNSMISGYTQNGHTEETFLVFRKMLEQNIR-PNAVTVASILPACSQVGSVDLGK 545
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+HG + ++ ++++L+ Y+ G + A +F +++ V++ +MI G+ + G
Sbjct: 546 QLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHG 605
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
E+AI L+ M+ +KPD + V VLSAC+
Sbjct: 606 MGERAISLFLSMQELGIKPDAIAFVAVLSACS 637
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIK 132
+ AR++FD IP+P WNT+I + ++ P ++ + + ++ +P+ + +T +K
Sbjct: 56 QLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTYSSTLK 115
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCG----------DLAMAYCVF 177
A A + G+A+H + V+ NSL++ Y C + + VF
Sbjct: 116 ACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVVRKVF 175
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ +K+VV+WN++IS +V+ G +A + M +KP V+ V V A A R ++
Sbjct: 176 DNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIK 235
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 88/167 (52%), Gaps = 7/167 (4%)
Query: 79 MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138
+F + + ++ +WNT+I A+ + + M+ ++ + + T+ ++ AA+
Sbjct: 379 VFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEM-QKQGFKIDYITVTALLSAASNLR 437
Query: 139 QFRVGQAIHGMFEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIG--KKDVVSWNSMI 192
+G+ HG + +++ LI YA G + ++ +F G ++D +WNSMI
Sbjct: 438 NKEIGKQTHGFLIRQGIQFEGMNSYLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMI 497
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
SG+ + G E+ ++R+M +N++P+ VT+ +L AC++ ++ G
Sbjct: 498 SGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLG 544
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN--VKPDEVTMVV 225
G+ +A +F I K V WN++I GF+ +A+ Y M+ K D T
Sbjct: 53 GNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTYSS 112
Query: 226 VLSACAKKRDLEFGIWVSSHI 246
L ACA+ ++L+ G V H+
Sbjct: 113 TLKACAETKNLKAGKAVHCHL 133
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 14/227 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KR+H + D FD + ++ L + C S++ A +F ++ ++ +WNT+I
Sbjct: 266 KRVHEWIKENDLGFDIFVSNALMDMYAKCG-----SMQEAELVFSEMRVKDIISWNTIIG 320
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
YS + ++ +F L+ + P+E T+ V+ A A F G+ IHG +
Sbjct: 321 GYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 380
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D ++NSL+ YA CG L +A+ +F I KD+VSW MI+G+ GF ++AI L+ +M
Sbjct: 381 SDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQM 440
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
++ DE++ V +L AC+ ++ G W +I ++ K++ T E
Sbjct: 441 RQAGIEADEISFVSLLYACSHSGLVDEG-WRFFNIMRHECKIEPTVE 486
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ ARK+FD++ + ++ +WN++I Y S+ + +F+Q++ S + T+ V
Sbjct: 95 VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLV-SGIEIDLATIVSVFA 153
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A +G+A+H + F + N+L+ Y+ CGDL A VF + + VVS
Sbjct: 154 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 213
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+ SMI+G+ G +A++L+ EME E + PD T+ VL+ CA+ R L+ G V I+
Sbjct: 214 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 273
Query: 248 KNGIKMDL 255
+N + D+
Sbjct: 274 ENDLGFDI 281
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 80 FDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139
FD++ WN L+ + S + S +F +++ +S + +T V K+ +
Sbjct: 1 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMM-SSGVEMDSYTFSCVSKSFSSLRS 59
Query: 140 FRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
G+ +HG F + + NSL+ FY + A VF + ++DV+SWNS+I+G
Sbjct: 60 VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+V G EK + ++ +M V ++ D T+V V + CA R + G V S
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS 169
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 122/233 (52%), Gaps = 15/233 (6%)
Query: 32 FLTNQKQLKRIHAQMLSTDFF---FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP-N 87
L +++ +H + + F S ++T C + L AR++FD++P+ +
Sbjct: 228 LLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKC-----NDLNGARQLFDRMPEKED 282
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
+ +WN++I AYSS+ + I++ +F ++ + PN +T ++A + G IH
Sbjct: 283 VVSWNSMISAYSSNGQSIEALRLFGEM-QKASLAPNTYTFVAALQACEDSSFIKQGMFIH 341
Query: 148 GM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
+ ++ ++N+LI YA G + A +F + D +SWNSM+SGFV+ G +
Sbjct: 342 ATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYH 401
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+A++ Y EM KPD V ++ +++A A+ + G+ + ++ KNG+ DL
Sbjct: 402 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDL 454
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 126/248 (50%), Gaps = 21/248 (8%)
Query: 16 NPTTLTVNNGHQRHPHFLTNQKQL---KRIHAQMLSTDFFFDPYSASK----LFTPCALS 68
+P+ +++ + ++K L +++HA M++++ F+ S ++ C
Sbjct: 107 SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCG-- 164
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL-VYNSPYFPNEFTL 127
L A K+FD +P ++TWN +I AY ++ EP+ S ++ ++ V P + T
Sbjct: 165 ---CLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPL--DACTF 219
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF-VMIG 181
P ++KA R G +HG+ + + ++NS++ Y C DL A +F M
Sbjct: 220 PCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPE 279
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
K+DVVSWNSMIS + G +A+ L+ EM+ ++ P+ T V L AC ++ G++
Sbjct: 280 KEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMF 339
Query: 242 VSSHIEKN 249
+ + + K+
Sbjct: 340 IHATVLKS 347
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 6/166 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+++YA +MF+ I ++ +W ++I Y + ++ +F L+ + P+ +L +
Sbjct: 568 GNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELF-HLMKETGVEPDSISLVSI 626
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ AAA + G+ IHG F + ++++L+ YA CG L + VF I KD+
Sbjct: 627 LSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDL 686
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
V W SMI+ + G AI+L+R ME E++ PD + V VL AC+
Sbjct: 687 VLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 732
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 111/230 (48%), Gaps = 15/230 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQ IHA +L + ++ + + A+ L A F + A +F + + +WN+++
Sbjct: 335 KQGMFIHATVLKSSYYINVFVANALIAMYA--RFGKMGEAANIFYNMDDWDTISWNSMLS 392
Query: 97 AYSSSD---EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+ + E +Q F + ++ P+ + +I A+AR G IH
Sbjct: 393 GFVQNGLYHEALQ----FYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKN 448
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ DL + NSL+ YA + C+F + KDVVSW ++I+G + G +A+EL+
Sbjct: 449 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 508
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
RE+++E + D + + +L AC+ + + + S+I + G+ DL +
Sbjct: 509 REVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQ 557
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F S++Y +FD++P ++ +W T+I ++ + ++ +F ++
Sbjct: 465 AKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMIS 524
Query: 128 PFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
++ + + V + IH DLV+ N ++ Y CG++ A +F +I K
Sbjct: 525 SILLACSGLKLISSV-KEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFK 583
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
DVVSW SMIS +V G +A+EL+ M+ V+PD +++V +
Sbjct: 584 DVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSI 626
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 122 PNEFTL----PFVIKAAARPVQFRVGQAIHG------MFEDDLVISNSLIHFYAVCGDLA 171
P++F+L V++ GQ +H + + +S L+ Y CG L
Sbjct: 108 PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 167
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A +F + K + +WN+MI +V G ++ELYREM V + D T +L AC
Sbjct: 168 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 227
Query: 232 KKRDLEFGIWVSSHIEKNG 250
+D G V K G
Sbjct: 228 LLKDRRCGAEVHGLAIKEG 246
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SS++ AR MF + + N+ +WN LI Y+ + E ++ +FL L+ +P +T +
Sbjct: 333 SSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFL-LLKRESIWPTHYTFGNL 391
Query: 131 IKAAARPVQFRVGQAIHGMF-----------EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
+ A A ++G+ H + D+ + NSLI Y CG + VF
Sbjct: 392 LNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFER 451
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++D VSWN+MI G+ + G+ +A+E++REM V +PD VTM+ VLSAC+ +E G
Sbjct: 452 MLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEG 511
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 102/189 (53%), Gaps = 6/189 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
AL+ F +L+ A +F +P+ + +WN ++ ++ D + + F+ +++ + NE+
Sbjct: 94 ALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDR-FEEALRFVVDMHSEDFVLNEY 152
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+ + A A + +G IHG+ + D+ + ++L+ Y+ C +A A F +
Sbjct: 153 SFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDM 212
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+++VSWNS+I+ + + G KA+E++ M ++PDE+T+ V SACA + G+
Sbjct: 213 DVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGL 272
Query: 241 WVSSHIEKN 249
+ + + K+
Sbjct: 273 QIHARVMKH 281
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 112/250 (44%), Gaps = 46/250 (18%)
Query: 41 RIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+IH + + + D Y S L ++ C + + A++ FD + N+ +WN+LI
Sbjct: 172 QIHGLIAKSRYSLDVYMGSALVDMYSKCRV-----VASAQRAFDDMDVRNIVSWNSLITC 226
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FE 151
Y + ++ +F++++ N P+E TL V A A R G IH +
Sbjct: 227 YEQNGPAGKALEVFVRMM-NCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYR 285
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV--------------- 196
+DLV+ N+L+ YA C + A VF + +DVVS SM+SG+
Sbjct: 286 NDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNM 345
Query: 197 ----------------EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ G E+A+ L+ ++ E++ P T +L+ACA DL+ G
Sbjct: 346 MERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGR 405
Query: 241 WVSSHIEKNG 250
+HI K+G
Sbjct: 406 QAHTHILKHG 415
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 34/152 (22%)
Query: 135 ARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVF------------VMIG- 181
AR V R+ I F ++ I N L+ Y CG L A VF ++G
Sbjct: 38 ARLVHARI---IKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGA 94
Query: 182 ------------------KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
++D SWN+M+SGF + FE+A+ +M E+ +E +
Sbjct: 95 LTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSF 154
Query: 224 VVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
LSACA DL G+ + I K+ +D+
Sbjct: 155 GSALSACAGLMDLSIGVQIHGLIAKSRYSLDV 186
>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
Length = 673
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 111/218 (50%), Gaps = 18/218 (8%)
Query: 32 FLTNQKQLKRIHAQM----LSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN 87
L Q + IH + LST+ F S ++ C +E AR++FD++ +
Sbjct: 235 MLGGLHQGRWIHGSVIKYGLSTNSFISA-SLLDMYAKC-----EKVEDARRVFDELEFVD 288
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
+ W +I Y+ + P+ + +FL + S PN T+ VI A+A+ +G+++H
Sbjct: 289 IVLWTAMIVGYTQNKRPLDALQLFLHKKFVS-IVPNSVTIATVISASAQLRHLPLGRSVH 347
Query: 148 ------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
G E D V+ N+L+ YA C L A +F I KDVV+WNSM++G+ E G
Sbjct: 348 AIGVKLGTMESD-VVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMA 406
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+++ L+ M ++ + PD +++V LSAC DL G
Sbjct: 407 NESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIG 444
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 5/192 (2%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN-EFT 126
+ L AR + D P+P+ Y + ++ + + + + P +
Sbjct: 66 AALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAAQADVV 125
Query: 127 LPFVIKAAARPVQFRVGQAIH----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
L +KA R FR G+ +H D + NSL+ YA GDL A VF + +
Sbjct: 126 LSLALKACVRSADFRYGRRLHCDVVKAGGADGFVMNSLVDMYAKAGDLENARKVFDRVPE 185
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
++VVSW SM+SG ++ G E+ + L+ EM +NV P E TMV VL+ACA L G W+
Sbjct: 186 RNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWI 245
Query: 243 SSHIEKNGIKMD 254
+ K G+ +
Sbjct: 246 HGSVIKYGLSTN 257
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE ARK+FD++P+ N+ +W +++ + + ++F ++ ++ + P+E+T+ V+
Sbjct: 173 LENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVH-PSEYTMVSVLA 231
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G+ IHG + IS SL+ YA C + A VF + D+V
Sbjct: 232 ACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVL 291
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
W +MI G+ + A++L+ + ++ P+ VT+ V+SA A+ R L G
Sbjct: 292 WTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLG 343
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
+L A +F +I ++ WN+++ YS + +S ++F ++ P+ ++ +
Sbjct: 374 ALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQG-ISPDAISVVNAL 432
Query: 132 KAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A +G+ H F ++ ++ +L++ Y+ C DL A VF + ++ V
Sbjct: 433 SACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSV 492
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+W++MI G+ G +I+L+ EM EN+ P+EV +LSAC+
Sbjct: 493 TWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACS 537
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE--NVK 217
L+ YA GDLA A V + D ++ M+ V+ G A+ L+R+M
Sbjct: 61 LLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAA 120
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+V + + L AC + D +G + + K G
Sbjct: 121 QADVVLSLALKACVRSADFRYGRRLHCDVVKAG 153
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 8/225 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP-QPNLYTWNTLI 95
K K H ++L + D S + ++ ++ +Y +F + P N + +NT+I
Sbjct: 18 KHAKLAHCRLLRLNLHHDNDLLSIILRS-TINFSNNAQYPILVFHKTPTNSNTFLYNTMI 76
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
R S D + ++ + + + P+ FT FV+KA AR F +G IH + F
Sbjct: 77 RGMVSKDRFNNAVHLYASM-HKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGF 135
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ D+ + +++ FY+ CG L A+ VF + K+VVSW MI G +E G F +A++L+R
Sbjct: 136 DCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRG 195
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ ++PD +V VL ACA+ DLE G W+ + + G+ ++
Sbjct: 196 LLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNV 240
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 98/211 (46%), Gaps = 14/211 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA---Y 98
IH+ + T F D + + + C S L A K+FD + N+ +W +I +
Sbjct: 126 IHSLVFKTGFDCDVFVKTNVV--CFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEF 183
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----D 153
E + F L+ S P+ F + V++A AR G+ I + +
Sbjct: 184 GKFREAVDLFRGLLE----SGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRN 239
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ ++ SL+ Y CG + A VF + +KD+V W++MI G+ G +AIEL+ EM
Sbjct: 240 VFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRK 299
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
NV+PD MV LS+CA LE G W
Sbjct: 300 VNVRPDCYAMVGALSSCASLGALELGNWAKG 330
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 11/183 (6%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F S ++T C S+E AR +FD + + ++ W+ +I+ Y+S+ P ++ +F
Sbjct: 241 FVATSLVDMYTKCG-----SMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFF 295
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVC 167
++ P+ + + + + A +G G+ F + V+ SLI FYA C
Sbjct: 296 EM-RKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKC 354
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G + A V+ M+ +KD V +N++ISG G A ++ +M + P+E T V +L
Sbjct: 355 GSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLL 414
Query: 228 SAC 230
C
Sbjct: 415 CGC 417
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 33/243 (13%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
++ +R+HA M+ T + + ++L +T C SL A +FD++P+ N+ +W
Sbjct: 260 REGQRVHAHMIKTRYLPSVFLRTRLIVLYTKC-----DSLGDAHNVFDEMPERNVVSWTA 314
Query: 94 LIRAYSSSDEPIQSFMIF-------LQLVY----------NSPYF---PNEFTLPFVIKA 133
+I AYS Q+ +F L VY N P+ PNEFT V+ +
Sbjct: 315 MISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTS 374
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ F +G+ IH + +ED + + +SL+ YA G + A VF + ++DVVS
Sbjct: 375 CTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSC 434
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
++ISG+ + G E+A+EL+R ++ E +K + VT VL+A + L+ G V +H+ +
Sbjct: 435 TAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLR 494
Query: 249 NGI 251
+ I
Sbjct: 495 SEI 497
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 97/198 (48%), Gaps = 9/198 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH+ ++ ++ + S L A + AR +F+ +P+ ++ + +I Y+
Sbjct: 385 RQIHSLIIKLNYEDHVFVGSSLLDMYAKD--GKIHEARTVFECLPERDVVSCTAIISGYA 442
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----L 154
++ +F +L N T V+ A + +G+ +H +
Sbjct: 443 QLGLDEEALELFRRL-QGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFV 501
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ NSLI Y+ CG+L + +F + ++ V+SWN+M+ G+ + G + ++L+ M E
Sbjct: 502 VLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREE 561
Query: 215 -NVKPDEVTMVVVLSACA 231
VKPD VT++ VLS C+
Sbjct: 562 TKVKPDSVTILAVLSGCS 579
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 26/135 (19%)
Query: 140 FRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
FR GQ +H + + + LI Y C L A+ VF + +++VVSW +MIS
Sbjct: 259 FREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISA 318
Query: 195 FVEGGFFEKAIELY--------------REMEVEN-------VKPDEVTMVVVLSACAKK 233
+ + G+ +A+ L+ ++++ N +P+E T VL++C
Sbjct: 319 YSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSS 378
Query: 234 RDLEFGIWVSSHIEK 248
G + S I K
Sbjct: 379 LGFILGRQIHSLIIK 393
>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 14/208 (6%)
Query: 59 SKLFTPCALSTFSSLEYARKMFDQIPQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
++L+ C + +E AR +FD+IP P N W+ +IRAY+S+D ++ ++ +++
Sbjct: 42 TRLYASC-----NEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKML- 95
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLA 171
NS P ++T PFV+KA A G+ IH F D+ + +L+ FYA CG+L
Sbjct: 96 NSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELE 155
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSAC 230
MA VF + K+D+V+WN+MISGF I L+ +M ++ + P+ T+V + A
Sbjct: 156 MAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPAL 215
Query: 231 AKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ L G V + + G DL +
Sbjct: 216 GRAGALREGKAVHGYCTRMGFSNDLVVK 243
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 23/233 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K IH+ + +DF D Y + L + C LE A K+FD++P+ ++ WN +I
Sbjct: 123 KLIHSHVNCSDFATDMYVCTALVDFYAKCG-----ELEMAIKVFDEMPKRDMVAWNAMIS 177
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+S +FL + PN T+ + A R R G+A+HG F
Sbjct: 178 GFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFS 237
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+DLV+ ++ YA + A VF + KK+ V+W++MI G+VE ++A E++ +M
Sbjct: 238 NDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQM 297
Query: 212 EVENVKPDEVTMV------VVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
V D V MV ++L CA+ DL G V + K G +DLT +
Sbjct: 298 LVN----DNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQ 346
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ + SL A + F +I ++ ++N+LI + P +SF +F ++ S P+ TL
Sbjct: 354 AKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEM-RTSGIRPDITTL 412
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A + G + HG + + I N+L+ Y CG L +A VF + K
Sbjct: 413 LGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHK 472
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+D+VSWN+M+ GF G ++A+ L+ M+ V PDEVT++ +LSAC+
Sbjct: 473 RDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACS 521
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY-FPNEFTLPFVIKA 133
YAR++FD + N TW+ +I Y ++ ++ +F Q++ N + ++
Sbjct: 258 YARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMG 317
Query: 134 AARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
AR G+ +H F DL + N++I FYA G L A+ F IG KDV+S+
Sbjct: 318 CARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISY 377
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
NS+I+G V E++ L+ EM ++PD T++ VL+AC+ L G
Sbjct: 378 NSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHG 428
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++T C L+ A+++FD + + ++ +WNT++ + ++ +F + +
Sbjct: 453 MYTKCG-----KLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSM-QETGV 506
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
P+E TL ++ A + G+ ++ + NS+ GD F +I
Sbjct: 507 NPDEVTLLAILSACSHS----------GLVDEGKQLFNSMSR-----GD-------FNVI 544
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ D +N M G+ ++A + +M E PD + +LSAC ++ E G
Sbjct: 545 PRID--HYNCMTDLLARAGYLDEAYDFVNKMPFE---PDIRVLGTLLSACWTYKNAELGN 599
Query: 241 WVSSHIEKNG 250
VS ++ G
Sbjct: 600 EVSKKMQSLG 609
>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 107/210 (50%), Gaps = 19/210 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFT----PCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
K++HA L Y + L T C + A ++F+ + NL +WN++I
Sbjct: 73 KQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACRVFESMEFRNLVSWNSMI 132
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR-----VGQAIHGMF 150
A ++ ++F QL Y P+ T V+KA A V R Q + F
Sbjct: 133 AAEE------EALLLFRQL-YREGLAPDWCTFSIVLKACAGFVTERHALAVYSQVVKAGF 185
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
EDD V++N+LIH YA CG ++ + VF + +DVVSWNSMI + G ++A+ L+ E
Sbjct: 186 EDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYALHGQAKEALHLFSE 245
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
M NV+PD TMV +LSAC+ +E GI
Sbjct: 246 M---NVRPDSATMVALLSACSHAGLVEEGI 272
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ AR++FD++ + N+ +W LI Y+ + F +F ++ + +PNEF VI
Sbjct: 8 LDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDMLVDC--YPNEFAFASVII 65
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA-VCGDLAMAY----C-VFVMIG 181
+ + G+ +H + + + N+LI Y+ C D + Y C VF +
Sbjct: 66 SC----DYVCGKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACRVFESME 121
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+++VSWNSMI+ E+A+ L+R++ E + PD T +VL ACA +
Sbjct: 122 FRNLVSWNSMIAA------EEEALLLFRQLYREGLAPDWCTFSIVLKACAGFVTERHALA 175
Query: 242 VSSHIEKNGIKMD 254
V S + K G + D
Sbjct: 176 VYSQVVKAGFEDD 188
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
YA CGDL A VF +G+++VVSW ++ISG+ + G + L+ +M V + P+E
Sbjct: 1 MYAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDMLV-DCYPNEFA 59
Query: 223 MVVVLSAC 230
V+ +C
Sbjct: 60 FASVIISC 67
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 121/242 (50%), Gaps = 23/242 (9%)
Query: 17 PTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYA 76
T +N G+Q H H + +H+ + ++ D Y+ +E +
Sbjct: 149 ATMEGLNLGNQIHCHVIK-----IGLHSDVFVSNALMDVYAKC-----------GRMENS 192
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
++F + P N TWNT+I + + ++ +FL ++ E T ++A A
Sbjct: 193 MELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNML-EYRVQATEVTYSSALRACAS 251
Query: 137 PVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
G IH + F+ D+V++N+LI YA CG + A VF ++ K+D VSWN+M
Sbjct: 252 LAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAM 311
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG-IWVSSHIEKNG 250
ISG+ G +A+ ++ +M+ VKPD++T V VLSACA L+ G + +S I+ +G
Sbjct: 312 ISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHG 371
Query: 251 IK 252
I+
Sbjct: 372 IE 373
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 9/221 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +H ++L D ++ + L S F L A K+FD++P+ N ++ TLI+ Y+
Sbjct: 58 KGLHCEILKRGGCLDLFAWNILLNMYVKSDF--LCDASKLFDEMPERNTISFVTLIQGYA 115
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S +++ +F++L + PN+FT V++A A +G IH D+
Sbjct: 116 ESVRFLEAIELFVRL--HREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDV 173
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+SN+L+ YA CG + + +F ++ V+WN++I G V+ G EKA+ L+ M
Sbjct: 174 FVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEY 233
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V+ EVT L ACA LE G+ + S K D+
Sbjct: 234 RVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDI 274
>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 111/204 (54%), Gaps = 8/204 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++ +M S+ D + S + + A ++ A K F +I + + W T++ +
Sbjct: 242 KLFCEMQSSGLMPDQVTISNILS--AYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQ 299
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLV 155
+ + + ++F +++ + P+ FT+ V+ + AR GQA+HG + DL+
Sbjct: 300 NGKEEDALLLFREMLLENVR-PDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLL 358
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+S++L+ Y+ CG+ A A+ VF + ++V+SWNSMI G+ + G +A+ LY EM EN
Sbjct: 359 VSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHEN 418
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG 239
+KPD +T V VLSAC +E G
Sbjct: 419 LKPDNITFVGVLSACMHAGLVERG 442
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 102/187 (54%), Gaps = 10/187 (5%)
Query: 52 FFDPYSASKLFTPCA-LSTFS---SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS 107
FD S +F+ A LS +S ++E R +FDQ+ + ++NT+I +S + Q+
Sbjct: 80 LFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQA 139
Query: 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIH 162
F+++ + ++T V+ A ++ + + G+ IHG + + + N+L +
Sbjct: 140 LEFFVRM-QEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTN 198
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
YA CG L A +F + K+VVSWNSMISG+++ G E +L+ EM+ + PD+VT
Sbjct: 199 MYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVT 258
Query: 223 MVVVLSA 229
+ +LSA
Sbjct: 259 ISNILSA 265
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 39/226 (17%)
Query: 33 LTNQKQLKRIHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + K+ K+IH ++++T F + + ++ C +L+ AR +FD++ N+
Sbjct: 168 LLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCG-----ALDQARWLFDRMVNKNVV 222
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+WN++I Y + +P +F ++ +S P++ T+ ++ A
Sbjct: 223 SWNSMISGYLQNGQPETCTKLFCEM-QSSGLMPDQVTISNILSA---------------- 265
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
Y CG + A F I +KD V W +M+ G + G E A+ L+R
Sbjct: 266 --------------YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFR 311
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EM +ENV+PD T+ V+S+CA+ L G V G+ DL
Sbjct: 312 EMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDL 357
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 31/125 (24%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS------------------- 193
D + N L+H YA G+L+ A +F + ++DV SWN+M+S
Sbjct: 57 DTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMS 116
Query: 194 ------------GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
GF G +A+E + M+ E + + T V VL AC++ D++ G
Sbjct: 117 VHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQ 176
Query: 242 VSSHI 246
+ I
Sbjct: 177 IHGRI 181
>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 119/221 (53%), Gaps = 8/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ IH ++ + + D AS L A F+ E + ++FD++P+ ++ +WNT+I +
Sbjct: 127 RMIHTLVVKSGYVCDVVVASSLVGMYA--KFNLFENSLQVFDEMPERDVASWNTVISCFY 184
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S E ++ +F ++ +S + PN +L I A +R + G+ IH FE D
Sbjct: 185 QSGEAEKALELFGRM-ESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDE 243
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++++L+ Y C L +A VF + +K +V+WNSMI G+V G + +E+ M +E
Sbjct: 244 YVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIE 303
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+P + T+ +L AC++ R+L G ++ ++ ++ + D+
Sbjct: 304 GTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADI 344
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 17/248 (6%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFS 71
PN +LTV +L K+ IH + + F D Y S L + C
Sbjct: 206 PNSVSLTVAISACSRLLWLERGKE---IHRKCVKKGFELDEYVNSALVDMYGKC-----D 257
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
LE AR++F ++P+ +L WN++I+ Y + + I +++ P++ TL ++
Sbjct: 258 CLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTR-PSQTTLTSIL 316
Query: 132 KAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A +R G+ IHG + D+ ++ SLI Y CG+ +A VF K
Sbjct: 317 MACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAE 376
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
SWN MIS ++ G + KA+E+Y +M VKPD VT VL AC++ LE G + I
Sbjct: 377 SWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSI 436
Query: 247 EKNGIKMD 254
++ ++ D
Sbjct: 437 SESRLETD 444
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 117/226 (51%), Gaps = 12/226 (5%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY--ARKMFDQIP-QPNLYTWNT 93
+++K +H ++L+ D L F+ ++ AR +F+ + ++Y WN+
Sbjct: 21 RRIKLVHQRILTLGLRRDVVLCKSLINV----YFTCKDHCSARHVFENFDIRSDVYIWNS 76
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
L+ YS + + +F +L+ S P+ FT P VIKA + +G+ IH +
Sbjct: 77 LMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKS 136
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ D+V+++SL+ YA + VF + ++DV SWN++IS F + G EKA+EL+
Sbjct: 137 GYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELF 196
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
ME +P+ V++ V +SAC++ LE G + K G ++D
Sbjct: 197 GRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELD 242
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 20/249 (8%)
Query: 1 METLSTPVISIPRHPNPTTLT-VNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPY--- 56
+E L+ +I R P+ TTLT + R + L K IH ++ + D Y
Sbjct: 294 VEILNRMIIEGTR-PSQTTLTSILMACSRSRNLLHG----KFIHGYVIRSVVNADIYVNC 348
Query: 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
S L+ C + A +F + + +WN +I +Y S ++ ++ Q+V
Sbjct: 349 SLIDLYFKCGEANL-----AETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMV- 402
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLA 171
+ P+ T V+ A ++ G+ IH E D ++ ++L+ Y+ CG+
Sbjct: 403 SVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEK 462
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A+ +F I KKDVVSW MIS + G +A+ + EM+ +KPD VT++ VLSAC
Sbjct: 463 EAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACG 522
Query: 232 KKRDLEFGI 240
++ G+
Sbjct: 523 HAGLIDEGL 531
>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 107/193 (55%), Gaps = 7/193 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
S SL+ A +F +IP+ +L +WN++I Y +++ + IFLQ+ P+
Sbjct: 360 GFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKK-PDRH 418
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM----FEDDLVISNSLIHFYAVCGDLAMAYCVF-VMI 180
TL ++ A A V +G IH + F DL I+NSL+ Y+ CG + A VF M
Sbjct: 419 TLSSILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMN 478
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++DV+SWN+MI G+ GF +A++L+ M+ NV+P +T + VL+ACA +E G
Sbjct: 479 LQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGR 538
Query: 241 W-VSSHIEKNGIK 252
+S + +GIK
Sbjct: 539 REFNSMVNTHGIK 551
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 20/185 (10%)
Query: 76 ARKMFDQIP--------QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
ARK+FD+IP + N+ +WN++I Y + + + + +F ++V + N
Sbjct: 269 ARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMIS 328
Query: 128 PFV----IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
+V +K A+ M E D + N +I ++ G L +A+ +F I +K
Sbjct: 329 GYVQILDMKEAS--------NLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEK 380
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+VSWNSMISG+ + ++ A+ ++ +M++E KPD T+ +LSACA DL G +
Sbjct: 381 SLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIH 440
Query: 244 SHIEK 248
+ K
Sbjct: 441 QLVTK 445
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 6/154 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD N TWN +I AY E +++ +F ++ N L I
Sbjct: 76 ARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMP-NRDIVSWNLMLSGYISCGG 134
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
+ V+ R M E D V N+++ YA G + A +F + +++VVSWN+M+SG+
Sbjct: 135 KFVE-RARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGY 193
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
+ G EKAIE ++ M K D ++ ++S
Sbjct: 194 LMNGHVEKAIEFFKLMP----KRDSASLRALISG 223
>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
Length = 641
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 98/169 (57%), Gaps = 5/169 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +MFD++ +P++ TW++++ + + P Q+ F ++V S P+ TL ++ A
Sbjct: 96 ALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACT 155
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ R+G+ +HG F +DL + NSL++ YA A +F MI +KDV+SW++
Sbjct: 156 KLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWST 215
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+I+ +V+ G +A+ ++ +M + +P+ T++ VL ACA DLE G
Sbjct: 216 VIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQG 264
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 8/182 (4%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+ + +LY WNTL+++ S ++ + + ++ P+ FTLP +KA +
Sbjct: 1 MTKRSLYQWNTLLKSLSR-EKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNY 59
Query: 143 GQAIHGMFE------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
G+ IHG + DL + +SLI+ Y CG + A +F + K D+V+W+SM+SGF
Sbjct: 60 GEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFE 119
Query: 197 EGGFFEKAIELYREMEV-ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ G +A+E +R M + +V PD VT++ ++SAC K + G V + + G DL
Sbjct: 120 KNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDL 179
Query: 256 TF 257
+
Sbjct: 180 SL 181
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 9/224 (4%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+N + + +H ++ F D + L A S + + A +F I + ++ +W+
Sbjct: 157 LSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKS--RAFKEAVNLFKMIAEKDVISWS 214
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
T+I Y + ++ ++F ++ + PN T+ V++A A G+ H +
Sbjct: 215 TVIACYVQNGAAAEALLVFNDMMDDGTE-PNVATVLCVLQACAAAHDLEQGRKTHELAIR 273
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
E ++ +S +L+ Y C AY VF I +KDVVSW ++ISGF G ++IE
Sbjct: 274 KGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEE 333
Query: 208 YREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ M +E N +PD + MV VL +C++ LE S++ K G
Sbjct: 334 FSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYG 377
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A +F +IP+ ++ +W LI ++ + +S F ++ + P+ + V+ +
Sbjct: 297 EEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGS 356
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ + H F+ + I SL+ Y+ CG L A VF I KD V W
Sbjct: 357 CSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVW 416
Query: 189 NSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACA 231
S+I+G+ G KA+E + M + VKP+EVT + +LSAC+
Sbjct: 417 TSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACS 460
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q K H+ ++ F +P+ S +L++ C SL A K+F+ I + W +
Sbjct: 364 EQAKCFHSYVIKYGFDSNPFIGASLVELYSRCG-----SLGNASKVFNGIALKDTVVWTS 418
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
LI Y + ++ F +V +S PNE T ++ A + G I + +D
Sbjct: 419 LITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVND 478
Query: 154 LVISNSLIHFYAVCGDL 170
++ +L H YAV DL
Sbjct: 479 YRLAPNLEH-YAVLVDL 494
>gi|302820681|ref|XP_002992007.1| hypothetical protein SELMODRAFT_134551 [Selaginella moellendorffii]
gi|300140249|gb|EFJ06975.1| hypothetical protein SELMODRAFT_134551 [Selaginella moellendorffii]
Length = 947
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 106/209 (50%), Gaps = 11/209 (5%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL-STFSSLEYARKMFDQIPQPNLYTW 91
L KQ +IHA++L D A+ L + + SLE ARK+F + + + W
Sbjct: 444 LRASKQSSQIHARVLEAGLERDVVVANALTALLNMYARCHSLEDARKVFAGMCRKDAICW 503
Query: 92 NTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-- 147
N+L+ AY+ S ++ IF + L PN+ T I A A + G H
Sbjct: 504 NSLLAAYAQSGSGKEALQIFREMDLEGCKSMKPNDVTFVSTIDACANSMDLASGIVFHRR 563
Query: 148 ----GMFEDDLVISNSLIHFYAVCGDLAMAYCVF-VMIGKKDVVSWNSMISGFVEGGFFE 202
GM + ++V++NSLI Y C L A VF ++G +D+VSWN++IS F + G
Sbjct: 564 AAEVGM-DSNVVVANSLIKMYGKCKRLEEAMSVFNRILGIRDLVSWNALISAFAQNGDGR 622
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACA 231
+A+E Y M E V+PD +T + VL ACA
Sbjct: 623 RALETYWAMIREGVRPDRITFISVLDACA 651
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 18/224 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KRIH + + + + ++ C +LE ARK+ D++ N+++W ++
Sbjct: 49 KRIHRHSVECGMGKNRFVENLLINMYGKCG-----ALEEARKILDRMEDSNVFSWTIMLA 103
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMF 150
AY+ + + F ++ N T +I A F GQ H G
Sbjct: 104 AYAQNGHLDDALECFWKMELEGVR-ANRVT---IISALGCCKSFSRGQWFHSRIKQEGFL 159
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
DD++I N+L+ Y C ++ A VF I KD+VSW +MIS FV+ G ++A+ +
Sbjct: 160 PDDVMIQNALVSLYGRCCEVDQARSVFDEICNKDLVSWTAMISAFVQNGHPDRAMVCFWS 219
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
M+ + VKP VT + +L A + RD + I + G++ D
Sbjct: 220 MQADGVKPCRVTFITILEAVMETRDARVCEEIHLQIIETGLEKD 263
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 99/184 (53%), Gaps = 9/184 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ AR +FD+I +L +W +I A+ + P ++ + F + + P T +++
Sbjct: 179 VDQARSVFDEICNKDLVSWTAMISAFVQNGHPDRAMVCFWSMQADGVK-PCRVTFITILE 237
Query: 133 AAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A RV + IH G+ +DD ++ N L+ Y CGD+ F + +K+VV
Sbjct: 238 AVMETRDARVCEEIHLQIIETGLEKDDKLL-NLLVRSYGKCGDMEKMKESFEKLDEKNVV 296
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
SW+ I+ F + G+F +AI ++M++E V+ +EVT V +L A + ++E G ++ S I
Sbjct: 297 SWSGTIAAFSQNGYFWEAIRQLQKMDLEGVQANEVTFVSILDASVWE-EIEEGEFLRSRI 355
Query: 247 EKNG 250
++G
Sbjct: 356 IESG 359
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 110/224 (49%), Gaps = 14/224 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ IH Q++ T D + L + +E ++ F+++ + N+ +W+ I A+S
Sbjct: 249 EEIHLQIIETGLEKDDKLLNLLVR--SYGKCGDMEKMKESFEKLDEKNVVSWSGTIAAFS 306
Query: 100 SSD---EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA----RPVQFRVGQAIHGMFED 152
+ E I+ LQ + NE T ++ A+ +F + I +
Sbjct: 307 QNGYFWEAIRQ----LQKMDLEGVQANEVTFVSILDASVWEEIEEGEFLRSRIIESGYGS 362
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVF-VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ + NSL++ Y C L A VF M +K+ +SW+S+++ + + +A++L++ M
Sbjct: 363 NVAVCNSLVNMYGKCHSLGNAKEVFWSMEERKNEISWSSLVAAYAQNNQATEAMKLFQHM 422
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++E +KPD VT++ VL AC R + + + + + G++ D+
Sbjct: 423 DLEGLKPDRVTLISVLDACGDLRASKQSSQIHARVLEAGLERDV 466
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS 118
K++ C LE A +F++I +L +WN LI A++ + + ++ + ++
Sbjct: 581 KMYGKC-----KRLEEAMSVFNRILGIRDLVSWNALISAFAQNGDGRRALETYWAMIREG 635
Query: 119 PYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMA 173
P+ T V+ A A G+ IH G FE + +L++ Y CG+ A
Sbjct: 636 VR-PDRITFISVLDACATLGSIAEGREIHRQASEGGFESVDAVLGTLVNMYGRCGNAMEA 694
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F + ++D ++WN++ + + G +A+ + R M+ E VKPD VT + +L CA
Sbjct: 695 ELAFGKLQQRDAIAWNAVAAAITQTGDQRRALGILRGMDNEGVKPDNVTFITLLDTCA 752
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 111 FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA 165
L+ + N P+ T ++ A G+ H F D+++ N+L++ Y
Sbjct: 728 ILRGMDNEGVKPDNVTFITLLDTCADCNALVEGKIFHARAMELGFGFDIILGNALLNMYG 787
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
CG L A VF + ++ VSWN++I + + G + AI L+R+M++E + P++V+ +
Sbjct: 788 KCGSLREANRVFAAMPVRNSVSWNTLIVAYAQNGHVKLAIGLFRDMDLEGIVPNQVSFLS 847
Query: 226 VLSACAKKRDLEFG 239
+ AC+ LE G
Sbjct: 848 IFFACSHAGMLEEG 861
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYC 175
N T ++ R G+ IH GM ++ V N LI+ Y CG L A
Sbjct: 27 ANPSTYALMLDWCVRLGALEAGKRIHRHSVECGMGKNRFV-ENLLINMYGKCGALEEARK 85
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+ + +V SW M++ + + G + A+E + +ME+E V+ + VT++ L C +
Sbjct: 86 ILDRMEDSNVFSWTIMLAAYAQNGHLDDALECFWKMELEGVRANRVTIISALGCC---KS 142
Query: 236 LEFGIWVSSHIEKNG 250
G W S I++ G
Sbjct: 143 FSRGQWFHSRIKQEG 157
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 6/190 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+ YAR++FD++ +P + WNT+++ Y + P ++ ++ ++ + P+ FT PFV
Sbjct: 83 GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVR-PDPFTFPFV 141
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
IKA A + G +HG E + L+ Y G+L A +F + ++D+
Sbjct: 142 IKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDL 201
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V+WN++I+ V+ GF KA++ +REM + +KPD VT+V LSAC LE G +
Sbjct: 202 VAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEF 261
Query: 246 IEKNGIKMDL 255
+ GI ++
Sbjct: 262 AREEGIDSNI 271
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 12/170 (7%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSS---SDEPIQSFMIFLQLVYNSPYFPNEFT 126
F L A +F + + +L WN LI S + +QSF + + + P+ T
Sbjct: 183 FGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSF----REMGMAGIKPDSVT 238
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIH-----FYAVCGDLAMAYCVFVMIG 181
+ + A G+ I+ ++ + SN ++H A CGD+ A +F +
Sbjct: 239 IVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMP 298
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+++V+SW+++I G+ G EKA+ L+ M+ + V+P+ VT + VLSAC+
Sbjct: 299 QRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACS 348
>gi|302781873|ref|XP_002972710.1| hypothetical protein SELMODRAFT_98396 [Selaginella moellendorffii]
gi|300159311|gb|EFJ25931.1| hypothetical protein SELMODRAFT_98396 [Selaginella moellendorffii]
Length = 341
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 131/259 (50%), Gaps = 22/259 (8%)
Query: 1 METLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTN-------QKQLKRIHAQMLSTDFFF 53
M S+ + ++ R ++ + G Q H L+ + L R++ S D
Sbjct: 1 MSNGSSTIAALLRECG-SSRDLARGRQLHSQILSAGYRSTVLENSLVRMYGDCGSLDEAV 59
Query: 54 DPYS---ASKLFT-PCALSTFSS---LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQ 106
D +S + +F+ LS F+ L+ AR +F+++PQ + +W ++ AY+
Sbjct: 60 DAFSRISSRNVFSWNILLSAFAQRGHLDLARALFEKLPQRCIVSWTEMVSAYAQHGHFQS 119
Query: 107 SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSL 160
SF++F ++ P T +I + A G+AIH G F LVI NSL
Sbjct: 120 SFVLFRRMQLEGTR-PTYVTYATMIDSCAEAAALGDGRAIHERILQLGYFPGILVIGNSL 178
Query: 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220
I+FY+ CG + A VF + ++D+++W++++SG+ G E++ +L++ M +E + P
Sbjct: 179 INFYSSCGAVEEALDVFQSMRRRDLITWSTIVSGYAWNGLGERSAQLFQFMLLEGLDPSS 238
Query: 221 VTMVVVLSACAKKRDLEFG 239
VT+V VL++C+ L+FG
Sbjct: 239 VTLVNVLTSCSHGGLLDFG 257
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%)
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
N L+ +A G L +A +F + ++ +VSW M+S + + G F+ + L+R M++E +
Sbjct: 74 NILLSAFAQRGHLDLARALFEKLPQRCIVSWTEMVSAYAQHGHFQSSFVLFRRMQLEGTR 133
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
P VT ++ +CA+ L G + I + G
Sbjct: 134 PTYVTYATMIDSCAEAAALGDGRAIHERILQLG 166
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 128/232 (55%), Gaps = 9/232 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L ++ K++H+++++ F D + + L A E K+FD++ + N TWN
Sbjct: 289 LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYA--KCDDEESCLKVFDEMGERNQVTWN 346
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---- 148
++I A + + ++FL++ S Y N F L ++ A+A G+ +HG
Sbjct: 347 SIISAEAQFGHFNDALVLFLRM-QESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVR 405
Query: 149 -MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ D+++ ++L+ Y+ CG + A+ VF + +++ VS+N++++G+V+ G E+A+EL
Sbjct: 406 NLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALEL 465
Query: 208 YREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
Y +M+ E+ ++PD+ T +L+ CA +R+ G + +H+ + I ++ E
Sbjct: 466 YHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVE 517
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 13/224 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
K IH QM+S + D Y +K+ A S L YARK+F+++P+ NL WNT+I AY
Sbjct: 91 KSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAY 150
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA--------AARPVQFRVGQAIHGMF 150
+ D+ ++ ++ ++ S F ++FT P VIKA R +Q V +
Sbjct: 151 ARVDDYMEVLRLYGRM-RGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSV---VKAGL 206
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+L + +L+ YA G + A I VV+WN++I+G+V+ +E+A ++
Sbjct: 207 NCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDR 266
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
M V PD T L C R + G V S + G K D
Sbjct: 267 MLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGD 310
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 99/180 (55%), Gaps = 7/180 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+ +FDQ+ Q N WN+++ Y++ +SF FL+++ + + + T+ ++ +
Sbjct: 665 AKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEY-DVLTMVTIVNLCS 723
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
G +H G +V+ +L+ Y+ CG + A VF + K++VSWN
Sbjct: 724 SLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWN 783
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+MISG+ + G ++A+ LY EM + + P+EVT + +LSAC+ +E G+ + + ++++
Sbjct: 784 AMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQED 843
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 110/233 (47%), Gaps = 21/233 (9%)
Query: 22 VNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFD 81
+ G + H H + N +L++D + +++ C + +E A ++F
Sbjct: 393 IGKGRELHGHLVRN----------LLNSDIILGS-ALVDMYSKCGM-----VEEAHQVFR 436
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
+ + N ++N L+ Y + ++ ++ + P++FT ++ A
Sbjct: 437 SLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDN 496
Query: 142 VGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
G+ IH ++++ L+H Y+ CG L A +F + +++ SWNSMI G+
Sbjct: 497 QGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQ 556
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+ G ++A+ L+++M++ +KPD ++ +LS+C D + G + + I +N
Sbjct: 557 QNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN 609
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 120/272 (44%), Gaps = 51/272 (18%)
Query: 18 TTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLE 74
TTL +QR N Q ++IHA ++ + + ++L ++ C L
Sbjct: 483 TTLLTLCANQR------NDNQGRQIHAHLIRANITKNIIVETELVHMYSECG-----RLN 531
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
YA+++F+++ + N Y+WN++I Y + E ++ +F Q+ N P+ F+L ++ +
Sbjct: 532 YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIK-PDCFSLSSMLSSC 590
Query: 135 ARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ G+ +H E++ ++ L+ YA CG + A+ V+ KKDV+ N
Sbjct: 591 VSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNN 650
Query: 190 SMISGFVEGGFFEKAIELYREMEVEN-------------------------------VKP 218
M+S FV G A L+ +ME N ++
Sbjct: 651 VMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEY 710
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
D +TMV +++ C+ LE G + S I K G
Sbjct: 711 DVLTMVTIVNLCSSLPALEHGDQLHSLIIKKG 742
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 10/204 (4%)
Query: 61 LFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
LF AL + F ++ A D+I ++ TWN +I Y +++ IF +++
Sbjct: 210 LFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRML- 268
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLA 171
P+ FT ++ G+ +H F+ D + N+LI YA C D
Sbjct: 269 KIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEE 328
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
VF +G+++ V+WNS+IS + G F A+ L+ M+ K + + +L A A
Sbjct: 329 SCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASA 388
Query: 232 KKRDLEFGIWVSSHIEKNGIKMDL 255
D+ G + H+ +N + D+
Sbjct: 389 GLADIGKGRELHGHLVRNLLNSDI 412
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ AR +FD + N+ +WN +I YS ++ +++ ++ Y PNE T
Sbjct: 759 SKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMY-PNEVTF 817
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
++ A + G+ E+ L I S+ Y + C+ ++G+
Sbjct: 818 LAILSACSHT----------GLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGR----- 862
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G E A E +M +E P+ T +L AC +D++ G
Sbjct: 863 ----------AGRLEDAKEFVEKMPIE---PEVSTWGALLGACRVHKDMDMG 901
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 10/139 (7%)
Query: 127 LPF--VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG---DLAMAYCV 176
LP+ +I+ F+ G++IH + D + ++ YA G DL A +
Sbjct: 72 LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKL 131
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + ++++ +WN+MI + + + + LY M D+ T V+ AC D+
Sbjct: 132 FEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDM 191
Query: 237 EFGIWVSSHIEKNGIKMDL 255
+ S + K G+ +L
Sbjct: 192 GGVRQLQSSVVKAGLNCNL 210
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 111/207 (53%), Gaps = 4/207 (1%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
L + HAQ + + FD + +KL L FS+ +AR +F +P+P+++ +N L+R
Sbjct: 27 HLAQTHAQFILNGYRFDLATLTKLTQK--LFDFSATRHARALFFSVPKPDIFLFNVLVRG 84
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV--GQAIHGMFEDDLV 155
+S +D P S ++ L N+ P+ FT F + A + + +I + ++
Sbjct: 85 FSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVF 144
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ ++L+ Y + A VF + ++D V WN+MI+G V+ F+ +I+L+REM +
Sbjct: 145 VGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADG 204
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWV 242
V+ D T+ VL A A+ ++L+ G+ +
Sbjct: 205 VRVDSSTVTAVLPAAAELQELKVGMGI 231
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 103/195 (52%), Gaps = 8/195 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH + + +P + S FT + + ++ AR +FD+ P+ + WN +I Y+ +
Sbjct: 332 IHGFCVKSGIILNP-TVSTAFTA-IYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQN 389
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
+ +F +++ + + PN T+ ++ A A+ G+ +H + E ++ +
Sbjct: 390 GSTETAISLFKEMM-KTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYV 448
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S +L+ YA CG+++ A+ +F + +K+ V+WN+MI G+ G+ +A++LY EM
Sbjct: 449 STALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGY 508
Query: 217 KPDEVTMVVVLSACA 231
P VT + VL AC+
Sbjct: 509 NPSAVTFLSVLYACS 523
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 18/233 (7%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLY 89
+N K L +HA + D Y S +F AL FS + YARK+FD +P+ +
Sbjct: 122 SNDKHLMLLHAHSI-----IDGY-GSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTV 175
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-- 147
WNT+I + S +F ++V + + T+ V+ AAA + +VG I
Sbjct: 176 LWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSS-TVTAVLPAAAELQELKVGMGIQCL 234
Query: 148 ----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
G D V++ LI Y+ CGD+ A +F I + D++++N+MISGF G E
Sbjct: 235 ALKIGFGFCDYVLT-GLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTEC 293
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+++L+RE+ + T+V ++ + L + K+GI ++ T
Sbjct: 294 SVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPT 346
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 8/216 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
I L F F Y + L + S + AR +F +I +P+L +N +I ++++
Sbjct: 231 IQCLALKIGFGFCDYVLTGLIS--LYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTAN 288
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI----- 156
S +F +L+++ + T+ +I + + +IHG +I
Sbjct: 289 GGTECSVKLFRELLFSGERVSSS-TIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTV 347
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S + Y ++ +A +F +K VV+WN+MISG+ + G E AI L++EM
Sbjct: 348 STAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEF 407
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
P+ VT+ +LSACA+ L FG WV I+ ++
Sbjct: 408 TPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLE 443
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 121/221 (54%), Gaps = 10/221 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH ++ FD + ++ L A F +LE ARK F Q+ ++ +WN++I AY +
Sbjct: 338 IHLYVIKHGLEFDLFVSNALINMYA--KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQN 395
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FEDDLV 155
D+P+ + F+++ N + P+ TL + A+ + +++HG +D+V
Sbjct: 396 DDPVTAHGFFVKMQLNG-FQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVV 454
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVE 214
I N+++ YA G L A+ VF +I KDV+SWN++I+G+ + G +AIE+Y+ M E +
Sbjct: 455 IGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECK 514
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ P++ T V +L A A L+ G+ + + K + +D+
Sbjct: 515 EIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDV 555
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 107/193 (55%), Gaps = 8/193 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ + +R FDQIPQ ++Y WN++I AY + ++ F QL+ S P+ +T
Sbjct: 162 ANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTF 221
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
P V+KA V G+ IH F+ ++ ++ SLIH Y+ G +A +F +
Sbjct: 222 PPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPF 278
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+D+ SWN+MISG ++ G +A+++ EM +E +K + VT+V +L C + D+ + +
Sbjct: 279 RDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLI 338
Query: 243 SSHIEKNGIKMDL 255
++ K+G++ DL
Sbjct: 339 HLYVIKHGLEFDL 351
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 5/188 (2%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ A K+F+ IP ++ +WNTLI Y+ + ++ ++ + PN+ T ++
Sbjct: 469 LDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 528
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A + G IHG D+ ++ LI Y CG L A +F + ++ V+
Sbjct: 529 AYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 588
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN++IS G EK ++L+ EM E VKPD VT V +LSAC+ +E G W ++
Sbjct: 589 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ 648
Query: 248 KNGIKMDL 255
+ GIK L
Sbjct: 649 EYGIKPSL 656
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE-LYREME 212
+ IS L++ YA GD++++ C F I +KDV +WNSMIS +V G F +AI Y+ +
Sbjct: 151 IFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLL 210
Query: 213 VENVKPDEVTMVVVLSACAKKRD 235
V ++PD T VL AC D
Sbjct: 211 VSEIRPDFYTFPPVLKACGTLVD 233
>gi|302804045|ref|XP_002983775.1| hypothetical protein SELMODRAFT_118751 [Selaginella moellendorffii]
gi|300148612|gb|EFJ15271.1| hypothetical protein SELMODRAFT_118751 [Selaginella moellendorffii]
Length = 363
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L AR++FD +PQ N+ +WN +I Y + + IF +L+ + PN+ T I
Sbjct: 73 LGEARRLFDAMPQRNVASWNAMISGYVKNGRGWDALEIF-KLMDLTGMHPNDITFMSAID 131
Query: 133 AAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A GQ +H E D + N+L+H Y CG LAMA +F + +D S
Sbjct: 132 ACADLQALLEGQILHAEITASGTEPDAYLRNALLHMYGRCGSLAMAESLFDDMPDRDRWS 191
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
WN MIS + GG +++ + EM ++ + PD VT V VL AC+ ++ G
Sbjct: 192 WNVMISSYAHGGHTRRSLAFFAEMALDGITPDGVTFVAVLGACSHAGRVDLG 243
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 88/189 (46%), Gaps = 35/189 (18%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + L A +F +IP+ ++ +W +++ AY+ + +++ IF +
Sbjct: 4 AYAKGGHLAEALDVFAKIPKKDVVSWTSIVTAYAENGHILEARRIFDK------------ 51
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
M + ++V ++I Y G L A +F + +++V
Sbjct: 52 -----------------------MPDKNVVSWTAMITGYIENGCLGEARRLFDAMPQRNV 88
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
SWN+MISG+V+ G A+E+++ M++ + P+++T + + ACA + L G + +
Sbjct: 89 ASWNAMISGYVKNGRGWDALEIFKLMDLTGMHPNDITFMSAIDACADLQALLEGQILHAE 148
Query: 246 IEKNGIKMD 254
I +G + D
Sbjct: 149 ITASGTEPD 157
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+I+ YA G LA A VF I KKDVVSW S+++ + E G +A ++ +M +NV
Sbjct: 1 MINAYAKGGHLAEALDVFAKIPKKDVVSWTSIVTAYAENGHILEARRIFDKMPDKNV 57
>gi|302820510|ref|XP_002991922.1| hypothetical protein SELMODRAFT_134446 [Selaginella moellendorffii]
gi|300140308|gb|EFJ07033.1| hypothetical protein SELMODRAFT_134446 [Selaginella moellendorffii]
Length = 690
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 26/240 (10%)
Query: 21 TVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF 80
+++ G H H L + K K +L +++ C S+ A++ F
Sbjct: 51 SLSQGRYIHAHILASGKSGKTFLGNLLV-----------RMYGKCG-----SIADAKEAF 94
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
DQI + N+++W ++ A++ Q+ I+ +V P+ + + F
Sbjct: 95 DQIHRKNVFSWTIMLGAFADCGHHRQAIQIYHAMVLEGVR-PDCVAFASIAGICSELQCF 153
Query: 141 RVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
+ G+AIH E D++++N+L+ Y+ CG + A CVF I K+ +SWN+MI+ F
Sbjct: 154 QAGKAIHDCVLEQGAESDVIVANNLVTMYSKCGRIDGARCVFRRIKNKNPISWNAMIAAF 213
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ G F A+ELY VE+ PD++T+++ ACA DL+ G + + + G++ DL
Sbjct: 214 AQCGDFASALELY----VEHPVPDKITLILAAKACASLGDLDRGREIHARAVELGLESDL 269
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 18/227 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH +L D A+ L T S ++ AR +F +I N +WN +I A++
Sbjct: 157 KAIHDCVLEQGAESDVIVANNLVT--MYSKCGRIDGARCVFRRIKNKNPISWNAMIAAFA 214
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ F L+L P P++ TL KA A G+ IH E DL
Sbjct: 215 QCGD----FASALELYVEHP-VPDKITLILAAKACASLGDLDRGREIHARAVELGLESDL 269
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKK--DVVSWNSMISGFVEGGFFEKAIELYRE-M 211
+++NSLI Y C + A +F + K DV+SWNS+I+ ++ G +A+EL+RE M
Sbjct: 270 LVANSLIGMYGKCYCVGDAKRLFDGLEAKNRDVISWNSIIAAYILAGMSSQALELFRERM 329
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+VE P+ +T + ++ AC+ DLE G W+ I + ++ E
Sbjct: 330 DVE---PNRITFIALIDACSTLCDLEQGRWIHERIRSSEFAREVAVE 373
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 12/195 (6%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDE-PIQSFMIFLQLVYNSPYFPNEFTLP 128
F + A +F + ++ W +I A+S + +++ F Q+ + P+E T
Sbjct: 413 FGCVADAMAVFSGMRSRDVVAWTAMITAFSQQEHTSMEAVDYFCQMDLDGSK-PDEVTFA 471
Query: 129 FVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFV-MIGK 182
V+ + AR G+++H F+ D+V+ +L+ Y+ CG L A F + G
Sbjct: 472 SVLGSIARLGLLSRGRSVHCDVLACGFQSDVVVGTALLDMYSKCGSLIDAKRAFDDLGGS 531
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC--AKKRDLEFGI 240
+++VSWN+MI+ + G + ELYR M +E V+P++VT +L C D E GI
Sbjct: 532 RNLVSWNAMIAAMAKHGDWSSGFELYRAMILEGVRPNDVTFTNMLFLCSHGGGGDRECGI 591
Query: 241 W--VSSHIEKNGIKM 253
W +S + + G+K+
Sbjct: 592 WDACASIVLEFGVKI 606
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 117/280 (41%), Gaps = 44/280 (15%)
Query: 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL 73
HP P +T+ + L + + + IHA+ + D A+ L +
Sbjct: 229 HPVPDKITLILAAKACAS-LGDLDRGREIHARAVELGLESDLLVANSLIG--MYGKCYCV 285
Query: 74 EYARKMFDQIPQPN--LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
A+++FD + N + +WN++I AY + Q+ +F + + PN T +I
Sbjct: 286 GDAKRLFDGLEAKNRDVISWNSIIAAYILAGMSSQALELFRERM---DVEPNRITFIALI 342
Query: 132 KAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDL--AMA----------- 173
A + G+ IH F ++ + N L+ YA CG + AMA
Sbjct: 343 DACSTLCDLEQGRWIHERIRSSEFAREVAVENGLLLMYAKCGSIEEAMAIFESMEGRRTL 402
Query: 174 -------YC----------VFVMIGKKDVVSWNSMISGFVEGGFFE-KAIELYREMEVEN 215
YC VF + +DVV+W +MI+ F + +A++ + +M+++
Sbjct: 403 ATSLVIMYCKFGCVADAMAVFSGMRSRDVVAWTAMITAFSQQEHTSMEAVDYFCQMDLDG 462
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
KPDEVT VL + A+ L G V + G + D+
Sbjct: 463 SKPDEVTFASVLGSIARLGLLSRGRSVHCDVLACGFQSDV 502
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 121/221 (54%), Gaps = 10/221 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH ++ FD + ++ L A F +LE ARK F Q+ ++ +WN++I AY +
Sbjct: 338 IHLYVIKHGLEFDLFVSNALINMYA--KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQN 395
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FEDDLV 155
D+P+ + F+++ N + P+ TL + A+ + +++HG +D+V
Sbjct: 396 DDPVTAHGFFVKMQLNG-FQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVV 454
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVE 214
I N+++ YA G L A+ VF +I KDV+SWN++I+G+ + G +AIE+Y+ M E +
Sbjct: 455 IGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECK 514
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ P++ T V +L A A L+ G+ + + K + +D+
Sbjct: 515 EIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDV 555
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 108/193 (55%), Gaps = 8/193 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ + +R FDQIPQ ++YTWN++I AY + ++ F QL+ S P+ +T
Sbjct: 162 ANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTF 221
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
P V+KA V G+ IH F+ ++ ++ SLIH Y+ G +A +F +
Sbjct: 222 PPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPF 278
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+D+ SWN+MISG ++ G +A+++ EM +E +K + VT+V +L C + D+ + +
Sbjct: 279 RDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLI 338
Query: 243 SSHIEKNGIKMDL 255
++ K+G++ DL
Sbjct: 339 HLYVIKHGLEFDL 351
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 5/188 (2%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ A K+F+ I ++ +WNTLI Y+ + ++ ++ + PN+ T ++
Sbjct: 469 LDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 528
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A + G IHG D+ ++ LI Y CG L A +F + ++ V+
Sbjct: 529 AYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 588
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN++IS G EK ++L+ EM E VKPD VT V +LSAC+ +E G W ++
Sbjct: 589 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ 648
Query: 248 KNGIKMDL 255
+ GIK L
Sbjct: 649 EYGIKPSL 656
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE-LYREME 212
+ IS L++ YA GD++++ C F I +KDV +WNSMIS +V G F +AI Y+ +
Sbjct: 151 IFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLL 210
Query: 213 VENVKPDEVTMVVVLSACAKKRD 235
V ++PD T VL AC D
Sbjct: 211 VSEIRPDFYTFPPVLKACGTLVD 233
>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 105/187 (56%), Gaps = 7/187 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FD++P+ ++ W T+I Y+ +E Q++ +F+ +V N PN FT+ V+KA
Sbjct: 63 ARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNGNDPPNAFTISSVLKACK 122
Query: 136 RPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCG-DLAMAYCVFVMIGKKDVVSW 188
+ G+ +HG+ E + + N+L+ YA CG + A VF I +K+VVSW
Sbjct: 123 GMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMRDACVVFHDIKEKNVVSW 182
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
++I+G+ G +A++++REM ++ V + ++ + + ACA FG + + + K
Sbjct: 183 TTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACASIGSQNFGRQIHTAVIK 242
Query: 249 NGIKMDL 255
+G + DL
Sbjct: 243 HGFESDL 249
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 11/207 (5%)
Query: 40 KRIHAQMLSTDFFFD-PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
++IH ++ F D P + S L C S A K F+ + + +L TWNTLI Y
Sbjct: 234 RQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSE---ANKYFNDMTEKDLITWNTLIAGY 290
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
SD I+ F IF Q+ + + PN FT ++ A A + GQ +HG + +
Sbjct: 291 ERSDS-IEPFFIFSQM-ESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGN 348
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L ++N+LI YA CG++ + F + ++VSW SM+ G+ G+ ++A+EL+ EM
Sbjct: 349 LELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVR 408
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGI 240
++PD+V + VL AC+ ++ G+
Sbjct: 409 SGIRPDQVVFMAVLHACSHAGLVDQGL 435
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 11/200 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++ C + + A +F I + N+ +W TLI Y+ ++ IF +++ +
Sbjct: 156 MYASCGVG----MRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVA 211
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
N ++ ++A A G+ IH FE DL ++NS++ Y CG L+ A
Sbjct: 212 L-NPHSISIAVRACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANK 270
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
F + +KD+++WN++I+G+ E ++ +ME E P+ T +++ACA
Sbjct: 271 YFNDMTEKDLITWNTLIAGYERSDSIEPFF-IFSQMESEGFSPNCFTFTSLVAACANAAA 329
Query: 236 LEFGIWVSSHIEKNGIKMDL 255
L+ G V I + G+ +L
Sbjct: 330 LQCGQQVHGGIFRRGLDGNL 349
>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 107/193 (55%), Gaps = 7/193 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
S SL+ A +F +IP+ +L +WN++I Y +++ + IFLQ+ P+
Sbjct: 360 GFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKK-PDRH 418
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM----FEDDLVISNSLIHFYAVCGDLAMAYCVF-VMI 180
TL ++ A A V +G IH + F DL I+NSL+ Y+ CG + A VF M
Sbjct: 419 TLSSILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMN 478
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++DV+SWN+MI G+ GF +A++L+ M+ NV+P +T + VL+ACA +E G
Sbjct: 479 LQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGR 538
Query: 241 W-VSSHIEKNGIK 252
+S + +GIK
Sbjct: 539 REFNSMVNTHGIK 551
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 20/185 (10%)
Query: 76 ARKMFDQIP--------QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
ARK+FD+IP + N+ +WN++I Y + + + + +F ++V + N
Sbjct: 269 ARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMIS 328
Query: 128 PFV----IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
+V +K A+ M E D + N +I ++ G L +A+ +F I +K
Sbjct: 329 GYVQILDMKEAS--------NLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEK 380
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+VSWNSMISG+ + ++ A+ ++ +M++E KPD T+ +LSACA DL G +
Sbjct: 381 SLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIH 440
Query: 244 SHIEK 248
+ K
Sbjct: 441 QLVTK 445
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 6/154 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD N TWN +I AY E +++ +F ++ N L I
Sbjct: 76 ARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMP-NRDIVSWNLMLSGYISCGG 134
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
+ V+ R M E D V N+++ YA G + A +F + +++VVSWN+M+SG+
Sbjct: 135 KFVE-RARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGY 193
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
+ G EKAIE ++ M K D ++ ++S
Sbjct: 194 LMNGHVEKAIEFFKLMP----KRDSASLRALVSG 223
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+LE A +F+Q+P ++ +W T+I+ YS + ++ +F +++ P+E T+
Sbjct: 979 LGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMM-EEGIIPDEVTMST 1037
Query: 130 VIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
VI A A +G+ +H F D+ I ++L+ Y+ CG L A VF + KK+
Sbjct: 1038 VISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKN 1097
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+ WNS+I G GF ++A++++ +ME+E+VKP+ VT V V +AC
Sbjct: 1098 LFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTAC 1143
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 37/189 (19%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S + ARK+FD++P+ + W T++ AY
Sbjct: 915 SATGRIREARKVFDEMPERDDIAWTTMVSAYR---------------------------- 946
Query: 128 PFVIKAAARPVQFRVGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
R + ++ + M E + SN LI+ Y G+L A +F + KD++
Sbjct: 947 --------RVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII 998
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
SW +MI G+ + + +AI ++ +M E + PDEVTM V+SACA LE G V +
Sbjct: 999 SWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYT 1058
Query: 247 EKNGIKMDL 255
+NG +D+
Sbjct: 1059 LQNGFVLDV 1067
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 37/200 (18%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H L F D Y S L ++ C SLE A +F +P+ NL+ WN++I
Sbjct: 1052 KEVHMYTLQNGFVLDVYIGSALVDMYSKCG-----SLERALLVFFNLPKKNLFCWNSIIE 1106
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
++ ++ +F ++ S PN T V A G+ ++ I
Sbjct: 1107 GLAAHGFAQEALKMFAKMEMESVK-PNAVTFVSVFTACTHA----------GLVDEGRRI 1155
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S+I Y++ +V + M+ F + G +A+EL ME E
Sbjct: 1156 YRSMIDDYSIV---------------SNVEHYGGMVHLFSKAGLIYEALELIGNMEFE-- 1198
Query: 217 KPDEVTMVVVLSACAKKRDL 236
P+ V +L C ++L
Sbjct: 1199 -PNAVIWGALLDGCRIHKNL 1217
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 118/218 (54%), Gaps = 8/218 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T ++ +R+HA M+ T + Y ++L + L AR++ D++P+ N+ +W
Sbjct: 491 TAIREGQRVHAHMIKTCYEPPVYLRTRLIV--LYNKCRCLGDARRVLDEMPERNVVSWTA 548
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+I YS ++ +F++++ S PNEFT V+ + F++G+ IH +
Sbjct: 549 MISGYSQRGYASEALHLFVEMLM-SGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKT 607
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
FE + + +SL+ YA G + A VF + ++DVVS ++ISG+ + G E+A++L+
Sbjct: 608 SFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLF 667
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
R ++ E ++ + VT VL+A + L+ G V SH+
Sbjct: 668 RRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHV 705
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 13/209 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH+ ++ T F + S L A + + AR++FD +P+ ++ + +I Y+
Sbjct: 598 RQIHSLVIKTSFESHIFVGSSLLDMYAKA--GKICEARRVFDGLPERDVVSCTAIISGYA 655
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDL---- 154
++ +F +L N T V+ A + G+ +H + L
Sbjct: 656 QLGLDEEALDLFRRL-QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYV 714
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ NSLI Y+ CG L + +F + ++ V+SWN+M+ G+ + G +A+EL++ M+ E
Sbjct: 715 VLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEE 774
Query: 215 N-VKPDEVTMVVVLSACA----KKRDLEF 238
N VKPD VT + VLS C+ + R LE
Sbjct: 775 NKVKPDSVTFLAVLSGCSHGGMEDRGLEI 803
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 130 VIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ R GQ +H +E + + LI Y C L A V + +++
Sbjct: 483 VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 542
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VVSW +MISG+ + G+ +A+ L+ EM + P+E T VL++C + G + S
Sbjct: 543 VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHS 602
Query: 245 HIEK 248
+ K
Sbjct: 603 LVIK 606
>gi|115480209|ref|NP_001063698.1| Os09g0520300 [Oryza sativa Japonica Group]
gi|113631931|dbj|BAF25612.1| Os09g0520300 [Oryza sativa Japonica Group]
Length = 657
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + F +E A +F+ P+ N+ +W +I ++ + ++ F++++ P++F
Sbjct: 311 AHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYIQPDDF 370
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T V+ A A G+ +H G F L ++N+L+ YA CGD+ A VF I
Sbjct: 371 TFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDAI 430
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+KD+VSWN+M+ GF G ++A+E+Y M NV PDEVT +L+AC+ LE G
Sbjct: 431 HQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACSHSGLLEQG 489
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 18/195 (9%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A ++FD++P + WNTL+ +S S Q +F Q+ + S ++ TL ++
Sbjct: 206 MELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQM-WMSGLTCDDATLCILVD 264
Query: 133 AAARPVQFRVGQAIH----------------GMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
A A G AIH M NSLI +A G + A +
Sbjct: 265 ACAELPDPSTGFAIHKVVVQSGWNGIPEIFESMKTRTTASWNSLIDAHARFGYIEQAALL 324
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV-ENVKPDEVTMVVVLSACAKKRD 235
F + +++SW +MI GF +A+ + +M E ++PD+ T VL ACA
Sbjct: 325 FESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYIQPDDFTFGAVLHACASAPC 384
Query: 236 LEFGIWVSSHIEKNG 250
L G V S + G
Sbjct: 385 LASGRMVHSCAFQGG 399
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 51/92 (55%)
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
SL+H + V G + +A+ +F + K V+WN+++ G G ++ + L+ +M + +
Sbjct: 195 SLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTC 254
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
D+ T+ +++ ACA+ D G + + ++G
Sbjct: 255 DDATLCILVDACAELPDPSTGFAIHKVVVQSG 286
>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Brachypodium distachyon]
Length = 642
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 108/204 (52%), Gaps = 6/204 (2%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
L +HA ++ D + S L A L+ R +FD++ +L WN++I +
Sbjct: 190 LAAMHADIIKVGLDSDVFVRSSLID--AYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGF 247
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---MFEDDLV 155
+ S + + + +F+++ S + N+ TL V++A V VG+ +H ++ DL+
Sbjct: 248 AQSGDGVGAMELFMRM-KESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLKYDRDLI 306
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ N+L+ Y CG L A +F + +DV+SW++MISG + G +A++++ M+ E
Sbjct: 307 LHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEG 366
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG 239
P+ +TMV VL AC+ +E G
Sbjct: 367 PTPNNITMVGVLFACSHAGLVEDG 390
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 2/183 (1%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F L+ A ++F +PQ N+ +W T++ A +++ + + FL + N +T
Sbjct: 118 AKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTF 177
Query: 128 PFVIKAAARPVQFRVGQA--IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
V+ A P A I + D+ + +SLI Y GDL VF + D+
Sbjct: 178 SSVLGACGTPGVLAAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDL 237
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V WNS+I+GF + G A+EL+ M+ ++ T+ VL AC LE G V +H
Sbjct: 238 VVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAH 297
Query: 246 IEK 248
+ K
Sbjct: 298 VLK 300
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----------GMF 150
D P + + L + + + +L +IK R G+AIH G
Sbjct: 44 DGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGAT 103
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG-GFFEKAIELYR 209
L +SNSL+ YA G L A +F + +++VVSW ++++ G ++A+
Sbjct: 104 HGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLV 163
Query: 210 EMEVENVKPDEVTMVVVLSACA 231
EM + V + T VL AC
Sbjct: 164 EMRRDGVAANSYTFSSVLGACG 185
>gi|302797737|ref|XP_002980629.1| hypothetical protein SELMODRAFT_51574 [Selaginella moellendorffii]
gi|300151635|gb|EFJ18280.1| hypothetical protein SELMODRAFT_51574 [Selaginella moellendorffii]
Length = 499
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 17/234 (7%)
Query: 34 TNQKQLKR---IHAQMLSTDFFFDPYSASK---LFTPCALSTFSSLEYARKMFDQIPQPN 87
N K L+ IH +++S DP A ++ C S E A+ +F ++P P
Sbjct: 8 ANSKDLQAGILIHDRIVSRGLDRDPTIADHVVYMYVKCG-----SFETAKSVFQRMPDPG 62
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
+ +WN +I ++ E ++ F +L+ P T + A VG+ IH
Sbjct: 63 ILSWNRIIAGHAQRHELEEAIATFQKLLLQG-VTPGRITYVAALGACCGSRFLPVGKQIH 121
Query: 148 GM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
++ L++S +LI YA CG L A VF + ++DVV+W ++++ F + G E
Sbjct: 122 SQIVAAGWDSSLIVSTALIDMYAACGSLRGAIRVFQGMKRRDVVAWTAIVAAFAQYGHLE 181
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
KA + YR M +E P VT + +L+A A+++D + G W+ HI + ++ L+
Sbjct: 182 KAFQTYRGMLLEGFLPVLVTFLALLNALAEEKDWDRGRWIHRHITEMKLESQLS 235
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 97/183 (53%), Gaps = 10/183 (5%)
Query: 59 SKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
S+L AL T L+ AR++F +I QP+L +N L+ A++ + E + ++F ++
Sbjct: 232 SQLSVAAALITMFGKCGDLKKARRVFRRIHQPDLEVYNALLAAHTENGEFWNALLLFRRM 291
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGD 169
+ P+ T+ + A RPV G+ IH E D+ ++N+LI+ Y+ CG
Sbjct: 292 QEDG-VAPDRETVLAALGACIRPVDLEHGKGIHVSVINHDLEKDIDVANALIYMYSKCGS 350
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L A +F + + +VSW ++++ +V+ G E+A+ +R+M +E + P V L A
Sbjct: 351 LEDAEWMFQRVERPSMVSWRTLLAAYVKHGRNEEALSSFRKMLLEGISPGRSACVSALRA 410
Query: 230 CAK 232
C +
Sbjct: 411 CGR 413
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 16/209 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLI 95
K+IH+Q+++ + S L AL + SL A ++F + + ++ W ++
Sbjct: 118 KQIHSQIVAAGW------DSSLIVSTALIDMYAACGSLRGAIRVFQGMKRRDVVAWTAIV 171
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MF 150
A++ ++F + ++ + P T ++ A A + G+ IH
Sbjct: 172 AAFAQYGHLEKAFQTYRGMLLEG-FLPVLVTFLALLNALAEEKDWDRGRWIHRHITEMKL 230
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E L ++ +LI + CGDL A VF I + D+ +N++++ E G F A+ L+R
Sbjct: 231 ESQLSVAAALITMFGKCGDLKKARRVFRRIHQPDLEVYNALLAAHTENGEFWNALLLFRR 290
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFG 239
M+ + V PD T++ L AC + DLE G
Sbjct: 291 MQEDGVAPDRETVLAALGACIRPVDLEHG 319
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 14/186 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K IH +++ D D A+ L ++ C SLE A MF ++ +P++ +W TL+
Sbjct: 320 KGIHVSVINHDLEKDIDVANALIYMYSKCG-----SLEDAEWMFQRVERPSMVSWRTLLA 374
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
AY ++ F +++ P ++A R G+ IH + ++ +
Sbjct: 375 AYVKHGRNEEALSSFRKMLLEG-ISPGRSACVSALRACGRLGLPGQGRHIHLIVQELGLE 433
Query: 157 SN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
S+ +++ Y C L A VF I + ++ SWNS+++ ++E G E+A+ +R M
Sbjct: 434 SHNRVVYAVVEMYGKCKCLEDARRVFEKIEQPNLSSWNSIVAAYLECGCMEEALGQFRRM 493
Query: 212 EVENVK 217
++E VK
Sbjct: 494 QLEGVK 499
>gi|52076160|dbj|BAD46673.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 678
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + F +E A +F+ P+ N+ +W +I ++ + ++ F++++ P++F
Sbjct: 331 AHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYIQPDDF 390
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T V+ A A G+ +H G F L ++N+L+ YA CGD+ A VF I
Sbjct: 391 TFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDAI 450
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+KD+VSWN+M+ GF G ++A+E+Y M NV PDEVT +L+AC+ LE G
Sbjct: 451 HQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACSHSGLLEQG 509
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 38/215 (17%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A ++FD++P + WNTL+ +S S Q +F Q+ + S ++ TL ++
Sbjct: 206 MELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQM-WMSGLTCDDATLCILVD 264
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G AIH + + ++NSLI FY L A +F + + S
Sbjct: 265 ACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIFESMKTRTTAS 324
Query: 188 WNSMISGFVEGGFFEKAIELY--------------------------------REMEVEN 215
WNS+I G+ E+A L+ + + E
Sbjct: 325 WNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEY 384
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
++PD+ T VL ACA L G V S + G
Sbjct: 385 IQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGG 419
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 51/92 (55%)
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
SL+H + V G + +A+ +F + K V+WN+++ G G ++ + L+ +M + +
Sbjct: 195 SLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTC 254
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
D+ T+ +++ ACA+ D G + + ++G
Sbjct: 255 DDATLCILVDACAELPDPSTGFAIHKVVVQSG 286
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 108/216 (50%), Gaps = 8/216 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH Q+L T F F+ Y +S L A L++A K+F ++ + ++ +W +I Y+
Sbjct: 458 EQIHTQVLKTGFQFNVYVSSVLIDMYA--KHGKLDHALKIFRRLKENDVVSWTAMIAGYT 515
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
D+ ++ +F ++ + + I A A G+ IH + DDL
Sbjct: 516 QHDKFTEALNLFKEM-QDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDL 574
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I N+L+ YA CG + AY F I KD VSWNS++SGF + G+FE+A+ ++ +M
Sbjct: 575 SIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKA 634
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
++ + T +SA A ++ G + I K G
Sbjct: 635 GLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTG 670
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 21/208 (10%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q ++IHAQ + + D + L + A YA FDQI + +WN+L+
Sbjct: 557 QGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYA--AFDQIYAKDNVSWNSLVSG 614
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
++ S ++ IF Q+ + N FT + AAA R+G+ IHGM ++
Sbjct: 615 FAQSGYFEEALNIFAQM-NKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDS 673
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ +SN+LI YA CG + D +SWNSMI+G+ + G +A++L+ +M+
Sbjct: 674 ETEVSNALITLYAKCGTI-------------DDISWNSMITGYSQHGCGFEALKLFEDMK 720
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGI 240
+V P+ VT V VLSAC+ ++ GI
Sbjct: 721 QLDVLPNHVTFVGVLSACSHVGLVDEGI 748
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 113/225 (50%), Gaps = 22/225 (9%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+++IHA+ +++ F + + L + F L A+K+F+ + + +W +I
Sbjct: 183 VEQIHAKTITSGFESSTFICNPLIDLYFKNGF--LSSAKKVFENLKARDSVSWVAMISGL 240
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
S + ++ ++F Q+V + A + F G+ +HG+ F +
Sbjct: 241 SQNGYEEEAMLLFCQIV---------------LSACTKVEFFEFGKQLHGLVLKQGFSSE 285
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ N+L+ Y+ G+L+ A +F + ++D VS+NS+ISG + G+ +A+ L+++M +
Sbjct: 286 TYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNL 345
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ KPD VT+ +LSACA L G S+ K G+ D+ E
Sbjct: 346 DCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVE 390
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 6/179 (3%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+ ++ T + Y D +SF IF Q+ PN+FT P ++K +
Sbjct: 398 VKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEG-IVPNQFTYPSILKTCTTLGATDL 456
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ IH F+ ++ +S+ LI YA G L A +F + + DVVSW +MI+G+ +
Sbjct: 457 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQ 516
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
F +A+ L++EM+ + +K D + +SACA + L+ G + + +G DL+
Sbjct: 517 HDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLS 575
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
F L A +FD++P +L WN + + + + +F +++ + F
Sbjct: 109 AFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAV 168
Query: 129 FVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
+ + V FR + IH FE I N LI Y G L+ A VF + +
Sbjct: 169 VLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKAR 228
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
D VSW +MISG + G+ E+A+ L+ + +VLSAC K EFG +
Sbjct: 229 DSVSWVAMISGLSQNGYEEEAMLLFCQ--------------IVLSACTKVEFFEFGKQLH 274
Query: 244 SHIEKNG 250
+ K G
Sbjct: 275 GLVLKQG 281
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 23/221 (10%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H +L F + Y + L T + S +L A ++F + Q + ++N+LI +
Sbjct: 271 KQLHGLVLKQGFSSETYVCNALVTLYSRS--GNLSSAEQIFHCMSQRDRVSYNSLISGLA 328
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ-----AIHGMFEDDL 154
++ +F ++ + P+ T+ ++ A A G+ AI D+
Sbjct: 329 QQGYINRALALFKKMNLDCQK-PDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDI 387
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ SL+ Y C D+ A+ F+ G+ D ++ K+ +++ +M++E
Sbjct: 388 VVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLN---------------KSFQIFTQMQIE 432
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ P++ T +L C + G + + + K G + ++
Sbjct: 433 GIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNV 473
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%)
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
LI FY GDL A VF + + + WN + + F+ + L+R M +NV+ D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162
Query: 220 EVTMVVVLSACA 231
E VVL C+
Sbjct: 163 ERIFAVVLRGCS 174
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 113/205 (55%), Gaps = 6/205 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
L+++H ++ T D + S L S +S L+ A +FD++P +L WN++I
Sbjct: 170 NLRQLHCGIIKTGLESDVFVRSALID--VYSKWSDLDNALGVFDEMPTRDLVVWNSIIGG 227
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---MFEDDL 154
++ + + ++ +F ++ + + ++ TL V++A +G+ +H F+ DL
Sbjct: 228 FAQNSDGNEALNLFKRM-KRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDL 286
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+++N+LI Y CG L A F + +KDV+SW++M++G + G+ +A+EL+ M+
Sbjct: 287 ILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKES 346
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
+P+ +T++ VL AC+ +E G
Sbjct: 347 GSRPNYITVLGVLFACSHAGLVEKG 371
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 8/183 (4%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSS--SDEPIQSFMIFLQLVYNSPYFPNEFTL 127
F+ LE A +FD++P+ N+ +W T+I AYS+ +D+ ++ + L++ PN FT
Sbjct: 103 FNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLI----LMFREGVRPNMFTY 158
Query: 128 PFVIKAAARPVQFRVGQA--IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
V++A R I E D+ + ++LI Y+ DL A VF + +D+
Sbjct: 159 SSVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDL 218
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V WNS+I GF + +A+ L++ M+ D+ T+ VL AC LE G V H
Sbjct: 219 VVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVH 278
Query: 246 IEK 248
+ K
Sbjct: 279 VLK 281
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 29/176 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SLE A F ++ + ++ +W+T++ + + Q+ +F + + S PN T+ V
Sbjct: 300 GSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELF-ESMKESGSRPNYITVLGV 358
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + G+ E S+ + V C+ ++G+
Sbjct: 359 LFACSHA----------GLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGR-------- 400
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G ++A++L EME E PD VT +L AC R+++ I+ + I
Sbjct: 401 -------AGRLDEAVKLIHEMECE---PDSVTWRTLLGACRVHRNVDLAIYAAKKI 446
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYC 175
F + T +IK + + G+ +H +E + + N+L++ Y L A
Sbjct: 52 FADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAED 111
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+F + +++VVSW +MIS + +KA++ M E V+P+ T VL AC
Sbjct: 112 LFDEMPERNVVSWTTMISAY-SNKLNDKALKCLILMFREGVRPNMFTYSSVLRAC 165
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 118/218 (54%), Gaps = 8/218 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T ++ +R+HA M+ T + Y ++L + L AR++ D++P+ N+ +W
Sbjct: 24 TAIREGQRVHAHMIKTCYEPPVYLRTRLIV--LYNKCRCLGDARRVLDEMPERNVVSWTA 81
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+I YS ++ +F++++ S PNEFT V+ + F++G+ IH +
Sbjct: 82 MISGYSQRGYASEALHLFVEMLM-SGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKT 140
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
FE + + +SL+ YA G + A VF + ++DVVS ++ISG+ + G E+A++L+
Sbjct: 141 SFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLF 200
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
R ++ E ++ + VT VL+A + L+ G V SH+
Sbjct: 201 RRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHV 238
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 101/198 (51%), Gaps = 9/198 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH+ ++ T F + S L A + + AR++FD +P+ ++ + +I Y+
Sbjct: 131 RQIHSLVIKTSFESHIFVGSSLLDMYAKA--GKICEARRVFDGLPERDVVSCTAIISGYA 188
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDL---- 154
++ +F +L N T V+ A + G+ +H + L
Sbjct: 189 QLGLDEEALDLFRRL-QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYV 247
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ NSLI Y+ CG L + +F + ++ V+SWN+M+ G+ + G +A+EL++ M+ E
Sbjct: 248 VLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEE 307
Query: 215 N-VKPDEVTMVVVLSACA 231
N VKPD VT + VLS C+
Sbjct: 308 NKVKPDSVTFLAVLSGCS 325
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 140 FRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
R GQ +H +E + + LI Y C L A V + +++VVSW +MISG
Sbjct: 26 IREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISG 85
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+ + G+ +A+ L+ EM + P+E T VL++C + G + S + K
Sbjct: 86 YSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIK 139
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N K++HA +L + ++KL T + +R FD I + N+++WN++
Sbjct: 34 NVNATKKLHALLLVFGKSQNIVLSTKLIN--LYVTHGDISLSRSTFDYIHKKNIFSWNSI 91
Query: 95 IRAY---SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
I AY E + + P+ +T P ++KA V G+ +H
Sbjct: 92 ISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVF 148
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
FEDD+ ++ SL+H Y+ G L +A+ VFV + KDV SWN+MISGF + G A+
Sbjct: 149 KMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALG 208
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ M+ E VK D +T+ +L CA+ D+ G+ + H+ K+G+ D+
Sbjct: 209 VLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDV 257
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 116/223 (52%), Gaps = 14/223 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH +L D + ++ L S F L+ A+ +FDQ+ +L +WN++I AY +
Sbjct: 244 IHLHVLKHGLDSDVFVSNALIN--MYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301
Query: 102 DEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FEDD 153
++P + F +QL P+ T+ + ++ R+ ++I G + D
Sbjct: 302 NDPSTALRFFKGMQL---GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKD 358
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-E 212
+VI N+L++ YA G + A+ VF + +KD +SWN++++G+ + G +AI+ Y M E
Sbjct: 359 VVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEE 418
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ P++ T V ++ A + L+ G+ + + + KN + +D+
Sbjct: 419 CRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDV 461
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +FDQ+P+ + +WNTL+ Y+ + ++ + + PN+ T +I A +
Sbjct: 378 AHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYS 437
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G IH D+ ++ LI Y CG L A +F I + V WN+
Sbjct: 438 HVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNA 497
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+I+ G E+A++L+++M E VK D +T V +LSAC+
Sbjct: 498 IIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACS 538
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 84/216 (38%), Gaps = 43/216 (19%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q +IHA+++ + D + A+ L+ C LE A +F +IP+ WN
Sbjct: 443 QQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCG-----RLEDAMSLFYEIPRDTSVPWNA 497
Query: 94 LIRA---YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
+I + + +E +Q F L + + T ++ A + GQ +
Sbjct: 498 IIASLGIHGRGEEALQLFKDMLAERVKA----DHITFVSLLSACSHSGLVDEGQKCFDIM 553
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ + I SL H+ C+ ++G+ G+ EKA EL R
Sbjct: 554 QKEYGIKPSLKHY----------GCMVDLLGR---------------AGYLEKAYELVRN 588
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
M ++ PD +LSAC + E G S +
Sbjct: 589 MPIQ---PDASIWGALLSACKIYGNAELGTLASDRL 621
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 121/281 (43%), Gaps = 67/281 (23%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ +K+I A + T P + KL CA++ SL YAR++F I P+++ +NTLIR
Sbjct: 19 RTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVFMYNTLIR 78
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
S SD P + +F+++ S P+ F+ F++KAAA G +H + +
Sbjct: 79 GLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLD 138
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVF-VMI------------------GKKD-------- 184
L + +LI YA C L A VF MI G KD
Sbjct: 139 SHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCM 198
Query: 185 ----VVSWNSMISGFVEGG-------------------------------FFEKAIELYR 209
+ SWN M++G+ + G F A +R
Sbjct: 199 PIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFR 258
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
E+ E ++P+EV++ VLSACA+ EFG + +EK+G
Sbjct: 259 EVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSG 299
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 103/186 (55%), Gaps = 7/186 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ AR++F ++P + +W+T+I ++ + +F F + V PNE +L V+
Sbjct: 219 LQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFRE-VRREGMRPNEVSLTGVLS 277
Query: 133 AAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A+ F G+ +HG E + ++N+LI Y+ CG+L MA VF + ++ VS
Sbjct: 278 ACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVS 337
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI-WVSSHI 246
W +MI+G G+ E+AI L+ EME N+KPD +T + +L AC+ ++ G + S +
Sbjct: 338 WTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMV 397
Query: 247 EKNGIK 252
GI+
Sbjct: 398 NTYGIE 403
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 111/208 (53%), Gaps = 12/208 (5%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q+K++HA M+ F DP + +L A++ ++ +A +FDQIP+P+L+ +NTLIR
Sbjct: 22 RQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFMYNTLIR 81
Query: 97 AYSSSDEPIQSFMIFLQLVYNSP---YFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--- 150
+ + P + ++ ++ P++ T PFV++A G +H
Sbjct: 82 GAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVVKA 141
Query: 151 --EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
E D + N+LI +A CG+L +A +F ++D V+W++MI+G G A +L+
Sbjct: 142 GCESDAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAARKLF 201
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDL 236
E V+ D V+ V+++A AK+ ++
Sbjct: 202 DECPVK----DHVSWNVMITAYAKRGEM 225
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 21/198 (10%)
Query: 54 DPYSASKLFTPC-------------ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
D +A KLF C A + + AR +F++IP+ ++ +WN +I +
Sbjct: 193 DIVAARKLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVR 252
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-------D 153
+ + +F Q+ P+ T+ ++ A A VG+ +H +
Sbjct: 253 CGSHVYAMELFEQM-QRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFT 311
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+++ N+LI YA CG + A VF ++ KDV +WNS+I G G ++I+++++M
Sbjct: 312 VILGNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLK 371
Query: 214 ENVKPDEVTMVVVLSACA 231
E V+PDE+T V VL AC+
Sbjct: 372 EKVRPDEITFVAVLIACS 389
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 55/87 (63%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D V N +I YA G++A A +F I ++DVVSWN+MISG V G A+EL+ +M+
Sbjct: 208 DHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQMQ 267
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFG 239
KPD VTM+ +LSACA D++ G
Sbjct: 268 RMGQKPDVVTMLSLLSACADSGDIDVG 294
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY----REMEVENVKPDE 220
AV G +A AY VF I + D+ +N++I G A+ LY R V+PD+
Sbjct: 53 AVRGAIAHAYLVFDQIPRPDLFMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDK 112
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+T VL AC G V +H+ K G + D
Sbjct: 113 ITFPFVLRACTAMGAGGTGAQVHAHVVKAGCESD 146
>gi|302796685|ref|XP_002980104.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
gi|300152331|gb|EFJ18974.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
Length = 623
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 17/232 (7%)
Query: 35 NQKQL---KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNL 88
N K L +R+H+QM+S D Y + +++ C SL+ AR F I Q N+
Sbjct: 14 NSKSLADGRRVHSQMISNGLDGDTYLGNLLVQMYGRCG-----SLDDARAAFRGIHQRNV 68
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
++W LI + E + + L+ + N+ T ++ A + +G+ IH
Sbjct: 69 FSWTILISLLVQNGEASEGLEL-LKFMDLEGTEANKITFISLLGACSVTGDLSLGKKIHE 127
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
E D++ N+L++ Y C L A VF + +DVVSW +IS + G+ +
Sbjct: 128 RVRAKGLETDIITGNALLNMYTTCDSLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLE 187
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
A++LYR ME E +PD VT++ VL ACA R L G + I +G++ D+
Sbjct: 188 ALQLYRRMEQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVASGVETDV 239
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 16/224 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+RI A + TD F S + C +++ AR++FD+I ++ WN +I AY+
Sbjct: 228 ERIVASGVETDVFVGTAVVS-FYGKC-----EAVDDARQVFDRIMDKDIVCWNAMIGAYA 281
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDD 153
+ ++F ++L++V N PN+ TL ++ + + + G ++H G
Sbjct: 282 QNHCEEKAFALYLEMVEN-QMRPNDVTLITLLDSCSSTCKMERGSSLHREAAARGYLSHT 340
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKK--DVVSWNSMISGFVEGGFFEKAIELYREM 211
V+ N+LI+ YA CG L A VF+ + +V++WN+MI + +A+++Y M
Sbjct: 341 SVV-NALINMYAKCGSLENATRVFIEATNRTTNVITWNTMIVANAQEDLNLEALQIYHRM 399
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E +K +VT VL+ CA D G V S G D+
Sbjct: 400 NQEGIKASDVTYGTVLAVCANFGDFTTGREVHSRSLATGCCSDV 443
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 106/210 (50%), Gaps = 12/210 (5%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
+K +R+ A+ L TD + ++T C SL+ AR +F+++ ++ +W +
Sbjct: 122 GKKIHERVRAKGLETDIITGN-ALLNMYTTC-----DSLDEARLVFERMVFRDVVSWTII 175
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GM 149
I AY+ + P+++ ++ ++ P+ TL V++A A G+ IH
Sbjct: 176 ISAYAHAGYPLEALQLYRRMEQEFSR-PDAVTLISVLEACASLRTLVEGKTIHERIVASG 234
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
E D+ + +++ FY C + A VF I KD+V WN+MI + + EKA LY
Sbjct: 235 VETDVFVGTAVVSFYGKCEAVDDARQVFDRIMDKDIVCWNAMIGAYAQNHCEEKAFALYL 294
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
EM ++P++VT++ +L +C+ +E G
Sbjct: 295 EMVENQMRPNDVTLITLLDSCSSTCKMERG 324
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 71 SSLEYARKMFDQIPQ--PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
SLE A ++F + N+ TWNT+I A + D +++ I+ ++ ++ T
Sbjct: 354 GSLENATRVFIEATNRTTNVITWNTMIVANAQEDLNLEALQIYHRM-NQEGIKASDVTYG 412
Query: 129 FVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A F G+ +H G D V+ NSLI Y CG+L A F +
Sbjct: 413 TVLAVCANFGDFTTGREVHSRSLATGCCSD--VVQNSLICLYGGCGNLEAAQTAFESVAS 470
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
K+VVSW+S+++ + G ++A L+ M + V P+ VT VL AC+
Sbjct: 471 KNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACS 519
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 122/269 (45%), Gaps = 52/269 (19%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T L+++HA+++ D + S+ T C ++ S+ Y +F+ + P+ WNT
Sbjct: 84 TTTSTLEQVHARIIRKGLHQDHFIISQFLTLC--NSLSNFSYTTSVFNGVSSPSTVLWNT 141
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
I+ YS + + +F+++ S P++FT P +IKA ++ + G A HG
Sbjct: 142 YIKGYSENYSVSLTVSLFIRM-KRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRC 200
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM----------------- 191
D+ + SLI Y CG++ A VF +G+++VVSW +M
Sbjct: 201 GVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLF 260
Query: 192 --------------ISGFVEGGFFEKAIELYREME-------------VENVKPDEVTMV 224
ISG+V+ G A +++ EM NVKPDE MV
Sbjct: 261 DEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMV 320
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
++SAC++ LE WV ++ K+ I +
Sbjct: 321 SLMSACSQMGSLELAKWVDDYVRKSSIDV 349
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 28/197 (14%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL------------V 115
++FS L ARK+FD++P+ N +WN +I Y + + +F ++ +
Sbjct: 248 ASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSAL 307
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS-----------LIHFY 164
+ P+EF + ++ A ++ + + + DD V +S LI
Sbjct: 308 ISGNVKPDEFIMVSLMSACSQMGSLELAKWV-----DDYVRKSSIDVHRAHVIAALIDMN 362
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
A CG + A +F + K+D++S+ SM+ G G +A+ L+ M E + PD+V
Sbjct: 363 AKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFT 422
Query: 225 VVLSACAKKRDLEFGIW 241
V+L+AC++ ++ G +
Sbjct: 423 VILTACSRAGLVDEGCY 439
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 148 GMFEDDLVISNSLIHFYAVCGDLA---MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
G+ +D +IS F +C L+ VF + V WN+ I G+ E
Sbjct: 100 GLHQDHFIIS----QFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLT 155
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ L+ M+ + PD+ T ++ AC+K ++ G+ + G+ D+
Sbjct: 156 VSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDV 206
>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
Length = 956
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYT 90
N + + ++H+Q+ T D + A+KL + CA SL+ ARK+FD+ P PN++
Sbjct: 15 NNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCA-----SLQAARKVFDETPHPNVHL 69
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
WN+ +R+Y + ++ +F ++ + P+ FT+P +KA A +G+ IHG
Sbjct: 70 WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFA 129
Query: 151 E------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ D+ + ++L+ Y+ CG + A VF + D V W SM++G+ + E+A
Sbjct: 130 KKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEA 189
Query: 205 IELYREM 211
+ L+ +M
Sbjct: 190 LALFSQM 196
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 13/194 (6%)
Query: 59 SKLFTPCALS--TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
S++ T A+ +F+ ++ A +F+ IP P + WN +IR +++ + S ++ +++
Sbjct: 511 SRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMME 570
Query: 117 ------NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA 165
NS PN ++ V+ A R G+ H FE D++++ +++ Y+
Sbjct: 571 KGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYS 630
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
CG L +A C+F KD+V W++MI+ + G KAI+L+ +M V+P VT
Sbjct: 631 KCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTC 690
Query: 226 VLSACAKKRDLEFG 239
VLSAC+ LE G
Sbjct: 691 VLSACSHSGLLEEG 704
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 34/186 (18%)
Query: 58 ASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
S +F AL S + A K+F++ +P+ W +++ Y +++P ++ +F Q
Sbjct: 136 GSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQ 195
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMA 173
+V + F+ DL + NSL++ YA G +A
Sbjct: 196 MV------------------------------MMDCFDGDLPLVNSLLNLYAKTGCEKIA 225
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+F + +KDV+SW++MI+ + +A+ L+ EM + +P+ VT+V L ACA
Sbjct: 226 ANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVS 285
Query: 234 RDLEFG 239
R+LE G
Sbjct: 286 RNLEEG 291
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 86/175 (49%), Gaps = 31/175 (17%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F ++P+ ++ +W+T+I Y++++ ++ +F +++ + PN T+ ++A A
Sbjct: 225 AANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMI-EKRFEPNSVTVVSALQACA 283
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
G+ IH + AV KDVVSW +++SG+
Sbjct: 284 VSRNLEEGKKIHKI---------------AVW---------------KDVVSWVALLSGY 313
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ G K++ ++R M + ++PD V +V +L+A ++ + + + ++ ++G
Sbjct: 314 AQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSG 368
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F+P S + + A + +LE +K+ ++ +W L+ Y+ + +S +F
Sbjct: 268 FEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFR 327
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVC 167
++ + P+ + ++ A++ F+ +HG F ++ + SLI Y+ C
Sbjct: 328 NMLSDGIQ-PDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKC 386
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
G L A +F + +DVV W+SMI+ + G +A+E++ +M
Sbjct: 387 GSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQM 430
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 103/270 (38%), Gaps = 56/270 (20%)
Query: 37 KQLKRIHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q +H ++ + F F S +L++ C SL A K+F + ++ W++
Sbjct: 355 QQALCLHGYVVRSGFNSNVFVGASLIELYSKCG-----SLGDAVKLFKGMIVRDVVIWSS 409
Query: 94 LIRAYSSSDEPIQSFMIFLQLV-----------------YNSPYFPNEFTL----PFVIK 132
+I AY ++ IF Q++ P TL P+ +K
Sbjct: 410 MIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVK 469
Query: 133 AAARPVQFRVGQAIHGMF------EDDLVISN----SLIHFYAVCGDLAMAYCVFVMIGK 182
A FR +F D+ SN L + + A+ Y F I
Sbjct: 470 AFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDA 529
Query: 183 KDVV----------SWNSMISGFVEGGFFEKAIELYREMEVENVKPD-------EVTMVV 225
+V WN MI GF G F ++ELY +M + +KPD V+++
Sbjct: 530 ASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILS 589
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
VL AC L G W S++ + G + D+
Sbjct: 590 VLLACGNLGALRKGEWFHSYVIQTGFEFDI 619
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM- 211
D + L YA C L A VF +V WNS + + +E+ + L+ M
Sbjct: 35 DTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMI 94
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
PD T+ + L ACA R LE G + +KN
Sbjct: 95 CTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKN 132
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 13/230 (5%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
N K++HA +L + ++KL T + +R FD I + N+++WN+
Sbjct: 33 VNVNATKKLHALLLVFGKSQNIVLSTKLIN--LYVTHGDISLSRSTFDYIHKKNIFSWNS 90
Query: 94 LIRAY---SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
+I AY E + + P+ +T P ++KA V G+ +H
Sbjct: 91 IISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCV 147
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
FEDD+ ++ SL+H Y+ G L +A+ VFV + KDV SWN+MISGF + G A+
Sbjct: 148 FKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGAL 207
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ M+ E VK D +T+ +L CA+ D+ G+ + H+ K+G+ D+
Sbjct: 208 GVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDV 257
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 116/223 (52%), Gaps = 14/223 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH +L D + ++ L S F L+ A+ +FDQ+ +L +WN++I AY +
Sbjct: 244 IHLHVLKHGLDSDVFVSNALIN--MYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301
Query: 102 DEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FEDD 153
++P + F +QL P+ T+ + ++ R+ ++I G + D
Sbjct: 302 NDPSTALRFFKGMQL---GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKD 358
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-E 212
+VI N+L++ YA G + A+ VF + +KD +SWN++++G+ + G +AI+ Y M E
Sbjct: 359 VVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEE 418
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ P++ T V ++ A + L+ G+ + + + KN + +D+
Sbjct: 419 CRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDV 461
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +FDQ+P+ + +WNTL+ Y+ + ++ + + PN+ T +I A +
Sbjct: 378 AHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYS 437
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G IH D+ ++ LI Y CG L A +F I + V WN+
Sbjct: 438 HVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNA 497
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+I+ G E+A++L+++M E VK D +T V +LSAC+
Sbjct: 498 IIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACS 538
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 84/216 (38%), Gaps = 43/216 (19%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q +IHA+++ + D + A+ L+ C LE A +F +IP+ WN
Sbjct: 443 QQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCG-----RLEDAMSLFYEIPRDTSVPWNA 497
Query: 94 LIRA---YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
+I + + +E +Q F L + + T ++ A + GQ +
Sbjct: 498 IIASLGIHGRGEEALQLFKDMLAERVKA----DHITFVSLLSACSHSGLVDEGQKCFDIM 553
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ + I SL H+ C+ ++G+ G+ EKA EL R
Sbjct: 554 QKEYGIKPSLKHY----------GCMVDLLGR---------------AGYLEKAYELVRN 588
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
M ++ PD +LSAC + E G S +
Sbjct: 589 MPIQ---PDASIWGALLSACKIYGNAELGTLASDRL 621
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 118/228 (51%), Gaps = 7/228 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + K +++HA +L ++F D + + L + + FS + A +F +I +L +W
Sbjct: 212 LDDFKLARQLHAHVLKSEFGADLIAQNALIS--MYTKFSQMADAINVFSRIIIKDLISWG 269
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
++I +S +++ F +++ S Y PNEF A ++ ++ G+ IHG+
Sbjct: 270 SMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIK 329
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
DL SL YA CG L A VF I K D+V+WN++I+GF +++
Sbjct: 330 FGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSF 389
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ +M + P++VT++ +L AC++ L GI V S+I K G +D+
Sbjct: 390 FSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDI 437
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 111/206 (53%), Gaps = 9/206 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP-QPNLYTWNTLIRAYS 99
++H+ ++ F D + L + S S+L A ++F+ I + ++ +WNTL+ A
Sbjct: 423 QVHSYIVKMGFNLDIPVCNSLLS--MYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACL 480
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
++ + + +L++ S P+ TL V+ ++ + + VG IH D+
Sbjct: 481 QQNQAGE-VLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDI 539
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+SN+LI+ Y CG L A +F IG D++SW+S+I G+ + G ++A EL+R M
Sbjct: 540 SVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGL 599
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGI 240
VKP+E+T V +L+AC+ +E G+
Sbjct: 600 GVKPNEITFVGILTACSHIGMVEEGL 625
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 11/209 (5%)
Query: 58 ASKLFTPCALSTFSS----LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
S LF C+L + LE AR +F I +P+L WN +I ++S +S F Q
Sbjct: 333 GSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQ 392
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG 168
+ + + PN+ T+ ++ A + PV G +H F D+ + NSL+ Y+ C
Sbjct: 393 MRH-TGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCS 451
Query: 169 DLAMAYCVFVMIGKK-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
+L A VF IG K D+VSWN++++ ++ + + L + M +KPD VT+ VL
Sbjct: 452 NLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVL 511
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ + E G + I K+G+ +D++
Sbjct: 512 VSSGQIASYEVGSQIHCFIMKSGLNLDIS 540
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 8/158 (5%)
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVIS 157
E +++F IF Q +SP T +I A + G+ IH ++ D+++
Sbjct: 80 EALKAFDIF-QKCSSSPL--KSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQ 136
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
N ++ Y CG L A +F + K+VVSW SMISG+ G + AI LY +M
Sbjct: 137 NHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHI 196
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
PD T ++ +C+ D + + +H+ K+ DL
Sbjct: 197 PDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADL 234
>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 116/248 (46%), Gaps = 38/248 (15%)
Query: 21 TVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL------- 73
++ G Q H HF+ ++ + L D Y+ +L CA + F S+
Sbjct: 57 SIKLGKQVHCHFIVSEYSNDDVVKSSL-----VDMYAKCRLLD-CAKAVFDSIRVKNTIS 110
Query: 74 --------------EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
E A ++F ++P NLY+W LI + S + +++F +F ++
Sbjct: 111 WTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERV 170
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAY 174
+ L ++ A A G+ +HG+ F+ + ISN+LI YA C D+ A
Sbjct: 171 DILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAK 230
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC---- 230
+F + +DVVSW S+I G + G EKA+ LY EM VKP+EVT V ++ AC
Sbjct: 231 DIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVG 290
Query: 231 --AKKRDL 236
AK R+L
Sbjct: 291 FVAKGREL 298
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 118/228 (51%), Gaps = 7/228 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + K +++HA +L ++F D + + L + + FS + A +F +I +L +W
Sbjct: 212 LDDFKLARQLHAHVLKSEFGADLIAQNALIS--MYTKFSQMADAINVFSRIIIKDLISWG 269
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
++I +S +++ F +++ S Y PNEF A ++ ++ G+ IHG+
Sbjct: 270 SMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIK 329
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
DL SL YA CG L A VF I K D+V+WN++I+GF +++
Sbjct: 330 FGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSF 389
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ +M + P++VT++ +L AC++ L GI V S+I K G +D+
Sbjct: 390 FSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDI 437
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 111/206 (53%), Gaps = 9/206 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP-QPNLYTWNTLIRAYS 99
++H+ ++ F D + L + S S+L A ++F+ I + ++ +WNTL+ A
Sbjct: 423 QVHSYIVKMGFNLDIPVCNSLLS--MYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACL 480
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
++ + + +L++ S P+ TL V+ ++ + + VG IH D+
Sbjct: 481 QQNQAGE-VLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDI 539
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+SN+LI+ Y CG L A +F IG D++SW+S+I G+ + G ++A EL+R M
Sbjct: 540 SVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGL 599
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGI 240
VKP+E+T V +L+AC+ +E G+
Sbjct: 600 GVKPNEITFVGILTACSHIGMVEEGL 625
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 11/209 (5%)
Query: 58 ASKLFTPCALSTFSS----LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
S LF C+L + LE AR +F I +P+L WN +I ++S +S F Q
Sbjct: 333 GSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQ 392
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG 168
+ + + PN+ T+ ++ A + PV G +H F D+ + NSL+ Y+ C
Sbjct: 393 MRH-TGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCS 451
Query: 169 DLAMAYCVFVMIGKK-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
+L A VF IG K D+VSWN++++ ++ + + L + M +KPD VT+ VL
Sbjct: 452 NLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVL 511
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ + E G + I K+G+ +D++
Sbjct: 512 VSSGQIASYEVGSQIHCFIMKSGLNLDIS 540
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 8/158 (5%)
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVIS 157
E +++F IF Q +SP T +I A + G+ IH ++ D+++
Sbjct: 80 EALKAFDIF-QKCSSSPL--KSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQ 136
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
N ++ Y CG L A +F + K+VVSW SMISG+ G + AI LY +M
Sbjct: 137 NHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHI 196
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
PD T ++ +C+ D + + +H+ K+ DL
Sbjct: 197 PDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADL 234
>gi|125606358|gb|EAZ45394.1| hypothetical protein OsJ_30043 [Oryza sativa Japonica Group]
Length = 494
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + F +E A +F+ P+ N+ +W +I ++ + ++ F++++ P++F
Sbjct: 147 AHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYIQPDDF 206
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T V+ A A G+ +H G F L ++N+L+ YA CGD+ A VF I
Sbjct: 207 TFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDAI 266
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+KD+VSWN+M+ GF G ++A+E+Y M NV PDEVT +L+AC+ LE G
Sbjct: 267 HQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACSHSGLLEQG 325
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 38/215 (17%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A ++FD++P + WNTL+ +S S Q +F Q+ + S ++ TL ++
Sbjct: 22 MELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQM-WMSGLTCDDATLCILVD 80
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G AIH + + ++NSLI FY L A +F + + S
Sbjct: 81 ACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIFESMKTRTTAS 140
Query: 188 WNSMISGFVEGGFFEKAIELY--------------------------------REMEVEN 215
WNS+I G+ E+A L+ + + E
Sbjct: 141 WNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEY 200
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
++PD+ T VL ACA L G V S + G
Sbjct: 201 IQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGG 235
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 51/92 (55%)
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
SL+H + V G + +A+ +F + K V+WN+++ G G ++ + L+ +M + +
Sbjct: 11 SLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTC 70
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
D+ T+ +++ ACA+ D G + + ++G
Sbjct: 71 DDATLCILVDACAELPDPSTGFAIHKVVVQSG 102
>gi|383173444|gb|AFG70126.1| Pinus taeda anonymous locus 0_11486_01 genomic sequence
Length = 142
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 89/139 (64%), Gaps = 5/139 (3%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ FT PFVIKA A + G+AIH F+ D+ ++NSL+ Y+ CG + +A V
Sbjct: 2 PDNFTFPFVIKACAGLSALQEGKAIHDHIVRTGFQWDVFVANSLVTLYSQCGSVDVARHV 61
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + ++D+VSWN+MI G+ + + ++A+ L+R+M++ VKPD VT+V VLSAC K L
Sbjct: 62 FDKMPERDLVSWNAMIDGYAQNDYGDQALMLFRQMQMAGVKPDPVTIVNVLSACIKIAGL 121
Query: 237 EFGIWVSSHIEKNGIKMDL 255
+W+ S I ++G + D+
Sbjct: 122 CERMWIHSCIIRSGFEADV 140
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+ ++ K IH ++ T F +D + A+ L T S S++ AR +FD++P+ +L +WN
Sbjct: 17 LSALQEGKAIHDHIVRTGFQWDVFVANSLVT--LYSQCGSVDVARHVFDKMPERDLVSWN 74
Query: 93 TLIRAYSSSDEPIQSFMIFLQL 114
+I Y+ +D Q+ M+F Q+
Sbjct: 75 AMIDGYAQNDYGDQALMLFRQM 96
>gi|356518950|ref|XP_003528138.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g64310-like [Glycine max]
Length = 551
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 14/225 (6%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
L+R+H ++ DP S L A S + AR++FD I +P+L WN+LI Y
Sbjct: 123 LRRVHGGAVAAGLGRDPVCCSALVA--AYSKLGLVHEARRVFDGIAEPDLVLWNSLISGY 180
Query: 99 SS---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
D +Q F + P+ +TL ++ A +GQ +H +
Sbjct: 181 GGFGLWDVGMQMFSMMRLFGMK----PDGYTLAGLLVGIADSGMLSIGQGLHCLSQKSGL 236
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ D + + L+ Y+ C +A AY VF I D+V+W+++I G+ + G +EK + +R+
Sbjct: 237 DSDSHVGSLLLSMYSRCKHMASAYRVFCSILNPDLVTWSALIVGYSQSGEYEKVLLFFRK 296
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ +E+ KPD V + VL++ A+ ++ G V + ++G+++D+
Sbjct: 297 LNMESKKPDSVLIASVLASIAQMANVGLGCEVHGYALRHGLELDV 341
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 8/220 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++HA +L T DP+ A+K+ A + + + A +FD+ P ++Y WN++IRA++
Sbjct: 23 KQLHAFLLKTHLSQDPFYATKIVRLYAAN--NDINSAHHLFDKTPNRSVYLWNSMIRAFA 80
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDL 154
S + +F ++ + P+ T VI+A A F + + +HG D
Sbjct: 81 QSQRFFNAISLFRTML-GADISPDGHTYACVIRACANNFDFGMLRRVHGGAVAAGLGRDP 139
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V ++L+ Y+ G + A VF I + D+V WNS+ISG+ G ++ ++++ M +
Sbjct: 140 VCCSALVAAYSKLGLVHEARRVFDGIAEPDLVLWNSLISGYGGFGLWDVGMQMFSMMRLF 199
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+KPD T+ +L A L G + +K+G+ D
Sbjct: 200 GMKPDGYTLAGLLVGIADSGMLSIGQGLHCLSQKSGLDSD 239
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 9/173 (5%)
Query: 67 LSTFSSLEY---ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
LS +S ++ A ++F I P+L TW+ LI YS S E + + F +L S P+
Sbjct: 247 LSMYSRCKHMASAYRVFCSILNPDLVTWSALIVGYSQSGEYEKVLLFFRKLNMESKK-PD 305
Query: 124 EFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFV 178
+ V+ + A+ +G +HG E D+ +S++L+ Y+ CG L + CVF
Sbjct: 306 SVLIASVLASIAQMANVGLGCEVHGYALRHGLELDVRVSSALVDMYSKCGFLHLGICVFR 365
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++ ++++VS+NS+I GF G +A ++ +M + + PDE T +L AC
Sbjct: 366 VMPERNIVSFNSVILGFGLHGCASEAFRMFDKMLEKGLVPDEATFSSLLCACC 418
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 120/254 (47%), Gaps = 15/254 (5%)
Query: 9 ISIPRHPNPTTLTVNNGHQRHPHFL-----TNQKQLKRIHAQMLSTDFFFDPYSASKLFT 63
+++P + ++L N P FL TN L++ H + D A+KL +
Sbjct: 40 LNLPEDNDESSL---NYAASRPCFLLLSKCTNIDSLRQAHGVLTGNGLMGDISIATKLVS 96
Query: 64 PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
+F + AR +FDQIP+P+ Y W ++R Y ++E + + F L+ + +
Sbjct: 97 --LYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESFE-VIKFYDLLMKHGFGYD 153
Query: 124 EFTLPFVIKAAARPVQFRVGQAIHGMFED----DLVISNSLIHFYAVCGDLAMAYCVFVM 179
+ +KA G+ IH D V+ L+ YA CG++ +Y VF
Sbjct: 154 DIVFSKALKACTEVQDLDNGKKIHCQIVKVPSFDNVVLTGLLDMYAKCGEIKSSYKVFED 213
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
I ++VV W SMI+G+V+ +E+ + L+ M +V +E T ++ AC K R L G
Sbjct: 214 ITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQG 273
Query: 240 IWVSSHIEKNGIKM 253
W + K+GI++
Sbjct: 274 KWFHGCLIKSGIEL 287
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 5/168 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++F++ +L W +I Y+ + ++ +F Q + PN T+ V+
Sbjct: 308 ARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLF-QKMSGVGIKPNCVTIASVLSGCG 366
Query: 136 RPVQFRVGQAIHGMFED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
+G++IHG+ D ++N+L+H YA C A VF M +KD+V+WNS+
Sbjct: 367 LVGNLELGRSIHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSI 426
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
ISGF + G +A+ L+ M E+V P+ VT+ + SACA L G
Sbjct: 427 ISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIG 474
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 13/207 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL--FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
K+IH Q++ F + L + C ++ + K+F+ I N+ W ++I
Sbjct: 174 KKIHCQIVKVPSFDNVVLTGLLDMYAKCG-----EIKSSYKVFEDITLRNVVCWTSMIAG 228
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----ED 152
Y +D + ++F ++ NS NE+T ++ A + G+ HG E
Sbjct: 229 YVKNDLYEEGLVLFNRMRENSV-LGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIEL 287
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+ SL+ Y CGD++ A VF D+V W +MI G+ G +A+ L+++M
Sbjct: 288 SSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMS 347
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFG 239
+KP+ VT+ VLS C +LE G
Sbjct: 348 GVGIKPNCVTIASVLSGCGLVGNLELG 374
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+ +F+ + ++ WN++I +S + ++ +F ++ S PN T+ + A A
Sbjct: 408 AKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESV-MPNGVTVASLFSACA 466
Query: 136 RPVQFRVGQAIHG-------MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+G ++H + + + +L+ FYA CGD A +F I +K+ ++W
Sbjct: 467 SLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITW 526
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++MI G+ + G + ++EL+ EM + KP+E T VLSAC+
Sbjct: 527 SAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACS 569
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E AR +FD I + N TW+ +I Y + S +F +++ PNE T V+ A
Sbjct: 509 ESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQK-PNESTFTSVLSA 567
Query: 134 AARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMA 173
+ G+ D + S H+ + LA A
Sbjct: 568 CSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARA 607
>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
Length = 941
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 17/232 (7%)
Query: 35 NQKQL---KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNL 88
N K L +++H+QM+S D Y + +++ C SL+ AR F I Q N+
Sbjct: 433 NSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCG-----SLDDARAAFQGIHQRNV 487
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
++W LI + E + + + N+ T ++ A + +G+ IH
Sbjct: 488 FSWTILISLLVQNGEASEGLELLKSMDLEGTE-ANKITFISLLGACSVTGDLSLGKTIHE 546
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
E D++ SN+L++ Y C L A VF + +DVVSW +IS + G+ +
Sbjct: 547 RIRTKGLESDIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLE 606
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
A++LYR ME E +PD VT++ VL ACA R L G + I +G++ D+
Sbjct: 607 ALQLYRRMEQEFSRPDAVTLISVLEACASLRALVEGKAIHERIVASGVETDV 658
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 18/193 (9%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++F +I +P++ +W+ I AY E I++F +L+ PN TL V++A A
Sbjct: 267 AREVFLRISRPSVISWSAFIAAYGQHWEAIKTF----ELMNLEGVKPNATTLTSVLRACA 322
Query: 136 RPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ IH G + + + N+ YA C +A A VF I KD VSWN+
Sbjct: 323 TVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNA 382
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK---------KRDLEFGIW 241
++S + + G F AI L R+M+VE PD++T + +L +C++ + L G
Sbjct: 383 IVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDGRQ 442
Query: 242 VSSHIEKNGIKMD 254
V S + NG+ D
Sbjct: 443 VHSQMISNGLDGD 455
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 14/234 (5%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + Q K+IHA++LS+ ++ L + C S+E AR FD++P+ +L
Sbjct: 23 LGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCG-----SVEEARNAFDRMPERDLI 77
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-- 147
+WN +I Y+ + Q+ ++ P+E T ++ A + G+ +H
Sbjct: 78 SWNAMITVYAQHECGKQAIQLYAYSRLEGTK-PDEVTFASLLNACFASGDLKFGRMLHEH 136
Query: 148 ---GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
F D ++ N LI Y+ CG L A VF + DV +W ++I+ + G E A
Sbjct: 137 FLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYTRHGKLECA 196
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ +M E ++ +E+T + VL C+ LE G V +G+ L E
Sbjct: 197 FATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRME 250
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 104/200 (52%), Gaps = 17/200 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+RI A + TD F S + C ++E AR++FD+I ++ WN +I AY+
Sbjct: 647 ERIVASGVETDVFVGTAVVS-FYGKC-----EAVEDARQVFDRILDKDIVCWNAMIGAYA 700
Query: 100 SSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFED 152
+ ++F ++L++V N P PN+ TL ++ + + + G ++H G
Sbjct: 701 QNHCEEKAFALYLEMVENQMP--PNDVTLITLLDSCSSTCKMERGSSLHREAAARGYLSH 758
Query: 153 DLVISNSLIHFYA-VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
V+ N+LI+ YA CG+L A F + K+VVSW+S+++ + G ++A L+ M
Sbjct: 759 TSVV-NALINMYAKCCGNLEAAQTAFESVASKNVVSWSSIVAAYARNGEEDRARNLFWTM 817
Query: 212 EVENVKPDEVTMVVVLSACA 231
+ V P+ VT VL AC+
Sbjct: 818 NQDGVLPNIVTFTSVLHACS 837
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 8/205 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH ++ + D +++ L +T SL+ AR +F+++ ++ +W +I AY+
Sbjct: 542 KTIHERIRTKGLESDIITSNALLN--MYTTCESLDEARLVFERMVFRDVVSWTIIISAYA 599
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
+ P+++ ++ ++ P+ TL V++A A G+AIH E D+
Sbjct: 600 HAGYPLEALQLYRRMEQEFSR-PDAVTLISVLEACASLRALVEGKAIHERIVASGVETDV 658
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +++ FY C + A VF I KD+V WN+MI + + EKA LY EM
Sbjct: 659 FVGTAVVSFYGKCEAVEDARQVFDRILDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVEN 718
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
+ P++VT++ +L +C+ +E G
Sbjct: 719 QMPPNDVTLITLLDSCSSTCKMERG 743
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
+E TL + A A G+ IH +++SNSL++ Y CG + A F
Sbjct: 9 DEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAF 68
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ ++D++SWN+MI+ + + ++AI+LY +E KPDEVT +L+AC DL+
Sbjct: 69 DRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLK 128
Query: 238 FGIWVSSH 245
FG + H
Sbjct: 129 FGRMLHEH 136
>gi|302801912|ref|XP_002982712.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
gi|300149811|gb|EFJ16465.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
Length = 734
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 18/233 (7%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS---LEYARKMFDQIPQPNLYTW 91
N + +R+H D Y S C + ++ L A+ FD+I N + W
Sbjct: 29 NVSEGRRLH-----DDLRRSGYGDSSYLRRCVVQMYAKCGCLADAKAAFDEIADKNDFVW 83
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
N +I Y+ S + ++ L+L + PN F + A A G+ IH
Sbjct: 84 NLMISGYARSGKNREA----LELFHKMDIPPNGFIFASALAACAGLGDLEQGREIHKRVL 139
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
D+V+ NSL+ YA CG + +F + +K++VSWN+MIS FV+ + E+A+
Sbjct: 140 ESRSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMISAFVQCDYPEQAL 199
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
ELY M+ E ++P+ +L+ACA +L+ G + I G++ D+ E
Sbjct: 200 ELYHRMKRERLEPNGFVFASLLTACASLGNLQLGSSIHQRITSLGLQRDIVME 252
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 105/212 (49%), Gaps = 23/212 (10%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYAR--------KMFDQIP 84
L + +Q + IH ++L + AS + +L T YAR K+FD +P
Sbjct: 125 LGDLEQGREIHKRVLESRSI-----ASDVVVQNSLVTM----YARCGSVLEGIKIFDAMP 175
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ NL +WN +I A+ D P Q+ ++ ++ PN F ++ A A ++G
Sbjct: 176 RKNLVSWNAMISAFVQCDYPEQALELYHRM-KRERLEPNGFVFASLLTACASLGNLQLGS 234
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+IH + D+V+ N+LI+ Y+ CG + A VF + +DV +W SMI+G+ + G
Sbjct: 235 SIHQRITSLGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLG 294
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F +A Y M + V P T V +LSAC+
Sbjct: 295 FGSEAFAFYDRMRRDCVSPTSATFVALLSACS 326
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A S +E ARK+FD++ ++ TW +I+ Y+ + + +F ++ P+
Sbjct: 457 AYSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVE-PDSV 515
Query: 126 TLPFVIKAAA-----RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T V++A + R V R+ A G D + N LI+ YA CG + A +F +
Sbjct: 516 TFSSVLQACSNLEDGREVHARILAAQGGKMSD--FLGNGLINMYARCGSMRDARQIFESM 573
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ +SW+++++ G + I+ YR M E V PD VT++ +L++C+
Sbjct: 574 DRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLIAILNSCS 624
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 99/195 (50%), Gaps = 16/195 (8%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S SLE A +F ++ Q + +W+ ++ +++ +P ++ +F Q++ + +L
Sbjct: 358 SRCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQFGDPGKALTLFRQMILEGM----QLSL 413
Query: 128 PF---VIKAAARPVQFRVGQAIHGMFE----DDL-VISNSLIHFYAVCGDLAMAYCVFVM 179
P ++A + R+ + I + + D + I L+ Y+ CGD+ A +F
Sbjct: 414 PTFCSALQACSLKRDSRLSKTIRELIDWSGIDKMDSIRADLVSAYSKCGDMEEARKIFDR 473
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ +DV++W MI G+ + G + A+EL+ M+ E V+PD VT VL AC+ +LE G
Sbjct: 474 MESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACS---NLEDG 530
Query: 240 IWVSSHI-EKNGIKM 253
V + I G KM
Sbjct: 531 REVHARILAAQGGKM 545
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 10/193 (5%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A ++F + +++TW ++I Y+ ++F F + P T
Sbjct: 260 SKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGFGSEAF-AFYDRMRRDCVSPTSATF 318
Query: 128 PFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ A + Q G+ +H FE V+ +L+ Y+ CG L A +F + +
Sbjct: 319 VALLSACSTLEQ---GKHLHEEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQ 375
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
KD VSW++M++ + G KA+ L+R+M +E ++ T L AC+ KRD +
Sbjct: 376 KDYVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTI 435
Query: 243 SSHIEKNGI-KMD 254
I+ +GI KMD
Sbjct: 436 RELIDWSGIDKMD 448
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 114/211 (54%), Gaps = 19/211 (9%)
Query: 33 LTNQKQLKRIHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIP--QPN 87
L + + +RIHA+ F S L+ C L E A ++FD+IP + N
Sbjct: 131 LLSLRHGERIHAEAAKNGLATLVFVKNSLVHLYGACGL-----FESAHRVFDEIPVGERN 185
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
L +WN+++ ++++ P + IF +++ + + P+ FT+ V+ A+A +G+ +H
Sbjct: 186 LVSWNSMLNGFAANGRPNEVLTIFREML-DVNFMPDGFTVVSVLTASAEIGALALGRRVH 244
Query: 148 ------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG-KKDVVSWNSMISGFVEGGF 200
G+ E+ V N+LI YA CG + A VF +G ++ VVSW S+I G GF
Sbjct: 245 VYLTKVGLVENSHV-GNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNGF 303
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++A+EL+ ME E + P E+TMV VL AC+
Sbjct: 304 GKEALELFGIMEREKLVPTEITMVGVLYACS 334
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 13/222 (5%)
Query: 39 LKRIHAQMLSTDFF-FDPYSASKLFTPCALSTFSSLEYARKMFDQI-PQPNLYTWNTLIR 96
+K++HA+ L P A L A L YA + ++ P P+ ++ NT++R
Sbjct: 35 VKQLHARALRAGVPPAHPLLAKHLLFHLASLRAPPLRYAVAVLTRVLPDPDPFSLNTVLR 94
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD--- 153
+SS P S + L +P P+ T P +++A AR + R G+ IH +
Sbjct: 95 IAASSSRP--SLALALHARRLAP--PDTHTYPPLLQACARLLSLRHGERIHAEAAKNGLA 150
Query: 154 --LVISNSLIHFYAVCGDLAMAYCVF--VMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ + NSL+H Y CG A+ VF + +G++++VSWNSM++GF G + + ++R
Sbjct: 151 TLVFVKNSLVHLYGACGLFESAHRVFDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFR 210
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
EM N PD T+V VL+A A+ L G V ++ K G+
Sbjct: 211 EMLDVNFMPDGFTVVSVLTASAEIGALALGRRVHVYLTKVGL 252
>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 734
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 108/197 (54%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+ H+ + T D Y S L + F + ARK+FD++P+ N +W T+I Y+
Sbjct: 138 KQAHSVAVKTGCSGDVYVGSSLLNMYCKTGF--VFDARKLFDRMPERNTVSWATMISGYA 195
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-FEDDLV--- 155
SSD ++ +F +L+ NEF L V+ A V G+ +H + ++ L+
Sbjct: 196 SSDIADKAVEVF-ELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIV 254
Query: 156 -ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++N+L+ YA CG L A F G K+ ++W++M++G+ +GG +KA++L+ +M
Sbjct: 255 SVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSS 314
Query: 215 NVKPDEVTMVVVLSACA 231
V P E T+V V++AC+
Sbjct: 315 GVLPSEFTLVGVINACS 331
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 14/200 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++H+ F Y S ++ C SL ARK F+ + QP++ W ++I
Sbjct: 340 KQMHSFAFKLGFGLQLYVLSAVVDMYAKCG-----SLADARKGFECVQQPDVVLWTSIIT 394
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + + ++ ++ PNE T+ V++A + G+ +H F+
Sbjct: 395 GYVQNGDYEGGLNLYGKMQMER-VIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFK 453
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ I ++L Y CG L Y +F + +DV+SWN+MISG + G KA+EL+ +M
Sbjct: 454 LEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKM 513
Query: 212 EVENVKPDEVTMVVVLSACA 231
+E +KPD VT V +LSAC+
Sbjct: 514 LLEGIKPDPVTFVNLLSACS 533
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 6/190 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SL+ A + F+ N TW+ ++ Y+ + ++ +F ++ ++S P+EFTL V
Sbjct: 268 GSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKM-HSSGVLPSEFTLVGV 326
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
I A + G+ +H F L + ++++ YA CG LA A F + + DV
Sbjct: 327 INACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDV 386
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V W S+I+G+V+ G +E + LY +M++E V P+E+TM VL AC+ L+ G + +
Sbjct: 387 VLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHAR 446
Query: 246 IEKNGIKMDL 255
I K G K+++
Sbjct: 447 IIKYGFKLEV 456
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 18/258 (6%)
Query: 4 LSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFT 63
+S P I P+H + H + N + + +HA++L T Y +
Sbjct: 1 MSLPKIFPPQHRQLLQDLIECTHNK------NILKGRTLHARILKTGSISSIYVTNTFLN 54
Query: 64 PCALSTFSSLEYARKMFDQIPQPNL--YTWNTLIRAYSSSDEPIQ---SFMIFLQLVYNS 118
A + + L +A +FD I + +WN+LI A+S + + +F +++ +
Sbjct: 55 LYAKT--NHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRAN 112
Query: 119 PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMA 173
PN TL V AA+ G+ H + D+ + +SL++ Y G + A
Sbjct: 113 NVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDA 172
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+F + +++ VSW +MISG+ +KA+E++ M E +E + VLSA
Sbjct: 173 RKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSD 232
Query: 234 RDLEFGIWVSSHIEKNGI 251
+ G V S KNG+
Sbjct: 233 VFVYTGRQVHSLAIKNGL 250
>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 762
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 14/224 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++IHA ++ T D + + ++ C ++E ARK+FD++P+ N+ +W TL+
Sbjct: 89 QKIHAHIVKTGAHKDAFLMTFLVNVYAKCG-----TMETARKVFDELPRRNVVSWTTLMT 143
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFE 151
Y +P + +F +++ Y P +TL + A++ +G+ IHG E
Sbjct: 144 GYVHDSKPELAVQVFREMLEAGAY-PTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIE 202
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D I NSL Y+ CG L A F I K+V+SW ++IS + + G ++ + EM
Sbjct: 203 FDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEM 262
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E V+P+E T+ LS C + L+ G + S K G + +L
Sbjct: 263 LSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNL 306
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 93/172 (54%), Gaps = 17/172 (9%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYS-----SSDE------PIQSFMIFLQLVYNSPYFPNE 124
A+K+FD++ +L TWN +I ++ + D+ ++ IFL+L S P+
Sbjct: 325 AKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKL-NRSGMKPDL 383
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
FT V+ + V G+ +H F D+V+ +L++ Y CG + A FV
Sbjct: 384 FTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVE 443
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ + ++SW SMI+G+ + G ++A+ L+ +M + V+P+++T V VLSAC+
Sbjct: 444 MSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACS 495
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 105/233 (45%), Gaps = 21/233 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCAL-STFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
K+IH + FD + L C+L S SLE A K F +I N+ +W T+I A+
Sbjct: 190 KQIHGYSIKYRIEFDASIGNSL---CSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAW 246
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ E F++++ + PNEFTL + +G IH + FE +
Sbjct: 247 GDNGEAATGLQFFVEML-SECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESN 305
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK---------- 203
L I NS+++ Y CG + A +F + +V+WN+MI+G F K
Sbjct: 306 LPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGT 365
Query: 204 -AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
A+ ++ ++ +KPD T VLS C+ LE G V + K G D+
Sbjct: 366 EALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDV 418
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 91/213 (42%), Gaps = 37/213 (17%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q +++HAQ + T F D + L + C S+E A K F ++ L +W +
Sbjct: 400 EQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCG-----SIERASKAFVEMSIRTLISWTS 454
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
+I Y+ + +P Q+ ++F + + PN+ T V+ A + GM ++
Sbjct: 455 MITGYAQNGQPQQALLLFEDMRL-AGVRPNKITFVGVLSACSHA----------GMVDEA 503
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L + + Y + + C+ M FV G ++A + +EM++
Sbjct: 504 LDYFQMMKNEYKITPVMDHYACLIDM---------------FVRLGRLDEAFDFIKEMDL 548
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
E P+E ++++ C + LE G + + +
Sbjct: 549 E---PNEFIWSILIAGCRSQGKLELGFYAAEQL 578
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 6/177 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ +LE A +F+Q+P ++ +W T+I YS + ++ +F +++ P+E T+
Sbjct: 984 TRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMM-EEGIIPDEVTM 1042
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
VI A A +G+ +H F D+ I ++L+ Y+ CG L A VF + K
Sbjct: 1043 STVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK 1102
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
K++ WNS+I G GF ++A++++ +ME+E+VKP+ VT V V +AC +E G
Sbjct: 1103 KNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEG 1159
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 35/188 (18%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S + ARK+FD++P+ + TW T++ AY + NS N+
Sbjct: 922 SASGRIREARKVFDEMPERDDVTWTTMVSAYR---------QVLDMDSANS--LANQ--- 967
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
M E + N LI Y G+L +A +F + KD++S
Sbjct: 968 ---------------------MPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIIS 1006
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W +MI+G+ + +AI ++ +M E + PDEVTM V+SACA LE G V +
Sbjct: 1007 WTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTV 1066
Query: 248 KNGIKMDL 255
+NG +D+
Sbjct: 1067 QNGFVLDV 1074
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H + F D Y S L ++ C SLE A +F +P+ NL+ WN++I
Sbjct: 1059 KEVHMYTVQNGFVLDVYIGSALVDMYSKCG-----SLERALLVFFNLPKKNLFCWNSIIE 1113
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
++ ++ +F ++ S PN T V A G+ E+ I
Sbjct: 1114 GLAAHGFAQEALKMFAKMEMESVK-PNTVTFVSVFTACTHA----------GLVEEGRRI 1162
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S+I Y++ ++ C M+ F + G +A+EL ME E
Sbjct: 1163 YRSMIDDYSIVSNVEHYGC---------------MVHLFSKAGLIYEALELIGSMEFE-- 1205
Query: 217 KPDEVTMVVVLSACAKKRDLEFG 239
P+ V +L C ++LE
Sbjct: 1206 -PNAVIWGALLDGCRIHKNLEIA 1227
>gi|255549932|ref|XP_002516017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544922|gb|EEF46437.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 14/227 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++HA + FD A KL + +SL AR +FD+IP+ NL+ WN LIR Y+
Sbjct: 107 KQLHASLCHVGLQFDRVLAPKLVNLYCIC--NSLCEARLLFDKIPKRNLFLWNVLIRGYA 164
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
P ++ + +++ P+ FT PFV+KA + G+ IH +E D+
Sbjct: 165 WYG-PYEASIQLYYKIFDYGLVPDNFTFPFVLKACSALSAIEDGRLIHEQVMRSGWERDV 223
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +LI Y+ CG + A VF +D V WNSM++ + + G +K++ L EM +
Sbjct: 224 FVGAALIDMYSKCGCVDNAREVFHKFPVRDAVLWNSMLAAYSQNGKPDKSLALCSEMVLA 283
Query: 215 NVKPDEVTMVVVLSACA------KKRDLEFGIWVSSHIEKNGIKMDL 255
V+P E T+V V+SA A + R+L W + +K L
Sbjct: 284 GVRPTEATLVTVISASADIAALPQGRELHGFAWRRRFESNDKVKTTL 330
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 20/222 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ IH Q++ + + D + + L S ++ AR++F + P + WN+++ AYS
Sbjct: 208 RLIHEQVMRSGWERDVFVGAALID--MYSKCGCVDNAREVFHKFPVRDAVLWNSMLAAYS 265
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ +P +S + ++V + P E TL VI A+A G+ +HG FE +
Sbjct: 266 QNGKPDKSLALCSEMVL-AGVRPTEATLVTVISASADIAALPQGRELHGFAWRRRFESND 324
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +LI YA CG + +A +F + K+VVSWN++I+G+ G+ + + L+ M E
Sbjct: 325 KVKTTLIDMYAKCGTMKVAQNLFEQLRDKNVVSWNAIITGYAMHGYSNEVLILFDRMR-E 383
Query: 215 NVKPDEVTMVVVLSACAK-----------KRDLEFGIWVSSH 245
KPD +T V VL AC+ R +E + SSH
Sbjct: 384 EAKPDHITFVGVLLACSNGGLLDKEFPRYDRSMEESVAASSH 425
>gi|255572347|ref|XP_002527112.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533535|gb|EEF35275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 364
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 19/244 (7%)
Query: 17 PTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYA 76
P T+++ Q H +T H Q F S SKL ALS ++L A
Sbjct: 10 PKCTTLSHAEQIQCHLITTG------HFQ------FKISSSRSKLLEFFALS-LNNLSVA 56
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
K F QI P+ WN ++R S +PI SF + ++ S Y + T FV+KA AR
Sbjct: 57 IKAFYQILTPSTNDWNAVLRGLIQSPDPIDSFKWYKTMIRGS-YKVDALTCSFVLKACAR 115
Query: 137 PVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
+ F +H F D ++ +L+ YA GDL A +F + KD+ SWN++
Sbjct: 116 VLAFSESTQLHSHIVRKGFVADALLGTTLLDLYAKTGDLDSAQKMFDEMIVKDIASWNAL 175
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
ISGF +G +A+ L++ MEV KP+E+T++ LSAC++ + G + +I +
Sbjct: 176 ISGFAQGNKPSEALGLFKRMEVLGFKPNEITVLGALSACSQLGAFKEGEKIHEYIRSQKL 235
Query: 252 KMDL 255
M++
Sbjct: 236 DMNV 239
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 102/196 (52%), Gaps = 9/196 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H+ ++ F D + L A + L+ A+KMFD++ ++ +WN LI ++
Sbjct: 124 QLHSHIVRKGFVADALLGTTLLDLYAKT--GDLDSAQKMFDEMIVKDIASWNALISGFAQ 181
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLV 155
++P ++ +F ++ + PNE T+ + A ++ F+ G+ IH ++
Sbjct: 182 GNKPSEALGLFKRMEVLG-FKPNEITVLGALSACSQLGAFKEGEKIHEYIRSQKLDMNVQ 240
Query: 156 ISNSLIHFYAVCGDLAMAYCVF-VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+ I YA CG AY VF M K +V+WN+MI F G +KA++L++ M E
Sbjct: 241 VCNAAIDMYAKCGFADKAYLVFESMSCGKSLVTWNTMIMAFAMHGDGDKALKLFKYMHQE 300
Query: 215 NVKPDEVTMVVVLSAC 230
V PD V+ + VL AC
Sbjct: 301 GVSPDAVSYLAVLCAC 316
>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g34160-like [Cucumis sativus]
Length = 576
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 113/218 (51%), Gaps = 8/218 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H+Q+L F D + L A + L+ A+K+FD++PQP++ +WN LI ++
Sbjct: 124 QLHSQLLRFGFNADVLLQTTLLD--AYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQ 181
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLV 155
P + M F ++ + PN T+ + A ++ + G+++H + ++
Sbjct: 182 GSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQ 241
Query: 156 ISNSLIHFYAVCGDLAMAYCVFV-MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N +I YA CG + AY VF M K +++WN+MI F G KA++L+ ++
Sbjct: 242 VCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRS 301
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+ PD V+ + VL AC +E G+ + + + + G++
Sbjct: 302 GMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLE 339
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 9/217 (4%)
Query: 38 QLKRIHAQML-STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
Q+K++ A ++ + DF F S +KL CA+S+F L YA +F IP P+ WN +IR
Sbjct: 16 QIKQLQANLIINGDFHFSS-SRTKLLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIR 74
Query: 97 AYSSSDEPIQSFMIFLQLVY-NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
+ S +P + + + N + + T F +KA AR + +H F
Sbjct: 75 GTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGF 134
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D+++ +L+ YA GDL +A +F + + D+ SWN++I+GF +G AI ++
Sbjct: 135 NADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKR 194
Query: 211 MEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
M+V+ N++P+ VT+ L AC++ L+ G V +I
Sbjct: 195 MKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYI 231
>gi|414887787|tpg|DAA63801.1| TPA: hypothetical protein ZEAMMB73_367984 [Zea mays]
Length = 711
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 9/228 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+++R+HA +L + A++L A L +A ++FD +P N + WN +I+
Sbjct: 75 EVRRLHAALLVRGYHRSTVLAAQLVRAYARMRDGGLGHAVRVFDGMPTRNSFAWNAVIKG 134
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA--------RPVQFRVGQAI-HG 148
+ ++ + +V + + FT P V+KA A R VQ V I G
Sbjct: 135 LVDAGRFSEALRWYWDMVRDGSVVADRFTYPPVLKACAALGEVEQGRKVQENVETDIARG 194
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ + ++ + +L+ +A CG L A +F +G +D+ SW +MI G V GG + + + L
Sbjct: 195 IAKGNVFVQCALVDMFAKCGCLGEARNMFESMGVRDLASWTAMIGGAVRGGDWLEVMTLL 254
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ M+ E +PD + V+ AC K ++L G+ + + K G+ D+
Sbjct: 255 KRMKSEGFRPDSMIFATVIPACGKVKELRTGMALHGYAVKCGVGDDIC 302
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 10/192 (5%)
Query: 57 SASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
+ +F CAL + L AR MF+ + +L +W +I + ++ M L
Sbjct: 196 AKGNVFVQCALVDMFAKCGCLGEARNMFESMGVRDLASWTAMIGGAVRGGDWLE-VMTLL 254
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVC 167
+ + + + P+ VI A + + R G A+HG DD+ + N+L+ Y C
Sbjct: 255 KRMKSEGFRPDSMIFATVIPACGKVKELRTGMALHGYAVKCGVGDDICVPNALVDMYCKC 314
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
L MA +F I KDV SW+++I+G + + ++ L+ EM +KP+ T+ +L
Sbjct: 315 ARLDMAASLFWSIDHKDVFSWSTIIAGHSQNRIYNVSVSLFTEMVASGIKPNSTTIASIL 374
Query: 228 SACAKKRDLEFG 239
+ ++ R L +G
Sbjct: 375 PSISELRLLRYG 386
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 89/170 (52%), Gaps = 6/170 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+ +F+ P+ +L N++IR Y + + +S + L+ + P+ T+ V+
Sbjct: 421 AQIVFEFKPKNDLVVLNSMIRGYVVNKDS-ESALRLLRALLKEGLRPDHVTVVSVLPLCN 479
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+P + G+ +H ++N+L Y CG L +A +F+++ +++ V++N+
Sbjct: 480 QPSRLLQGKELHAYAIRHNISSCFSVTNALTDMYCKCGCLEIANKIFLLMTERNTVTYNT 539
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+IS + G ++A L+ M+ + V PD+VT V +LS C+ ++ G+
Sbjct: 540 LISSLGKHGHADQAFILFDLMKRDGVSPDKVTFVALLSCCSHGGLIDKGL 589
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 11/181 (6%)
Query: 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
P + ++ CA L+ A +F I ++++W+T+I +S + S +F ++
Sbjct: 304 PNALVDMYCKCA-----RLDMAASLFWSIDHKDVFSWSTIIAGHSQNRIYNVSVSLFTEM 358
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGD 169
V S PN T+ ++ + + R G+ IH E ++++LI FY G
Sbjct: 359 V-ASGIKPNSTTIASILPSISELRLLRYGKEIHCFSLRNRLEHSEFLASALIDFYCRQGY 417
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
+ A VF K D+V NSMI G+V E A+ L R + E ++PD VT+V VL
Sbjct: 418 IRDAQIVFEFKPKNDLVVLNSMIRGYVVNKDSESALRLLRALLKEGLRPDHVTVVSVLPL 477
Query: 230 C 230
C
Sbjct: 478 C 478
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 118/219 (53%), Gaps = 8/219 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+HA ++ F DP + L T S YARK+ D+ + ++ +W++L+ Y
Sbjct: 2 ELHAHLIKFGFSRDPSLRNHLVT--LYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQ 59
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLV 155
+ ++ ++F ++ NEFT P V+KA + +G+ +HGM FE D
Sbjct: 60 NGFVEEALLVFNEMCLLGVK-CNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGF 118
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
++N+L+ YA CG L + +F I +++VVSWN++ S +V+ +A+ L++EM
Sbjct: 119 VANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSG 178
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ P+E ++ ++L+ACA ++ + G + + K G+ +D
Sbjct: 179 IMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLD 217
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 18/223 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+++H + T F D + A+ L + C L L+ +R++F I + N+ +WN L
Sbjct: 102 RKVHGMAVVTGFESDGFVANTLVVMYAKCGL-----LDDSRRLFGGIVERNVVSWNALFS 156
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y S+ ++ +F ++V S PNEF++ ++ A A + +G+ IHG+ +
Sbjct: 157 CYVQSELCGEAVGLFKEMV-RSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLD 215
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D +N+L+ Y+ G++ A VF I DVVSWN++I+G V + A+ L EM
Sbjct: 216 LDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEM 275
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ +P+ T+ L ACA E G + S + IKMD
Sbjct: 276 KGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSL----IKMD 314
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 17/229 (7%)
Query: 37 KQLKR-IHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
K+L R +H+ ++ D D ++A L ++ C + ++ AR+ +D +P+ ++ WN
Sbjct: 300 KELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEM-----MDDARRAYDSMPKKDIIAWN 354
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----- 147
LI YS + + + +F ++ F N+ TL V+K+ A +V + IH
Sbjct: 355 ALISGYSQCGDHLDAVSLFSKMFSEDIDF-NQTTLSTVLKSVASLQAIKVCKQIHTISIK 413
Query: 148 -GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
G++ D VI NSL+ Y C + A +F +D+V++ SMI+ + + G E+A++
Sbjct: 414 SGIYSDFYVI-NSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALK 472
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
LY +M+ ++KPD +L+ACA E G + H K G D+
Sbjct: 473 LYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDI 521
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 102/199 (51%), Gaps = 8/199 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K K+IH + + + D Y + L + ++ A K+F++ +L + ++I
Sbjct: 402 KVCKQIHTISIKSGIYSDFYVINSLLDT--YGKCNHIDEASKIFEERTWEDLVAYTSMIT 459
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
AYS + ++ ++LQ+ ++ P+ F ++ A A + G+ +H F
Sbjct: 460 AYSQYGDGEEALKLYLQM-QDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFM 518
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ SNSL++ YA CG + A F I + +VSW++MI G+ + G ++A+ L+ +M
Sbjct: 519 CDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQM 578
Query: 212 EVENVKPDEVTMVVVLSAC 230
+ V P+ +T+V VL AC
Sbjct: 579 LRDGVPPNHITLVSVLCAC 597
>gi|15239985|ref|NP_199192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75262420|sp|Q9FG85.1|PP415_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g43790
gi|10177948|dbj|BAB11307.1| unnamed protein product [Arabidopsis thaliana]
gi|332007627|gb|AED95010.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 460
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 22/234 (9%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK+IHAQ+++ Y SKL LS+ L YA + QIP P+++ +NTLI
Sbjct: 23 QNLKQIHAQIITIGLSHHTYPLSKLL---HLSSTVCLSYALSILRQIPNPSVFLYNTLIS 79
Query: 97 AYSSSDEPIQS---FMIFLQLVYNSPYF--PNEFTLPFVIKAAARPVQF-RVGQAIHGM- 149
+ S+ Q+ F ++ Q++ + F PNEFT P + KA+ Q+ R G+A+H
Sbjct: 80 SIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQWHRHGRALHAHV 139
Query: 150 ------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV---EGGF 200
D + +L+ FYA CG L A +F I + D+ +WN++++ + E
Sbjct: 140 LKFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIREPDLATWNTLLAAYANSEEIDS 199
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E+ + L+ M+ V+P+E+++V ++ +CA + G+W ++ KN + ++
Sbjct: 200 DEEVLLLFMRMQ---VRPNELSLVALIKSCANLGEFVRGVWAHVYVLKNNLTLN 250
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 115/216 (53%), Gaps = 14/216 (6%)
Query: 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTW 91
+ + +HA +L F +P + + F AL F L AR +F++I +P+L TW
Sbjct: 129 HRHGRALHAHVLK---FLEPVNHDR-FVQAALVGFYANCGKLREARSLFERIREPDLATW 184
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MF 150
NTL+ AY++S+E I S L L PNE +L +IK+ A +F G H +
Sbjct: 185 NTLLAAYANSEE-IDSDEEVLLLFMRMQVRPNELSLVALIKSCANLGEFVRGVWAHVYVL 243
Query: 151 EDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+++L + SLI Y+ CG L+ A VF + ++DV +N+MI G GF ++ IE
Sbjct: 244 KNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIE 303
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
LY+ + + + PD T VV +SAC+ ++ G+ +
Sbjct: 304 LYKSLISQGLVPDSATFVVTISACSHSGLVDEGLQI 339
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 116/228 (50%), Gaps = 12/228 (5%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PN T + G P LT +HA + D + S L A L+
Sbjct: 169 PNAYTFSSVLGACTTPGMLTA------VHASTVKAGLDSDVFVRSSLID--AYVKLGDLD 220
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
R++FD++ +L WN++I ++ S + + + +F+++ ++ + N+ TL V++A
Sbjct: 221 GGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRM-KDAGFSSNQGTLTSVLRAC 279
Query: 135 ARPVQFRVGQAIHG---MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
V G+ +H ++ DL++ N+L+ Y CG L A +F + ++DV+SW++M
Sbjct: 280 TGMVMLEAGRQVHAHVLKYDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTM 339
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+SG + G +A+ ++ M+ + V P+ VTMV VL AC+ +E G
Sbjct: 340 VSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDG 387
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 57 SASKLFTPCALST----FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
A LF +L++ F L+ A +MFD +P N+ TW T++ A +S+D Q + FL
Sbjct: 100 GAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFL 159
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA--IHGMFEDDLVISNSLIHFYAVCGDL 170
+ PN +T V+ A P A + + D+ + +SLI Y GDL
Sbjct: 160 VAMRRDGVAPNAYTFSSVLGACTTPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDL 219
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
VF + +D+V WNS+I+GF + G AIEL+ M+ ++ T+ VL AC
Sbjct: 220 DGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRAC 279
Query: 231 AKKRDLEFGIWVSSHIEK 248
LE G V +H+ K
Sbjct: 280 TGMVMLEAGRQVHAHVLK 297
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 26/178 (14%)
Query: 79 MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF---------------PN 123
+F ++P+ + R + P S F +L P +
Sbjct: 4 LFKRLPRKRVAATRRSSRRVHAQPRPHPSLTTFSRLCVEGPLPAALALLSELAAAGLRAD 63
Query: 124 EFTLPFVIKAAARPVQFRVGQAIHGMFE----------DDLVISNSLIHFYAVCGDLAMA 173
+L ++K R G+ IH E L +SNSL YA G L A
Sbjct: 64 PVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDA 123
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEG-GFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+F + ++VV+W ++++ G ++A+ M + V P+ T VL AC
Sbjct: 124 LRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGAC 181
>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 638
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 8/182 (4%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+ + LY WNTL+++ S D+ + M ++ P+ FTLP +KA + +
Sbjct: 1 MTKRTLYQWNTLLKSLSR-DKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKY 59
Query: 143 GQAIHGMFE------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
G+ IHG + DL + +SLI+ Y CG + A +F + K D+V+W+SM+SGF
Sbjct: 60 GEMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFE 119
Query: 197 EGGFFEKAIELYREME-VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ G +A+E +R M +V PD VT++ ++SAC K + G V + + G DL
Sbjct: 120 KNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDL 179
Query: 256 TF 257
+
Sbjct: 180 SL 181
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 54 DPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMI 110
D Y S L + C T A +MF+++ +P++ TW++++ + + P Q+
Sbjct: 76 DLYVGSSLIYMYVKCGRMT-----EALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEF 130
Query: 111 FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA 165
F ++ S P+ TL ++ A + R+G+ +HG F +DL + NSL++ YA
Sbjct: 131 FRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYA 190
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
A +F M+ +KDV+SW+++I+ +V+ G +A+ ++ EM + +P+ T++
Sbjct: 191 KSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLC 250
Query: 226 VLSACAKKRDLEFG 239
VL ACA DLE G
Sbjct: 251 VLQACAAANDLEQG 264
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 9/206 (4%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+N + + +H ++ F D + L A S + + A +F + + ++ +W+
Sbjct: 157 LSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKS--RAFKEAVNLFKMMAEKDVISWS 214
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
T+I Y + ++ +F +++ + PN T+ V++A A G+ H +
Sbjct: 215 TVIACYVQNGAAAEALRVFNEMIDDGTE-PNVATVLCVLQACAAANDLEQGRKTHELAIR 273
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
E ++ +S +L+ Y C AY VF I KKDVVSW ++ISGF G ++IE
Sbjct: 274 KGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEE 333
Query: 208 YREMEVE-NVKPDEVTMVVVLSACAK 232
+ M +E N +PD + M+ VL +C++
Sbjct: 334 FSIMLLENNTRPDAILMLKVLGSCSE 359
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A +F +IP+ ++ +W LI ++ + +S F ++ + P+ + V+ +
Sbjct: 297 EEAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGS 356
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ + + H F+ + I SL+ Y+ CG L A VF I KD V W
Sbjct: 357 CSELGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVW 416
Query: 189 NSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACA 231
S+I+G+ G KA+E + M VKP+EVT + +LSAC+
Sbjct: 417 TSLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACS 460
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
KQ + H+ ++ F +P+ S +L++ C SL A K+F++I + W +
Sbjct: 364 KQAECFHSYVIKYGFDSNPFIGASLVELYSRCG-----SLGNASKVFNEIALKDTVVWTS 418
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
LI Y + ++ F +V +S PNE T ++ A + G I + +D
Sbjct: 419 LITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMVND 478
Query: 154 LVISNSLIHFYAVCGDL 170
++ +L H YAV DL
Sbjct: 479 YRLAPNLEH-YAVLVDL 494
>gi|125564403|gb|EAZ09783.1| hypothetical protein OsI_32071 [Oryza sativa Indica Group]
Length = 628
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + F +E A +F+ P+ N+ +W +I ++ + ++ F++++ P++F
Sbjct: 281 AHARFGYIEQAALLFESAPETNIISWTAMIGGFARNGLTSEALAHFVKMLTQEYIQPDDF 340
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T V+ A A G+ +H G F L ++N+L+ YA CGD+ A VF I
Sbjct: 341 TFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDAI 400
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+KD+VSWN+M+ GF G ++A+E+Y M NV PDEVT +L+AC+ LE G
Sbjct: 401 HQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACSHSGLLEQG 459
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 38/215 (17%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A ++FD++P + WNTL+ +S S Q +F Q+ + S ++ TL ++
Sbjct: 156 MELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQM-WMSGLTCDDATLCILVD 214
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFY----------------------- 164
A A G AIH + + ++NSLI FY
Sbjct: 215 ACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIFESMKTRTTAS 274
Query: 165 --------AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV-EN 215
A G + A +F + +++SW +MI GF G +A+ + +M E
Sbjct: 275 WNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNGLTSEALAHFVKMLTQEY 334
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
++PD+ T VL ACA L G V S + G
Sbjct: 335 IQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGG 369
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 51/92 (55%)
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
SL+H + V G + +A+ +F + K V+WN+++ G G ++ + L+ +M + +
Sbjct: 145 SLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTC 204
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
D+ T+ +++ ACA+ D G + + ++G
Sbjct: 205 DDATLCILVDACAELPDPSTGFAIHKVVVQSG 236
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 10/227 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
TN K++HA +L D ++L T A T L + F I + N+++WN+
Sbjct: 62 TNINVAKQLHALLLVLGKAQDVVLLTQLVTLYA--TLGDLSLSSTTFKHIQRKNIFSWNS 119
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
++ AY S +L+ S P+ +T P V+KA + G+ +H
Sbjct: 120 MVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKAC---LSLADGEKMHCWVLKM 176
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
FE D+ ++ SLIH Y+ G + +A+ VFV + +DV SWN+MISGF + G +A+ +
Sbjct: 177 GFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVL 236
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M+ E VK D VT+ +L CA+ D+ G+ V ++ K+G++ D+
Sbjct: 237 DRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDV 283
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 113/208 (54%), Gaps = 12/208 (5%)
Query: 59 SKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114
S +F AL S F L+ A+++FD + +L +WN++I AY +D+P+ + F ++
Sbjct: 281 SDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEM 340
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCG 168
++ P+ T+ + + R+G+A+HG E D+VI N+L++ YA G
Sbjct: 341 LFVGMR-PDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLG 399
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVL 227
+ A VF + +DV+SWN++I+G+ + G +AI+ Y M E + P++ T V +L
Sbjct: 400 SIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSIL 459
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMDL 255
A + L+ G+ + + KN + +D+
Sbjct: 460 PAYSHVGALQQGMKIHGRLIKNCLFLDV 487
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ S++ AR +F+Q+P ++ +WNTLI Y+ + ++ + + PN+ T
Sbjct: 396 AKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTW 455
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ A + + G IHG D+ ++ LI Y CG L A +F I +
Sbjct: 456 VSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQ 515
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+ V WN++IS G EKA++L+++M + VK D +T V +LSAC+ ++ W
Sbjct: 516 ETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWC 575
Query: 243 SSHIEK 248
++K
Sbjct: 576 FDTMQK 581
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 98/210 (46%), Gaps = 18/210 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H +L F D Y A+ L S F ++E A K+F +P ++ +WN +I +
Sbjct: 167 EKMHCWVLKMGFEHDVYVAASLIH--LYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFC 224
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--------- 150
+ ++ + ++ E + V ++ P+ + + G+
Sbjct: 225 QNGNVAEALRVLDRMK------TEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHG 278
Query: 151 -EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
E D+ +SN+LI+ Y+ G L A VF + +D+VSWNS+I+ + + A+ ++
Sbjct: 279 LESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFK 338
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
EM ++PD +T+V + S + D G
Sbjct: 339 EMLFVGMRPDLLTVVSLASIFGQLSDRRIG 368
>gi|255545590|ref|XP_002513855.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546941|gb|EEF48438.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 99/184 (53%), Gaps = 5/184 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FDQ+ + + +W +I Y S ++ +F +L+ N N T ++ +
Sbjct: 20 ARKVFDQMHERCVVSWTAMINGYVSFGLDDEALRLFSELIENGVT-ANNRTFVCILNVCS 78
Query: 136 RPVQFRVGQAIHGMFED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
+ + F +G+ IH +L++ ++++ FYA CGDL A+C F + +KDVV W S+
Sbjct: 79 KRLDFELGRQIHACVVKGNWRNLIVDSAIVSFYAQCGDLESAFCAFFQVREKDVVCWTSV 138
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
IS + G E+A ++ +M E P+E T+ +L AC +K+ L+FG + I K
Sbjct: 139 ISACSQQGRGEEAFRMFSQMLGEGFLPNEFTVCAILKACGEKKALKFGRQLHCAIVKGMY 198
Query: 252 KMDL 255
K D+
Sbjct: 199 KDDV 202
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE A F Q+ + ++ W ++I A S ++F +F Q++ + PNEFT+ ++K
Sbjct: 117 LESAFCAFFQVREKDVVCWTSVISACSQQGRGEEAFRMFSQML-GEGFLPNEFTVCAILK 175
Query: 133 AAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + G+ +H GM++DD+ I SL+ YA CG++ + VF + K++ V+
Sbjct: 176 ACGEKKALKFGRQLHCAIVKGMYKDDVFIGTSLVDMYAKCGEMIDSKEVFDGMRKRNTVT 235
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W S+I+G+ G E+AI L+R M+ + + +T+V VL AC G V + I
Sbjct: 236 WTSIIAGYARKGLGEEAIRLFRVMKRRKIISNNLTVVSVLRACGSISASLTGREVHAQII 295
Query: 248 KNGIKMDL 255
K+GI+ ++
Sbjct: 296 KSGIQSNV 303
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
++++FD + + N TW ++I Y+ ++ +F +++ N T+ V++A
Sbjct: 221 SKEVFDGMRKRNTVTWTSIIAGYARKGLGEEAIRLF-RVMKRRKIISNNLTVVSVLRACG 279
Query: 136 RPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ +H + ++ + ++L+ FY CG+ +A V + ++VVSW +
Sbjct: 280 SISASLTGREVHAQIIKSGIQSNVYLGSTLVWFYCKCGEFNIASKVLQQMSFRNVVSWTA 339
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MISG++ G+ +A+E +EM E V+P+E T L ACA
Sbjct: 340 MISGYIGLGYEFEALEFLKEMMDEGVEPNEFTYSSALKACA 380
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 10/198 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL-FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+ +HAQ++ + + Y S L + C F+ A K+ Q+ N+ +W +I Y
Sbjct: 288 REVHAQIIKSGIQSNVYLGSTLVWFYCKCGEFN---IASKVLQQMSFRNVVSWTAMISGY 344
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDD 153
++ + FL+ + + PNEFT +KA A G+ IH +
Sbjct: 345 IGLGYEFEA-LEFLKEMMDEGVEPNEFTYSSALKACANLESVLQGKLIHSFANKTPASSN 403
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + ++LI+ Y+ CG L+ A VF + +++++SW +MI + G +A++L M+
Sbjct: 404 VYVGSALIYMYSKCGYLSDAIQVFDSMPERNLISWKTMILSYARNGLCREALKLMYRMQA 463
Query: 214 ENVKPDEVTMVVVLSACA 231
E ++ D+ V+ +C
Sbjct: 464 EGIEVDDYIYASVMGSCG 481
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%)
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + N+LI YA G+L A VF + ++ VVSW +MI+G+V G ++A+ L+ E+
Sbjct: 1 MYVDNNLISVYARLGELIEARKVFDQMHERCVVSWTAMINGYVSFGLDDEALRLFSELIE 60
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
V + T V +L+ C+K+ D E G + + + K
Sbjct: 61 NGVTANNRTFVCILNVCSKRLDFELGRQIHACVVKG 96
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 104/208 (50%), Gaps = 13/208 (6%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QL+ I AQML P A+ YA + +PN Y++N +IR
Sbjct: 49 QLREIQAQML-----LHSVEKPNFLIPKAVE-LGDFNYASFLLSVTEEPNHYSFNYMIRG 102
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFE 151
++ + + + + S P+ FT FV A + + VG+++H G+
Sbjct: 103 LTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSSLFKVGLER 162
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DD IS+SLI YA CG + A VF I + VSWNSMISG+ E G + A++L+R+M
Sbjct: 163 DDH-ISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAKDAMDLFRKM 221
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
E E +PDE T+V +L ACA DL G
Sbjct: 222 EEEGFEPDERTLVSMLGACAHLGDLTTG 249
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 14/214 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ +H+ + D + + L + C L + YARK+FD+I +WN++I
Sbjct: 149 RSVHSSLFKVGLERDDHISHSLIMMYAKCGL-----VGYARKVFDEITDRVTVSWNSMIS 203
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV- 155
YS + + +F ++ + P+E TL ++ A A G+ + M +
Sbjct: 204 GYSEAGRAKDAMDLFRKM-EEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIG 262
Query: 156 ----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + LI Y CGDL A VF + KKD V+WN+MI+ + + G +A +L+ EM
Sbjct: 263 LSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEM 322
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
E V PD T+ VLSAC LE G + +H
Sbjct: 323 EKTGVSPDAGTLSTVLSACGSVGALELGKRIETH 356
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 104/221 (47%), Gaps = 14/221 (6%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
P+ TL G H LT + L+++ ++ + SKL T L+
Sbjct: 228 PDERTLVSMLGACAHLGDLTTGRLLEKM---AITKKIGLSTFLGSKLIT--MYGKCGDLD 282
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR++F+Q+ + + WN +I YS + + ++F +F ++ + P+ TL V+ A
Sbjct: 283 SARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEM-EKTGVSPDAGTLSTVLSAC 341
Query: 135 ARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+G+ I + ++ ++ L+ Y CG + A VF + K+ +WN
Sbjct: 342 GSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMPVKNEATWN 401
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+MI+ + G ++A+ L+ +M V P +VT + VLSAC
Sbjct: 402 AMITAYAHQGHAKEALLLFDQMP---VPPSDVTFIGVLSAC 439
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 187 SWNSMISGFVE-GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
S+N MI G E A+ LYR M+ +KPD T V AC K+ ++ G V S
Sbjct: 95 SFNYMIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSS 154
Query: 246 IEKNGIKMD 254
+ K G++ D
Sbjct: 155 LFKVGLERD 163
>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
Length = 1108
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 13/194 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SLE A +F ++ + N+ +W LI A + S ++F +F ++ S PN +TL +
Sbjct: 74 GSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAM 133
Query: 131 IKAAARPVQFRVGQAIHGM-FEDDL--------VISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ A A +G++IH M +E L ++ N++I+ YA CG A VF+ I
Sbjct: 134 LNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIP 193
Query: 182 KKDVVSWNSMISGFV-EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+KDVVSW +M + E F+ A+ ++REM ++ + P+ +T + L AC RD G
Sbjct: 194 EKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GT 250
Query: 241 WVSSHIEKNGIKMD 254
W+ S + + G+ D
Sbjct: 251 WLHSLLHEAGLGFD 264
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 85/161 (52%), Gaps = 6/161 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE AR +FD++ ++ +W ++ A + + + + +F ++ P++FTL +
Sbjct: 588 LEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEG-VIPDKFTLATTLD 646
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+G+ IH E D+ + N+L++ Y+ CGD A F + +D+VS
Sbjct: 647 TCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVS 706
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
WN M + + + G ++A+ L+R M++E VKPD++T L+
Sbjct: 707 WNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLN 747
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 25/241 (10%)
Query: 12 PRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALS 68
P PN T G T+ + +H+ + FDP + + L + C
Sbjct: 228 PLAPNVITFITALGA------CTSLRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCG-- 279
Query: 69 TFSSLEYARKMFDQIP---QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
E A +F + + +L +WN +I A + + IF +L PN
Sbjct: 280 ---DWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMR-PNSV 335
Query: 126 TLPFVIKA-AARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVM 179
TL ++ A AA V F + HG + D+V+ N++I YA CG + A+ VF
Sbjct: 336 TLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRR 395
Query: 180 IG-KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
I K DV+SWN+M+ + F K + + M + + P++V+ + +L+AC+ L+F
Sbjct: 396 IRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDF 455
Query: 239 G 239
G
Sbjct: 456 G 456
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 24/192 (12%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDE--PIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
E A +F IP+ ++ +W + AY+ P + IF +++ P PN T I
Sbjct: 183 EDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYP-DALRIFREMLLQ-PLAPNVITF---I 237
Query: 132 KAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKK--- 183
A R G +H + + D + N+LI+ Y CGD AY VF + +
Sbjct: 238 TALGACTSLRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQEL 297
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG---- 239
D+VSWN+MIS VE G A+ ++R + +E ++P+ VT++ +L+A A ++FG
Sbjct: 298 DLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAAS-GVDFGAARK 356
Query: 240 ----IWVSSHIE 247
IW S ++
Sbjct: 357 FHGRIWESGYLR 368
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 5/222 (2%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN--LYTWNTLIRA 97
++IH+ +L+ + S + + S+ A +F ++P P+ L TWN ++ A
Sbjct: 457 RKIHSLILTRRRDYVESSVATMLVS-MYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGA 515
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ-AIHGMFEDDLVI 156
Y+ +D ++F ++++ P+ + V+ + + +V + I +
Sbjct: 516 YAQNDRSKEAFGALMEML-QGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACL 574
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+LI + C +L A VF + DVVSW +M+S E F++ L+R M++E V
Sbjct: 575 ETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGV 634
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
PD+ T+ L C L G + + + + G++ D+ E
Sbjct: 635 IPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVE 676
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 82/169 (48%), Gaps = 6/169 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A F+ + +L +WN + AY+ + ++ ++F + P++ T + +
Sbjct: 692 ALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVK-PDKLTFSTTLNVSG 750
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ HG+ + D+ ++ L+ YA CG L A +F + VV N+
Sbjct: 751 GSALVSDGKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNA 810
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+I + GF E+A++++ +M+ E V+PD T+V ++SAC +E G
Sbjct: 811 IIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEG 859
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
E L + N LI+ Y CG L A+ +F + +++VVSW ++IS + G F +A L+R
Sbjct: 56 LEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFR 115
Query: 210 EMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
M +E + P+ T+V +L+ACA RDL G + + I + G++ + T
Sbjct: 116 TMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLEREST 163
>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
Length = 795
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 15/232 (6%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
N + KR+H+ ++ T + D + +++ C +E A +FD I PN+++W
Sbjct: 132 NLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCG-----DVEQAGNVFDSIQDPNVFSW 186
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+I AY+ + ++ + L + + P+ +T V+ A + +H
Sbjct: 187 TIIIAAYAQNGHCME-VLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATI 245
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
+ D + +LI+ Y CG L A+ VFV I KD+VSW+SMI+ F + G + AI
Sbjct: 246 SSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAI 305
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+L M++E V+P+ VT V VL A + ++G + + I + G D+
Sbjct: 306 QLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCL 357
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 115/228 (50%), Gaps = 15/228 (6%)
Query: 37 KQLKRIHAQMLS-TDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
++ K +HA +S T D + L+ C +LE A +F QI ++ +W+
Sbjct: 235 EEAKILHAATISSTGLDRDAAVGTALINLYGKCG-----ALEEAFGVFVQIDNKDIVSWS 289
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
++I A++ S + +S + L L+ PN T V++A F+ G+ IH
Sbjct: 290 SMIAAFAQSGQA-KSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQ 348
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ DD+ ++++L+ Y G + A +F ++DVVSW+SMI+G+ + +A+ L
Sbjct: 349 AGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSL 408
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+REMEV+ V+P+ VT V + ACA L G + + G+ D+
Sbjct: 409 FREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDV 456
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 99/196 (50%), Gaps = 8/196 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IHA+++ + D S L + +E AR +F+ + ++ +W+++I YS
Sbjct: 340 KEIHARIVQAGYSDDVCLTSALVK--MYCNWGWVETARSIFESSRERDVVSWSSMIAGYS 397
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
++ P ++ +F ++ + PN T I A A R G +H + D+
Sbjct: 398 QNESPARALSLFREMEVDGVQ-PNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDV 456
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ +L++ Y CG L A VF+ + KK++++W S+ + + G ++++L ME++
Sbjct: 457 PVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQ 516
Query: 215 NVKPDEVTMVVVLSAC 230
+KPD + V +L +C
Sbjct: 517 GMKPDGIVFVAILVSC 532
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 11/225 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTF---SSLEYARKMFDQIPQPNLYTWNTLIR 96
KR+H ++ D L + + + A +FD++ N+ W +LI
Sbjct: 30 KRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLIS 89
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL-PFVIKAAARPVQFRVGQAIHG-----MF 150
A++ + + ++F +++ S P+ T ++K + R G+ +H +
Sbjct: 90 AFTFAGHFGDAMVLFRKMLL-SGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGY 148
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E D ++ N ++ Y CGD+ A VF I +V SW +I+ + + G + + L
Sbjct: 149 EGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSR 208
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFG-IWVSSHIEKNGIKMD 254
M VKPD T VL AC LE I ++ I G+ D
Sbjct: 209 MNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRD 253
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 143 GQAIHGMF----------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
G+ +HG+ D+ ++ N +I Y CG +A VF + ++VV+W S+I
Sbjct: 29 GKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLI 88
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMV-VVLSACAKKRDLEFGIWVSSHIEKNGI 251
S F G F A+ L+R+M + V PD +T ++L ++R+L+ G V SHI + G
Sbjct: 89 SAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGY 148
Query: 252 KMD 254
+ D
Sbjct: 149 EGD 151
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 39/216 (18%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQ+ +I AQ+++ F ++ Y KL T CA T + YAR++FDQIP PN+ WN++ R
Sbjct: 115 KQVHQIQAQIIANGFQYNEYITPKLVTICA--TLKRMTYARQLFDQIPDPNIALWNSMFR 172
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-------- 148
Y+ S+ + +F Q+ PN FT P V+K+ + G+ +H
Sbjct: 173 GYAQSESYREVVFLFFQM-KGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFR 231
Query: 149 ----------------------------MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
MFE ++V S+I+ Y + DL A +F +
Sbjct: 232 GNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLA 291
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
++DVV WN M+SG++EGG +A +L+ EM +V
Sbjct: 292 PERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDV 327
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 92/177 (51%), Gaps = 5/177 (2%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+T ++E +F+++P+ N+++WN LI Y+ + + F +++ S PN+ TL
Sbjct: 338 ATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 397
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A AR +G+ +H + ++ + N+L+ YA CG + A VF +
Sbjct: 398 VTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDT 457
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
KD++SWN++I G A+ L+ +M+ KPD +T + +L AC +E G
Sbjct: 458 KDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG 514
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 90/186 (48%), Gaps = 36/186 (19%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+ L AR++FD P+ ++ WN ++ Y + +++ +F ++ PN
Sbjct: 279 ADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEM-------PNR------ 325
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
D++ N+++ YA G++ +F + ++++ SWN+
Sbjct: 326 ----------------------DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNA 363
Query: 191 MISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+I G+ G F + + ++ M E +V P++ T+V VLSACA+ L+ G WV + E +
Sbjct: 364 LIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESS 423
Query: 250 GIKMDL 255
G+K ++
Sbjct: 424 GLKGNV 429
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%)
Query: 144 QAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
Q I F+ + I+ L+ A + A +F I ++ WNSM G+ + + +
Sbjct: 123 QIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYRE 182
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+ L+ +M+ +++P+ T VVL +C K L G V + K G +
Sbjct: 183 VVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFR 231
>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 970
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 115/211 (54%), Gaps = 14/211 (6%)
Query: 40 KRIHAQMLS--TDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++IH Q++S T D +++ T A+ S + +R +FD + NL+ WN +I +
Sbjct: 104 RKIH-QLVSGSTRLRNDDVLCTRIITMYAMC--GSPDDSRFVFDALRSKNLFQWNAVISS 160
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS ++ + F++++ + P+ FT P VIKA A +G A+HG+ +
Sbjct: 161 YSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVE 220
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N+L+ FY G + A +F ++ ++++VSWNSMI F + GF E++ L EM
Sbjct: 221 DVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMM 280
Query: 213 VENVK----PDEVTMVVVLSACAKKRDLEFG 239
EN PD T+V VL CA++R++ G
Sbjct: 281 EENGDGAFMPDVATLVTVLPVCAREREIGLG 311
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 112/216 (51%), Gaps = 11/216 (5%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNL 88
H FL + LK +H L +F ++ A+ A SL YA+++F I +
Sbjct: 407 HESFLPS---LKELHCYSLKQEFVYNELVANAFVASYA--KCGSLSYAQRVFHGIRSKTV 461
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+WN LI ++ S++P S LQ+ S P+ FT+ ++ A ++ R+G+ +HG
Sbjct: 462 NSWNALIGGHAQSNDPRLSLDAHLQMKI-SGLLPDSFTVCSLLSACSKLKSLRLGKEVHG 520
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
E DL + S++ Y CG+L +F + K +VSWN++I+G+++ GF ++
Sbjct: 521 FIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDR 580
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
A+ ++R+M + ++ ++M+ V AC+ L G
Sbjct: 581 ALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 616
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 106/199 (53%), Gaps = 12/199 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ T D + + L + F + A ++FD +P+ NL +WN++IR +S +
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGF--VTDALQLFDIMPERNLVSWNSMIRVFSDN 266
Query: 102 DEPIQSFMIFLQLVY---NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDD 153
+SF++ +++ + + P+ TL V+ AR + +G+ +HG + +
Sbjct: 267 GFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKE 326
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
LV++N+L+ Y+ CG + A +F M K+VVSWN+M+ GF G ++ R+M
Sbjct: 327 LVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLA 386
Query: 214 --ENVKPDEVTMVVVLSAC 230
E+VK DEVT++ + C
Sbjct: 387 GGEDVKADEVTILNAVPVC 405
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
+ +FD + +L +WNT+I Y + P ++ +F Q+V +P V A +
Sbjct: 551 QALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMP-VFGACSL 609
Query: 137 PVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
R+G+ H + EDD I+ SLI YA G + + VF + +K SWN+M
Sbjct: 610 LPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAM 669
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
I G+ G ++AI+L+ EM+ PD++T + VL+AC
Sbjct: 670 IMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTAC 708
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 27/226 (11%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
R+ +++ + D YS T A+ +F N+ +WNT++ +S+
Sbjct: 322 RLDKELVLNNALMDMYSKCGCITN-----------AQMIFKMNNNKNVVSWNTMVGGFSA 370
Query: 101 SDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVG----------QAIHGM 149
+ +F + Q++ +E T+ A PV F ++
Sbjct: 371 EGDTHGTFDVLRQMLAGGEDVKADEVTI-----LNAVPVCFHESFLPSLKELHCYSLKQE 425
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F + +++N+ + YA CG L+ A VF I K V SWN++I G + +++ +
Sbjct: 426 FVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 485
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+M++ + PD T+ +LSAC+K + L G V I +N ++ DL
Sbjct: 486 QMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 531
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
L +++A+ + +G+ IH + +D V+ +I YA+CG + VF
Sbjct: 86 ALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA 145
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEF 238
+ K++ WN++IS + +++ +E + EM ++ PD T V+ ACA D+
Sbjct: 146 LRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGI 205
Query: 239 GIWVSSHIEKNGIKMDL 255
G+ V + K G+ D+
Sbjct: 206 GLAVHGLVVKTGLVEDV 222
>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
Length = 485
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 104/201 (51%), Gaps = 8/201 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++ +R+H+++ D + L S+E AR F++I +PN+ +W+ ++
Sbjct: 27 EEGRRVHSRVAGAGLEVDVIVGTALVN--MYGKCQSVEEARAAFEKISRPNVVSWSAMLA 84
Query: 97 AYSSSDEPIQSFMIFLQL-VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
AY+ + + ++ ++ PN T ++ A + G+ IH F
Sbjct: 85 AYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGF 144
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ DLV+ N+L++FY CG L A VF + ++DV+SW+SMIS F + G ++A+ELY
Sbjct: 145 DTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHR 204
Query: 211 MEVENVKPDEVTMVVVLSACA 231
M E PD++ + VL AC+
Sbjct: 205 MLSEGTLPDDIIFISVLFACS 225
>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like, partial [Cucumis sativus]
Length = 472
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 122/248 (49%), Gaps = 19/248 (7%)
Query: 11 IPRHPNPTTLTVNNGH------QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTP 64
+P PN +L +++ H + FL ++ IHA ++ + D + + L
Sbjct: 4 LPLQPN-ASLPISHNHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHF 62
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
L + A +FD IP P++ +W ++I S ++ FL + PN
Sbjct: 63 YILD--GDVSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMNVR----PNS 116
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
TL + + ++G+AIHG+ E+++++ N+L+ FY C L A +F
Sbjct: 117 TTLVTALSTCSSLRCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEK 176
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEF 238
+ K+DVVSW +MI G+ + G E+A+ +++ M V P+E T+V VLSAC+ L
Sbjct: 177 MPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHL 236
Query: 239 GIWVSSHI 246
G WV S+I
Sbjct: 237 GQWVHSYI 244
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 11/240 (4%)
Query: 9 ISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS 68
+S+ PN TTL L K + + + L+ + + + CA
Sbjct: 108 LSMNVRPNSTTLVTALSTCSSLRCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAY- 166
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
L A +F+++P+ ++ +W T+I Y+ S ++ +F +V+ PNE TL
Sbjct: 167 ----LRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLV 222
Query: 129 FVIKAAARPVQFRVGQAIHGMFED--DLVI----SNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A + +GQ +H D++I N+LI+ Y CG++ MA +F
Sbjct: 223 NVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKATEH 282
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
KD+VSW+++ISG G ++A L+ M V + PD+VT + +LSAC+ + G+ V
Sbjct: 283 KDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGISPDDVTFLGLLSACSHGGLINQGMMV 342
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 39/216 (18%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQ+ +I AQ+++ F ++ Y KL T CA T + YAR++FDQIP PN+ WN++ R
Sbjct: 52 KQVHQIQAQIIANGFQYNEYITPKLVTICA--TLKRMTYARQLFDQIPDPNIALWNSMFR 109
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-------- 148
Y+ S+ + +F Q+ PN FT P V+K+ + G+ +H
Sbjct: 110 GYAQSESYREVVFLFFQM-KGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFR 168
Query: 149 ----------------------------MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
MFE ++V S+I+ Y + DL A +F +
Sbjct: 169 GNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLA 228
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
++DVV WN M+SG++EGG +A +L+ EM +V
Sbjct: 229 PERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDV 264
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 92/177 (51%), Gaps = 5/177 (2%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+T ++E +F+++P+ N+++WN LI Y+ + + F +++ S PN+ TL
Sbjct: 275 ATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 334
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A AR +G+ +H + ++ + N+L+ YA CG + A VF +
Sbjct: 335 VTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDT 394
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
KD++SWN++I G A+ L+ +M+ KPD +T + +L AC +E G
Sbjct: 395 KDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG 451
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 105/214 (49%), Gaps = 7/214 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H ++ F +P+ + L S ++ A K+F ++ + N+ W ++I Y
Sbjct: 156 EQVHCFLIKCGFRGNPFVGTTLID--MYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYI 213
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS 159
S + + + +F N ++ V+ R + H M D++ N+
Sbjct: 214 LSADLVSARRLFDLAPERDVVLWNIMVSGYI--EGGDMVEAR--KLFHEMPNRDVMFWNT 269
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE-NVKP 218
++ YA G++ +F + ++++ SWN++I G+ G F + + ++ M E +V P
Sbjct: 270 VLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPP 329
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
++ T+V VLSACA+ L+ G WV + E +G+K
Sbjct: 330 NDATLVTVLSACARLGALDLGKWVHVYAESSGLK 363
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%)
Query: 144 QAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
Q I F+ + I+ L+ A + A +F I ++ WNSM G+ + + +
Sbjct: 60 QIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYRE 119
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+ L+ +M+ +++P+ T VVL +C K L G V + K G +
Sbjct: 120 VVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFR 168
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 11/201 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q+ +IHAQ+++T+ D ++AS+L T + + YA +F QI QPN + NT+++
Sbjct: 26 QILQIHAQLITTNLISDTFAASRLLDSVVSKTLN-VNYAELVFAQIHQPNSFICNTMVKC 84
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFED 152
Y+ S P ++ + ++ + +T PFV+KA G + G F
Sbjct: 85 YTESSTPERALRFYAEM-RRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGG 143
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N LI Y CG+ A VF +KD+VSWNSM+ G+V G E A ++ EM
Sbjct: 144 DVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMP 203
Query: 213 VENVKPDEVTMVVVLSACAKK 233
+ D V+ +++ KK
Sbjct: 204 ----ERDVVSWSIMIDGYGKK 220
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 97/189 (51%), Gaps = 10/189 (5%)
Query: 52 FFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS 107
FFD L + ++ + +E AR++FD++ Q N+ +W+ +I Y+ + ++
Sbjct: 230 FFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEA 289
Query: 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIH 162
+F Q++ P+ ++ + A ++ G+ IH + D+V+ +L+
Sbjct: 290 LNLFRQMLCQGIK-PDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVD 348
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
Y CG A +F + +++VVSWN MI G GF ++A+E + +ME+E + D++
Sbjct: 349 MYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLL 408
Query: 223 MVVVLSACA 231
+ VL AC+
Sbjct: 409 FLGVLMACS 417
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 94/188 (50%), Gaps = 34/188 (18%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E A+ MFD++P+ ++ +W+ +I Y + +F ++P
Sbjct: 190 GEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFD------------SMP-- 235
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
DLV NS+I YA G++ +A +F + +K+V+SW+
Sbjct: 236 --------------------TRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSI 275
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI G+ + ++A+ L+R+M + +KPD V++V +SAC++ L+ G W+ ++++N
Sbjct: 276 MIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNR 335
Query: 251 IKMDLTFE 258
+ +D+ +
Sbjct: 336 MLLDIVVQ 343
>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 606
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 114/207 (55%), Gaps = 11/207 (5%)
Query: 40 KRIHAQMLSTDFFFD-PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
K++HA +++ F + P + L C S A+++F ++ Q + TWNTLI +
Sbjct: 230 KQVHAAVINHGFESNLPVMNAILDMYCRCRCASE---AKQLFGEMTQKDTITWNTLIAGF 286
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ D +S IF Q+V + + PN FT VI A A GQ +HG +++
Sbjct: 287 ETLD-SYESLCIFSQMV-SEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNN 344
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L +SN+LI YA CG++A ++ +F + ++VSW SM+ G+ G ++A++L+ EM
Sbjct: 345 LELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVG 404
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGI 240
+KPD++ + VLSAC+ ++ G+
Sbjct: 405 SGIKPDKIVFMAVLSACSHAGLVDEGL 431
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 105/220 (47%), Gaps = 10/220 (4%)
Query: 45 QMLSTDFFFDPYSASKLFTPCALSTF--SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
+ + D F+P + L T S F S E A +FD++P ++ W ++I Y+S +
Sbjct: 27 RCIQNDTPFNPKDLTGLTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCN 86
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------EDDLVI 156
+++ +F ++ + PN FT+ V+KA G+ +HG+ + +
Sbjct: 87 HHSRAWNVFTNMLRDGVK-PNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYV 145
Query: 157 SNSLIHFYAVCGD-LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
N+L+ YA C D + A VF IG K+ VSW ++I+G+ + ++R+M +E
Sbjct: 146 DNALMDMYATCCDSMDNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEE 205
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ + + +SACA G V + + +G + +L
Sbjct: 206 GELSPFSFSIAVSACASIGSSNLGKQVHAAVINHGFESNL 245
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 136 RPVQFRVGQAIHGMFED------DLV-ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
RP+ F V ++ + D DL ++ LI Y G A+ +F + +DV++W
Sbjct: 16 RPIPFSVQNSLRCIQNDTPFNPKDLTGLTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAW 75
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
SMI+G+ +A ++ M + VKP+ T+ VL AC + L G
Sbjct: 76 TSMITGYTSCNHHSRAWNVFTNMLRDGVKPNAFTVSAVLKACKSLKALLCG 126
>gi|255541017|ref|XP_002511573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550688|gb|EEF52175.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 954
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 115/222 (51%), Gaps = 8/222 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ IH +L T F D S LFT S S+ + K+F+QIP + +W ++I ++
Sbjct: 471 REIHCYILKTGFVLDLSVGSSLFT--MYSKCGSIGDSYKVFEQIPVKDNISWTSMISGFT 528
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDL 154
Q+F + +++ P++ T ++ AA+ + G+ IHG D+
Sbjct: 529 EHGHAYQAFELLRKMLTERSK-PDQTTFSAILSAASSIHSLQKGKEIHGYAYRARLGDEA 587
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ +L++ Y+ CG L A +F ++ KD VS +S++SG+ + G+ E+A+ L+ EM +
Sbjct: 588 LVGGALVNMYSKCGALESARKMFDLLAVKDQVSCSSLVSGYAQNGWLEEALLLFHEMLIS 647
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
N D + VL A A L+FG + +H+ K G+ D++
Sbjct: 648 NFTIDSFAVSSVLGAIAGLNRLDFGTQLHAHLVKLGLDSDVS 689
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 15/235 (6%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCA-LST 69
+ N T+T PHF+ K+ +IH +L T ++ DP + L A L
Sbjct: 346 MKEETNKFTVTTVISACAKPHFI---KEAIQIHCWILKTGYYLDPVVGAALINMYAKLHA 402
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
SS E + + + P + W +I +++ + + QS + L + P++F L
Sbjct: 403 ISSSEMVFREMEGVKNPGI--WTIMISSFAKNQDS-QSAIDLLLKLLQQGLRPDKFCLSS 459
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ +G+ IH F DL + +SL Y+ CG + +Y VF I KD
Sbjct: 460 VLSVID---SLYLGREIHCYILKTGFVLDLSVGSSLFTMYSKCGSIGDSYKVFEQIPVKD 516
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+SW SMISGF E G +A EL R+M E KPD+ T +LSA + L+ G
Sbjct: 517 NISWTSMISGFTEHGHAYQAFELLRKMLTERSKPDQTTFSAILSAASSIHSLQKG 571
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +LE ARKMFD + + + ++L+ Y+ + ++ ++F +++ S + + F +
Sbjct: 598 SKCGALESARKMFDLLAVKDQVSCSSLVSGYAQNGWLEEALLLFHEMLI-SNFTIDSFAV 656
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A + G +H + D+ + +SL+ Y+ CG + + F I
Sbjct: 657 SSVLGAIAGLNRLDFGTQLHAHLVKLGLDSDVSVGSSLVTVYSKCGSIEDCWKAFNQIDD 716
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
D++SW +MI+ + G +A+++Y +M E ++PD VT V VLSAC+ +E G
Sbjct: 717 ADLISWTTMIASCAQHGKGVEALKIYEQMRREGIRPDSVTFVGVLSACSHANLVEEG 773
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 17/223 (7%)
Query: 31 HFLTNQ--------KQLKRIHAQMLSTDFF-FDPYSASKLFTPCALSTFSSLEYARKMFD 81
HF TN ++ K IH ++ T F + A+ L S +L YA K+FD
Sbjct: 52 HFFTNYIKSADHTVEETKVIHTHLIKTALFNSNTVVANSLLDWYCKS--GALFYALKVFD 109
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
IP N+ +WN +I Y+ + S+ F +++ S + PN+ T V+ A A
Sbjct: 110 TIPNKNVISWNVIISGYNRNSLFEDSWR-FFSMMHFSGFDPNDITYGCVLSACAALETPN 168
Query: 142 VGQAIHGMFEDDLVISNS-----LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
+G+ ++ + + SN +I A G A VF + ++VV WNS+ISG V
Sbjct: 169 LGEQVYSLATKNGFYSNGHVRAGMIDLLARNGRFGDALRVFYDVSCENVVCWNSIISGAV 228
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ G + A++++ +M V P+ T +L+ACA ++E G
Sbjct: 229 KSGEYWIALDIFYQMSRRFVVPNSFTFSSILTACASLEEVELG 271
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 9/185 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF--PNEFTLPFVIKA 133
A ++F + N+ WN++I S E + IF Q+ S F PN FT ++ A
Sbjct: 205 ALRVFYDVSCENVVCWNSIISGAVKSGEYWIALDIFYQM---SRRFVVPNSFTFSSILTA 261
Query: 134 AARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A + +G+ I G D+ + ++++ YA CGD+ A F + ++VVSW
Sbjct: 262 CASLEEVELGKGIQGWVIKCCAKDIFVGTAIVNMYAKCGDIVDAVKEFSRMPVRNVVSWT 321
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+++SGF++ A++ ++EM + ++ T+ V+SACAK ++ I + I K
Sbjct: 322 AIVSGFIKRDDSISALKFFKEMRKMKEETNKFTVTTVISACAKPHFIKEAIQIHCWILKT 381
Query: 250 GIKMD 254
G +D
Sbjct: 382 GYYLD 386
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%)
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+F + V++NSL+ +Y G L A VF I K+V+SWN +ISG+ FE +
Sbjct: 79 ALFNSNTVVANSLLDWYCKSGALFYALKVFDTIPNKNVISWNVIISGYNRNSLFEDSWRF 138
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ M P+++T VLSACA G V S KNG
Sbjct: 139 FSMMHFSGFDPNDITYGCVLSACAALETPNLGEQVYSLATKNG 181
>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
Length = 700
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 99/182 (54%), Gaps = 7/182 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD I ++ +WN++++AY + + + +V PN TL V+ A
Sbjct: 171 ARRVFDGISHRDVVSWNSMVKAYERAGMVAEVEGMLRSMVTEGAVAPNGVTLAVVLTACR 230
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+G+ + GM E D +I ++L+ Y CG++A A VF I KDVV+WN
Sbjct: 231 DAGNLVLGRWVEEWVRSAGM-EVDSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVVAWN 289
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+MI+G+ + G +AI L+ M + PD++T+V VLS+CA L+ G+ + ++ +
Sbjct: 290 AMITGYAQNGMSNEAIALFHSMREAGLCPDKITLVGVLSSCAAVGALKLGVELDTYAMRR 349
Query: 250 GI 251
G+
Sbjct: 350 GL 351
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 84 PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRV 142
P P +T+N IR ++SS P S +FL ++ P+ +TLPF++ AAAR +
Sbjct: 77 PAPTAFTYNVTIRLFASS-RPDTSLRLFLSMLRAEVRVRPDAYTLPFLLLAAARCPAPAL 135
Query: 143 GQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
++ H + E D +SLI Y+ D A VF I +DVVSWNSM+ +
Sbjct: 136 ARSAHALLEKIGLGDHDHTVHSLITMYSCLDDHLAARRVFDGISHRDVVSWNSMVKAYER 195
Query: 198 GGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
G + + R M E V P+ VT+ VVL+AC +L G WV + G+++D
Sbjct: 196 AGMVAEVEGMLRSMVTEGAVAPNGVTLAVVLTACRDAGNLVLGRWVEEWVRSAGMEVD 253
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 7/170 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD I ++ WN +I Y+ + ++ +F + + P++ TL V+ + A
Sbjct: 273 ARRVFDGIRHKDVVAWNAMITGYAQNGMSNEAIALFHSM-REAGLCPDKITLVGVLSSCA 331
Query: 136 RPVQFRVG-----QAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
++G A+ +++ + +L+ YA CGDL A VF + K+ SWN+
Sbjct: 332 AVGALKLGVELDTYAMRRGLYNNVYVGTALVDMYAKCGDLEKATHVFGKMPFKNEASWNA 391
Query: 191 MISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFG 239
+I G G AI+ + M E ++PD++T + VLSAC LE+G
Sbjct: 392 LICGLAFNGRGYDAIQQFELMRDEKGLQPDDITFIGVLSACVHAGLLEYG 441
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 107/204 (52%), Gaps = 20/204 (9%)
Query: 38 QLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
+ K+IH L D + ++L+ C + + AR++FD+IP P++ WN +
Sbjct: 26 EAKKIHQHFLKNTSNADSSVLHKLTRLYLSC-----NQVVLARRLFDEIPNPSVILWNQI 80
Query: 95 IRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG--- 148
IRAY+ + D I + L L PN++T PFV+KA + + G IH
Sbjct: 81 IRAYAWNGPFDGAIDLYHSMLHLGVR----PNKYTYPFVLKACSGLLAIEDGVEIHSHAK 136
Query: 149 MF--EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
MF E D+ + +L+ FYA CG L A +F + +DVV+WN+MI+G G + A++
Sbjct: 137 MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQ 196
Query: 207 LYREMEVENVKPDEVTMVVVLSAC 230
L +M+ E + P+ T+V VL C
Sbjct: 197 LIMQMQEEGICPNSSTIVGVLPTC 220
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
L T L YARK+FD + N +W+ +I Y +SD ++ IF +++ S P+ T
Sbjct: 217 LPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIF-RMMQLSGIDPDLTT 275
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ V+ A + + G HG F D +I N+LI Y+ CG ++ A VF +
Sbjct: 276 MLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD 335
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ D+VSWN+MI G+ G +A+ L+ ++ +KPD++T + +LS+C+
Sbjct: 336 RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 385
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 52/219 (23%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSS----LEYARKMFDQIPQPNLYTWNTLIRA- 97
HA+M + S +F AL F + L A+++F + ++ WN +I
Sbjct: 134 HAKMFGLE--------SDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGC 185
Query: 98 --YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV 155
Y D+ +Q M + PN
Sbjct: 186 SLYGLCDDAVQLIM----QMQEEGICPN-------------------------------- 209
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
S++++ C L A +F ++G ++ VSW++MI G+V ++A++++R M++
Sbjct: 210 -SSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSG 268
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ PD TM+ VL AC+ L+ G ++ G D
Sbjct: 269 IDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATD 307
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D + + L Y C + +A +F I V+ WN +I + G F+ AI+LY M
Sbjct: 42 DSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSML 101
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V+P++ T VL AC+ +E G+ + SH + G++ D+
Sbjct: 102 HLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDV 144
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 93/169 (55%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ + ++ AR +FD + + + WN +I Y+ P + ++F Q++ N+ PNE T+
Sbjct: 17 AKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQML-NAKVRPNEVTV 75
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A + G+ +H E++ + + SLI Y+ CG L A VF I
Sbjct: 76 LAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISN 135
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
KDVV+WNSM+ G+ GF + A+ L++EM + +P ++T + VL+AC+
Sbjct: 136 KDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACS 184
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%)
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
M E LV ++I YA G + A +F + ++D + WN MI G+ + G + + L+
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
R+M V+P+EVT++ VLSAC + LE G WV S+IE NGI +++
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINV 107
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 29/179 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S SLE AR +F++I ++ WN+++ Y+ + +F ++ Y P + T
Sbjct: 118 SKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCM-IGYQPTDITF 176
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
V+ A + G +D+ I + H+ C+ ++G+
Sbjct: 177 IGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHY----------GCMVNLLGR----- 221
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G+ E+A EL + ME++ D V +L AC ++ G ++ ++
Sbjct: 222 ----------AGYLEEAYELVKNMEIDQ---DPVLWGTLLGACRLHGNIALGEQIAEYL 267
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 106/195 (54%), Gaps = 8/195 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH L ++F ++ L T S + +E ARK+FD+ P+ +L +WN +I Y+ +
Sbjct: 341 IHGYSLKSNFLSHTSVSTALTT--VYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQN 398
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
+ +F ++ NS + PN T+ ++ A A+ +G+ +H + FE + +
Sbjct: 399 GLTEDAISLFREM-QNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYV 457
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S +LI YA CG +A A +F + KK+ V+WN+MISG+ G ++A+ ++ EM +
Sbjct: 458 STALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGI 517
Query: 217 KPDEVTMVVVLSACA 231
P VT + VL AC+
Sbjct: 518 APTPVTFLCVLYACS 532
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 117/223 (52%), Gaps = 8/223 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T+ L + HAQ++ F D +KL LS ++ YAR +F + +P+++ +N
Sbjct: 31 TSISHLAQTHAQIVLHGFRNDISLLTKLTQ--RLSDLGAIYYARDIFLSVQRPDVFLFNV 88
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
L+R +S ++ P S +F L ++ PN T F I AA+ R G IHG
Sbjct: 89 LMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVD 148
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ +L++ ++++ Y + A VF + +KD + WN+MISG+ + + ++I+++
Sbjct: 149 GCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVF 208
Query: 209 REMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
R++ E+ + D T++ +L A A+ ++L G+ + S K G
Sbjct: 209 RDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTG 251
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 9/206 (4%)
Query: 41 RIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+IH+ T + Y + L++ C ++ A +F + +P++ +N +I
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCG-----KIKMASTLFREFRRPDIVAYNAMIHG 296
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV-GQAIHGMFEDDLVI 156
Y+S+ E S +F +L+ + + + V + + + + G ++ F +
Sbjct: 297 YTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSV 356
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S +L Y+ ++ A +F +K + SWN+MISG+ + G E AI L+REM+
Sbjct: 357 STALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEF 416
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWV 242
P+ VT+ +LSACA+ L G WV
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWV 442
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 52/241 (21%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQL------KRIHAQMLSTDFFFDPYSASKL---FTPC 65
PNP T+T L+ QL K +H + STDF Y ++ L + C
Sbjct: 418 PNPVTITC---------ILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKC 468
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
S+ AR++FD +P+ N TWNT+I Y ++ IF +++ NS P
Sbjct: 469 G-----SIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEML-NSGIAPTPV 522
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
T V+ A + G+ ++ I NS+IH Y + CV ++G+
Sbjct: 523 TFLCVLYACSHA----------GLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGR--- 569
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
G ++A++ M ++ P +L AC +D VS
Sbjct: 570 ------------AGHLQRALQFIEAMPIQ---PGPSVWETLLGACRIHKDTNLARTVSEK 614
Query: 246 I 246
+
Sbjct: 615 L 615
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 46/256 (17%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K LK +HA +L D Y +K+ F + Y+ ++F Q +PN++ +NT+I
Sbjct: 24 KHLKHVHAALLRLGLDEDSYLLNKVLRFSF--NFGNTNYSHRIFHQTKEPNIFLFNTMIH 81
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----E 151
+D +S I+ + P+ FT PF++KA AR + ++G +HG+ E
Sbjct: 82 GLVLNDSFQESIEIYHSM-RKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCE 140
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR-- 209
D ++ SL+ Y CG + A+ VF I +K+V +W ++ISG++ G +AI+++R
Sbjct: 141 SDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRA 200
Query: 210 ------------------------------------EMEVENVKPDEVTMVVVLSACAKK 233
+M E +PD MV VL ACA+
Sbjct: 201 CSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARL 260
Query: 234 RDLEFGIWVSSHIEKN 249
LE G W S+ +++N
Sbjct: 261 GALELGNWASNLMDRN 276
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +FD + + ++ +W+++I+ Y+S+ P ++ +F +++ N + P+ + + V+ A A
Sbjct: 200 ACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKML-NEGFRPDCYAMVGVLCACA 258
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R +G + F + V+ +LI YA CG + A+ VF + KKD+V WN+
Sbjct: 259 RLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNA 318
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
ISG G + A L+ +ME ++PD T V +L AC
Sbjct: 319 AISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCAC 358
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
G+ ED ++ N ++ F G+ ++ +F + ++ +N+MI G V F+++IE+
Sbjct: 37 GLDEDSYLL-NKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEI 95
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
Y M E + PD T +L ACA+ D + GI + + K G + D
Sbjct: 96 YHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESD 142
>gi|449458139|ref|XP_004146805.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Cucumis sativus]
Length = 677
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 102/180 (56%), Gaps = 6/180 (3%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
K+FD+IP+ L + LIRAY S++ + F F +V + P+++ +P ++KA +R
Sbjct: 123 KVFDEIPERTLPAYAALIRAYCRSEKWNELFAAFRSMV-DEGILPDKYLVPTILKACSRR 181
Query: 138 VQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
+ G+ HG D+VI N+L+ FY CGDL+ + VF + +KDVVSW +++
Sbjct: 182 QMVKTGKMAHGYAIRKRMVSDIVIENALMDFYGNCGDLSSSINVFDSMSEKDVVSWTALV 241
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
S ++E G +A+E++ M+ +KPD ++ ++S A+ + + +++ G++
Sbjct: 242 SAYIEEGLLNEAMEVFHSMQSSGLKPDLISWNALVSGFARYGETNTALTYLEAMQEEGLR 301
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 14/190 (7%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSD------EPIQSFMIFLQLVYNS---PYFPNE 124
E M + PN+ + N L+ + S E Q+ + L+ + P PN
Sbjct: 461 ELLSDMLQENLVPNVISLNVLVSGFQQSGLNYEALELCQTMLCTGSLLNKTIAFPVIPNT 520
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
TL + A A G+ IHG F ++ IS++LI+ YA CGD+ A VF
Sbjct: 521 VTLTAALAACASLNLLHKGKEIHGYMLRNYFVNNYFISSALINMYAKCGDIDSAIQVFSR 580
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
I ++VV WN++I+G + + A+EL+ +M VE +KP T ++L A +++ DL+
Sbjct: 581 IKNRNVVCWNALIAGLLRTMQHKMAVELFCQMLVEGIKPSSATFSILLPALSERADLKVR 640
Query: 240 IWVSSHIEKN 249
+ S+I K+
Sbjct: 641 RQLHSYIIKS 650
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
T ++L Y M ++ +P + +WN +I + + +F+ ++ P PN T+
Sbjct: 285 TNTALTYLEAMQEEGLRPRVNSWNGVISGCVQNGYFKDALDVFINMLL-FPENPNSVTVA 343
Query: 129 FVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
++ A A +G+A+H ++ + SL+ Y+ CG A +F KK
Sbjct: 344 SILPACAGLRDLGLGRAVHAYALKCELCTNIYVEGSLVDMYSKCGQDDRAEEIFAKAEKK 403
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
++ WN +I+ ++ G A+E +R M+ +KPD VT +L+ AK
Sbjct: 404 NITLWNEIIATYMNQGKNSWALEHFRSMQHHGLKPDVVTYNTLLAGYAK 452
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD----VVSWNSMISGFVEGGFFEKAIELY 208
DL+ N+L+ +A G+ A + ++ V SWN +ISG V+ G+F+ A++++
Sbjct: 268 DLISWNALVSGFARYGETNTALTYLEAMQEEGLRPRVNSWNGVISGCVQNGYFKDALDVF 327
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
M + P+ VT+ +L ACA RDL G V ++ K
Sbjct: 328 INMLLFPENPNSVTVASILPACAGLRDLGLGRAVHAYALK 367
>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
Length = 1702
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 116/214 (54%), Gaps = 14/214 (6%)
Query: 40 KRIHAQMLS--TDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++IH Q++S T D +++ T A+ S + +R +FD + NL+ WN +I +
Sbjct: 459 RKIH-QLVSGSTRLRNDDVLCTRIITMYAMC--GSPDDSRFVFDALRSKNLFQWNAVISS 515
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS ++ + F++++ + P+ FT P VIKA A +G A+HG+ +
Sbjct: 516 YSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVE 575
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N+L+ FY G + A +F ++ ++++VSWNSMI F + GF E++ L EM
Sbjct: 576 DVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMM 635
Query: 213 VENVK----PDEVTMVVVLSACAKKRDLEFGIWV 242
EN PD T+V VL CA++R++ G V
Sbjct: 636 EENGDGAFMPDVATLVTVLPVCAREREIGLGKGV 669
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 113/216 (52%), Gaps = 11/216 (5%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNL 88
H FL + LK +H L +F ++ A+ + + SL YA+++F I +
Sbjct: 762 HESFLPS---LKELHCYSLKQEFVYNELVANAFVA--SYAKCGSLSYAQRVFHGIRSKTV 816
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+WN LI ++ S++P S LQ+ S P+ FT+ ++ A ++ R+G+ +HG
Sbjct: 817 NSWNALIGGHAQSNDPRLSLDAHLQMKI-SGLLPDSFTVCSLLSACSKLKSLRLGKEVHG 875
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
E DL + S++ Y CG+L +F + K +VSWN++I+G+++ GF ++
Sbjct: 876 FIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDR 935
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
A+ ++R+M + ++ ++M+ V AC+ L G
Sbjct: 936 ALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 971
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 106/199 (53%), Gaps = 12/199 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ T D + + L + T + A ++FD +P+ NL +WN++IR +S +
Sbjct: 564 VHGLVVKTGLVEDVFVGNALVS--FYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDN 621
Query: 102 DEPIQSFMIFLQLVY---NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDD 153
+SF++ +++ + + P+ TL V+ AR + +G+ +HG + +
Sbjct: 622 GFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKE 681
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
LV++N+L+ Y+ CG + A +F M K+VVSWN+M+ GF G ++ R+M
Sbjct: 682 LVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLA 741
Query: 214 --ENVKPDEVTMVVVLSAC 230
E+VK DEVT++ + C
Sbjct: 742 GGEDVKADEVTILNAVPVC 760
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
+ +FD + +L +WNT+I Y + P ++ +F Q+V +P V A +
Sbjct: 906 QALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMP-VFGACSL 964
Query: 137 PVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
R+G+ H + EDD I+ SLI YA G + + VF + +K SWN+M
Sbjct: 965 LPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAM 1024
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
I G+ G ++AI+L+ EM+ PD++T + VL+AC
Sbjct: 1025 IMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTAC 1063
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 25/225 (11%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
R+ +++ + D YS T A+ +F N+ +WNT++ +S+
Sbjct: 677 RLDKELVLNNALMDMYSKCGCITN-----------AQMIFKMNNNKNVVSWNTMVGGFSA 725
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG----------QAIHGMF 150
+ +F + Q++ + V A PV F ++ F
Sbjct: 726 EGDTHGTFDVLRQMLAGG----EDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF 781
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ +++N+ + YA CG L+ A VF I K V SWN++I G + +++ + +
Sbjct: 782 VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQ 841
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M++ + PD T+ +LSAC+K + L G V I +N ++ DL
Sbjct: 842 MKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 886
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
L +++A+ + +G+ IH + +D V+ +I YA+CG + VF
Sbjct: 441 ALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA 500
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEF 238
+ K++ WN++IS + +++ +E + EM ++ PD T V+ ACA D+
Sbjct: 501 LRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGI 560
Query: 239 GIWVSSHIEKNGIKMDL 255
G+ V + K G+ D+
Sbjct: 561 GLAVHGLVVKTGLVEDV 577
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 11/201 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q+ +IHAQ+++T+ D ++AS+L T + + YA +F QI QPN + NT+++
Sbjct: 26 QILQIHAQLITTNLISDTFAASRLLDSVVSKTLN-VNYAELVFAQIHQPNSFICNTMVKC 84
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFED 152
Y+ S P ++ + ++ + +T PFV+KA G + G F
Sbjct: 85 YTESSTPERALRFYAEM-RKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGG 143
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N LI Y CG+ A VF +KD+VSWNSM+ G+V G E A ++ EM
Sbjct: 144 DVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMP 203
Query: 213 VENVKPDEVTMVVVLSACAKK 233
+ D V+ +++ KK
Sbjct: 204 ----ERDVVSWSIMIDGYGKK 220
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 97/189 (51%), Gaps = 10/189 (5%)
Query: 52 FFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS 107
FFD L + ++ + +E AR++FB++ Q N+ +W+ +I Y+ + ++
Sbjct: 230 FFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEA 289
Query: 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIH 162
+F Q++ P+ ++ + A ++ G+ IH + D+V+ +L+
Sbjct: 290 LNLFRQMLCQGIK-PDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVD 348
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
Y CG A +F + +++VVSWN MI G GF ++A+E + +ME+E + D++
Sbjct: 349 MYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLL 408
Query: 223 MVVVLSACA 231
+ VL AC+
Sbjct: 409 FLGVLMACS 417
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 93/188 (49%), Gaps = 34/188 (18%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+E A+ MFD++P+ ++ +W+ +I Y + +F ++P
Sbjct: 190 GEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFD------------SMP-- 235
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
DLV NS+I YA G++ +A +F + +K+V+SW+
Sbjct: 236 --------------------TRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSI 275
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MI G+ ++A+ L+R+M + +KPD V++V +SAC++ L+ G W+ ++++N
Sbjct: 276 MIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNR 335
Query: 251 IKMDLTFE 258
+ +D+ +
Sbjct: 336 MLLDIVVQ 343
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+LE A +F+Q+P ++ +W T+I+ YS + ++ +F +++ P+E T+
Sbjct: 234 LGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMM-EEGIIPDEVTMST 292
Query: 130 VIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
VI A A +G+ +H F D+ I ++L+ Y+ CG L A VF + KK+
Sbjct: 293 VISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKN 352
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+ WNS+I G GF ++A++++ +ME+E+VKP+ VT V V +AC
Sbjct: 353 LFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTAC 398
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 37/189 (19%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S + ARK+FD++P+ + W T++ AY
Sbjct: 170 SATGRIREARKVFDEMPERDDIAWTTMVSAYR---------------------------- 201
Query: 128 PFVIKAAARPVQFRVGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
R + ++ + M E + SN LI+ Y G+L A +F + KD++
Sbjct: 202 --------RVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII 253
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
SW +MI G+ + + +AI ++ +M E + PDEVTM V+SACA LE G V +
Sbjct: 254 SWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYT 313
Query: 247 EKNGIKMDL 255
+NG +D+
Sbjct: 314 LQNGFVLDV 322
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 37/200 (18%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H L F D Y S L ++ C SLE A +F +P+ NL+ WN++I
Sbjct: 307 KEVHMYTLQNGFVLDVYIGSALVDMYSKCG-----SLERALLVFFNLPKKNLFCWNSIIE 361
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
++ ++ +F ++ S PN T V A G+ I+ DD I
Sbjct: 362 GLAAHGFAQEALKMFAKMEMESVK-PNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSI 420
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+++ H+ M+ F + G +A+EL ME E
Sbjct: 421 VSNVEHY-------------------------GGMVHLFSKAGLIYEALELIGNMEFE-- 453
Query: 217 KPDEVTMVVVLSACAKKRDL 236
P+ V +L C ++L
Sbjct: 454 -PNAVIWGALLDGCRIHKNL 472
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD +PQ + +W +I Y+ + ++ +F+++ + N T + A
Sbjct: 344 ARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGES-SNRSTFSCALSTCA 402
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ +HG FE + N+L+ Y CG A VF I +KDVVSWN+
Sbjct: 403 DIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNT 462
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI+G+ GF +A+ L+ M+ VKPDE+TMV VLSAC+
Sbjct: 463 MIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACS 503
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 33/207 (15%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSS-----------SDEPIQSFMIFLQLVYN------- 117
AR++FD++P ++ +WNT+I Y+ ++ PI+ + +V
Sbjct: 220 ARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMV 279
Query: 118 ---SPYF-----PNEFTLPFVIKAAARPVQFR----VGQAIHGMFEDDLVISNSLIHFYA 165
YF NE + ++ A VQ++ G+ M ++ N++I Y
Sbjct: 280 DEARKYFDEMPVKNEISYNAML---AGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYG 336
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
G +A A +F M+ ++D VSW ++ISG+ + G +E+A+ ++ EM+ + + T
Sbjct: 337 QNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSC 396
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIK 252
LS CA LE G V + K G +
Sbjct: 397 ALSTCADIAALELGKQVHGQVVKAGFE 423
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
+ P++ TWN I ++ + + +F NS + + +I R +F
Sbjct: 40 KFKDPDIVTWNKAISSHMRNGHCDSALRVF-----NSMPRRSSVSYNAMISGYLRNAKFS 94
Query: 142 VGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
+ + + M E DL N ++ Y L A+ +F ++ KKDVVSWN+M+SG+ + GF
Sbjct: 95 LARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGF 154
Query: 201 FEKAIELYREMEVEN 215
++A E++ +M N
Sbjct: 155 VDEAREVFNKMPHRN 169
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 97/215 (45%), Gaps = 30/215 (13%)
Query: 10 SIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALST 69
S+PR + + + +G+ R+ F L+ D F D LF+ + T
Sbjct: 71 SMPRRSSVSYNAMISGYLRNAKF-------------SLARDLF-DKMPERDLFSWNVMLT 116
Query: 70 F----SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L A K+FD +P+ ++ +WN ++ Y+ + F+ + V+N P+
Sbjct: 117 GYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQN-----GFVDEAREVFNK--MPHRN 169
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED----DLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
++ + AA R+ +A +FE +L+ N L+ Y L A +F +
Sbjct: 170 SISWNGLLAAYVHNGRLKEARR-LFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMP 228
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+DV+SWN+MISG+ + G +A L+ E + +V
Sbjct: 229 VRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDV 263
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+LE A +F+Q+P ++ +W T+I+ YS + ++ +F +++ P+E T+
Sbjct: 234 LGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMM-EEGIIPDEVTMST 292
Query: 130 VIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
VI A A +G+ +H F D+ I ++L+ Y+ CG L A VF + KK+
Sbjct: 293 VISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKN 352
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+ WNS+I G GF ++A++++ +ME+E+VKP+ VT V V +AC
Sbjct: 353 LFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTAC 398
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 37/189 (19%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S + ARK+FD++P+ + W T++ AY
Sbjct: 170 SATGGIREARKVFDEMPERDDIAWTTMVSAYR---------------------------- 201
Query: 128 PFVIKAAARPVQFRVGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
R + ++ + M E + SN LI+ Y G+L A +F + KD++
Sbjct: 202 --------RVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII 253
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
SW +MI G+ + + +AI ++ +M E + PDEVTM V+SACA LE G V +
Sbjct: 254 SWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYT 313
Query: 247 EKNGIKMDL 255
+NG +D+
Sbjct: 314 LQNGFVLDV 322
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 37/200 (18%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H L F D Y S L ++ C SLE A +F +P+ NL+ WN++I
Sbjct: 307 KEVHMYTLQNGFVLDVYIGSALVDMYSKCG-----SLERALLVFFNLPKKNLFCWNSIIE 361
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
++ ++ +F ++ S PN T V A G+ I+ DD I
Sbjct: 362 GLAAHGFAQEALKMFAKMEMESVK-PNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSI 420
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+++ H+ M+ F + G +A+EL ME E
Sbjct: 421 VSNVEHY-------------------------GGMVHLFSKAGLIYEALELIGNMEFE-- 453
Query: 217 KPDEVTMVVVLSACAKKRDL 236
P+ V +L C ++L
Sbjct: 454 -PNAVIWGALLDGCRIHKNL 472
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 113/215 (52%), Gaps = 14/215 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+R+HA M+ T + Y ++L + C LE ARK+ D++P+ N+ +W +I
Sbjct: 72 QRVHAHMIKTRYLPATYLRTRLLIFYGKC-----DCLEDARKVLDEMPEKNVVSWTAMIS 126
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
YS + ++ +F +++ S PNEFT V+ + R +G+ IHG+ ++
Sbjct: 127 RYSQTGHSSEALTVFAEMM-RSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYD 185
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + +SL+ YA G + A +F + ++DVVS ++I+G+ + G E+A+E++ +
Sbjct: 186 SHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL 245
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
E + P+ VT +L+A + L+ G H+
Sbjct: 246 HSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHV 280
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 107/207 (51%), Gaps = 9/207 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH ++ ++ + S L A + ++ AR++F+ +P+ ++ + +I Y+
Sbjct: 173 KQIHGLIVKWNYDSHIFVGSSLLDMYAKA--GQIKEAREIFECLPERDVVSCTAIIAGYA 230
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDL---- 154
++ +F +L ++ PN T ++ A + G+ H + +L
Sbjct: 231 QLGLDEEALEMFHRL-HSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYA 289
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ NSLI Y+ CG+L+ A +F + ++ +SWN+M+ G+ + G + +EL+R M E
Sbjct: 290 VLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDE 349
Query: 215 N-VKPDEVTMVVVLSACAKKRDLEFGI 240
VKPD VT++ VLS C+ R + G+
Sbjct: 350 KRVKPDAVTLLAVLSGCSHGRMEDTGL 376
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 130 VIKAAARPVQFRVGQAIHG-MFEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
++ A R GQ +H M + + + L+ FY C L A V + +K+
Sbjct: 58 LLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 117
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VVSW +MIS + + G +A+ ++ EM + KP+E T VL++C + L G +
Sbjct: 118 VVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHG 177
Query: 245 HIEK 248
I K
Sbjct: 178 LIVK 181
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 117/227 (51%), Gaps = 15/227 (6%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNL 88
+L KQ + IHA + S+ F D + ++ C SLE A+ +FD++P ++
Sbjct: 117 YLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCG-----SLEEAQDLFDKMPTKDM 171
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+W LI YS S + ++ +F ++++ + PNEFTL ++KA+ G+ +H
Sbjct: 172 VSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSLLKASGTGPSDHHGRQLHA 230
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
++ ++ + +SL+ YA + A +F + K+VVSWN++I+G G E
Sbjct: 231 FSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEH 290
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ L+ +M + +P T VL ACA LE G WV +H+ K+G
Sbjct: 291 VMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSG 336
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 9/218 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++HA L + + + S L A ++ + A+ +F+ + N+ +WN LI ++
Sbjct: 226 RQLHAFSLKYGYDMNVHVGSSLLDMYA--RWAHMREAKVIFNSLAAKNVVSWNALIAGHA 283
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDL 154
E +F Q++ + P FT V+ A A G+ +H +
Sbjct: 284 RKGEGEHVMRLFXQMLRQG-FEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIA 341
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I N+LI YA G + A VF + K+D+VSWNS+ISG+ + G +A++L+ +M
Sbjct: 342 YIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKA 401
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
V+P+E+T + VL+AC+ L+ G + ++K+ I+
Sbjct: 402 KVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIE 439
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 102/183 (55%), Gaps = 6/183 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
+++ AR+ FD++P+ ++ W+T+I YS + P +S +F ++ + PNE TL V+
Sbjct: 259 AIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCK-PNEVTLVGVL 317
Query: 132 KAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A A+ +G+ I E + + ++LI Y CG +A A VF + +K V+
Sbjct: 318 SACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVI 377
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+WNSMI G GF E AI LY EM + V+P+E+T + +L+AC ++ G+ +
Sbjct: 378 AWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEM 437
Query: 247 EKN 249
+KN
Sbjct: 438 KKN 440
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 102/190 (53%), Gaps = 5/190 (2%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +E AR++FD +P+ +WN++I Y+ E ++ +F Q++ PN T+
Sbjct: 155 SRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGAS-PNAITI 213
Query: 128 PFVIKAAARPVQFRVGQ-AIHGMFEDDL---VISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V A+ G+ A + E+DL ++ +L+ Y C + A F + ++
Sbjct: 214 TTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRR 273
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
DVV+W++MI+G+ G +++EL+ M+ N KP+EVT+V VLSACA+ E G +
Sbjct: 274 DVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIG 333
Query: 244 SHIEKNGIKM 253
S+IE + +
Sbjct: 334 SYIESQTLPL 343
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 43/226 (19%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
LS S+ AR +FD +P+P + S + L P+
Sbjct: 22 LSDASTYRAARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSG-C 80
Query: 127 LPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVF--- 177
+P V+K+ A G H GM D+ + +L+ FYA G++ A F
Sbjct: 81 IPLVLKSCALSAASCQGTQTHCHALVRGML-GDVFVQTALVDFYAKNGNMDSAVMAFEEM 139
Query: 178 ----------VMIG------------------KKDVVSWNSMISGFVEGGFFEKAIELYR 209
++IG +K SWNSMI+ + GG F++A+ L+
Sbjct: 140 PIKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFD 199
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFG----IWVSSHIEKNGI 251
+M E P+ +T+ V S CAK DLE G WVS +N I
Sbjct: 200 QMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVI 245
>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33760-like [Vitis vinifera]
Length = 561
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 10/227 (4%)
Query: 37 KQLKRIHAQML-STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
K L+++HA ++ S + L C T S+ Y R++F I P+ + +N +I
Sbjct: 33 KPLQQVHAHLIVSGSYRSRALLTKLLTLAC---TAGSILYTRQLFFSITNPDSFLFNAII 89
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
+A S + + + ++V +S N +T VIKA A R+G+ IH +
Sbjct: 90 KASSKFGFSCDAILFYRRMVADSIPQSN-YTFTAVIKACADISALRIGRPIHSHVLVCGY 148
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ D + +LI FYA GD+ A VF + ++ +++WNSMISG+ + GF ++A+ L+
Sbjct: 149 DSDSFVQAALIAFYAKSGDVGEAKKVFDRMPERTIIAWNSMISGYDQNGFSKEAVGLFYR 208
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M V+ D T V VLSAC++ L+ G WV +I N +++
Sbjct: 209 MRELGVEFDSATFVSVLSACSQSGALDLGCWVHDYIVNNSFDVNVVL 255
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 113/249 (45%), Gaps = 47/249 (18%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH+ +L + D + + L A S + A+K+FD++P+ + WN++I Y +
Sbjct: 139 IHSHVLVCGYDSDSFVQAALIAFYAKS--GDVGEAKKVFDRMPERTIIAWNSMISGYDQN 196
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVI 156
++ +F ++ F + T V+ A ++ +G +H F+ ++V+
Sbjct: 197 GFSKEAVGLFYRMRELGVEF-DSATFVSVLSACSQSGALDLGCWVHDYIVNNSFDVNVVL 255
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
SLI+ Y CG+++ A VF + +++VV+W +MISG+ G+ +AIEL+R M + +
Sbjct: 256 GTSLINMYTRCGNVSKAREVFDEMNERNVVAWTAMISGYGMHGYGREAIELFRLMRIHGM 315
Query: 217 KPD---------EVTMV------------------------------VVLSACAKKRDLE 237
+ D V MV +L AC ++L+
Sbjct: 316 RQDYGLVPRVEHHVCMVDMLGRAGFLNEAFQYIKDLKQGEQAPALWTAMLGACKMHKNLD 375
Query: 238 FGIWVSSHI 246
G+ V+ H+
Sbjct: 376 LGVQVAEHL 384
>gi|302798571|ref|XP_002981045.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
gi|300151099|gb|EFJ17746.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
Length = 833
Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE AR++F ++P+ N+ +WN ++ + + + ++ +F ++V + P + V+
Sbjct: 252 LESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLN 311
Query: 133 AAARPVQFRVGQAIHGMFEDDLVIS-----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A P G+ IH M ++ ++S N+L+ Y CG + A VF + ++D+VS
Sbjct: 312 AVTTPEALAEGRRIHAMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVS 371
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
WN+MIS + + G + + L+ M E V PD +T ++ L ACA+ RDL+ G
Sbjct: 372 WNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACAEIRDLDSG 423
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 106/195 (54%), Gaps = 11/195 (5%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SSL+ ARK+FD++ + ++ +W +I AY+ + Q+ +F ++ S PN T +
Sbjct: 47 SSLDEARKVFDRMRERDVVSWTAMISAYAQTGHQRQALDLFTEMA-GSSLDPNRVTFLAL 105
Query: 131 IKAAARPVQFRVGQAIHG------MFEDDLVISNSLIHFYAVC--GDLAMAYCVFVMIGK 182
++A P G+ IH + E D+ ++N+++ Y C DLAMA VF + +
Sbjct: 106 LEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERADLAMA--VFSEMRE 163
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+D++SWN+ I+ E G + + L + M++E + PD+VT V L+AC R L G +
Sbjct: 164 RDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRSLSNGRLI 223
Query: 243 SSHIEKNGIKMDLTF 257
+ + + G++ D+
Sbjct: 224 HALVLERGMEGDVVL 238
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 16/205 (7%)
Query: 37 KQLKRIHAQML--STDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
+Q + IH +++ + + DP A+ ++ C L+ AR +F+ NL +W
Sbjct: 530 RQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCG-----ELDTARHLFEDTSHRNLASW 584
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
N++I AY+ Q+F + + + P+ T ++ A R G+ IH
Sbjct: 585 NSMISAYALHGRAEQAFDLS-ERMRREGVLPDRVTFITLLNACVAGGAVRHGKMIHARII 643
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
E D V++N+L++FY+ CG+L A +F + +DVVSWN +I+GF G +A++
Sbjct: 644 DSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDVVSWNGIIAGFAHNGHAREALK 703
Query: 207 LYREMEVENVKPDEVTMVVVLSACA 231
M+ + V+PD +T + +LSA +
Sbjct: 704 SMWLMQQDGVRPDAITFLTILSASS 728
Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 8/189 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E +F+ + ++ +WNT+I Y + + + IF +++ N+ T ++
Sbjct: 463 MEVVAGIFESMAARDVISWNTMITGYVQAGDSFSALSIFKRMLLEG-IRGNQVTFMSLLS 521
Query: 133 AAARPVQFRVGQAIHGM-------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
R G+ IH D +++ ++++ Y CG+L A +F +++
Sbjct: 522 VCDSRAFLRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNL 581
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
SWNSMIS + G E+A +L M E V PD VT + +L+AC + G + +
Sbjct: 582 ASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRHGKMIHAR 641
Query: 246 IEKNGIKMD 254
I +G++ D
Sbjct: 642 IIDSGLEKD 650
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 143 GQAIHGMFE---DD--LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ +HG + DD L N L++ Y C L A VF + ++DVVSW +MIS + +
Sbjct: 17 GRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMRERDVVSWTAMISAYAQ 76
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G +A++L+ EM ++ P+ VT + +L AC LE G + + +
Sbjct: 77 TGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDSPEFLEDGKQIHARV 125
>gi|326490736|dbj|BAJ90035.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511421|dbj|BAJ87724.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 801
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 105/191 (54%), Gaps = 6/191 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S S ++ AR +FD+ + N+ WNT+I Y + + Q+ +F+Q++ + + T
Sbjct: 255 SEISDVQSARMVFDRAGKKNIEVWNTMITGYVQNGQFSQAMDLFIQILGSKEVPSDVVTF 314
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDL------VISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ AA++ R+GQ +HG + ++ N+L+ Y+ CG++ A+ +F +
Sbjct: 315 LSAVTAASQSQDVRLGQQLHGYLMKGMHSTLPVILGNALVVMYSRCGNVQTAFELFDRLP 374
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+KD+VSWN+MI+ FV+ F + + L +M+ PD VT+ VLSA + DL+ G
Sbjct: 375 EKDIVSWNTMITAFVQNDFDLEGLLLVYQMQKSGFIPDTVTLTAVLSAASNTGDLQIGKQ 434
Query: 242 VSSHIEKNGIK 252
++ ++GI+
Sbjct: 435 SHGYLIRHGIE 445
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 27/235 (11%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
G Q H + + + I + L + + D YS S ++ A+++FD
Sbjct: 432 GKQSHGYLIRHG-----IEGEGLES-YLIDMYSKS-----------GRIDMAQRVFDGYG 474
Query: 85 QP-NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV- 142
+ TWN +I Y+ S +P Q+ + F ++ + P TL V+ A PV V
Sbjct: 475 NDRDEVTWNAMIAGYTQSGQPEQAVLQFRAMI-EAGVEPTSVTLASVLPAC-DPVGGGVC 532
Query: 143 -GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
G+ IH + ++ + +L+ Y+ CG+++ A VF + +K V++ +MISG
Sbjct: 533 AGKQIHSFALRHSLDTNVFVGTALVDMYSKCGEISAAENVFGGMTEKSTVTYTTMISGLG 592
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ GF E+A+ L+ M + +KPD VT + +SAC ++ G+ + +E G+
Sbjct: 593 QHGFGERALSLFYSMRDKGLKPDAVTFLAAISACNYSGLVDEGLSLYRSMETFGL 647
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 101/195 (51%), Gaps = 6/195 (3%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L+ CA ++ R++FD +P+ N+ +WNTL Y + P ++ +F +++ +
Sbjct: 146 LYASCARHRRGGVDVVRRLFDAMPKKNVVSWNTLFGWYVKTGRPDEALEMFARMLEDGVR 205
Query: 121 -FPNEFTLPFVIKAAARPVQ--FRVGQAI-HGM-FEDDLVISNSLIHFYAVCGDLAMAYC 175
P F F + P G I HG+ + +DL + +S I ++ D+ A
Sbjct: 206 PTPVSFVNVFPAAGSGDPSWPFLLYGLLIKHGVEYVNDLFVVSSAIGMFSEISDVQSARM 265
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE-MEVENVKPDEVTMVVVLSACAKKR 234
VF GKK++ WN+MI+G+V+ G F +A++L+ + + + V D VT + ++A ++ +
Sbjct: 266 VFDRAGKKNIEVWNTMITGYVQNGQFSQAMDLFIQILGSKEVPSDVVTFLSAVTAASQSQ 325
Query: 235 DLEFGIWVSSHIEKN 249
D+ G + ++ K
Sbjct: 326 DVRLGQQLHGYLMKG 340
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 73 LEYARKMF-DQIPQPN-LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP--NEFTLP 128
LE+AR++ D +P+P N L+ AY + P + ++ L + + P + +T
Sbjct: 45 LEHARRLLLDALPRPPPTLLCNVLLIAYVAGALPDHALRLYALLNHAARPAPRSDHYTYS 104
Query: 129 FVIKAAARPVQFRVGQAIHG-------MFEDDLVISNSLIHFYAVC-----GDLAMAYCV 176
+ A AR + R+G+++H D V+ NSL++ YA C G + + +
Sbjct: 105 CALTACARSRRLRLGRSVHAHLLRRARSLPDTAVLRNSLLNLYASCARHRRGGVDVVRRL 164
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F + KK+VVSWN++ +V+ G ++A+E++ M + V+P V+ V V A
Sbjct: 165 FDAMPKKNVVSWNTLFGWYVKTGRPDEALEMFARMLEDGVRPTPVSFVNVFPAAG 219
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S L+ AR +F+ + + ++ WN +I Y+ S P +S +F +++ + PNE T+
Sbjct: 218 SKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLV-AKAIPNEVTV 276
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A + G+ IH E+ + + +LI Y+ CG L A VF I
Sbjct: 277 LAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRD 336
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
KDVV+WNSMI G+ GF + A++L+ EM KP ++T + +LSAC +E G
Sbjct: 337 KDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEG 393
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 119/250 (47%), Gaps = 35/250 (14%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
L +IHA +L + +P KL A L+ + +F+ +PN+++++ +I +
Sbjct: 62 HLLQIHASLLRRGLYHNPILNFKLQRSYA--ALGRLDCSVFVFNTFDEPNVFSFSAIIHS 119
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA-RPVQFRVGQAIHGMFEDDLVI 156
+ S ++F + Q++ + PN FT V+K+ + + QAI DL +
Sbjct: 120 HVQSRLFDRAFGYYSQML-SCGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYV 178
Query: 157 SNSLIHFYA-----VC--------------------------GDLAMAYCVFVMIGKKDV 185
L+ YA VC G+L A +F + ++DV
Sbjct: 179 RTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDV 238
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V WN MI G+ + G ++++L+R M V P+EVT++ VLSAC + LE G W+ S+
Sbjct: 239 VCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSY 298
Query: 246 IEKNGIKMDL 255
IE GI++++
Sbjct: 299 IENKGIQINV 308
Score = 37.0 bits (84), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 132 KAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
K+ A +Q G++ + +++ L YA G L + VF + +V S++++
Sbjct: 58 KSVAHLLQIHASLLRRGLYHNP-ILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAI 116
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
I V+ F++A Y +M V+P+ T VL +C+ LE G + K G+
Sbjct: 117 IHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGL 172
Query: 252 KMDL 255
DL
Sbjct: 173 GSDL 176
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 97/169 (57%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++E ARK FD + + NL ++NT++ AY+ S ++F +F + + + N FT
Sbjct: 296 SRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNE-IEGAGTGVNAFTF 354
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ A+ G+ IH F+ +L I N+LI Y+ CG++ A+ VF +G
Sbjct: 355 ASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGD 414
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+V+SW SMI+GF + GF +A+E + +M V P+EVT + VLSAC+
Sbjct: 415 GNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACS 463
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 109/231 (47%), Gaps = 24/231 (10%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTF-----SSLEYARKMFDQIPQPNLYTWNTL 94
K I +L T +F S + CAL LE A K+FD++P N+ TW +
Sbjct: 62 KIIFGFLLKTGYF-----ESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLM 116
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
I + + +FL +V S Y P+ FTL V+ A A +G+ H +
Sbjct: 117 ITRFQQLGFSRDAVDLFLDMVL-SGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSG 175
Query: 150 FEDDLVISNSLIHFYAVC---GDLAMAYCVFVMIGKKDVVSWNSMISGFVE-GGFFEKAI 205
+ D+ + SL+ YA C G + A VF + +V+SW ++I+G+V+ GG +AI
Sbjct: 176 LDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAI 235
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
EL+ EM VKP+ T VL ACA D IW+ + +KM L
Sbjct: 236 ELFLEMVQGQVKPNHFTFSSVLKACANLSD----IWLGEQVYALVVKMRLA 282
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ +L +W+ LI Y+++++ ++ F ++ ++PNE+ V +A + +G+
Sbjct: 4 KRDLVSWSALISCYANNEKAFEAISAFFDML-ECGFYPNEYCFTGVFRACSNKENISLGK 62
Query: 145 AIHGM------FEDDLVISNSLIH-FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
I G FE D+ + +LI F GDL AY VF + ++VV+W MI+ F +
Sbjct: 63 IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
GF A++L+ +M + PD T+ V+SACA+ L G + K+G+ +D+
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVC 181
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 98/191 (51%), Gaps = 7/191 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAY-SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
S++ ARK+FD++P N+ +W +I Y S ++ +FL++V PN FT
Sbjct: 197 GSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV-QGQVKPNHFTFSS 255
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+KA A +G+ ++ + + NSLI Y+ CG++ A F ++ +K+
Sbjct: 256 VLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKN 315
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+VS+N++++ + + E+A EL+ E+E + T +LS + + G + S
Sbjct: 316 LVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHS 375
Query: 245 HIEKNGIKMDL 255
I K+G K +L
Sbjct: 376 RILKSGFKSNL 386
>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
Length = 782
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 129/251 (51%), Gaps = 15/251 (5%)
Query: 15 PNPTTL-TVNNGHQRHPHFLTNQKQL-KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS 72
PN TL TV N + PH+L+ K + + ++++ +D SA +F L
Sbjct: 205 PNKITLYTVFNAYG-DPHYLSEGKFIYSLVSSRVMESDVRV-MNSAMNMFGNAGL----- 257
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L AR++F+ + ++ TWN +I Y ++ ++ +F +L + N+ T ++
Sbjct: 258 LGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIK-ANDITFVLMLN 316
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
G+ IH + ++ D+V++ +L+ Y C A+ +FV +G KDV++
Sbjct: 317 VYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVIT 376
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W M + + GF ++A++L++EM++E +P T+V VL CA L+ G + SHI
Sbjct: 377 WTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHII 436
Query: 248 KNGIKMDLTFE 258
+NG +M++ E
Sbjct: 437 ENGFRMEMVVE 447
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE---YARKMFDQIPQPNLY 89
LT+ + K IH + + D A+ L +S + E A K+F + ++
Sbjct: 321 LTSLAKGKVIHELVKEAGYDRDVVVATAL-----MSLYGRCEAPGQAWKIFVDMGSKDVI 375
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TW + AY+ + ++ +F ++ P TL V+ A + G+ IH
Sbjct: 376 TWTVMCVAYAQNGFRKEALQLFQEMQLEGRR-PTSATLVAVLDTCAHLAALQKGRQIHSH 434
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
F ++V+ +LI+ Y CG +A A VF + K+D++ WNSM+ + + G++++
Sbjct: 435 IIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDET 494
Query: 205 IELYREMEVENVKPDEVTMVVVLSA 229
++L+ +M+++ K D V+ V VLSA
Sbjct: 495 LQLFNQMQLDGEKADAVSFVSVLSA 519
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 11/201 (5%)
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
+++ C S+ A+++F+ + + +++ W +I Y + ++ +F Q+
Sbjct: 48 QMYAQCG-----SVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQM-QEED 101
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAY 174
P + T ++ A A + G IHG FE D+ + +LI+ Y CG + A+
Sbjct: 102 VMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAW 161
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
F + +DVVSW +MI+ V+ F A LYR M+++ V P+++T+ V +A
Sbjct: 162 DSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPH 221
Query: 235 DLEFGIWVSSHIEKNGIKMDL 255
L G ++ S + ++ D+
Sbjct: 222 YLSEGKFIYSLVSSRVMESDV 242
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 63/106 (59%)
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
FE + ++ LI YA CG + A VF ++ +KDV +W MI + + G +++A+ ++
Sbjct: 36 FEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFY 95
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+M+ E+V P +VT V +L+ACA L+ G+ + I + G + D+
Sbjct: 96 QMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDV 141
>gi|255562850|ref|XP_002522430.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538315|gb|EEF39922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 556
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 8/218 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH Q L + A+ L T + L+Y ++F+++ N+ +W +I Y+
Sbjct: 236 RQIHCQALKRSLEASSFVANTLAT--MYNKCGKLDYGSRLFEKMTIRNVVSWTMIITTYT 293
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S + + F+++ PN+FT VI A + G+ +HG L
Sbjct: 294 QSGQEENALRAFIRM-QEIGVSPNDFTFAAVISGCANLGKTEWGEQLHGHMLCLGLMTFL 352
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++NS+I Y+ CG L A VF + ++DVVSW+++I+G+ +GG E+A E M E
Sbjct: 353 SVANSVITLYSKCGQLKSASMVFKELTRRDVVSWSTIIAGYSQGGCAEEAFEYLSRMRRE 412
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
KP+E+T+ VLS C LE G + +H G++
Sbjct: 413 GPKPNELTLASVLSVCGNMAILEQGKQLHAHALHVGLE 450
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 14/208 (6%)
Query: 40 KRIHAQMLSTD---FFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+++H ML F S L++ C L+ A +F ++ + ++ +W+T+I
Sbjct: 337 EQLHGHMLCLGLMTFLSVANSVITLYSKCG-----QLKSASMVFKELTRRDVVSWSTIIA 391
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ-----AIHGMFE 151
YS ++F ++ P PNE TL V+ G+ A+H E
Sbjct: 392 GYSQGGCAEEAFEYLSRMRREGPK-PNELTLASVLSVCGNMAILEQGKQLHAHALHVGLE 450
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+I ++LI+ Y+ CG + A +F D+VSW +MI+G+ E G ++AI+L+ ++
Sbjct: 451 QTAMIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMINGYAEHGCRQEAIDLFEKI 510
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
+KPD VT + VL+AC+ ++ G
Sbjct: 511 PRIGLKPDPVTFIGVLTACSHAGLVDLG 538
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 5/179 (2%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
AL L+ AR+MFD++P + +W T+I Y ++ + ++ +F ++ + F
Sbjct: 57 ALVKTGCLQDARQMFDEMPHRDEISWTTIISGYVNAIDTTEALTLFSKMWVVPGLRMDPF 116
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
L +K + G+++HG F D + + ++L+ Y + +F +
Sbjct: 117 ILSLALKICGLSLNESYGESLHGYSVKSDFVDSVFVGSALVDMYMKFDKIQQGCQIFHAM 176
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++VVSW ++I+GFV G+ ++ + + +M V D T + L ACA L+ G
Sbjct: 177 PIRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANLGALDHG 235
>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g13650-like [Cucumis sativus]
Length = 1037
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 8/225 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+K++H++ F P A+ L + + + +E A+K+F+ I ++ TW +I
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLYSKNGY--IESAKKVFNCICMKDIVTWVAMISGL 236
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
S + ++ ++F + + S FP + L V+ A+ + F +G+ +H + F +
Sbjct: 237 SQNGLEEEAILLFCDM-HASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSE 295
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ N L+ Y+ L A +F + +D VS+NS+ISG V+ GF ++A+EL+ +M+
Sbjct: 296 TYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQR 355
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ +KPD +T+ +LSACA L G+ + SH K G+ D+ E
Sbjct: 356 DCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILE 400
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 22/241 (9%)
Query: 21 TVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF 80
++ G Q H H I A M S D + S L++ CA +E A K F
Sbjct: 377 ALHKGMQLHSH---------AIKAGM-SADIILEG-SLLDLYSKCA-----DVETAHKFF 420
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
N+ WN ++ AY D SF IF Q+ PN+FT P +++
Sbjct: 421 LXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEG-MIPNQFTYPSILRTCTSLGAL 479
Query: 141 RVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
+G+ IH F+ ++ + + LI YA G LA+A + + + DVVSW +MI+G+
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY 539
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V+ F +A++L+ EME ++ D + +SACA R L G + + G DL
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599
Query: 256 T 256
+
Sbjct: 600 S 600
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 8/177 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH ++ T F + Y S L A + L A ++ ++P+ ++ +W +I Y
Sbjct: 483 EQIHTHVIKTGFQLNVYVCSVLIDMYA--KYGQLALALRILRRLPEDDVVSWTAMIAGYV 540
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
D ++ +F ++ Y F N I A A R GQ IH F DL
Sbjct: 541 QHDMFSEALQLFEEMEYRGIQFDN-IGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
I+N+LI YA CG + AY F IG K+ +SWNS++SG + G+FE+A++++ M
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRM 656
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 107/200 (53%), Gaps = 8/200 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q ++IHAQ + F D + L + A ++ A F++I N +WN+L+
Sbjct: 581 RQGQQIHAQSYAAGFGADLSINNALISLYA--RCGRIQEAYLAFEKIGDKNNISWNSLVS 638
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ S ++ +F++++ N FT I AAA + GQ IH M ++
Sbjct: 639 GLAQSGYFEEALQVFVRMLRTEAEV-NMFTYGSAISAAASLANIKQGQQIHSMVLKTGYD 697
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ +SNSLI YA G ++ A+ F + +++V+SWN+MI+G+ + G +A+ L+ EM
Sbjct: 698 SEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEM 757
Query: 212 EVENVKPDEVTMVVVLSACA 231
+V + P+ VT V VLSAC+
Sbjct: 758 KVCGIMPNHVTFVGVLSACS 777
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 7/170 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA- 134
A K+FD+ ++++WN +I + + Q F +F +++ PN +T V+KA
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT-PNGYTFAGVLKACV 170
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ F + +H F+ +++N LI Y+ G + A VF I KD+V+W
Sbjct: 171 GGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWV 230
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+MISG + G E+AI L+ +M + P + VLSA K + E G
Sbjct: 231 AMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELG 280
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 102/222 (45%), Gaps = 10/222 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H ++ F + Y + L + S L A ++F + + ++N+LI
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGLVALYSRSR--KLISAERIFSTMNSRDGVSYNSLISGLV 338
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDD 153
++ +F ++ + P+ T+ ++ A A G +H GM D
Sbjct: 339 QQGFSDRALELFTKMQRDCLK-PDCITVASLLSACASVGALHKGMQLHSHAIKAGM-SAD 396
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+++ SL+ Y+ C D+ A+ F+ +++V WN M+ + + + E++R+M++
Sbjct: 397 IILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQM 456
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E + P++ T +L C L G + +H+ K G ++++
Sbjct: 457 EGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNV 498
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 31/212 (14%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N KQ ++IH+ +L T + + ++ L + A S S+ A + F+ + + N+ +WN +
Sbjct: 680 NIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKS--GSISDAWREFNDMSERNVISWNAM 737
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL 154
I YS +++ +F ++ PN T V+ A + G+ ++ L
Sbjct: 738 ITGYSQHGCGMEALRLFEEMKV-CGIMPNHVTFVGVLSACSHI----------GLVKEGL 786
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
S+ + + CV ++G+ G ++A+E +EM +
Sbjct: 787 DYFESMFKIHDLVPKSEHYVCVVDLLGR---------------AGQLDRAMEYIKEMPI- 830
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
D + +LSAC +++E G + H+
Sbjct: 831 --PADAMIWRTLLSACVIHKNIEIGERAAHHL 860
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F+ + ++ +SL+ Y GD A VF + V SWN MI FV + L+R
Sbjct: 89 FDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFR 148
Query: 210 EMEVENVKPDEVTMVVVLSAC 230
M E + P+ T VL AC
Sbjct: 149 RMLAEGITPNGYTFAGVLKAC 169
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+++ A+ +FD++PQ + +W +I Y+ S + ++ +F+++ + N L
Sbjct: 353 GNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGIL-NRSALACA 411
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ + A +G+ +HG F+ + N+L+ Y CG + A+ VF I +KD+
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
VSWN+MI+G+ GF ++A+ L+ M++ +KPD+VT+V VLSAC+
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESMKM-TIKPDDVTLVGVLSACS 516
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 89/181 (49%), Gaps = 6/181 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L AR++F+++P +++ W ++ + + ++ IF ++ P NE + +I
Sbjct: 262 LSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM----PE-KNEVSWNAMIA 316
Query: 133 AAARPVQFRVGQAIHGMFEDDLVIS-NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
+ Q + + S N+++ YA CG++ A +F + ++D +SW +M
Sbjct: 317 GYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAM 376
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
ISG+ + G E+A+ L+ +M+ + + + LS+CA+ LE G + + K G
Sbjct: 377 ISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGF 436
Query: 252 K 252
+
Sbjct: 437 Q 437
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
I ++ WN I AY + + +F N + T +I +F
Sbjct: 55 IVDSDIVKWNRKISAYMRKGQCESALSVF-----NGMRRRSTVTYNAMISGYLSNNKFDC 109
Query: 143 GQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
+ + M + DL+ N ++ Y G+L+ A +F + +KDVVSWN+M+SGF + GF
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
E+A +++ +M V+N E++ +LSA + +E
Sbjct: 170 EEARKIFDQMLVKN----EISWNGLLSAYVQNGRIE 201
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+L AR +F+Q+P+ ++ +WN ++ ++ + ++ IF Q++ NE + +
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML-----VKNEISWNGL 190
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVIS-NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ A + + + + D ++S N L+ Y L A +F + +D +SWN
Sbjct: 191 LSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWN 250
Query: 190 SMISGFVEGGFFEKAIELYREMEVENV 216
MI+G+ + G +A L+ E+ + +V
Sbjct: 251 IMITGYAQNGLLSEARRLFEELPIRDV 277
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 13/175 (7%)
Query: 67 LSTFSS---LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
LS F+ +E ARK+FDQ+ N +WN L+ AY + + +F +S
Sbjct: 160 LSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLF-----DSKMDWE 214
Query: 124 EFTLPFVIKAAARPVQFRVGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ ++ R + +++ M D + N +I YA G L+ A +F +
Sbjct: 215 IVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPI 274
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+DV +W +M+SGFV+ G ++A ++ EM +N EV+ +++ + + +E
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKN----EVSWNAMIAGYVQSQQIE 325
>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 1037
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 8/225 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+K++H++ F P A+ L + + + +E A+K+F+ I ++ TW +I
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLYSKNGY--IESAKKVFNCICMKDIVTWVAMISGL 236
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
S + ++ ++F + + S FP + L V+ A+ + F +G+ +H + F +
Sbjct: 237 SQNGLEEEAILLFCDM-HASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSE 295
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ N L+ Y+ L A +F + +D VS+NS+ISG V+ GF ++A+EL+ +M+
Sbjct: 296 TYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQR 355
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ +KPD +T+ +LSACA L G+ + SH K G+ D+ E
Sbjct: 356 DCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILE 400
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 22/241 (9%)
Query: 21 TVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF 80
++ G Q H H I A M S D + S L++ CA +E A K F
Sbjct: 377 ALHKGMQLHSH---------AIKAGM-SADIILEG-SLLDLYSKCA-----DVETAHKFF 420
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
N+ WN ++ AY D SF IF Q+ PN+FT P +++
Sbjct: 421 LTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEG-MIPNQFTYPSILRTCTSLGAL 479
Query: 141 RVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
+G+ IH F+ ++ + + LI YA G LA+A + + + DVVSW +MI+G+
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY 539
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V+ F +A++L+ EME ++ D + +SACA R L G + + G DL
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599
Query: 256 T 256
+
Sbjct: 600 S 600
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 8/177 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH ++ T F + Y S L A + L A ++ ++P+ ++ +W +I Y
Sbjct: 483 EQIHTHVIKTGFQLNVYVCSVLIDMYA--KYGQLALALRILRRLPEDDVVSWTAMIAGYV 540
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
D ++ +F ++ Y F N I A A R GQ IH F DL
Sbjct: 541 QHDMFSEALQLFEEMEYRGIQFDN-IGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
I+N+LI YA CG + AY F IG K+ +SWNS++SG + G+FE+A++++ M
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRM 656
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 107/200 (53%), Gaps = 8/200 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q ++IHAQ + F D + L + A ++ A F++I N +WN+L+
Sbjct: 581 RQGQQIHAQSYAAGFGADLSINNALISLYARC--GRIQEAYLAFEKIGDKNNISWNSLVS 638
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ S ++ +F++++ N FT I AAA + GQ IH M ++
Sbjct: 639 GLAQSGYFEEALQVFVRMLRTEAEV-NMFTYGSAISAAASLANIKQGQQIHSMVLKTGYD 697
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ +SNSLI YA G ++ A+ F + +++V+SWN+MI+G+ + G +A+ L+ EM
Sbjct: 698 SEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEM 757
Query: 212 EVENVKPDEVTMVVVLSACA 231
+V + P+ VT V VLSAC+
Sbjct: 758 KVCGIMPNHVTFVGVLSACS 777
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 7/170 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA- 134
A K+FD+ ++++WN +I + + Q F +F +++ PN +T V+KA
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT-PNGYTFAGVLKACV 170
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ F + +H F+ +++N LI Y+ G + A VF I KD+V+W
Sbjct: 171 GGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWV 230
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+MISG + G E+AI L+ +M + P + VLSA K + E G
Sbjct: 231 AMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELG 280
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 102/222 (45%), Gaps = 10/222 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H ++ F + Y + L + S L A ++F + + ++N+LI
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGLVALYSRS--RKLISAERIFSTMNSRDGVSYNSLISGLV 338
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDD 153
++ +F ++ + P+ T+ ++ A A G +H GM D
Sbjct: 339 QQGFSDRALELFTKMQRDCLK-PDCITVASLLSACASVGALHKGMQLHSHAIKAGM-SAD 396
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+++ SL+ Y+ C D+ A+ F+ +++V WN M+ + + + E++R+M++
Sbjct: 397 IILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQM 456
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E + P++ T +L C L G + +H+ K G ++++
Sbjct: 457 EGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNV 498
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 31/212 (14%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N KQ ++IH+ +L T + + ++ L + A S S+ A + F+ + + N+ +WN +
Sbjct: 680 NIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKS--GSISDAWREFNDMSERNVISWNAM 737
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL 154
I YS +++ +F ++ PN T V+ A + G+ ++ L
Sbjct: 738 ITGYSQHGCGMEALRLFEEMKV-CGIMPNHVTFVGVLSACSHI----------GLVKEGL 786
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
S+ + + CV ++G+ G ++A+E +EM +
Sbjct: 787 DYFESMFKIHDLVPKSEHYVCVVDLLGR---------------AGQLDRAMEYIKEMPI- 830
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
D + +LSAC +++E G + H+
Sbjct: 831 --PADAMIWRTLLSACVIHKNIEIGERAAHHL 860
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F+ + ++ +SL+ Y GD A VF + V SWN MI FV + L+R
Sbjct: 89 FDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFR 148
Query: 210 EMEVENVKPDEVTMVVVLSAC 230
M E + P+ T VL AC
Sbjct: 149 RMLAEGITPNGYTFAGVLKAC 169
>gi|413925046|gb|AFW64978.1| hypothetical protein ZEAMMB73_457124 [Zea mays]
Length = 592
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 113/199 (56%), Gaps = 11/199 (5%)
Query: 70 FSSLEY---ARKMFDQIPQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
+SS Y AR++ D PQ + +WNT+I Y P ++ F Q+V P ++
Sbjct: 2 YSSCSYPTTARQVLDSAPQGACDTVSWNTIISGYLRCGMPNKALQAFGQMV-KEPVRLDD 60
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
TL + A+A+ + +VG+ H + + + +SLI YA CG + A VF
Sbjct: 61 VTLLNALVASAKAGKAKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHG 120
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ +++VV W SMISG+ + G F+KA++L+R+M++ +K D+ T+ V+S+CA+ L+ G
Sbjct: 121 MHERNVVCWTSMISGYTQLGKFKKAVDLFRDMQITGMKADDGTIATVVSSCAQMGALDLG 180
Query: 240 IWVSSHIEKNGIKMDLTFE 258
+V ++ + +G+ +L+ +
Sbjct: 181 RYVHAYCDVHGLGKELSVK 199
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 98/185 (52%), Gaps = 12/185 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++ C L +E ARK+F + + N+ W ++I Y+ + ++ +F +
Sbjct: 104 MYAKCGL-----VEDARKVFHGMHERNVVCWTSMISGYTQLGKFKKAVDLFRDMQITG-M 157
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYC 175
++ T+ V+ + A+ +G+ +H + +L + NSLI Y+ CGD+ A+
Sbjct: 158 KADDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDITKAHE 217
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKR 234
+F + K+DV SW +MI GF G +A++L+ +ME E V P+EVT + VL++C+
Sbjct: 218 IFCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGG 277
Query: 235 DLEFG 239
+E G
Sbjct: 278 LVEQG 282
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+E A +F QIP ++ +WNT+I YS + P ++ +F ++ S P+ T+ +
Sbjct: 804 GSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESR--PDGITMACL 861
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A +G+ IHG + +L ++N+LI Y CG L A +F MI +KD+
Sbjct: 862 LPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDL 921
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++W MISG G +AI +++M + +KPDE+T +L AC+
Sbjct: 922 ITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACS 967
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 12/225 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY--ARKMFDQIPQPNLYTWNTLI 95
+ KRIH + F S + + + F S E A K+FD++ ++ +WN++I
Sbjct: 571 ECKRIHGCVYKLGFG----SYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMI 626
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
+ + F+Q++ + TL + A A +G+A+HG F
Sbjct: 627 SGCVMNGFSHSALEFFVQMLI-LRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACF 685
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+++ +N+L+ Y+ CG+L A F +G+K VVSW S+I+ +V G ++ AI L+ E
Sbjct: 686 SREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYE 745
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
ME + V PD +M VL ACA L+ G V ++I KN + + L
Sbjct: 746 MESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCL 790
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 7/193 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +L A + F+++ Q + +W +LI AY + +F ++ + P+ +++
Sbjct: 700 SKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM-ESKGVSPDVYSM 758
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A A G+ +H + L +SN+L+ YA CG + AY VF I
Sbjct: 759 TSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPV 818
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
KD+VSWN+MI G+ + +A++L+ EM+ E+ +PD +TM +L AC LE G +
Sbjct: 819 KDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGI 877
Query: 243 SSHIEKNGIKMDL 255
I +NG +L
Sbjct: 878 HGCILRNGYSSEL 890
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 19/214 (8%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPN-LYTWN 92
++ K +H+ + S + +KL + C +L R++FD I N ++ WN
Sbjct: 468 QEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCG-----ALREGRRIFDHILSDNKVFLWN 522
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA--IHGM- 149
++ Y+ + +S +F ++ N +T ++K A RVG+ IHG
Sbjct: 523 LMMSEYAKIGDYRESIYLFKKM-QKLGITGNSYTFSCILKCFA--TLGRVGECKRIHGCV 579
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
F + NSLI Y G++ A+ +F +G +DVVSWNSMISG V GF A+
Sbjct: 580 YKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSAL 639
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
E + +M + V D T+V ++ACA L G
Sbjct: 640 EFFVQMLILRVGVDLATLVNSVAACANVGSLSLG 673
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 116/223 (52%), Gaps = 15/223 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCAL-------STFSSLEYARKMFDQIPQPNLYTWN 92
+ AQ+L D+ P S + C L S S++ RK+F+ +P+ +L +WN
Sbjct: 212 REFEAQVLEIDY--KPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWN 269
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
T+I A ++ + + ++ + + P+ FTL V+ A V G+ IHG
Sbjct: 270 TII-AGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIR 328
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ ++ +++SLI YA C + +Y VF ++ ++D +SWNS+I+G V+ G F++ ++
Sbjct: 329 QGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKF 388
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+R+M + +KP + ++ ACA L G + +I +NG
Sbjct: 389 FRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNG 431
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH + + Y AS L A T Y ++F + + + +WN++I
Sbjct: 320 KEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSY--RVFTLLTERDGISWNSIIAGCV 377
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ + F Q++ + P ++ ++ A A +G+ +HG F++++
Sbjct: 378 QNGLFDEGLKFFRQMLM-AKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENI 436
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I++SL+ YA CG++ A +F + +D+VSW +MI G G AIEL+ +M+ E
Sbjct: 437 FIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTE 496
Query: 215 NVKPDEVTMVVVLSACA 231
++P+ V + VL+AC+
Sbjct: 497 GIEPNYVAFMAVLTACS 513
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 13 RHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS 72
R P T VN+ R+P + ++ Q +++HAQ+L F + S +
Sbjct: 2 RSPTSTEALVNS-LLRNPLSIKSRSQAQQLHAQVLK---FQASSLCNLSLLLSIYSHINL 57
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L + ++F+ + P W ++IR Y+S P +S F+ ++ S +P+ P V+K
Sbjct: 58 LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGML-ASGLYPDHNVFPSVLK 116
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA 165
A A + +G+++HG + DL N+L++ Y+
Sbjct: 117 ACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYS 154
>gi|449520819|ref|XP_004167430.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like, partial [Cucumis sativus]
Length = 406
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 102/180 (56%), Gaps = 6/180 (3%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
K+FD+IP+ L + LIRAY S++ + F F +V + P+++ +P ++KA +R
Sbjct: 123 KVFDEIPERTLPAYAALIRAYCRSEKWNELFAAFRSMV-DEGILPDKYLVPTILKACSRR 181
Query: 138 VQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
+ G+ HG D+VI N+L+ FY CGDL+ + VF + +KDVVSW +++
Sbjct: 182 QMVKTGKMAHGYAIRKRMVSDIVIENALMDFYGNCGDLSSSINVFDSMSEKDVVSWTALV 241
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
S ++E G +A+E++ M+ +KPD ++ ++S A+ + + +++ G++
Sbjct: 242 SAYIEEGLLNEAMEVFHSMQSSGLKPDLISWNALVSGFARYGETNTALTYLEAMQEEGLR 301
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD----VVSWNSMISGFVEGGFFEKAIELY 208
DL+ N+L+ +A G+ A + ++ V SWN +ISG V+ G+F+ A++++
Sbjct: 268 DLISWNALVSGFARYGETNTALTYLEAMQEEGLRPRVNSWNGVISGCVQNGYFKDALDVF 327
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
M + P+ VT+ +L ACA RDL G V ++ K
Sbjct: 328 INMLLFPENPNSVTVASILPACAGLRDLGLGRAVHAYALK 367
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
T ++L Y M ++ +P + +WN +I + + +F+ ++ P PN T+
Sbjct: 285 TNTALTYLEAMQEEGLRPRVNSWNGVISGCVQNGYFKDALDVFINMLL-FPENPNSVTVA 343
Query: 129 FVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
++ A A +G+A+H ++ + SL+ Y+ CG A +F KK
Sbjct: 344 SILPACAGLRDLGLGRAVHAYALKCELCTNIYVEGSLVDMYSKCGQDDRAEEIFAKAEKK 403
Query: 184 DV 185
++
Sbjct: 404 NI 405
>gi|255540253|ref|XP_002511191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550306|gb|EEF51793.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 118/225 (52%), Gaps = 14/225 (6%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLF---TPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+KR+ MLS F D Y A+++ C + + +ARK FD++P+ NL +WNT+I
Sbjct: 189 VKRVLNYMLSNGFEPDQYMANRVLLVQVKCGM-----MIHARKWFDEMPERNLVSWNTII 243
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
+ ++F +FL +++ T +I+A+A +G+ +H
Sbjct: 244 SGLVDMGDYKEAFRLFL-IMWEEFSDAGSRTFATMIQASAGLGWISIGRQLHSCALKMEV 302
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
DD+ +S +LI Y CG + A+CVF + ++++V+WN++I+G+ G+ E+A+++ E
Sbjct: 303 GDDIFVSCALIDMYGKCGSIEDAHCVFDEMPERNIVAWNTIIAGYALHGYSEEALDMVYE 362
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M V+ D T +V+ CA+ L + + + ++G D+
Sbjct: 363 MRNSGVRMDHFTFSIVVRICARLASLNYAKQAHASLLRHGFGSDI 407
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 16/186 (8%)
Query: 58 ASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
+F CAL S+E A +FD++P+ N+ WNT+I Y+ ++ L
Sbjct: 303 GDDIFVSCALIDMYGKCGSIEDAHCVFDEMPERNIVAWNTIIAGYALHGYSEEA----LD 358
Query: 114 LVY---NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA 165
+VY NS + FT V++ AR + H F D+V +++L+ FY+
Sbjct: 359 MVYEMRNSGVRMDHFTFSIVVRICARLASLNYAKQAHASLLRHGFGSDIVANSALVDFYS 418
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
G + A VF + K+V+SWN++I+G+ G + AIEL+ +M E ++P+ VT +
Sbjct: 419 KWGRVETARHVFDQMPCKNVISWNALIAGYGNHGKGDDAIELFEQMLQERIRPNHVTFLA 478
Query: 226 VLSACA 231
VLSAC+
Sbjct: 479 VLSACS 484
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 115/219 (52%), Gaps = 8/219 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IHA + + DP + L S YARK+ D+ +P+L +W+ LI Y+
Sbjct: 77 QIHAHITKSGLSDDPSIRNHLIN--LYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQ 134
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLV 155
+ + M F ++ + NEFT V+KA + R+G+ +HG+ FE D+
Sbjct: 135 NGLGGGALMAFHEM-HLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVF 193
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
++N+L+ YA C + + +F I +++VVSWN++ S +V+ F +A+ L+ EM +
Sbjct: 194 VANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSG 253
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+KP+E ++ +++AC RD G + ++ K G D
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWD 292
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 15/239 (6%)
Query: 26 HQRHPHFLTNQKQLKR-IHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFD 81
H+ H L Q+KR +H+ ++ D D + + L ++ C L LE AR F+
Sbjct: 337 HEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDL-----LEDARMAFN 391
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
+P+ +L WN +I YS E +++ +F+++ F N+ TL ++K+ A
Sbjct: 392 LLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGF-NQTTLSTILKSTAGLQVVH 450
Query: 142 VGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
V + +HG+ F D+ + NSLI Y C + A +F D+VS+ SMI+ +
Sbjct: 451 VCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYA 510
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ G E+A++L+ EM+ +KPD +L+ACA E G + HI K G +D+
Sbjct: 511 QYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDI 569
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 101/196 (51%), Gaps = 8/196 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H + + F D Y + L + S +E A ++F++ +L ++ ++I AY+
Sbjct: 453 RQVHGLSVKSGFHSDIYVVNSLID--SYGKCSHVEDAERIFEECTIGDLVSFTSMITAYA 510
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ ++ +FL++ + P+ F ++ A A F G+ +H F D+
Sbjct: 511 QYGQGEEALKLFLEM-QDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDI 569
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
NSL++ YA CG + A F + ++ +VSW++MI G + G +A++L+ +M E
Sbjct: 570 FAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKE 629
Query: 215 NVKPDEVTMVVVLSAC 230
V P+ +T+V VL AC
Sbjct: 630 GVSPNHITLVSVLGAC 645
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 8/178 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H ++ + F D + A+ L A ++++FD+IP+ N+ +WN L Y
Sbjct: 177 KQVHGVVVVSGFEGDVFVANTLVVMYA--KCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
D ++ +F ++V S PNEF+L ++ A G+ IHG ++ D
Sbjct: 235 QXDFCGEAVGLFYEMVL-SGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP 293
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+N+L+ YA GDLA A VF I + D+VSWN++I+G V E+A+EL +M+
Sbjct: 294 FSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Query: 111 FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA 165
L L+ + P + ++ R G IH DD I N LI+ Y+
Sbjct: 43 ILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYS 102
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
C A + + D+VSW+++ISG+ + G A+ + EM + VK +E T
Sbjct: 103 KCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSS 162
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
VL AC+ +DL G V + +G + D+
Sbjct: 163 VLKACSIVKDLRIGKQVHGVVVVSGFEGDV 192
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 102/183 (55%), Gaps = 6/183 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
+++ AR+ FD++P+ ++ W+T+I YS + P +S +F ++ + PNE TL V+
Sbjct: 259 AIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCK-PNEVTLVGVL 317
Query: 132 KAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A A+ +G+ I E + + ++LI Y CG +A A VF + +K V+
Sbjct: 318 SACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVI 377
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+WNSMI G GF E AI LY EM + V+P+E+T + +L+AC ++ G+ +
Sbjct: 378 AWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEM 437
Query: 247 EKN 249
+KN
Sbjct: 438 KKN 440
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 26/252 (10%)
Query: 24 NGHQRHPHFLTNQKQLKRIHAQMLSTDFFF------------------DPYSASKLFTPC 65
G Q H H L + L + Q DF+ DP + L T
Sbjct: 96 QGTQTHCHALV-RGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLIT-- 152
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
S +E AR++FD +P+ +WN++I Y+ E ++ +F Q++ PN
Sbjct: 153 GYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGAS-PNAI 211
Query: 126 TLPFVIKAAARPVQFRVGQ-AIHGMFEDDL---VISNSLIHFYAVCGDLAMAYCVFVMIG 181
T+ V A+ G+ A + E+DL ++ +L+ Y C + A F +
Sbjct: 212 TITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMP 271
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
++DVV+W++MI+G+ G +++EL+ M+ N KP+EVT+V VLSACA+ E G
Sbjct: 272 RRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQ 331
Query: 242 VSSHIEKNGIKM 253
+ S+IE + +
Sbjct: 332 IGSYIESQTLPL 343
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 89/226 (39%), Gaps = 43/226 (19%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
LS S+ AR +FD +P+P + S + L P+
Sbjct: 22 LSDASTYRAARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSG-C 80
Query: 127 LPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAV-------------- 166
+P V+K+ A G H GM D+ + +L+ FYA
Sbjct: 81 IPLVLKSCALSAASCQGTQTHCHALVRGML-GDVFVQTALVDFYAKNGNMDSAVMAFEEM 139
Query: 167 ---------C--------GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
C GD+ A +F + +K SWNSMI+ + GG F++A+ L+
Sbjct: 140 PIKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFD 199
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFG----IWVSSHIEKNGI 251
+M E P+ +T+ V S CAK DLE G WVS +N I
Sbjct: 200 QMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVI 245
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+++ A+ +FD++PQ + +W +I Y+ S + ++ +F+++ + N L
Sbjct: 353 GNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGIL-NRSALACA 411
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ + A +G+ +HG F+ + N+L+ Y CG + A+ VF I +KD+
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
VSWN+MI+G+ GF ++A+ L+ M++ +KPD+VT+V VLSAC+
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESMKM-TIKPDDVTLVGVLSACS 516
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 89/181 (49%), Gaps = 6/181 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L AR++F+++P +++ W ++ + + ++ IF ++ P NE + +I
Sbjct: 262 LSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM----PE-KNEVSWNAMIA 316
Query: 133 AAARPVQFRVGQAIHGMFEDDLVIS-NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
+ Q + + S N+++ YA CG++ A +F + ++D +SW +M
Sbjct: 317 GYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAM 376
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
ISG+ + G E+A+ L+ +M+ + + + LS+CA+ LE G + + K G
Sbjct: 377 ISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGF 436
Query: 252 K 252
+
Sbjct: 437 Q 437
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
I ++ WN I AY + + +F N + T +I +F
Sbjct: 55 IVDSDIVKWNRKISAYMRKGQCESALSVF-----NGMRRRSTVTYNAMISGYLSNNKFDC 109
Query: 143 GQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
+ + M + DL+ N ++ Y G+L+ A +F + +KDVVSWN+M+SGF + GF
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
E+A +++ +M V+N E++ +LSA + +E
Sbjct: 170 EEARKIFDQMLVKN----EISWNGLLSAYVQNGRIE 201
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+L AR +F+Q+P+ ++ +WN ++ ++ + ++ IF Q++ NE + +
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML-----VKNEISWNGL 190
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVIS-NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ A + + + + D ++S N L+ Y L A +F + +D +SWN
Sbjct: 191 LSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWN 250
Query: 190 SMISGFVEGGFFEKAIELYREMEVENV 216
MI+G+ + G +A L+ E+ + +V
Sbjct: 251 IMITGYAQNGLLSEARRLFEELPIRDV 277
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 13/175 (7%)
Query: 67 LSTFSS---LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
LS F+ +E ARK+FDQ+ N +WN L+ AY + + +F +S
Sbjct: 160 LSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLF-----DSKMDWE 214
Query: 124 EFTLPFVIKAAARPVQFRVGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ ++ R + +++ M D + N +I YA G L+ A +F +
Sbjct: 215 IVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPI 274
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+DV +W +M+SGFV+ G ++A ++ EM +N EV+ +++ + + +E
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKN----EVSWNAMIAGYVQSQQIE 325
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 37/227 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFT 126
S S+ AR++FD+ P ++ +WNTLI Y S P ++ +F +LV + P+E T
Sbjct: 167 SVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVT 226
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ + A+ +G+ +H + V + N+++ Y CG L +A VF I
Sbjct: 227 MIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERID 286
Query: 182 KKDVVSWNSMISGFVEGGFFE-------------------------------KAIELYRE 210
K VVSW +MI G G E +AI L+ E
Sbjct: 287 NKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHE 346
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M+ V P+E+TMV +LSAC++ LE G+WV +I+++ + + +
Sbjct: 347 MQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVAL 393
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ +E AR +FD++P+ +++ WN L+ Y + + ++ +F ++ S PNE T+
Sbjct: 301 ARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEM-QESKVDPNEITM 359
Query: 128 PFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ A ++ +G +H + + + SL+ YA CG++ A C+F I
Sbjct: 360 VNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPD 419
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
K+ ++W +MI G G ++AIE ++ M ++PDE+T + VLSAC
Sbjct: 420 KNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACC 468
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 113/215 (52%), Gaps = 19/215 (8%)
Query: 55 PYSASKLFTPCALSTFSS---LEYARKMFDQIPQP--NLYTWNTLIRAYSSSDE----PI 105
P+S +L ALS +S L +A + +P P + +N RA S
Sbjct: 44 PFS-DRLVAAFALSDPASPRPLLHALAILASLPSPPDSASPYNAAFRALSLCPHRHLVDR 102
Query: 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR-VGQAIHGM-----FEDDLVISNS 159
++ L+ +S P+ T PF++KA AR +Q+R G A+ G F D+ + N+
Sbjct: 103 HCLPLYRALLCSSSARPDHLTFPFLLKACAR-LQYRPYGAAVLGHVQKLGFSADVFVVNA 161
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM--EVENVK 217
+HF++V G + +A +F +DVVSWN++I G+V G +A+EL+ + + + V+
Sbjct: 162 GVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVR 221
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
PDEVTM+ +S CA+ DLE G + ++ G++
Sbjct: 222 PDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVR 256
>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 115/224 (51%), Gaps = 14/224 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++H ++ ++ PY A+KL + C L+ R++FD + + N++ W +I
Sbjct: 25 KQVHECIIKSEMEQHPYVANKLMSIYIRCG-----RLQNTREVFDTLVEKNVFNWTIMIG 79
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
Y+ ++ + ++ ++ N PNE T ++KA P+ + G+ IH F+
Sbjct: 80 GYAENNHFEDAIEVYNKMRQNGVQ-PNEITFFNILKACTSPMALKWGRKIHDHIRHAGFQ 138
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL + N+LIH YA CG + A VF + +D+++WN MI V+ G +A L+ +M
Sbjct: 139 SDLRLGNALIHMYARCGSMDDARLVFNGMVDRDIITWNVMIGRLVQHGRGHEAFSLFLQM 198
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ E PD T + +L+A A L + V SH + G++ D+
Sbjct: 199 QREGFVPDTTTYLSMLNANACTGALGWVKEVHSHALRAGLESDV 242
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 14/225 (6%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
++++H FD + L + C S++ AR++F + ++ +W +I
Sbjct: 328 VRKVHDDAAKVGLDFDVRVGNALVHMYAKCG-----SMDDARRVFYGMVDRDVVSWTVMI 382
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP-----VQFRVGQAIHGMF 150
+ ++F +FLQ+ + PN T ++ A V+ A++
Sbjct: 383 GGLAQHGFGREAFSLFLQM-QREGFVPNLTTYLSILNGKASTGALEWVKEVHTHAVNAEL 441
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ L + N+LIH YA CG + A VF + +D++SWN+MI G + G +A + E
Sbjct: 442 DSHLRVGNALIHMYAKCGSIENARLVFDRMEDRDIISWNAMIGGLAQNGHGREAFSHFLE 501
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M+ E PD T+V +L+ACA R L+ V SH + G++ DL
Sbjct: 502 MQREGFIPDAATLVSILNACASTRALDRVKEVHSHALEAGLESDL 546
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 6/189 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+E AR +FD++ ++ +WN +I + + ++F FL++ + P+ TL +
Sbjct: 459 GSIENARLVFDRMEDRDIISWNAMIGGLAQNGHGREAFSHFLEM-QREGFIPDAATLVSI 517
Query: 131 IKAAARPVQF-RVGQ----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A RV + A+ E DL + ++L+H YA CG + A VF + +D+
Sbjct: 518 LNACASTRALDRVKEVHSHALEAGLESDLRVGSALVHTYAKCGRIDDARLVFEGMASRDI 577
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
++WN MI G + G +A L+ +M+ PD +T + +L LE+ V H
Sbjct: 578 ITWNVMIGGLAQHGREHEAFSLFLQMQDVGFVPDAITYLSILGGNVSIEALEWVKEVHRH 637
Query: 246 IEKNGIKMD 254
+ G D
Sbjct: 638 AVRAGFDTD 646
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 9/213 (4%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+K +H+ L D + L A S S++ AR +FD++ + N+ TWN++I
Sbjct: 226 VKEVHSHALRAGLESDVRVGTALVHMYARS--GSIKDARLVFDKMTERNIITWNSMIGGL 283
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK-AAARPVQFRVGQAIHG-----MFED 152
+ +++F +F Q+ P+ T ++ A A + + +H +
Sbjct: 284 AQHGCGLEAFSLFRQM-QREGLVPDAITYVNILNNACASTGALQWVRKVHDDAAKVGLDF 342
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N+L+H YA CG + A VF + +DVVSW MI G + GF +A L+ +M+
Sbjct: 343 DVRVGNALVHMYAKCGSMDDARRVFYGMVDRDVVSWTVMIGGLAQHGFGREAFSLFLQMQ 402
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
E P+ T + +L+ A LE+ V +H
Sbjct: 403 REGFVPNLTTYLSILNGKASTGALEWVKEVHTH 435
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 110/231 (47%), Gaps = 19/231 (8%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K ++IH + F D + L + C S++ AR +F+ + ++ TWN
Sbjct: 123 KWGRKIHDHIRHAGFQSDLRLGNALIHMYARCG-----SMDDARLVFNGMVDRDIITWNV 177
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP-----VQFRVGQAIHG 148
+I ++F +FLQ+ + P+ T ++ A A V+ A+
Sbjct: 178 MIGRLVQHGRGHEAFSLFLQM-QREGFVPDTTTYLSMLNANACTGALGWVKEVHSHALRA 236
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
E D+ + +L+H YA G + A VF + ++++++WNSMI G + G +A L+
Sbjct: 237 GLESDVRVGTALVHMYARSGSIKDARLVFDKMTERNIITWNSMIGGLAQHGCGLEAFSLF 296
Query: 209 REMEVENVKPDEVTMVVVL-SACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
R+M+ E + PD +T V +L +ACA L+ WV + + K+ L F+
Sbjct: 297 RQMQREGLVPDAITYVNILNNACASTGALQ---WVRK-VHDDAAKVGLDFD 343
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
++K +H+ L D S L + C ++ AR +F+ + ++ TWN +
Sbjct: 529 RVKEVHSHALEAGLESDLRVGSALVHTYAKCG-----RIDDARLVFEGMASRDIITWNVM 583
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA-----AARPVQFRVGQAIHGM 149
I + ++F +FLQ+ + + P+ T ++ A V+ A+
Sbjct: 584 IGGLAQHGREHEAFSLFLQM-QDVGFVPDAITYLSILGGNVSIEALEWVKEVHRHAVRAG 642
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFV--MIGKKDVVSWNSMISGFVEGGFFEKAI 205
F+ D +S++L+H Y CGD+ A F M+ D +W ++ G E A+
Sbjct: 643 FDTDPRVSSALVHMYTKCGDIDNAKLHFTPNMLPDLDGTAWGDLLDACRNHGDVEMAV 700
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 30/247 (12%)
Query: 27 QRHPHF-----LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPC---ALSTFSSLEYARK 78
Q+HP T + L ++HA + + P ++L T C + + L YAR+
Sbjct: 30 QQHPLLPYLPQCTTLRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQ 89
Query: 79 MFDQIPQPNLYTW-NTLIRAYSS----------SDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+FD+IP P W NTL+R Y+ ++E + F+ L+ P+ +T
Sbjct: 90 VFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLE----EGVAPDTYTF 145
Query: 128 PFVIKAAARPVQFRVGQAIHGMF------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
++KA A G+ HG+ E + V+ +LI+ YA CGD A +F +
Sbjct: 146 VSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLP-TLINMYAECGDARAARTMFGRVD 204
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+ VVS+N+MI+ V +A+ L+REM+ + +K VT++ VLSACA LE G W
Sbjct: 205 GECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRW 264
Query: 242 VSSHIEK 248
+ ++ K
Sbjct: 265 IHEYVRK 271
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR MF ++ + ++N +I A S P ++ ++F ++ TL V+ A A
Sbjct: 196 ARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKL-TSVTLISVLSACA 254
Query: 136 RPVQFRVGQAIHGMFE----DDLV-ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ IH D LV ++ +LI Y CG L A VF + +D +W+
Sbjct: 255 LLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSV 314
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI + + +AI L+ EM+ + +KPD+VT + VL AC+
Sbjct: 315 MIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACS 355
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 20/213 (9%)
Query: 38 QLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
+ K+IH L D + ++L+ C + + AR++FD+IP P++ WN +
Sbjct: 26 EAKKIHQHFLKNTSNADSSVLHKLTRLYLSC-----NQVVLARRLFDEIPNPSVILWNQI 80
Query: 95 IRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG--- 148
IRAY+ + D I + L L PN++T PFV+KA + + G IH
Sbjct: 81 IRAYAWNGPFDGAIDLYHSMLHLGVR----PNKYTYPFVLKACSGLLAIEDGVEIHSHAK 136
Query: 149 MF--EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
MF E D+ + +L+ FYA CG L A +F + +DVV+WN+MI+G G + A++
Sbjct: 137 MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQ 196
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
L +M+ E + P+ T+V VL + + L G
Sbjct: 197 LIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 5/187 (2%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L YARK+FD + N +W+ +I Y SD ++ +F Q++ P TL V++
Sbjct: 261 LLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLR 320
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A+ G+ +H D+++ N+L+ YA CG + A F + KD VS
Sbjct: 321 ACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVS 380
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+++++SG V+ G A+ ++R M++ + PD TM+ VL AC+ L+ G ++
Sbjct: 381 FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI 440
Query: 248 KNGIKMD 254
G D
Sbjct: 441 VRGFATD 447
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 21/224 (9%)
Query: 43 HAQM--LSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA--- 97
HA+M L +D F + + C + L A+++F + ++ WN +I
Sbjct: 134 HAKMFGLESDVFV-CTALVDFYAKCGI-----LVEAQRLFSSMSHRDVVAWNAMIAGCSL 187
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y D+ +Q M + PN T+ V+ G+A+HG F++
Sbjct: 188 YGLCDDAVQLIMQMQE----EGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDN 243
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+V+ L+ YA C L A +F ++G ++ VSW++MI G+V ++A+EL+ +M
Sbjct: 244 GVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMI 303
Query: 213 VEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+++ + P VT+ VL ACAK DL G + +I K G +D+
Sbjct: 304 LKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDI 347
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 109/236 (46%), Gaps = 11/236 (4%)
Query: 1 METLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASK 60
+E ++ P P TL R LT+ + +++H ++ D +
Sbjct: 296 LELFDQMILKDAMDPTPVTL---GSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNT 352
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L + + ++ A + FD + + +++ ++ + + IF +++ S
Sbjct: 353 LLS--MYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIF-RMMQLSGI 409
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
P+ T+ V+ A + + G HG F D +I N+LI Y+ CG ++ A
Sbjct: 410 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFARE 469
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
VF + + D+VSWN+MI G+ G +A+ L+ ++ +KPD++T + +LS+C+
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D + + L Y C + +A +F I V+ WN +I + G F+ AI+LY M
Sbjct: 42 DSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSML 101
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V+P++ T VL AC+ +E G+ + SH + G++ D+
Sbjct: 102 HLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDV 144
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 105/187 (56%), Gaps = 6/187 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A ++FD++ ++ +WN++I Y S+ + I+ Q++Y + T+ V+
Sbjct: 64 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV-DLATIISVLVG 122
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A+ +G+A+H + FE + SN+L+ Y+ CGDL A VF +G+++VVSW
Sbjct: 123 CAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 182
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
SMI+G+ G+ + AI L ++ME E VK D V + +L ACA+ L+ G V +I+
Sbjct: 183 TSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 242
Query: 249 NGIKMDL 255
N + +L
Sbjct: 243 NNMASNL 249
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 21/232 (9%)
Query: 45 QMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ----PNLYTWNTLIRAYSS 100
QM D + + + CA S SL+ + + D I NL+ N L+ Y+
Sbjct: 204 QMEKEGVKLDVVAITSILHACARS--GSLDNGKDVHDYIKANNMASNLFVCNALMDMYAK 261
Query: 101 SDEPIQSFMIFLQLVYN---------SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+ +F +V P+ T+ ++ A A G+ IHG
Sbjct: 262 CGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYIL 321
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+ D ++N+L+ Y CG L +A +F MI KD+VSW MI+G+ G+ +AI
Sbjct: 322 RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIA 381
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ EM ++PDEV+ + +L AC+ LE G W +I KN ++ E
Sbjct: 382 TFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-WRFFYIMKNDFNIEPKLE 432
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 20/129 (15%)
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVF-VMIGK-------------------KDVVSW 188
M + ++ + N ++ YA GD + C+F +M+ K +DV+SW
Sbjct: 22 MEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRSESASELFDKLCDRDVISW 81
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
NSMISG+V G E+ + +Y++M + D T++ VL CAK L G V S K
Sbjct: 82 NSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIK 141
Query: 249 NGIKMDLTF 257
+ + + F
Sbjct: 142 SSFERRINF 150
>gi|22328675|ref|NP_193307.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75161477|sp|Q8VYH0.1|PP313_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g15720
gi|18175616|gb|AAL59897.1| unknown protein [Arabidopsis thaliana]
gi|20465541|gb|AAM20253.1| unknown protein [Arabidopsis thaliana]
gi|332658240|gb|AEE83640.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 616
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 11/226 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
TN +H L F D ++ + L + + ARK+FD++ +PN+ +W +
Sbjct: 43 TNAAFTNLLHTLTLKLGFASDTFTVNHLVI--SYVKLKEINTARKLFDEMCEPNVVSWTS 100
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-- 151
+I Y+ +P + +F ++ + P PNE+T V KA + + R+G+ IH E
Sbjct: 101 VISGYNDMGKPQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEIS 160
Query: 152 ---DDLVISNSLIHFYAVCGDLAMAYCVF-VMIG-KKDVVSWNSMISGFVEGGFFEKAIE 206
++V+S+SL+ Y C D+ A VF MIG ++VVSW SMI+ + + +AIE
Sbjct: 161 GLRRNIVVSSSLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIE 220
Query: 207 LYREME--VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
L+R + + + ++ + V+SAC+ L++G + + G
Sbjct: 221 LFRSFNAALTSDRANQFMLASVISACSSLGRLQWGKVAHGLVTRGG 266
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 21/233 (9%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQ--PN 87
L + K IHA++ + + +S L + C + +E AR++FD + N
Sbjct: 144 LAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKC-----NDVETARRVFDSMIGYGRN 198
Query: 88 LYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ +W ++I AY+ + E I+ F F + + N+F L VI A + + + G+
Sbjct: 199 VVSWTSMITAYAQNARGHEAIELFRSFNAALTSDR--ANQFMLASVISACSSLGRLQWGK 256
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
HG+ +E + V++ SL+ YA CG L+ A +F+ I V+S+ SMI + G
Sbjct: 257 VAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHG 316
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI-WVSSHIEKNGI 251
E A++L+ EM + P+ VT++ VL AC+ + G+ ++S EK G+
Sbjct: 317 LGEAAVKLFDEMVAGRINPNYVTLLGVLHACSHSGLVNEGLEYLSLMAEKYGV 369
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 119 PYFPNEF----TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGD 169
P + N+F T F++ + +H + F D N L+ Y +
Sbjct: 20 PQYKNDFFHLKTKAFLVHKLSESTNAAFTNLLHTLTLKLGFASDTFTVNHLVISYVKLKE 79
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLS 228
+ A +F + + +VVSW S+ISG+ + G + A+ ++++M + V P+E T V
Sbjct: 80 INTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPVPPNEYTFASVFK 139
Query: 229 ACAKKRDLEFGIWVSSHIEKNGIKMDL 255
AC+ + G + + +E +G++ ++
Sbjct: 140 ACSALAESRIGKNIHARLEISGLRRNI 166
>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Cucumis sativus]
Length = 743
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 5/219 (2%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ D Y S L + A F + RK+FD + + N+ W T+I +YS
Sbjct: 71 LHQSVVVNGLSHDSYIGSSLISFYA--KFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSRE 128
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR--PVQFRVGQAIHGMFEDDLVISNS 159
+ +F +F Q+ S P TL ++ ++ + I FE DL +SNS
Sbjct: 129 GDIDIAFSMFKQM-RESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALSNS 187
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
+++ Y CG +A A +F I +D+VSWNS++S + + G E+ ++L + M++E++KPD
Sbjct: 188 MVNMYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPD 247
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ T LSA A K DL G V + K+G+ +D E
Sbjct: 248 KQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVE 286
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 12/188 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYS---SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
AR++F I ++ +WN+L+ AYS +++E +Q LQ + P++ T +
Sbjct: 201 ARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQ----LLQAMKIEDIKPDKQTFCSALS 256
Query: 133 AAARPVQFRVGQAIHG-MFEDDLVIS----NSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A+A R+G+ +HG M +D L I ++L+ Y C L AY VF +KDVV
Sbjct: 257 ASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVM 316
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W +MISG V+ +KA+ ++ +M NVKP T+ L+ACA+ + G + ++
Sbjct: 317 WTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVL 376
Query: 248 KNGIKMDL 255
+ GI +D+
Sbjct: 377 RQGIMLDI 384
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 14/220 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H ML D + S L + C L+ A K+F + ++ W +I
Sbjct: 268 KLVHGLMLKDGLNIDQHVESALVVLYLRC-----RCLDPAYKVFKSTTEKDVVMWTAMIS 322
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---- 152
+D ++ +F Q++ S P+ TL + A A+ +G +IHG
Sbjct: 323 GLVQNDCADKALGVFYQMI-ESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIM 381
Query: 153 -DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ NSL+ YA C L + +F + +KD+VSWN++++G + G+ K I + EM
Sbjct: 382 LDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEM 441
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
++PD +T+ +L AC L G W+ + + ++ +
Sbjct: 442 RKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSL 481
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 98/213 (46%), Gaps = 8/213 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH +L D + + L T A + L+ + +F+++ + +L +WN ++ ++
Sbjct: 371 IHGYVLRQGIMLDIPAQNSLVTMYA--KCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAK- 427
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI----- 156
+ + + F + S P+ T+ +++A G+ IH +I
Sbjct: 428 NGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIMT 487
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+L+ Y CG+L A F + ++D+V+W+++I G+ G E A+ Y E +
Sbjct: 488 ETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLGTGM 547
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+P+ V + VLSAC+ + G+ + + K+
Sbjct: 548 EPNHVIFISVLSACSHGGLISKGLSIYESMTKD 580
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 20/213 (9%)
Query: 38 QLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
+ K+IH L D + ++L+ C + + AR++FD+IP P++ WN +
Sbjct: 26 EAKKIHQHFLKNTSNADSSVLHKLTRLYLSC-----NQVVLARRLFDEIPNPSVILWNQI 80
Query: 95 IRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG--- 148
IRAY+ + D I + L L PN++T PFV+KA + + G IH
Sbjct: 81 IRAYAWNGPFDGAIDLYHSMLHLGVR----PNKYTYPFVLKACSGLLAIEDGVEIHSHAK 136
Query: 149 MF--EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
MF E D+ + +L+ FYA CG L A +F + +DVV+WN+MI+G G + A++
Sbjct: 137 MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQ 196
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
L +M+ E + P+ T+V VL + + L G
Sbjct: 197 LIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 5/187 (2%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L YARK+FD + N +W+ +I Y +SD ++ +F Q++ P TL V++
Sbjct: 261 LLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLR 320
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A+ G+ +H D+++ N+L+ YA CG + A F + KD VS
Sbjct: 321 ACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVS 380
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+++++SG V+ G A+ ++R M++ + PD TM+ VL AC+ L+ G ++
Sbjct: 381 FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI 440
Query: 248 KNGIKMD 254
G D
Sbjct: 441 VRGFATD 447
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 21/224 (9%)
Query: 43 HAQM--LSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA--- 97
HA+M L +D F + + C + L A+++F + ++ WN +I
Sbjct: 134 HAKMFGLESDVFV-CTALVDFYAKCGI-----LVEAQRLFSSMSHRDVVAWNAMIAGCSL 187
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
Y D+ +Q M + PN T+ V+ G+A+HG F++
Sbjct: 188 YGLCDDAVQLIMQMQE----EGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDN 243
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+V+ L+ YA C L A +F ++G ++ VSW++MI G+V ++A+EL+ +M
Sbjct: 244 GVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMI 303
Query: 213 VEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+++ + P VT+ VL ACAK DL G + +I K G +D+
Sbjct: 304 LKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDI 347
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 110/236 (46%), Gaps = 11/236 (4%)
Query: 1 METLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASK 60
+E ++ P P TL R LT+ + +++H ++ D +
Sbjct: 296 LELFDQMILKDAMDPTPVTL---GSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNT 352
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L + + ++ A + FD++ + +++ ++ + + IF +++ S
Sbjct: 353 LLS--MYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIF-RMMQLSGI 409
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
P+ T+ V+ A + + G HG F D +I N+LI Y+ CG ++ A
Sbjct: 410 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFARE 469
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
VF + + D+VSWN+MI G+ G +A+ L+ ++ +KPD++T + +LS+C+
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D + + L Y C + +A +F I V+ WN +I + G F+ AI+LY M
Sbjct: 42 DSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSML 101
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V+P++ T VL AC+ +E G+ + SH + G++ D+
Sbjct: 102 HLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDV 144
>gi|2244928|emb|CAB10350.1| hypothetical protein [Arabidopsis thaliana]
gi|7268320|emb|CAB78614.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 11/226 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
TN +H L F D ++ + L + + ARK+FD++ +PN+ +W +
Sbjct: 43 TNAAFTNLLHTLTLKLGFASDTFTVNHLVI--SYVKLKEINTARKLFDEMCEPNVVSWTS 100
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-- 151
+I Y+ +P + +F ++ + P PNE+T V KA + + R+G+ IH E
Sbjct: 101 VISGYNDMGKPQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEIS 160
Query: 152 ---DDLVISNSLIHFYAVCGDLAMAYCVF-VMIG-KKDVVSWNSMISGFVEGGFFEKAIE 206
++V+S+SL+ Y C D+ A VF MIG ++VVSW SMI+ + + +AIE
Sbjct: 161 GLRRNIVVSSSLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIE 220
Query: 207 LYREME--VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
L+R + + + ++ + V+SAC+ L++G + + G
Sbjct: 221 LFRSFNAALTSDRANQFMLASVISACSSLGRLQWGKVAHGLVTRGG 266
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 21/233 (9%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQ--PN 87
L + K IHA++ + + +S L + C + +E AR++FD + N
Sbjct: 144 LAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKC-----NDVETARRVFDSMIGYGRN 198
Query: 88 LYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ +W ++I AY+ + E I+ F F + + N+F L VI A + + + G+
Sbjct: 199 VVSWTSMITAYAQNARGHEAIELFRSFNAALTSDR--ANQFMLASVISACSSLGRLQWGK 256
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
HG+ +E + V++ SL+ YA CG L+ A +F+ I V+S+ SMI + G
Sbjct: 257 VAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHG 316
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI-WVSSHIEKNGI 251
E A++L+ EM + P+ VT++ VL AC+ + G+ ++S EK G+
Sbjct: 317 LGEAAVKLFDEMVAGRINPNYVTLLGVLHACSHSGLVNEGLEYLSLMAEKYGV 369
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 119 PYFPNEF----TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGD 169
P + N+F T F++ + +H + F D N L+ Y +
Sbjct: 20 PQYKNDFFHLKTKAFLVHKLSESTNAAFTNLLHTLTLKLGFASDTFTVNHLVISYVKLKE 79
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLS 228
+ A +F + + +VVSW S+ISG+ + G + A+ ++++M + V P+E T V
Sbjct: 80 INTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPVPPNEYTFASVFK 139
Query: 229 ACAKKRDLEFGIWVSSHIEKNGIKMDL 255
AC+ + G + + +E +G++ ++
Sbjct: 140 ACSALAESRIGKNIHARLEISGLRRNI 166
>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Cucumis sativus]
Length = 576
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 112/218 (51%), Gaps = 8/218 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H+Q+L F D + L A + L+ A+K+FD++PQP++ +WN LI ++
Sbjct: 124 QLHSQLLRFGFNADVLLQTTLLD--AYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQ 181
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLV 155
P + M F ++ + PN T+ + A ++ + G+++H ++
Sbjct: 182 GSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQ 241
Query: 156 ISNSLIHFYAVCGDLAMAYCVFV-MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N +I YA CG + AY VF M K +++WN+MI F G KA++L+ ++
Sbjct: 242 VCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRS 301
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+ PD V+ + VL AC +E G+ + + + + G++
Sbjct: 302 GMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLE 339
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 9/217 (4%)
Query: 38 QLKRIHAQML-STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
Q+K++ A ++ + DF F S +KL CA+S+F L YA +F IP P+ WN +IR
Sbjct: 16 QIKQLQANLIINGDFHFSS-SRTKLLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIR 74
Query: 97 AYSSSDEPIQSFMIFLQLVY-NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
+ S +P + + + N + + T F +KA AR + +H F
Sbjct: 75 GTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGF 134
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D+++ +L+ YA GDL +A +F + + D+ SWN++I+GF +G AI ++
Sbjct: 135 NADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKR 194
Query: 211 MEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
M+V+ N++P+ VT+ L AC++ L+ G V +I
Sbjct: 195 MKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYI 231
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 35/222 (15%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+E A+K+FD+IP+ ++ +WN LI +Y + + +F ++ S +E T+
Sbjct: 160 GALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATV 219
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDL----VISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
+ A + VG+ IH + +L I N+L+ Y CG + A +F +G K
Sbjct: 220 VSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNK 279
Query: 184 DVVSWNSMISGFVEGG-------------------------------FFEKAIELYREME 212
+V+ W SM+SG+ G F++A++L+R+M+
Sbjct: 280 NVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQ 339
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++ ++PD +V +L CA+ LE G W+ +I +N I +D
Sbjct: 340 IQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLD 381
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 108/214 (50%), Gaps = 5/214 (2%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
L +IHA++ + + +K+ C + S+ YA ++ + P L +N +I+A
Sbjct: 31 HLTQIHAKIFRVGLQDNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCLVMYNLMIKA 90
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---DL 154
+ DE + ++ + P+ FTLP V KA + G+ +HG D
Sbjct: 91 VAK-DENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSGFDA 149
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ NS++ Y G + +A VF I ++DVVSWN +IS +V FE AI ++R M E
Sbjct: 150 CVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRE 209
Query: 215 -NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
N+K DE T+V LSAC+ R+ E G + +++
Sbjct: 210 SNLKADEATVVSTLSACSVLRNQEVGEEIHRYVD 243
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SL+ AR++F++ P ++ W +I Y + ++ +F ++ P+ F L +
Sbjct: 295 GSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQR-LRPDNFILVTL 353
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+K A+ G+ +HG + D V+ +L+ YA CG + A VF + ++D
Sbjct: 354 LKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDT 413
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
SW S+I G G KA++ + +ME +PD++T + VL+AC
Sbjct: 414 ASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVLTAC 458
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 114/210 (54%), Gaps = 14/210 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
N Q+K++HAQ++ + D + A KL + ALS A ++F+Q+ +PN++ N+
Sbjct: 30 ANLNQVKQLHAQIIRRNLHEDLHIAPKLIS--ALSLCRQTNLAVRVFNQVQEPNVHLCNS 87
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-- 151
LIRA++ + +P Q+F +F ++ F + FT PF++KA + V + +H E
Sbjct: 88 LIRAHAQNSQPYQAFFVFSEM-QRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKL 146
Query: 152 ---DDLVISNSLIHFYAVCGDLAM--AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
D+ + N+LI Y+ CG L + A +F + ++D VSWNSM+ G V+ G A
Sbjct: 147 GLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARR 206
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDL 236
L+ EM + D ++ +L A+ R++
Sbjct: 207 LFDEMP----QRDLISWNTMLDGYARCREM 232
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 8/180 (4%)
Query: 68 STFSSLEYARKMFDQIPQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
S +E AR MFD++P P N+ TW +I Y+ ++ + Q+V + F
Sbjct: 258 SKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAA 317
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+ ++ A +G IH + + + + N+L+ YA CG+L A+ VF I
Sbjct: 318 VIS-ILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDI 376
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
KKD+VSWN+M+ G G ++AIEL+ M E ++PD+VT + VL +C ++ GI
Sbjct: 377 PKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGI 436
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 88/188 (46%), Gaps = 37/188 (19%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L L AR++FD++PQ +L +WNT++ Y+ E ++F +F +
Sbjct: 194 GLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEK------------ 241
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKK 183
M E + V ++++ Y+ GD+ MA +F + + K
Sbjct: 242 -----------------------MPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAK 278
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+VV+W +I+G+ E G ++A L +M +K D ++ +L+AC + L G+ +
Sbjct: 279 NVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIH 338
Query: 244 SHIEKNGI 251
S ++++ +
Sbjct: 339 SILKRSNL 346
>gi|255576546|ref|XP_002529164.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531388|gb|EEF33223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 453
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 94/166 (56%), Gaps = 7/166 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ ARK+ D++P+ N+ +W T+I Y E + IF++++ + PNE T V+
Sbjct: 233 LKLARKLLDEMPEKNVVSWTTMITGYVQEGESEAALNIFMEMIRDGGVMPNEGTFVNVLG 292
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKKDV 185
A + GQ +H M ++D + ++LI+ Y+ CG+L MA +F ++D+
Sbjct: 293 ACSDLAGLGEGQQVHQMISKTVYQDMPFVVSALINMYSKCGELDMARKMFDNRTTSQRDL 352
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
VSWN M++ + G ++AI L+ EM +PD+++ V +LSAC+
Sbjct: 353 VSWNCMVAAYAHHGCGKEAINLFNEMRALGFEPDDISYVGLLSACS 398
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 36/184 (19%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L+ ++ ARK+FD++P+ N+ +WN +I Y+ + +++F +F +
Sbjct: 164 GLARNGRIDEARKIFDKMPERNVVSWNAMITGYAKNMRLVEAFELFER------------ 211
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
M E DL N++I + +L +A + + +K+V
Sbjct: 212 -----------------------MPERDLPSWNTMITGFIQNKELKLARKLLDEMPEKNV 248
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VSW +MI+G+V+ G E A+ ++ EM + V P+E T V VL AC+ L G V
Sbjct: 249 VSWTTMITGYVQEGESEAALNIFMEMIRDGGVMPNEGTFVNVLGACSDLAGLGEGQQVHQ 308
Query: 245 HIEK 248
I K
Sbjct: 309 MISK 312
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 76 ARKMFDQI-PQPNLYTWNTLIRAYSSSDEPIQSFMI-FLQLVYNSPYFPNEFTLPFVIKA 133
AR++FD+ N+ TW ++ Y ++ +++ + + +++ P + +
Sbjct: 105 ARRLFDRADAMKNVVTWTAMVSGYMRLNQVLEAERVDEARRLFDE--MPKRDVISWTAMV 162
Query: 134 AARPVQFRVGQA---IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
A R+ +A M E ++V N++I YA L A+ +F + ++D+ SWN+
Sbjct: 163 AGLARNGRIDEARKIFDKMPERNVVSWNAMITGYAKNMRLVEAFELFERMPERDLPSWNT 222
Query: 191 MISGFVEGGFFEKAIELYREMEVENV 216
MI+GF++ + A +L EM +NV
Sbjct: 223 MITGFIQNKELKLARKLLDEMPEKNV 248
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 72/144 (50%), Gaps = 13/144 (9%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD++ + ++ TW T+I Y +++ +F + + N T ++
Sbjct: 74 ARQVFDRMLERDVITWTTVITGYIKCRLIVEARRLFDR----ADAMKNVVTWTAMVSGYM 129
Query: 136 RPVQF----RVGQAIHGMFED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
R Q RV +A +F++ D++ +++ A G + A +F + +++VVS
Sbjct: 130 RLNQVLEAERVDEA-RRLFDEMPKRDVISWTAMVAGLARNGRIDEARKIFDKMPERNVVS 188
Query: 188 WNSMISGFVEGGFFEKAIELYREM 211
WN+MI+G+ + +A EL+ M
Sbjct: 189 WNAMITGYAKNMRLVEAFELFERM 212
>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 997
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 14/208 (6%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNL 88
FL Q K++HA + + + D + +S ++ C S+ ++A FD IP P+
Sbjct: 536 FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCG--DMSAAQFA---FDSIPVPDD 590
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
W TLI + E ++ +F Q+ P+EFT+ + KA++ G+ IH
Sbjct: 591 VAWTTLISGCIENGEEERALHVFSQMRLMG-VLPDEFTIATLAKASSCLTALEQGRQIHA 649
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
D + SL+ YA CG + AYC+F I ++ +WN+M+ G + G ++
Sbjct: 650 NALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKE 709
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACA 231
A++L+++ME +KPD+VT + VLSAC+
Sbjct: 710 ALQLFKQMESLGIKPDKVTFIGVLSACS 737
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 13/222 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH + T+ D + ++ L A S ++ A +F + +L WN ++ Y+
Sbjct: 444 KQIHVHAIKTNNVADSFVSTALID--AYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYT 500
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S + ++ +F L++ ++FTL V+K G+ +H ++ DL
Sbjct: 501 QSHDGHKTLELF-ALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDL 559
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+S+ ++ Y CGD++ A F I D V+W ++ISG +E G E+A+ ++ +M +
Sbjct: 560 WVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLM 619
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
V PDE T+ + A + LE G I N +K++ T
Sbjct: 620 GVLPDEFTIATLAKASSCLTALEQG----RQIHANALKLNCT 657
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 88/166 (53%), Gaps = 11/166 (6%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI-----QSFMIFLQLVYNSPYFP 122
S SL YAR++FD++P+ +L +WN+++ AY+ S E + ++F++F +++ +
Sbjct: 92 SKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLF-RILRQDVVYT 150
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
+ TL ++K ++ HG + D ++ +L++ Y G + +F
Sbjct: 151 SRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLF 210
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
+ +DVV WN M+ ++E GF E+AI+L + P+E+T+
Sbjct: 211 EEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITL 256
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 96/188 (51%), Gaps = 12/188 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +F+ + + +L +WN++I + SD +++ +F+QL+ P+ +T+ V+KAA+
Sbjct: 376 ARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLL-RCGLKPDHYTMTSVLKAAS 434
Query: 136 R-PVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKK--DVVS 187
P + + IH D +S +LI Y+ + A +F G+ D+V+
Sbjct: 435 SLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLF---GRNNFDLVA 491
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN+M+SG+ + K +EL+ M + + D+ T+ VL C + G V ++
Sbjct: 492 WNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAI 551
Query: 248 KNGIKMDL 255
K+G +DL
Sbjct: 552 KSGYDLDL 559
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
N ++ Y + + F+ +V S ++ T V+ A R +GQ +H M
Sbjct: 291 NKILSGYLHAGQYSALLKCFMDMV-ESDLECDQVTFILVLATAVRLDSLALGQQVHCMAL 349
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+ L +SNSLI+ Y + +A VF + ++D++SWNS+I+G + +A+
Sbjct: 350 KLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVC 409
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
L+ ++ +KPD TM VL A + L G+ +S I + IK +
Sbjct: 410 LFMQLLRCGLKPDHYTMTSVLKAASS---LPEGLSLSKQIHVHAIKTN 454
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 83/190 (43%), Gaps = 34/190 (17%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSS---SDEPIQSFMIFLQLVYNSPYFPNEFT 126
F ++ R +F+++P ++ WN +++AY +E I F + S PNE T
Sbjct: 200 FGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF----HTSGLHPNEIT 255
Query: 127 LPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
L + + + + GQ FE+ G+ A A +++
Sbjct: 256 LRLLSRISGDDSE--AGQV--KSFEN---------------GNDASAV--------SEII 288
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
S N ++SG++ G + ++ + +M +++ D+VT ++VL+ + L G V
Sbjct: 289 SRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMA 348
Query: 247 EKNGIKMDLT 256
K G+ + LT
Sbjct: 349 LKLGLDLMLT 358
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 114/196 (58%), Gaps = 9/196 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F SL+ +K+FD++ +L +WN++I+AY +++P+++ ++F ++ S P+ TL
Sbjct: 293 AEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRL-SRIQPDCLTL 351
Query: 128 PFVIKAAARPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ ++ + R +++ G F +D+ I N+++ YA G + A VF +
Sbjct: 352 ISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN--VKPDEVTMVVVLSACAKKRDLEFG 239
KDV+SWN++ISG+ + GF +AIE+Y ME E + ++ T V VL AC++ L G
Sbjct: 412 NKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQG 471
Query: 240 IWVSSHIEKNGIKMDL 255
+ + + KNG+ +D+
Sbjct: 472 MKLHGRLLKNGLYLDV 487
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 22/233 (9%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTP-CALSTFSSLEYARKMFDQIPQPNLYT 90
+ TN + K +HA+++ ++ + ++KL C L ++ AR FD I ++Y
Sbjct: 63 YCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLG---NVALARYTFDHIHNRDVYA 119
Query: 91 WNTLIRAYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
WN +I Y S E I+ F +F+ +S P+ T P V+KA G IH
Sbjct: 120 WNLMISGYGRAGYSSEVIRCFSLFM---LSSGLQPDYRTFPSVLKACRNVTD---GNKIH 173
Query: 148 GM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
+ F D+ ++ SLIH Y G + A +F + +D+ SWN+MISG+ + G +
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAK 233
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+A+ L + D VT+V +LSAC + D G+ + S+ K+G++ +L
Sbjct: 234 EALTLSDGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL 282
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
++ AR +F+ +P ++ +WNT+I Y+ + E I+ + I + N+ T
Sbjct: 400 VDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEE--EGGEISANQGTWVS 457
Query: 130 VIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A ++ R G +HG D+ + SL Y CG L A +F I + +
Sbjct: 458 VLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVN 517
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
V WN++I+ G EKA+ L++EM E VKPD +T V +LSAC+ ++ G W
Sbjct: 518 SVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWC 575
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 12/193 (6%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IH L F +D Y A+ L + ++ AR +FD++P ++ +WN +I Y
Sbjct: 171 KIHCLALKFGFMWDVYVAASLIH--LYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQ 228
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLV 155
S ++ + + + T+ ++ A F G IH E +L
Sbjct: 229 SGNAKEALTL-----SDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELF 283
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+SN LI YA G L VF + +D++SWNS+I + +AI L++EM +
Sbjct: 284 VSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSR 343
Query: 216 VKPDEVTMVVVLS 228
++PD +T++ + S
Sbjct: 344 IQPDCLTLISLAS 356
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 37/213 (17%)
Query: 37 KQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q ++H ++L + D + S + ++ C L+ A +F QIP+ N WNT
Sbjct: 469 RQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCG-----RLDDALSLFYQIPRVNSVPWNT 523
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
LI + ++ M+F +++ + P+ T ++ A + G+ M + D
Sbjct: 524 LIACHGFHGHGEKAVMLFKEML-DEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTD 582
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
I+ SL H+ M+ + G E A+ + M +
Sbjct: 583 YGITPSLKHY-------------------------GCMVDLYGRAGQLEIALNFIKSMPL 617
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+ PD +LSAC +++ G S H+
Sbjct: 618 Q---PDASIWGALLSACRVHGNVDLGKIASEHL 647
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 20/230 (8%)
Query: 30 PHFLTNQK------------QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYAR 77
P FL+N++ Q +I+A ++ T + + ++ LFT A S+ S +
Sbjct: 9 PRFLSNERIKSLLSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHS 68
Query: 78 -KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
+F QI P+++ WN +I+AYS P Q + + NS P+ FT PF++KA A
Sbjct: 69 HTLFTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACAN 128
Query: 137 PV----QFRVGQAIHGM---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ QF H + F D+ ++N+L++FY GD+ AY VF +D VS+N
Sbjct: 129 VLISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFN 188
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+MI+GF G ++ EM V+PDE T V +LS C+ D G
Sbjct: 189 TMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIG 238
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 45/240 (18%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFT-PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++H +L F D + + L C F + A K+FD+ + ++NT+I ++
Sbjct: 139 QVHCHVLRNGFGSDVFVNNALLNFYCG---FGDVVNAYKVFDESFVRDCVSFNTMINGFA 195
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-------FED 152
+ F +F ++ P+E+T ++ + +R+G+ +HG+ F
Sbjct: 196 RKGDVSGCFRVFGEM-RGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGG 254
Query: 153 DLVISNSLIHFYAVCGDLAMAYCV---------------------------------FVM 179
++++ N L+ YA CG L MA V F
Sbjct: 255 NVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQ 314
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+G++DVVSW +MISG+ G F++A+EL+ ++E +KPDEV +V LSACA+ LE G
Sbjct: 315 MGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELG 374
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 20/209 (9%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + ++ AR++FDQ+ + ++ +W +I YS + ++ +F++L P+E
Sbjct: 298 AYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKL-EGLGMKPDEV 356
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDD-------LVISNSLIHFYAVCGDLAMAYCVFV 178
+ + A AR +G+ IH + + +++++ YA CG + +A VF
Sbjct: 357 AVVAALSACARLGALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFR 416
Query: 179 MIG--KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
KK +NS+ISG G E A L+ EM + +KPD +T V VLSAC +
Sbjct: 417 KTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLV 476
Query: 237 EFG----------IWVSSHIEKNGIKMDL 255
+FG VS +E G +DL
Sbjct: 477 DFGKKLFESMFTVYGVSPEMEHYGCMVDL 505
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + L AR +FD++PQ + +WN++I Y+ + E +++ +F +++ + P+E
Sbjct: 346 AYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEV 405
Query: 126 TLPFVIKAAARPVQFRVGQ-AIHGMFEDDLVIS----NSLIHFYAVCGDLAMAYCVFVMI 180
T+ V A + +G A+ + E+ + IS NSLI Y+ CG + A +F +
Sbjct: 406 TMVSVFSACGHLGELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEM 465
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+D+VS+N++ISGF E G ++IEL +M+ + ++PD +T + +L+AC+
Sbjct: 466 ATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYIAILTACS 516
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 41/227 (18%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+L+ AR FD++P+ ++ +WN ++ Y+ P ++ +F ++ P+E T V
Sbjct: 214 GNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTV 273
Query: 131 IKAAA------------RPVQFRVG---------------------QAIHGMFEDDLVIS 157
I + + R + VG +A H +FE V
Sbjct: 274 ISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYK 333
Query: 158 -------NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
N++I YA GDL A +F + ++D VSWNSMI+G+ + G KAI+L+ E
Sbjct: 334 YRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEE 393
Query: 211 M-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
M E+ KPDEVTMV V SAC +L G W S +++N I++ ++
Sbjct: 394 MISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQISIS 440
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 34/193 (17%)
Query: 44 AQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDE 103
A +L + + D Y + + A + +E+ARK+FD++P + WN +I Y
Sbjct: 123 AHVLKSGYDRDHYVRNGILGIYA--KYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGN 180
Query: 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHF 163
++ +F ++ + N T +I A+
Sbjct: 181 EEEASTLF-HVMGDQEISRNVITWTTMITGHAKK-------------------------- 213
Query: 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVT 222
G+L A F + ++ VVSWN+M+SG+ +GG E+ I L+ +M NV+PDE T
Sbjct: 214 ----GNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETT 269
Query: 223 MVVVLSACAKKRD 235
V V+S+C+ D
Sbjct: 270 WVTVISSCSSLGD 282
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 91/206 (44%), Gaps = 2/206 (0%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
+TN +L+++HAQ++ + L T C + Y +F P++ +
Sbjct: 13 ITNLHRLRQLHAQLVHHSLHHQNHWVVLLLTQCT-RLLAPSSYTCHIFHAATHPDVRVFT 71
Query: 93 TLIRAYSSSDEPIQ-SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
+++ YS Q +F ++ + PN ++K+A + + ++
Sbjct: 72 FMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNTSFYSVMMKSAGSESMLFLAHVLKSGYD 131
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + N ++ YA G + A +F + + V WN MISG+ + G E+A L+ M
Sbjct: 132 RDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVM 191
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLE 237
+ + + +T +++ AKK +L+
Sbjct: 192 GDQEISRNVITWTTMITGHAKKGNLK 217
>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
Length = 667
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTW-NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
CA SS A + Q+PQP ++ N+L+R+Y+ ++ VY++ +
Sbjct: 56 CACGRPSS---AHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALA-----VYSAMRAFD 107
Query: 124 EFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFV 178
T PF KA A R G+A+H F D + N+LI Y CGD+ A VF
Sbjct: 108 HLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFG 167
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+ + VVSWN++I+G V+ G+ E+A+E++ EM + V D T+V VL ACA+ +DL
Sbjct: 168 AMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNT 227
Query: 239 GIWVSSHIEKNGI 251
G V +E G+
Sbjct: 228 GRAVHRLVEDKGL 240
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 72 SLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SLE AR++FD ++ +W +I AY +D ++ + Q++ + +PN T+ ++
Sbjct: 259 SLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYL 318
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A + + H + + D+ + +LI YA CG + + + + G
Sbjct: 319 LSACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMR-LTLERGSWRA 377
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+WN+ +SG+ G +KAIEL++ M E+V+PD TM +L A A+ DL+ G
Sbjct: 378 ETWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEG 431
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TWN + Y+ S ++ +F +++ S P+ T+ ++ A A + G+ IH
Sbjct: 379 TWNAALSGYTVSGREKKAIELFKRMIAES-VRPDSATMASILPAYAESADLKEGKNIHCF 437
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
F I+ LI Y+ GDL A+ +F + +KDVV+W ++I+G+ G A
Sbjct: 438 LLTLGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTA 497
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
I LY M KP+ VT+ +L AC+ ++ GI V
Sbjct: 498 ILLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKV 535
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 81/203 (39%), Gaps = 31/203 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+ K IH +L+ F A+ L S L+ A +F +P+ ++ W T+I
Sbjct: 429 KEGKNIHCFLLTLGFLRSTEIATGLID--VYSKAGDLDAAWALFQWLPEKDVVAWTTIIA 486
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
Y + +++ ++V S PN T+ ++ A + GM ++ + +
Sbjct: 487 GYGIHGHARTAILLYDRMV-ESGGKPNTVTIATLLYACSHA----------GMIDEGIKV 535
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+ + + + + C+ M+G+ G E+A L ++M E
Sbjct: 536 FKDMRNVHGLMPNGEHYSCLVDMLGR---------------AGRIEEAHRLIQDMPFE-- 578
Query: 217 KPDEVTMVVVLSACAKKRDLEFG 239
P +L AC +++EFG
Sbjct: 579 -PSTSVWGALLGACVLHKNVEFG 600
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 116/219 (52%), Gaps = 8/219 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IHA + + DP + L S + YARK+ D+ +P+L +W+ LI Y+
Sbjct: 77 QIHAHITKSGLSDDPSIRNHLIN--LYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQ 134
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLV 155
+ + M F ++ + NEFT V+KA + R+G+ +HG+ FE D+
Sbjct: 135 NGLGGGALMAFHEM-HLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVF 193
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
++N+L+ YA C + + +F I +++VVSWN++ S +V+ F +A+ L+ EM +
Sbjct: 194 VANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSG 253
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+KP+E ++ +++AC RD G + ++ K G D
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWD 292
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 8/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H ++ + F D + A+ L A ++++FD+IP+ N+ +WN L Y
Sbjct: 177 KQVHGVVVVSGFEGDVFVANTLVVMYA--KCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
D ++ +F ++V S PNEF+L ++ A G+ IHG ++ D
Sbjct: 235 QIDFCGEAVGLFYEMVL-SGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP 293
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+N+L+ YA GDLA A VF I + D+VSWN++I+G V E+A+EL +M+
Sbjct: 294 FSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRS 353
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ P+ T+ L ACA E G + S + K ++ DL
Sbjct: 354 GICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDL 394
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 15/228 (6%)
Query: 37 KQLKR-IHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
K+L R +H+ ++ D D + + L ++ C L LE AR F+ +P+ +L WN
Sbjct: 375 KELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDL-----LEDARMAFNLLPEKDLIAWN 429
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+I YS E +++ +F+++ F N+ TL ++K+ A V + +HG+
Sbjct: 430 AIISGYSQYWEDMEALSLFVEMHKEGIGF-NQTTLSTILKSTAGLQVVHVCRQVHGLSVK 488
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F D+ + NSLI Y C + A +F D+VS+ SMI+ + + G E+A++L
Sbjct: 489 SGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKL 548
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ EM+ +KPD +L+ACA E G + HI K G +D+
Sbjct: 549 FLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDI 596
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 101/196 (51%), Gaps = 8/196 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H + + F D Y + L + S +E A ++F++ +L ++ ++I AY+
Sbjct: 480 RQVHGLSVKSGFHSDIYVVNSLID--SYGKCSHVEDAERIFEECTIGDLVSFTSMITAYA 537
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ ++ +FL++ + P+ F ++ A A F G+ +H F D+
Sbjct: 538 QYGQGEEALKLFLEM-QDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDI 596
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
NSL++ YA CG + A F + ++ +VSW++MI G + G +A++L+ +M E
Sbjct: 597 FAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKE 656
Query: 215 NVKPDEVTMVVVLSAC 230
V P+ +T+V VL AC
Sbjct: 657 GVSPNHITLVSVLGAC 672
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 8/204 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + + K IH ++ + +DP+SA+ L A L A +F++I QP++ +WN
Sbjct: 271 LRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYA--KVGDLADAISVFEKIKQPDIVSWN 328
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-- 150
+I + Q+ + Q+ S PN FTL +KA A +G+ +H
Sbjct: 329 AVIAGCVLHEHHEQALELLGQM-KRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMK 387
Query: 151 ---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
E DL +S L+ Y+ C L A F ++ +KD+++WN++ISG+ + +A+ L
Sbjct: 388 MDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSL 447
Query: 208 YREMEVENVKPDEVTMVVVLSACA 231
+ EM E + ++ T+ +L + A
Sbjct: 448 FVEMHKEGIGFNQTTLSTILKSTA 471
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 5/150 (3%)
Query: 111 FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA 165
L L+ + P + ++ R G IH DD I N LI+ Y+
Sbjct: 43 ILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYS 102
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
C + A + + D+VSW+++ISG+ + G A+ + EM + VK +E T
Sbjct: 103 KCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSS 162
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
VL AC+ +DL G V + +G + D+
Sbjct: 163 VLKACSIVKDLRIGKQVHGVVVVSGFEGDV 192
>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 113/215 (52%), Gaps = 14/215 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+HAQ + ++ P + L A +++ A K+F +I + ++ W+ +I Y+
Sbjct: 28 MHAQAIKRNYVKSPSVGTALLD--AYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQI 85
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ-FRVGQAIHG-----MFEDDLV 155
+ + IF+Q+ PNE+T +I A A P G+ +H F + L
Sbjct: 86 GDTEGAVRIFVQMA-KEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALC 144
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+S++L+ Y+ GD+ A+ VF ++D+VSWNS+ISG+ + G+ KA+E++ EM+ +N
Sbjct: 145 VSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQN 204
Query: 216 VKPDEVTMVVVLSAC-----AKKRDLEFGIWVSSH 245
++ D VT + V+SAC A + F I V H
Sbjct: 205 LEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDH 239
>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
Length = 917
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLI 95
K IH+Q+L F S + CA+ SLE AR++F+++P PN +WN ++
Sbjct: 224 KLIHSQVLEDGF------ESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIV 277
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
A + +++ F ++ P++ T ++ A + P G+ ++ +
Sbjct: 278 AACTQHGCCVEALWYFQRMQLQGGSTPDKVTFITILNACSSPATLTFGELLYECILQCGY 337
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ L++ N ++ Y+ CG + A F + ++D +SWN++ISG + GF ++A+ L+R
Sbjct: 338 DTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRR 397
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M E + PD+ T + ++ A+ ++ + +S + ++G+++D+
Sbjct: 398 MLAEGITPDKFTFISIIDGTARMQEAKI---LSELMVESGVELDV 439
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 13/172 (7%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAY---SSSDEPIQSFMIFLQLVYNSPYFPNE 124
S + ++ AR +FD + ++ W ++I +Y SSD+ + +L+ N+
Sbjct: 450 SRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGC----TRLMRLEGLMGND 505
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
FTL + A A G+ IH F + N+LI+ YA CG L A VF
Sbjct: 506 FTLVTALNACASLTALSEGKLIHSHAIERGFAASPAVGNALINMYAKCGCLEEADLVFHQ 565
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
GK ++VSWN++ + +V+ + +A++L++EM++E +K D+V+ V VL+ C+
Sbjct: 566 CGK-NLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCS 616
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 112/232 (48%), Gaps = 23/232 (9%)
Query: 20 LTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKM 79
+TV NG ++ + +IH +L T D ++ L S SL+ A ++
Sbjct: 609 VTVLNG-------CSSASEGSKIHNILLETGMESDHIVSTALLNMYTAS--KSLDEASRI 659
Query: 80 FDQIPQPNLYTWNTLIRA---YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA--A 134
F ++ ++ +WN +I + S E IQ F Q + P++ + V+ A
Sbjct: 660 FSRMEFRDIVSWNAMIAGKAEHGLSREAIQMF----QRMQLEGVAPDKISFVTVLNAFSG 715
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ P + + + + +E D ++ N+++ + G LA A F I ++D SWN
Sbjct: 716 SSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASWN 775
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+++ + G E+A++L+R M+ E+ +PD +T+V VLSAC+ +E G +
Sbjct: 776 VIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACSHGGLIEEGYY 827
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 14/222 (6%)
Query: 42 IHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+H+++ +++F D + ++ C +E A +F + P+ +WN+L+ A+
Sbjct: 24 VHSRVEASEFRRDDLVQNATIHMYGKCG-----CVEDAVTVFQSLDHPSQVSWNSLLAAF 78
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ + Q+F IF ++ P+ T V+ G+ +HG E +
Sbjct: 79 ARDGQFQQAFQIFQRMKLQG-LAPDRITFVTVLDGCTATGDLSRGKLLHGFVLEAGLERN 137
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+++ SLI Y CG + A VF + +DVVSW SMI +V+ +A+EL+ M
Sbjct: 138 VMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRP 197
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V P+ +T +SACA + G + S + ++G + D+
Sbjct: 198 SGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDV 239
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 98/203 (48%), Gaps = 12/203 (5%)
Query: 56 YSASKLFTPCALSTFSS---LEYARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFM 109
Y + C ++ +SS ++ A F + + + +WNT+I ++ + DE + F
Sbjct: 337 YDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFR 396
Query: 110 IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA--IHGMFEDDLVISNSLIHFYAVC 167
L P++FT +I AR + ++ + E D+ + ++LI+ ++
Sbjct: 397 RMLA----EGITPDKFTFISIIDGTARMQEAKILSELMVESGVELDVFLVSALINMHSRY 452
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G++ A +F + +D+V W S+IS +V+ G + A+ R M +E + ++ T+V L
Sbjct: 453 GNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTAL 512
Query: 228 SACAKKRDLEFGIWVSSHIEKNG 250
+ACA L G + SH + G
Sbjct: 513 NACASLTALSEGKLIHSHAIERG 535
>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
Length = 667
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTW-NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
CA SS A + Q+PQP ++ N+L+R+Y+ ++ VY++ +
Sbjct: 56 CACGRPSS---AHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALA-----VYSAMRAFD 107
Query: 124 EFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFV 178
T PF KA A R G+A+H F D + N+LI Y CGD+ A VF
Sbjct: 108 HLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFG 167
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+ + VVSWN++I+G V+ G+ E+A+E++ EM + V D T+V VL ACA+ +DL
Sbjct: 168 AMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNT 227
Query: 239 GIWVSSHIEKNGI 251
G V +E G+
Sbjct: 228 GRAVHRLVEDKGL 240
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 7/174 (4%)
Query: 72 SLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SLE AR++FD ++ +W +I AY +D ++ + Q++ + +PN T+ ++
Sbjct: 259 SLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYL 318
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A + + H + + D+ + +LI YA CG + + + + G
Sbjct: 319 LSACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMR-LTLERGSWRA 377
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+WN+ +SG+ G +KAIEL++ M E+V+PD TM +L A A+ DL+ G
Sbjct: 378 ETWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEG 431
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TWN + Y+ S ++ +F +++ S P+ T+ ++ A A + G+ IH
Sbjct: 379 TWNAALSGYTVSGREKKAIELFKRMIAES-VRPDSATMASILPAYAESADLKEGKNIHCF 437
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
F I+ LI Y+ GDL A+ +F + +KDVV+W ++I+G+ G A
Sbjct: 438 LLTLGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTA 497
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
I LY M KP+ VT+ +L AC+ ++ GI V
Sbjct: 498 ILLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKV 535
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 82/203 (40%), Gaps = 31/203 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+ K IH +L+ F A+ L S L+ A +F +P+ ++ W T+I
Sbjct: 429 KEGKNIHCFLLTLGFLRSTEIATGLID--VYSKAGDLDAAWALFQWLPEKDVVAWTTIIA 486
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
YS + +++ ++V S PN T+ ++ A + GM ++ + +
Sbjct: 487 GYSIHGHARTAILLYDRMV-ESGGKPNTVTIATLLYACSHA----------GMIDEGIKV 535
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+ + + + + C+ M+G+ G E+A L ++M E
Sbjct: 536 FKDMRNVHGLMPNGEHYSCLVDMLGR---------------AGRIEEAHRLIQDMPFE-- 578
Query: 217 KPDEVTMVVVLSACAKKRDLEFG 239
P +L AC +++EFG
Sbjct: 579 -PSTSVWGALLGACVLHKNVEFG 600
>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 952
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 104/191 (54%), Gaps = 6/191 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A +E AR++FD + ++ TWN+L Y + P Q +F ++ N N
Sbjct: 84 AYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK-ANPL 142
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ ++ + + G+ IHG +D+ +S++ ++FYA C + A VF ++
Sbjct: 143 TVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLM 202
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+DVV+WNS+ S +V GF +K + ++REM ++ VKPD VT+ +LSAC+ +DL+ G
Sbjct: 203 PHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGK 262
Query: 241 WVSSHIEKNGI 251
+ K+G+
Sbjct: 263 AIHGFALKHGM 273
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 119/231 (51%), Gaps = 14/231 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + K K IH ++ D + +S + C + A+ +FD +P ++
Sbjct: 154 LQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCL-----CVREAQTVFDLMPHRDVV 208
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TWN+L Y + P + +F ++V + P+ T+ ++ A + + G+AIHG
Sbjct: 209 TWNSLSSCYVNCGFPQKGLNVFREMVLDGVK-PDPVTVSCILSACSDLQDLKSGKAIHGF 267
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+++ +SN+L++ Y C + A VF ++ ++V++WNS+ S +V GF +K
Sbjct: 268 ALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKG 327
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ ++REM + VKPD + M +L AC++ +DL+ G + K+G+ D+
Sbjct: 328 LNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDV 378
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 102/185 (55%), Gaps = 6/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+ +FD +P N+ TWN+L Y + P + +F ++ N P+ + ++ A +
Sbjct: 296 AQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVK-PDPMAMSSILPACS 354
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ + G+ IHG +D+ + +L++ YA C + A VF ++ ++VV+WNS
Sbjct: 355 QLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNS 414
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ S +V GF +K + ++REM + VKPD VTM+ +L AC+ +DL+ G + ++G
Sbjct: 415 LSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHG 474
Query: 251 IKMDL 255
+ D+
Sbjct: 475 MVEDV 479
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 8/229 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + K K IH + D + + L + + A+ +FD +P N+ TWN
Sbjct: 356 LKDLKSGKTIHGFAVKHGMVEDVFVCTALVN--LYANCLCVREAQTVFDLMPHRNVVTWN 413
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+L Y + P + +F ++V N P+ T+ ++ A + + G+ IHG
Sbjct: 414 SLSSCYVNCGFPQKGLNVFREMVLNGVK-PDLVTMLSILHACSDLQDLKSGKVIHGFAVR 472
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+D+ + N+L+ YA C + A VF +I ++V SWN +++ + +EK + +
Sbjct: 473 HGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYM 532
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ +M + VK DE+T VV+ C K +E + + ++ G K D T
Sbjct: 533 FSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDET 581
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 118/256 (46%), Gaps = 41/256 (16%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + K K IH + D + + L + A + A+ +FD IP + +WN
Sbjct: 457 LQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCV--CVREAQVVFDLIPHREVASWN 514
Query: 93 TLIRAYSSSDEPIQSFMIFLQL-------------------VYNS--------------- 118
++ AY ++ E + +F Q+ V NS
Sbjct: 515 GILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTM 574
Query: 119 PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----FED-DLVISNSLIHFYAVCGDLAMA 173
+ P+E T+ +++A + R+G+ IH ++D DL +N+L+ YA CG L+++
Sbjct: 575 GFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLS 634
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
VF M+ KDV SWN+MI G ++A+ L+ +M + VKPD T VLSAC+
Sbjct: 635 RNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHS 694
Query: 234 RDLEFGIWVSSHIEKN 249
+E G+ + + + ++
Sbjct: 695 MLVEEGVQIFNSMSRD 710
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 60/103 (58%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ I N+ IH Y C + A VF + +DVV+WNS+ + +V GF ++ + ++R+M
Sbjct: 74 DVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMG 133
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ VK + +T+ +L C+ +DL+ G + + ++G+ D+
Sbjct: 134 LNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDV 176
>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 703
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 16/227 (7%)
Query: 40 KRIHAQML-----STDFFFDPY-SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K IHAQ++ S D S L++ C S + ARK+FD++ Q N+ +W+
Sbjct: 43 KTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQS-----KCARKLFDRMLQRNVVSWSA 97
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFED 152
L+ Y E ++ +F LV +PNE+ V+ A + + G+ HG + +
Sbjct: 98 LMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKS 157
Query: 153 DLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
L+ + N+LIH Y+ C + A + + DV S+NS++S VE G +A ++
Sbjct: 158 GLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVL 217
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ M E V D VT V VL CA+ RDL+ G+ + + + K G+ D+
Sbjct: 218 KRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDV 264
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 8/195 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IHAQ+L T FD + +S L + ARK FD + N+ W ++ AY
Sbjct: 250 QIHAQLLKTGLVFDVFVSSTLIDT--YGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQ 307
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLV 155
+ ++ +F ++ PNEFT ++ A A V G +HG F++ L+
Sbjct: 308 NGHFEETLNLFTKMELEDTR-PNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLI 366
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ N+LI+ Y+ G++ +Y VF + +DV++WN+MI G+ G ++A+ ++++M
Sbjct: 367 VGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAG 426
Query: 216 VKPDEVTMVVVLSAC 230
P+ VT + VLSAC
Sbjct: 427 ECPNYVTFIGVLSAC 441
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 112/224 (50%), Gaps = 8/224 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+ K+ H +L + Y + L S ++ A ++ D +P +++++N+++
Sbjct: 145 KEGKQCHGYLLKSGLLLHQYVKNALIH--MYSRCFHVDSAMQILDTVPGDDVFSYNSILS 202
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED---- 152
A S ++ + ++V + + T V+ A+ ++G IH
Sbjct: 203 ALVESGCRGEAAQVLKRMV-DECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLV 261
Query: 153 -DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ +S++LI Y CG++ A F + ++VV+W ++++ +++ G FE+ + L+ +M
Sbjct: 262 FDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKM 321
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E+E+ +P+E T V+L+ACA L +G + I +G K L
Sbjct: 322 ELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHL 365
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 102/200 (51%), Gaps = 8/200 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K LK++H + + +P KL A L RK+FD++ N+ +N +IR
Sbjct: 35 KTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGL--TRKVFDEMSDRNVVFYNVMIR 92
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFE 151
+Y ++ ++F ++V N + P+ +T P V+KA + R G IHG +
Sbjct: 93 SYVNNHRYDDGLLVFREMV-NGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLD 151
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+L + N LI Y CG L A VF + KDVVSWNSM++G+ F+ A+E+ REM
Sbjct: 152 FNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREM 211
Query: 212 EVENVKPDEVTMVVVLSACA 231
E KPD TM ++ A A
Sbjct: 212 EDYGQKPDGCTMASLMPAVA 231
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 6/191 (3%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D + + L A ++ ++ Y K+F + + NL +WN +IR Y + P Q+ ++LQ
Sbjct: 219 DGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQ 278
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCG 168
+ P+ T V+ A +G+ IH E +L++ NSLI YA CG
Sbjct: 279 M-EKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCG 337
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
L A VF + +DV SW S+IS + G A+ L+ EM PD + V +LS
Sbjct: 338 CLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILS 397
Query: 229 ACAKKRDLEFG 239
AC+ L+ G
Sbjct: 398 ACSHSGLLDEG 408
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 31/217 (14%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH +L F+ + + L L AR++FD++ ++ +WN+++ Y+ +
Sbjct: 141 IHGDVLKVGLDFNLFVGNGLIA--MYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHN 198
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLI 161
+ I ++ + P+ T+ ++ A A E+ L +
Sbjct: 199 MRFDDALEICREM-EDYGQKPDGCTMASLMPAVANTSS-----------ENVLYVEK--- 243
Query: 162 HFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV 221
+FV + +K+++SWN MI +++ +A++LY +ME V+PD +
Sbjct: 244 --------------IFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAI 289
Query: 222 TMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
T VL AC L G + ++EK + +L E
Sbjct: 290 TFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLE 326
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
L+ YA CG+ + VF + ++VV +N MI +V ++ + ++REM +PD
Sbjct: 59 LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
T VL AC+ +L +G+ + + K G+ +L
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNL 154
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/176 (18%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ A+++FD++ ++ +W +LI AY + + + +F +++ NS P+ +
Sbjct: 337 GCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEML-NSGQAPDSIAFVAI 395
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ A + G+ DD I+ + H+ C+ ++G+
Sbjct: 396 LSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYA----------CLVDLLGR-------- 437
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G ++A + ++M +E P+E +LS+C +++ GI + ++
Sbjct: 438 -------AGRVDEAYNIIKQMPIE---PNERVWATLLSSCRVFTNMDIGILAADNL 483
>gi|302783925|ref|XP_002973735.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
gi|300158773|gb|EFJ25395.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
Length = 836
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 8/191 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE ARK+F+++ + ++ +W+T+I AY+ S ++ I+ + + PN T VI
Sbjct: 270 LEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIG 329
Query: 133 AAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A G +HG E D+ + ++L+ Y CG L A F + K+DV+
Sbjct: 330 ACTGCGDVIRGIQVHGRLVSLGLETDVAVGSALVQMYVKCGSLEDAKKAFDRVEKRDVLC 389
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN M+S + E G ++ IE Y M+VE P+ VT VL AC+ DL G V S I
Sbjct: 390 WNFMLSAYSERGSPQQVIEAYEAMDVE---PNAVTYTNVLIACSAMEDLAQGQKVHSRIV 446
Query: 248 KNGIKMDLTFE 258
+G++ D+T E
Sbjct: 447 SSGLETDMTME 457
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 103/223 (46%), Gaps = 17/223 (7%)
Query: 41 RIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++H +++S D S L + C SLE A+K FD++ + ++ WN ++ A
Sbjct: 342 QVHGRLVSLGLETDVAVGSALVQMYVKCG-----SLEDAKKAFDRVEKRDVLCWNFMLSA 396
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS P Q + + PN T V+ A + GQ +H E
Sbjct: 397 YSERGSPQQVIEAYEAM----DVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLET 452
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + +L+ Y C L A VF +GKKDV+ WN M+ G+++ +A+ LY M
Sbjct: 453 DMTMETALLSLYIKCRSLKSACQVFEAMGKKDVIPWNFMMVGYIDHDCDTEALRLYARMH 512
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
V+ + VT L AC+K +D+E G V + I G + D+
Sbjct: 513 EAGVEANNVTFANALKACSKIKDIETGSKVEAMITTKGFETDV 555
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 14/231 (6%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
QK RI + L TD + S L+ C SL+ A ++F+ + + ++ WN +
Sbjct: 438 GQKVHSRIVSSGLETDMTMETALLS-LYIKC-----RSLKSACQVFEAMGKKDVIPWNFM 491
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
+ Y D ++ ++ ++ + + N T +KA ++ G + M
Sbjct: 492 MVGYIDHDCDTEALRLYARM-HEAGVEANNVTFANALKACSKIKDIETGSKVEAMITTKG 550
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
FE D+V +L++ YA CGDL A VF ++DVV W +MI+ + + G E+A+ L
Sbjct: 551 FETDVVTDTALLNMYAACGDLEAAKRVFGSRRGERRDVVFWTAMIASYAQAGRGEEALAL 610
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
Y+ M E +KP+ VT VLSAC+ ++ G + S +E ++D+ +
Sbjct: 611 YKTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKIHSKLEGKAEELDVAVQ 661
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 11/210 (5%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFD--QIPQPNLYTWNTLIRAY 98
++ A + + F D + + L A LE A+++F + + ++ W +I +Y
Sbjct: 541 KVEAMITTKGFETDVVTDTALLNMYA--ACGDLEAAKRVFGSRRGERRDVVFWTAMIASY 598
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----D 153
+ + ++ ++ + + + PN T V+ A + G+ IH E D
Sbjct: 599 AQAGRGEEALALY-KTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKIHSKLEGKAEELD 657
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + NSL+ YA CG L A+ F I +DV SW M++ F G +A+EL REME+
Sbjct: 658 VAVQNSLLSMYARCGSLRDAWSCFAKIHNRDVFSWTGMVAAFAHHGHSARALELVREMEL 717
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
V PD VT VL AC+ + LE G W S
Sbjct: 718 CGVSPDAVTFQSVLHACSHEGSLERG-WAS 746
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 15/223 (6%)
Query: 40 KRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K++HA + +++F +D S ++ C S A+ +FD + + ++ TWN +
Sbjct: 144 KKVHAYISASEFKWDISLQTSLVNMYAKCG-----SPADAKAVFDSMARKDIVTWNAMAG 198
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA--IHGMFEDDL 154
A S QS + ++ PN T + + ++ R + + + +
Sbjct: 199 A---SVHNGQSHKLLREMDLQGVK-PNATTYASITRGSSTLTGCRAMEQRLLASGYMSHV 254
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+L++ YA CGDL A VF + +KDV+SW++MIS + + G +AIE+YR ME E
Sbjct: 255 PVQNALVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMESE 314
Query: 215 -NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+V+P+ VT V V+ AC D+ GI V + G++ D+
Sbjct: 315 TSVEPNAVTFVGVIGACTGCGDVIRGIQVHGRLVSLGLETDVA 357
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 9/158 (5%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F + + +R++FD + Q N+Y+W+ +I AY+ + ++F++F + + + PN T
Sbjct: 71 FGNTQKSREVFDGMQQKNVYSWSMMIGAYAQNGHRNEAFLLF-ERMESEGIRPNAVTCLH 129
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A + + G+ +H F+ D+ + SL++ YA CG A A VF + +KD
Sbjct: 130 VLGACSYQNELPFGKKVHAYISASEFKWDISLQTSLVNMYAKCGSPADAKAVFDSMARKD 189
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
+V+WN+M V G K L REM+++ VKP+ T
Sbjct: 190 IVTWNAMAGASVHNGQSHK---LLREMDLQGVKPNATT 224
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D++ N LI + G+ + VF + +K+V SW+ MI + + G +A L+ M
Sbjct: 56 DNVYFRNWLIQLHGKFGNTQKSREVFDGMQQKNVYSWSMMIGAYAQNGHRNEAFLLFERM 115
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
E E ++P+ VT + VL AC+ + +L FG V ++I + K D++ +
Sbjct: 116 ESEGIRPNAVTCLHVLGACSYQNELPFGKKVHAYISASEFKWDISLQ 162
>gi|449498539|ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 8/225 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+ +I AQ++ + P A C L A F IP+P+++ N+LIRA
Sbjct: 27 HIPQIQAQLILQNLHSHPLIAHHFINTC--HHLHLLGSAFLFFTHIPKPHVFICNSLIRA 84
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFED 152
+S S P ++ + NS PN +T PFV+K+ A GQ++H
Sbjct: 85 FSHSKIPHTPLFLYTHMNRNS-ISPNNYTFPFVLKSLADFKDLVGGQSVHTHVVKSGHAS 143
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
DL + N+L+ YA CG + + VF + DVVSW +I G+ + A+ ++ +M+
Sbjct: 144 DLYVQNTLMDVYASCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVSFMLDDALIVFEQMQ 203
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
V P+ VT+V L+ACA +E G+W+ ++ ++D+
Sbjct: 204 YAGVDPNRVTIVNALAACASFGAIEMGVWIHEFVKTKRWEVDVVL 248
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +H ++ + D Y + L ++ + +K+FD++ ++ +W LI Y
Sbjct: 130 QSVHTHVVKSGHASDLYVQNTLMD--VYASCGKMGLCKKVFDEMLHTDVVSWTILIMGYR 187
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
S + ++F Q+ Y + PN T+ + A A +G IH +E D+
Sbjct: 188 VSFMLDDALIVFEQMQY-AGVDPNRVTIVNALAACASFGAIEMGVWIHEFVKTKRWEVDV 246
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ +LI Y CG + A VF + +K+V +WN I+G E+AI ++ M+ E
Sbjct: 247 VLGTALIDMYGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASAKCGEEAIAWFKRMDEE 306
Query: 215 NVKPDEVTMVVVLSACA 231
V+ D+VT+V VLSAC+
Sbjct: 307 GVEADDVTLVAVLSACS 323
>gi|449436789|ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 8/225 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+ +I AQ++ + P A C L A F IP+P+++ N+LIRA
Sbjct: 27 HIPQIQAQLILQNLHSHPLIAHHFINTC--HHLHLLGSAFLFFTHIPKPHVFICNSLIRA 84
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFED 152
+S S P ++ + NS PN +T PFV+K+ A GQ++H
Sbjct: 85 FSHSKIPHTPLFLYTHMNRNS-ISPNNYTFPFVLKSLADFKDLVGGQSVHTHVVKSGHAS 143
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
DL + N+L+ YA CG + + VF + DVVSW +I G+ + A+ ++ +M+
Sbjct: 144 DLYVQNTLMDVYASCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVSFMLDDALIVFEQMQ 203
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
V P+ VT+V L+ACA +E G+W+ ++ ++D+
Sbjct: 204 YAGVDPNRVTIVNALAACASFGAIEMGVWIHEFVKTKRWEVDVVL 248
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +H ++ + D Y + L ++ + +K+FD++ ++ +W LI Y
Sbjct: 130 QSVHTHVVKSGHASDLYVQNTLMD--VYASCGKMGLCKKVFDEMLHTDVVSWTILIMGYR 187
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
S + ++F Q+ Y + PN T+ + A A +G IH +E D+
Sbjct: 188 VSFMLDDALIVFEQMQY-AGVDPNRVTIVNALAACASFGAIEMGVWIHEFVKTKRWEVDV 246
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ +LI Y CG + A VF + +K+V +WN I+G E+AI ++ M+ E
Sbjct: 247 VLGTALIDMYGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASAKCGEEAIAWFKRMDEE 306
Query: 215 NVKPDEVTMVVVLSACA 231
V+ D+VT+V VLSAC+
Sbjct: 307 GVEADDVTLVAVLSACS 323
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 7/194 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F S+ A++MF + + +WN +I A+S S + + IF ++ + PN T
Sbjct: 153 ARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMK--PNSTTY 210
Query: 128 PFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
VI + P G+ IH F+ DLV++ +LI+ Y CG A VF + K
Sbjct: 211 INVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKK 270
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+D+VSWN MI +V+ G F +A+ELY+++++E K + T V +L AC+ + L G V
Sbjct: 271 RDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLV 330
Query: 243 SSHIEKNGIKMDLT 256
SHI + G+ ++
Sbjct: 331 HSHILERGLDSEVA 344
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 93/169 (55%), Gaps = 5/169 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD++ + WN +I Y + + + IF ++ + P+ T V++A A
Sbjct: 396 ARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACA 455
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ +A+H E ++V++N+LI+ YA CG L A +F +K VVSW +
Sbjct: 456 SLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTA 515
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
M++ F + G + +A++L++EM++E VKPD+VT +L C LE G
Sbjct: 516 MVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQG 564
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 108/235 (45%), Gaps = 49/235 (20%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++IHA++++ F D A+ L + C S AR++FD++ + ++ +WN +I
Sbjct: 227 RKIHAEIVANGFDSDLVVATALINMYGKCGSS-----HEAREVFDKMKKRDMVSWNVMIG 281
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + + ++ ++ +L + + T ++ A + G+ +H +
Sbjct: 282 CYVQNGDFHEALELYQKLDMEG-FKRTKATFVSILGACSSVKALAQGRLVHSHILERGLD 340
Query: 152 DDLVISNSLIHFYAVCGDL--------------AMAYC--------------------VF 177
++ ++ +L++ YA CG L A+A+ VF
Sbjct: 341 SEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVF 400
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME-VENVKPDEVTMVVVLSACA 231
+G +D + WN+MI+ +V+ G A++++REM +KPD VT + VL ACA
Sbjct: 401 DRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACA 455
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ T V+ + + G+A+H FE D ++ N+LI Y C L A V
Sbjct: 5 PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64
Query: 177 FVMIG--KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F + +++VVSWN+MI+ + + G +A+ LY M ++ + D VT V VL AC+
Sbjct: 65 FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 14/223 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP--QPNLYTWNTLIRA 97
+ +H ++ + F D + L + SL AR +F+ + Q N+ +WN +I A
Sbjct: 27 RALHERIRCSRFERDTMVGNALIS--MYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAA 84
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDL-- 154
Y+ + ++ +++ ++ + T V+ A + Q G+ IH +F L
Sbjct: 85 YAQNGHSTEALVLYWRMNLQG-LGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDS 140
Query: 155 --VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++N+L+ YA G + A +F + +D SWN++I + G + A+ +++EM+
Sbjct: 141 FQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK 200
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++KP+ T + V+S + L G + + I NG DL
Sbjct: 201 C-DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDL 242
>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
Length = 781
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD++P N TW LI Y+ + P + + ++++ + PN F I+A
Sbjct: 54 ARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEG-FLPNRFAFGSAIRACQ 112
Query: 136 RPVQFR-VGQAIHG------MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ +R G+ +HG + + + + N LI+ YA CGD+ A VF ++ KD VSW
Sbjct: 113 ESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSW 172
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
NSMI+G + FE A++ Y M + P ++ LS+CA + G K
Sbjct: 173 NSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIK 232
Query: 249 NGIKMDLT 256
G+ MD++
Sbjct: 233 LGLDMDVS 240
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 9/205 (4%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP-NLYTW 91
L+ K +IHA +L + D + L S +E ++F ++ + + +W
Sbjct: 319 LSTSKLSHQIHALILKYNVKDDNAIENALLACYGKS--GEMENCEEIFSRMSERRDEVSW 376
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
N++I Y +E + M + L+ + FT V+ A A G +H
Sbjct: 377 NSMISGYIH-NELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAI 435
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
E D+VI ++L+ Y+ CG + A F ++ +++ SWNSMISG+ G + A+
Sbjct: 436 RACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALR 495
Query: 207 LYREMEVENVKPDEVTMVVVLSACA 231
L+ M++ PD +T V VLSAC+
Sbjct: 496 LFTRMKLSGQLPDHITFVGVLSACS 520
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI-QSFMIFLQLVYNSPYFPNEFTLPF 129
S L +K+F + + + +WNT+I A + S + ++ +FL+++ + + PN T
Sbjct: 253 SRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMM-RAGWSPNRVTFIN 311
Query: 130 VIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFV-MIGKK 183
++ + ++ IH + +DD I N+L+ Y G++ +F M ++
Sbjct: 312 LLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERR 371
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
D VSWNSMISG++ KA++L M + D T VLSACA LE G+ V
Sbjct: 372 DEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEV 430
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTL 127
+++AR +F + + +WN++I + ++ ++S+ + + P+ F L
Sbjct: 152 GDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSY----NSMRKTGLMPSNFAL 207
Query: 128 PFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ + A +GQ HG + D+ +SN+L+ YA LA VF + +
Sbjct: 208 ISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLE 267
Query: 183 KDVVSWNSMISGFVE-GGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
+D VSWN++I + G +AIE++ EM P+ VT + +L+
Sbjct: 268 RDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLA 314
>gi|168032055|ref|XP_001768535.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680248|gb|EDQ66686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 19/237 (8%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFF---FDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
R + + + K +HA M +DF F + ++ C SL AR++FD++
Sbjct: 57 RRCTHMKDLAEGKYVHAHMAKSDFVPTTFVLNALVNMYMKCG-----SLVDARQVFDRMV 111
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIKAAARPVQFRVG 143
+ +++T+ ++ Y+ P ++ ++ Q+ P + T ++ + G
Sbjct: 112 ERDMFTYTMMLTGYAKLGYPEDAYKMYEQM--QKERVPVDRITFTTILNVCSTLRSLEKG 169
Query: 144 QAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
+H G D+++ N+LI YA CG+L A+ VF + +D+V+WN M+ G
Sbjct: 170 MKVHQDMVRGGIRPDIILGNTLIDMYAKCGNLKQAHRVFKEMDNRDIVTWNIMVGGAARN 229
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
G+F++A E ++ M E KPD+VT + +L+AC LE G + S I K G ++D+
Sbjct: 230 GYFDEAFEFFKAMLDEGQKPDKVTYISILNACTS---LEQGTLLHSVIMKAGFELDV 283
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 116/226 (51%), Gaps = 14/226 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYT 90
T+ +Q +H+ ++ F D + L F+ C S+ A K+F ++PQ N+ +
Sbjct: 262 TSLEQGTLLHSVIMKAGFELDVRVGTALVNMFSKCG-----SVVDALKVFQKLPQRNVVS 316
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
W ++I AY+ + EP ++ + +++ N ++ ++ A G+A+HG
Sbjct: 317 WTSVISAYAQAGEPERALECYAKML-NEGMVADKRAYTTILNVCAMLGDIEKGKAVHGHI 375
Query: 151 -----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
D++ N LI Y CG L AY +F + +DVVSW ++I G+V+ +++A+
Sbjct: 376 VQSGIATDIITENGLIDMYVKCGRLKDAYRLFQDMNVRDVVSWTTLIEGWVQHRQYQEAL 435
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ + +M++E V P+ VT + VL ACA L G + + I + G+
Sbjct: 436 DTFNDMQLEGVMPNTVTFLGVLKACAGMGSLVDGKRIHARIVEAGL 481
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 100/193 (51%), Gaps = 9/193 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+L+ A ++F ++ ++ TWN ++ + + ++F F + + + P++ T +
Sbjct: 199 GNLKQAHRVFKEMDNRDIVTWNIMVGGAARNGYFDEAFE-FFKAMLDEGQKPDKVTYISI 257
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A Q G +H + FE D+ + +L++ ++ CG + A VF + +++V
Sbjct: 258 LNACTSLEQ---GTLLHSVIMKAGFELDVRVGTALVNMFSKCGSVVDALKVFQKLPQRNV 314
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VSW S+IS + + G E+A+E Y +M E + D+ +L+ CA D+E G V H
Sbjct: 315 VSWTSVISAYAQAGEPERALECYAKMLNEGMVADKRAYTTILNVCAMLGDIEKGKAVHGH 374
Query: 246 IEKNGIKMDLTFE 258
I ++GI D+ E
Sbjct: 375 IVQSGIATDIITE 387
>gi|242034867|ref|XP_002464828.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
gi|241918682|gb|EER91826.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
Length = 447
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +FD++ ++ +W T+I AY ++ +F ++V + + PNEFT+ +KA A
Sbjct: 65 ASTVFDRMASRDVVSWTTMITAYVQHGHGDKALQMFPKMV-SEGFRPNEFTVCSALKACA 123
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R G+ +HG +++ D+ + ++L+ YA CG++ A VF + +++ ++W S
Sbjct: 124 EEKALRFGKQLHGAIVKRLYKYDIHVGSALVTMYARCGEVFDAQAVFDKMPRRNTITWTS 183
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG+ + G E+A+ L+R+M++ V + +T+V +LSAC + + G + + I KN
Sbjct: 184 MISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTVVGLLSACGSMQSIYLGKELHAQIIKNC 243
Query: 251 IKMDL 255
++ +L
Sbjct: 244 MEQNL 248
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGMFE----DDLVISNSLIHFYAVCGDLAMAYCVFV 178
N T ++K+ ++GQ +H ++++ +++ HFYA CGD+A A VF
Sbjct: 11 NSLTFVCLLKSCGERCDAKLGQQVHCCVVKGGWSNVIVDSAVAHFYAQCGDVAAASTVFD 70
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+ +DVVSW +MI+ +V+ G +KA++++ +M E +P+E T+ L ACA+++ L F
Sbjct: 71 RMASRDVVSWTTMITAYVQHGHGDKALQMFPKMVSEGFRPNEFTVCSALKACAEEKALRF 130
Query: 239 GIWVSSHIEKNGIKMDL 255
G + I K K D+
Sbjct: 131 GKQLHGAIVKRLYKYDI 147
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 8/205 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H ++ + +D + S L T + + A+ +FD++P+ N TW ++I Y+
Sbjct: 132 KQLHGAIVKRLYKYDIHVGSALVTM--YARCGEVFDAQAVFDKMPRRNTITWTSMISGYA 189
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDL 154
S ++ ++F ++ F N T+ ++ A +G+ +H E +L
Sbjct: 190 QSGCGEEAVLLFRKMKMR-RVFVNHLTVVGLLSACGSMQSIYLGKELHAQIIKNCMEQNL 248
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L+ FY+ CG+ A + + +D V+W +MISG+ G +A++ EM +
Sbjct: 249 QIGSTLVWFYSRCGEHTYAARILEAMPDRDAVAWTAMISGYNNLGHNVEALKSLDEMLWD 308
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
V P+ T L ACA+ L G
Sbjct: 309 GVAPNTYTYSSALKACARLEALRDG 333
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 14/200 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +HAQ++ + S L ++ C T YA ++ + +P + W +I
Sbjct: 233 KELHAQIIKNCMEQNLQIGSTLVWFYSRCGEHT-----YAARILEAMPDRDAVAWTAMIS 287
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
Y++ +++ +++++ PN +T +KA AR R G+ IHG+
Sbjct: 288 GYNNLGHNVEALKSLDEMLWDGVA-PNTYTYSSALKACARLEALRDGRRIHGVVNKTQAF 346
Query: 157 SN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
SN SLI Y CG + A VF + + ++V+W MI+GF + E+A++ M
Sbjct: 347 SNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMITGFTQNCLCEEALKYMYLM 406
Query: 212 EVENVKPDEVTMVVVLSACA 231
+ + D+ + VLS+C
Sbjct: 407 QQDGYDVDDFVLSTVLSSCG 426
>gi|302805448|ref|XP_002984475.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
gi|300147863|gb|EFJ14525.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
Length = 592
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 107/203 (52%), Gaps = 16/203 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+R+HA+++ + D + + +++ C LE AR +FD +P N ++W +I
Sbjct: 32 RRVHARIIHSGHTRDRFLGNLLVQMYRDCG-----RLEDARAVFDSMPLRNEFSWAIIIS 86
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
AY + + ++ ++ LV +S P+ F + A AR G IH
Sbjct: 87 AYVGAGKEQEALCLYRALVRSSTEIQPDAFIFSSALAACARLKCLEQGLEIHEQIVKRGI 146
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV--SWNSMISGFVEGGFFEKAIELY 208
+ D+ + N+L+ YA CG + A VF I +DVV SWN+MI+GF + G ++A+EL+
Sbjct: 147 KQDVGLQNALVTMYAKCGRIDRAKQVFDRITHRDVVVISWNAMIAGFGQNGRPKQALELF 206
Query: 209 REMEVENVKPDEVTMVVVLSACA 231
R M++E ++P +T VL ACA
Sbjct: 207 RRMDLEGLQPSRMTYCSVLDACA 229
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 101/196 (51%), Gaps = 9/196 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY--TWNTLIRAYS 99
IH Q++ D + L T + ++ A+++FD+I ++ +WN +I +
Sbjct: 137 IHEQIVKRGIKQDVGLQNALVT--MYAKCGRIDRAKQVFDRITHRDVVVISWNAMIAGFG 194
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-HGMFE---DDLV 155
+ P Q+ +F ++ P+ T V+ A A +G+ I GM E D+
Sbjct: 195 QNGRPKQALELFRRMDLEGLQ-PSRMTYCSVLDACANLTASSLGRIICDGMDEALAKDIS 253
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
++NS+ + Y CG +A F+ + +DVVSW ++I+ + + G+ +A++++R M
Sbjct: 254 VANSICNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYAQNGYSSEALDIFRIMVQAG 313
Query: 216 VKPDEVTMVVVLSACA 231
V+P+ +T++ LSAC+
Sbjct: 314 VEPNGITLINTLSACS 329
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 135 ARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
R V R+ IH D + N L+ Y CG L A VF + ++ SW +IS
Sbjct: 31 GRRVHARI---IHSGHTRDRFLGNLLVQMYRDCGRLEDARAVFDSMPLRNEFSWAIIISA 87
Query: 195 FVEGGFFEKAIELYREM--EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+V G ++A+ LYR + ++PD L+ACA+ + LE G+ + I K GIK
Sbjct: 88 YVGAGKEQEALCLYRALVRSSTEIQPDAFIFSSALAACARLKCLEQGLEIHEQIVKRGIK 147
Query: 253 MDLTFE 258
D+ +
Sbjct: 148 QDVGLQ 153
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 81/193 (41%), Gaps = 38/193 (19%)
Query: 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
S ++ C L E AR+ F ++ ++ +W +I AY+ + ++ IF +++
Sbjct: 257 SICNMYGKCGLP-----ELARQTFLEMTYRDVVSWTAIIAAYAQNGYSSEALDIF-RIMV 310
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDLVISNSLI--HFYAVCGDLAMA 173
+ PN TL + A + HG +F++ I +SL+ +Y V + +
Sbjct: 311 QAGVEPNGITLINTLSACS-----------HGALFDEGSDIFSSLVSGDYYGVTANESHF 359
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
C ++G+ G+ + A L +M K V +LSAC
Sbjct: 360 LCAIDLLGR---------------AGYLKDAETLITKMPF---KAGAVAWTSLLSACRTF 401
Query: 234 RDLEFGIWVSSHI 246
RDL+ V++H+
Sbjct: 402 RDLKRAGRVANHL 414
>gi|242045336|ref|XP_002460539.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
gi|241923916|gb|EER97060.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
Length = 630
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 5/175 (2%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+E A +F +P+ N+ +W +I + + ++ ++F++++ + P++FT
Sbjct: 284 LGCVEKATSLFGSVPETNVISWTAMIGGLARNGLADEALILFVEMLAHEHIHPDDFTFGA 343
Query: 130 VIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A A G+ +H F L ++NSLI YA CGDL VF I KD
Sbjct: 344 VLHACATAASLASGRMVHCRVFQSGFVSYLYVANSLIDMYAKCGDLEGGTNVFSTIVNKD 403
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+VSWN+M+ GF G +A+ +Y M+ +V PDEVT +L+AC+ LE G
Sbjct: 404 LVSWNTMLFGFAINGLPNEALVVYDSMKSHDVCPDEVTFTGLLTACSHSGLLEHG 458
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L A+++FD++P N WNTL+ YS S ++F ++ + ++ TL ++
Sbjct: 155 LRLAQELFDEMPNRNNVAWNTLLMGYSRSGNANHCLLLFNKMRM-AGLTCDDATLCILVD 213
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A G AIH + + +SNSLI Y L A +F + + +VS
Sbjct: 214 ACTELANPSAGSAIHKIVVQSGWNAMAEVSNSLISLYTKFSLLDDAVRIFESMEVQTIVS 273
Query: 188 WNS-------------------------------MISGFVEGGFFEKAIELYREMEV-EN 215
WNS MI G G ++A+ L+ EM E+
Sbjct: 274 WNSLIDAYMKLGCVEKATSLFGSVPETNVISWTAMIGGLARNGLADEALILFVEMLAHEH 333
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ PD+ T VL ACA L G V + ++G
Sbjct: 334 IHPDDFTFGAVLHACATAASLASGRMVHCRVFQSG 368
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 41/193 (21%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FD +P+ + WN ++ AY+ + +P + +F + +P P+ F+L + AAA
Sbjct: 30 ARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFSR----APA-PDAFSLTAALSAAA 84
Query: 136 RPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCG---------------------- 168
G +H L + NSLI YA C
Sbjct: 85 ALRSPTAGAQLHARLLRVGLRALLPVGNSLISMYAKCARAEDAARAFGEMRERNALSWCS 144
Query: 169 ---------DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
DL +A +F + ++ V+WN+++ G+ G + L+ +M + + D
Sbjct: 145 LLDAYVASDDLRLAQELFDEMPNRNNVAWNTLLMGYSRSGNANHCLLLFNKMRMAGLTCD 204
Query: 220 EVTMVVVLSACAK 232
+ T+ +++ AC +
Sbjct: 205 DATLCILVDACTE 217
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
LV + S I GD A A VF + ++D V+WN+M++ + G A+ L+
Sbjct: 11 LVAATSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALF 65
>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
Length = 583
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S + LE A K F I + +L +WNT I + S ++ ++ F +++ P+EFT
Sbjct: 248 SKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTF 307
Query: 128 PFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A + G+ IHG D+ N+LI+ YA CG +A AY +F +
Sbjct: 308 ASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEH 367
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
+++VSWN+MI+GF GF KA EL+ +M+ VKPD VT V +L+A
Sbjct: 368 QNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTA 414
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 9/172 (5%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L AR++FD++ + NL +W+ +I Y EPI + +F +L PNE+ VI
Sbjct: 54 LREARQVFDEMSERNLVSWSAMISGYEQIGEPISALGLFSKL----NIVPNEYVYASVIS 109
Query: 133 AAARPVQFRVGQAIHGM---FEDDLV--ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G+ IHG F D V +SN+LI Y CG + A + + + V+
Sbjct: 110 ACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVA 169
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+N++I+GFVE +K E+ R M + PD T V +L C + DL+ G
Sbjct: 170 YNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRG 221
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 15/227 (6%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFT---PCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
Q K+IH Q L + ++ L T C + + L Y ++ + N +N L
Sbjct: 119 QGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAY-----NEALELNPVAYNAL 173
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
I + + +P + F + L+++Y +FP+ FT ++ + G+ +H
Sbjct: 174 ITGFVENQQPDKGFEV-LRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLK 232
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
I N +I Y+ L A F I +KD++SWN+ IS EKA+E ++
Sbjct: 233 LNSTAFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFK 292
Query: 210 EMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EM E V+PDE T L+AC+ + G + H+ + + D+
Sbjct: 293 EMLNECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDV 339
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 130 VIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+I ++ R G +H + D+++SN +++ YA C L A VF + +++
Sbjct: 9 LIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERN 68
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+VSW++MISG+ + G A+ L+ ++ N+ P+E V+SACA + L G +
Sbjct: 69 LVSWSAMISGYEQIGEPISALGLFSKL---NIVPNEYVYASVISACASLKGLVQGKQIHG 125
Query: 245 HIEKNGI 251
K G+
Sbjct: 126 QALKFGL 132
>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
Length = 795
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 121/248 (48%), Gaps = 15/248 (6%)
Query: 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFF-FDPYSASKLFTPCALSTFSS 72
PNP T G L ++ K IH+++ T D + L T A S
Sbjct: 118 QPNPVVYTTVLGACASIKAL---EEGKAIHSRISGTKGLKLDVILENSLLTMYA--KCGS 172
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE A+++F+++ ++ +WN +I AY+ S F ++L + P+ T V+
Sbjct: 173 LEDAKRLFERMSGRSVSSWNAMIAAYAQSGH----FEEAIRLYEDMDVEPSVRTFTSVLS 228
Query: 133 AAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + G+ IH + E DL + N+L+ YA C L A +F + ++DVVS
Sbjct: 229 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS 288
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W++MI+ F E F++AIE Y +M++E V+P+ T VL ACA DL G V I
Sbjct: 289 WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL 348
Query: 248 KNGIKMDL 255
NG K+ L
Sbjct: 349 GNGYKITL 356
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 13/199 (6%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A S+ AR FD I + N Y+W +++ AY+ + + L L PN
Sbjct: 67 AYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGH----YRAALDLYKRMDLQPNPV 122
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED------DLVISNSLIHFYAVCGDLAMAYCVFVM 179
V+ A A G+AIH D+++ NSL+ YA CG L A +F
Sbjct: 123 VYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFER 182
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ + V SWN+MI+ + + G FE+AI LY +M+VE P T VLSAC+ L+ G
Sbjct: 183 MSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE---PSVRTFTSVLSACSNLGLLDQG 239
Query: 240 IWVSSHIEKNGIKMDLTFE 258
+ + I G ++DL+ +
Sbjct: 240 RKIHALISSRGTELDLSLQ 258
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 7/197 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +H Q+L + + + L +++ SL+ AR +FDQI + W LI YS
Sbjct: 341 RAVHDQILGNGYKITLVNGTALVD--LYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYS 398
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DDL 154
++ ++ + + VI A A F + H E D
Sbjct: 399 KQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDF 458
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V++ SL++ Y+ G+L A VF + +D ++W ++I+G+ + G A+ LY+EME+E
Sbjct: 459 VLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELE 518
Query: 215 NVKPDEVTMVVVLSACA 231
+P E+T +VVL AC+
Sbjct: 519 GAEPSELTFMVVLYACS 535
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 146 IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
I G ++ + N ++ Y CG +A A F I +K+ SW SM++ + + G + A+
Sbjct: 50 ISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAAL 109
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK-NGIKMDLTFE 258
+LY+ M+++ P+ V VL ACA + LE G + S I G+K+D+ E
Sbjct: 110 DLYKRMDLQ---PNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILE 160
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 16/226 (7%)
Query: 37 KQLKRIHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K+ + IH +++ F F + L+ C ++ A KMF+++ +L +W T
Sbjct: 162 KKGREIHGLIITNGFESNLFVMTAVMSLYAKC-----RQIDNAYKMFERMQHKDLVSWTT 216
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
L+ Y+ + ++ + LQ+ + P+ TL ++ A A R+G++IHG
Sbjct: 217 LVAGYAQNGHAKRALQLVLQM-QEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRS 275
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
FE + ++N+L+ Y CG +A VF + K VVSWN+MI G + G E+A +
Sbjct: 276 GFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATF 335
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+M E P VTM+ VL ACA DLE G +V ++K +K+D
Sbjct: 336 LKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDK--LKLD 379
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 99/178 (55%), Gaps = 7/178 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A +F+ + + N+ TWN +I Y+ + ++ +F ++ + + FTL
Sbjct: 393 SKCKRVDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFC-MMQSQGIKLDCFTL 450
Query: 128 PFVIKAAA-----RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
VI A A R ++ G A+ ++++ +S +L+ YA CG + A +F M+ +
Sbjct: 451 VGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQE 510
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ V++WN+MI G+ G ++ ++L+ EM+ VKP+++T + V+SAC+ +E G+
Sbjct: 511 RHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGL 568
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 29/169 (17%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+++ ARK+FD + + ++ TWN +I Y + ++ +F ++ PN+ T V
Sbjct: 496 GAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEM-QKGAVKPNDITFLSV 554
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
I A + G + ++D + ++ H+ A
Sbjct: 555 ISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSA------------------------- 589
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
M+ G + A +EM +KP + +L AC +++E G
Sbjct: 590 MVDLLGRAGQLDDAWNFIQEMP---IKPGISVLGAMLGACKIHKNVELG 635
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++HA++ F+P A+KL + +SL A +FD+I + NL+ WN +IR Y+
Sbjct: 21 KQLHARICQVGISFNPLLATKLVNLYCIC--NSLTNAHLLFDRISKRNLFLWNVMIRGYA 78
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
+ + ++ Q+ + P++FT PFV+KA + G+ IH E D+
Sbjct: 79 WNGPYELAISLYYQM-RDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDV 137
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +LI YA CG + A VF I ++DVV WNSM++ + + G ++++ L R M
Sbjct: 138 FVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFN 197
Query: 215 NVKPDEVTMVVVLSACA 231
+KP E T V+ ++A A
Sbjct: 198 GLKPTEGTFVISIAASA 214
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 111/207 (53%), Gaps = 15/207 (7%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L+ ++ K+IH ++ + D + + L + C +E AR++FD+I + ++
Sbjct: 115 LSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCG-----CVESARQVFDKIDERDVV 169
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
WN+++ YS + +P +S + + +N P E T I A+A G+ +HG
Sbjct: 170 CWNSMLATYSQNGQPDESLALCRVMAFNG-LKPTEGTFVISIAASADNGLLPQGKELHGY 228
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
FE + + +L+ YA G + +A +F ++ +K VVSWN+MI+G+ G +A
Sbjct: 229 SWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEA 288
Query: 205 IELYREMEVENVKPDEVTMVVVLSACA 231
++L++EM+ V PD +T V VL+AC+
Sbjct: 289 LDLFKEMK-GKVLPDHITFVGVLAACS 314
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%)
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+++ L++ Y +C L A+ +F I K+++ WN MI G+ G +E AI LY +M
Sbjct: 37 LLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDY 96
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ PD+ T VL AC+ +E G + + ++G++ D+
Sbjct: 97 GLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDV 137
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 103/187 (55%), Gaps = 7/187 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
+R +FD++ NL+ WN L+ Y ++ ++ FL+L+ + + P+ FT P +IKA
Sbjct: 162 SRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACT 221
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+++HGM DL + N++I Y CG L A +F + +++++SWNS
Sbjct: 222 GKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNS 281
Query: 191 MISGFVEGGFFEKAIELYREM--EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+I GF E GF+ +A +R + + + PD TMV +L C+ + +++ G+ + K
Sbjct: 282 LIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK 341
Query: 249 NGIKMDL 255
G+ +L
Sbjct: 342 LGLVHEL 348
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 10/205 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +H + D + + + F L+ A ++FD++P+ NL +WN+LIR +S
Sbjct: 230 KSVHGMAVKMGLIMDLFVGNAMIALYGKCGF--LDEAVELFDKMPEQNLISWNSLIRGFS 287
Query: 100 SSDEPIQSFMIFLQLVYNSP-YFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ ++++ F L+ + P+ T+ ++ + VG IHGM +
Sbjct: 288 ENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHE 347
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE--M 211
L++ N+LI Y+ CG L+ A +F I K VVSWNSMI + GF + +L R+ M
Sbjct: 348 LMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWM 407
Query: 212 EVENVKPDEVTMVVVLSACAKKRDL 236
E E ++ +EVT++ +L AC ++ +L
Sbjct: 408 EEELMEVNEVTILNLLPACLEESEL 432
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 6/193 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFT 126
S L A +F +I ++ +WN++I AYS ++F + ++ NE T
Sbjct: 359 SKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVT 418
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ ++ A + +A+HG F+ +I+N+ I YA CG L A VF +
Sbjct: 419 ILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMN 478
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
K V SWN++I G + G KA++ Y EM + PD+ ++V +L AC + L++G
Sbjct: 479 TKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKE 538
Query: 242 VSSHIEKNGIKMD 254
+ + +NG++M+
Sbjct: 539 IHGFVLRNGLEMN 551
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
Y R F+ + N WN ++ YS ++ P ++ +F Q++ + P+E + ++ A
Sbjct: 570 YGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLE-PDEIAIASILGAC 628
Query: 135 ARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
++ +G+ +H + ED+ V + SL+ YA G L + +F + K+V SW
Sbjct: 629 SQLSALGLGKEVHCFALKNSLMEDNFV-ACSLMDMYAKSGFLGHSQRIFNRLNGKEVASW 687
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
N MI+GF G KA+EL+ +M+ + +PD T + VL AC
Sbjct: 688 NVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACC 730
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + SL +A +F + ++ +WN +I ++ + +PI++ + ++ P++F
Sbjct: 460 AYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMT-RLGILPDDF 518
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
++ ++ A R + G+ IHG E + ++ SL+ Y C F +
Sbjct: 519 SIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETM 578
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
G K+ V WN+M+SG+ + +A+ L+R+M + ++PDE+ + +L AC++ L G
Sbjct: 579 GDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGK 638
Query: 241 WVSSHIEKNGIKMD 254
V KN + D
Sbjct: 639 EVHCFALKNSLMED 652
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 145 AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ F D V++ LI Y++CG + VF + K++ WN+++SG+V +++A
Sbjct: 134 CVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEA 193
Query: 205 IELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
I + E+ V +PD T ++ AC K D+ G V K G+ MDL
Sbjct: 194 IHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDL 245
>gi|357484133|ref|XP_003612353.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513688|gb|AES95311.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 26/231 (11%)
Query: 8 VISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL 67
++S+ + NP LT Q +IHAQ++ T + + A+ L +
Sbjct: 52 LLSLAKKSNPIILT----------------QCNQIHAQLIITQYISQTHLANTLLS--FY 93
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S S+ YA K+FD++P N+ TW TLI ++ ++F +F + S PNE T
Sbjct: 94 SKSSNFHYAHKLFDKMPNRNVVTWTTLISSHLKYGSVSKAFEMFNHMRV-SDERPNENTF 152
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGD-LAMAYCVFVMIG 181
+++A + VG IHG+ E + +SL++ Y GD L A VF +
Sbjct: 153 AVLLRACTNRELWSVGLQIHGLLVRCGLEREKFAGSSLVYMYLKGGDDLRDALRVFYGLL 212
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACA 231
++DVV+WN MISGF + G F L+ EM E + +KPD +T +L C+
Sbjct: 213 ERDVVAWNVMISGFAQNGDFRMVQRLFSEMWEEQGLKPDRITFASLLKCCS 263
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 9/219 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IH ++ + ++ S L L L A ++F + + ++ WN +I ++
Sbjct: 170 QIHGLLVRCGLEREKFAGSSLVYM-YLKGGDDLRDALRVFYGLLERDVVAWNVMISGFAQ 228
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLV 155
+ + +F ++ P+ T ++K + V V Q IHG+ E D+V
Sbjct: 229 NGDFRMVQRLFSEMWEEQGLKPDRITFASLLKCCS--VLNEVMQ-IHGIVYKFGAEVDVV 285
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ ++++ YA C D++ +F + KKD W+SMISG+ E+A+ +++M +
Sbjct: 286 VESAMVDLYAKCRDVSSCRKIFDSMEKKDNFVWSSMISGYTMNNRGEEAVNFFKDMCRQR 345
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
VK D+ + L AC + DL G+ V + KNG + D
Sbjct: 346 VKLDQHVLSSTLKACVEIEDLNTGVQVHGLMIKNGHQND 384
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 8/198 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H M+ D + AS L A +F L K+F +I ++ WN++I A +
Sbjct: 371 QVHGLMIKNGHQNDCFVASVLLNLYA--SFGELGDVEKLFSRIDDKDIVAWNSMILAQAR 428
Query: 101 SDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----L 154
+ M Q + + + TL V+K+ + G+ IH +
Sbjct: 429 PGQGCGRCMQLFQELRRTTFLQIQGATLVAVLKSCEKDSDLPAGRQIHSLIVKSSLCRHT 488
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ N+L+H Y+ C + A+ FV I +KD SW+S+I + KA+EL +EM E
Sbjct: 489 LVGNALVHMYSECKQIDDAFKAFVDIVRKDDSSWSSIIGTCKQNRMESKALELCKEMLDE 548
Query: 215 NVKPDEVTMVVVLSACAK 232
+ ++ + +SAC++
Sbjct: 549 GINFTSYSLPLCISACSQ 566
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 88/169 (52%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A K F I + + +W+++I + ++ + +++ F + ++L
Sbjct: 499 SECKQIDDAFKAFVDIVRKDDSSWSSIIGTCKQNRMESKALELCKEMLDEGINFTS-YSL 557
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
P I A ++ + G+ +H + D+ I +S+I YA CG++ + VF K
Sbjct: 558 PLCISACSQLLTISEGKQLHVFAIKSGYSCDVYIGSSIIDMYAKCGNIEESEKVFDEQLK 617
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ V++N++ISG+ G ++AIE+ ++E V P+ VT + ++SAC+
Sbjct: 618 PNEVTFNAIISGYAHHGKAQQAIEVLSKLEKNGVAPNHVTFLALMSACS 666
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 56/99 (56%)
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
++N+L+ FY+ + A+ +F + ++VV+W ++IS ++ G KA E++ M V +
Sbjct: 85 LANTLLSFYSKSSNFHYAHKLFDKMPNRNVVTWTTLISSHLKYGSVSKAFEMFNHMRVSD 144
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+P+E T V+L AC + G+ + + + G++ +
Sbjct: 145 ERPNENTFAVLLRACTNRELWSVGLQIHGLLVRCGLERE 183
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 8/216 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +HA ++ DF D + L T + AR +FD++P + +WN +I Y
Sbjct: 155 REVHAHVVRFDFDMDVDVVNALIT--MYVKCGDVVSARMLFDKMPTRDRISWNAMISGYF 212
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDL 154
+DE ++ +F ++ S P+ T+ VI A R+G +H ++ ++
Sbjct: 213 ENDECLEGLELFFRMRELS-IDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNI 271
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ NSLI Y G A VF + +DVVSW ++ISG V+ +KA+E Y+ ME+
Sbjct: 272 SVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEIT 331
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
PDEVT+ VLSACA L+ G+ + E+ G
Sbjct: 332 GTMPDEVTIASVLSACASLGQLDMGMKLHELAERTG 367
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 98/182 (53%), Gaps = 6/182 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F + A +F ++ + +L++WN L+ Y+ + ++ ++ ++++ + P+ +T P
Sbjct: 82 FGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILW-AGIRPDVYTFPS 140
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+++ A + G+ +H F+ D+ + N+LI Y CGD+ A +F + +D
Sbjct: 141 VLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRD 200
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+SWN+MISG+ E + +EL+ M ++ PD +TM V+SAC D G + S
Sbjct: 201 RISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHS 260
Query: 245 HI 246
++
Sbjct: 261 YV 262
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 10/171 (5%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +E A ++F QIP ++ +W ++I ++ ++ + F +++ S PN TL
Sbjct: 383 SKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKSK--PNSVTL 440
Query: 128 PFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ A AR G+ IH GM D + N+++ Y CG + A F +
Sbjct: 441 ISALSACARVGALMCGKEIHAHALKAGMGFDGF-LPNAILDLYVRCGRMRTALNQF-NLN 498
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
+KDV +WN +++G+ + G +EL++ M + PD+VT + +L AC++
Sbjct: 499 EKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSR 549
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 7/184 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F + ++ +W T+I + P ++ + + P+E T+ V+ A A
Sbjct: 290 AESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGT-MPDEVTIASVLSACA 348
Query: 136 RPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
Q +G +H + E +V++NSLI Y+ C + A +F I KDV+SW S
Sbjct: 349 SLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTS 408
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+I+G +A+ +R+M +++ KP+ VT++ LSACA+ L G + +H K G
Sbjct: 409 VINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKAG 467
Query: 251 IKMD 254
+ D
Sbjct: 468 MGFD 471
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 108 FMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAV 166
F+ ++L N Y E+ V+ + + R+G A+ MF + F
Sbjct: 36 FVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRLGNALLSMF----------VRF--- 82
Query: 167 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
GD+ A+ VF +G++D+ SWN ++ G+ + GFF++A+ LY + ++PD T V
Sbjct: 83 -GDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSV 141
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
L +CA DL G V +H+ + MD+
Sbjct: 142 LRSCAGAMDLVRGREVHAHVVRFDFDMDV 170
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 17/226 (7%)
Query: 38 QLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
++K+IH + TD + D + S +++ C + +S K+FD +P ++ +W L
Sbjct: 202 EVKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGAS-----KVFDFMPVRDVVSWTGL 256
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-- 152
I Y + + +FL++ PN T ++ A + +G+ IHG+
Sbjct: 257 ISGYMKAGLFNDAVALFLRM----DVAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYP 312
Query: 153 ---DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+LV+SN+L+ Y C + A +F I +KD+VSW SMISG V+ +++++L+
Sbjct: 313 HGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFY 372
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EM +PD V + VLSACA L++G WV +I+ + IK D+
Sbjct: 373 EMLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDV 418
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 19/222 (8%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQP-NLYTW 91
+ K+IHAQ+L + + +K A + F + + Y Q + +
Sbjct: 98 RSFKQIHAQLLRSTLVDNDLVVTK-----AANFFGKHVTDIRYPCNFLKQFDWSFSSFPC 152
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
N +I Y + + P + I+ +V N + P+ +T+P V+K+ AR + IH +
Sbjct: 153 NLIISGYGAGNFPWAAIRIYRWVVGNG-FVPDVYTVPAVLKSCARFSGIAEVKQIHTLAV 211
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
D+ + NS +H Y++CGD A VF + +DVVSW +ISG+++ G F A+
Sbjct: 212 KTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVA 271
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
L+ M+ V P+ T V +L AC K L G + + K
Sbjct: 272 LFLRMD---VAPNAATFVSILGACGKLGCLNLGKGIHGLVSK 310
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 86/165 (52%), Gaps = 6/165 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
S+ A+++FD+IP+ ++ +W ++I P +S +F +++ S + P+ L V+
Sbjct: 332 SVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEML-GSGFEPDGVILTSVL 390
Query: 132 KAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A A G+ +H + D+ I SLI YA CG + MA +F ++ K++
Sbjct: 391 SACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIR 450
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+WN+ I G G ++A++ + + +P+E+T + V SAC
Sbjct: 451 TWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACC 495
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 6/187 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A ++FD++ ++ +WN++I Y S+ + I+ Q++Y + T+ V+
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV-DLATIISVLVG 260
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A +G+A+H + FE + SN+L+ Y+ CGDL A VF +G+++VVSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
SMI+G+ G+ + AI L ++ME E VK D V + +L ACA+ L+ G V +I+
Sbjct: 321 TSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380
Query: 249 NGIKMDL 255
N + +L
Sbjct: 381 NNMASNL 387
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 21/232 (9%)
Query: 45 QMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ----PNLYTWNTLIRAYSS 100
QM D + + + CA S SL+ + + D I NL+ N L+ Y+
Sbjct: 342 QMEKEGVKLDVVAITSILHACARS--GSLDNGKDVHDYIKANNMASNLFVCNALMDMYAK 399
Query: 101 SDEPIQSFMIFLQLVYN---------SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+ +F +V P+ T+ ++ A A G+ IHG
Sbjct: 400 CGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYIL 459
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+ D ++N+L+ Y CG L +A +F MI KD+VSW MI+G+ G+ +AI
Sbjct: 460 RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIA 519
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ EM ++PDEV+ + +L AC+ LE G W +I KN ++ E
Sbjct: 520 TFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-WRFFYIMKNDFNIEPKLE 570
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVF-VMIGK-------------------KDVVSW 188
M + ++ + N ++ YA GD + C+F +M+ K +DV+SW
Sbjct: 160 MEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISW 219
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
NSMISG+V G E+ + +Y++M + D T++ VL CA L G V S K
Sbjct: 220 NSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279
Query: 249 NGIKMDLTF 257
+ + + F
Sbjct: 280 SSFERRINF 288
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 103/187 (55%), Gaps = 6/187 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A ++FD++ ++ +WN++I Y S+ + I+ Q++Y + T+ V+
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDV-DLATIISVLVG 260
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A +G+A+H + FE + SN+L+ Y+ CGDL A VF +G+++VVSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
SMI+G+ G + AI L ++ME E VK D V +L ACA+ L+ G V +I+
Sbjct: 321 TSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKA 380
Query: 249 NGIKMDL 255
N ++ +L
Sbjct: 381 NNMESNL 387
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 106/236 (44%), Gaps = 21/236 (8%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP----QPNLYTWNTLIR 96
R+ QM D + + + CA S SL+ + + D I + NL+ N L+
Sbjct: 338 RLLQQMEKEGVKLDVVATTSILHACARS--GSLDNGKDVHDYIKANNMESNLFVCNALMD 395
Query: 97 AYSSSDEPIQSFMIFLQLVYN---------SPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
Y+ + +F +V P+ T+ ++ A A G+ IH
Sbjct: 396 MYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIH 455
Query: 148 GM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
G + D ++N+L+ Y CG L +A +F MI KD+VSW MISG+ G+
Sbjct: 456 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGN 515
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+AI + EM ++PDEV+ + +L AC+ LE G W +I KN ++ E
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-WRFFYIMKNDFNIEPKLE 570
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 108/271 (39%), Gaps = 48/271 (17%)
Query: 16 NPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL-----FTPCALSTF 70
+P TL N R +F ++Q IH + S FF P +S L TP
Sbjct: 11 SPLTLNQN----RKENFFSSQNGC-FIH-KPTSKATFFSPIFSSCLPIRISATPTRTIDR 64
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+Y K+ NL L+ S+ +++ LQL S + + +
Sbjct: 65 QVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTYSSVLQLCAGSKSLTDGKKVHSI 124
Query: 131 IKAAARPVQFRVGQAIHGMF-----------------EDDLVISNSLIHFYAVCGDLAMA 173
IK+ V +G + ++ + ++ + N ++ YA GD +
Sbjct: 125 IKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKES 184
Query: 174 YCVF-VMIGK-------------------KDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
C+F +M+ K +DV+SWNSMISG+V G E+ +E+Y++M
Sbjct: 185 ICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMY 244
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+ D T++ VL CA L G V S
Sbjct: 245 LGIDVDLATIISVLVGCANSGTLSLGKAVHS 275
>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 102/182 (56%), Gaps = 6/182 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE A+ +FD++P+ N+ TW T++ Y S + + IF ++ PN+ T +
Sbjct: 269 LERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEG-IRPNQVTFLGAVD 327
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + GQ +H M F+ D I ++L++ YA CG++ +A VF + +KDV+S
Sbjct: 328 ACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVIS 387
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN MI+ + G +AI LY +M+ + KP++VT V +LSAC+ ++ G+ + ++
Sbjct: 388 WNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMV 447
Query: 248 KN 249
K+
Sbjct: 448 KD 449
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 94/198 (47%), Gaps = 12/198 (6%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
AL +++ ARK+FD++P+ N+ W T++ + S ++ +F P
Sbjct: 168 AALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALF-------DGMPER 220
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+ + + R+ +A H +F D+ N +I + DL A +F +
Sbjct: 221 NVVSWNAMISGYARNHRIDEA-HDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKM 279
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+++V++W +M++G+++ E A++++ M VE ++P++VT + + AC+ L G
Sbjct: 280 PRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQ 339
Query: 241 WVSSHIEKNGIKMDLTFE 258
V I K + D E
Sbjct: 340 QVHQMICKTSFQFDTFIE 357
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP-YFPNEF 125
L+ + AR++FD+ P ++ +W L+ AY+ Q + + +++ P N
Sbjct: 45 LAAAGRVSDARRLFDRTPDRDVVSWTALVAAYAR-----QGMLHDARALFDRPDARRNVV 99
Query: 126 TLPFVIKAAARPVQFRVGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
T ++ AR + +A+ M E ++V N+++ Y G + A+ +F + +D
Sbjct: 100 TWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRD 159
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
SWN +++ V G +KA +L+ M NV
Sbjct: 160 AGSWNILLAALVRSGNMDKARKLFDRMPERNV 191
>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 113/209 (54%), Gaps = 16/209 (7%)
Query: 41 RIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
RIH+ + D D + L + C L + A K+F ++P+ +L +WN LI
Sbjct: 81 RIHSCIRGLDLINDVRVGTALVDFYCKCGL-----VAEASKVFVEMPERDLVSWNALISG 135
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG------MFE 151
Y ++ ++F+++ + PN T+ ++ A ++ R+GQ IHG +F+
Sbjct: 136 YVGCLCYKEAVLLFVEM-KKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFD 194
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + +L+ FY D +++ VF ++ +++VSWN++I+GF+ G KA++LY M
Sbjct: 195 MDAYVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSM 253
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+E +K D VTM+VV+ ACA+ L G+
Sbjct: 254 LIEGIKFDAVTMLVVIQACAEYGCLRLGM 282
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 9/163 (5%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A MF + PQ +L +WN+LI +Y +D ++ ++F ++ S PN T+ ++ +
Sbjct: 519 ATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMI--SELEPNSVTIINILTSCT 576
Query: 136 RPVQFRVGQAIHGM-------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ +GQ +H E D ++N+ I YA CG L A +F + + +VSW
Sbjct: 577 QLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSW 636
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
N+MI+G+ G A + +M + KP+ V+ VLSAC+
Sbjct: 637 NAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACS 679
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 91/168 (54%), Gaps = 10/168 (5%)
Query: 91 WNTLIRAYSS--SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
WN++I+ ++ +D I S ++ + P+ T+P V+KA R G IH
Sbjct: 28 WNSIIKHHTKLKNDHAILSTYTQMESL---GITPDSATMPLVLKACGRLNAIGNGVRIHS 84
Query: 149 MFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
+D+ + +L+ FY CG +A A VFV + ++D+VSWN++ISG+V +++
Sbjct: 85 CIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKE 144
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
A+ L+ EM+ + P+ T+V +L AC + +L G + + +NG+
Sbjct: 145 AVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGL 192
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
+ ++F + N+ +WN +I + + + ++ ++ ++ F + T+ VI+A A
Sbjct: 215 SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKF-DAVTMLVVIQACA 273
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R+G +H + +DL I N+L++ Y+ G L ++ +F + D WNS
Sbjct: 274 EYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNS 333
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE-FGIWVSSHIEKN 249
MIS ++ GF +AI L+ +M +E +K D T+ ++LS C D +G + +H K+
Sbjct: 334 MISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKS 393
Query: 250 GIKMD 254
GI++D
Sbjct: 394 GIELD 398
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 112/221 (50%), Gaps = 9/221 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +HA + + D Y + L + + + A+ +F+++ ++ +WNT+I A++
Sbjct: 384 RGLHAHAMKSGIELDAYLGNALLS--MYVKHNQITAAQYVFEKMRGLDVISWNTMISAFA 441
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S ++F +FL + + F N +T+ ++ G++IHG E +
Sbjct: 442 QSMFRAKAFELFLMMCESEIKF-NSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINT 500
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ SL Y CGD A +F ++D+VSWNS+IS +++ KA+ L+ M +
Sbjct: 501 SLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHM-IS 559
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++P+ VT++ +L++C + L G + ++ + + +++
Sbjct: 560 ELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEM 600
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+YA K+F + ++ +WN +I Y + + F Q++ + + PN + V+
Sbjct: 618 LQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQML-DDGFKPNNVSFASVLS 676
Query: 133 AAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
A + G+ L + +S++ + + L C+ ++G+
Sbjct: 677 ACSHS----------GLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGR---------- 716
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
GG F +AI M +E PD +LS+C K +
Sbjct: 717 -----GGHFSEAIAFINSMPIE---PDASIWRALLSSCQIKSN 751
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 14/207 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L +Q K+IHA ++ F +D + S ++ C ++ ARK+F+QIP P+
Sbjct: 513 LVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCG-----EMKSARKVFNQIPSPDDV 567
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
W T+I + E Q+ + Q+ + P+E+T ++KA + G+ IH
Sbjct: 568 AWTTVISGCVENGEEEQALFTYHQMRL-AGVQPDEYTFATLVKACSLLTALEQGKQIHAN 626
Query: 150 FED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
D + SL+ YA CG++ AY +F + + V WN+MI G + G E+A
Sbjct: 627 IMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEA 686
Query: 205 IELYREMEVENVKPDEVTMVVVLSACA 231
+ + EM+ V PD VT + VLSAC+
Sbjct: 687 LNFFNEMKSRGVTPDRVTFIGVLSACS 713
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 12/224 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H L D + ++ L S +E A +F +L +WN ++ ++
Sbjct: 419 RQVHTCALKAGIVLDSFVSTALID--VYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFT 476
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
SD ++ +F L++ ++ T KAA V+ + G+ IH + F DL
Sbjct: 477 VSDNYREALRLF-SLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDL 535
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ + ++ Y CG++ A VF I D V+W ++ISG VE G E+A+ Y +M +
Sbjct: 536 FVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLA 595
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
V+PDE T ++ AC+ LE G I N +K++ F+
Sbjct: 596 GVQPDEYTFATLVKACSLLTALEQG----KQIHANIMKLNCAFD 635
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 9/159 (5%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
S+ YAR+MF Q+ + +L +WNT+I + S S +F+ L+ S P++FT+ V
Sbjct: 346 GSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLL-RSGLLPDQFTITSV 404
Query: 131 IKAAARPVQ-FRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
++A + + + VG+ +H G+ D V S +LI Y+ G + A +F
Sbjct: 405 LRACSSLEESYCVGRQVHTCALKAGIVLDSFV-STALIDVYSKGGKMEEAELLFHNQDGF 463
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
D+ SWN+M+ GF + +A+ L+ M K D++T
Sbjct: 464 DLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQIT 502
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 26/218 (11%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN--LYTWNTLIRA 97
KR HA ++++ D Y + L T A SL ARK+FD PQ + L T+N ++ A
Sbjct: 33 KRTHAVIVTSGLNPDRYVTNNLITMYA--KCGSLFSARKLFDITPQSDRDLVTYNAILAA 90
Query: 98 YSSSDE------PIQSFMIFLQLVYNSPYFPNEFTLPFVIK--------AAARPVQFRVG 143
Y+ + E ++F IF +L+ S TL + K +A+ +Q G
Sbjct: 91 YAHTGELHDVEKTHEAFHIF-RLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQ---G 146
Query: 144 QAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
A+ + D+ ++ +L++ YA + A +F + +DVV WN M+ +VE G ++
Sbjct: 147 YAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDE 206
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKK----RDLE 237
+ L+ ++PD V++ +L KK R+LE
Sbjct: 207 VLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELE 244
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 7/186 (3%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
YA K+F ++ WN + +Y + E ++ F ++ S + T ++
Sbjct: 249 YATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMI-KSRVPCDSLTYIVILSVV 307
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
A +G+ IHG ++ + ++NS I+ Y G + A +F + + D++SWN
Sbjct: 308 ASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWN 367
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK-KRDLEFGIWVSSHIEK 248
++ISG G E ++ L+ ++ + PD+ T+ VL AC+ + G V + K
Sbjct: 368 TVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALK 427
Query: 249 NGIKMD 254
GI +D
Sbjct: 428 AGIVLD 433
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 29/186 (15%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAY---SSSDEPIQSFMIFLQLVYNSPYFPNE 124
+ F + AR +FD++P ++ WN +++AY + DE + F F + S P+
Sbjct: 168 AKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAF----HRSGLRPDC 223
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
++ R + VG+ +FE +L + YA +FV D
Sbjct: 224 VSV--------RTILMGVGKKT--VFEREL----EQVRAYATK--------LFVCDDDSD 261
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
V WN +S +++ G +A++ +R+M V D +T +V+LS A LE G +
Sbjct: 262 VTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHG 321
Query: 245 HIEKNG 250
+ + G
Sbjct: 322 AVVRFG 327
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 103/187 (55%), Gaps = 7/187 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
+R +FD++ NL+ WN L+ Y ++ ++ FL+L+ + + P+ FT P +IKA
Sbjct: 162 SRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACT 221
Query: 136 RPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+++HGM DL + N++I Y CG L A +F + +++++SWNS
Sbjct: 222 GKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNS 281
Query: 191 MISGFVEGGFFEKAIELYREM--EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+I GF E GF+ +A +R + + + PD TMV +L C+ + +++ G+ + K
Sbjct: 282 LIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK 341
Query: 249 NGIKMDL 255
G+ +L
Sbjct: 342 LGLVHEL 348
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 10/205 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +H + D + + + F L+ A ++FD++P+ NL +WN+LIR +S
Sbjct: 230 KSVHGMAVKMGLIMDLFVGNAMIALYGKCGF--LDEAVELFDKMPEQNLISWNSLIRGFS 287
Query: 100 SSDEPIQSFMIFLQLVYNSP-YFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
+ ++++ F L+ + P+ T+ ++ + VG IHGM +
Sbjct: 288 ENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHE 347
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE--M 211
L++ N+LI Y+ CG L+ A +F I K VVSWNSMI + GF + +L R+ M
Sbjct: 348 LMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWM 407
Query: 212 EVENVKPDEVTMVVVLSACAKKRDL 236
E E ++ +EVT++ +L AC ++ +L
Sbjct: 408 EEELMEVNEVTILNLLPACLEESEL 432
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
Y R F+++ N WN ++ YS ++ P ++ +F Q++ + P+E + ++ A
Sbjct: 570 YGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLE-PDEIAIASILGAC 628
Query: 135 ARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
++ +G+ +H + ED+ V + SL+ YA G L + +F + K+V SW
Sbjct: 629 SQLSALGLGKEVHCFALKNSLMEDNFV-ACSLMDMYAKSGFLGHSQRIFNRLNGKEVASW 687
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
N MI+GF G KA+EL+ +M+ + +PD T + VL AC
Sbjct: 688 NVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACC 730
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 6/193 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFT 126
S L A +F +I ++ +WN++I AYS ++F + ++ NE T
Sbjct: 359 SKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVT 418
Query: 127 LPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ ++ A + +A+HG F+ +I+N+ I YA CG L A VF +
Sbjct: 419 ILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMN 478
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
K V SWN++I G + G KA++ Y EM + PD+ ++V +L AC + L++G
Sbjct: 479 TKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKE 538
Query: 242 VSSHIEKNGIKMD 254
+ + +NG++M+
Sbjct: 539 IHGFVLRNGLEMN 551
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + SL +A +F + ++ +WN +I ++ + +PI++ + ++ P++F
Sbjct: 460 AYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMT-RLGILPDDF 518
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
++ ++ A R + G+ IHG E + ++ SL+ Y C F +
Sbjct: 519 SIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERM 578
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
G K+ V WN+M+SG+ + +A+ L+R+M + ++PDE+ + +L AC++ L G
Sbjct: 579 GDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGK 638
Query: 241 WVSSHIEKNGIKMD 254
V KN + D
Sbjct: 639 EVHCFALKNSLMED 652
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 145 AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ F D V++ LI Y++CG + VF + K++ WN+++SG+V +++A
Sbjct: 134 CVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEA 193
Query: 205 IELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
I + E+ V +PD T ++ AC K D+ G V K G+ MDL
Sbjct: 194 IHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDL 245
>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 104/183 (56%), Gaps = 6/183 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
+LE A+++FD++P+ N+ TW T++ Y S + + +F ++ + PN+ T +
Sbjct: 268 NLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDG-IRPNQVTFLGAV 326
Query: 132 KAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A + GQ +H M F+ D I ++L++ YA CG++ +A VF + +KDV+
Sbjct: 327 DACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVI 386
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
SWN MI+ + G +AI LY +M+ KP++VT V +LSAC+ ++ G+ + ++
Sbjct: 387 SWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYM 446
Query: 247 EKN 249
K+
Sbjct: 447 VKD 449
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 31/197 (15%)
Query: 51 FFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDE--- 103
F P + + T AL + ++ A +F ++P+ N+ +WNT++ AY+SS
Sbjct: 88 LFDRPDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGD 147
Query: 104 --------PIQ---SFMIFLQLVYNSPYFP------------NEFTLPFVIKAAARPVQF 140
P++ S+ I L + S N ++ AR
Sbjct: 148 ACTLFNGMPVRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSV 207
Query: 141 RVGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+A+ GM E ++V N++I YA + A+ +F+ + +D+ SWN MI+GF++
Sbjct: 208 NEARALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNK 267
Query: 200 FFEKAIELYREMEVENV 216
E+A EL+ +M NV
Sbjct: 268 NLERAQELFDKMPRRNV 284
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 12/197 (6%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
AL +++ ARK+FD++P+ N+ W T++ + S ++ +F P
Sbjct: 169 ALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALF-------DGMPERN 221
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ + + + +A H +F D+ N +I + +L A +F +
Sbjct: 222 VVSWNAMISGYARNHMIDEA-HDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMP 280
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+++VV+W +M++G+++ E A++L+ M ++ ++P++VT + + AC+ L G
Sbjct: 281 RRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQ 340
Query: 242 VSSHIEKNGIKMDLTFE 258
V I K + D E
Sbjct: 341 VHQMICKTPFQFDTFIE 357
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 15/176 (8%)
Query: 51 FFFDPYSASKLFTP--------CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
FF+D +A + L+ + AR++FD+ P ++ +W L+ AY+
Sbjct: 21 FFYDSAAAVDVSNHVQDPNRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYA--- 77
Query: 103 EPIQSFMIFLQLVYNSP-YFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDLVISNSL 160
Q + + +++ P N T ++ AR + +A+ G M E ++V N++
Sbjct: 78 --CQGMLHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTM 135
Query: 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+ Y G + A +F + +D SWN +++ V G +KA +L+ M NV
Sbjct: 136 LEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALVRSGNIDKARKLFDRMPERNV 191
>gi|255553021|ref|XP_002517553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543185|gb|EEF44717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 109/217 (50%), Gaps = 8/217 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH ++ F D + + L T + AR +FD++ Q + +WN +I Y
Sbjct: 223 KEIHCHVIRFGFETDVSAVNALIT--MYVKCGCVGSARTVFDKMLQRDRISWNAMISGYF 280
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ E ++ +FLQ++ S P+ T+ VI A R+G+ IHG + +D+
Sbjct: 281 ENGECVEGLNLFLQMLELS-VDPDLMTMTSVISACELLGDDRLGREIHGYVVRTGYGNDV 339
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ + LI YA G A VF +DVVSW +MISG+ +KA+E Y+ ME+
Sbjct: 340 SVHSLLIQMYASLGYWKEAEKVFSETECRDVVSWTAMISGYEGNLMHDKALETYKNMELA 399
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+ PDE+T+ VLSACA L+ G+ + + G+
Sbjct: 400 GIVPDEITIACVLSACASLGQLDLGMRLHELANRMGL 436
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 101/192 (52%), Gaps = 6/192 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
FS L A +F ++ + NL++WN L+ Y+ + ++ ++ ++++ P+ +T P
Sbjct: 150 FSDLNNAWNVFGRMGERNLFSWNVLVGGYAKAGFFDEALCLYHRMLW-VGIKPDIYTFPC 208
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+++ F G+ IH FE D+ N+LI Y CG + A VF + ++D
Sbjct: 209 VLRSCGGANDFIRGKEIHCHVIRFGFETDVSAVNALITMYVKCGCVGSARTVFDKMLQRD 268
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+SWN+MISG+ E G + + L+ +M +V PD +TM V+SAC D G +
Sbjct: 269 RISWNAMISGYFENGECVEGLNLFLQMLELSVDPDLMTMTSVISACELLGDDRLGREIHG 328
Query: 245 HIEKNGIKMDLT 256
++ + G D++
Sbjct: 329 YVVRTGYGNDVS 340
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 8/179 (4%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S ++ A ++F I N+ +W ++I ++ ++ F ++ N PN TL
Sbjct: 451 SKCKCIDKALEVFHCIQDKNVISWTSIILGLRINNRSFEALSFFRKMKRNLK--PNSITL 508
Query: 128 PFVIKAAARPVQFRVGQAIHG-MFEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A AR G+ IH + +V + N+++ Y CG L +A F + K
Sbjct: 509 ISVLSACARIGALMCGKEIHAHALKTAMVYEGFLPNAILDMYVRCGKLGLALNQFNLY-K 567
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+DV +WN ++ G+ E G A+EL+ +M V PD+VT + +L AC++ +E W
Sbjct: 568 EDVAAWNILMRGYAEQGQGAMAVELFHKMIESKVNPDDVTYIALLCACSRSGMVEEAKW 626
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 113/231 (48%), Gaps = 21/231 (9%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY---ARKMFDQIPQPNL 88
L + + + IH ++ T + D S L + ++SL Y A K+F + ++
Sbjct: 316 LLGDDRLGREIHGYVVRTGYGNDVSVHSLL-----IQMYASLGYWKEAEKVFSETECRDV 370
Query: 89 YTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
+W +I Y + D+ ++++ + + + P+E T+ V+ A A Q +G
Sbjct: 371 VSWTAMISGYEGNLMHDKALETY----KNMELAGIVPDEITIACVLSACASLGQLDLGMR 426
Query: 146 IHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
+H + ++++NSLI Y+ C + A VF I K+V+SW S+I G
Sbjct: 427 LHELANRMGLMSFVIVANSLIDMYSKCKCIDKALEVFHCIQDKNVISWTSIILGLRINNR 486
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+A+ +R+M+ N+KP+ +T++ VLSACA+ L G + +H K +
Sbjct: 487 SFEALSFFRKMK-RNLKPNSITLISVLSACARIGALMCGKEIHAHALKTAM 536
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 106 QSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFY 164
++F+ ++L N Y ++ V+ + P+ R+G N+L+ Y
Sbjct: 102 ETFIALIRLCENKRGYTEGDYVFKAVLNSLVNPLSVRLG--------------NALLSMY 147
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
DL A+ VF +G++++ SWN ++ G+ + GFF++A+ LY M +KPD T
Sbjct: 148 VRFSDLNNAWNVFGRMGERNLFSWNVLVGGYAKAGFFDEALCLYHRMLWVGIKPDIYTFP 207
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
VL +C D G + H+ + G + D++
Sbjct: 208 CVLRSCGGANDFIRGKEIHCHVIRFGFETDVS 239
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + L AR++FD +P+ ++ +WN++I Y+ + E S +F +++ P+E
Sbjct: 334 AYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEV 393
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDD---LVIS--NSLIHFYAVCGDLAMAYCVFVMI 180
T+ V+ A ++ + + + L IS NSLI Y+ CG +A A+ +F +
Sbjct: 394 TIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM 453
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G +DVVS+N++ISGF G ++AI+L ME E ++PD VT + VL+AC+ L G
Sbjct: 454 GTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEG 512
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 39/227 (17%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ LE AR+ FD++P+ ++ +WN + AY+ + P ++ +F Q++ P++ T
Sbjct: 203 AKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML-EEGITPDDTTW 261
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNS-----LIHFYAVCGDLAMAYCVFVMIG- 181
I + + + +I M + ++ NS L+ +A G+L +A +F +G
Sbjct: 262 VVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGS 321
Query: 182 -------------------------------KKDVVSWNSMISGFVEGGFFEKAIELYRE 210
K+DVVSWNSMI+G+ + G +IEL++E
Sbjct: 322 QRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKE 381
Query: 211 M-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
M +++PDEVT+ VLSAC L+ WV + + IK+ ++
Sbjct: 382 MISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGIS 428
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 6/205 (2%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
++N +QL++ H ++ Y S L C + Y +F P P+ ++
Sbjct: 11 ISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCT-RLHAHPAYVDSIFTSSPSPDASVYS 69
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
+++ YS Q +F + ++ P F ++IK A + + D
Sbjct: 70 CMLKYYSRMGAHNQVVSLF-KCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAYVLKLGHID 128
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D I N+++ YA G + +A +F + ++ + WNSMISG + G +A+ L+ M
Sbjct: 129 DHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMP 188
Query: 213 VENVKPDEVTMVVVLSACAKKRDLE 237
N+ +T +++ AK DLE
Sbjct: 189 ARNI----ITWTSMVTGYAKMGDLE 209
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 35/163 (21%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ AR +F+Q+ + L WN++I S ++ ++F +
Sbjct: 146 VDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMM------------------ 187
Query: 133 AAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
P + +++ S++ YA GDL A F + ++ VVSWN+M
Sbjct: 188 ----PAR-------------NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQ 230
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
S + + ++A+ L+ +M E + PD+ T VV +S+C+ D
Sbjct: 231 SAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGD 273
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A + L AR++FD +P+ ++ +WN++I Y+ + E S +F +++ P+E
Sbjct: 334 AYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEV 393
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDD---LVIS--NSLIHFYAVCGDLAMAYCVFVMI 180
T+ V+ A ++ + + + L IS NSLI Y+ CG +A A+ +F +
Sbjct: 394 TIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM 453
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G +DVVS+N++ISGF G ++AI+L ME E ++PD VT + VL+AC+ L G
Sbjct: 454 GTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEG 512
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 39/227 (17%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ LE AR+ FD++P+ ++ +WN + AY+ + P ++ +F Q++ P++ T
Sbjct: 203 AKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML-EEGITPDDTTW 261
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNS-----LIHFYAVCGDLAMAYCVFVMIG- 181
I + + + +I M + ++ NS L+ +A G+L +A +F +G
Sbjct: 262 VVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGS 321
Query: 182 -------------------------------KKDVVSWNSMISGFVEGGFFEKAIELYRE 210
K+DVVSWNSMI+G+ + G +IEL++E
Sbjct: 322 QRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKE 381
Query: 211 M-EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
M +++PDEVT+ VLSAC L+ WV + + IK+ ++
Sbjct: 382 MISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGIS 428
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 6/205 (2%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
++N +QL++ H ++ Y S L C + Y +F P P+ ++
Sbjct: 11 ISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCT-RLHAHPAYVDSIFTSSPSPDASVYS 69
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
+++ YS Q +F + ++ P F ++IK A + + D
Sbjct: 70 CMLKYYSRMGAHNQVVSLF-KCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVLKLGHID 128
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D I N+++ YA G + +A +F + ++ + WNSMISG + G +A+ L+ M
Sbjct: 129 DHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMP 188
Query: 213 VENVKPDEVTMVVVLSACAKKRDLE 237
N+ +T +++ AK DLE
Sbjct: 189 ARNI----ITWTSMVTGYAKMGDLE 209
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 35/163 (21%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ AR +F+Q+ + L WN++I S ++ ++F +
Sbjct: 146 VDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMM------------------ 187
Query: 133 AAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
P + +++ S++ YA GDL A F + ++ VVSWN+M
Sbjct: 188 ----PAR-------------NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQ 230
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
S + + ++A+ L+ +M E + PD+ T VV +S+C+ D
Sbjct: 231 SAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGD 273
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+F+ IP ++ +WN +++AY + + +V + PN TL V+ A
Sbjct: 182 ARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACR 241
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+G+ + GM E D ++ ++L+ Y CG++A A VF I KDVV+WN
Sbjct: 242 DEGDLVLGRWVEEWSKSAGM-ETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWN 300
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+MI+G+ + G +AI L+ M+ V PD++T+ VLSAC+ LE G + +
Sbjct: 301 AMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCR 360
Query: 250 GI 251
G+
Sbjct: 361 GL 362
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 85/161 (52%), Gaps = 7/161 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD I ++ WN +I Y+ + ++ +F + + P++ TL V+ A +
Sbjct: 284 ARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNM-KKAGVCPDKITLAGVLSACS 342
Query: 136 RPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G + G +++ + +L+ YA CGDL A VF + K+V SWN+
Sbjct: 343 AVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNA 402
Query: 191 MISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSAC 230
+I G G ++AI+ + M E+ +KPD++T + VLSAC
Sbjct: 403 LICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSAC 443
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-V 216
+SLI Y+ D A VF I +DVVSWN+M+ + G + + R+M + V
Sbjct: 167 HSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAV 226
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
P+ VT+ VVL+AC + DL G WV + G++ D
Sbjct: 227 VPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETD 264
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+F+ IP ++ +WN +++AY + + +V + PN TL V+ A
Sbjct: 182 ARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACR 241
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+G+ + GM E D ++ ++L+ Y CG++A A VF I KDVV+WN
Sbjct: 242 DEGDLVLGRWVEEWSKSAGM-ETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWN 300
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+MI+G+ + G +AI L+ M+ V PD++T+ VLSAC+ LE G + +
Sbjct: 301 AMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCR 360
Query: 250 GI 251
G+
Sbjct: 361 GL 362
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 85/161 (52%), Gaps = 7/161 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD I ++ WN +I Y+ + ++ +F + + P++ TL V+ A +
Sbjct: 284 ARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNM-KKAGVCPDKITLAGVLSACS 342
Query: 136 RPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G + G +++ + +L+ YA CGDL A VF + K+V SWN+
Sbjct: 343 AVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNA 402
Query: 191 MISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSAC 230
+I G G ++AI+ + M E+ +KPD++T + VLSAC
Sbjct: 403 LICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSAC 443
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-V 216
+SLI Y+ D A VF I +DVVSWN+M+ + G + + R+M + V
Sbjct: 167 HSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAV 226
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
P+ VT+ VVL+AC + DL G WV + G++ D
Sbjct: 227 VPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETD 264
>gi|302759985|ref|XP_002963415.1| hypothetical protein SELMODRAFT_61513 [Selaginella moellendorffii]
gi|300168683|gb|EFJ35286.1| hypothetical protein SELMODRAFT_61513 [Selaginella moellendorffii]
Length = 500
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 13/204 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
I A +D D + ++ C SL+ AR +FD++P+ ++ TWN +I AYS
Sbjct: 212 IQAHGYCSDVILDT-ALVDMYGKCG-----SLDDARMVFDKMPERDIVTWNAMIAAYSQH 265
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVI 156
+ ++F ++ ++ + P TL ++ A+ G+A+H DD LV
Sbjct: 266 GQGDKAFELYAEMEPQG-FKPELVTLVNLLTASCCLGDLSRGKAMHSRIIDDKLELTLVA 324
Query: 157 SNSLIHFYAVCGDLAMAYCVF-VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
N++++ YA CG LA A F MI +DV+SWN++I+G E G E +++L ++M ++
Sbjct: 325 ENAIVNMYAKCGSLAQAKLAFDGMIHPRDVISWNAIIAGNAENGGTETSLQLAKDMVLDG 384
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG 239
V PD T VL C+ LE G
Sbjct: 385 VAPDATTFTCVLLCCSHGGRLEQG 408
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 115/231 (49%), Gaps = 8/231 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + + + +HA +L + D + L A SL A ++F +P N+ WN
Sbjct: 98 LKDLARGRAVHAGLLVSGIQPDDFLRVALLNMYA--KLGSLGEATRIFHSMPTDNVVAWN 155
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE- 151
+I A+S SD P + + +++ P+ TL + A + G+AIH +
Sbjct: 156 VMIAAFSQSDRPSLALEFYWKMLAGGTR-PDFCTLISTLSAVSCLRLLSHGRAIHDSIQA 214
Query: 152 ----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
D+++ +L+ Y CG L A VF + ++D+V+WN+MI+ + + G +KA EL
Sbjct: 215 HGYCSDVILDTALVDMYGKCGSLDDARMVFDKMPERDIVTWNAMIAAYSQHGQGDKAFEL 274
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
Y EME + KP+ VT+V +L+A DL G + S I + +++ L E
Sbjct: 275 YAEMEPQGFKPELVTLVNLLTASCCLGDLSRGKAMHSRIIDDKLELTLVAE 325
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%)
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+L+ Y C + A VF I +K+ S+N +IS G + +A+ + M+ E
Sbjct: 20 CLQNALVQMYGKCRSMKEALAVFSTIARKNTYSYNILISAAARNGLYREALNAFERMKRE 79
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ D+ T V++AC +DL G V + + +GI+ D
Sbjct: 80 GIPRDKFTYADVITACCSLKDLARGRAVHAGLLVSGIQPD 119
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 105/187 (56%), Gaps = 6/187 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A ++FD++ ++ +WN++I Y S+ + I+ Q++Y + T+ V+
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV-DLATIISVLVG 260
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A +G+A+H + FE + SN+L+ Y+ CGDL A VF +G+++VVSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
SMI+G+ G + AI+L ++ME E VK D V + +L ACA+ L+ G V +I+
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380
Query: 249 NGIKMDL 255
N ++ +L
Sbjct: 381 NNMESNL 387
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 21/236 (8%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP----QPNLYTWNTLIR 96
++ QM D + + + CA S SL+ + + D I + NL+ N L+
Sbjct: 338 KLLQQMEKEGVKLDVVAITSILHACARS--GSLDNGKDVHDYIKANNMESNLFVCNALMD 395
Query: 97 AYSSSDEPIQSFMIFLQLVYN---------SPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
Y+ + +F +V P+ T+ V+ A A G+ IH
Sbjct: 396 MYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIH 455
Query: 148 GM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
G + D ++N+L+ Y CG L +A +F MI KD+VSW MI+G+ G+
Sbjct: 456 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+AI + EM ++PDEV+ + +L AC+ LE G W +I KN ++ E
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-WRFFYIMKNDFNIEPKLE 570
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 48/218 (22%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H+ + S D KL + A T L+ R++FD + + N+Y WN ++ Y+
Sbjct: 119 KKVHSIIKSNSVGVDGALGLKLVSFYA--TCGDLKEGRRVFDTMEKKNVYLWNFMVSEYA 176
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS 159
+ +S +F + V + I G +
Sbjct: 177 KIGDFKESICLF---------------------------KIMVEKGIEGKRPES------ 203
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
A+ +F + +DV+SWNSMISG+V G E+ + +Y++M + D
Sbjct: 204 -------------AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVD 250
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
T++ VL CA L G V S K+ + + F
Sbjct: 251 LATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINF 288
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 105/187 (56%), Gaps = 6/187 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A ++FD++ ++ +WN++I Y S+ + I+ Q++Y + T+ V+
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV-DLATIISVLVG 260
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A +G+A+H + FE + SN+L+ Y+ CGDL A VF +G+++VVSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
SMI+G+ G + AI+L ++ME E VK D V + +L ACA+ L+ G V +I+
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380
Query: 249 NGIKMDL 255
N ++ +L
Sbjct: 381 NNMESNL 387
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 21/236 (8%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP----QPNLYTWNTLIR 96
++ QM D + + + CA S SL+ + + D I + NL+ N L+
Sbjct: 338 KLLQQMEKEGVKLDVVAITSILHACARS--GSLDNGKDVHDYIKANNMESNLFVCNALMD 395
Query: 97 AYSSSDEPIQSFMIFLQLVYN---------SPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
Y+ + +F +V P+ T+ V+ A A G+ IH
Sbjct: 396 MYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIH 455
Query: 148 GM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
G + D ++N+L+ Y CG L +A +F MI KD+VSW MI+G+ G+
Sbjct: 456 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+AI + EM ++PDEV+ + +L AC+ LE G W +I KN ++ E
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-WRFFYIMKNDFNIEPKLE 570
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 48/218 (22%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H+ + S D KL + A T L+ R++FD + + N+Y WN ++ Y+
Sbjct: 119 KKVHSIIKSNSVGVDEALGLKLVSFYA--TCGDLKEGRRVFDTMEKKNVYLWNFMVSEYA 176
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS 159
+ +S +F + V + I G +
Sbjct: 177 KIGDFKESICLF---------------------------KIMVEKGIEGKRPES------ 203
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
A+ +F + +DV+SWNSMISG+V G E+ + +Y++M + D
Sbjct: 204 -------------AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVD 250
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
T++ VL CA L G V S K+ + + F
Sbjct: 251 LATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINF 288
>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 589
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 8/217 (3%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H QM+ + + + + T S F+ +E A K+F I + +L +WNTL+ A
Sbjct: 223 QLHCQMIKLNLEDSAFIGNVIIT--MYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCF 280
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLV 155
+ ++ +F ++ P++FT V+ A A R G+ IHG D+
Sbjct: 281 CKDHERALRVFRDMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVG 340
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+SN+L++ YA CG + +Y VF +++VSWN++I+ F G +A+E + +M+
Sbjct: 341 VSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTVG 400
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG-IWVSSHIEKNGI 251
+ PD VT V +L+AC +E G ++ +S E GI
Sbjct: 401 IHPDSVTFVGLLTACNHAGLVEEGQVYFNSMEEAYGI 437
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 21/222 (9%)
Query: 42 IHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+HA L T D ++ L++ C ++ +AR+MFD++ NL +W+ +I Y
Sbjct: 25 LHAAALKTGMLSDIIVSNHVINLYSKCG-----NVIFARRMFDEMSDRNLVSWSAIISGY 79
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-FEDDLV-- 155
+ +P+ + +F Q+ PNE+ VI A A G +H + V
Sbjct: 80 DQTGQPLLALNLFSQM----RIVPNEYVFASVISACASLTALSQGLQVHAQSLKLGCVSV 135
Query: 156 --ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+SN+LI Y CG A V ++ + + VS+N++I+GFVE EK IE ++ M
Sbjct: 136 SFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQ 195
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ PD T +L C D W + IK++L
Sbjct: 196 KGFAPDRFTFSGLLGICTSYDDF----WRGMQLHCQMIKLNL 233
>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
Length = 1108
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 100/194 (51%), Gaps = 13/194 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SLE A +F ++ + N+ +W LI A + ++F +F ++ S PN +TL +
Sbjct: 74 GSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAM 133
Query: 131 IKAAARPVQFRVGQAIHGMFED---------DLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ A A +G++IH M + ++ N++I+ YA CG L A VF+ I
Sbjct: 134 LNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIP 193
Query: 182 KKDVVSWNSMISGFV-EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+KDVVSW +M + E F+ A+ ++REM ++ + P+ +T + L AC RD G
Sbjct: 194 EKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GT 250
Query: 241 WVSSHIEKNGIKMD 254
W+ S + + + D
Sbjct: 251 WLHSLLHEASLGFD 264
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE AR +F+++ ++ +W ++ A + + + + +F ++ P++FTL +
Sbjct: 588 LEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEG-VIPDKFTLATTLD 646
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+G+ IH E D+ + N+L++ Y+ CGD A F + +D+VS
Sbjct: 647 TCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVS 706
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
WN M + + + G ++A+ L+R+M++E VKPD++T L+
Sbjct: 707 WNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLN 747
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 24/195 (12%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDE--PIQSFMIFLQLVYNSPYFPNEFTLP 128
SLE A +F IP+ ++ +W + AY+ P + IF +++ P PN T
Sbjct: 180 GSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYP-DALRIFREMLLQ-PLAPNVITF- 236
Query: 129 FVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
I A R G +H + + D + SN+LI+ Y CGD AY VF + +
Sbjct: 237 --ITALGACTSLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASR 294
Query: 184 ---DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG- 239
D+VSWN+MIS VE G A+ ++R + +E ++P+ VT++ +L+A A ++FG
Sbjct: 295 QELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAAS-GVDFGA 353
Query: 240 -------IWVSSHIE 247
IW S ++
Sbjct: 354 ARGFHGRIWESGYLR 368
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 29/243 (11%)
Query: 12 PRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPC--- 65
P PN T G T+ + +H+ + FDP +++ L + C
Sbjct: 228 PLAPNVITFITALGA------CTSLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDW 281
Query: 66 --ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123
A S F ++ +R+ D L +WN +I A + + IF +L PN
Sbjct: 282 EGAYSVFKAMA-SRQELD------LVSWNAMISASVEAGRHGDAMAIFRRLRLEGMR-PN 333
Query: 124 EFTLPFVIKA-AARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVF 177
TL ++ A AA V F + HG + D+VI N++I YA CG + A+ VF
Sbjct: 334 SVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVF 393
Query: 178 VMIG-KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
I K DV+SWN+M+ + F K + + M + + P++V+ + +L+AC+ L
Sbjct: 394 RRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEAL 453
Query: 237 EFG 239
+FG
Sbjct: 454 DFG 456
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 5/222 (2%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN--LYTWNTLIRA 97
++IH+ +L+ + S + + S+ A +F ++P P+ L TWN ++ A
Sbjct: 457 RKIHSLILTRRRDYVESSVATMLVS-MYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGA 515
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ-AIHGMFEDDLVI 156
Y+ +D ++F ++++ P+ + V+ + + +V + I +
Sbjct: 516 YAQNDRSKEAFGALMEML-QGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACL 574
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+LI + C +L A VF + DVVSW +M+S E F++ L+R M++E V
Sbjct: 575 ETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGV 634
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
PD+ T+ L C L G + + + + G++ D+ E
Sbjct: 635 IPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVE 676
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A F+ + +L +WN + AY+ + ++ ++F Q+ P++ T + +
Sbjct: 692 ALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVK-PDKLTFSTTLNVSG 750
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ H + + D+ ++ L+ YA CG L A +F VV N+
Sbjct: 751 GSALVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNA 810
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+I + GF E+A++++ +M+ E V+PD T+V ++SAC +E G
Sbjct: 811 IIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEG 859
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
E L + N LI+ Y CG L A+ +F + +++VVSW ++IS + G F +A L+R
Sbjct: 56 LEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFR 115
Query: 210 EMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
M +E + P+ T+V +L+ACA RDL G + + I + G++
Sbjct: 116 TMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLE 159
>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Vitis vinifera]
Length = 729
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 7/172 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A S +E A ++F+ + PNL +WNT+I + + +Q F +L+ S PN +
Sbjct: 426 AFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLM-STLKPNAY 484
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLVIS-----NSLIHFYAVCGDLAMAYCVFVMI 180
TL V+ A R G+ IHG V S N+LI YA CGDL + +F ++
Sbjct: 485 TLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVM 544
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREME-VENVKPDEVTMVVVLSACA 231
+D+VSWN+MIS + + G ++A+ ++ M+ VKPD+ T VLSAC+
Sbjct: 545 NGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACS 596
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 113/216 (52%), Gaps = 11/216 (5%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSS---LEYARKMFDQIPQPNLYTWNTLIRA 97
++HAQ + F A + A++ +SS L +FD++ + +L +WN +I
Sbjct: 305 QVHAQAIKMGF-----EACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMN 359
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI--HGMFEDDLV 155
Y+ + + + FLQ+ + P+EFT+ ++ ++ ++ QA+ +
Sbjct: 360 YAQGNFYRLAILAFLQM-QRAGIEPDEFTIGSLLASSESLEIVKMFQALVSKNGLNSKIE 418
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+SN+L+ ++ G + AY VF + +++SWN++ISGF+ GF + +E + E+ +
Sbjct: 419 VSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMST 478
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+KP+ T+ +VLS CA L G + +I ++G+
Sbjct: 479 LKPNAYTLSIVLSICASISALRHGKQIHGYILRSGV 514
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 18/207 (8%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D YS + L + C + + YA +F+Q P+ WN +I + + + +F +
Sbjct: 118 DVYSWTTLLSAC--TKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFRE 175
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG 168
+ + +++T V+ + + G+ +H + F + N+L+ Y G
Sbjct: 176 M-HQLGVRHDKYTFASVLSLCSLEL-LDFGREVHTLVIKTGFLVRASVINALLTMYFNSG 233
Query: 169 DLAMAYCVFVMIGKK--DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
+A AY VF D +++N MI G G E+A+ +++EM+ ++P E+T V V
Sbjct: 234 KVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSV 293
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIKM 253
+S+C+ R VS + IKM
Sbjct: 294 MSSCSSAR-------VSHQVHAQAIKM 313
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 78/196 (39%), Gaps = 39/196 (19%)
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
N L+ + S S +F+Q +++S Y P+ FTL + A A G +H
Sbjct: 21 NQLLAELTRSHHNSASVQLFVQ-IHSSNYLKPDHFTLSSTLTACANLRYAASGNQLHAYS 79
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS------------ 193
+ + N+L+ FYA DL VF I DV SW +++S
Sbjct: 80 IQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIGYAC 139
Query: 194 -------------------GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
G E E A+ L+REM V+ D+ T VLS C+ +
Sbjct: 140 HLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCSLEL 199
Query: 235 DLEFGIWVSSHIEKNG 250
L+FG V + + K G
Sbjct: 200 -LDFGREVHTLVIKTG 214
>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 591
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 9/233 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQPNLYTWN 92
T + L++IHA +L T + F+ ALS + Y+ ++F Q P L N
Sbjct: 22 TGKLHLRQIHAVLLRTSLIRNSDVFHHFFSRLALSLIPRDINYSCRVFSQRLNPTLSHCN 81
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFE 151
T+IRA+S S P + F +F L N + N + F +K + G IHG +F
Sbjct: 82 TMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIHGKIFS 141
Query: 152 D----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
D D ++ +L+ Y+ C + A VF I ++D VSWN +IS ++ + L
Sbjct: 142 DGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLVL 201
Query: 208 YREMEVE---NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ +M+ + VKPD VT ++ L ACA L+FG V I++NG+ L
Sbjct: 202 FDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNL 254
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 103/201 (51%), Gaps = 15/201 (7%)
Query: 41 RIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+IH ++ S F D + L++ C ST A K+FD+IPQ + +WN LI
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENST-----DACKVFDEIPQRDTVSWNVLISC 188
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYF--PNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-- 153
Y + ++F ++ + P+ T ++A A G+ +H +++
Sbjct: 189 YLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGL 248
Query: 154 ---LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
L +SN+L+ Y+ CG + AY VF + +++VVSW +MISG GF ++AIE + E
Sbjct: 249 SGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNE 308
Query: 211 MEVENVKPDEVTMVVVLSACA 231
M + P+E T+ +LSAC+
Sbjct: 309 MLKFGISPEEQTLTGLLSACS 329
>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
gi|194705708|gb|ACF86938.1| unknown [Zea mays]
gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
Length = 635
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 104/191 (54%), Gaps = 7/191 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F L+ AR +FD++P ++ +W ++ Y + + F +F++++ S PNEFT
Sbjct: 208 AKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMM-RSGILPNEFTY 266
Query: 128 PFVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V++A A ++G+ +HG D ++L+H Y+ GD+ A VF + K
Sbjct: 267 AGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPK 326
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
D+VSW +MISG+ + G ++A+ + + +PD VT V VLSACA ++ G+ +
Sbjct: 327 PDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGI 386
Query: 243 SSHI-EKNGIK 252
I +K GI+
Sbjct: 387 FHSIKDKYGIE 397
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 7/185 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY--NSPYFPNEFTLPF 129
L AR +FD++P+ + ++W+ ++ A+ +P + I+ +++ NEFT
Sbjct: 108 GLASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASS 167
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+ AA R G+ +H + D V+ ++L YA G L A VF + +D
Sbjct: 168 ALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRD 227
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VVSW +M+ + + G + L+ M + P+E T VL ACA+ + G V
Sbjct: 228 VVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHG 287
Query: 245 HIEKN 249
+ K+
Sbjct: 288 RMAKS 292
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 87/210 (41%), Gaps = 31/210 (14%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T++K K++H +M + ++ S L S + + A ++F +P+P+L +W
Sbjct: 277 TSEKLGKQVHGRMAKSRTGDSCFAGSALVH--MYSKYGDMGTAMRVFRGMPKPDLVSWTA 334
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
+I Y+ + +P ++ F ++ +S + P+ T V+ A A G I +D
Sbjct: 335 MISGYAQNGQPDEALHCF-DMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDK 393
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
I ++ H+ CV ++ + G FE+A ++ M
Sbjct: 394 YGIEHTADHY----------ACVIDLLSRS---------------GLFERAEDMINTMP- 427
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
VKP++ +L C +++ W +
Sbjct: 428 --VKPNKFLWASLLGGCRIHKNVRLAWWAA 455
>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
Length = 703
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 109/205 (53%), Gaps = 8/205 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
KRIH ++ + + A+ + T F + AR++F+ I N+ +WN ++ AY+
Sbjct: 206 KRIHDRIRGSHLEANVTVATAIVT--MYGKFGKVGMARQVFNGIQHKNVVSWNAMLGAYT 263
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
++ ++ ++ ++V +E T+ + +A ++G +H + ++ ++
Sbjct: 264 QNNLDREALEVYHEMVAQKVQ-RDEVTVVIALGISASLRLLKLGIELHELSVAHGYDSNI 322
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+LI Y C +L A VF + DVVSW ++I + + G +A+ELY++ME E
Sbjct: 323 KVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALELYKQMEGE 382
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
++PD+VT VLSAC+ DLE G
Sbjct: 383 GMEPDKVTFTSVLSACSNTSDLELG 407
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 18/217 (8%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF---SSLEYARKMFDQIPQPNLY 89
L + ++ K+IH++ L+ S+S + +S + S L+ AR +FD+I ++
Sbjct: 100 LRDLEEGKKIHSRALARGL-----SSSIIVQNALVSMYARCSRLDVARVVFDKIESKSVV 154
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR-PVQFRVGQAIHG 148
+WN +I A + E Q+ +F ++ PNE T V A + P VG+ IH
Sbjct: 155 SWNAMIAACARQGEAEQALQLFKRM----ELEPNEVTFASVFNACSLLPDHREVGKRIHD 210
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
E ++ ++ +++ Y G + MA VF I K+VVSWN+M+ + + +
Sbjct: 211 RIRGSHLEANVTVATAIVTMYGKFGKVGMARQVFNGIQHKNVVSWNAMLGAYTQNNLDRE 270
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
A+E+Y EM + V+ DEVT+V+ L A R L+ GI
Sbjct: 271 ALEVYHEMVAQKVQRDEVTVVIALGISASLRLLKLGI 307
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 10/175 (5%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ AR++F ++ ++ +W LI AY+ ++ ++ Q+ P++ T V+
Sbjct: 338 LDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALELYKQM-EGEGMEPDKVTFTSVLS 396
Query: 133 AAARPVQFRVGQAIHGM-------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-KD 184
A + +GQA+H F D ++++ +LI+ Y CG L ++ +F K
Sbjct: 397 ACSNTSDLELGQALHARLLARKDGFSDGVLVA-ALINMYVKCGRLDLSSEIFQSCKDTKA 455
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
VV WN+MI+ + + G+ A++LY M+ + PDE T+ +LSACA+ +DLE G
Sbjct: 456 VVVWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELQDLEKG 510
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 17/201 (8%)
Query: 42 IHAQMLS-TDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPN-LYTWNTLIR 96
+HA++L+ D F D + L + C L+ + ++F + WN +I
Sbjct: 410 LHARLLARKDGFSDGVLVAALINMYVKCG-----RLDLSSEIFQSCKDTKAVVVWNAMIT 464
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------ 150
AY + ++ ++ P+E TL ++ A A G+ +H
Sbjct: 465 AYEQEGYSRAAVDLY-DMMKQRGLDPDESTLSSILSACAELQDLEKGEQLHVEIIASRDC 523
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ V+ N+LI YA CG++ A VF + +DVVSW +IS +V+GG +A+ LYR
Sbjct: 524 SQNPVVLNALISMYASCGEIREAKAVFKRMKNRDVVSWTILISAYVQGGDARRALRLYRR 583
Query: 211 MEVENVKPDEVTMVVVLSACA 231
M VE V+P E T + V AC
Sbjct: 584 MLVEGVQPTEPTFLCVFLACG 604
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ IH D + + L+ Y CG + A VF + ++ + SWN +I+ F +
Sbjct: 5 GRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFAK 64
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
KAIE++R M+ +KPD T+ VL AC+ RDLE G + S G+
Sbjct: 65 NRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGL 118
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 106/195 (54%), Gaps = 8/195 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH L ++F ++ L T S + +E ARK+FD+ P+ +L +WN +I Y+ +
Sbjct: 341 IHGYCLKSNFLSHASVSTALTT--VYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQN 398
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
+ +F ++ S + PN T+ ++ A A+ +G+ +H + FE + +
Sbjct: 399 GLTEDAISLFREM-QKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYV 457
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S +LI YA CG +A A +F ++ KK+ V+WN+MISG+ G ++A+ ++ EM +
Sbjct: 458 STALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGI 517
Query: 217 KPDEVTMVVVLSACA 231
P VT + VL AC+
Sbjct: 518 TPTPVTFLCVLYACS 532
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 118/223 (52%), Gaps = 8/223 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T+ L + HAQ++ F D +KL LS ++ YAR +F + +P+++ +N
Sbjct: 31 TSISHLAQTHAQIILHGFRNDISLLTKLTQR--LSDLGAIYYARDIFLSVQRPDVFLFNV 88
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
L+R +S ++ P S +F L ++ PN T F I AA+ R G+ IHG
Sbjct: 89 LMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVD 148
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ +L++ ++++ Y + A VF + +KD + WN+MISG+ + + ++I+++
Sbjct: 149 GCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVF 208
Query: 209 REMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
R++ E+ + D T++ +L A A+ ++L G+ + S K G
Sbjct: 209 RDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTG 251
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 9/206 (4%)
Query: 41 RIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+IH+ T + Y + L++ C ++ +F + +P++ +N +I
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCG-----KIKMGSALFREFRKPDIVAYNAMIHG 296
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV-GQAIHGMFEDDLVI 156
Y+S+ E S +F +L+ + + + V + + + + G + F +
Sbjct: 297 YTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASV 356
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S +L Y+ ++ A +F +K + SWN+MISG+ + G E AI L+REM+
Sbjct: 357 STALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEF 416
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWV 242
P+ VT+ +LSACA+ L G WV
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWV 442
>gi|224080081|ref|XP_002306009.1| predicted protein [Populus trichocarpa]
gi|222848973|gb|EEE86520.1| predicted protein [Populus trichocarpa]
Length = 870
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 15/201 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLI 95
K IH +L + + +F AL +F +E A +F ++ +L +WN +I
Sbjct: 255 KEIHGYVLRHNELL-----ADVFVWNALVSFYLRVGRVEEAELLFRRMELRDLVSWNAII 309
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG------M 149
Y+S+ E ++ +F +L+ P+ TL +I A A+ VG+ IHG +
Sbjct: 310 AGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKMIHGYVLRHPL 369
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+D + N+L+ FYA C D+ AY F MI ++D++SWNSM+ VE G+ +EL R
Sbjct: 370 LCEDTSVGNALVSFYAKCDDIEGAYETFFMISRRDLISWNSMLDALVESGYNTWFLELLR 429
Query: 210 EMEVENVKPDEVTMVVVLSAC 230
M E PD VT++ V+ C
Sbjct: 430 WMLSEGTTPDSVTILSVVHFC 450
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++ C L + A FD I + ++ +WN +I ++ ++ +F +F ++
Sbjct: 174 MYAKCGLVC----QDAYAAFDSIDEKDVVSWNAIISGFAENNLMEDAFRLFSSML-KGQI 228
Query: 121 FPNEFTLPFVIKAAA---RPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCGDLA 171
PN TL ++ A + + G+ IHG D+ + N+L+ FY G +
Sbjct: 229 KPNYTTLANILPVCASFDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVE 288
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE-MEVENVKPDEVTMVVVLSAC 230
A +F + +D+VSWN++I+G+ G + KA+EL+ E + ++ ++PD VT++ ++ AC
Sbjct: 289 EAELLFRRMELRDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPAC 348
Query: 231 AKKRDLEFGIWVSSHIEKN 249
A+ R+L G + ++ ++
Sbjct: 349 AQSRNLHVGKMIHGYVLRH 367
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 8/189 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ A F+++P +L WN ++R Y+ +D Q+ +F +L + P+ T+ ++
Sbjct: 528 LDEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFHELQAHGIK-PDAVTIMSLLP 586
Query: 133 AAARPVQFRV-----GQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A ++ G AI F DL + +L YA CG + A+ +F +I KD++
Sbjct: 587 ACAEMASVQLIKQCHGYAIRSCF-GDLHLDGALQDVYAKCGSIGYAFKLFQLIPNKDLII 645
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+ +MI G+ G ++A+ + M +KPD V + VLSAC+ ++ G+ + IE
Sbjct: 646 FTAMIRGYAMHGMGKEALGTFFHMIELGIKPDHVIITTVLSACSHAGLVDEGLNIFYSIE 705
Query: 248 K-NGIKMDL 255
K +G+K+ +
Sbjct: 706 KVHGMKLTM 714
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 10/171 (5%)
Query: 71 SSLEYARKMFDQIPQPNLYT---WNTLIRAYSSSDEPIQSFMIFLQLVYNSPY-FPNEFT 126
+L+ ++K+F +I N WN L+ Y+ S + + ++ + Y P+ T
Sbjct: 73 GALDESKKLFGEIGSCNDRDPIFWNILLSGYAGSRVYDAETLRLFREMHGANYPKPSSVT 132
Query: 127 LPFVIKAAARPVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAM-AYCVFVMI 180
V+ AR +G+ AI + + N+L+ YA CG + AY F I
Sbjct: 133 AAIVLPVCARLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSI 192
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+KDVVSWN++ISGF E E A L+ M +KP+ T+ +L CA
Sbjct: 193 DEKDVVSWNAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANILPVCA 243
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145
P L WNT+I SD N + + + ++K+ A + G+A
Sbjct: 4 PYLKAWNTMI-----SD-------------CNGDFRQDYQAVASILKSCAGLSAIKWGRA 45
Query: 146 IHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVE 197
+HG +S +L++ YA CG L + +F IG +D + WN ++SG+
Sbjct: 46 LHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKKLFGEIGSCNDRDPIFWNILLSGYAG 105
Query: 198 GGFFE-KAIELYREMEVENV-KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
++ + + L+REM N KP VT +VL CA+ D+ G V+ + K+G+
Sbjct: 106 SRVYDAETLRLFREMHGANYPKPSSVTAAIVLPVCARLGDVYMGRSVNCYAIKSGL 161
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+LV ++I Y CG L AY F + D+ WN M+ + E +A+ L+ E++
Sbjct: 511 NLVTFKAIISGYINCGLLDEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFHELQ 570
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEF 238
+KPD VT++ +L ACA+ ++
Sbjct: 571 AHGIKPDAVTIMSLLPACAEMASVQL 596
>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
Length = 1008
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 112/208 (53%), Gaps = 14/208 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFS---SLEYARKMFDQIPQPNLYTWNTLIR 96
K IH ++ + F S+ + TP +S ++ +L AR +FD + N+ WN++I
Sbjct: 276 KSIHGFVVKSGF-----SSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMIS 330
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFE 151
AY+ + + ++F +F Q++ + PN T +I F G+++H +
Sbjct: 331 AYAQNQKSSEAFKMFQQML-KANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYRLD 389
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
L ++ +L+ YA GDL A +F + +++++SWNSMISG+ G +E +++ + +M
Sbjct: 390 SQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDM 449
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ E PD +++V +LSAC+K + G
Sbjct: 450 QFEGFDPDAISIVNILSACSKLEAILLG 477
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 10/226 (4%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N + LK + + ++ D D Y ++ C + E A F+ I +P+++ N +
Sbjct: 69 NIENLKPLGSVLIVRDLMRDEYVVAEFIISCF--HLGAPELALSAFEAIEKPSVFLQNLM 126
Query: 95 IRAYSSSDEPIQSFMIFLQL-VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
IR ++L+ V P ++FT PFVIKA + + +H +
Sbjct: 127 IRRLCDHGLFEDVLCVYLKCRVLGCP--SDDFTFPFVIKACTALGAVWIAEGVHCIVLRT 184
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
FE++LVI +L+ FYA G + A V I + D+V+WN++ISG+ GF ++ E+
Sbjct: 185 SFEENLVIQTALVDFYAKTGRMVKARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVL 244
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
R++ +KP+ T ++ C + + L+ G + + K+G D
Sbjct: 245 RQINEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFVVKSGFSSD 290
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 113/223 (50%), Gaps = 8/223 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +HA ++ A+ L + A L A +F Q+P+ NL +WN++I Y
Sbjct: 377 KSLHAHVMKYRLDSQLSVATALLSMYA--KLGDLNSADFIFYQMPRRNLLSWNSMISGYG 434
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ S F + + + P+ ++ ++ A ++ +G+A H F+ +L
Sbjct: 435 HNGLWEASMDAFCDMQFEG-FDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNL 493
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
ISN+L+ FY+ CG L+ ++ +F + ++ +SWN++ISG V G +KA+ L +M+ E
Sbjct: 494 NISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQE 553
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
++ D VT++ ++ C +L G+ + + K G D++
Sbjct: 554 KMELDLVTLISIIPICRVAENLIQGMTLHGYAIKTGFACDVSL 596
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR + D+I QP+L TWN LI YS + + F + Q + PN T +I
Sbjct: 209 ARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQ-INEMGLKPNVSTFASIIPLCT 267
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R +G++IHG F D ++ +LI YA G+L +A +F +K+VV WNS
Sbjct: 268 RMKCLDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNS 327
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
MIS + + +A +++++M N++P+ VT V ++ C + +G + +H+ K
Sbjct: 328 MISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMK 385
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 93/178 (52%), Gaps = 6/178 (3%)
Query: 79 MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138
+F+ + ++ WN ++ Y + +S F +L++ + P+ T +I A +
Sbjct: 714 LFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLH-ARVEPDYITFLSLISACVQLS 772
Query: 139 QFRVGQA-----IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
+ + I F+ +VISN+LI +A CG++++A +F + KD VSW++MI+
Sbjct: 773 SLNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIFEGLSSKDAVSWSTMIN 832
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
G+ G E A+ L +M + +KPD +T VLSAC+ ++ G + + + + G+
Sbjct: 833 GYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFIDQGWMIFNSMVEEGV 890
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 6/168 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S L + K+F ++P N +WNTLI + + ++ + L + + TL
Sbjct: 504 SDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKA-VALLHKMQQEKMELDLVTL 562
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+I G +HG F D+ + N+LI Y CGD+ +F ++
Sbjct: 563 ISIIPICRVAENLIQGMTLHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVMPW 622
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+ +VSWN++I+G+ + + + +M E KP+ VT++ +L +C
Sbjct: 623 RSIVSWNALITGYRFHYLQNEVMASFCQMIREGQKPNYVTLLNLLPSC 670
>gi|125554337|gb|EAY99942.1| hypothetical protein OsI_21945 [Oryza sativa Indica Group]
Length = 465
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 7/224 (3%)
Query: 37 KQLKRIHAQML-STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+ L+ +H ++L T A C + L AR + D P+P+ Y + ++
Sbjct: 38 RSLRALHGRLLLRTSGLLRGIRARTKLLSC-YAALGDLASARGVLDGTPRPDSYAYRVML 96
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIH----GMF 150
+ + + + P E L +KA R FR G+ +H
Sbjct: 97 GWLVGAGSHADAVALHRDMRRRCPAAARAEVVLSLALKACVRSADFRYGRRLHCDVVKAG 156
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D + NSL+ YA GDL A VF + +++VVSW SM+SG ++ GF E+ + L+ E
Sbjct: 157 GADGFVMNSLVDMYAKSGDLENARKVFDRVPERNVVSWTSMLSGSIQNGFAEEGLVLFNE 216
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
M +NV P E TMV VL+ACA L G W+ + K+G+ +
Sbjct: 217 MRKDNVHPSEYTMVSVLAACAMLGCLHQGRWIHGSVIKDGLSTN 260
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 18/189 (9%)
Query: 38 QLKRIHAQM----LSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
Q + IH + LST+ F S ++ C LE AR++FD++ ++ W
Sbjct: 244 QGRWIHGSVIKDGLSTNSFISA-SLLDMYAKC-----EKLEDARRVFDELEFVDIVLWTA 297
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------ 147
+I Y+ + P+ + +FL + S PN T+ VI A+A+ +G++IH
Sbjct: 298 MIVGYTQNKSPLDALQLFLHKKFVS-IVPNSVTIATVISASAQLHHLPLGRSIHAIGVKL 356
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
G E D V+ N+L+ YA C L A +F I KDVV+WNSM++G+ E G +++ L
Sbjct: 357 GTMESD-VVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVL 415
Query: 208 YREMEVENV 216
+ M ++ +
Sbjct: 416 FNRMRMQGL 424
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
LE ARK+FD++P+ N+ +W +++ + + ++F ++ ++ + P+E+T+ V+
Sbjct: 176 LENARKVFDRVPERNVVSWTSMLSGSIQNGFAEEGLVLFNEMRKDNVH-PSEYTMVSVLA 234
Query: 133 AAARPVQFRVGQAIHG-MFEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A G+ IHG + +D L IS SL+ YA C L A VF + D+V
Sbjct: 235 ACAMLGCLHQGRWIHGSVIKDGLSTNSFISASLLDMYAKCEKLEDARRVFDELEFVDIVL 294
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
W +MI G+ + A++L+ + ++ P+ VT+ V+SA A+ L G
Sbjct: 295 WTAMIVGYTQNKSPLDALQLFLHKKFVSIVPNSVTIATVISASAQLHHLPLG 346
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 13/237 (5%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN 87
RH H + QL +IHA +L S + C + YA +F Q PN
Sbjct: 14 RHLHGRKTRTQLPQIHAHILRHHLHQSNQILSHFISVCG--ALDKMGYANLVFHQTQNPN 71
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
L +N++I+ YS S ++F Q+ N +P+EFT ++K+ + R+G+ +H
Sbjct: 72 LLLFNSMIKGYSLCGPSENSLLLFSQM-KNRGIWPDEFTFAPLLKSCSGICDNRIGKGVH 130
Query: 148 GM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD-----VVSWNSMISGFVE 197
G+ FE I +I Y CG + A VF + +D VVSWNSMI+G +
Sbjct: 131 GVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWNSMIAGLEQ 190
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
G +A+EL+REM +PD+ T+V +L CA+ ++ G W+ S+ E + + D
Sbjct: 191 SGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRD 247
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 17/190 (8%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLY-----TWNTLIRAYSSSDEPIQSFMIFLQLV 115
L+T C +E A+K+FD++ ++ +WN++I S ++ +F ++
Sbjct: 151 LYTSCG-----RMEDAKKVFDEMLDRDMRDRSVVSWNSMIAGLEQSGRDGEALELFREM- 204
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG------MFEDDLVISNSLIHFYAVCGD 169
++ + P++ T+ ++ AR VG+ IH + D + + NSL+ FY CG
Sbjct: 205 WDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGI 264
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L A+ VF + +K+VVSWN+MISG G E +L+ EM + V+P++ T V VLS
Sbjct: 265 LETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSC 324
Query: 230 CAKKRDLEFG 239
CA +E G
Sbjct: 325 CAHAGLVERG 334
>gi|147796458|emb|CAN74807.1| hypothetical protein VITISV_022137 [Vitis vinifera]
Length = 437
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 20/232 (8%)
Query: 31 HFLTNQ-KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
HF N +K++HA +++ P A + CA FSS YA F + PNL+
Sbjct: 19 HFKPNSIHHIKQLHAHLITNAVSSPPLLAKLIHHYCA---FSSPHYAYTFFIHLRSPNLF 75
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+NTLI+ P S ++F V ++FT F + A AR G+ IH
Sbjct: 76 LFNTLIKCL----PPSSSILVFADWVSREALVFDDFTYIFALGACARSPSLWEGRQIHAR 131
Query: 150 FEDDLVISNSL-----IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG-----G 199
V SN L IHFYA D+A+A VF + K+ V+WN+MI+G+
Sbjct: 132 ILKQGVWSNVLVQTTAIHFYANNNDVALARLVFDEMRKRSSVTWNAMITGYCSQRGKVVC 191
Query: 200 FFEKAIELYREMEVE--NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+ A+ L+R M V+ VKP + TMV VLSA ++ LE G+ V +IEK
Sbjct: 192 YARDALVLFRAMLVDACGVKPTDTTMVCVLSAASQLGVLETGVGVHGYIEKT 243
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 33/171 (19%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPI-----QSFMIFLQLVYNSPYF-PNEFTLPF 129
AR +FD++ + + TWN +I Y S + + ++F ++ ++ P + T+
Sbjct: 160 ARLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYARDALVLFRAMLVDACGVKPTDTTMVC 219
Query: 130 VIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
V+ AA++ G +HG E + LA A VFV G D+
Sbjct: 220 VLSAASQLGVLETGVGVHGYIEKTV---------------LAPANDVFVGTGLVDI---- 260
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
G ++A+EL EM VKP+ VT + SAC +E G+
Sbjct: 261 --------HGRGKEALELLDEMVAYGVKPNAVTFTSLFSACCHAGLVEEGL 303
>gi|255541023|ref|XP_002511576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550691|gb|EEF52178.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 119/284 (41%), Gaps = 67/284 (23%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N LK+ HA +L D KL C + S++YA +F P P+++ +NTL
Sbjct: 17 NVASLKQFHANVLKIGLQNDLLLIGKLLLHCTIVLSDSIDYALSLFRDTPNPDVFMYNTL 76
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
IR + SD P +S FL+L S P+ F+ FV+KAAA R G +H
Sbjct: 77 IRGLAESDSPQKSIATFLELRKESALSPDSFSFAFVLKAAAYLRSLRGGIQLHCQAWKYG 136
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI------------------------GK--- 182
L + +LI Y CG + A VF + GK
Sbjct: 137 LNAHLFVGTTLISMYGECGCVGYARQVFGEMHEPNVIAWNAVIAACFRGGDVKEAGKMFS 196
Query: 183 ----KDVVSWNSMISGFVEGGFFEKAIELYREMEVEN----------------------- 215
+D+ SWN M++G+V+ G + A E++ EM V++
Sbjct: 197 LMVFRDLTSWNVMLAGYVKIGELQLAREMFLEMAVKDDVSWSTMIVGFAHNGCFDEAFGY 256
Query: 216 --------VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+P+EV++ VLSACA+ EFG + IEK G+
Sbjct: 257 FRELLRKGTRPNEVSLTGVLSACAQAGAFEFGKILHGFIEKAGL 300
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 7/177 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ AR+MF ++ + +W+T+I ++ + ++F F +L+ PNE +L V
Sbjct: 217 GELQLAREMFLEMAVKDDVSWSTMIVGFAHNGCFDEAFGYFRELLRKGTR-PNEVSLTGV 275
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVF-VMIGKKD 184
+ A A+ F G+ +HG E + ++N+L+ Y+ CG+L MA VF M KK
Sbjct: 276 LSACAQAGAFEFGKILHGFIEKAGLLWIISVNNALLDTYSKCGNLGMAQLVFERMPEKKS 335
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
++SW SM++ G E+AI+L+ EME +PDE+T +++L AC+ +E G W
Sbjct: 336 IISWTSMMACLAMHGLGEEAIKLFHEMEEYGTRPDEITFILLLYACSHAGLVEQGSW 392
>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 102/182 (56%), Gaps = 6/182 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ A+++FD++P+ N+ +W T++ +E + +F ++ + PN+ T +
Sbjct: 273 LKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDG-IRPNQVTFLGAVD 331
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + GQ +H M F+ D I +SL+ YA CG++ +A VF + G+KDV+S
Sbjct: 332 AGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVIS 391
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN MI+ + G +AI LY +M+ KP++VT V +LSAC+ ++ G+ + ++
Sbjct: 392 WNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMA 451
Query: 248 KN 249
K+
Sbjct: 452 KD 453
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 31/207 (14%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDE-----------PIQ---SFMIFLQLVYNS 118
++ AR +FD++P+ N+ +WNT++ AY+S+ P++ S+ I L + S
Sbjct: 118 VDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALVRS 177
Query: 119 PYFP------------NEFTLPFVIKAAARPVQFRVGQAI-HGMFEDDLVISNSLIHFYA 165
N + +I AR +A+ GM E ++V N++I YA
Sbjct: 178 GTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPERNVVSWNAMISGYA 237
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
+ A +F+ + ++DV SWN MI+GF++ +KA EL+ EM NV V+
Sbjct: 238 RNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNV----VSWTT 293
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIK 252
+++ C + + E + V + + +GI+
Sbjct: 294 MMNGCLQGNESEMALQVFNGMLVDGIR 320
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 93/193 (48%), Gaps = 10/193 (5%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
AL +++ AR++F+++P+ N+ +W T+I + S ++ +F P
Sbjct: 172 AALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALF-------DGMPER 224
Query: 125 FTLPFVIKAAARPVQFRVGQAIH---GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ + + R+ +A+ M E D+ N +I + DL A +F +
Sbjct: 225 NVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMP 284
Query: 182 KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
K++VVSW +M++G ++G E A++++ M V+ ++P++VT + + A + L G
Sbjct: 285 KRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQ 344
Query: 242 VSSHIEKNGIKMD 254
V I K + D
Sbjct: 345 VHQMICKTPFQFD 357
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 7/174 (4%)
Query: 44 AQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDE 103
A + STD F ++ L+ + AR++FD+ P ++ +W ++ AY+ +
Sbjct: 28 AAVFSTDAFSHVQDPNRRIAE--LAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQ 85
Query: 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-HGMFEDDLVISNSLIH 162
++ L++ N T ++ AR + +A+ M E ++V N+++
Sbjct: 86 LHEAS----ALLHRPDARRNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLE 141
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
YA G + A +F + +D SWN +++ V G ++A L+ M NV
Sbjct: 142 AYASAGRMGAACALFDGMPVRDAGSWNILLAALVRSGTMDEARRLFERMPERNV 195
>gi|296086392|emb|CBI31981.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 97/173 (56%), Gaps = 17/173 (9%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T ++ ++H M+ T P++ SKL S+ +YA +F+QIP PNL+ +NT
Sbjct: 42 TQTSEICQVHGSMVKTGLVNVPFTLSKLLA----SSIQDTDYAASIFNQIPSPNLFMFNT 97
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI------- 146
++R YS S P Q+F++F L ++F+ +KA AR + + GQ I
Sbjct: 98 MLRGYSISHHPKQAFVVFKGLRAQQMIL-DQFSFIPTLKACARELAYETGQGIHGVVVRS 156
Query: 147 -HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-DVVSWNSMISGFVE 197
HG+F + + N+L+HFY VCG + A+ +F I K D+VSWN+++ G+++
Sbjct: 157 GHGLFTN---VKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLGGYLQ 206
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 6/164 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ K+F Q+P+ ++ WN LI Y+ SD +S + + PN TL ++
Sbjct: 241 IDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLM-KREQVKPNSSTLVGLLS 299
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A VG I E+ D V+ +L+ Y CG L A VF + KDV S
Sbjct: 300 ACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCKCGFLEKAIDVFERMEIKDVKS 359
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
W +MISG+ G + AI ++ MEVE +P+EVT + VL+AC+
Sbjct: 360 WTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLAVLNACS 403
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 36/180 (20%)
Query: 76 ARKMFDQIP-QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
A ++FD+IP + +L +WNTL+ Y P +F +
Sbjct: 181 AHQLFDEIPPKIDLVSWNTLLGGYLQVPHPTMVTCLFGE--------------------- 219
Query: 135 ARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
M DL ++ +LI YA G + + + +F + KKDVV WN +I G
Sbjct: 220 --------------MCRKDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDG 265
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ + ++++ L + M+ E VKP+ T+V +LSACA G+ +S+++E+ I +D
Sbjct: 266 YAKSDLLQESLSLLQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALD 325
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L ARK+F+++P+ N+ +W T+I E ++ IF +++ + PN+ T V
Sbjct: 263 GDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSV 322
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKK 183
+ A + GQ +H + ++D + ++LI+ Y+ CG+L A +F M ++
Sbjct: 323 LGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQR 382
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
D+VSWN +I+ + G+ ++AI ++EM KPD+VT V +LSAC+ +E G+
Sbjct: 383 DLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGL 439
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 28/207 (13%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A K+F+++P N+ +WNT+I Y+ + + +F ++ + N T+ ++
Sbjct: 149 AEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN--TVMSMLAQCG 206
Query: 136 RPVQFR---------------------VGQAI---HGMFEDDLVISNSLIHFYAVCGDLA 171
R + R + +A+ M E DL N++I GDL
Sbjct: 207 RIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERMPERDLPSWNTMITGLIQNGDLR 266
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY-REMEVENVKPDEVTMVVVLSAC 230
A +F + KK+V+SW +MI+G V+ G E+A++++ R + KP++ T V VL AC
Sbjct: 267 RARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGAC 326
Query: 231 AKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ L G V I K + D TF
Sbjct: 327 SNLAGLGEGQQVHQIISKT-VYQDSTF 352
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 116/278 (41%), Gaps = 46/278 (16%)
Query: 6 TPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPC 65
T ISIPR TV+ R +TN + RI D +P +
Sbjct: 51 TAKISIPRKD----FTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVIS 106
Query: 66 ALSTFSSLEYARKMFDQI-PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
+E AR++FD++ + N+ TW ++ Y S++ + +F ++ PN+
Sbjct: 107 GYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEM-------PNK 159
Query: 125 FTLPFVIKAAARPVQFRVGQAIH---GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181
+ + R+ A++ M E ++V N+++ A CG + A +F +
Sbjct: 160 NVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMP 219
Query: 182 KKDVVSW--------------------------NSMISGFVEGGFFEKAIELYREMEVEN 215
++DV+SW N+MI+G ++ G +A +L+ EM +N
Sbjct: 220 ERDVISWTAMIAGLLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKN 279
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWV-SSHIEKNGIK 252
V ++ +++ C ++ + E + + S + NG K
Sbjct: 280 V----ISWTTMITGCVQEGESEEALKIFSRMLSTNGAK 313
>gi|297804658|ref|XP_002870213.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316049|gb|EFH46472.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 608
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 115/217 (52%), Gaps = 16/217 (7%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91
FLTN +HA L F + ++ + L + + ARK+FD++ +PN+ +W
Sbjct: 39 FLTNL-----LHALTLKLGFASNTFTVNHLVN--SYVKLKEINTARKVFDEMCEPNVVSW 91
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151
++I Y+ +P + +F ++ + PNE+T V KA + + R+G+ IH E
Sbjct: 92 TSVISGYNDMGQPQTALSMFQEMHEDRSVPPNEYTFASVFKACSALAESRIGKNIHARLE 151
Query: 152 -----DDLVISNSLIHFYAVCGDLAMAYCVF-VMIG-KKDVVSWNSMISGFVEGGFFEKA 204
++V+S+SL+ Y C D+ MA VF MIG ++VVSW SMI+ + + +A
Sbjct: 152 VSGLRRNIVVSSSLVDMYGKCNDVEMARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEA 211
Query: 205 IELYREMEVENV--KPDEVTMVVVLSACAKKRDLEFG 239
IEL+R ++ +P++ + V++A + L++G
Sbjct: 212 IELFRSFNADSTSDRPNQFMLASVINASSSLGRLQWG 248
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 17/231 (7%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQ--PN 87
L + K IHA++ + + +S L + C + +E AR++FD + N
Sbjct: 137 LAESRIGKNIHARLEVSGLRRNIVVSSSLVDMYGKC-----NDVEMARRVFDSMIGYGRN 191
Query: 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY-FPNEFTLPFVIKAAARPVQFRVGQAI 146
+ +W ++I AY+ + ++ +F +S PN+F L VI A++ + + GQ
Sbjct: 192 VVSWTSMITAYAQNARGHEAIELFRSFNADSTSDRPNQFMLASVINASSSLGRLQWGQIS 251
Query: 147 HGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
HG+ +E + V++ SL+ YA CG L A +F I V+S+ SMI + G
Sbjct: 252 HGLVTRGGYESNNVVATSLLDMYAKCGSLTCAEKIFFRIRCHSVISYTSMIMAKAKHGLG 311
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI-WVSSHIEKNGI 251
E A++L+ EM +KP+ VT++ VL AC+ + G+ +++S EK G+
Sbjct: 312 EAALQLFDEMVAGRIKPNYVTLLGVLHACSHSGLVNEGLEFLNSMAEKYGV 362
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 10/155 (6%)
Query: 111 FLQLVYNSPYFPNEF----TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLI 161
FL V P+ NEF T F++ + P + +H + F + N L+
Sbjct: 5 FLPNVRFVPHNQNEFFYLKTKAFLVHKLSEPTDLFLTNLLHALTLKLGFASNTFTVNHLV 64
Query: 162 HFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDE 220
+ Y ++ A VF + + +VVSW S+ISG+ + G + A+ +++EM E +V P+E
Sbjct: 65 NSYVKLKEINTARKVFDEMCEPNVVSWTSVISGYNDMGQPQTALSMFQEMHEDRSVPPNE 124
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
T V AC+ + G + + +E +G++ ++
Sbjct: 125 YTFASVFKACSALAESRIGKNIHARLEVSGLRRNI 159
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 115/234 (49%), Gaps = 22/234 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFT---PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++IH +L D + L T C + +E A +MF+++P+ +L +WNT+I
Sbjct: 129 RQIHGHVLKLGVLDDVSVVNSLLTMYWKCGV-----VEDAVQMFEKMPEVDLVSWNTMIS 183
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------ 150
+ S + +S M F +V+ +PN I + + G+ IHG+
Sbjct: 184 GFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLD 243
Query: 151 -EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS-----WNSMISGFVEGGFFEKA 204
E+ LV +SLI Y CG + A +F I KD V WN MISG+V G F +A
Sbjct: 244 VEEYLV--SSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQA 301
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ L+ +M V +KPD TMV + S C++ D+ FG + I K G+K ++ E
Sbjct: 302 LLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVE 355
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
K+F + NL W+ +I + S P ++ +F + + L V++A +
Sbjct: 373 KIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDG-LADSGILVAVLRACSSL 431
Query: 138 VQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
G IHG+ F D+ + ++L+ YA C D+ + VF+ + +KD+VSWN++I
Sbjct: 432 TLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALI 491
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
SG+ + ++A++ +R+M++E ++P+ VT+ +LS CA
Sbjct: 492 SGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCA 530
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 20/223 (8%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIP 84
R LT + + +IH F D + S L+ C + Y++K+F ++
Sbjct: 426 RACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKC-----RDMGYSKKVFLRLS 480
Query: 85 QPNLYTWNTLIRAYS---SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
Q +L +WN LI Y+ +DE +++F +QL PN T+ ++ A
Sbjct: 481 QKDLVSWNALISGYAQDECADEALKAFRD-MQL---EEIRPNTVTIACILSVCAHLSVMT 536
Query: 142 VGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV 196
+ + +HG +++SNSLI YA CGD+ + F + +++ VSWNS+I G
Sbjct: 537 LCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMG 596
Query: 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++ I L+ +M +KPD VT +LSAC+ ++ G
Sbjct: 597 MHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEG 639
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 19/205 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQI-----PQPNLYTW 91
+ IH ++ + + Y S L + C S++ A +F+ I + N W
Sbjct: 231 REIHGVVVKSGLDVEEYLVSSLIEMYMKCG-----SIKNAENIFNSILDKDSVRRNAVIW 285
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
N +I Y S+ Q+ ++F++++ P+ T+ + + + G+ IHG+
Sbjct: 286 NVMISGYVSNGCFSQALLLFIKMMVWGIK-PDYSTMVSLFSLCSESLDIAFGKQIHGLIF 344
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
++++ + +L+ Y CGD+ +F +++ W+++IS + G KA+E
Sbjct: 345 KFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALE 404
Query: 207 LYREMEVENVKPDEVTMVVVLSACA 231
L+ E ++E+ D +V VL AC+
Sbjct: 405 LFYEFKMEDGLADSGILVAVLRACS 429
>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 777
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 12/231 (5%)
Query: 34 TNQKQLK---RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
TN + LK RIH +L ++ D + + SL+ ARK FD + ++ +
Sbjct: 91 TNVRSLKYGKRIHDHILKSNCQPDLVLQNHILN--MYGKCGSLKDARKAFDTMQLRSVVS 148
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
W +I YS + + + ++++Q++ S YFP++ T +IKA +G +HG
Sbjct: 149 WTIMISGYSQNGQENDAIIMYIQML-RSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHV 207
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
++ L+ N+LI Y G +A A VF MI KD++SW SMI+GF + G+ +A+
Sbjct: 208 IKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEAL 267
Query: 206 ELYREMEVENV-KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
L+R+M + V +P+E V SAC EFG + K G+ ++
Sbjct: 268 YLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNV 318
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 25/227 (11%)
Query: 20 LTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKM 79
+T+N G Q H + + + L ++ A S ++T C S+L A +
Sbjct: 397 MTLNQGMQIHSYII--KMGLDKVAAVC---------NSLLTMYTKC-----SNLHDAFNV 440
Query: 80 FDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138
F I + NL +WN ++ A S +P ++F +F +L+ S P+ T+ ++ A V
Sbjct: 441 FKDISENGNLVSWNAILSACSQHKQPGEAFRLF-KLMLFSENKPDNITITTILGTCAELV 499
Query: 139 QFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
VG +H G+ D + +SN LI YA CG L A VF D+VSW+S+I
Sbjct: 500 SLEVGNQVHCFSVKSGLVVD-VSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLI 558
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G+ + G ++A+ L+R M V+P+EVT + VLSAC+ +E G
Sbjct: 559 VGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEG 605
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 12/209 (5%)
Query: 58 ASKLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
+F C+L + F L A++ F QI P+L +WN +I A ++SD ++ F Q
Sbjct: 315 GRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALANSDVN-EAIYFFCQ 373
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG----MFEDDLV-ISNSLIHFYAVCG 168
+++ P++ T ++ A P+ G IH M D + + NSL+ Y C
Sbjct: 374 MIHMG-LMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCS 432
Query: 169 DLAMAYCVFVMIGKK-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
+L A+ VF I + ++VSWN+++S + +A L++ M KPD +T+ +L
Sbjct: 433 NLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTIL 492
Query: 228 SACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
CA+ LE G V K+G+ +D++
Sbjct: 493 GTCAELVSLEVGNQVHCFSVKSGLVVDVS 521
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 130 VIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+I A + G+ IH + DLV+ N +++ Y CG L A F + +
Sbjct: 86 LILACTNVRSLKYGKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRS 145
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VVSW MISG+ + G AI +Y +M PD++T ++ AC D++ G +
Sbjct: 146 VVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHG 205
Query: 245 HIEKNG 250
H+ K+G
Sbjct: 206 HVIKSG 211
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 40/246 (16%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL--EYARKMFDQIPQPNLYTWNTLI 95
Q+K+ HA++L D S L A+S+ SSL +YA +++ I P ++ N +I
Sbjct: 46 QIKQAHARILVLGLANDGRITSHLLAFLAISS-SSLPSDYALSIYNSISHPTVFATNNMI 104
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
R + D P S ++ + + PN+ TL FV++A + R G + F
Sbjct: 105 RCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGF 164
Query: 151 EDDLVISNSLIHFYAVC--------------------------------GDLAMAYCVFV 178
D+ + N+LIH Y C G +++A +FV
Sbjct: 165 VKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFV 224
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
+ +KDV+SW ++ISG V+ G EKA++ ++E+ + ++P+E +V +L+A A+ LE+
Sbjct: 225 EMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEY 284
Query: 239 GIWVSS 244
G + S
Sbjct: 285 GKRIHS 290
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+ A+K+F ++P+ ++ +W T+I + E ++ + + + + PNE L
Sbjct: 213 LGQISVAQKLFVEMPEKDVISWGTIISGCVQNGE-LEKALDYFKELGEQKLRPNEAILVS 271
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
++ AAA+ G+ IH + F + +L+ YA CG + + +F + +KD
Sbjct: 272 LLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKD 331
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
SWN MI G G ++A+ L+ + + P VT + VL+AC++
Sbjct: 332 KWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSR 379
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 152 DDLVISNSLIHFYAVCG-----DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+D I++ L+ F A+ D A++ ++ I V + N+MI FV+G +I
Sbjct: 61 NDGRITSHLLAFLAISSSSLPSDYALS--IYNSISHPTVFATNNMIRCFVKGDLPRHSIS 118
Query: 207 LYREMEVENVK-PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
LY M V P++ T+ VL AC+ + G V +H+ K G D+
Sbjct: 119 LYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDV 168
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L ARK+F+++P+ N+ +W T+I E ++ IF +++ + PN+ T V
Sbjct: 284 GDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSV 343
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKK 183
+ A + GQ +H + ++D + ++LI+ Y+ CG+L A +F M ++
Sbjct: 344 LGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQR 403
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
D+VSWN +I+ + G+ ++AI ++EM KPD+VT V +LSAC+ +E G+
Sbjct: 404 DLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGL 460
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 12/195 (6%)
Query: 67 LSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT 126
L+ +E AR++FD++P+ ++ +W +I S + ++ ++F ++ P
Sbjct: 187 LAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRM-------PERNV 239
Query: 127 LPFVIKAAARPVQFRVGQAI---HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
+ + R+ +A+ M E DL N++I GDL A +F + KK
Sbjct: 240 VSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKK 299
Query: 184 DVVSWNSMISGFVEGGFFEKAIELY-REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+V+SW +MI+G V+ G E+A++++ R + KP++ T V VL AC+ L G V
Sbjct: 300 NVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQV 359
Query: 243 SSHIEKNGIKMDLTF 257
I K + D TF
Sbjct: 360 HQIISKT-VYQDSTF 373
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 32/205 (15%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL------VYNS----------- 118
A K+F+++P N+ +WNT+I Y+ + + +F ++ +N+
Sbjct: 134 AEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRI 193
Query: 119 -------PYFPNEFTLPFVIKAAARPVQFRVGQA---IHGMFEDDLVISNSLIHFYAVCG 168
P + + A R+ +A M E ++V N++I YA
Sbjct: 194 EEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNL 253
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228
L A +F + ++D+ SWN+MI+G ++ G +A +L+ EM +NV ++ +++
Sbjct: 254 RLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNV----ISWTTMIT 309
Query: 229 ACAKKRDLEFGIWV-SSHIEKNGIK 252
C ++ + E + + S + NG K
Sbjct: 310 GCVQEGESEEALKIFSRMLSTNGAK 334
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 50 DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFM 109
DF D A + LS + AR++FD++ +P++ TW T+I Y ++
Sbjct: 45 DFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARR 104
Query: 110 IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVIS-NSLIHFYAVCG 168
+F ++ N T ++ R + + + + V+S N++I YA G
Sbjct: 105 LFDRV----DAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNG 160
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+ A +F + +++VVSWN+++S + G E+A L+ M +V
Sbjct: 161 RIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDV 208
>gi|356495756|ref|XP_003516739.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71420-like [Glycine max]
Length = 782
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 95/169 (56%), Gaps = 10/169 (5%)
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
R D Q ++ +W LI ++ D P Q+F++F QL + Y P+ +T +KA A
Sbjct: 364 RIFHDTSSQLDIVSWTALISVFAERD-PEQAFLLFCQL-HRQSYLPDWYTFSIALKACAY 421
Query: 137 PVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
V + AIH F++D V+ N+L+H YA CG LA++ VF +G D+VSWNSM
Sbjct: 422 FVTEQHAMAIHSQVIKKGFQEDTVLCNALMHAYARCGSLALSEQVFNEMGCHDLVSWNSM 481
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ + G + A+EL+++M NV PD T V +LSAC+ ++ G+
Sbjct: 482 LKSYAIHGQAKDALELFQQM---NVCPDSATFVALLSACSHVGLVDEGV 527
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 16/170 (9%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L YAR +FDQ+ N+ +W LI ++ S + F +F L+ + + PNEF ++
Sbjct: 143 LAYARYVFDQMSHRNIVSWTALISGHAQSGLVRECFSLFSGLL--AHFRPNEFAFASLL- 199
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYA----VCGDLAM----AYCVFVM 179
+A + G +H + + ++ ++NSLI Y+ G A A+ +F
Sbjct: 200 SACEEHDIKCGMQVHAVALKISLDANVYVANSLITMYSKRSGFGGGYAQTPDDAWTMFKS 259
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
+ +++VSWNSMI+ F G +KAI L+ M + D T++ V S+
Sbjct: 260 MEFRNLVSWNSMIAXFQLRGLGDKAICLFAHMYCNGIGFDRATLLSVFSS 309
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
++D+ ++N +I+ Y CG LA A VF + +++VSW ++ISG + G + L+
Sbjct: 124 QNDVFLTNHIINMYCKCGHLAYARYVFDQMSHRNIVSWTALISGHAQSGLVRECFSLFSG 183
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+ + + +P+E +LSAC ++ D++ G+ V
Sbjct: 184 L-LAHFRPNEFAFASLLSAC-EEHDIKCGMQV 213
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 22/234 (9%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARK------MFDQIPQPNLYTWNTL 94
++HA L + Y A+ L T + + YA+ MF + NL +WN++
Sbjct: 212 QVHAVALKISLDANVYVANSLITMYSKRSGFGGGYAQTPDDAWTMFKSMEFRNLVSWNSM 271
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFP-----------NEFTLPFVIKAAARPV-QFRV 142
I + ++ +F + N F NE VI R Q
Sbjct: 272 IAXFQLRGLGDKAICLFAHMYCNGIGFDRATLLSVFSSLNECGAFDVINTYLRKCFQLHC 331
Query: 143 GQAIHGMFEDDLVISNSLIHFYA-VCGDLAMAYCVFVMIGKK-DVVSWNSMISGFVEGGF 200
G+ + V++ +LI YA + G ++ Y +F + D+VSW ++IS F E
Sbjct: 332 LTIKSGLISEIEVVT-ALIKSYANLGGHISDCYRIFHDTSSQLDIVSWTALISVFAERDP 390
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E+A L+ ++ ++ PD T + L ACA + + + S + K G + D
Sbjct: 391 -EQAFLLFCQLHRQSYLPDWYTFSIALKACAYFVTEQHAMAIHSQVIKKGFQED 443
>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 783
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 7/196 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
A S L A K+F P N +WN LI Y S +++F +F ++ + PNE+
Sbjct: 68 AYSNSRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEM-QSDGIKPNEY 126
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF-VM 179
TL V++ V G+ IHG F+ D+ + N L+ YA C ++ A +F M
Sbjct: 127 TLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETM 186
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
G+K+ V+W SM++G+ + GF KAIE +R++ E + ++ T VL+ACA G
Sbjct: 187 EGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVG 246
Query: 240 IWVSSHIEKNGIKMDL 255
+ V I K+G K ++
Sbjct: 247 VQVHCCIVKSGFKTNI 262
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 108/216 (50%), Gaps = 9/216 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H ++ + F + Y S L A +E AR + + + ++ +WN++I
Sbjct: 248 QVHCCIVKSGFKTNIYVQSALIDMYA--KCREMESARALLEGMEVDDVVSWNSMIVGCVR 305
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA-AARPVQFRVGQAIHGM-----FEDDL 154
++ +F ++ + ++FT+P ++ A + ++ + H + +
Sbjct: 306 QGLIGEALSMFGRM-HERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKTGYATYK 364
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+++N+L+ YA G + A VF + +KDV+SW ++++G G +++A++L+ M V
Sbjct: 365 LVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVG 424
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ PD++ VLSA A+ LEFG V + K+G
Sbjct: 425 GITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSG 460
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ A K+F+ + + ++ +W L+ + + ++ +F + P++ V+
Sbjct: 380 MDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGG-ITPDKIVTASVLS 438
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A+A GQ +HG F L ++NSL+ Y CG L A +F + +D+++
Sbjct: 439 ASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLIT 498
Query: 188 WNSMISGFVEGGFFEKAIELYREME 212
W +I G+ + G E A + M
Sbjct: 499 WTCLIVGYAKNGLLEDAQRYFDSMR 523
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 144 QAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
Q M E D N++I Y+ L+ A +F K+ +SWN++ISG+ + G +
Sbjct: 49 QMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVE 108
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
A L+ EM+ + +KP+E T+ VL C L G + H K G +D+
Sbjct: 109 AFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDV 160
>gi|225451344|ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
[Vitis vinifera]
gi|298204853|emb|CBI34160.3| unnamed protein product [Vitis vinifera]
Length = 471
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 20/232 (8%)
Query: 31 HFLTNQ-KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
HF N +K++HA +++ P A + CA FSS YA F + PNL+
Sbjct: 19 HFKPNSIHHIKQLHAHLITNAVSSPPLLAKLIHHYCA---FSSPHYAYTFFIHLRSPNLF 75
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+NTLI+ P S ++F V ++FT F + A AR G+ IH
Sbjct: 76 LFNTLIKCL----PPSSSILVFADWVSREALVFDDFTYIFALGACARSPSLWEGRQIHAR 131
Query: 150 FEDDLVISNSL-----IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG-----G 199
V SN L IHFYA D+A+A VF + K+ V+WN+MI+G+
Sbjct: 132 ILKQGVWSNVLVQTTAIHFYANNNDVALARLVFDEMRKRSSVTWNAMITGYCSQRGKVVC 191
Query: 200 FFEKAIELYREMEVE--NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+ A+ L+R M V+ VKP + TMV VLSA ++ LE G+ V +IEK
Sbjct: 192 YARDALVLFRAMLVDACGVKPTDTTMVCVLSAASQLGVLETGVGVHGYIEKT 243
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPI-----QSFMIFLQLVYNSPYF-PNEFTLPF 129
AR +FD++ + + TWN +I Y S + + ++F ++ ++ P + T+
Sbjct: 160 ARLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYARDALVLFRAMLVDACGVKPTDTTMVC 219
Query: 130 VIKAAARPVQFRVGQAIHGMFE-------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ AA++ G +HG E +D+ + L+ Y+ CG L A C+F + +
Sbjct: 220 VLSAASQLGVLETGVGVHGYIEKTVLAPANDVFVGTGLVDMYSKCGCLGSALCIFWGMKE 279
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++V++W +MI+G G ++A+EL EM VKP+ VT + SAC +E G+
Sbjct: 280 RNVLTWTAMITGLARHGRGKEALELLDEMVAYGVKPNAVTFTSLFSACCHAGLVEEGL 337
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 137/288 (47%), Gaps = 51/288 (17%)
Query: 10 SIPRHPNPTTLTVNNGHQRHPHFLT------NQKQLKRIHAQMLSTDFFFDPYSASKLFT 63
S+ R PNP T +N P L+ + LK++HAQ+++ P+ S L +
Sbjct: 53 SMSRTPNPLTNPPSN-----PQILSLFNPCKTLRHLKQVHAQIIT--HHNSPFQLSALAS 105
Query: 64 PCALSTFSS-LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP 122
ALS F + L YA+ +F + P +N+LIRA SSS P+++ ++ ++ S P
Sbjct: 106 LSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTML-QSGLKP 164
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVF 177
+ T PFVIKA G +H FE D I +SLIH YA DL A +F
Sbjct: 165 DHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLF 224
Query: 178 VMIGKKDVVSWNSMISGFVE-------------------------------GGFFEKAIE 206
+ +DVVSWN+MI G+V+ G +A+
Sbjct: 225 NLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALA 284
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
L+ +M VKP E T+V +LSACA L+ G+ + ++I N I+++
Sbjct: 285 LFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVN 332
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 19/196 (9%)
Query: 54 DPYSASKLFTPCALSTFSS-------------LEYARKMFDQIPQPNLYTWNTLIRAYSS 100
D +A +LF C+ S + +AR +FD++ ++ +WNT+I Y+
Sbjct: 216 DLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAI 275
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS- 159
+P ++ +F Q+ P E T+ ++ A A G +H D+ + NS
Sbjct: 276 CGKPNEALALFDQM-RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI 334
Query: 160 ----LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
L+ YA CG +++A VF + KDV++WN++I+G G ++A +L++EM+
Sbjct: 335 VGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAG 394
Query: 216 VKPDEVTMVVVLSACA 231
V+P+++T V +LSAC+
Sbjct: 395 VEPNDITFVAILSACS 410
>gi|242062828|ref|XP_002452703.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
gi|241932534|gb|EES05679.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
Length = 622
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQPNLYTWNTLIR 96
++++ HA+ + P A L CALS + +E A +F+ + +P + +NTL+R
Sbjct: 57 EVRKAHARHIKLGVDRCPRHARPLLAACALSGWPGGMELAASIFESLVEPEAFDYNTLMR 116
Query: 97 AY----SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
+ EP + +++ ++ + P+ +T PFV+KA A+ + G+ + E
Sbjct: 117 GHVGGGRGDREPAAALRLYVDML-EAGVGPDSYTFPFVLKACAQLASLQQGRQLQAHIEK 175
Query: 153 -----DLVISNSLIHFYAVCGDLAMAYCVF--VMIGKKDVVSWNSMISGFVEGGFFEKAI 205
D + NSLI FY CG+ AMA F V ++ SW+++++ + + G + + +
Sbjct: 176 LGLQHDEHVQNSLISFYGKCGEPAMARLAFDRVEDEERTTASWSALLAAYTKAGLWGECL 235
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E + M ++ +PDE +MV +SACA + G + + +N +++
Sbjct: 236 ESFGAMVLDGWRPDESSMVSAISACAHLGAFDVGRSIHCALLRNTARLN 284
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 76 ARKMFDQIPQPNLYT--WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
AR FD++ T W+ L+ AY+ + + F +V + + P+E ++ I A
Sbjct: 201 ARLAFDRVEDEERTTASWSALLAAYTKAGLWGECLESFGAMVLDG-WRPDESSMVSAISA 259
Query: 134 AARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A F VG++IH + ++ SL+ YA CG + A VF + K+ ++
Sbjct: 260 CAHLGAFDVGRSIHCALLRNTARLNTIMQTSLVDMYAKCGSIEKAAAVFDAMDDKNAWAY 319
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++M+SG G KA++++ M E PD V VL+AC++ LE G+
Sbjct: 320 SAMLSGLALHGDGRKALQVFDAMVREGHAPDAAAYVGVLNACSRAGLLEDGL 371
>gi|302141901|emb|CBI19104.3| unnamed protein product [Vitis vinifera]
Length = 457
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 5/190 (2%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F L ARK+FD++P+ N+ +W ++ YS ++ +F + N N T
Sbjct: 111 FGKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEALRLFDDCIENGVR-ANGKTFVC 169
Query: 130 VIKAAARPVQFRVGQAIHGMFEDD----LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
V+ ++ + F +G+ IH D L++ ++L+ FYA CGDL+ A+ F + ++DV
Sbjct: 170 VLNLCSKRLDFELGRQIHACIVKDNWRNLIVDSALVCFYAQCGDLSGAFHAFDQMPERDV 229
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V W +MI+ + G +A+ ++ +M P+E T+ VL AC +++ LEFG +
Sbjct: 230 VCWTTMITACSQQGRGTEALSMFSQMMFNTSSPNEFTVCSVLKACGEEKALEFGKQLHGA 289
Query: 246 IEKNGIKMDL 255
I K K D+
Sbjct: 290 IIKKMFKEDV 299
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C + L A FDQ+P+ ++ W T+I A S ++ +F Q+++N+ PNE
Sbjct: 206 CFYAQCGDLSGAFHAFDQMPERDVVCWTTMITACSQQGRGTEALSMFSQMMFNTSS-PNE 264
Query: 125 FTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
FT+ V+KA G+ +HG MF++D+ I SL+ YA CG++ + VF
Sbjct: 265 FTVCSVLKACGEEKALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDG 324
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ K++ V+W S+I+G+ G E+AI L+RE
Sbjct: 325 MKKRNTVTWTSIIAGYARNGQGEEAISLFRE 355
>gi|302766239|ref|XP_002966540.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
gi|300165960|gb|EFJ32567.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
Length = 630
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 15/228 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL----FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+R+H +L+T F L + C + SSL AR +FDQ+P+ ++ +W+ +I
Sbjct: 18 RRVHDHILATGHFLRSVHLGNLLIQMYRKCGGT--SSLADARAVFDQMPKKDVVSWSCII 75
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----F 150
AY + ++ +F ++ PNE + + A + +G AIH
Sbjct: 76 AAYGQAGHCREAINLFQRM----DVEPNEMVIVSTLAACSGAKDLALGMAIHARILSPDL 131
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ + +L++ YA CG + A VF I KDVVSW +MI+ F + G +A+E
Sbjct: 132 RKSVFVGTALLNMYAKCGAIEQARAVFDQIPHKDVVSWTAMITAFAQMGDCRQALETLEG 191
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
M V+P+ VT V ++AC+ + L+ G + + + G+ D+T +
Sbjct: 192 MIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGDITIQ 239
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 10/224 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IHA++LS D + + L A ++E AR +FDQIP ++ +W +I A++
Sbjct: 122 IHARILSPDLRKSVFVGTALLNMYA--KCGAIEQARAVFDQIPHKDVVSWTAMITAFAQM 179
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVI 156
+ Q+ L+ + + PN T I A + G+ IH D D+ I
Sbjct: 180 GDCRQALET-LEGMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGDITI 238
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+L+ YA A VF + ++ VSWNSMI+ F A+ L+ M +E +
Sbjct: 239 QNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAAFAASAQSCAAMGLFHGMNLEGI 298
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM--DLTFE 258
KPD+V+ + VLSAC+ R L + S +E + DL+ E
Sbjct: 299 KPDDVSFLGVLSACSSTRCLRSCKRIHSQLELAAVHSPPDLSVE 342
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 17/208 (8%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ KRIH+Q+ P + + A + LE A ++F +IP N+ +W ++
Sbjct: 319 RSCKRIHSQLELAAVHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLT 378
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA--------ARPVQFRVGQAIHG 148
AY+ ++ ++ ++V S P+ L VI A AR + RV +
Sbjct: 379 AYTFHGNGSKALELYDKMVGQSIQ-PDSVVLLNVIYAGSLVGDVGLARKLHARVASS--- 434
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-----DVVSWNSMISGFVEGGFFEK 203
F + I N+LI+ Y CG L A VF I +K D V+W+S+++G+ G E
Sbjct: 435 SFMLKIQIQNALINMYTRCGSLEEARRVFDGIERKNLVARDTVTWSSLVAGYAHHGHAEY 494
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACA 231
AI LYR+M +E V+PD VT V +L++C+
Sbjct: 495 AILLYRDMHLEGVQPDSVTYVSILNSCS 522
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 14/236 (5%)
Query: 1 METLSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASK 60
+ETL +I PNP T FL + +IHA ++ D +
Sbjct: 186 LETLE-GMIQARVQPNPVTFVAAITACSSREFLDRGR---KIHAAVIDLGLHGDITIQNA 241
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L + A SS E A +F ++ N +WN++I A+++S + + +F +
Sbjct: 242 LVSMYAKG--SSAEEALSVFQRMEDRNRVSWNSMIAAFAASAQSCAAMGLFHGMNLEG-I 298
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-------DDLVISNSLIHFYAVCGDLAMA 173
P++ + V+ A + R + IH E DL + NSL+ YA CGDL A
Sbjct: 299 KPDDVSFLGVLSACSSTRCLRSCKRIHSQLELAAVHSPPDLSVENSLVTAYAKCGDLEAA 358
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
+F I K+VVSW +M++ + G KA+ELY +M ++++PD V ++ V+ A
Sbjct: 359 ERIFQRIPGKNVVSWTAMLTAYTFHGNGSKALELYDKMVGQSIQPDSVVLLNVIYA 414
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 94/169 (55%), Gaps = 5/169 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARK+FD++ + +WN +I Y + + + IF ++ + P+ T V++A A
Sbjct: 396 ARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACA 455
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ +A+H E ++V++N+LI+ YA CG L A +F +K VVSW +
Sbjct: 456 SLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTA 515
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
M++ F + G + +A++L++EM++E VKPD+VT +L C LE G
Sbjct: 516 MVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQG 564
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 7/194 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F S+ A++MF + + +WN +I A+S S + + IF ++ + PN T
Sbjct: 153 ARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVK--PNSTTY 210
Query: 128 PFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
VI + P G+ IH F+ DLV++ +LI+ Y CG A VF + K
Sbjct: 211 INVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKK 270
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+D+VSWN MI +V G F +A+ELY+++++E K + T V +L AC+ + L G V
Sbjct: 271 RDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLV 330
Query: 243 SSHIEKNGIKMDLT 256
SHI + G+ ++
Sbjct: 331 HSHILERGLDSEVA 344
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 109/235 (46%), Gaps = 49/235 (20%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
++IHA++++ F D A+ L + C S AR++FD++ + ++ +WN +I
Sbjct: 227 RKIHAEIVANGFDTDLVVATALINMYGKCGSS-----HEAREVFDKMKKRDMVSWNVMIG 281
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + + ++ ++ +L + + T ++ A + G+ +H +
Sbjct: 282 CYVLNGDFHEALELYQKLDMEG-FKRTKATFVSILGACSSVKALAQGRLVHSHILERGLD 340
Query: 152 DDLVISNSLIHFYAVCGDL--------------AMAYC--------------------VF 177
++ ++ +L++ YA CG L A+A+ VF
Sbjct: 341 SEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVF 400
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME-VENVKPDEVTMVVVLSACA 231
+G +D +SWN+MI+ +V+ G A++++REM +KPD VT + VL ACA
Sbjct: 401 DRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACA 455
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ T V+ + + G+A+H FE D ++ N+LI Y C L A V
Sbjct: 5 PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64
Query: 177 FVMIG--KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F + +++VVSWN+MI+ + + G +A+ LY M ++ + D VT V VL AC+
Sbjct: 65 FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 105/223 (47%), Gaps = 14/223 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP--QPNLYTWNTLIRA 97
+ +H ++ + F D + L + SL AR +F+ + Q N+ +WN +I A
Sbjct: 27 RALHERIRCSRFERDTMVGNALIS--MYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAA 84
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDL-- 154
Y+ + ++ +++ ++ + T V+ A + Q G+ IH +F L
Sbjct: 85 YAQNGHSTEALVLYWRMNLQG-LGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDS 140
Query: 155 --VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++N+L+ YA G + A +F + +D SWN++I + G + A+ +++EM+
Sbjct: 141 FQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK 200
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+VKP+ T + V+S + L G + + I NG DL
Sbjct: 201 C-DVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDL 242
>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
Length = 691
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 9/205 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQ-IPQPNLYTWNTLIRAYS 99
++HA ++T D + + L F ++ A+++FD+ + N +WN +I AY
Sbjct: 121 QVHALAVATRLIQDVFVTNALVA--MYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYV 178
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+D + +F ++V++ PNEF V+ A + G+ +HGM ++ D+
Sbjct: 179 KNDRCRDAVGVFREMVWSGER-PNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDKDV 237
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+N+L+ Y+ GD+ MA VF I DVVSWN++I+G V G +A+EL +M+
Sbjct: 238 FTANALVDMYSKLGDIEMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLLQMKPL 297
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
V P+ T+ VL ACA G
Sbjct: 298 GVVPNVFTLSSVLKACAGAGAFNLG 322
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 8/196 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++HA D + + L + L+YA K+F++ ++ + +++ A S
Sbjct: 426 KQVHALAEKIGLLSDSHVVNGLID--SYWKCGRLDYAIKVFEESCSDDIISSTSMMTALS 483
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDL 154
D + +F+Q++ P+ F L ++ A A + G+ +H F D+
Sbjct: 484 QCDHGEDAIKLFVQMLRKG-LEPDSFVLSSLLNACASLSAYEQGKQVHAHLIKRQFTSDV 542
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
N+L++ YA CG + A F + +K VVSW++MI G + G ++A+EL+ M E
Sbjct: 543 FAGNALVYTYAKCGSIEDADMAFSGLPEKGVVSWSAMIGGLAQHGHGKRALELFHRMLDE 602
Query: 215 NVKPDEVTMVVVLSAC 230
V P+ +T+ VLSAC
Sbjct: 603 GVAPNNITLTSVLSAC 618
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIKAA 134
AR +FD+IP P +W++L+ AYS++ P + F + P NE+ LP V+K A
Sbjct: 56 ARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALWAFRSM--RGRGVPCNEYALPIVLKCA 113
Query: 135 ARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM-IGKKDVVSW 188
R G +H + D+ ++N+L+ Y G + A +F G+++ VSW
Sbjct: 114 P---DVRFGAQVHALAVATRLIQDVFVTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSW 170
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
N MIS +V+ A+ ++REM +P+E V++AC RD E G V + +
Sbjct: 171 NGMISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVR 230
Query: 249 NGIKMDL 255
G D+
Sbjct: 231 TGYDKDV 237
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 14/224 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H ++ T + D ++A+ L S +E A +F++IP ++ +WN LI
Sbjct: 222 RQVHGMVVRTGYDKDVFTANALVD--MYSKLGDIEMAAVVFEKIPAADVVSWNALIAGCV 279
Query: 100 SSDEPIQSFMIFLQLVYNSPY--FPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----ED 152
+ ++ + LQ+ P PN FTL V+KA A F +G+ IHG +
Sbjct: 280 THGHDHRALELLLQM---KPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKADADS 336
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D ++ L+ YA G L A VF + ++D++ WN++ISG G + + L+ M
Sbjct: 337 DEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMR 396
Query: 213 VENVKPD--EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E + D T+ VL + A + V + EK G+ D
Sbjct: 397 KEGLDLDVNRTTLAAVLKSTASLEAICHTKQVHALAEKIGLLSD 440
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 100/223 (44%), Gaps = 10/223 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH M+ D D + A L A F L+ ARK+FD +P+ +L WN LI S
Sbjct: 323 RQIHGFMIKADADSDEFVAVGLVDMYAKDGF--LDDARKVFDFMPRRDLILWNALISGCS 380
Query: 100 SSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIKAAARPVQFRVGQAIH------GMFED 152
+ +F ++ N TL V+K+ A + +H G+ D
Sbjct: 381 HDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQVHALAEKIGLLSD 440
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
V+ N LI Y CG L A VF D++S SM++ + E AI+L+ +M
Sbjct: 441 SHVV-NGLIDSYWKCGRLDYAIKVFEESCSDDIISSTSMMTALSQCDHGEDAIKLFVQML 499
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ ++PD + +L+ACA E G V +H+ K D+
Sbjct: 500 RKGLEPDSFVLSSLLNACASLSAYEQGKQVHAHLIKRQFTSDV 542
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
SN L+ FY+ C + A VF I VSW+S+++ + G A+ +R M V
Sbjct: 40 SNHLLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGRGV 99
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWV 242
+E + +VL CA D+ FG V
Sbjct: 100 PCNEYALPIVLK-CAP--DVRFGAQV 122
>gi|326499065|dbj|BAK06023.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 572
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 6/224 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQ R AQ+L ++ S + L A ++F +P N +W TLI
Sbjct: 190 KQSIRGGAQLLMVKIGYELSVLSGTSLIILYARCGQLGNACRVFQDMPIKNTVSWTTLIS 249
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y+ D ++ + QL+ S PN+ T P + +G++IHG+ F+
Sbjct: 250 GYAR-DNQVEPCLRVFQLMRQSVCRPNDITFPTIFSVCTNHALLALGKSIHGLELRMGFD 308
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ +SN+LI Y CG++ A +F I KD+VSWNSMI G+ + G E + L +EM
Sbjct: 309 LCVHVSNALISMYVKCGNIIEAQSIFESIVCKDLVSWNSMIFGYSQHGLVECCLSLLKEM 368
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ E + PD ++ + +LS+C +E G + + K GI+ +L
Sbjct: 369 DEEQIVPDVISFLGILSSCRHACLVEEGRCCFNAMIKLGIEPEL 412
>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 113/209 (54%), Gaps = 16/209 (7%)
Query: 41 RIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
RIH+ + D D + L + C L + A K+F ++P+ +L +WN LI
Sbjct: 81 RIHSFIRGLDLINDVRVGTALVDFYCKCGL-----VAEASKVFVEMPERDLVSWNALISG 135
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG------MFE 151
Y ++ ++F+++ + PN T+ ++ A ++ R+GQ IHG +F+
Sbjct: 136 YVGCLCYKEAVLLFVEM-KKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFD 194
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + +L+ FY D +++ VF ++ +++VSWN++I+GF+ G KA++LY M
Sbjct: 195 MDAYVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSM 253
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+E +K D VTM+VV+ ACA+ L G+
Sbjct: 254 LIEGIKFDAVTMLVVIQACAEYGCLRLGM 282
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 9/163 (5%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A MF + PQ +L +WN+LI +Y +D ++ ++F ++ S PN T+ ++ +
Sbjct: 519 ATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMI--SELEPNSVTIINILTSCT 576
Query: 136 RPVQFRVGQAIHGM-------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ +GQ +H E D ++N+ I YA CG L A +F + + +VSW
Sbjct: 577 QLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSW 636
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
N+MI+G+ G A + +M + KP+ V+ VLSAC+
Sbjct: 637 NAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACS 679
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 91/168 (54%), Gaps = 10/168 (5%)
Query: 91 WNTLIRAYSS--SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
WN++I+ ++ +D I S ++ + P+ T+P V+KA R G IH
Sbjct: 28 WNSIIKHHTKLKNDHAILSTYTQMESL---GITPDSATMPLVLKACGRLNAIGNGVRIHS 84
Query: 149 MFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
+D+ + +L+ FY CG +A A VFV + ++D+VSWN++ISG+V +++
Sbjct: 85 FIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKE 144
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
A+ L+ EM+ + P+ T+V +L AC + +L G + + +NG+
Sbjct: 145 AVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGL 192
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
+ ++F + N+ +WN +I + + + ++ ++ ++ F + T+ VI+A A
Sbjct: 215 SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKF-DAVTMLVVIQACA 273
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R+G +H + +DL I N+L++ Y+ G L ++ +F + D WNS
Sbjct: 274 EYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNS 333
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE-FGIWVSSHIEKN 249
MIS ++ GF +AI L+ +M +E +K D T+ ++LS C D +G + +H K+
Sbjct: 334 MISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKS 393
Query: 250 GIKMD 254
GI++D
Sbjct: 394 GIELD 398
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 112/221 (50%), Gaps = 9/221 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +HA + + D Y + L + + + A+ +F+++ ++ +WNT+I A++
Sbjct: 384 RGLHAHAMKSGIELDAYLGNALLS--MYVKHNQITAAQYVFEKMRGLDVISWNTMISAFA 441
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S ++F +FL + + F N +T+ ++ G++IHG E +
Sbjct: 442 QSMFRAKAFELFLMMCESEIKF-NSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINT 500
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ SL Y CGD A +F ++D+VSWNS+IS +++ KA+ L+ M +
Sbjct: 501 SLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHM-IS 559
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++P+ VT++ +L++C + L G + ++ + + +++
Sbjct: 560 ELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEM 600
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+YA K+F + ++ +WN +I Y + + F Q++ + + PN + V+
Sbjct: 618 LQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQML-DDGFKPNNVSFASVLS 676
Query: 133 AAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
A + G+ L + +S++ + + L C+ ++G+
Sbjct: 677 ACSHS----------GLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGR---------- 716
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
GG F +AI M +E PD +LS+C K +
Sbjct: 717 -----GGHFSEAIAFINSMPIE---PDASIWRALLSSCQIKSN 751
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 22/222 (9%)
Query: 24 NGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI 83
NG + H H L + + H +++T D Y+ F + A ++FDQ+
Sbjct: 201 NGREIHGHILRHGFE---GHVHIMTT--LLDMYA-----------RFGCVLNASRVFDQM 244
Query: 84 PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY-NSPYFPNEFTLPFVIKAAARPVQFRV 142
P N+ +W+ +I YS + +P+++ +F +++ N PN T+ V++A A
Sbjct: 245 PVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQ 304
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ +HG + L + ++L+ YA CG+L + + VF + K+DVVSWNS+IS +
Sbjct: 305 GKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGI 364
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
GF KAI++++EM + + P ++ V VL AC+ +E G
Sbjct: 365 HGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEG 406
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 16/222 (7%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ DP+ A+KL S S++ ARK+FD+ + +Y WN L RA + +
Sbjct: 100 LHRHLIHDGSDQDPFLATKLIN--MYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLA 157
Query: 102 DEPIQSFMIFLQLVYNSPYFPNE-FTLPFVIKAAARPVQFRV----GQAIHGM-----FE 151
+ ++ ++ N P++ FT +V+KA F G+ IHG FE
Sbjct: 158 GYGREVLDLYRRM--NRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFE 215
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ I +L+ YA G + A VF + K+VVSW++MI+ + + G +A+EL+R+M
Sbjct: 216 GHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKM 275
Query: 212 EVEN--VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
+EN + P+ VTMV VL ACA LE G + +I + G+
Sbjct: 276 MLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGL 317
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 10/148 (6%)
Query: 112 LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-----QAIHGMFEDDLVISNSLIHFYAV 166
LQ++ P P + T +I + R G IH + D ++ LI+ Y+
Sbjct: 67 LQVLSQEPN-PTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSE 125
Query: 167 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
+ A VF K+ + WN++ G+ + ++LYR M V D T V
Sbjct: 126 LDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYV 185
Query: 227 LSACAKKRD----LEFGIWVSSHIEKNG 250
L AC L G + HI ++G
Sbjct: 186 LKACVASEAFVSLLLNGREIHGHILRHG 213
>gi|302818269|ref|XP_002990808.1| hypothetical protein SELMODRAFT_132472 [Selaginella moellendorffii]
gi|300141369|gb|EFJ08081.1| hypothetical protein SELMODRAFT_132472 [Selaginella moellendorffii]
Length = 484
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SL A F +I PNLY+W LI AY+ + ++ + F ++ N T
Sbjct: 6 GSLPEAWDCFARIALPNLYSWTILITAYAQNGHLDEALVFFSKMALEGIK-ANAITFVVA 64
Query: 131 IKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
I A A R G+A+H G F+ LV NSLIH Y C DL A F + KKD
Sbjct: 65 INACAMLGDPRRGKALHDFLVPCGFFDSSLV-GNSLIHMYGKCRDLDAAKSAFNELKKKD 123
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
VV+WNS+IS + + G ++A+ELY +M+ PD++T V + ACA +DLE
Sbjct: 124 VVTWNSIISAYAQNGRGKEALELYNDMD---WTPDKITYVGAIEACASSQDLE 173
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 117/227 (51%), Gaps = 19/227 (8%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + ++ K +H ++ FF + L + C L+ A+ F+++ + ++
Sbjct: 71 LGDPRRGKALHDFLVPCGFFDSSLVGNSLIHMYGKC-----RDLDAAKSAFNELKKKDVV 125
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TWN++I AY+ + ++ L+L + + P++ T I+A A Q +
Sbjct: 126 TWNSIISAYAQNGRGKEA----LELYNDMDWTPDKITYVGAIEACASS------QDLEQA 175
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ D+V+ N+L+ YA CG A A VF + +++V++WN ++ + G F +A+ L++
Sbjct: 176 VQTDVVVCNTLLSMYAKCGASAHARAVFESMSRRNVITWNGIMKAYALQGEFGEALALFQ 235
Query: 210 EMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+E E VKPD VT VV + CA K LE G + + + +G+ +DL
Sbjct: 236 RLEAEKEVKPDRVTFVVAIDCCACKPCLEEGRRIHASVVASGLDLDL 282
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++ C S +AR +F+ + + N+ TWN +++AY+ E ++ +F +L
Sbjct: 189 MYAKCGASA-----HARAVFESMSRRNVITWNGIMKAYALQGEFGEALALFQRLEAEKEV 243
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
P+ T I A G+ IH + DL+I N+L++ Y CG + A
Sbjct: 244 KPDRVTFVVAIDCCACKPCLEEGRRIHASVVASGLDLDLIIGNTLVNMYGKCGQVGTARG 303
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+F + +DVV+W+S+++ + G + +EL+R M+ + +P+EVT + VL AC+
Sbjct: 304 LFDKMVVRDVVTWSSLLATYASNGHGMEGLELFRLMQQDYTEPNEVTFLGVLFACS 359
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
Y CG L A+ F I ++ SW +I+ + + G ++A+ + +M +E +K + +T
Sbjct: 2 YGKCGSLPEAWDCFARIALPNLYSWTILITAYAQNGHLDEALVFFSKMALEGIKANAITF 61
Query: 224 VVVLSACAKKRD 235
VV ++ACA D
Sbjct: 62 VVAINACAMLGD 73
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 37/204 (18%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+RIHA ++++ D + L + C + AR +FD++ ++ TW++L+
Sbjct: 267 RRIHASVVASGLDLDLIIGNTLVNMYGKCG-----QVGTARGLFDKMVVRDVVTWSSLLA 321
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
Y+S+ ++ +F +L+ PNE T V+ A + R ++ + D +
Sbjct: 322 TYASNGHGMEGLELF-RLMQQDYTEPNEVTFLGVLFACSHLGFVRESKSYLFAMQRDYGL 380
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+ HF CV ++ + G ++A EL R + +
Sbjct: 381 TPGQEHFS----------CVIDLLARS---------------GRLDEAEELVRGLPFQ-- 413
Query: 217 KPDEVTMVVVLSACAKKRDLEFGI 240
PD V + +L AC + DL+ GI
Sbjct: 414 -PDNVIVTSLLGACTTQGDLKRGI 436
>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 107/222 (48%), Gaps = 7/222 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++HA ++ + F S + L + + F +E+A +F +IP +L +W T+I Y
Sbjct: 280 RQLHAHVIKSWFGHHLTSQNALIS--MYTNFGQIEHASNVFTRIPTKDLISWGTMITGYI 337
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+++ +F L+ Y PNEF V A + ++ G+ +HGM ++
Sbjct: 338 QLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNV 397
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
SL YA G L A F I D+VSWN++I+ F + G +AI+ +R+M
Sbjct: 398 FAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHI 457
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ PD +T + +L C L G + S+I K G ++T
Sbjct: 458 GLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEIT 499
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Query: 40 KRIHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+IH +L +++ ++ C S++ ARK+FD + PN+ +W ++I
Sbjct: 179 KKIHDHVLKSNYQPSIILQNHMINMYGKCG-----SMKDARKVFDTMQLPNVVSWTSMIS 233
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFE 151
YS + + + ++++Q+ S FP++ T VIKA +G+ +H F
Sbjct: 234 GYSQNGQANDAIIMYIQMT-RSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFG 292
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
L N+LI Y G + A VF I KD++SW +MI+G+++ G+ +A+ L+R++
Sbjct: 293 HHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDL 352
Query: 212 EVENV-KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ +P+E V SAC+ +LE+G V K G++ ++
Sbjct: 353 LRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNV 397
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 11/206 (5%)
Query: 61 LFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
+F C+L + F L A+ F QI P++ +WN +I A++ + + ++ F Q+++
Sbjct: 397 VFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIH 456
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLA 171
P+ T ++ PV+ G+ IH F+ ++ + NSL+ Y C L
Sbjct: 457 -IGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLH 515
Query: 172 MAYCVFVMIGKK-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
A VF I + ++VSWN+++S ++ + LY+EM KPD +T+ +L C
Sbjct: 516 DALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTC 575
Query: 231 AKKRDLEFGIWVSSHIEKNGIKMDLT 256
A+ L G V + K+G+ +D++
Sbjct: 576 AELTSLGVGNQVHCYSIKSGLILDVS 601
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 11/209 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLIR 96
Q ++IH+ ++ F + + L T + S L A +F I + NL +WN ++
Sbjct: 481 QGRQIHSYIVKIGFDKEITVCNSLLT--MYTKCSHLHDALNVFRDISRNANLVSWNAILS 538
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMF 150
A + ++F ++ ++ + S P+ T+ ++ A VG +H G+
Sbjct: 539 ACLQKKQEGETFRLYKEMHF-SGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLI 597
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D + + N LI YA CG L A VF D+VSW+S+I G+ + G +A+ L+R
Sbjct: 598 LD-VSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRI 656
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFG 239
M V+P+EVT + LSAC+ +E G
Sbjct: 657 MTNLGVQPNEVTYLGALSACSHIGLVEEG 685
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 7/145 (4%)
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLA 171
NS + P+ +T + A R + + + IH ++ +++ N +I+ Y CG +
Sbjct: 154 NSHFEPSTYTSLVLACANFRSLDY--AKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMK 211
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A VF + +VVSW SMISG+ + G AI +Y +M PD++T V+ AC
Sbjct: 212 DARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACY 271
Query: 232 KKRDLEFGIWVSSHIEKNGIKMDLT 256
D++ G + +H+ K+ LT
Sbjct: 272 IAGDIDLGRQLHAHVIKSWFGHHLT 296
>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 594
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 11/207 (5%)
Query: 40 KRIHAQMLSTDFFFD-PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
K+IHA + D P S L C + A++ F ++ + NL TWNTLI Y
Sbjct: 231 KQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCD---AKRCFGELTEKNLITWNTLIAGY 287
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
SD +S +F Q+ + Y PN FT + A A GQ +HG F+ +
Sbjct: 288 ERSDSS-ESLSLFFQM-GSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKN 345
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + NSLI YA CG ++ ++ +F + +D+VSW +M+ G+ G+ ++A++L+ EM
Sbjct: 346 VALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQ 405
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGI 240
++PD + + VL C+ ++ G+
Sbjct: 406 SGIQPDRIVFMGVLCGCSHAGLVDKGL 432
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 9/234 (3%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS--LEYARKMFDQIPQP 86
HP L + L+ I L ++ F P S T S F A +F++IP+
Sbjct: 13 HPIPLIVRNSLQWISNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLFNEIPER 72
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
++ TW +I ++S + Q++ +F +++ S PN FT+ V+KA G
Sbjct: 73 DVVTWTAMIVGFTSCNHYHQAWTMFSEML-RSEVQPNAFTMSSVLKACKGMKALSCGALA 131
Query: 147 HGM-----FEDDLVISNSLIHFYAV-CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
H + + + + N+L+ YA C + A VF I K VSW ++I+GF G
Sbjct: 132 HSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGD 191
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ +R+M +E+V P+ + + ACA G + + + K G+ D
Sbjct: 192 GYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCD 245
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 38/222 (17%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E AR++FD +P+ N+ +WN+LI Y + ++ M+F++++ + + P+E TL V+ A
Sbjct: 203 EDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMA-AGFSPDEVTLSSVMSA 261
Query: 134 AARPVQFRVGQAIHG------MFEDDLVISNSLIHFYAVCGDLAMAYCVF---------- 177
A R G+ +H DD+V++N+L+ YA CG A C+F
Sbjct: 262 CAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVS 321
Query: 178 ---VMIG------------------KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
++ G +K+V++WN +I+ + + G E+AI L+ +++ +++
Sbjct: 322 ETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSI 381
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
P T VL+AC DL+ G H+ K G + D E
Sbjct: 382 WPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPE 423
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 13/193 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+++E A+ +F Q+ + N+ WN LI AY+ + E ++ +F+QL +S +P +T V
Sbjct: 333 ANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDS-IWPTHYTYGNV 391
Query: 131 IKAAARPVQFRVGQAIHGMF-----------EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
+ A ++GQ H E D+ + NSL+ Y G + VF
Sbjct: 392 LNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER 451
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ +D VSWN+MI G+ + G + A+ L+ M N PD VTM+ VLSAC ++ G
Sbjct: 452 MAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEG 511
Query: 240 -IWVSSHIEKNGI 251
+ S E +GI
Sbjct: 512 RRYFHSMTEDHGI 524
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 113/254 (44%), Gaps = 45/254 (17%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL---EYARKMFDQIPQPNLYTW 91
N + HA++L + P + +ST++ L AR++FD+IP N +++
Sbjct: 32 NLSGARAAHARILKS-----PVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSY 86
Query: 92 NTLIRAYSSSDEPIQSFMIFL------QLVYNS--------------------------P 119
N L+ AY+ P ++ +F Q YN+
Sbjct: 87 NALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADD 146
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAY 174
+ N ++ + A A R G+ +HG+ DD+ I ++L+ YA C A
Sbjct: 147 FVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDAR 206
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
VF + +++VVSWNS+I+ + + G +A+ L+ EM PDEVT+ V+SACA
Sbjct: 207 RVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLA 266
Query: 235 DLEFGIWVSSHIEK 248
G V +H+ K
Sbjct: 267 ADREGRQVHAHMVK 280
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 35/212 (16%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLI 95
++ H +L F FD S +F +L S++ K+F+++ + +WN +I
Sbjct: 405 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMI 464
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA-IHGMFEDDL 154
Y+ + + +F +++ ++ P+ T+ V+ A G+ H M ED
Sbjct: 465 VGYAQNGRAKDALHLFERMLCSNEN-PDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDH- 522
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I+ S H+ C+ ++G+ G ++A EL +M +E
Sbjct: 523 GITPSRDHYT----------CMVDLLGR---------------AGHLKEAEELINDMPME 557
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
PD V +L AC +++E G W + +
Sbjct: 558 ---PDSVLWASLLGACRLHKNVELGEWTAGRL 586
>gi|302791537|ref|XP_002977535.1| hypothetical protein SELMODRAFT_106750 [Selaginella moellendorffii]
gi|300154905|gb|EFJ21539.1| hypothetical protein SELMODRAFT_106750 [Selaginella moellendorffii]
Length = 545
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 7/162 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARKMFD++ + + +W T+I Y+ ++ IF ++ S P++ TL V+ A +
Sbjct: 238 ARKMFDKMKERDTVSWTTMIAVYAEHGYDREALQIFKVMLLES-VAPDKVTLINVLDACS 296
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
G+ ++ G E DLV+ N++ + CG L A +F + +DVVSWN
Sbjct: 297 NVSGLAQGRLVYKQFVESGAHELDLVLGNAVARMFGSCGSLREAREIFESLAARDVVSWN 356
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+I+ + + G FE+++ L+R M E VKPDEVT V VLSAC+
Sbjct: 357 CLITAYAQHGSFEESLRLFRRMLEECVKPDEVTFVGVLSACS 398
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 34/222 (15%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMF---DQIPQPNLYTWNTLIR 96
++IH Q++ + + + + L S SLE ARK F D+ +P+L W +I
Sbjct: 132 RKIHTQVVESGYSGELSVGNALID--MYSKCGSLEDARKTFAGMDEKNKPDLVLWTAMIA 189
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
AY+ + ++F +F Q+ + P++ + I
Sbjct: 190 AYAGHGDYKEAFELFQQM-QDQGLKPDKSLVS---------------------------I 221
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+++H Y CG++A A +F + ++D VSW +MI+ + E G+ +A+++++ M +E+V
Sbjct: 222 GNAIVHMYGKCGNVADARKMFDKMKERDTVSWTTMIAVYAEHGYDREALQIFKVMLLESV 281
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSH-IEKNGIKMDLTF 257
PD+VT++ VL AC+ L G V +E ++DL
Sbjct: 282 APDKVTLINVLDACSNVSGLAQGRLVYKQFVESGAHELDLVL 323
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ L + A P + G IH + D+VISN+L++ Y CG L A +
Sbjct: 8 PDRVALIAALGACQDPSRLAAGVGIHSRITEAGLQGDIVISNALVNMYGKCGALESACEI 67
Query: 177 FVMIGKKDVVSWNSMISGFVEGGF-FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
F + + D +SWN MIS + + G E+A+EL+R M E + P++VT + +LSA + R
Sbjct: 68 FHGVPRNDAISWNGMISLYAQDGHSREEALELFRRMHGEGLTPNKVTFLAILSAVSGARG 127
Query: 236 LEFGIWVSSHIEKNGIKMDLT 256
LE G + + + ++G +L+
Sbjct: 128 LEEGRKIHTQVVESGYSGELS 148
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 8/158 (5%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+LE A ++F +P+ + +WN +I Y+ + + + ++ PN+ T +
Sbjct: 59 GALESACEIFHGVPRNDAISWNGMISLYAQDGHSREEALELFRRMHGEGLTPNKVTFLAI 118
Query: 131 IKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-- 183
+ A + G+ IH + +L + N+LI Y+ CG L A F + +K
Sbjct: 119 LSAVSGARGLEEGRKIHTQVVESGYSGELSVGNALIDMYSKCGSLEDARKTFAGMDEKNK 178
Query: 184 -DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220
D+V W +MI+ + G +++A EL+++M+ + +KPD+
Sbjct: 179 PDLVLWTAMIAAYAGHGDYKEAFELFQQMQDQGLKPDK 216
>gi|255541070|ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548779|gb|EEF50268.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 429
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 94/160 (58%), Gaps = 5/160 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FD +P+ NL++WN +I YS +++ ++ +F ++ + + P++ T+ V+ A A
Sbjct: 235 ARSLFDAMPERNLFSWNAMIGGYSQNNKSHEALKLFHEMQSRTLFEPDKVTVVSVLPAIA 294
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G IH + + + +L+ YA CG++ A VF + KK+ SWN+
Sbjct: 295 DLGALDLGSWIHQFARLKKIDRSINVCTALVDMYAKCGEMLKARRVFDSMPKKEEASWNA 354
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+I+GF G ++A+ + EM+ E VKP++VTM+ VLSAC
Sbjct: 355 LINGFAVNGCADEALTAFSEMKREGVKPNDVTMISVLSAC 394
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 7/202 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH +L F D Y ++ L A F L ARKMFD++ + + +W LI S
Sbjct: 110 IHNHVLKMGFGLDLYVSTALVDMYA--KFGELCMARKMFDEMAERGVVSWTALIGGCMRS 167
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLI 161
+ + ++F Q+ N +V Q M +++ S+I
Sbjct: 168 GDMGNARILFDQMPEKDSAAYNAMLDGYVKAGDMESAQ----SLFDKMPARNVISWTSMI 223
Query: 162 HFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV-KPDE 220
+ Y GD+ A +F + ++++ SWN+MI G+ + +A++L+ EM+ + +PD+
Sbjct: 224 YGYCSGGDVLTARSLFDAMPERNLFSWNAMIGGYSQNNKSHEALKLFHEMQSRTLFEPDK 283
Query: 221 VTMVVVLSACAKKRDLEFGIWV 242
VT+V VL A A L+ G W+
Sbjct: 284 VTVVSVLPAIADLGALDLGSWI 305
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 10/191 (5%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIP-QPNLYTWNTLIRAYSSSDEPIQSFMIF 111
F S P + + +++AR++FD P + + + N++I+A+ + +SF ++
Sbjct: 16 FITISGCLALIPSVYESLAIIQHARQVFDNRPHKDDTFLCNSMIKAHVGMRQFYESFTLY 75
Query: 112 LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAV 166
L + + P+ FT + K+ + G IH F DL +S +L+ YA
Sbjct: 76 QDLRKGTGFLPDNFTFTALAKSCGLNMAVWEGFEIHNHVLKMGFGLDLYVSTALVDMYAK 135
Query: 167 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226
G+L MA +F + ++ VVSW ++I G + G A L+ +M + D +
Sbjct: 136 FGELCMARKMFDEMAERGVVSWTALIGGCMRSGDMGNARILFDQMP----EKDSAAYNAM 191
Query: 227 LSACAKKRDLE 237
L K D+E
Sbjct: 192 LDGYVKAGDME 202
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 115/210 (54%), Gaps = 14/210 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
N Q+K++HAQ++ + D + A KL + ALS A ++F+Q+ +PN++ N+
Sbjct: 30 ANLNQVKQLHAQIIRRNLHQDLHIAPKLIS--ALSLCRQTNLALRVFNQVQEPNVHLCNS 87
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-- 151
LIRA++ + +P Q+F +F ++ F + FT PF++KA + V + +H E
Sbjct: 88 LIRAHALNSQPYQAFFVFSEM-QRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEKL 146
Query: 152 ---DDLVISNSLIHFYAVCGDLAM--AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
D+ + N+LI Y+ CG L + A +F + ++D VSWNSM+ G V+ G A +
Sbjct: 147 GLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARK 206
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDL 236
L+ EM + D ++ +L A+ R++
Sbjct: 207 LFDEMP----QRDLISWNTMLDGYARCREM 232
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 8/180 (4%)
Query: 68 STFSSLEYARKMFDQIPQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
S +E AR MFD++P P N+ TW +I Y+ ++ + Q+V + F
Sbjct: 258 SKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAA 317
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+ + A + +G H + + + + N+L+ YA CG L A+ VF +
Sbjct: 318 AISILAACAESGL-LSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDM 376
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
KKD+VSWN+M+ G G ++AIEL+ M E + PD+VT + VL +C ++ GI
Sbjct: 377 PKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGI 436
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 37/188 (19%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L L ARK+FD++PQ +L +WNT++ Y+ E ++F +F +
Sbjct: 194 GLVKAGELRDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEK------------ 241
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG--KK 183
M E + V ++++ Y+ GD+ MA +F + K
Sbjct: 242 -----------------------MPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAK 278
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+VV+W +I+G+ E G ++A +L +M ++ D + +L+ACA+ L G+
Sbjct: 279 NVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGMRAH 338
Query: 244 SHIEKNGI 251
S I+K+ +
Sbjct: 339 SIIKKSNL 346
>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 606
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 11/207 (5%)
Query: 40 KRIHAQMLSTDFFFD-PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
K+IHA + D P S L C + A++ F ++ + NL TWNTLI Y
Sbjct: 231 KQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCD---AKRCFGELTEKNLITWNTLIAGY 287
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDD 153
SD +S +F Q+ + Y PN FT + A A GQ +HG F+ +
Sbjct: 288 ERSDSS-ESLSLFFQMG-SEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKN 345
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ + NSLI YA CG ++ ++ +F + +D+VSW +M+ G+ G+ ++A++L+ EM
Sbjct: 346 VALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQ 405
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGI 240
++PD + + VL C+ ++ G+
Sbjct: 406 SGIQPDRIVFMGVLCGCSHAGLVDKGL 432
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 9/234 (3%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS--LEYARKMFDQIPQP 86
HP L + L+ I L ++ F P S T S F A +F++IP+
Sbjct: 13 HPIPLIVRNSLQWISNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLFNEIPER 72
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
++ TW +I ++S + Q++ +F +++ S PN FT+ V+KA G
Sbjct: 73 DVVTWTAMIVGFTSCNHYHQAWTMFSEML-RSEVQPNAFTMSSVLKACKGMKALSCGALA 131
Query: 147 HGM-----FEDDLVISNSLIHFYAV-CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
H + + + + N+L+ YA C + A VF I K VSW ++I+GF G
Sbjct: 132 HSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGD 191
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ +R+M +E+V P+ + + ACA G + + + K G+ D
Sbjct: 192 GYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCD 245
>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial-like [Brachypodium distachyon]
Length = 678
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 97/172 (56%), Gaps = 8/172 (4%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E AR++FD++ +L W T+I Y+ + P+ + ++F+ + PN T+ V+ A
Sbjct: 280 EDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMR-IVPNSVTIATVLSA 338
Query: 134 AARPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+A+ +G++IHG+ E+D+V+ N+L+ YA C L+ A +F + KDVV+
Sbjct: 339 SAQLRNLSLGRSIHGISVKLGAVENDVVM-NALVDMYAKCKALSDAKGIFGRVLNKDVVT 397
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
WNS+I+G+ E A+ L+ M V+ PD +++V LSAC DL G
Sbjct: 398 WNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIG 449
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 7/223 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T L+ +HA++L+ + +KL + + L AR++ D+ P P+ YT+
Sbjct: 39 TTLPSLRALHARLLAHGLLRGLRAHTKLLS--CYAALGDLASARRVLDETPHPDAYTYKV 96
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT-LPFVIKAAARPVQFRVGQAIH----G 148
+ ++++ ++ + + P + L +KAA R F G+ +H
Sbjct: 97 ALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFGYGRRLHCDVVK 156
Query: 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
DL + N+L+ YA GDL A VF I ++VVSW SM+SG ++ G ++ + L+
Sbjct: 157 AGGGDLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLF 216
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
EM E++ P E TM VL AC L G + + K+G+
Sbjct: 217 NEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGL 259
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 88/174 (50%), Gaps = 6/174 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L+ ARK+FD+IP N+ +W +++ + + ++F ++ S P+E+T+ V
Sbjct: 176 GDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQES-ILPSEYTMASV 234
Query: 131 IKAAARPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A G+ IHG ++SN +++ Y CG+ A VF + D+
Sbjct: 235 LMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDL 294
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
V W +MI G+ + G A+ L+ + + + P+ VT+ VLSA A+ R+L G
Sbjct: 295 VLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLG 348
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 82/165 (49%), Gaps = 6/165 (3%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
+L A+ +F ++ ++ TWN+LI Y+ +D + M+F + P+ ++ +
Sbjct: 379 ALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGS-LPDAISVVNAL 437
Query: 132 KAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A +G+ H F ++ ++ +L++ Y C DL A VF + ++ V
Sbjct: 438 SACVCLGDLLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTV 497
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+W +MI G+ G +I+L+ EM +N++P+E +LS C+
Sbjct: 498 TWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCS 542
>gi|357446017|ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 622
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 115/220 (52%), Gaps = 13/220 (5%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H T + DP ++ + + A F +E AR++FD +P + TWN++I AY
Sbjct: 87 QLHCLAFITGSYTDPIVSNSIISMYA--KFFDIESARQVFDTMPHRDTITWNSMINAYLQ 144
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ--FRVGQAIHGM--------F 150
+ +++ + L+ Y + P L ++ R + +R+G+ IHG+
Sbjct: 145 NGLLVEALQM-LKDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRI 203
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ + +S + + FY CGD MA VF + K+ VSW ++ISG ++ A+ YRE
Sbjct: 204 QHSVFLSTAFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYRE 263
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
M+VE V P+ VT++ +L+ACA+ +++G + + + G
Sbjct: 264 MQVEGVSPNRVTLIALLAACARPGFVKYGKEIHGYAFRRG 303
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 12/222 (5%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDF-FFDPYSASKLFTPCALSTFSSL 73
PN TL P F+ K K IH F +S + ++ C SL
Sbjct: 271 PNRVTLIALLAACARPGFV---KYGKEIHGYAFRRGFDSCHSFSPALIYLYCECG--QSL 325
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
A ++F+ ++ W+++I +Y+ E ++ +F ++ PN TL VI A
Sbjct: 326 HLAERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETE-PNYVTLLAVISA 384
Query: 134 AARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
F+ G IHG + + N+LI+ YA CG L + +F+ + +D V+W
Sbjct: 385 CTNLSSFKHGGVIHGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTW 444
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
NSMIS + G+ E+A++ + EM+ VK D VT + VLSAC
Sbjct: 445 NSMISAYGLHGYGEQALQHFYEMKERGVKLDAVTFLAVLSAC 486
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 7/186 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FD++ N +W +I +++ + + + ++ PN TL ++ A A
Sbjct: 226 ARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVS-PNRVTLIALLAACA 284
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG-DLAMAYCVFVMIGKKDVVSWN 189
RP + G+ IHG F+ S +LI+ Y CG L +A +F +DVV W+
Sbjct: 285 RPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVVLWS 344
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
S+I + G +KA++L+ +M E +P+ VT++ V+SAC + G + +I K
Sbjct: 345 SIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYILKF 404
Query: 250 GIKMDL 255
GI +
Sbjct: 405 GIGFSI 410
>gi|356577133|ref|XP_003556682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Glycine max]
Length = 773
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 9/226 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N +++ R+H +L FF P + C+ L AR++FD + + N TW +
Sbjct: 253 NMEEVGRVHTIVLK--FFIHPVTYVDNNLICSYLRLGKLAQARRVFDGMSRKNTVTWTAI 310
Query: 95 IRAYSSSDEPIQSFMIFLQLV-YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED- 152
I Y + ++F +F V + P N ++ R V +G+ IH
Sbjct: 311 IDGYLKFNLDDEAFKLFQDCVKHGVP--ANSKMFVCIMNLCGRRVDLELGKQIHARILKS 368
Query: 153 ---DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+L++ N+++HFYA CG+++ A+ F + ++DV+ W +MI+ + GF +A+ +
Sbjct: 369 RWRNLIVDNAVVHFYAKCGNISSAFRAFDCMAERDVICWTTMITACSQQGFGHEALSMLS 428
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+M + P+E T+ L AC + + L+FG + I K K D+
Sbjct: 429 QMLSDGFYPNEYTICSALKACGENKALKFGTQLHGAIIKKICKSDV 474
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 113/223 (50%), Gaps = 13/223 (5%)
Query: 40 KRIHAQMLSTDF--FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
K+IHA++L + + + + C ++ A + FD + + ++ W T+I A
Sbjct: 359 KQIHARILKSRWRNLIVDNAVVHFYAKCG-----NISSAFRAFDCMAERDVICWTTMITA 413
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFED 152
S ++ + Q++ + ++PNE+T+ +KA + G +HG + +
Sbjct: 414 CSQQGFGHEALSMLSQMLSDG-FYPNEYTICSALKACGENKALKFGTQLHGAIIKKICKS 472
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ I SL+ YA CG + + VF + ++ +W S+ISG+ GF E+A +R M+
Sbjct: 473 DVFIGTSLVDMYAKCGVMVDSKVVFDRMRIRNTATWTSIISGYARNGFGEEATSFFRLMK 532
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++ + +++T++ VL AC + L FG V + I K+ I ++
Sbjct: 533 MKRIHVNKLTVLSVLMACGTIKSLLFGREVHAQIIKSNIHTNI 575
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 99/201 (49%), Gaps = 16/201 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL-FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+ +HAQ++ ++ + Y S L + C +S YA K+ +P ++ +W +I
Sbjct: 560 REVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYS---YAFKVLQYMPFRDVVSWTAIISGC 616
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR---PVQFRVGQAIHGMFE---- 151
+ ++ + FLQ + PN +T +KA A P+Q G+ IH
Sbjct: 617 ARLGLEHEA-LEFLQEMMEEGVLPNSYTYSSALKACAELEAPIQ---GKLIHSYASKTPA 672
Query: 152 -DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
++ ++++LI+ Y+ CG +A A+ VF + +++VVSW SMI + G +A++L
Sbjct: 673 SSNVFVNSALIYMYSKCGYVADAFQVFDNMPERNVVSWESMILAYARNGHAREALKLMHR 732
Query: 211 MEVENVKPDEVTMVVVLSACA 231
M+ E D+ V+SAC
Sbjct: 733 MQAEGFVVDDYIHTTVISACG 753
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSD--EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
++ +FD++ N TW ++I Y+ + E SF +++ N+ T+ V+ A
Sbjct: 493 SKVVFDRMRIRNTATWTSIISGYARNGFGEEATSFFRLMKM---KRIHVNKLTVLSVLMA 549
Query: 134 AARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
G+ +H ++ + ++L+ FY C + + A+ V + +DVVSW
Sbjct: 550 CGTIKSLLFGREVHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPFRDVVSW 609
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
++ISG G +A+E +EM E V P+ T L ACA+
Sbjct: 610 TAIISGCARLGLEHEALEFLQEMMEEGVLPNSYTYSSALKACAE 653
>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g21470-like [Glycine max]
Length = 535
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 6/185 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +FD +P NL WN++I Y + ++ + F + + + P+EFT+ V+ A A
Sbjct: 226 AAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAF-EGMGAEGFEPDEFTVVSVLSACA 284
Query: 136 RPVQFRVGQAIHGMFEDDLVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ VG+ IH M E ++ N L+ YA CGDL A VF +K++ WN+
Sbjct: 285 QLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNA 344
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISGF G + +E + ME N++PD +T + VLSACA + + + V S +E
Sbjct: 345 MISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRGLVTEALEVISKMEGYR 404
Query: 251 IKMDL 255
I++ +
Sbjct: 405 IEIGI 409
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 31/242 (12%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+K +HA+ + D + L T S + AR +FD +P+ N+ TWN +I Y
Sbjct: 65 VKALHAESIKAGSESDVIIGTALLT--TYSKCGVVRDARNLFDTMPERNVVTWNAMISGY 122
Query: 99 SSSDEPIQSFMIF------LQLVYNS---------------------PY-FPNEFTLPFV 130
+ + ++++F Q+ ++ P+ N T +
Sbjct: 123 LRNGDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDIATARRLFDEVPHELKNVVTWTVM 182
Query: 131 IKAAARPVQFRVGQAIHGMF-EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ AR + + + M E + + +S+IH Y G++ A VF + +++ WN
Sbjct: 183 VDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWN 242
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
SMI+G+V+ GF EKA+ + M E +PDE T+V VLSACA+ L+ G + IE
Sbjct: 243 SMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHK 302
Query: 250 GI 251
GI
Sbjct: 303 GI 304
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 115 VYNSPYFPNEF----TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDL 170
VY+S P F +LPF+ V+ ++I E D++I +L+ Y+ CG +
Sbjct: 43 VYDSSVAPLLFKACASLPFL-----HYVKALHAESIKAGSESDVIIGTALLTTYSKCGVV 97
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
A +F + +++VV+WN+MISG++ G E A ++ +M+ + +VT ++
Sbjct: 98 RDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKMQGKT----QVTWSQMIGGF 153
Query: 231 AKKRDL 236
A+ D+
Sbjct: 154 ARNGDI 159
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 18/235 (7%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLTNQKQ---LKRIHAQMLSTDFFFDPYSASKLFTPCAL 67
I R N T ++R P N K LK+IHA M+ + +L +L
Sbjct: 2 IRRQTNDRTT-----NRRRPKLWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASL 56
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +L+YA K+FD+IP+P++ N ++R + S +P ++ ++ ++ P+ +T
Sbjct: 57 SVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEM-EKRGVSPDRYTF 115
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
FV+KA ++ G A HG F + + N+LI F+A CGDL +A +F K
Sbjct: 116 TFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAK 175
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
V+W+SM SG+ + G ++A+ L+ EM + D+V V+++ C K ++++
Sbjct: 176 AHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAWNVMITGCLKCKEMD 226
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 97/198 (48%), Gaps = 14/198 (7%)
Query: 52 FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF 111
+ D + + + T C ++ AR++FD+ + ++ TWN +I Y + P ++ IF
Sbjct: 206 YKDQVAWNVMITGCL--KCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIF 263
Query: 112 LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVIS----------NSLI 161
++ ++ P+ T+ ++ A A G+ +H + +S N+LI
Sbjct: 264 KEM-RDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALI 322
Query: 162 HFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV 221
YA CG + A VF + +D+ +WN++I G E +IE++ EM+ V P+EV
Sbjct: 323 DMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLAL-HHAEGSIEMFEEMQRLKVWPNEV 381
Query: 222 TMVVVLSACAKKRDLEFG 239
T + V+ AC+ ++ G
Sbjct: 382 TFIGVILACSHSGRVDEG 399
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 10/199 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +HAQ+L DP+ + L + S+ ++ AR +F +P+ N+ +W+ +I Y
Sbjct: 84 RSVHAQILRFGLAIDPFVQTSLIS--MYSSSGLVDMARNLFAVMPERNVISWSCMINGYV 141
Query: 100 SSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED----- 152
+ ++ +F +Q++ + PNEFT+ V+ A R G+ H +
Sbjct: 142 RCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPV 201
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIG-KKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+V+ +LI YA CG + A VF +G KDV++W++MISG G E+ + L+ +M
Sbjct: 202 DVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKM 261
Query: 212 EVENVKPDEVTMVVVLSAC 230
+ V+P+ VT + V AC
Sbjct: 262 INQGVRPNAVTFLAVFCAC 280
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 107/187 (57%), Gaps = 14/187 (7%)
Query: 84 PQPNLYTWNTLIRAYSSSDE----PIQS-FMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138
P + WNTLIRA+ + P S IF+++ ++ P+ T PF++++ A P
Sbjct: 20 PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQ-PDFHTFPFLLQSFASPS 78
Query: 139 QFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
+G+++H D + SLI Y+ G + MA +F ++ +++V+SW+ MI+
Sbjct: 79 LLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMIN 138
Query: 194 GFVEGGFFEKAIELYREME---VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
G+V G +++A+ L+REM+ V +V+P+E TM VL+AC + LE G W ++I+K G
Sbjct: 139 GYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCG 198
Query: 251 IKMDLTF 257
+ +D+
Sbjct: 199 MPVDVVL 205
>gi|224084768|ref|XP_002307403.1| predicted protein [Populus trichocarpa]
gi|222856852|gb|EEE94399.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 101/182 (55%), Gaps = 6/182 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L+ A +FD++ + ++ +W T+I A S ++F +F Q++ N + PN FT ++K
Sbjct: 91 LKSAFCVFDRMVERDVVSWTTMITACSQQGRCGEAFGMFTQML-NGGFLPNGFTASGILK 149
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + G+ IHG M++DD+ + SL+ YA CG+++ + VF + +++ V+
Sbjct: 150 ACGEEKALKFGKQIHGAIVKKMYKDDVFVGTSLVDMYAKCGEVSDSSKVFNGMRRRNTVT 209
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W S+I+G+ G E+AI L+R M V + +T+V +L AC L G V + I
Sbjct: 210 WTSIIAGYARKGLGEEAICLFRLMMRRRVVSNNLTIVSMLRACGLIGALLAGREVHAQII 269
Query: 248 KN 249
KN
Sbjct: 270 KN 271
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 5/177 (2%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+P+ N+ +W +I Y ++ F Q + + PN T V+ +R + F +
Sbjct: 1 MPERNVVSWTAMINGYFKFGLDDEALSYFSQAIKDG-VVPNSKTFVCVLNLCSRRLDFEL 59
Query: 143 GQAIHGMFED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
G+ +H +L++ +++++FY CGDL A+CVF + ++DVVSW +MI+ +
Sbjct: 60 GRQVHARVVKGNWRNLIVDSAVVYFYVQCGDLKSAFCVFDRMVERDVVSWTTMITACSQQ 119
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
G +A ++ +M P+ T +L AC +++ L+FG + I K K D+
Sbjct: 120 GRCGEAFGMFTQMLNGGFLPNGFTASGILKACGEEKALKFGKQIHGAIVKKMYKDDV 176
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 14/201 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ +HAQ++ + Y S L + C S +S K+ Q+P ++ +W +I
Sbjct: 262 REVHAQIIKNCSQSNEYLGSTLVWFYCKCGESRTAS-----KVLQQMPFRDVVSWTAIIS 316
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----E 151
++ ++ + FL+ + PN FT +KA A G+ IH
Sbjct: 317 GHACLGHESEA-LEFLKEMMEEGVEPNSFTYSSALKACANLETVLQGKLIHSSANKTPAS 375
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ + ++LIH YA CG ++ A VF + ++++V+W +MI G+V G ++A++L M
Sbjct: 376 SNVFVGSALIHMYARCGYVSEAIQVFDSMPERNLVTWRAMIMGYVRNGLCQEALKLMYRM 435
Query: 212 EVENVKPDEVTMVVVLSACAK 232
+ E ++ D+ VL AC +
Sbjct: 436 QAEGIQVDDYISAKVLGACGE 456
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 14/200 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+IH ++ + D + + L + C + SS K+F+ + + N TW ++I
Sbjct: 161 KQIHGAIVKKMYKDDVFVGTSLVDMYAKCGEVSDSS-----KVFNGMRRRNTVTWTSIIA 215
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
Y+ ++ +F +L+ N T+ +++A G+ +H +
Sbjct: 216 GYARKGLGEEAICLF-RLMMRRRVVSNNLTIVSMLRACGLIGALLAGREVHAQIIKNCSQ 274
Query: 157 SN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
SN +L+ FY CG+ A V + +DVVSW ++ISG G +A+E +EM
Sbjct: 275 SNEYLGSTLVWFYCKCGESRTASKVLQQMPFRDVVSWTAIISGHACLGHESEALEFLKEM 334
Query: 212 EVENVKPDEVTMVVVLSACA 231
E V+P+ T L ACA
Sbjct: 335 MEEGVEPNSFTYSSALKACA 354
>gi|302786722|ref|XP_002975132.1| hypothetical protein SELMODRAFT_102729 [Selaginella moellendorffii]
gi|300157291|gb|EFJ23917.1| hypothetical protein SELMODRAFT_102729 [Selaginella moellendorffii]
Length = 404
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 7/162 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
ARKMFD++ + + +W T+I Y+ ++ IF ++ S P++ TL V+ A +
Sbjct: 97 ARKMFDKMRERDTVSWTTMIAVYAEHGYDREALQIFKVMLLES-VAPDKVTLINVLDACS 155
Query: 136 RPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
G+ ++ G E DLV+ N++ + CG L A +F + +DVVSWN
Sbjct: 156 NVSGLAQGRLVYKQFVESGAHELDLVLGNAVARMFGSCGSLREAREIFESLAARDVVSWN 215
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+I+ + + G FE+++ L+R M E VKPDEVT V VLSAC+
Sbjct: 216 CLITAYAQHGSFEESLRLFRRMLEECVKPDEVTFVGVLSACS 257
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 148 GMFEDDLVIS--NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
GM E + ++S N+++H Y CG++A A +F + ++D VSW +MI+ + E G+ +A+
Sbjct: 70 GMDEKNGLVSIGNAIVHMYGKCGNVADARKMFDKMRERDTVSWTTMIAVYAEHGYDREAL 129
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH-IEKNGIKMDLTF 257
++++ M +E+V PD+VT++ VL AC+ L G V +E ++DL
Sbjct: 130 QIFKVMLLESVAPDKVTLINVLDACSNVSGLAQGRLVYKQFVESGAHELDLVL 182
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 120/254 (47%), Gaps = 46/254 (18%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY---ARKMFDQIPQPNLYTWNTLIRA 97
++HA + + D Y S L L ++ E+ AR++F+ +P+ N+ +WN+LI
Sbjct: 913 QVHALVSKSPHAKDVYIGSAL-----LDMYAKCEWPEEARRVFEAMPERNIVSWNSLITC 967
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FE 151
Y + ++ ++F+ ++ + + P+E TL V+ A A R G+ +H F
Sbjct: 968 YEQNGPVGEALVLFVSMM-KAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFR 1026
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIG------------------------------ 181
+D+V+SN+L+ YA CG A CVF +
Sbjct: 1027 EDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQM 1086
Query: 182 -KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+K+V++WN +I+ + + G E+A+ L+ ++ E+V P T VL+AC DL+ G
Sbjct: 1087 VEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQ 1146
Query: 241 WVSSHIEKNGIKMD 254
H+ K G + D
Sbjct: 1147 QAHVHVLKEGFRFD 1160
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 43/261 (16%)
Query: 33 LTNQKQLKRIHAQMLSTDFF--------------------------FDPYSASKLFTPCA 66
L ++ +++HA+++ +D F FD ++ + + +
Sbjct: 1006 LAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETS 1065
Query: 67 LSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP 122
L T +++E A+ +F Q+ + N+ WN LI AY+ + E ++ +F++L S + P
Sbjct: 1066 LITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVW-P 1124
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGMF-----------EDDLVISNSLIHFYAVCGDLA 171
+T V+ A ++GQ H E D+ + NSL+ Y G +
Sbjct: 1125 THYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 1184
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
VF + +D VSWN+MI G + G + A+ L+ M PD VTM+ VLSAC
Sbjct: 1185 DGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACG 1244
Query: 232 KKRDLEFG-IWVSSHIEKNGI 251
+E G + S E +GI
Sbjct: 1245 HSGLVEEGRRYFRSMTEDHGI 1265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 35/201 (17%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS------------------ 107
A + L AR++FD+IP PN +++N L+ A++ P +
Sbjct: 804 AYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQCSYNAV 863
Query: 108 ------------FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED--- 152
++FL ++ + N ++ + A A R G +H +
Sbjct: 864 IAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPH 923
Query: 153 --DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D+ I ++L+ YA C A VF + ++++VSWNS+I+ + + G +A+ L+
Sbjct: 924 AKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVS 983
Query: 211 MEVENVKPDEVTMVVVLSACA 231
M PDEVT+ V+SACA
Sbjct: 984 MMKAGFVPDEVTLASVMSACA 1004
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 17/210 (8%)
Query: 40 KRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKM--FDQIPQPNLYTWNTL 94
+ +HA + FF P + ++++ C L A ++ F+ + + Y+WN+L
Sbjct: 404 EEVHAFAIKCGFFSSPILKNALVRMYSKCG-----CLRSAERLLLFEMGSERDSYSWNSL 458
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
I Y + ++ S PN+ T + A A + G IH
Sbjct: 459 ISGYER--HSMSEAALYALTKMQSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKG 516
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+E D ++ + LI Y C + +F +DV+ WNSMI G G E ++L+
Sbjct: 517 YEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFD 576
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
EM+ + +K D VT + L +C + + G
Sbjct: 577 EMQKQGIKADSVTFLGALVSCISEGHVRLG 606
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 45/250 (18%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+++H + DF + + L + C L L AR+ FD I +PN +WN ++R
Sbjct: 171 RQLHGHIAKRDFQSNVILGTALVDVYGNCFL-----LADARRAFDDILEPNAISWNVIVR 225
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + + +F +++ ++ P +T+ + A G+ IH +E
Sbjct: 226 RYHLAGMGDMAVDMFFRML-SAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYE 284
Query: 152 DDLVISNSLIHFYAVCGDL-----------------------AMAYC--------VFVMI 180
+ + +S++ YA CG + +A C VF +
Sbjct: 285 HHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGM 344
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++++VSWN+M++G++ A+ L+++M E + D +T+ VLSAC D+ G
Sbjct: 345 KERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGE 404
Query: 241 WVSSHIEKNG 250
V + K G
Sbjct: 405 EVHAFAIKCG 414
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 92/191 (48%), Gaps = 8/191 (4%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNE 124
+L+ S+ AR++FD +P + +WN +I A S + P ++ +F + NS P +
Sbjct: 94 SLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNM--NSLGIRPKD 151
Query: 125 FTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
T+ V+ A + + +HG F+ ++++ +L+ Y C LA A F
Sbjct: 152 ATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDD 211
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
I + + +SWN ++ + G + A++++ M V+P T+ + AC LE G
Sbjct: 212 ILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEG 271
Query: 240 IWVSSHIEKNG 250
+ + + ++G
Sbjct: 272 RCIHAFVLRHG 282
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
N I A CG +A A +F ++ +D SWN++I+ G +A+ L+ M ++
Sbjct: 89 NRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIR 148
Query: 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
P + TM VLS CA+ DL + HI K
Sbjct: 149 PKDATMASVLSCCAECLDLCGARQLHGHIAK 179
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 84/211 (39%), Gaps = 33/211 (15%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLI 95
++ H +L F FD S +F +L S++ K+F+++ + +WN +I
Sbjct: 1146 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMI 1205
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV 155
++ + + +F +++ S P+ T+ V+ A G+ +D
Sbjct: 1206 VGHAQNGRAKDALHLFERMLC-SKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHG 1264
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
I S H+ C+ ++G+ G ++ EL +EM +E
Sbjct: 1265 IIPSQDHYT----------CMIDLLGR---------------AGHLKEVEELIKEMSME- 1298
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
PD V +L +C +++E G W + +
Sbjct: 1299 --PDAVLWASLLGSCRLHKNVEMGEWAAGKL 1327
>gi|302817567|ref|XP_002990459.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
gi|300141844|gb|EFJ08552.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
Length = 830
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 11/205 (5%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
TN + H ++ + DP A+ L S SLE A + FD I +P++ +WN
Sbjct: 526 TNLSSARDFHERIRQLGWEKDPLVANALLE--VYSACGSLEDANETFDGIGEPSVISWNL 583
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------ 147
LI A++ P ++F + L+ + + P+ TL VI + A FR G+ IH
Sbjct: 584 LIAAHTRLGHPDRAFDL-LRAMELQGHNPDSVTLATVINSRASLQLFRKGKIIHDSILEA 642
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD-VVSWNSMISGFVEGGFFEKAIE 206
GM E D V++ +L++FY CGD A A +F +G D VV+WNS ++ + + G +A+
Sbjct: 643 GM-EIDSVVATALVNFYGKCGDFATARSIFQGVGAADNVVTWNSTLAAYAQSGHASEALH 701
Query: 207 LYREMEVENVKPDEVTMVVVLSACA 231
+ EM + V P VT V VLS C
Sbjct: 702 VLAEMVQQGVAPTAVTFVSVLSVCG 726
Score = 94.0 bits (232), Expect = 5e-17, Method: Composition-based stats.
Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 22/246 (8%)
Query: 18 TTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLE 74
TT+T R H L K+L HAQ++S + + A+ ++ C S++
Sbjct: 9 TTVTDLAASLRACHTLPKGKEL---HAQIVSDGLDKNLHLANGIVHMYLVC-----KSVD 60
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
ARK+FD++ + W ++ AY+ ++ +F +++ + P+ TL VI A
Sbjct: 61 NARKVFDKMASRDAGLWAPMMAAYARVGHLQEATGLFHRML-DEGVVPDRVTLLTVINAC 119
Query: 135 ARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVF-VMIGKKDVVSW 188
+ G+ +H FE + + +L+ YA CG + A VF + +K++VSW
Sbjct: 120 SESGSLAEGRRVHRRIQGSDFEWSVDVGTALVRMYAKCGSVDEARRVFDNRLLRKNIVSW 179
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+M+S +VE G E+A+ L+ EM E V P+E+T V VL+AC DL+ G V IE+
Sbjct: 180 TTMVSAYVERGCLEQALTLFIEMLQEGVAPNEITYVSVLNAC----DLDAGRKVHRLIEQ 235
Query: 249 NGIKMD 254
+G+ D
Sbjct: 236 SGLDSD 241
Score = 91.7 bits (226), Expect = 3e-16, Method: Composition-based stats.
Identities = 57/207 (27%), Positives = 106/207 (51%), Gaps = 19/207 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFD-QIPQPNLYTWNTLI 95
+R+H ++ +DF + + +++ C S++ AR++FD ++ + N+ +W T++
Sbjct: 129 RRVHRRIQGSDFEWSVDVGTALVRMYAKCG-----SVDEARRVFDNRLLRKNIVSWTTMV 183
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE---- 151
AY Q+ +F++++ PNE T V+ A G+ +H + E
Sbjct: 184 SAYVERGCLEQALTLFIEMLQEG-VAPNEITYVSVLNAC----DLDAGRKVHRLIEQSGL 238
Query: 152 -DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D + N+LI Y CG L A VF I ++++ WNSMI+G+ + +E +R+
Sbjct: 239 DSDAFVGNALIKMYRRCGSLEDASLVFDGIADRNLLVWNSMIAGYASLNEAQGTLEFFRK 298
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLE 237
M ++ K D+ T++ VL ACAK L+
Sbjct: 299 MLLDGWKGDKHTLLTVLDACAKSSTLQ 325
Score = 90.9 bits (224), Expect = 5e-16, Method: Composition-based stats.
Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 16/205 (7%)
Query: 60 KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119
K++ C SLE A +FD I NL WN++I Y+S +E + F +++ +
Sbjct: 250 KMYRRCG-----SLEDASLVFDGIADRNLLVWNSMIAGYASLNEAQGTLEFFRKMLLDG- 303
Query: 120 YFPNEFTLPFVIKAAARPVQFRVG--QAIHGM-----FEDDLVISNSLIHFYAVCGDLAM 172
+ ++ TL V+ A A+ + Q IH + + D ++ +L+ + GD
Sbjct: 304 WKGDKHTLLTVLDACAKSSTLQASSLQTIHDLAVESGLDSDTLVGTALVKIKSEQGDRKS 363
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC-- 230
A VF + KD+ +WN M S + + G A+EL +M+++ V+PD+VT V +LSAC
Sbjct: 364 AKMVFDSLRAKDLAAWNCMFSAYAKHGRLRDAMELQEQMKLDQVRPDKVTFVSILSACTA 423
Query: 231 -AKKRDLEFGIWVSSHIEKNGIKMD 254
LE G I + G ++D
Sbjct: 424 TGSSLGLETGKKTHEEILEQGYRLD 448
Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats.
Identities = 54/223 (24%), Positives = 110/223 (49%), Gaps = 17/223 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+ H ++L + D + +++ C L+ A+ +F+++ +L +W T++
Sbjct: 434 KKTHEEILEQGYRLDAVLGTALVRMYAACG-----RLDDAKLVFEKMESRDLISWTTMLG 488
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA-----AARPVQFRVGQAIHGMFE 151
AY+ + ++ + F ++ + P+ L + A +AR R+ Q +E
Sbjct: 489 AYTQARLLDEASITFRRIQLEG-HTPDRVALIAALGACTNLSSARDFHERIRQL---GWE 544
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D +++N+L+ Y+ CG L A F IG+ V+SWN +I+ G ++A +L R M
Sbjct: 545 KDPLVANALLEVYSACGSLEDANETFDGIGEPSVISWNLLIAAHTRLGHPDRAFDLLRAM 604
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E++ PD VT+ V+++ A + G + I + G+++D
Sbjct: 605 ELQGHNPDSVTLATVINSRASLQLFRKGKIIHDSILEAGMEID 647
>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
Length = 732
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 16/225 (7%)
Query: 40 KRIHAQMLSTDFFF--DPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
K+IHA++L F+ + Y +KL + C +LE A +F ++ N+++W +
Sbjct: 70 KQIHARILKKGDFYARNEYIETKLVIFYAKC-----DALEIAELLFSKLRVRNVFSWAAI 124
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
I + M F++++ N FP+ F +P V KA R G+ +HG
Sbjct: 125 IGVKCRIGLVEGALMGFVEMLENG-IFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAG 183
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F D + +++SL Y CG L A VF I +++VV+WN+++ G+V+ G E+AI L+
Sbjct: 184 FHDCVFVASSLADMYGKCGVLDEARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFS 243
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+M E V+P VT+ LSA A +E G + NG+++D
Sbjct: 244 DMRKEGVEPTRVTVSTCLSASANMGGIEEGKQSHAIAVVNGLELD 288
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 11/213 (5%)
Query: 50 DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFM 109
D F S + ++ C + L+ ARK+FD+IP+ N+ WN L+ Y + ++
Sbjct: 186 DCVFVASSLADMYGKCGV-----LDEARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIR 240
Query: 110 IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFY 164
+F + P T+ + A+A G+ H + E D ++ S+++FY
Sbjct: 241 LFSDM-RKEGVEPTRVTVSTCLSASANMGGIEEGKQSHAIAVVNGLELDNILGTSILNFY 299
Query: 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
G + A +F + +KDVV+WN +ISG+V+ G E AI + + M +EN+K D VT+
Sbjct: 300 CKVGLIECAEMIFDRMVEKDVVTWNLLISGYVQQGLVEDAIRMCQSMRLENLKFDCVTLS 359
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
++SA A+ +D + G V S+ ++ ++ D+
Sbjct: 360 TLMSAAARTQDSKLGKEVQSYCIRHSLESDIVL 392
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 76 ARKMFDQIPQ----PNLYTWNTLIRAY---SSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
A++MF Q+ PNL +W T++ S+E I +FL+ + S PN F++
Sbjct: 475 AKEMFLQMQSSGIIPNLVSWTTMMNGLVQNGCSEEAI----LFLRKMQESGLRPNVFSIT 530
Query: 129 FVIKAAARPVQFRVGQAIHGMFEDD------LVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A A G++IHG + + I SL+ YA CGD+ A VF
Sbjct: 531 VALSACANLASLHYGRSIHGYIIRNQRHCSSVSIETSLVDMYAKCGDINKAERVFRSKLY 590
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
++ +N+MISGF G ++AI LYR +E +KPD +T +LSAC D+ +
Sbjct: 591 SELPLYNAMISGFAVYGNVKEAIGLYRSLEDMGIKPDSITFTSLLSACNHAGDINQAFEI 650
Query: 243 -SSHIEKNGIK 252
+ + K+G+K
Sbjct: 651 FTDMVSKHGLK 661
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 7/162 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A +FD++ + ++ TWN LI Y + + + + F + TL ++
Sbjct: 305 IECAEMIFDRMVEKDVVTWNLLISGYVQQGLVEDAIRMCQSMRLENLKF-DCVTLSTLMS 363
Query: 133 AAARPVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
AAAR ++G+ I E D+V++++ + YA CG + A VF +KD++
Sbjct: 364 AAARTQDSKLGKEVQSYCIRHSLESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLIL 423
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM-VVVLS 228
WN+++ + E G +A+ L+ EM++E+V P+ +T +++LS
Sbjct: 424 WNTLLGAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILS 465
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 34/194 (17%)
Query: 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
+A ++ C S+ A+K+FD Q +L WNTL+ AY+ S ++ +F ++
Sbjct: 395 TAVDMYAKCG-----SIVDAKKVFDSTVQKDLILWNTLLGAYAESGLSGEALRLFYEMQL 449
Query: 117 NS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYC 175
S P PN T +I + R Q + + + +I N
Sbjct: 450 ESVP--PNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIIPN----------------- 490
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+VSW +M++G V+ G E+AI R+M+ ++P+ ++ V LSACA
Sbjct: 491 ---------LVSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNVFSITVALSACANLAS 541
Query: 236 LEFGIWVSSHIEKN 249
L +G + +I +N
Sbjct: 542 LHYGRSIHGYIIRN 555
>gi|218186279|gb|EEC68706.1| hypothetical protein OsI_37186 [Oryza sativa Indica Group]
Length = 416
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 20/236 (8%)
Query: 15 PNPTTLT---VNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFT---PCALS 68
PNP+ LT R PH L +QL HA+ L +P+ + L T C L
Sbjct: 66 PNPSHLTFPIALKSASRLPHPLRAGEQL---HARSLKLPSHTNPHVLTSLLTLYARCGL- 121
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
L A+++FD++P P+ +W LI AY + + ++ + N P+ FT
Sbjct: 122 ----LHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANG-MRPDSFTAV 176
Query: 129 FVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V+ A AR G+ + E + + ++ + + Y CG++A A VF + K
Sbjct: 177 RVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDK 236
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
D V+W +M+ G+ G +A++L+ M+ E V+PD + LSAC + L+ G
Sbjct: 237 DAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 292
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 122 PNEFTLPFVIKAAAR-PVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYC 175
P+ T P +K+A+R P R G+ +H + + SL+ YA CG L A
Sbjct: 68 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + VSW ++I+ +++ G +A+ + R ++PD T V VL+ACA+ D
Sbjct: 128 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 187
Query: 236 LEFGIWVSSHIEKNGI 251
L G V E+ GI
Sbjct: 188 LATGETVWRAAEQEGI 203
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 13/215 (6%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALST--------FSSLEYARKMFDQIPQPNLY 89
Q +HA + + S SKL L T SL YAR++FD +P N
Sbjct: 131 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 190
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TW+ LI + Q+F++F ++ F + ++ ++A A R+G+ +H +
Sbjct: 191 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 250
Query: 150 FED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
DL NSL+ YA G + A +F + KD VS+++++SG+V+ G E+A
Sbjct: 251 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEA 310
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++++M+ NV+PD TMV ++ AC+ L+ G
Sbjct: 311 FLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 345
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 103/204 (50%), Gaps = 8/204 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + + +++HA + + D + + L + A + ++ A +FD++ + +++
Sbjct: 238 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL--IDQAIALFDEMAVKDTVSYS 295
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
L+ Y + ++F++F ++ P+ T+ +I A + + G+ HG
Sbjct: 296 ALVSGYVQNGRAEEAFLVFKKM-QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 354
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ I N+LI YA CG + ++ VF M+ +D+VSWN+MI+G+ G ++A L
Sbjct: 355 RGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATAL 414
Query: 208 YREMEVENVKPDEVTMVVVLSACA 231
+ EM PD VT + +LSAC+
Sbjct: 415 FLEMNNLGFPPDGVTFICLLSACS 438
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
PN +T PF +KA + G+AIH + DL +S +L+ Y C L A +
Sbjct: 8 PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIE--LYREMEVENVKPDEVTMVVVLSACAKKR 234
F + +D+V+WN+M++G+ G + A+ L +M++ ++P+ T+V +L A++
Sbjct: 68 FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127
Query: 235 DLEFGIWVSSH 245
L G V ++
Sbjct: 128 ALAQGTSVHAY 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 24/232 (10%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IHA L D F + ++ CA L A +F +P +L WN ++ Y+
Sbjct: 37 IHAG-LQADLFVST-ALLDMYVKCA-----CLPDAAHIFATMPARDLVAWNAMLAGYAHH 89
Query: 102 DEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHG------------ 148
+ L + PN TL ++ A+ G ++H
Sbjct: 90 GMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRN 149
Query: 149 ---MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
D +++ +L+ YA CG L A VF + ++ V+W+++I GFV +A
Sbjct: 150 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAF 209
Query: 206 ELYREMEVENVK-PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
L++ M + + ++ L ACA L G + + + K+G+ DLT
Sbjct: 210 LLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLT 261
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 13/215 (6%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALST--------FSSLEYARKMFDQIPQPNLY 89
Q +HA + + S SKL L T SL YAR++FD +P N
Sbjct: 246 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TW+ LI + Q+F++F ++ F + ++ ++A A R+G+ +H +
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 365
Query: 150 FED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
DL NSL+ YA G + A +F + KD VS+++++SG+V+ G E+A
Sbjct: 366 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEA 425
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++++M+ NV+PD TMV ++ AC+ L+ G
Sbjct: 426 FLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 460
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 8/181 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL-QLVYNSPYFPNEFTLPFVI 131
L A +FDQIP P++ T+N LIRAYSSS + + L + + PN +T PF +
Sbjct: 73 LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132
Query: 132 KAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
KA + G+AIH + DL +S +L+ Y C L A +F + +D+V
Sbjct: 133 KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLV 192
Query: 187 SWNSMISGFVEGGFFEKAIE--LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+WN+M++G+ G + A+ L +M++ ++P+ T+V +L A++ L G V +
Sbjct: 193 AWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHA 252
Query: 245 H 245
+
Sbjct: 253 Y 253
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 103/204 (50%), Gaps = 8/204 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + + +++HA + + D + + L + A + ++ A +FD++ + +++
Sbjct: 353 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL--IDQAIALFDEMAVKDTVSYS 410
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
L+ Y + ++F++F ++ P+ T+ +I A + + G+ HG
Sbjct: 411 ALVSGYVQNGRAEEAFLVFKKM-QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 469
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ I N+LI YA CG + ++ VF M+ +D+VSWN+MI+G+ G ++A L
Sbjct: 470 RGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATAL 529
Query: 208 YREMEVENVKPDEVTMVVVLSACA 231
+ EM PD VT + +LSAC+
Sbjct: 530 FLEMNNLGFPPDGVTFICLLSACS 553
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 24/232 (10%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IHA L D F + ++ CA L A +F +P +L WN ++ Y+
Sbjct: 152 IHAG-LQADLFVST-ALLDMYVKCA-----CLPDAAHIFATMPARDLVAWNAMLAGYAHH 204
Query: 102 DEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHG------------ 148
+ L + PN TL ++ A+ G ++H
Sbjct: 205 GMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRN 264
Query: 149 ---MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
D +++ +L+ YA CG L A VF + ++ V+W+++I GFV +A
Sbjct: 265 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAF 324
Query: 206 ELYREMEVENVK-PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
L++ M + + ++ L ACA L G + + + K+G+ DLT
Sbjct: 325 LLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLT 376
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA--IELYREMEVENVKPDEVTMVV 225
G L+ A+ +F I DV ++N +I + A + LYR M V P+ T
Sbjct: 71 GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
L AC+ D G + H G++ DL
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADL 160
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+ +FD++P+ + +W +I YS S ++ +F+Q+ N + + A
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRL-NRSSFSSALSTCA 420
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
V +G+ +HG +E + N+L+ Y CG + A +F + KD+VSWN+
Sbjct: 421 DVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNT 480
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI+G+ GF E A+ + M+ E +KPD+ TMV VLSAC+
Sbjct: 481 MIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 98/199 (49%), Gaps = 10/199 (5%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF-L 112
D S + + T A S ++ AR++FD+ P +++TW ++ Y IQ+ M+
Sbjct: 249 DVVSWNTIITGYAQS--GKIDEARQLFDESPVQDVFTWTAMVSGY------IQNRMVEEA 300
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-DDLVISNSLIHFYAVCGDLA 171
+ +++ NE + ++ + + + + + + ++ N++I YA CG ++
Sbjct: 301 RELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKIS 360
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A +F + K+D VSW +MI+G+ + G +A+ L+ +ME E + + + LS CA
Sbjct: 361 EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCA 420
Query: 232 KKRDLEFGIWVSSHIEKNG 250
LE G + + K G
Sbjct: 421 DVVALELGKQLHGRLVKGG 439
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FD++P+ N +WN L+ AY + + ++ M+F + N FV K
Sbjct: 176 ARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKK-- 233
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
+ V+ R Q M D+V N++I YA G + A +F +DV +W +M+SG+
Sbjct: 234 KIVEAR--QFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGY 291
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
++ E+A EL+ +M N EV+ +L+ + +E
Sbjct: 292 IQNRMVEEARELFDKMPERN----EVSWNAMLAGYVQGERMEM 330
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 10/157 (6%)
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
+ ++ WN I +Y + ++ +F ++ P + + + +I R +F
Sbjct: 58 KCGDSDIKEWNVAISSYMRTGRCNEALRVFKRM----PRWSS-VSYNGMISGYLRNGEFE 112
Query: 142 VGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
+ + + M E DLV N +I Y +L A +F ++ ++DV SWN+M+SG+ + G
Sbjct: 113 LARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGC 172
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ A ++ M +N +V+ +LSA + +E
Sbjct: 173 VDDARSVFDRMPEKN----DVSWNALLSAYVQNSKME 205
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV- 130
+L AR++F+ +P+ ++ +WNT++ Y+ + + +F ++ + N +V
Sbjct: 141 NLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQ 200
Query: 131 ---IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
++ A + R A LV N L+ + + A F + +DVVS
Sbjct: 201 NSKMEEACMLFKSRENWA--------LVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVS 252
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENV 216
WN++I+G+ + G ++A +L+ E V++V
Sbjct: 253 WNTIITGYAQSGKIDEARQLFDESPVQDV 281
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 7/206 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++HA+ + + + S S A + SLE RK+F+++ +L +W +L+ AYS
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVAN-AYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYS 453
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
E ++ IF + PN+FT V+ + A GQ +HG+ + D
Sbjct: 454 QCSEWDKAIEIFSNM-RAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDK 512
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L+ YA CG L A VF I D VSW ++I+G + G + A++L+R M
Sbjct: 513 CIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQL 572
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGI 240
V+P+ VT + VL AC+ +E G+
Sbjct: 573 GVEPNAVTFLCVLFACSHGGLVEEGL 598
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 9/199 (4%)
Query: 68 STFSSLEYARKMFDQ--IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
S SL+ AR +F+ I WN +I Y S ++ +F ++ N Y + +
Sbjct: 318 SKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYL-DHY 376
Query: 126 TLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
T V A A +G+ +H G+ + + ISN++ + YA CG L VF
Sbjct: 377 TYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNR 436
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ +D++SW S+++ + + ++KAIE++ M E + P++ T VL +CA LE+G
Sbjct: 437 MEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYG 496
Query: 240 IWVSSHIEKNGIKMDLTFE 258
V I K G+ MD E
Sbjct: 497 QQVHGIICKVGLDMDKCIE 515
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 6/220 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQ K +H +L + F A S S ++ A ++FDQ+ Q N ++W LI
Sbjct: 85 KQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIA 144
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ + + F F ++ + FP++F +++ +G +H F
Sbjct: 145 GLAENGLFLDGFEFFCEM-QSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFT 203
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+S +L++ YA ++ +Y VF + + +VVSWN+MI+GF + A +L+ M
Sbjct: 204 SHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRM 263
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
E V PD T + V A RD+ VS + + G+
Sbjct: 264 MGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGV 303
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 13/215 (6%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALST--------FSSLEYARKMFDQIPQPNLY 89
Q +HA + + S SKL L T SL YAR++FD +P N
Sbjct: 131 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 190
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
TW+ LI + Q+F++F ++ F + ++ ++A A R+G+ +H +
Sbjct: 191 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 250
Query: 150 FED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
DL NSL+ YA G + A +F + KD VS+++++SG+V+ G E+A
Sbjct: 251 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEA 310
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++++M+ NV+PD TMV ++ AC+ L+ G
Sbjct: 311 FLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 345
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 103/204 (50%), Gaps = 8/204 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + + +++HA + + D + + L + A + ++ A +FD++ + +++
Sbjct: 238 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL--IDQAIALFDEMAVKDTVSYS 295
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
L+ Y + ++F++F ++ P+ T+ +I A + + G+ HG
Sbjct: 296 ALVSGYVQNGRAEEAFLVFKKM-QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 354
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ I N+LI YA CG + ++ VF M+ +D+VSWN+MI+G+ G ++A L
Sbjct: 355 RGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATAL 414
Query: 208 YREMEVENVKPDEVTMVVVLSACA 231
+ EM PD VT + +LSAC+
Sbjct: 415 FLEMNNLGFPPDGVTFICLLSACS 438
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
PN +T PF +KA + G+AIH + DL +S +L+ Y C L A +
Sbjct: 8 PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIE--LYREMEVENVKPDEVTMVVVLSACAKKR 234
F + +D+V+WN+M++G+ G + A+ L +M++ ++P+ T+V +L A++
Sbjct: 68 FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127
Query: 235 DLEFGIWVSSH 245
L G V ++
Sbjct: 128 ALAQGTSVHAY 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 24/232 (10%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IHA L D F + ++ CA L A +F +P +L WN ++ Y+
Sbjct: 37 IHAG-LQADLFVST-ALLDMYVKCA-----CLPDAAHIFATMPARDLVAWNAMLAGYAHH 89
Query: 102 DEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHG------------ 148
+ L + PN TL ++ A+ G ++H
Sbjct: 90 GMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRN 149
Query: 149 ---MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
D +++ +L+ YA CG L A VF + ++ V+W+++I GFV +A
Sbjct: 150 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAF 209
Query: 206 ELYREMEVENVK-PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
L++ M + + ++ L ACA L G + + + K+G+ DLT
Sbjct: 210 LLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLT 261
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 117/220 (53%), Gaps = 9/220 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H+ +L F ++ + L A + L ARK FD + + ++ W +LI Y
Sbjct: 342 KQLHSFLLKLGFERHLFATTALVDMYAKA--GCLADARKGFDCLQERDVALWTSLISGYV 399
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ + ++ +++ ++ + PN+ T+ V+KA + +G+ +HG F ++
Sbjct: 400 QNSDNEEALILYRRM-KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEV 458
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L Y+ CG L VF KDVVSWN+MISG G ++A+EL+ EM E
Sbjct: 459 PIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAE 518
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++PD+VT V ++SAC+ K +E G W ++ + I +D
Sbjct: 519 GMEPDDVTFVNIISACSHKGFVERG-WFYFNMMSDQIGLD 557
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 6/193 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S SL A KMFD N TW+ ++ YS + E +++ +F ++ +++ P+E+T+
Sbjct: 267 SKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRM-FSAGIKPSEYTI 325
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A + G+ +H FE L + +L+ YA G LA A F + +
Sbjct: 326 VGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQE 385
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DV W S+ISG+V+ E+A+ LYR M+ + P++ TM VL AC+ LE G V
Sbjct: 386 RDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQV 445
Query: 243 SSHIEKNGIKMDL 255
H K+G +++
Sbjct: 446 HGHTIKHGFGLEV 458
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 15/249 (6%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PN TL G + L + ++ HA ++ F D Y + L + +E
Sbjct: 116 PNAYTLA---GIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGL--VE 170
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
K+F +P+ N YTW+T++ Y++ +E I+ F +FL+ +++ V+
Sbjct: 171 DGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLR--EKEEGSDSDYVFTAVL 228
Query: 132 KAAARPVQFRVGQAIHGM-FEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
+ A + +G+ IH + ++ L+ +SN+L+ Y+ C L A +F G ++ +
Sbjct: 229 SSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSI 288
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+W++M++G+ + G +A++L+ M +KP E T+V VL+AC+ LE G + S +
Sbjct: 289 TWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFL 348
Query: 247 EKNGIKMDL 255
K G + L
Sbjct: 349 LKLGFERHL 357
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ TL + ++ G+A+HG + +N L++FYA CG LA A+ +
Sbjct: 12 PHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSI 71
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKA---IELYREMEVENVKPDEVTMVVVLSA 229
F I KDVVSWNS+I+G+ + G + ++L+REM +++ P+ T+ + A
Sbjct: 72 FNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKA 127
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 28/253 (11%)
Query: 16 NPTTLTVNNGHQRHPHFLTNQKQL---KRIHAQMLSTDFFFDPYSASKL---FTPCALST 69
NP T T+ H + Q+ L + +H Q++ T A+ L + C
Sbjct: 11 NPHTSTLLKKLTHH----SQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCG--- 63
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSF--MIFLQLVYNSPYFPNEFTL 127
L A +F+ I ++ +WN+LI YS + S+ M + + PN +TL
Sbjct: 64 --KLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTL 121
Query: 128 PFVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ KA + VG+ H + D+ + SL+ Y G + VF + +
Sbjct: 122 AGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPE 181
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELY----REMEVENVKPDEVTMVVVLSACAKKRDLEF 238
++ +W++M+SG+ G E+AI+++ RE E E D V VLS+ A +
Sbjct: 182 RNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKE-EGSDSDYV-FTAVLSSLAATIYVGL 239
Query: 239 GIWVSSHIEKNGI 251
G + KNG+
Sbjct: 240 GRQIHCITIKNGL 252
>gi|413938369|gb|AFW72920.1| hypothetical protein ZEAMMB73_491813 [Zea mays]
Length = 625
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 117/229 (51%), Gaps = 13/229 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQPNLYTWNTLIR 96
+++++HA+ + P A L CA+S + +E A +F+ + +P + +NTL+R
Sbjct: 60 EVRKVHARHIKLGLDRCPRYARPLLAACAVSGWPGGMELAASIFESLVEPEAFDYNTLMR 119
Query: 97 AYSSSD----EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
+ S +P + +++ + + P+ +T PFV+KA A+ + G+ +
Sbjct: 120 GHVSGGGGDRDPAAALRLYIDGL-EAGVSPDSYTFPFVLKACAQLAALQEGRQLQAHIVK 178
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKKDVVSWNSMISGFVEGGFFEKAI 205
F+ D + NSLI FY CG AMA F V ++ VSW+++++ + + G + + +
Sbjct: 179 LGFQHDEHVQNSLISFYGKCGAPAMARLAFDRVEAEERTTVSWSALLAAYTKAGLWGECL 238
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ M ++ +PDE +MV LSACA + G V + +N +++
Sbjct: 239 ASFGSMMLDGWRPDESSMVSALSACAHLGSFDAGRSVHCALLRNTARLN 287
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 16/218 (7%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L ++ +++ A ++ F D + + L + C AR FD++
Sbjct: 163 LAALQEGRQLQAHIVKLGFQHDEHVQNSLISFYGKCGAPAM-----ARLAFDRVEAEERT 217
Query: 90 T--WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH 147
T W+ L+ AY+ + + F ++ + + P+E ++ + A A F G+++H
Sbjct: 218 TVSWSALLAAYTKAGLWGECLASFGSMMLDG-WRPDESSMVSALSACAHLGSFDAGRSVH 276
Query: 148 GMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
+ ++ SL+ YA CG + A F + K ++++M+SG G
Sbjct: 277 CALLRNTARLNTIMLTSLLDMYAKCGSIEKAAAAFDAMDDKSAWAYSAMLSGLALHGDGR 336
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
KA++++ M E PD V VL+AC++ LE G+
Sbjct: 337 KALQVFDAMVREGHAPDAAAYVGVLNACSRAGLLEDGL 374
>gi|255546694|ref|XP_002514406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546503|gb|EEF48002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 436
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 8/205 (3%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
L+++H ++ + D Y S L S + E A +F+++ +L WN++I +
Sbjct: 174 LRQLHGNIIKSGLDSDVYVRSALID--IYSKWGESENALYVFNEMVTGDLIVWNSIIAGF 231
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIKAAARPVQFRVGQAIHG---MFEDDL 154
+ +++ ++ +F + N FP N+ L V++A +G+ +H + DL
Sbjct: 232 AQNNDGDEALNLFKSMKRNG--FPANQSALTSVLRACTGLALLELGRQVHVHVFKHDQDL 289
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V++N+L+ Y CG L A VF + +KDV+SW++MI+GF + G+ +A++L+ M+V
Sbjct: 290 VLNNALLDMYCKCGSLEDANYVFTRMVEKDVISWSTMIAGFAQNGYSREALKLFESMKVS 349
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
KP+ +T++ VL AC+ LE G
Sbjct: 350 GTKPNYITILGVLFACSHAGLLEAG 374
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 9/184 (4%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFT 126
F+ L+ A +FDQ+P+ N+ +W T+I A+S++ D+ ++ FL + PN +T
Sbjct: 105 FNLLDEALTLFDQMPERNVVSWTTMISAFSNAKLNDKALE----FLICMLREGVKPNVYT 160
Query: 127 LPFVIKAAARPVQFRV--GQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+++A R G I + D+ + ++LI Y+ G+ A VF + D
Sbjct: 161 YSSILRACDGVYNLRQLHGNIIKSGLDSDVYVRSALIDIYSKWGESENALYVFNEMVTGD 220
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
++ WNS+I+GF + ++A+ L++ M+ ++ + VL AC LE G V
Sbjct: 221 LIVWNSIIAGFAQNNDGDEALNLFKSMKRNGFPANQSALTSVLRACTGLALLELGRQVHV 280
Query: 245 HIEK 248
H+ K
Sbjct: 281 HVFK 284
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYC 175
+ + FT +IK G+ ++ ++ ++ + N L++ Y L A
Sbjct: 54 WADSFTYSELIKCCLARNAIEQGKQVYKHLSSNGYQPNIFLINMLLNMYVKFNLLDEALT 113
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F + +++VVSW +MIS F +KA+E M E VKP+ T +L AC +
Sbjct: 114 LFDQMPERNVVSWTTMISAFSNAKLNDKALEFLICMLREGVKPNVYTYSSILRACDGVYN 173
Query: 236 LEFGIWVSSHIEKNGIKMDL 255
L + +I K+G+ D+
Sbjct: 174 LR---QLHGNIIKSGLDSDV 190
>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
Length = 807
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR MFD+IP+P++ TWNTL+ Y + ++ +F ++ + + P+ TL ++ + +
Sbjct: 371 ARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQ-PDRTTLAVILSSCS 429
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R F +G+ +H + +D+ +++ LI Y+ CG + +A +F M+ ++DVV WNS
Sbjct: 430 RLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNS 489
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG E+A + ++M + P E + +++ CA+ + G + + + K+G
Sbjct: 490 MISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDG 549
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 35/237 (14%)
Query: 28 RHPHFLTNQKQLKRIHAQMLSTDFFF-----DPYSASKLFTPC-ALSTFSSLEY------ 75
R P + R+ A L+ D F + YS S L PC AL F +L +
Sbjct: 22 RKPSRSNAKAAHARVLAAGLAADTFLLNRLVELYSLSGL--PCHALRAFRALPHPNVYSY 79
Query: 76 ---------------ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
AR + ++P N +WNT+I A + S P ++ ++ Q +
Sbjct: 80 NAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMY-QGMLQEGL 138
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
P FTL V+ A G+ HG+ + + N L+ Y CG +A A
Sbjct: 139 APTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVR 198
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
+F + + VS+ +M+ G +GG + A+ L+ M ++ D V + VL ACA+
Sbjct: 199 LFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQ 255
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 14/207 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L N + K++H+ + D + AS L S + A +F+ + + ++ WN
Sbjct: 431 LGNFELGKQVHSASVRLLLHNDMFVASGLID--IYSKCGQVGIALIIFNMMTERDVVCWN 488
Query: 93 TLIRA---YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
++I +S S+E FL+ + + FP E + +I AR G+ +H
Sbjct: 489 SMISGLAIHSLSEEAFD----FLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQ 544
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
++ ++ + SLI YA G++ A F + K++V+WN MI G+ + GF EKA
Sbjct: 545 VLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKA 604
Query: 205 IELYREMEVENVKPDEVTMVVVLSACA 231
+EL+ M KPD VT + VL+ C+
Sbjct: 605 VELFEYMLTTKQKPDSVTFIAVLTGCS 631
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 33/205 (16%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ IHA ++ F D + + L A ++ A K+F+ + ++ +WN LI Y
Sbjct: 271 QSIHALVVRKGFGSDQHVGNSLVDLYAKGM--KMDEAIKVFESLSSVSIVSWNILITGYG 328
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS 159
+ M L+ + S + PNE T ++ A ++ R
Sbjct: 329 QLG-CYERAMEVLEFMQESGFEPNEVTYSNML---ASCIKAR------------------ 366
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
D+ A +F I K V +WN+++SG+ + ++ I+L+R M+ +NV+PD
Sbjct: 367 ---------DVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPD 417
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSS 244
T+ V+LS+C++ + E G V S
Sbjct: 418 RTTLAVILSSCSRLGNFELGKQVHS 442
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 19/189 (10%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++T C S+ A ++FD +P PN ++ ++ + + +F ++ +
Sbjct: 186 MYTKCG-----SVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARM-SRTGI 239
Query: 121 FPNEFTLPFVIKAAARPVQ--------FRVGQAIHGM-----FEDDLVISNSLIHFYAVC 167
+ + V+ A A+ ++ Q+IH + F D + NSL+ YA
Sbjct: 240 RVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKG 299
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
+ A VF + +VSWN +I+G+ + G +E+A+E+ M+ +P+EVT +L
Sbjct: 300 MKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNML 359
Query: 228 SACAKKRDL 236
++C K RD+
Sbjct: 360 ASCIKARDV 368
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 35/153 (22%)
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
+ + N L+ YS S P + F L P+ PN ++ I AA R
Sbjct: 44 DTFLLNRLVELYSLSGLPCHALRAFRAL----PH-PNVYSYNAAISAACRA--------- 89
Query: 147 HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
GDLA A + + ++ VSWN++I+ G +A+E
Sbjct: 90 ---------------------GDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALE 128
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+Y+ M E + P T+ VLSAC L+ G
Sbjct: 129 MYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 161
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 7/206 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++HA+ + + + S S A + SLE RK+F+++ +L +W +L+ AYS
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVAN-AYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYS 453
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
E ++ IF + PN+FT V+ + A GQ +HG+ + D
Sbjct: 454 QCSEWDKAIEIFSNM-RAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDK 512
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L+ YA CG L A VF I D VSW ++I+G + G + A++L+R M
Sbjct: 513 CIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQL 572
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGI 240
V+P+ VT + VL AC+ +E G+
Sbjct: 573 GVEPNAVTFLCVLFACSHGGLVEEGL 598
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 6/220 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQ K +H +L + F A S S ++ A ++FDQ+ Q N ++W LI
Sbjct: 85 KQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIA 144
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+ + + F F ++ + FP++F +++ +G +H F
Sbjct: 145 GLAENGLFLDGFEFFCEM-QSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFT 203
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+S +L++ YA ++ +Y VF + + +VVSWN+MI+GF + A +L+ M
Sbjct: 204 SHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRM 263
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
E V PD T + V A RD+ VS + + G+
Sbjct: 264 MGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGV 303
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 9/199 (4%)
Query: 68 STFSSLEYARKMFDQ--IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
S SL+ AR +F+ I WN +I Y S ++ +F ++ N Y + +
Sbjct: 318 SKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYL-DHY 376
Query: 126 TLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
T V A A +G+ +H G+ + + ISN++ + YA CG L VF
Sbjct: 377 TYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNR 436
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ +D++SW S+++ + + ++KAIE++ M E + P++ T VL +CA LE+G
Sbjct: 437 MEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYG 496
Query: 240 IWVSSHIEKNGIKMDLTFE 258
V I K G+ MD E
Sbjct: 497 QQVHGIICKVGLDMDKCIE 515
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 7/227 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T QL +I AQ++ +D S +KL ++ + R++F+++ +P+L+ +N
Sbjct: 25 TTLSQLLQIQAQLILHGIHYDLSSITKL--THKFFDLGAVAHVRQLFNKVSKPDLFLFNV 82
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
LIR +S + P S ++ L + P+ FT F I AA+R RVG +H D
Sbjct: 83 LIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVD 142
Query: 154 LVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
V SN +++ Y +A VF ++ ++D V WN+MISGF +FE +I ++
Sbjct: 143 GVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVF 202
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+M + D T+ VL+A A+ ++ G+ + K G+ D+
Sbjct: 203 VDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 112/205 (54%), Gaps = 14/205 (6%)
Query: 35 NQKQLKRIHAQM-LSTDFFFDPYSASKLFTP-CALSTFSSLEYARKMFDQIPQPNLYTWN 92
N QL R+ + L P ++ L T C L+ +++AR++FD+ P+ +L +WN
Sbjct: 329 NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLN---EVQFARQLFDESPEKSLASWN 385
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+I Y+ + ++ +F +++ P PN T+ ++ A A+ +G+ +HG+
Sbjct: 386 AMISGYTQNGLTDRAISLFQEMM---PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIK 442
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
E ++ +S +L+ YA CG + A +F ++ K+VV+WN+MI+G+ G ++A++
Sbjct: 443 SERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALK 502
Query: 207 LYREMEVENVKPDEVTMVVVLSACA 231
L+ EM + P VT + +L AC+
Sbjct: 503 LFYEMLQSGIPPTGVTFLSILYACS 527
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 10/176 (5%)
Query: 58 ASKLFTPCALS----TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
AS LF A+ F+ E ARK+FD +P+ + WNT+I +S + S +F+
Sbjct: 145 ASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVD 204
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG 168
++ F + TL V+ A A ++R+G I + D+ + LI Y+ CG
Sbjct: 205 MLDVGLSF-DSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCG 263
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
+F I + D++S+N+MISG+ E A+ L+RE+ + + T+V
Sbjct: 264 KSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLV 319
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C S R +FDQI QP+L ++N +I Y+ + E + +F +L+ +
Sbjct: 258 LYSKCGKSC-----KGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQR 312
Query: 121 FPNE-------FTLPFVIKAAARPVQ---FRVGQAIHGMFEDDLVISNSLIHFYAVCGDL 170
+ LPF +R +Q ++G + +S +L Y ++
Sbjct: 313 VNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPS------VSTALTTVYCRLNEV 366
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
A +F +K + SWN+MISG+ + G ++AI L++EM + + P+ VT+ +LSAC
Sbjct: 367 QFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSAC 425
Query: 231 AKKRDLEFGIWVSSHIE 247
A+ L G WV I+
Sbjct: 426 AQLGALSIGKWVHGLIK 442
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR FD++PQ + +W +I Y+ S ++ +F+++ + N T + A
Sbjct: 347 ARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERL-NRSTFTSTLSTCA 405
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ +HG E + N+L+ Y CG++ AY VF I +K+VVSWN+
Sbjct: 406 EIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNT 465
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI+G+ GF ++A+ L+ M+ + PD+VTMV VLSAC+
Sbjct: 466 MIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACS 506
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 39/214 (18%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+ ++L F+ +FT A+ + L+ AR++FD +P+ N +WN +I Y
Sbjct: 248 NGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGY 307
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISN 158
Q+ +F A P Q ++ N
Sbjct: 308 VQCKRMDQARELF----------------------EAMPCQ-------------NVSSWN 332
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
++I YA GD+A A F + ++D +SW ++I+G+ + G+ E+A+ L+ EM+ + +
Sbjct: 333 TMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERL 392
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+ T LS CA+ LE G V + K G++
Sbjct: 393 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLE 426
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
D S + + + C + +L AR +FDQ+P+ ++ +WN ++ Y+ + ++ IF +
Sbjct: 110 DLVSWNVMISGCV--RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDE 167
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED----DLVISNSLIHFYAVCGD 169
+ P + ++ + AA R+ A +FE +L+ N ++ Y
Sbjct: 168 M-------PCKNSISWNGMLAAYVQNGRIEDARR-LFESKADWELISWNCMMGGYVKRNR 219
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
L A +F + ++D VSWN+MISG+ + G +A L+ E V +V
Sbjct: 220 LVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV 266
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A ++F+ +P+ + +WN +I S+D+ F + QL P + + +I
Sbjct: 68 ALRLFNSMPRRSSISWNAMISGCLSNDK----FYLARQLFEKMPT-RDLVSWNVMISGCV 122
Query: 136 RPVQFRVGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
R R + + M E D+V N+++ YA G + A +F + K+ +SWN M++
Sbjct: 123 RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAA 182
Query: 195 FVEGGFFEKAIELY 208
+V+ G E A L+
Sbjct: 183 YVQNGRIEDARRLF 196
>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
Length = 613
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 5/170 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A K F+ +P NL +WN ++ Y + + +F +V + PN TL V+ +
Sbjct: 193 AIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCS 252
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
G+ IH + +L + SL+ Y CGDL+ A +F + +DVV+WN+
Sbjct: 253 NLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNA 312
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
MISG+ + G ++AI L+ M+ E V+P+ +T VVVL+AC +FGI
Sbjct: 313 MISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGI 362
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 106/238 (44%), Gaps = 25/238 (10%)
Query: 9 ISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFD--PYSASKLFTPCA 66
+S PR T + G+ R P L + + L FD P +
Sbjct: 41 VSTPRKTTATYNCLLAGYARAPGRLADARHL-------------FDRIPTPDVVSYNTLL 87
Query: 67 LSTFSS--LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
L F+S + AR++F +P ++ +WNT++ S S ++ ++FL + + N
Sbjct: 88 LCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNA 147
Query: 125 FTLPFVIKAAARPVQ--FRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
F + FR + ++D V+ +++ Y G++ A F +
Sbjct: 148 MVSGFACSGDMSTAEEWFR-----NAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPV 202
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFG 239
+++VSWN++++G+V+ + A+ L+R M E NV+P+ T+ VL C+ L FG
Sbjct: 203 RNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFG 260
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 116/207 (56%), Gaps = 12/207 (5%)
Query: 60 KLFTPCAL----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115
+LF AL + F +L A+K+F Q+ ++ +WN++I AY +D+P+ + F ++
Sbjct: 307 ELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQ 366
Query: 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCGD 169
N P+ TL + AA+ ++ +++HG + +VI N+++ YA G
Sbjct: 367 LNGLE-PDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGV 425
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLS 228
+ A+ VF +I KDVVSWN++ISG+ + G +AIE+YR M E +K ++ T V +L+
Sbjct: 426 IDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILA 485
Query: 229 ACAKKRDLEFGIWVSSHIEKNGIKMDL 255
A A L+ G+ + H+ K + +D+
Sbjct: 486 AYAHVGALQQGMRIHGHLIKTNLHLDV 512
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 119/221 (53%), Gaps = 10/221 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
KR+HA ++ + + + +L A + + +R FDQI + ++YTWN++I AY
Sbjct: 93 KRLHALLVVSGKIQSNFISIRLVNLYA--SLGDVSLSRGTFDQIQRKDVYTWNSMISAYV 150
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ ++ F QL+ + + + +T P V+KA V G+ IH F+ D+
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDV 207
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++ SLIH Y+ G + +A +F + +D+ SWN+MISG ++ G +A+++ EM +E
Sbjct: 208 FVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 267
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ D VT+ +L CA+ D+ + ++ K+G++ +L
Sbjct: 268 GINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFEL 308
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 5/190 (2%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ ++ A K+F+ IP ++ +WNTLI Y+ + ++ ++ + N+ T
Sbjct: 421 AKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTW 480
Query: 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
++ A A + G IHG D+ + LI Y CG L A C+F + +
Sbjct: 481 VSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPR 540
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+ V WN++IS G EKA++L+REM+ E VKPD VT + +LSAC+ ++ G W
Sbjct: 541 ESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWF 600
Query: 243 SSHIEKNGIK 252
+++ GIK
Sbjct: 601 FHLMQEYGIK 610
>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 760
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 12/248 (4%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
P+ TTL+V FL KQ IH + T+ D + S L S +E
Sbjct: 400 PDRTTLSVILSSCARLRFLEGGKQ---IHGVAIRTETSEDSHIVSGLIA--VYSECEKME 454
Query: 75 YARKMFDQ-IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
+FD I + ++ WN++I + ++ M+F ++ S PNE T V+ +
Sbjct: 455 ICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSVLLPNETTYAIVLGS 514
Query: 134 AARPVQFRVGQAIHGMFEDDLVISNSLIH-----FYAVCGDLAMAYCVFVMIGKKDVVSW 188
+R G+ HG +S+S + Y CG++ A F + +K+ V W
Sbjct: 515 CSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCKCGEIESARQFFDTVSRKNTVIW 574
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
N MI G+ G ++A++LYREM KPD +T V VL+AC+ ++ G+ + S +++
Sbjct: 575 NEMIHGYAHNGRGDEAVDLYREMISAGEKPDGITFVSVLTACSHSGLVDTGLEILSSMQR 634
Query: 249 N-GIKMDL 255
+ GI+ +L
Sbjct: 635 DHGIEPEL 642
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 10/213 (4%)
Query: 50 DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFM 109
D F+P + + A +E R++F+ IPQP++ WN ++ YS+ + ++
Sbjct: 329 DSGFEPNEVTCISILGACFRSGDVETGRRIFNTIPQPSVSAWNAMLSGYSNYEHYEEAIN 388
Query: 110 IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------EDDLVISNSLIHF 163
F Q+ + + P+ TL ++ + AR G+ IHG+ ED ++S LI
Sbjct: 389 NFRQMQFQN-LKPDRTTLSVILSSCARLRFLEGGKQIHGVAIRTETSEDSHIVS-GLIAV 446
Query: 164 YAVCGDLAMAYCVF-VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV-KPDEV 221
Y+ C + + C+F I + D+ WNSMISG KA+ L+R M +V P+E
Sbjct: 447 YSECEKMEICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSVLLPNET 506
Query: 222 TMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
T +VL +C++ L G + K+G D
Sbjct: 507 TYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSD 539
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 39/203 (19%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH+ L F + + + L A + + A +F ++P+ N+ +WN +I +
Sbjct: 255 KQIHSLALRRGFVGELHLNNSLLEIYAKN--KDMNGAELIFTEMPEVNVVSWNIMIAGFG 312
Query: 100 S---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
SD+ I+ +L+ + +S + PNE T ++ A R
Sbjct: 313 QEYRSDKSIE----YLKRMRDSGFEPNEVTCISILGACFRS------------------- 349
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
GD+ +F I + V +WN+M+SG+ +E+AI +R+M+ +N+
Sbjct: 350 -----------GDVETGRRIFNTIPQPSVSAWNAMLSGYSNYEHYEEAINNFRQMQFQNL 398
Query: 217 KPDEVTMVVVLSACAKKRDLEFG 239
KPD T+ V+LS+CA+ R LE G
Sbjct: 399 KPDRTTLSVILSSCARLRFLEGG 421
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 101/212 (47%), Gaps = 14/212 (6%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
R H + T + + + L + A F ++Y ++F+ + +PN ++ T+I +
Sbjct: 145 RCHGVAVKTGLDKNIFVGNALLSMYAKCGFM-VDYGVRVFESLSEPNEVSFTTVISGLAR 203
Query: 101 SDEPIQSFMIFLQLV-----YNSPYFPNEFTLPFVIKAAARPVQFR---VGQAIHGM--- 149
++ +++ +F + + N ++ + + +G+ IH +
Sbjct: 204 ENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPREGCDSLSEIYGNVLGKQIHSLALR 263
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F +L ++NSL+ YA D+ A +F + + +VVSWN MI+GF + +K+IE
Sbjct: 264 RGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQEYRSDKSIEY 323
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ M +P+EVT + +L AC + D+E G
Sbjct: 324 LKRMRDSGFEPNEVTCISILGACFRSGDVETG 355
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 91/187 (48%), Gaps = 11/187 (5%)
Query: 52 FFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS 107
FD S +++ A TF LE A ++FD +P+ ++ +WN +I ++
Sbjct: 49 LFDEMSLRDVYSWNAFLTFRCKVGDLEEACEVFDGMPERDVVSWNNMISVLVRKGFEEKA 108
Query: 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIH 162
++ ++V + P+ FTL V+ A ++ +G HG+ + ++ + N+L+
Sbjct: 109 LDVYGRMV-GDGFLPSRFTLASVLSACSKVQDGVIGMRCHGVAVKTGLDKNIFVGNALLS 167
Query: 163 FYAVCGDLA-MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV 221
YA CG + VF + + + VS+ ++ISG +A+ ++R M + V+ D V
Sbjct: 168 MYAKCGFMVDYGVRVFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCV 227
Query: 222 TMVVVLS 228
+ +LS
Sbjct: 228 CLSNILS 234
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 138 VQFRVGQAIHGMFED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
++F G +F++ D+ N+ + F GDL A VF + ++DVVSWN+MIS
Sbjct: 38 IEFGDGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEACEVFDGMPERDVVSWNNMIS 97
Query: 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
V GF EKA+++Y M + P T+ VLSAC+K +D G+ K G+
Sbjct: 98 VLVRKGFEEKALDVYGRMVGDGFLPSRFTLASVLSACSKVQDGVIGMRCHGVAVKTGLDK 157
Query: 254 DL 255
++
Sbjct: 158 NI 159
>gi|297791497|ref|XP_002863633.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309468|gb|EFH39892.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 460
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 114/216 (52%), Gaps = 14/216 (6%)
Query: 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTW 91
+ + +HA +L F +P + + F AL F L AR + ++I +P+L TW
Sbjct: 129 HRHGRALHAHVLK---FIEPVNHDR-FVQAALVGFYANCGELREARSLLERIREPDLATW 184
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MF 150
NTL+ AY++S+E +S L+L PNE +L +IK+ A +F G H +
Sbjct: 185 NTLLAAYANSEET-ESDEEVLKLFVRMQVRPNELSLVALIKSCANLGEFWGGVWAHVYLL 243
Query: 151 EDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+ +L + SLI FY+ CG L+ A VF + ++D+ +N+MI G GF ++ IE
Sbjct: 244 KKNLTLNQFVGTSLIDFYSKCGCLSFARQVFDEMSERDISCFNAMIRGLAVHGFGQEGIE 303
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
LY + + + PD T VV +SAC+ ++ G+ +
Sbjct: 304 LYNSLISQGLVPDNATFVVTISACSHSGLVDEGLQI 339
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 124/234 (52%), Gaps = 22/234 (9%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK+IHAQ+++ Y SKL LS+ L YA + QIP P+++ +NTLI
Sbjct: 23 QNLKQIHAQIITIGLSHHTYPLSKLL---HLSSTVCLSYALSILRQIPNPSVFLYNTLIS 79
Query: 97 AYSSSDEPIQS---FMIFLQLVYNSPYF--PNEFTLPFVIKAAARPVQF-RVGQAIHGMF 150
+ S+ Q+ F ++ Q++ + F PNEFT P + KA+ ++ R G+A+H
Sbjct: 80 SIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFETKWHRHGRALHAHV 139
Query: 151 -------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV---EGGF 200
D + +L+ FYA CG+L A + I + D+ +WN++++ + E
Sbjct: 140 LKFIEPVNHDRFVQAALVGFYANCGELREARSLLERIREPDLATWNTLLAAYANSEETES 199
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E+ ++L+ M+ V+P+E+++V ++ +CA + G+W ++ K + ++
Sbjct: 200 DEEVLKLFVRMQ---VRPNELSLVALIKSCANLGEFWGGVWAHVYLLKKNLTLN 250
>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 990
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNL 88
FL Q K++HA + + + D + +S ++ C S+ ++A FD IP P+
Sbjct: 529 FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCG--DMSAAQFA---FDSIPVPDD 583
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
W T+I + E ++F +F Q+ P+EFT+ + KA++ G+ IH
Sbjct: 584 VAWTTMISGCIENGEEERAFHVFSQMRLMG-VLPDEFTIATLAKASSCLTALEQGRQIHA 642
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
+D + SL+ YA CG + AYC+F I ++ +WN+M+ G + G ++
Sbjct: 643 NALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKE 702
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACA 231
++L+++M+ +KPD+VT + VLSAC+
Sbjct: 703 TLQLFKQMKSLGIKPDKVTFIGVLSACS 730
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 13/222 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H + + D + ++ L A S ++ A +F++ +L WN ++ Y+
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALID--AYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYT 493
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S + ++ +F L++ ++FTL V K G+ +H ++ DL
Sbjct: 494 QSHDGHKTLKLF-ALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+S+ ++ Y CGD++ A F I D V+W +MISG +E G E+A ++ +M +
Sbjct: 553 WVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLM 612
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
V PDE T+ + A + LE G I N +K++ T
Sbjct: 613 GVLPDEFTIATLAKASSCLTALEQG----RQIHANALKLNCT 650
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 87/166 (52%), Gaps = 11/166 (6%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI-----QSFMIFLQLVYNSPYFP 122
S SL YAR++FD++P +L +WN+++ AY+ S E + Q+F++F +++ +
Sbjct: 85 SKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLF-RILRQDVVYT 143
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
+ TL ++K ++ HG + D ++ +L++ Y G + +F
Sbjct: 144 SRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLF 203
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
+ +DVV WN M+ ++E GF E+AI+L + P+E+T+
Sbjct: 204 EEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 97/197 (49%), Gaps = 11/197 (5%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C L F +AR +FD + + +L +WN++I + + +++ +F+QL+ P++
Sbjct: 361 CKLRKFG---FARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLL-RCGLKPDQ 416
Query: 125 FTLPFVIKAAAR-PVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFV 178
+T+ V+KAA+ P + + +H D +S +LI Y+ + A +F
Sbjct: 417 YTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFE 476
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
D+V+WN+M++G+ + K ++L+ M + + D+ T+ V C +
Sbjct: 477 R-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQ 535
Query: 239 GIWVSSHIEKNGIKMDL 255
G V ++ K+G +DL
Sbjct: 536 GKQVHAYAIKSGYDLDL 552
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
++ T ++ A + +GQ +H M + L +SNSLI+ Y A VF
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ ++D++SWNS+I+G + G +A+ L+ ++ +KPD+ TM VL A + L
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS---LP 430
Query: 238 FGIWVSSHIEKNGIKMD 254
G+ +S + + IK++
Sbjct: 431 EGLSLSKQVHVHAIKIN 447
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 119/227 (52%), Gaps = 11/227 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYS-ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
Q+K++HA + + ++ + A+KL + YA +FD++PQ N +W+ +I
Sbjct: 1097 QIKQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYA--LFDEMPQKNPVSWSIMIG 1154
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMF 150
+ E +Q + F +L+ N P+ +TLPFVIKA V +G+ IH G+
Sbjct: 1155 GFVKVGEFMQCYKTFKELIRNGVQ-PDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLH 1213
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D V + +L+ YA C + A +F ++ KD+V+W MI G+ E G ++++ L+
Sbjct: 1214 LDHFVCA-ALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDH 1272
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ E PD++ MV +++ACAK + +V ++ +N +D+
Sbjct: 1273 LREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVIL 1319
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 110/223 (49%), Gaps = 15/223 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
IH +L D + + L + C + +E A+ +FD +P +L TW +I Y
Sbjct: 1203 IHCVVLKYGLHLDHFVCAALVDMYAKCKV-----IEDAKLLFDVMPSKDLVTWTVMIGGY 1257
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDD 153
+ +S ++F L + P++ + ++ A A+ + +H F D
Sbjct: 1258 AECGNAKESLVLFDHL-REEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLD 1316
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+++ ++I YA CGD+ A +F + K+V+SW++MI+ + G +KA+EL+ M
Sbjct: 1317 VILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLS 1376
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI-EKNGIKMDL 255
+ P+ +T V +L AC+ +E G+ + S + E G++ D+
Sbjct: 1377 SGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDI 1419
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 104/192 (54%), Gaps = 7/192 (3%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
DP+ S + +L+ AR++FD +P+ + WN +I Y+ +P ++ +F +
Sbjct: 182 DPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRR 241
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED------DLVISNSLIHFYAVC 167
++ +S P+E T+ V+ A A+ G+ +H ++ ++ ++ +L+ Y C
Sbjct: 242 MLRSSAE-PDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKC 300
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G L A VF IG KD+V WN+MI+G+ G KA+E++ ++ + + P ++T + +L
Sbjct: 301 GSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLL 360
Query: 228 SACAKKRDLEFG 239
+AC+ +E G
Sbjct: 361 NACSHSGLVEEG 372
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 60/96 (62%)
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+V +++ YA G L A +F + +KD + WN+MI G+ + G +A++L+R M
Sbjct: 185 VVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLR 244
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+ +PDEVT+V+VLSA A+ +E G W+ S+++ +
Sbjct: 245 SSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNS 280
>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 713
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 114/220 (51%), Gaps = 9/220 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H+ +L F ++ + L A + L ARK FD + + ++ W +LI Y
Sbjct: 331 KQLHSFLLKLGFERHLFATTALVDMYAKA--GCLADARKGFDCLQERDVALWTSLISGYV 388
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ + ++ +++ ++ + PN+ T+ V+KA + +G+ +HG F ++
Sbjct: 389 QNSDNEEALILYRRM-KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEV 447
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L Y CG L VF KDVVSWN+MISG G ++A+EL+ EM E
Sbjct: 448 PIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAE 507
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+PD+VT V ++SAC+ K +E G W H+ + +D
Sbjct: 508 GTEPDDVTFVNIISACSHKGFVERG-WSYFHMMSDQFGLD 546
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 6/193 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S SL A KMFD N TW+ ++ YS + E +++ +F ++ +++ P+E+T+
Sbjct: 256 SKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRM-FSAGIKPSEYTI 314
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A + G+ +H FE L + +L+ YA G LA A F + +
Sbjct: 315 VGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQE 374
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DV W S+ISG+V+ E+A+ LYR M+ + P++ TM VL AC+ LE G V
Sbjct: 375 RDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQV 434
Query: 243 SSHIEKNGIKMDL 255
H K+G +++
Sbjct: 435 HGHTIKHGFGLEV 447
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA---IELYREMEV 213
+N L++FYA CG LA A+ +F I KDVVSWNS+I+G+ + G + ++L+REM
Sbjct: 54 ANVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRA 113
Query: 214 ENVKPDEVTMVVVLSA 229
+++ P+ T+ + A
Sbjct: 114 QDILPNAYTLAGIFKA 129
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVF 177
+++ V+ + A V +G+ IHG+ + + +SN+L+ Y+ C L A +F
Sbjct: 209 SDYVFTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMF 268
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
G ++ ++W++M++G+ + G +AI+L+ M +KP E T+V VL+AC+
Sbjct: 269 DSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACS 322
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 23/188 (12%)
Query: 12 PRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALS 68
P T L H +H + + + +HAQ++ T A+ L + C
Sbjct: 12 PFSHTSTLLKALTHHSQHRNLVAG----RAVHAQIIRTGTSTCTQHANVLVNFYAKCG-- 65
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL---VYNSPYFPNEF 125
L A +F+ I ++ +WN+LI Y S + I S +QL + PN +
Sbjct: 66 ---QLAKAHSIFNAIICKDVVSWNSLITGY-SQNGGISSSHTVMQLFREMRAQDILPNAY 121
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCG--DLAMAYCVFV 178
TL + KA + VG+ H + D+ + SL+ Y G L M Y F
Sbjct: 122 TLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLKYLYMVYYGFW 181
Query: 179 MIGKKDVV 186
+ KKDV+
Sbjct: 182 LCYKKDVL 189
>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 700
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 102/199 (51%), Gaps = 14/199 (7%)
Query: 41 RIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++HAQ+L FD + S L F C + ARK+FD + N+ W +L+ A
Sbjct: 248 QVHAQLLKGGLTFDVFVGSMLVDMFGKCG-----DVLSARKVFDGLQNRNVVVWTSLMTA 302
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----D 152
Y + E + + L + NEFT ++ A A R G +H E +
Sbjct: 303 YLQNGE-FEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKN 361
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
+++ N+LI+ Y+ CG + +Y VF + +D+++WN+MI G+ + G ++A+ L+++M
Sbjct: 362 RVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDML 421
Query: 213 VENVKPDEVTMVVVLSACA 231
P+ VT V VLSACA
Sbjct: 422 SAGECPNHVTFVGVLSACA 440
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 30/246 (12%)
Query: 34 TNQKQL---KRIHAQML-----STDFFFDPY------SASKLFTPCALSTFSSLEYARKM 79
N K L K IH Q+L ST + + S L+ C S L AR +
Sbjct: 23 ANTKNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKC-----SKLRLARYL 77
Query: 80 FDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139
FD++ ++ ++N L+ Y S E ++ +F +V +S Y PNE+ V+ A A +
Sbjct: 78 FDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMV-SSLYQPNEYVFTTVLSACAHSGR 136
Query: 140 FRVGQAIHG-MFEDDLV----ISNSLIHFYAVCGDLAMAYCVFV-----MIGKKDVVSWN 189
G HG +F+ LV + +SL+H Y+ C + +A V + D +N
Sbjct: 137 VFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYN 196
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
S+++ VE G +A+E+ M E V D VT V V+ C + RDL G+ V + + K
Sbjct: 197 SVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKG 256
Query: 250 GIKMDL 255
G+ D+
Sbjct: 257 GLTFDV 262
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 89 YTWNTLIRAYSSSDE-----PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG 143
+ +N+++ A S + M+ +V++S + + L I+ +Q
Sbjct: 193 FCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVH-A 251
Query: 144 QAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
Q + G D+ + + L+ + CGD+ A VF + ++VV W S+++ +++ G FE+
Sbjct: 252 QLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEE 311
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+ L M+ E +E T V+L+A A L G + + +EK GIK
Sbjct: 312 TLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIK 360
>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
Length = 716
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 96/172 (55%), Gaps = 6/172 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L++AR +FD++ +L W T+I Y+ + P+ + +FL + + PN T V+
Sbjct: 317 LDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRF-ANIAPNSVTTATVLS 375
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A+A+ +G++IHG+ + V+ N+L+ YA C ++ A +F I KDVV+
Sbjct: 376 ASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVA 435
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
WNSMISG+ E + A+ L+++M ++ PD +++V LSA DL G
Sbjct: 436 WNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIG 487
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 9/221 (4%)
Query: 39 LKRIHAQMLS--TDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
L+ +HA++L+ A C + L AR +FD P+P+ Y++ ++
Sbjct: 78 LRVLHARLLTHPQGLLLGSLRARTKLLSC-YAALGDLASARMVFDGTPRPDAYSYGAMLW 136
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPY--FPNEFTLPFVIKAAARPVQFRVGQAIH----GMF 150
++ + + + P ++F L +KA R ++ G+++H +
Sbjct: 137 CLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVG 196
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
D + NSL+ YA DL A VF I ++VVSW SMISG V+ GF + L+ +
Sbjct: 197 GADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNK 256
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251
M +NV P E T+ V++AC+ L G W+ + K G+
Sbjct: 257 MRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGL 297
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY-NSPYFPNEFTLPFVI 131
LE ARK+F++IP N+ +W ++I + ++F ++ N P P+E+T+ VI
Sbjct: 216 LECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVP--PSEYTIATVI 273
Query: 132 KAAARPVQFRVGQAIHGMFEDDLVISNS-----LIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A + G+ +HG ++SNS L+ Y CG+L A CVF + D+V
Sbjct: 274 TACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLV 333
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
W +MI G+ + G A+ L+ + N+ P+ VT VLSA A+ RDL G
Sbjct: 334 LWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLG 386
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A ++F +I ++ WN++I Y+ ++ + M+F Q+ P+ ++ + A+
Sbjct: 421 ADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSS-PDAISVVNALSASV 479
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G++IHG F ++ + +L++ Y CGDL A VF + ++ V+W +
Sbjct: 480 CLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCA 539
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI G+ G +I L+ EM + V P+++ +LS C+
Sbjct: 540 MIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCS 580
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 109/202 (53%), Gaps = 11/202 (5%)
Query: 67 LSTFSSLEY---ARKMFDQIPQ--PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
++ +SS Y AR + D P+ + +WNT+I Y + P ++ F Q+
Sbjct: 135 INMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVML 194
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCV 176
++ TL + A AR +VG+ H + FE + + +SLI YA CG + A +
Sbjct: 195 -DDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRI 253
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + ++ V W SMISG+ + G ++AI+L+R+M++ VK D+ T+ V+S+C + L
Sbjct: 254 FDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGAL 313
Query: 237 EFGIWVSSHIEKNGIKMDLTFE 258
+ G +V ++ + +G+ D++ +
Sbjct: 314 DLGRYVHAYCDIHGLGKDISVK 335
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 9/206 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K HA +++ F + Y S L + + +E AR++FD +P N W ++I Y+
Sbjct: 216 KLCHALLVTNGFEINCYMGSSLIS--MYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYT 273
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DDL 154
+ ++ +F + ++ T+ V+ + + +G+ +H + D+
Sbjct: 274 QLGQSKEAIKLFRDMQIAGVKV-DDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDI 332
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ NSLI Y+ CGD+ AY +F + K+D SW +I GF G +A++L+ +ME E
Sbjct: 333 SVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQMEEE 392
Query: 215 -NVKPDEVTMVVVLSACAKKRDLEFG 239
V P+E+T + VL++C+ +E G
Sbjct: 393 GGVMPNEITFLGVLTSCSHGGLVEQG 418
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 96/176 (54%), Gaps = 10/176 (5%)
Query: 92 NTLIRAYSSSDEPIQSF--MIFLQLVYNSPYFPNEFTLPFVIKA-AARPVQFRVGQAIHG 148
NTLIRA+++S P F L+ S PN+FT PF++KA AA P VG H
Sbjct: 97 NTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHA 156
Query: 149 M-----FEDDLVISNSLIHFYAVCGD--LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
F D +SN+LIH Y+ G L A VF + K VV+W++MI G+V GG
Sbjct: 157 AALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLS 216
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
A+ L+REM+ V+PDEVT++ VL+A A LE WV +E+ GI +T
Sbjct: 217 SDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTL 272
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 6/194 (3%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSD 102
HA L F D Y ++ L + L AR +FD++ + ++ TW+ +I Y
Sbjct: 155 HAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGG 214
Query: 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVIS 157
+ +F ++ S P+E T+ V+ AAA + + + E + + +
Sbjct: 215 LSSDAVGLFREM-QASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTLC 273
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
N+LI A CGD+ A VF + ++ VVSW S+I G ++A+ ++ M+ V+
Sbjct: 274 NALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVR 333
Query: 218 PDEVTMVVVLSACA 231
PD+V + VL+AC+
Sbjct: 334 PDDVVFIGVLTACS 347
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 115/216 (53%), Gaps = 11/216 (5%)
Query: 51 FFFDPYSASKLFTPCALST----FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQ 106
+ FD + T A+ T LE AR+ FD +P+ ++ +WN ++ Y+ + +
Sbjct: 184 WLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEE 243
Query: 107 SFMIFLQLVYNSPYFPNEFTLPFVIKAAARP----VQFRVGQAIH-GMFEDDLVISNSLI 161
+ +F ++V N+ P+E T VI A + + + + +H + + + +L+
Sbjct: 244 ALRLFDEMV-NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALL 302
Query: 162 HFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDE 220
YA GDL A +F + ++VV+WNSMI+G+ + G AIEL++EM + + PDE
Sbjct: 303 DMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDE 362
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
VTMV V+SAC LE G WV + +N IK+ ++
Sbjct: 363 VTMVSVISACGHLGALELGNWVVRFLTENQIKLSIS 398
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ F L+ ARK+F+ +P N+ TWN++I Y+ + + + +F +++ P+E T+
Sbjct: 306 AKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTM 365
Query: 128 PFVIKAAARPVQFRVGQ-AIHGMFEDDLVIS----NSLIHFYAVCGDLAMAYCVFVMIGK 182
VI A +G + + E+ + +S N++I Y+ CG + A VF +
Sbjct: 366 VSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMAT 425
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+DVVS+N++ISGF G +AI L M+ ++PD VT + VL+AC+ LE G
Sbjct: 426 RDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEG 482
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 14/210 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
+ N L+++HAQ++ Y + L C + Y +F+ PN++ +
Sbjct: 11 VGNFNHLRQLHAQIIHNSLHHHNYWVALLINHCT-RLRAPPHYTHLLFNSTLNPNVFVFT 69
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP---VQFRVGQAIHGM 149
+++R YS + + +++ Q+ P+ F P +IK+A V + HG
Sbjct: 70 SMLRFYSHLQDHAKVVLMYEQM-QGCGVRPDAFVYPILIKSAGTGGIGFHAHVLKLGHG- 127
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG--KKDVVSWNSMISGFVEGGFFEKAIEL 207
D + N++I YA G + A VF I ++ V WN+M+SG+ + +A L
Sbjct: 128 --SDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWL 185
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ M NV +T +++ AK +DLE
Sbjct: 186 FDVMPERNV----ITWTAMVTGYAKVKDLE 211
>gi|124359403|gb|ABN05862.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 460
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 115/220 (52%), Gaps = 13/220 (5%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H T + DP ++ + + A F +E AR++FD +P + TWN++I AY
Sbjct: 87 QLHCLAFITGSYTDPIVSNSIISMYA--KFFDIESARQVFDTMPHRDTITWNSMINAYLQ 144
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ--FRVGQAIHGM--------F 150
+ +++ + L+ Y + P L ++ R + +R+G+ IHG+
Sbjct: 145 NGLLVEALQM-LKDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRI 203
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ + +S + + FY CGD MA VF + K+ VSW ++ISG ++ A+ YRE
Sbjct: 204 QHSVFLSTAFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYRE 263
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
M+VE V P+ VT++ +L+ACA+ +++G + + + G
Sbjct: 264 MQVEGVSPNRVTLIALLAACARPGFVKYGKEIHGYAFRRG 303
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 7/186 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FD++ N +W +I +++ + + + ++ PN TL ++ A A
Sbjct: 226 ARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVS-PNRVTLIALLAACA 284
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG-DLAMAYCVFVMIGKKDVVSWN 189
RP + G+ IHG F+ S +LI+ Y CG L +A +F +DVV W+
Sbjct: 285 RPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVVLWS 344
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
S+I + G +KA++L+ +M E +P+ VT++ V+SAC + G + +I K
Sbjct: 345 SIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYILKF 404
Query: 250 GIKMDL 255
GI +
Sbjct: 405 GIGFSI 410
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 12/196 (6%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDF-FFDPYSASKLFTPCALSTFSSL 73
PN TL P F+ K K IH F +S + ++ C SL
Sbjct: 271 PNRVTLIALLAACARPGFV---KYGKEIHGYAFRRGFDSCHSFSPALIYLYCECG--QSL 325
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
A ++F+ ++ W+++I +Y+ E ++ +F ++ PN TL VI A
Sbjct: 326 HLAERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETE-PNYVTLLAVISA 384
Query: 134 AARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
F+ G IHG + + N+LI+ YA CG L + +F+ + +D V+W
Sbjct: 385 CTNLSSFKHGGVIHGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTW 444
Query: 189 NSMISGFVEGGFFEKA 204
NSMIS + G+ E+A
Sbjct: 445 NSMISAYGLHGYGEQA 460
>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
Length = 645
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 111/236 (47%), Gaps = 20/236 (8%)
Query: 15 PNPTTLTVN---NGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPY---SASKLFTPCALS 68
PNP+ LT+ R PH L +QL HA+ L +P+ S L+ C L
Sbjct: 66 PNPSHLTIPIALKSASRLPHPLRAGEQL---HARSLKLPSHTNPHVLTSLLSLYAKCGL- 121
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
L A+++FD++P P+ W LI AY + + ++ + N P+ FT
Sbjct: 122 ----LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG-MRPDSFTAV 176
Query: 129 FVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V+ A AR G+ + E + V ++ + + Y CG++A A VF + K
Sbjct: 177 RVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHK 236
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
D V+W +M+ G+ G +A++L+ M+ E +KPD + LSAC + L+ G
Sbjct: 237 DAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLG 292
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 11/183 (6%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F +A L+ C + AR++FD++ + W ++ Y+S+ P ++ +FL
Sbjct: 208 FVATAAVDLYVKCG-----EMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFL 262
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-QAIHGM----FEDDLVISNSLIHFYAVC 167
+ P+ + + + A R +G QAI + F D+ V+ +LI YA C
Sbjct: 263 AMQAEG-MKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKC 321
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G A+ VF + KKD++ WN+MI G G + A L +ME VK ++ T + +L
Sbjct: 322 GSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLL 381
Query: 228 SAC 230
+C
Sbjct: 382 CSC 384
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 122 PNEFTLPFVIKAAAR-PVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYC 175
P+ T+P +K+A+R P R G+ +H + + SL+ YA CG L A
Sbjct: 68 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 127
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + V W ++I+ +++ G +A+ + R ++PD T V VL+ACA+ D
Sbjct: 128 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 187
Query: 236 LEFGIWVSSHIEKNGI 251
L G V E+ G+
Sbjct: 188 LATGETVWRAAEQEGV 203
>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial; Flags: Precursor
gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 787
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 8/196 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++H +++ D + L C +L A K+FD +P +L W+TL+ +
Sbjct: 122 KVHGRIIKGGVDDDAVIETSLL--CMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLE 179
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLV 155
+ E +++ +F +V + P+ T+ V++ A R+ +++HG MF+ D
Sbjct: 180 NGEVVKALRMFKCMV-DDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDET 238
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ NSL+ Y+ CGDL + +F I KK+ VSW +MIS + G F EKA+ + EM
Sbjct: 239 LCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSG 298
Query: 216 VKPDEVTMVVVLSACA 231
++P+ VT+ VLS+C
Sbjct: 299 IEPNLVTLYSVLSSCG 314
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 5/174 (2%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+ N+ WN+LI Y+ IQ+ +F Q+V P+ FTL I A +
Sbjct: 365 VSDRNIVAWNSLISLYAHRGMVIQALGLFRQMV-TQRIKPDAFTLASSISACENAGLVPL 423
Query: 143 GQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
G+ IHG D + NSLI Y+ G + A VF I + VV+WNSM+ GF +
Sbjct: 424 GKQIHGHVIRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQN 483
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
G +AI L+ M ++ +EVT + V+ AC+ LE G WV + +G+K
Sbjct: 484 GNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK 537
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 109/228 (47%), Gaps = 19/228 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +H Q+ F D + L T S L + ++F++I + N +W +I +Y+
Sbjct: 222 RSVHGQITRKMFDLDETLCNSLLT--MYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYN 279
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---------F 150
+ ++ F +++ S PN TL V+ + R G+++HG +
Sbjct: 280 RGEFSEKALRSFSEMI-KSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNY 338
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E +S +L+ YA CG L+ V ++ +++V+WNS+IS + G +A+ L+R+
Sbjct: 339 ES---LSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQ 395
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
M + +KPD T+ +SAC + G + H+ I+ D++ E
Sbjct: 396 MVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHV----IRTDVSDE 439
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 10/228 (4%)
Query: 37 KQLKRIHAQMLSTDFFF-DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+ + ++HA +L T DP +KL A S + +R +F+ P P+ + + LI
Sbjct: 15 RLVSQLHAHLLVTGRLRRDPLPVTKLIESYAF--MGSPDSSRLVFEAFPYPDSFMYGVLI 72
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ-FRVGQAIHGMF---- 150
+ + ++ +LV + ++F P V++A A + VG +HG
Sbjct: 73 KCNVWCHLLDAAIDLYHRLVSETTQI-SKFVFPSVLRACAGSREHLSVGGKVHGRIIKGG 131
Query: 151 -EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+DD VI SL+ Y G+L+ A VF + +D+V+W++++S +E G KA+ +++
Sbjct: 132 VDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFK 191
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M + V+PD VTM+ V+ CA+ L V I + +D T
Sbjct: 192 CMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETL 239
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 12/206 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH ++ TD D + + L S S++ A +F+QI ++ TWN+++ +S
Sbjct: 425 KQIHGHVIRTDVS-DEFVQNSLID--MYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFS 481
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDD 153
+ +++ +F +Y+S NE T VI+A + G+ +H G+ D
Sbjct: 482 QNGNSVEAISLF-DYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGL--KD 538
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
L +LI YA CGDL A VF + + +VSW+SMI+ + G AI + +M
Sbjct: 539 LFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVE 598
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFG 239
KP+EV + VLSAC +E G
Sbjct: 599 SGTKPNEVVFMNVLSACGHSGSVEEG 624
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 114/227 (50%), Gaps = 14/227 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+++H ++ +P + L + C + A+ +FD++P+ N+ TW LI
Sbjct: 217 QKVHMEIAKAGLELEPRVGTSLVGMYAKCG-----DISKAQVIFDKLPEKNVVTWTLLIA 271
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
Y+ + + + L+ + + PN+ T +++ P+ G+ +H +
Sbjct: 272 GYAQQGQ-VDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYG 330
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
++ + N+LI Y CG L A +F + +DVV+W +M++G+ + GF ++AI+L+R M
Sbjct: 331 REIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRM 390
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ + +KPD++T L++C+ L+ G + + G +D+ +
Sbjct: 391 QQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ 437
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 116/223 (52%), Gaps = 8/223 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + +Q + +HA +L + + Y + L + + SL AR++FD I N+ +W
Sbjct: 109 LRSLEQGREVHAAILKSGIQPNRYLENTLLS--MYAKCGSLTDARRVFDGIRDRNIVSWT 166
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----- 147
+I A+ + ++ ++++ + + + + P++ T ++ A P +VGQ +H
Sbjct: 167 AMIEAFVAGNQNLEAYKCY-ETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAK 225
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
E + + SL+ YA CGD++ A +F + +K+VV+W +I+G+ + G + A+EL
Sbjct: 226 AGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALEL 285
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+M+ V P+++T +L C LE G V +I ++G
Sbjct: 286 LEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSG 328
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 14/199 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H ++ + + + + + L T L+ ARK+F +P ++ TW ++ Y+
Sbjct: 318 KKVHRYIIQSGYGREIWVVNALIT--MYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYA 375
Query: 100 S---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
DE I F Q P++ T + + + P + G++IH +
Sbjct: 376 QLGFHDEAIDLFRRMQQ----QGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYS 431
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+ + ++L+ YA CG + A VF + +++VV+W +MI+G + G +A+E + +M
Sbjct: 432 LDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQM 491
Query: 212 EVENVKPDEVTMVVVLSAC 230
+ + +KPD+VT VLSAC
Sbjct: 492 KKQGIKPDKVTFTSVLSAC 510
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 130 VIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
+++ AR G+ +H + + + N+L+ YA CG L A VF I ++
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRN 161
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+VSW +MI FV G +A + Y M++ KPD+VT V +L+A L+ G V
Sbjct: 162 IVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHM 221
Query: 245 HIEKNGIKMD 254
I K G++++
Sbjct: 222 EIAKAGLELE 231
>gi|302785790|ref|XP_002974666.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
gi|300157561|gb|EFJ24186.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
Length = 921
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 14/228 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + ++ K++H ++ + D + L A LE +R++F+ + + + TWN
Sbjct: 12 LKDMERGKKVHRRIRESVARVDTVLQNALLNLYA--KCGDLEESRRIFEAMERRTVATWN 69
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-- 150
T+I AY D ++ F ++ ++P P+ T V+ A P G+AIH
Sbjct: 70 TMITAYVQHDFFQEALEAFRRM--DAP--PSSITFTSVLGACCSPDDLETGKAIHRQIGA 125
Query: 151 -----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
+ D ++ NSL+ Y CG L A VF I +K+ SW +MI+ + + G+ +AI
Sbjct: 126 SSPQIQADEILQNSLVTMYGKCGSLEDAERVFHGIRRKNAFSWTAMITAYAQNGYERRAI 185
Query: 206 ELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
E++ +M E V+PD +T VL+AC+ DLE G+ + + I G++
Sbjct: 186 EVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMRIHALIRSKGVE 233
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 9/185 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SL R+MFD++P + TW T+I AY+ +++ L+L + P++ L V
Sbjct: 350 GSLVGTREMFDRMPHRTVVTWTTMIAAYNQRGYSMEA----LELYHCMDIEPDDIALSNV 405
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
++A +R G+A+H FE L++ L+ Y CGDLA A F +DV
Sbjct: 406 LQACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFDGFKARDV 465
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+SW S+I+ + F +A+E++ ME+E V+P+ +T V+ AC++ L G + S
Sbjct: 466 ISWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALHSR 525
Query: 246 IEKNG 250
+ G
Sbjct: 526 VVATG 530
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 11/210 (5%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + + + IH + S+DF+ D ++ L + LE AR +FDQ+ + N +W
Sbjct: 614 LEDVSRARAIHGVIKSSDFYPDLVLSNVLMN--VYAKCGELEEARLVFDQMTEKNEVSWT 671
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
T+I Y+ + P ++ L+L PN VI + A GQ +H D
Sbjct: 672 TMIGGYAQNGRPAEA----LELYKAMDVQPNFIAFVPVISSCADLGALVEGQRVHARLSD 727
Query: 153 -----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+ VI +L++ YA CG L +A F D +WNSM + + + G + +EL
Sbjct: 728 AGLQNNEVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNSMATAYAQFGHGSQVLEL 787
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLE 237
YREM ++ V+P+ +T++ VL AC+ LE
Sbjct: 788 YREMCLQGVQPNGITLLSVLVACSHMGMLE 817
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 21/223 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +H+++++T D + + L + S F +++AR +FD IP +W ++ A +
Sbjct: 520 RALHSRVVATGHISDEFVGNALVS--MYSKFGRVDFARVVFDSIPVKRYPSWRVMLVALT 577
Query: 100 SSDEPIQSFMIFLQLVY-----NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-- 152
+ ++ ++ ++ SP F ++ +R +AIHG+ +
Sbjct: 578 QNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRA------RAIHGVIKSSD 631
Query: 153 ---DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
DLV+SN L++ YA CG+L A VF + +K+ VSW +MI G+ + G +A+ELY+
Sbjct: 632 FYPDLVLSNVLMNVYAKCGELEEARLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALELYK 691
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
M +V+P+ + V V+S+CA L G V + + G++
Sbjct: 692 AM---DVQPNFIAFVPVISSCADLGALVEGQRVHARLSDAGLQ 731
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 4/188 (2%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
SLE A ++F I + N ++W +I AY+ + ++ +F ++ P+ T V
Sbjct: 148 GSLEDAERVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGV 207
Query: 131 IKAAARPVQFRVGQAIHGMFE----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
+ A + G IH + + ++S LI Y G A VF + +DVV
Sbjct: 208 LTACSTLGDLETGMRIHALIRSKGVESAMVSTGLIDLYGKWGFFEDALQVFESVRDRDVV 267
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
W + I+ V G A+EL+R+ME E ++ + VT +L+AC+ D E G + I
Sbjct: 268 IWTAFIAACVYHGQSGFALELFRKMEAEGLQANNVTFSKILAACSNLEDFETGKTIEDRI 327
Query: 247 EKNGIKMD 254
G++ D
Sbjct: 328 YTLGLEYD 335
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T V+ A A G+ +H + D V+ N+L++ YA CGDL + +F +
Sbjct: 1 TFACVLSACAGLKDMERGKKVHRRIRESVARVDTVLQNALLNLYAKCGDLEESRRIFEAM 60
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
++ V +WN+MI+ +V+ FF++A+E +R M + P +T VL AC DLE G
Sbjct: 61 ERRTVATWNTMITAYVQHDFFQEALEAFRRM---DAPPSSITFTSVLGACCSPDDLETGK 117
Query: 241 WVSSHI 246
+ I
Sbjct: 118 AIHRQI 123
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 10/210 (4%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L N +Q + +H+++ S DF +P + L AR+ FD ++ +W
Sbjct: 412 LKNLEQGRAVHSRIASRDF--EPSLMVQTLLVDMYVKCGDLAEARRTFDGFKARDVISWT 469
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----- 147
+LI AYS + ++ +F + PN T VI A +R G+A+H
Sbjct: 470 SLITAYSHENFGREALEVFHSMELEGVE-PNSITFCTVIDACSRLSSLLPGRALHSRVVA 528
Query: 148 -GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
G D+ V N+L+ Y+ G + A VF I K SW M+ + G +A+E
Sbjct: 529 TGHISDEFV-GNALVSMYSKFGRVDFARVVFDSIPVKRYPSWRVMLVALTQNGHSHEALE 587
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDL 236
+Y + +E +P L +C D+
Sbjct: 588 MYSRIHLEGFRPGSPIFSAALVSCTALEDV 617
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 11/179 (6%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A ++F+ + ++ W I A + + +F ++ N T ++ A
Sbjct: 252 EDALQVFESVRDRDVVIWTAFIAACVYHGQSGFALELFRKMEAEGLQ-ANNVTFSKILAA 310
Query: 134 AARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ F G+ I G+ DD V+ + ++ +A CG L +F + + VV+
Sbjct: 311 CSNLEDFETGKTIEDRIYTLGLEYDD-VLQDGILSLHARCGSLVGTREMFDRMPHRTVVT 369
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
W +MI+ + + G+ +A+ELY M++E PD++ + VL AC++ ++LE G V S I
Sbjct: 370 WTTMIAAYNQRGYSMEALELYHCMDIE---PDDIALSNVLQACSRLKNLEQGRAVHSRI 425
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 109/202 (53%), Gaps = 11/202 (5%)
Query: 67 LSTFSSLEY---ARKMFDQIPQ--PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
++ +SS Y AR + D P+ + +WNT+I Y + P ++ F Q+
Sbjct: 135 INMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVML 194
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCV 176
++ TL + A AR +VG+ H + FE + + +SLI YA CG + A +
Sbjct: 195 -DDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRI 253
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F + ++ V W SMISG+ + G ++AI+L+R+M++ VK D+ T+ V+S+C + L
Sbjct: 254 FDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGAL 313
Query: 237 EFGIWVSSHIEKNGIKMDLTFE 258
+ G +V ++ + +G+ D++ +
Sbjct: 314 DLGRYVHAYCDIHGLGKDISVK 335
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 10/206 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K HA +++ F + Y S L + + +E AR++FD +P N W ++I Y+
Sbjct: 216 KLCHALLVTNGFEINCYMGSSLIS--MYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYT 273
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DDL 154
+ ++ +F + ++ T+ V+ + + +G+ +H + D+
Sbjct: 274 QLGQSKEAIKLFRDMQIAGVKV-DDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDI 332
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ NSLI Y+ CGD+ AY +F + K+D SW ++I GF G +A++L+ +ME E
Sbjct: 333 SVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSW-TVIMGFAANGLSGEALDLFAQMEEE 391
Query: 215 -NVKPDEVTMVVVLSACAKKRDLEFG 239
V P+E+T + VL++C+ +E G
Sbjct: 392 GGVMPNEITFLGVLTSCSHGGLVEQG 417
>gi|255568940|ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535253|gb|EEF36930.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 133/253 (52%), Gaps = 8/253 (3%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF 70
+ + NP +TV + + + +++IHA ++S + + L A + F
Sbjct: 180 VEENVNPNEVTVASVLRAYGSGNVAFYYVEQIHASIISRGLGTSSIACNPLIDLYAKNGF 239
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+ ARK+FD++ + +W +I +YS + ++ +F ++ + S P + V
Sbjct: 240 --IRSARKVFDELCMKDSVSWVAVISSYSQNGFGEEAIRLFCEM-HISGLSPTPYVFSSV 296
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A+ F +G+ +H + F + + N+L+ Y+ G+ A VF I KD
Sbjct: 297 LSACAKIELFDIGEQLHALVFKCGFFLETYVCNALVTLYSRLGNFISAQQVFSKIKCKDE 356
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
VS+NS+ISG + G ++A+EL+++M+++++KPD VT+ +LSACA + L G + S+
Sbjct: 357 VSYNSLISGLSQQGCSDRALELFKKMQLDHLKPDCVTVASLLSACASIKSLSKGEQLHSY 416
Query: 246 IEKNGIKMDLTFE 258
K G+ +D+ E
Sbjct: 417 AIKAGMCLDIIIE 429
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 8/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH+Q + T F F+ Y S L A L+ AR + ++ + ++ +W LI Y+
Sbjct: 512 EQIHSQAIKTGFEFNVYVCSVLIDMYA--KLGKLDIARGILRRLNEEDVVSWTALIAGYT 569
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
D ++ +F +++ N + I A A GQ IH + +DL
Sbjct: 570 QHDLFTEALNLFDEML-NRGIQSDNIGFSSAISACAGIQALSQGQQIHAQSYISGYSEDL 628
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I N+L+ YA CG + A F I KD +SWN+++SGF + G+ E+A++++ +M
Sbjct: 629 SIGNALVSLYARCGRIQEANLAFEKIDAKDSISWNALMSGFAQSGYCEEALKIFAQMTRA 688
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
N+K T +SA A +++ G + + I K G ++
Sbjct: 689 NIKASLFTFGSAVSAAANMANIKQGKQIHAMIMKTGFDSEI 729
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q ++IHAQ + + D + L + A ++ A F++I + +WN L+
Sbjct: 611 QGQQIHAQSYISGYSEDLSIGNALVSLYARC--GRIQEANLAFEKIDAKDSISWNALMSG 668
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
++ S ++ IF Q+ + + FT + AAA + G+ IH M F+
Sbjct: 669 FAQSGYCEEALKIFAQMT-RANIKASLFTFGSAVSAAANMANIKQGKQIHAMIMKTGFDS 727
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++ +SN+LI YA CG + A F I +K+ +SWN+MI+G+ + G +A+ L+++M+
Sbjct: 728 EIEVSNALITLYAKCGCIDGAKREFFEIPEKNEISWNAMITGYSQHGCGIEAVNLFQKMK 787
Query: 213 VENVKPDEVTMVVVLSACA 231
KP+ VT V V+SAC+
Sbjct: 788 QVGAKPNHVTFVGVISACS 806
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 11/201 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L+ C S + A K F N+ WN ++ AY D +SF IF Q+
Sbjct: 435 LYVKC-----SDITTAHKFFATTQTENVVLWNVMLVAYGQLDNLSKSFCIFRQMQIEG-L 488
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYC 175
PN+FT P +++ +G+ IH FE ++ + + LI YA G L +A
Sbjct: 489 IPNQFTYPSILRTCTSFGALDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDIARG 548
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+ + ++DVVSW ++I+G+ + F +A+ L+ EM ++ D + +SACA +
Sbjct: 549 ILRRLNEEDVVSWTALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISACAGIQA 608
Query: 236 LEFGIWVSSHIEKNGIKMDLT 256
L G + + +G DL+
Sbjct: 609 LSQGQQIHAQSYISGYSEDLS 629
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 9/217 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H+++L F + KL L K+FD +P +L TWN ++
Sbjct: 107 KKLHSKILKIGFDKESVLCDKLIE--FYFAVGDLNSVVKVFDDMPSRSLMTWNKVLSGLV 164
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA-AARPVQFRVGQAIHGM-----FEDD 153
++ + +F Q+V + PNE T+ V++A + V F + IH
Sbjct: 165 ANKTSNRVLGLFAQMVEENVN-PNEVTVASVLRAYGSGNVAFYYVEQIHASIISRGLGTS 223
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ N LI YA G + A VF + KD VSW ++IS + + GF E+AI L+ EM +
Sbjct: 224 SIACNPLIDLYAKNGFIRSARKVFDELCMKDSVSWVAVISSYSQNGFGEEAIRLFCEMHI 283
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ P VLSACAK + G + + + K G
Sbjct: 284 SGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKCG 320
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 103/222 (46%), Gaps = 10/222 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++HA + FF + Y + L T S + A+++F +I + ++N+LI S
Sbjct: 310 EQLHALVFKCGFFLETYVCNALVT--LYSRLGNFISAQQVFSKIKCKDEVSYNSLISGLS 367
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDD 153
++ +F ++ + P+ T+ ++ A A G+ +H GM D
Sbjct: 368 QQGCSDRALELFKKMQLDHLK-PDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLD- 425
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
++I SL+ Y C D+ A+ F ++VV WN M+ + + K+ ++R+M++
Sbjct: 426 IIIEGSLLDLYVKCSDITTAHKFFATTQTENVVLWNVMLVAYGQLDNLSKSFCIFRQMQI 485
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E + P++ T +L C L+ G + S K G + ++
Sbjct: 486 EGLIPNQFTYPSILRTCTSFGALDLGEQIHSQAIKTGFEFNV 527
>gi|255540005|ref|XP_002511067.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550182|gb|EEF51669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 318
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 15/201 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K+IHA ++ F D S L + CA ++ AR++FD+IP NL W +LI
Sbjct: 65 KKIHALIVVNGFVLDVILGSCLIDMYAKCA-----QMDNAREVFDKIPVRNLVCWTSLIV 119
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD--- 153
Y+ + + +F +L + + + V+ A G+ +H E +
Sbjct: 120 GYARLNMYKEGLELFRELQI-AGVIADAALVACVVSACGHMGALAQGRWVHTYCERNGID 178
Query: 154 --LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
L + N+LI Y+ CGD+ A+ +F + KKD+ SW +MISGF G+ ++A+EL+ ++
Sbjct: 179 MNLSVRNALIDMYSKCGDIEKAHQIFNGMVKKDLFSWTAMISGFAMNGYSDEALELFAQV 238
Query: 212 EVEN-VKPDEVTMVVVLSACA 231
E N VKP+EVT + VLSAC+
Sbjct: 239 ETCNDVKPNEVTFLGVLSACS 259
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 5/175 (2%)
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
++ +WN++I Y + + +F +L+ ++ +E TL + A R +G+ I
Sbjct: 8 DVVSWNSMISGYLQCERNGDALKVFGELLNDNFVRFDEVTLVNALTACGRTGFVNLGKKI 67
Query: 147 HGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
H + F D+++ + LI YA C + A VF I +++V W S+I G+ +
Sbjct: 68 HALIVVNGFVLDVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVGYARLNMY 127
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
++ +EL+RE+++ V D + V+SAC L G WV ++ E+NGI M+L+
Sbjct: 128 KEGLELFRELQIAGVIADAALVACVVSACGHMGALAQGRWVHTYCERNGIDMNLS 182
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIW 241
+DVVSWNSMISG+++ A++++ E+ +N V+ DEVT+V L+AC + + G
Sbjct: 7 RDVVSWNSMISGYLQCERNGDALKVFGELLNDNFVRFDEVTLVNALTACGRTGFVNLGKK 66
Query: 242 VSSHIEKNGIKMDLTF 257
+ + I NG +D+
Sbjct: 67 IHALIVVNGFVLDVIL 82
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 12/192 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+S++ AR MF ++ Q N+ +WN LI Y+ + E ++ +F +L+ +P +T +
Sbjct: 329 ASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLF-RLLKRESIWPTHYTFGNL 387
Query: 131 IKAAARPVQFRVGQAIH-----------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
+ A A +G+ H E D+ + NSLI Y CG + VF
Sbjct: 388 LSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEK 447
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++D VSWN++I G+ + G+ +A++++R+M V KPD VTM+ VL AC+ +E G
Sbjct: 448 MKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEG 507
Query: 240 IWVSSHIEKNGI 251
+E++G+
Sbjct: 508 RHYFFSMEEHGL 519
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 40/247 (16%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
++HA + + + D Y S L S S+ A ++F + + NL TWN+LI Y
Sbjct: 168 QVHALVSKSRYSTDVYMGSALID--MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQ 225
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FEDDL 154
+ ++ +F++++ +S P+E TL V+ A A + G IH F DDL
Sbjct: 226 NGPASEALEVFVRMM-DSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDL 284
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIG-------------------------------KK 183
V+ N+L+ YA C + A VF + ++
Sbjct: 285 VLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQR 344
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+VVSWN++I+G+ + G E+A+ L+R ++ E++ P T +LSACA DL G
Sbjct: 345 NVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAH 404
Query: 244 SHIEKNG 250
+H+ K G
Sbjct: 405 THVLKQG 411
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 125/253 (49%), Gaps = 40/253 (15%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI------ 95
+HA++L T F + + ++L L+ ARK+FD++PQ N +TWN+LI
Sbjct: 37 VHARILMTQFSMEIFIQNRLID--VYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKS 94
Query: 96 -------RAYSSSDEPIQ------------------SFMIFLQLVYNSPYFPNEFTLPFV 130
R + S EP Q S F+++ + + NE++
Sbjct: 95 GFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKM-HREDFLLNEYSFGSA 153
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A + +G +H + + D+ + ++LI Y+ CG +A A VF + ++++
Sbjct: 154 LSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNL 213
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V+WNS+I+ + + G +A+E++ M ++PDEVT+ V+SACA L+ G+ + +
Sbjct: 214 VTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHAR 273
Query: 246 IEK-NGIKMDLTF 257
+ K N + DL
Sbjct: 274 VVKTNKFRDDLVL 286
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 36/172 (20%)
Query: 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAY 174
Y PN ++ + R R + +H F ++ I N LI Y C L A
Sbjct: 11 YLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDAR 70
Query: 175 CVFVMIGKKDVVSW-------------------------------NSMISGFVEGGFFEK 203
+F + +++ +W NSM+SGF + FE+
Sbjct: 71 KLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEE 130
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++E + +M E+ +E + LSACA DL G V + + K+ D+
Sbjct: 131 SLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDV 182
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 129/288 (44%), Gaps = 68/288 (23%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T+ LK++HA L T F D Y + L A FS+L +A K+F+ +P PN++ +N
Sbjct: 41 TSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNI 100
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG----- 148
+I+ ++EP ++ + +++ PN+FT P + KA G +H
Sbjct: 101 IIKGCLQNNEPCKAICCYYKMMIAHAR-PNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQ 159
Query: 149 ----------------------------MFED---DLVISNSLIHFYAVCGDL------- 170
+ ED D++ N++I Y CG++
Sbjct: 160 GLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELF 219
Query: 171 ----------------AMAYC--------VFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
MA C +F + +K+ +SW++MI G+++GG++++A+E
Sbjct: 220 WSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALE 279
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++ M+ E ++P + + VL+ACA L+ G W+ +++ N D
Sbjct: 280 VFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFD 327
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 100/188 (53%), Gaps = 6/188 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
++ +E AR++F+++ + N +W+ +I Y ++ +F ++ P +F
Sbjct: 236 GMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVF-NVMQREEIRPRKF 294
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMI 180
L V+ A A G+ IH + D V+ +L+ YA CG L MA+ VF +
Sbjct: 295 VLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKM 354
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
KK+V +WN+MI G G E AIEL+ +M+ + +P+ +T++ VLSACA ++ G+
Sbjct: 355 EKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGL 414
Query: 241 WVSSHIEK 248
+ + +E+
Sbjct: 415 RIFNSMEE 422
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 37/205 (18%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
Q + IHA + + FD + L + C L+ A +F+++ + ++TWN +
Sbjct: 311 QGRWIHAYVNNNSNSFDAVLGTALVDMYAKCG-----RLDMAWDVFEKMEKKEVFTWNAM 365
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL 154
I + +F ++ + PN TL V+ A A GM ++ L
Sbjct: 366 ICGLGMHGRAEDAIELFFKM-QKQKFRPNGITLLGVLSACAHS----------GMVDEGL 414
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I NS+ Y + + CV ++G+ G +A E+ M +E
Sbjct: 415 RIFNSMEEVYGIEPGMEHYGCVVDLLGR---------------AGLLGEAEEVMYSMPME 459
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
P +L AC K D+E G
Sbjct: 460 ---PSAAVWGALLGACRKHGDVELG 481
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 148 GMFEDDLVISNSLIHFYAV--CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
G F+D V S +L+ YA +L A VF + +V +N +I G ++ KAI
Sbjct: 57 GHFQDHYV-SGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAI 115
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
Y +M + + +P++ T + AC E G+ V +H+ K G+ D+
Sbjct: 116 CCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDV 165
>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 111/233 (47%), Gaps = 9/233 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQPNLYTWN 92
T + L++IHA +L T + + ALS + Y+ ++F Q P L N
Sbjct: 22 TGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRLNPTLSHCN 81
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFE 151
T+IRA+S S P + F +F L NS N + F +K + G IHG +F
Sbjct: 82 TMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFS 141
Query: 152 D----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
D D ++ +L+ Y+ C + A VF I K+D VSWN + S ++ + L
Sbjct: 142 DGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVL 201
Query: 208 YREMEVE---NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+ +M+ + VKPD VT ++ L ACA L+FG V I++NG+ L
Sbjct: 202 FDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNL 254
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 102/201 (50%), Gaps = 15/201 (7%)
Query: 41 RIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+IH ++ S F D + L++ C ST A K+FD+IP+ + +WN L
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENST-----DACKVFDEIPKRDTVSWNVLFSC 188
Query: 98 YSSSDEPIQSFMIFLQLV--YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-- 153
Y + ++F ++ + P+ T ++A A G+ +H +++
Sbjct: 189 YLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGL 248
Query: 154 ---LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
L +SN+L+ Y+ CG + AY VF + +++VVSW ++ISG GF ++AIE + E
Sbjct: 249 SGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNE 308
Query: 211 MEVENVKPDEVTMVVVLSACA 231
M + P+E T+ +LSAC+
Sbjct: 309 MLKFGISPEEQTLTGLLSACS 329
>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14050, mitochondrial; Flags: Precursor
gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 20/231 (8%)
Query: 21 TVNNGHQRHPHFLTNQ--------KQLKRIHAQ---MLSTDFFFDPYSASKLFTPCAL-- 67
++++G Q H HF+ ++ L ++A+ + S FD + A+
Sbjct: 120 SIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVS 179
Query: 68 --STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+ E A ++F +P NLY+W LI + S + +++F +F ++ +
Sbjct: 180 GYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPL 239
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
L ++ A A G+ +HG+ F+ + ISN+LI YA C D+ A +F +
Sbjct: 240 VLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRM 299
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+DVVSW S+I G + G EKA+ LY +M VKP+EVT V ++ AC+
Sbjct: 300 RHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACS 350
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI-ELYREMEVE 214
++N+L++ Y CG + A VF + +D ++W S+++ + K +
Sbjct: 40 LANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSS 99
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
++PD+ ++ ACA ++ G V H
Sbjct: 100 GLRPDDFVFSALVKACANLGSIDHGRQVHCH 130
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 23/235 (9%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCA-----LSTFSSLEYARKMFDQIPQPNLYTWN 92
QL ++H+ +++ ++KL A S+FS A P N+Y WN
Sbjct: 31 QLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS------PSNNVYLWN 84
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
++IRA + + ++ ++ + P+ +T P VI A A + F + ++IH
Sbjct: 85 SIIRALTHNGLFSEALSLYSE-TQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLD 143
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
F DL I N+LI Y DL A VF + +DVVSWNS+ISG+ G++ +A+E+
Sbjct: 144 MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEI 203
Query: 208 YRE-----MEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
Y + ME+ N KPD +T+ +L AC DLEFG +V ++ +G + D T
Sbjct: 204 YYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 258
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 119/229 (51%), Gaps = 20/229 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH ++L F D Y + L F+ L+ ARK+F+++P ++ +WN+LI Y+
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALID--MYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192
Query: 100 SS---DEPI----QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----- 147
++ +E + QS +F+++V + + P+ T+ +++A G+ +H
Sbjct: 193 ANGYWNEALEIYYQSIKLFMEMV--NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMIT 250
Query: 148 GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
+E D SN LI+ YA CG+L + VF + KD VSWNSMI+ +++ G ++++
Sbjct: 251 SGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKV 310
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
+ M+ ++ +T ++++C D G+ + S + G+ D+
Sbjct: 311 FENMKARDI----ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMA 355
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
K+F+ + ++ TWNT+I + S E + + + P+ T+ ++ +
Sbjct: 309 KVFENMKARDIITWNTIIASCVHS-EDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLL 367
Query: 138 VQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
R G+ IHG E D+ + N LI Y+ CG L ++ VF ++ KDVV+W ++I
Sbjct: 368 AAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALI 427
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
S G +KA+ + EME + PD V V ++ AC+ +E G+
Sbjct: 428 SACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGL 475
>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
Length = 1347
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 105/197 (53%), Gaps = 8/197 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+++H +++ + D + L C +L A K+FD +P +L W+TL+ +
Sbjct: 679 RKVHGRIIKSGVDDDAVIETSLL--CMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCL 736
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDDL 154
+ E +++ +F +V + P+ T+ V++ A R+ +++HG MF+ D
Sbjct: 737 ENCEVLKALRMFKCMV-DDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDE 795
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ NSL+ Y+ CGDL + +F I KK+ VSW +MIS + G F EKA+ + EM
Sbjct: 796 TLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMLKS 855
Query: 215 NVKPDEVTMVVVLSACA 231
++P+ VT+ +LS+C
Sbjct: 856 GIEPNLVTLYSILSSCG 872
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 8/204 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH ++ TD D + + + + S F +L A +FDQI ++ TWN+++ +S
Sbjct: 983 KQIHGHVIRTDVS-DEFVQNSVIDMYSKSGFVNL--ACTVFDQIKHRSIVTWNSMLCGFS 1039
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE----DDLV 155
+ +++ +F +Y+S N+ T VI+A + G+ +H DL
Sbjct: 1040 QNGNSLEAINLF-DYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGIKDLF 1098
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+LI YA CGDL A VF + + +VSW+SMI+ + G AI + +M
Sbjct: 1099 TDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINAYGMHGRIGSAISTFNQMVESG 1158
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG 239
KP+EV + VLSAC +E G
Sbjct: 1159 TKPNEVVFMNVLSACGHSGSVEEG 1182
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 19/228 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +H Q+ F FD + L T S L + K+F++I + N +W +I +Y+
Sbjct: 780 RSVHGQITRKMFDFDETLCNSLLT--MYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYN 837
Query: 100 S---SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDL- 154
S++ ++SF L+ S PN TL ++ + R G+++HG +L
Sbjct: 838 RGEFSEKALRSFSEMLK----SGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELD 893
Query: 155 ----VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+S +L+ YA CG L + ++G +++V WNS IS + G +A+ L+R+
Sbjct: 894 PNYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQ 953
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
M +KPD T+ ++SAC + G + H+ I+ D++ E
Sbjct: 954 MVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHV----IRTDVSDE 997
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 5/174 (2%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+ N+ WN+ I Y+ I++ +F Q+V P+ FTL +I A R+
Sbjct: 923 VGDRNIVLWNSHISLYAHRGMVIEALCLFRQMV-TWRIKPDSFTLASIISACENTGLVRL 981
Query: 143 GQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
G+ IHG D + NS+I Y+ G + +A VF I + +V+WNSM+ GF +
Sbjct: 982 GKQIHGHVIRTDVSDEFVQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQN 1041
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
G +AI L+ M ++ ++VT + V+ AC+ LE G WV + GIK
Sbjct: 1042 GNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGIK 1095
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 10/228 (4%)
Query: 37 KQLKRIHAQMLSTDFFF-DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+ + ++HA +L T DP +KL A S + +R +F+ P P+ + + LI
Sbjct: 573 RLVSQLHAHLLVTGRLRRDPLPVTKLIESYAF--MGSPDSSRLVFEAFPYPDSFMYGVLI 630
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ-FRVGQAIHGMF---- 150
+ + ++ +LV ++F P V++A A + VG+ +HG
Sbjct: 631 KCNVWCHLLDAAIDLYHRLVSEKTQI-SKFVFPSVLRACAGSREHLSVGRKVHGRIIKSG 689
Query: 151 -EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+DD VI SL+ Y G+L+ A VF + +D+V+W++++S +E KA+ +++
Sbjct: 690 VDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENCEVLKALRMFK 749
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
M + V+PD VTM+ V+ CA+ L V I + D T
Sbjct: 750 CMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETL 797
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 113/219 (51%), Gaps = 9/219 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH ++ F+ + ++ L + F SL +A+K+F + + ++ +WNTLI Y+
Sbjct: 115 KLIHLYVIKHGLEFELFVSNALIN--MYAKFGSLGHAQKVFGLLIK-DVVSWNTLITGYA 171
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ ++ ++L + + PN+ T ++ A + + G IHG D+
Sbjct: 172 QNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDV 231
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ LI Y CG L A +F + +K+ V WN+MIS + G EKA+EL+REM+ E
Sbjct: 232 FVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAE 291
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN-GIK 252
VKPD +T V +LSAC+ + W + +E+ GIK
Sbjct: 292 RVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIK 330
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 10/222 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH +L F +D + A+ L S F + ARK+FD +P + +WN +I Y
Sbjct: 14 KKIHCLVLKLGFEWDVFVAASLVH--MYSRFGLVGDARKLFDDMPARDRGSWNAMISGYC 71
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDL 154
+ ++ I ++ + T+ V+ A+ G+ IH E +L
Sbjct: 72 QNGNAAEALDIADEMRLEGVKM-DAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFEL 130
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV- 213
+SN+LI+ YA G L A VF ++ KDVVSWN++I+G+ + G +AIE+Y ME
Sbjct: 131 FVSNALINMYAKFGSLGHAQKVFGLL-IKDVVSWNTLITGYAQNGLASEAIEVYLLMEEH 189
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
E + P++ T V +L A + L+ G+ + + KN + D+
Sbjct: 190 EEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDV 231
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 8/133 (6%)
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
P V+KA + G+ IH + FE D+ ++ SL+H Y+ G + A +F +
Sbjct: 1 PPVVKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+D SWN+MISG+ + G +A+++ EM +E VK D +T+ VL CA+ D+ G +
Sbjct: 58 RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117
Query: 243 SSHIEKNGIKMDL 255
++ K+G++ +L
Sbjct: 118 HLYVIKHGLEFEL 130
>gi|125525852|gb|EAY73966.1| hypothetical protein OsI_01850 [Oryza sativa Indica Group]
Length = 641
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 9/205 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI-PQPNLYTWNTLIRAYS 99
++HA ++T F D + A+ L F ++ AR++FD+ + N +WN L+ AY
Sbjct: 121 QVHAMAMATGFGSDVFVANALVA--MYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYV 178
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+D+ + +F ++V+ S P EF V+ A G+ +HGM ++ D+
Sbjct: 179 KNDQCGDAIQVFGEMVW-SGIQPTEFGFSCVVNACTGSRNIEAGRQVHGMVVRMGYDKDV 237
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+N+L+ Y G + +A +F + DVVSWN++ISG V G +AIEL +M+
Sbjct: 238 FTANALVDMYVKMGRVDIASLIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSS 297
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFG 239
+ P+ T+ +L ACA + G
Sbjct: 298 GLVPNVFTLSSILKACAGTGAFDLG 322
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 19/203 (9%)
Query: 59 SKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS 118
SK PC AR++FD+IP P +W++L+ AYS++ P + F +
Sbjct: 48 SKCRRPCC---------ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGM-RAE 97
Query: 119 PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMA 173
NEF+LP V+K R+G +H M F D+ ++N+L+ Y G + A
Sbjct: 98 GVCCNEFSLPVVLKCVPDA---RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDA 154
Query: 174 YCVFVMIG-KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
VF G +++ VSWN ++S +V+ AI+++ EM ++P E V++AC
Sbjct: 155 RRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTG 214
Query: 233 KRDLEFGIWVSSHIEKNGIKMDL 255
R++E G V + + G D+
Sbjct: 215 SRNIEAGRQVHGMVVRMGYDKDV 237
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 98/202 (48%), Gaps = 8/202 (3%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N + +++H ++ + D ++A+ L ++ A +F+++P ++ +WN L
Sbjct: 217 NIEAGRQVHGMVVRMGYDKDVFTANALVD--MYVKMGRVDIASLIFEKMPDSDVVSWNAL 274
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---- 150
I + ++ + LQ+ +S PN FTL ++KA A F +G+ IHG
Sbjct: 275 ISGCVLNGHDHRAIELLLQM-KSSGLVPNVFTLSSILKACAGTGAFDLGRQIHGFMIKVN 333
Query: 151 -EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ D I L+ YA L A VF + +D++ N++ISG GG ++A+ L+
Sbjct: 334 ADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFY 393
Query: 210 EMEVENVKPDEVTMVVVLSACA 231
E+ E + + T+ VL + A
Sbjct: 394 ELRKEGLGVNRTTLTAVLKSTA 415
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 10/187 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH M+ + D Y L A + F L+ ARK+FD + +L N LI S
Sbjct: 323 RQIHGFMIKVNADSDDYIGVGLVDMYAKNHF--LDDARKVFDWMFHRDLILCNALISGCS 380
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DL 154
++ +F +L N TL V+K+ A + +H + E D
Sbjct: 381 HGGRHDEALSLFYEL-RKEGLGVNRTTLTAVLKSTASLEAASTTRQVHALAEKIGFIFDA 439
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF--VEGGFFEKAIELYREME 212
+ N LI Y C L+ A VF D++++ SMI+ + G + + ++ + M+
Sbjct: 440 HVVNGLIDSYWKCSCLSDANRVFEECSSGDIIAFTSMITALSQCDHGMWNEVAKVRKLMK 499
Query: 213 VENVKPD 219
N+K +
Sbjct: 500 DSNIKKE 506
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%)
Query: 158 NSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217
N LI FY+ C A VF I VSW+S+++ + G AI+ + M E V
Sbjct: 41 NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100
Query: 218 PDEVTMVVVLSACAKKR 234
+E ++ VVL R
Sbjct: 101 CNEFSLPVVLKCVPDAR 117
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 104/200 (52%), Gaps = 14/200 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KR+HA +L F A+ L + C + AR +FD + ++ TW +I
Sbjct: 252 KRLHAYILRNGFGMSLALATALVDMYGKCG-----EIRSARAIFDSMKNKDVMTWTAMIS 306
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----E 151
AY+ ++ +F +F+Q+ N PNE T+ ++ A +G+ H E
Sbjct: 307 AYAQANCIDYAFQLFVQMRDNG-VRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVE 365
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+++ +LI YA CGD++ A +F +D+ +WN M++G+ G+ EKA++L+ EM
Sbjct: 366 VDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEM 425
Query: 212 EVENVKPDEVTMVVVLSACA 231
E VKP+++T + L AC+
Sbjct: 426 ETLGVKPNDITFIGALHACS 445
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 122/246 (49%), Gaps = 30/246 (12%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K IH + D + + L S SL AR +FD++ + ++ +W+T+IRAY
Sbjct: 129 KEIHGFSVKNGLVSDVFVVNALMQ--MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI 186
Query: 100 S-----SDEPIQSFM-----------------IFLQLVYNSPYFPNEFTLPFVIKAAARP 137
+ S I S+ +F++++ + FPN+ T+ +I +
Sbjct: 187 TLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEEN-VFPNDITMLSLIISCGFV 245
Query: 138 VQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
++G+ +H F L ++ +L+ Y CG++ A +F + KDV++W +MI
Sbjct: 246 GAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMI 305
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
S + + + A +L+ +M V+P+E+TMV +LS CA L+ G W ++I+K G++
Sbjct: 306 SAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVE 365
Query: 253 MDLTFE 258
+D+ +
Sbjct: 366 VDVILK 371
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 120/283 (42%), Gaps = 85/283 (30%)
Query: 12 PRHPNPTTLTVNNGHQRHPHFLTNQ----KQLKRIHAQMLSTDF------FFDPYSASKL 61
P++P+P N HQ+HP F N Q +++HA + T F F P+ +
Sbjct: 35 PQNPSPQH---QNKHQKHPSFTPNNHLCLDQTQQLHAHITRTHFNHAQQVSFSPFESHPR 91
Query: 62 FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
+ AL+T++ Y RK+ D + SF+I
Sbjct: 92 Y---ALNTYT---YMRKL----------------------DIEVDSFII----------- 112
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCV 176
P V+KA ++ R+G+ IHG D+ + N+L+ Y+ CG L A +
Sbjct: 113 ------PSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLL 166
Query: 177 FVMIGKKDVVSWNS----------------------MISGFVEGGFFEKAIELYREMEVE 214
F + ++DVVSW++ MI+G++ E+ L+ M E
Sbjct: 167 FDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEE 226
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
NV P+++TM+ ++ +C ++ G + ++I +NG M L
Sbjct: 227 NVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLAL 269
>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
gi|194688792|gb|ACF78480.1| unknown [Zea mays]
Length = 706
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR MFD+IP+P++ TWNTL+ Y + ++ +F ++ + + P+ TL ++ + +
Sbjct: 270 ARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQ-PDRTTLAVILSSCS 328
Query: 136 RPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
R F +G+ +H + +D+ +++ LI Y+ CG + +A +F M+ ++DVV WNS
Sbjct: 329 RLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNS 388
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
MISG E+A + ++M + P E + +++ CA+ + G + + + K+G
Sbjct: 389 MISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDG 448
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 14/207 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L N + K++H+ + D + AS L S + A +F+ + + ++ WN
Sbjct: 330 LGNFELGKQVHSASVRLLLHNDMFVASGLID--IYSKCGQVGIALIIFNMMTERDVVCWN 387
Query: 93 TLIRA---YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
++I +S S+E FL+ + + FP E + +I AR G+ +H
Sbjct: 388 SMISGLAIHSLSEEAFD----FLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQ 443
Query: 150 -----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
++ ++ + SLI YA G++ A F + K++V+WN MI G+ + GF EKA
Sbjct: 444 VLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKA 503
Query: 205 IELYREMEVENVKPDEVTMVVVLSACA 231
+EL+ M KPD VT + VL+ C+
Sbjct: 504 VELFEYMLTTKQKPDSVTFIAVLTGCS 530
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 6/155 (3%)
Query: 83 IPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV 142
+P N +WNT+I A + S P ++ ++ Q + P FTL V+ A
Sbjct: 1 MPDRNAVSWNTVIAAVARSGSPGEALEMY-QGMLQEGLAPTNFTLASVLSACGAVAALDD 59
Query: 143 GQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197
G+ HG+ + + N L+ Y CG +A A +F + + VS+ +M+ G +
Sbjct: 60 GRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQ 119
Query: 198 GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
GG + A+ L+ M ++ D V + VL ACA+
Sbjct: 120 GGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQ 154
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 33/205 (16%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ IHA ++ F D + + L A ++ A K+F+ + ++ +WN LI Y
Sbjct: 170 QSIHALVVRKGFGSDQHVGNSLVDLYAKGM--KMDEAIKVFESLSSVSIVSWNILITGYG 227
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS 159
+ M L+ + S + PNE T ++ A ++ R
Sbjct: 228 QLG-CYERAMEVLEFMQESGFEPNEVTYSNML---ASCIKAR------------------ 265
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
D+ A +F I K V +WN+++SG+ + ++ I+L+R M+ +NV+PD
Sbjct: 266 ---------DVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPD 316
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSS 244
T+ V+LS+C++ + E G V S
Sbjct: 317 RTTLAVILSSCSRLGNFELGKQVHS 341
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 19/189 (10%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++T C S+ A ++FD +P PN ++ ++ + + +F ++ +
Sbjct: 85 MYTKCG-----SVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARM-SRTGI 138
Query: 121 FPNEFTLPFVIKAAARPVQ--------FRVGQAIHGM-----FEDDLVISNSLIHFYAVC 167
+ + V+ A A+ ++ Q+IH + F D + NSL+ YA
Sbjct: 139 RVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKG 198
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
+ A VF + +VSWN +I+G+ + G +E+A+E+ M+ +P+EVT +L
Sbjct: 199 MKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNML 258
Query: 228 SACAKKRDL 236
++C K RD+
Sbjct: 259 ASCIKARDV 267
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
++ VSWN++I+ G +A+E+Y+ M E + P T+ VLSAC L+ G
Sbjct: 4 RNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
L AR +FD +PQ + +W +I Y+ + ++ + +++ + N T
Sbjct: 326 GDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESL-NRSTFCCA 384
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A +G+ +HG +E ++ N+L+ Y CG + AY VF + KD+
Sbjct: 385 LSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDI 444
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
VSWN+M++G+ GF +A+ ++ M VKPDE+TMV VLSAC+
Sbjct: 445 VSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACS 490
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 33/205 (16%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF------------------------ 111
AR++FDQIP +L +WNT+I Y+ + Q+ +F
Sbjct: 207 ARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGML 266
Query: 112 --LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED----DLVISNSLIHFYA 165
+ V++ E + +I A+ + +G+ + FE+ ++ N +I Y
Sbjct: 267 DEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGREL---FEEMPFPNIGSWNIMISGYC 323
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
GDLA A +F M+ ++D VSW ++I+G+ + G +E+A+ + EM+ + + T
Sbjct: 324 QNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCC 383
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNG 250
LSACA LE G V + + G
Sbjct: 384 ALSACADIAALELGKQVHGQVVRTG 408
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L AR +FD +P+ ++ +WN ++ Y S ++ +F ++ + N + ++
Sbjct: 111 LRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK-----NSISWNGLLA 165
Query: 133 AAARPVQFRVGQAIHGMFED-DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
A R + + + D +L+ N L+ Y L A +F I +D++SWN+M
Sbjct: 166 AYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTM 225
Query: 192 ISGFVEGGFFEKAIELYREMEVENV 216
ISG+ + G +A L+ E V +V
Sbjct: 226 ISGYAQDGDLSQARRLFEESPVRDV 250
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 115 VYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMA 173
V+++ N + +I R +F + + + M DL N ++ YA L A
Sbjct: 55 VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDA 114
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+F + +KDVVSWN+M+SG+V G ++A +++ M +N
Sbjct: 115 RMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKN 156
>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
Length = 645
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 14/233 (6%)
Query: 15 PNPTTLT---VNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS 71
PNP+ LT R PH L +QL HA+ L +P+ + L T A
Sbjct: 66 PNPSHLTFPIALKSASRLPHPLRAGEQL---HARSLKLPSHTNPHVLTSLLTLYARCGL- 121
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
L A+++FD++P P+ +W LI AY + + ++ + N P+ FT V+
Sbjct: 122 -LHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANG-MRPDSFTAVRVL 179
Query: 132 KAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A AR G+ + E + + ++ + + Y CG++A A VF + KD V
Sbjct: 180 TACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAV 239
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+W +M+ G+ G +A++L+ M+ E V+PD + LSAC + L+ G
Sbjct: 240 AWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 292
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 11/183 (6%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F +A L+ C + AR++FD++ + W ++ Y+S+ P ++ +FL
Sbjct: 208 FVATAAVDLYVKCG-----EMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFL 262
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-QAIHGM----FEDDLVISNSLIHFYAVC 167
+ P+ + + + A R +G QAI + F D+ V+ +LI YA C
Sbjct: 263 AMQAEG-VRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKC 321
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G A A+ VF + KKD++ WN+MI G G + A L +ME VK ++ T + +L
Sbjct: 322 GSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLL 381
Query: 228 SAC 230
+C
Sbjct: 382 CSC 384
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 122 PNEFTLPFVIKAAAR-PVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYC 175
P+ T P +K+A+R P R G+ +H + + SL+ YA CG L A
Sbjct: 68 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + VSW ++I+ +++ G +A+ + R ++PD T V VL+ACA+ D
Sbjct: 128 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 187
Query: 236 LEFGIWVSSHIEKNGI 251
L G V E+ GI
Sbjct: 188 LATGETVWRAAEQEGI 203
>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14050, mitochondrial-like [Cucumis sativus]
Length = 611
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 107/226 (47%), Gaps = 34/226 (15%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPC-----ALSTFSSL-------------EYARK 78
K++HA+ + + F D S L +T C A + F S+ YAR
Sbjct: 125 KQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARS 184
Query: 79 --------MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+F Q P NL++W LI S I SF +F ++ + L V
Sbjct: 185 GRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSV 244
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A +G+ IHG+ FE L ISN+L+ YA C D+ A +F + +KDV
Sbjct: 245 VGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDV 304
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+SW S+I G + G E+A+ LY EM + +KP+EVT V +L AC+
Sbjct: 305 ISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACS 350
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 13/183 (7%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSS---LEYARKMFDQIPQPNLYTWNTLIRAY 98
+H+Q++ F S L + L + + A ++FD++P + +W +++ A+
Sbjct: 25 LHSQIIKAGF-----DKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAH 79
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DD 153
+ + P ++ + + + P+ F +++A + R+G+ +H F DD
Sbjct: 80 NKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDD 139
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
V+ +SLI Y CG A VF I K+ VSW SMISG+ G +A++L+ + V
Sbjct: 140 EVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPV 199
Query: 214 ENV 216
N+
Sbjct: 200 RNL 202
>gi|255571614|ref|XP_002526753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533942|gb|EEF35667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 818
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 117/218 (53%), Gaps = 14/218 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
++ +R+HA ++ T + Y ++L +T C L L AR +FD++ + N+ +W
Sbjct: 492 REGQRVHAHIIKTYYLPSVYLRTRLIVFYTKCDL-----LMDARHVFDEMSERNVVSWTA 546
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+I YS ++ +F++++ S PNEFTL V+ + +G+ IH +
Sbjct: 547 MISGYSRRGFAFETLHLFVRML-RSDIEPNEFTLATVLTSCTDASGSELGRQIHSLIIKC 605
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
++ + + +SL+ YA G + A VF + ++DVVS ++ISG+ + G E+A+EL+
Sbjct: 606 NYDSHIFVGSSLLDMYAKAGRILEARMVFESLPERDVVSCTAIISGYAQLGLDEEALELF 665
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
R +E E + + VT VL++ + L+ G V SH+
Sbjct: 666 RRLEREGLSSNCVTYASVLTSLSGLAALDHGKQVHSHV 703
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 100/198 (50%), Gaps = 9/198 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++IH+ ++ ++ + S L A + + AR +F+ +P+ ++ + +I Y+
Sbjct: 596 RQIHSLIIKCNYDSHIFVGSSLLDMYAKA--GRILEARMVFESLPERDVVSCTAIISGYA 653
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDL---- 154
++ +F +L N T V+ + + G+ +H + +L
Sbjct: 654 QLGLDEEALELFRRL-EREGLSSNCVTYASVLTSLSGLAALDHGKQVHSHVLRRELPFYV 712
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ NS+I Y+ CG L A +F + ++ V+SWN+M+ G+ + G + +EL++ M E
Sbjct: 713 VLQNSMIDMYSKCGSLNYARRIFDSMPERTVISWNAMLVGYGKHGMGREVVELFKLMRTE 772
Query: 215 N-VKPDEVTMVVVLSACA 231
N VKPD VT++ VLS C+
Sbjct: 773 NKVKPDSVTILAVLSGCS 790
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 140 FRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
R GQ +H + + + LI FY C L A VF + +++VVSW +MISG
Sbjct: 491 IREGQRVHAHIIKTYYLPSVYLRTRLIVFYTKCDLLMDARHVFDEMSERNVVSWTAMISG 550
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248
+ GF + + L+ M +++P+E T+ VL++C E G + S I K
Sbjct: 551 YSRRGFAFETLHLFVRMLRSDIEPNEFTLATVLTSCTDASGSELGRQIHSLIIK 604
>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 641
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 5/175 (2%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ AR++FD++P + +W ++ Y + F +FL ++ PNEFT V++
Sbjct: 218 VDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLR 277
Query: 133 AAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A+ G+ +HG D ++L+ Y+ CGD+ A VF + K D+VS
Sbjct: 278 ACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVS 337
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
W ++ISG+ + G E+A+ + +KPD VT V VLSACA ++ G+ +
Sbjct: 338 WTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEI 392
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 11/189 (5%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFV 130
L AR++FD++PQ + + W+ L+ Y+ +P + ++ +Q + NEFT
Sbjct: 111 LPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSA 170
Query: 131 IKAAARPVQFRVGQAIH--------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ AAA R G+ +H D V+ ++L YA CG + A VF +
Sbjct: 171 LAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPV 230
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
+D VSW +M+ + +GG + L+ M V+P+E T VL ACA+ FG
Sbjct: 231 RDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQ 290
Query: 242 VSSHIEKNG 250
V + K+G
Sbjct: 291 VHGRMAKSG 299
>gi|356540373|ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 881
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 89/152 (58%), Gaps = 10/152 (6%)
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
QP++ +W LI A++ D P Q+F++F QL + Y P+ +T +KA+ +
Sbjct: 624 QPDIVSWTALISAFAEQD-PEQAFLLFCQL-HRQSYLPDWYTFSIALKASTYFATEQRAM 681
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
IH F++D V+ N+LIH YA CG LA++ VF +G +D+VSWNSM+ + G
Sbjct: 682 DIHSQVIKEGFQEDTVLCNALIHAYAWCGSLALSKQVFNEMGCRDLVSWNSMLKSYAIHG 741
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+ A+EL++ M NV D T VV+LSAC+
Sbjct: 742 QTKDAVELFQRM---NVCTDSATFVVLLSACS 770
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 90/202 (44%), Gaps = 20/202 (9%)
Query: 70 FSSLEYARKMFDQIPQ----PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
+ L+ A K+F ++ + PN+ TWN+LI+ + + +++F +F + Y P+
Sbjct: 272 YGELDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKAFHLFTDMQEQGLY-PDPK 330
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNS--------LIHFYAVCGDLAMA-YCV 176
+I ++ + I FE + N L+ Y G A CV
Sbjct: 331 IFVTIISCLGEQGKWDI---IKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNAGECV 387
Query: 177 FVMIGKKDVVS---WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+ + +VS + + + + + G E+ I + + ME E ++P+ V + ++++A
Sbjct: 388 QALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIMEAEGIEPNIVMLNMLINAFGNA 447
Query: 234 RDLEFGIWVSSHIEKNGIKMDL 255
I V HI+++G+ D+
Sbjct: 448 GRYMEAISVYHHIKESGVSPDV 469
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKK----DVVSWNSMISGFVEGGFFEKAIELY 208
D I NS+I + G+L A +F + K+ ++V+WNS+I + G F KA L+
Sbjct: 258 DTHICNSIIDTFGKYGELDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKAFHLF 317
Query: 209 REMEVENVKPDEVTMVVVLSACAKK 233
+M+ + + PD V ++S ++
Sbjct: 318 TDMQEQGLYPDPKIFVTIISCLGEQ 342
>gi|302776814|ref|XP_002971551.1| hypothetical protein SELMODRAFT_61534 [Selaginella moellendorffii]
gi|300160683|gb|EFJ27300.1| hypothetical protein SELMODRAFT_61534 [Selaginella moellendorffii]
Length = 505
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 8/231 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + + + +HA +L + D + L A SL A ++F +P N+ WN
Sbjct: 103 LKDLARGRAVHAGLLVSGIQPDDFLRVALLNMYA--KLGSLGEATRIFHSMPTDNVVAWN 160
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE- 151
+I A+S SD+P + + +++ P+ TL + A + + G+AIH +
Sbjct: 161 VMIAAFSQSDQPSLALEFYWKMLAGGTR-PDFCTLISTLSAVSCLRRLSHGRAIHDSIQA 219
Query: 152 ----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
D+++ +L+ Y CG L A VF + +D+V+WN+MI+ + + G +KA EL
Sbjct: 220 HGYCSDVILDTALVDMYGKCGSLDDARMVFDKMPARDIVTWNAMIAAYSQHGQGDKAFEL 279
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
Y EME + KP+ VT+V +L+A DL G + S I + +++ L E
Sbjct: 280 YAEMEPQGFKPELVTLVNLLTASCCLGDLSRGKAIHSRIIDDKLELTLVAE 330
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 13/204 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
I A +D D + ++ C SL+ AR +FD++P ++ TWN +I AYS
Sbjct: 217 IQAHGYCSDVILDT-ALVDMYGKCG-----SLDDARMVFDKMPARDIVTWNAMIAAYSQH 270
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVI 156
+ ++F ++ ++ + P TL ++ A+ G+AIH DD LV
Sbjct: 271 GQGDKAFELYAEMEPQG-FKPELVTLVNLLTASCCLGDLSRGKAIHSRIIDDKLELTLVA 329
Query: 157 SNSLIHFYAVCGDLAMAYCVF-VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
N++++ YA CG LA A F MI +DV+SWN++I+G E G E +++L ++M +
Sbjct: 330 ENAIVNMYAKCGSLAQAKLAFDGMIHPRDVISWNAIIAGNAENGGTETSLQLAKDMVHDG 389
Query: 216 VKPDEVTMVVVLSACAKKRDLEFG 239
V PD T VL C+ L+ G
Sbjct: 390 VAPDATTFTCVLLCCSHGGQLDQG 413
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%)
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ N+L+ Y CG + A VF I +K+ S+N +IS G + +A++ + M+ E
Sbjct: 25 CLQNALVQMYGKCGSMKEALAVFSTIARKNTYSYNILISAAARNGLYREALDAFERMKRE 84
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ D+ T V++AC +DL G V + + +GI+ D
Sbjct: 85 GIPRDKFTYADVITACCSLKDLARGRAVHAGLLVSGIQPD 124
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR FD++PQ + +W +I Y+ S ++ +F+++ + N T + A
Sbjct: 266 ARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERL-NRSTFTSTLSTCA 324
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+G+ +HG E + N+L+ Y CG++ AY VF I +K+VVSWN+
Sbjct: 325 EIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNT 384
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI+G+ GF ++A+ L+ M+ + PD+VTMV VLSAC+
Sbjct: 385 MIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACS 425
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 39/214 (18%)
Query: 43 HAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+ ++L F+ +FT A+ + L+ AR++FD +P+ N +WN +I Y
Sbjct: 167 NGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGY 226
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISN 158
Q+ +F A P Q ++ N
Sbjct: 227 VQCKRMDQARELF----------------------EAMPCQ-------------NVSSWN 251
Query: 159 SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218
++I YA GD+A A F + ++D +SW ++I+G+ + G+ E+A+ L+ EM+ + +
Sbjct: 252 TMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERL 311
Query: 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252
+ T LS CA+ LE G V + K G++
Sbjct: 312 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLE 345
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 12/151 (7%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+ +L AR +FDQ+P+ ++ +WN ++ Y+ + ++ IF ++ P + ++ +
Sbjct: 43 YRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM-------PCKNSISW 95
Query: 130 VIKAAARPVQFRVGQAIHGMFED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
AA R+ A +FE +L+ N ++ Y L A +F + ++D
Sbjct: 96 NGMLAAYVQNGRIEDARR-LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDE 154
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENV 216
VSWN+MISG+ + G +A L+ E V +V
Sbjct: 155 VSWNTMISGYAQNGELLEAQRLFEESPVRDV 185
>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 20/236 (8%)
Query: 15 PNPTTLT---VNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFT---PCALS 68
PNP+ LT R PH L +QL HA+ L +P+ + L T C L
Sbjct: 113 PNPSHLTFPIALKSASRLPHPLRAGEQL---HARSLKLPSHTNPHVLTSLLTLYARCGL- 168
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
L A+++FD++P P+ +W LI AY + + ++ + N P+ FT
Sbjct: 169 ----LHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANG-MRPDSFTAV 223
Query: 129 FVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V+ A AR G+ + E + + ++ + + Y CG++A A VF + K
Sbjct: 224 RVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDK 283
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
D V+W +M+ G+ G +A++L+ M+ E V+PD + LSAC + L+ G
Sbjct: 284 DAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 339
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 11/183 (6%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F +A L+ C + AR++FD++ + W ++ Y+S+ P ++ +FL
Sbjct: 255 FVATAAVDLYVKCG-----EMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFL 309
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-QAIHGM----FEDDLVISNSLIHFYAVC 167
+ P+ + + + A R +G QAI + F D+ V+ +LI YA C
Sbjct: 310 AMQAEG-VRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKC 368
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G A A+ VF + KKD++ WN+MI G G + A L +ME VK ++ T + +L
Sbjct: 369 GSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLL 428
Query: 228 SAC 230
+C
Sbjct: 429 CSC 431
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 122 PNEFTLPFVIKAAAR-PVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYC 175
P+ T P +K+A+R P R G+ +H + + SL+ YA CG L A
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 174
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + VSW ++I+ +++ G +A+ + R ++PD T V VL+ACA+ D
Sbjct: 175 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 234
Query: 236 LEFGIWVSSHIEKNGI 251
L G V E+ GI
Sbjct: 235 LATGETVWRAAEQEGI 250
>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
Length = 874
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 105/196 (53%), Gaps = 9/196 (4%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IHAQ++ T++ P+ + L + S F S E A +F I Q ++ W+ ++ ++
Sbjct: 421 QIHAQVIKTNYQHIPFVGTALLA--SYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQ 478
Query: 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP-VQFRVGQAIHGM-----FEDDL 154
+ + + +F ++ PNEFT+ VI A A P G+ H + + D +
Sbjct: 479 AGDCEGATYLFNKMAIQG-IKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAI 537
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+S++L+ Y+ G++ A VF +D+VSWNSMISG+ + G+ KAIE +R+ME
Sbjct: 538 CVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEAS 597
Query: 215 NVKPDEVTMVVVLSAC 230
++ D VT + V+ C
Sbjct: 598 GIQMDGVTFLAVIMGC 613
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 6/178 (3%)
Query: 78 KMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137
++F+ +P+ N+ TW +L+ + + + +F ++ +PN FT V+ A A
Sbjct: 156 EVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEG-IWPNPFTFASVLSAVASQ 214
Query: 138 VQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMI 192
+GQ +H + + NSL++ YA CG + A VF + +D+VSWN+++
Sbjct: 215 GALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLM 274
Query: 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+G +A++L+ E K + T V+ CA + L + S + K+G
Sbjct: 275 AGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHG 332
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 12/207 (5%)
Query: 32 FLTNQKQL---KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP-N 87
N KQL +++H+ +L F + L A S L A +F N
Sbjct: 311 LCANLKQLALARQLHSCVLKHGFHLTGNVMTALAD--AYSKCGELADALNIFSMTTGSRN 368
Query: 88 LYTWNTLIRA-YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR--PVQFRVGQ 144
+ +W +I + D P+ ++ + PNEFT ++KA+ P Q Q
Sbjct: 369 VVSWTAIISGCIQNGDIPLA--VVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIH-AQ 425
Query: 145 AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
I ++ + +L+ Y+ G A +F MI +KDVV+W++M+S + G E A
Sbjct: 426 VIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGA 485
Query: 205 IELYREMEVENVKPDEVTMVVVLSACA 231
L+ +M ++ +KP+E T+ V+ ACA
Sbjct: 486 TYLFNKMAIQGIKPNEFTISSVIDACA 512
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 15/199 (7%)
Query: 40 KRIHAQML---STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+R+HAQ + F S ++ C L +E A+ +F+ + ++ +WNTL+
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGL-----VEDAKSVFNWMETRDMVSWNTLMA 275
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
++ +++ +F + + T VIK A Q + + +H F
Sbjct: 276 GLQLNECELEALQLFHESRATMGKM-TQSTYATVIKLCANLKQLALARQLHSCVLKHGFH 334
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMI-GKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ +L Y+ CG+LA A +F M G ++VVSW ++ISG ++ G A+ L+
Sbjct: 335 LTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSR 394
Query: 211 MEVENVKPDEVTMVVVLSA 229
M + V P+E T +L A
Sbjct: 395 MREDRVMPNEFTYSAMLKA 413
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 10/185 (5%)
Query: 76 ARKMFDQIPQPNLYTW-NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR D+IP+ + N ++ Y+ ++ F + + TL V+KA
Sbjct: 51 ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQF-SVARRGGVLVDSATLSCVLKAC 109
Query: 135 ARPVQFRV-GQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
R V RV G+ +H G ++ SL+ Y CG + VF + KK+VV+
Sbjct: 110 -RSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVT 168
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W S+++G + + L+ M E + P+ T VLSA A + L+ G V +
Sbjct: 169 WTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSV 228
Query: 248 KNGIK 252
K G +
Sbjct: 229 KFGCR 233
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 91/162 (56%), Gaps = 8/162 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+ +FD +PQ NL +W LI Y+ + P Q+ IF + + P+E TL V+ A A
Sbjct: 196 AQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQN-VVPDEITLLAVLSACA 254
Query: 136 RPVQFRVGQ------AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ +G+ IHG+ ++ + N+LI YA G++ A +F + K +V+W
Sbjct: 255 QLGALELGEWIRNYIDIHGL-HRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWT 313
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+MI+G G +A+E++ ME + VKP+E+T + VLSAC+
Sbjct: 314 TMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSACS 355
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 127/260 (48%), Gaps = 41/260 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP-NLYTWN 92
+N K L + HA ML D S LF + S SL YA +F + P N++ +N
Sbjct: 22 SNLKHLHQTHAFMLCRALDHDNLLLS-LFIQSSSSLGFSL-YAYSLFTSLTHPPNIFLYN 79
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---- 148
T+IRA S S +P S +F + ++ P+ ++ PF +KA R + G H
Sbjct: 80 TIIRALSLSPQPSLSIFLF-NRIQSARLRPDSYSFPFALKAVIRLSATKTGLQFHSQAIR 138
Query: 149 ---------------------------MFED------DLVISNSLIHFYAVCGDLAMAYC 175
+F+ ++ + N+++ YA D+ A
Sbjct: 139 FGLHSHLHVLVSLIRMYSSSHISDARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQH 198
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+F + +++++SW ++ISG+ +AI ++R M+++NV PDE+T++ VLSACA+
Sbjct: 199 LFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGA 258
Query: 236 LEFGIWVSSHIEKNGIKMDL 255
LE G W+ ++I+ +G+ ++
Sbjct: 259 LELGEWIRNYIDIHGLHRNV 278
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 7/227 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T QL +I AQ++ +D S +KL ++ + R++F+++ +P+L+ +N
Sbjct: 25 TTLSQLLQIQAQLILHGIHYDLSSITKL--THKFFDLGAVAHVRQLFNKVSKPDLFLFNV 82
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
LIR +S + P S ++ L + P+ FT F I AA+R RVG +H D
Sbjct: 83 LIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVD 142
Query: 154 LVISN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
V SN +++ Y +A VF ++ ++D V WN+MISGF +FE +I ++
Sbjct: 143 GVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVF 202
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+M + D T+ VL+A A+ ++ G+ + K G+ D+
Sbjct: 203 VDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 112/205 (54%), Gaps = 14/205 (6%)
Query: 35 NQKQLKRIHAQM-LSTDFFFDPYSASKLFTP-CALSTFSSLEYARKMFDQIPQPNLYTWN 92
N QL R+ + L P ++ L T C L+ +++AR++FD+ P+ +L +WN
Sbjct: 329 NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLN---EVQFARQLFDESPEKSLASWN 385
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+I Y+ + ++ +F +++ P PN T+ ++ A A+ +G+ +HG+
Sbjct: 386 AMISGYTQNGLTDRAISLFQEMM---PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIK 442
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
E ++ +S +L+ YA CG + A +F ++ K+VV+WN+MI+G+ G ++A++
Sbjct: 443 SERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALK 502
Query: 207 LYREMEVENVKPDEVTMVVVLSACA 231
L+ EM + P VT + +L AC+
Sbjct: 503 LFYEMLQSGIPPTGVTFLSILYACS 527
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 10/176 (5%)
Query: 58 ASKLFTPCALS----TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
AS LF A+ F+ E ARK+FD +P+ + WNT+I +S + S +F+
Sbjct: 145 ASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVD 204
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCG 168
++ F + TL V+ A A ++R+G I + D+ + LI Y+ CG
Sbjct: 205 MLDVGLSF-DSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCG 263
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224
+F I + D++S+N+MISG+ E A+ L+RE+ + + T+V
Sbjct: 264 KSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLV 319
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C S R +FDQI QP+L ++N +I Y+ + E + +F +L+ +
Sbjct: 258 LYSKCGKSC-----KGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQR 312
Query: 121 FPNE-------FTLPFVIKAAARPVQ---FRVGQAIHGMFEDDLVISNSLIHFYAVCGDL 170
+ LPF +R +Q ++G + +S +L Y ++
Sbjct: 313 VNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPS------VSTALTTVYCRLNEV 366
Query: 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
A +F +K + SWN+MISG+ + G ++AI L++EM + + P+ VT+ +LSAC
Sbjct: 367 QFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSAC 425
Query: 231 AKKRDLEFGIWVSSHIE 247
A+ L G WV I+
Sbjct: 426 AQLGALSIGKWVHGLIK 442
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,036,901,098
Number of Sequences: 23463169
Number of extensions: 157223197
Number of successful extensions: 500414
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7567
Number of HSP's successfully gapped in prelim test: 1618
Number of HSP's that attempted gapping in prelim test: 427244
Number of HSP's gapped (non-prelim): 44894
length of query: 258
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 119
effective length of database: 9,097,814,876
effective search space: 1082639970244
effective search space used: 1082639970244
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 75 (33.5 bits)